BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042098
         (566 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/568 (71%), Positives = 482/568 (84%), Gaps = 11/568 (1%)

Query: 3   LRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI 62
           L ++ +++ LA ++ +    L +KLLSLLK+C STK++QQIHTQM+IN I KPNFLL R 
Sbjct: 10  LISRHFTKALAKSQRHAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRF 69

Query: 63  IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
           IDLKDFN ASLLF QI  PNEYAFN+MIRGLTT WQK++ +++ YYQMK  G++P+NFTY
Sbjct: 70  IDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTY 129

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           PFVFI+CANLL LNHG   HS V K GL  D HV HSLITMY+RCG+L  AR+VFDEI E
Sbjct: 130 PFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISE 189

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +DLVSWNSMISGYS+MGYA +AV LFG MR+  F PDE+TLVS+LG+CGDLGDL LG W+
Sbjct: 190 KDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWI 249

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
           EGFVV+N+MDLN ++GSALI MYGKCG L  ARRVFD MV KDVVTWNAMIT YAQNG+S
Sbjct: 250 EGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVS 309

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
           +EAI+LF+ M+ +GVNPDKITL+GVLSACASIGALD GKW+D YAS+RGL++DI+     
Sbjct: 310 DEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTAL 369

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CGS+DDAL+VFEDMP  NEVSWNAMISALAF+GR  E+L LF+RMSKEGGA RP
Sbjct: 370 IDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRP 429

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           ND++FIGVLSACVHAGLVDEGR+LFDLMSSSFGL+PK EH+SCMVDL ARAGH+ EAWDF
Sbjct: 430 NDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDF 489

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +E+MPEK DE+VLGALLGACQK++N DVS+RVM +LLE+E  NSGNY+ISSKIFAN+K W
Sbjct: 490 IEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRW 549

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
           DDSA+MR LMR++GV+KTPGCSWI I++
Sbjct: 550 DDSARMRVLMRQRGVTKTPGCSWIEIEN 577


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/564 (67%), Positives = 462/564 (81%), Gaps = 17/564 (3%)

Query: 11  HLAFTELN------DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
           HL  + LN          L EKLLSL+K+C S   ++QIH QMLIN I KPNFLL +IID
Sbjct: 14  HLPLSNLNFQTQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIID 73

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           LKD  YASL+F+Q+++PN YAFNVM+RGL T W+KY   ++LYY++K LGLK +NFTYPF
Sbjct: 74  LKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPF 133

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +FI+C N+  L HG   H  VFK GLD D++V+HSLITMYARCG++  ARKVFDE+ +RD
Sbjct: 134 LFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRD 193

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           LVSWNSMISGYSKMG+ KEA+ LF  MREE F PDE+TLVSVLG+CGDLGDL LG+WVEG
Sbjct: 194 LVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEG 253

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           FV++ KM++N YMGSALIDMYGKCG L+ ARRVFD+M NKDVVTWNA+IT YAQNG SNE
Sbjct: 254 FVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNE 313

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           AI+LFN M+ AG +PD++T+I VLSAC++IGALDLGKWV+ +AS++GL+HD++       
Sbjct: 314 AIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALID 373

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CGS+DDA++VFE MP  NEVSWNAMISALAF+G+A EAL LF RMSK+ G  +PND
Sbjct: 374 MYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPND 433

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +TFIGVLSACVHAGLVDEGR+LF+ M+ SFGL+PK EHYSCMVDL ARAG L EAWD ++
Sbjct: 434 ITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIK 493

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
           +MP K DEIVLG+LLGACQ+++N DV +RV+QL LE+E SNSGNYVISSKI+AN++ WDD
Sbjct: 494 KMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDD 553

Query: 534 SAKMRALMREKGVSKTPGCSWIGI 557
           SAKMR LMR+ GVSKTPGCSWI I
Sbjct: 554 SAKMRVLMRQCGVSKTPGCSWIDI 577


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/578 (65%), Positives = 454/578 (78%), Gaps = 22/578 (3%)

Query: 2   LLRAKAYSRHLAFTELN--------DPS--LLREKLLSLLKKCPSTKTVQQIHTQMLINF 51
           +LR KA S HL    LN        +P+   L +K  SLL++C S K ++QIH Q+L N 
Sbjct: 1   MLRTKA-SPHLISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNS 59

Query: 52  IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           I KPN  L +I DLKDF YAS+ F  I  P EY+FNVMIRGL+TAW K S +L+ Y +MK
Sbjct: 60  IHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMK 119

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
            LGLKP+N TYPF+FI+C+NLLA+ +G   H SV + GLDED HVSHSLITMYARCGK+ 
Sbjct: 120 FLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMG 179

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            ARKVFDEI ++DLVSWNSMISGYSKM +A EAV LF  M E  F P+E++LVSVLG+CG
Sbjct: 180 DARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACG 239

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
           +LGDL LG WVE FVV+NKM LN++MGSALI MYGKCG LV ARR+FD+M  KD VTWNA
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MIT YAQNG+S EAI LF  M+ +   PD+ITLIG+LSACASIGALDLGK V+ YAS+RG
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
            + D++           CGS+D+A +VF  MP  NEVSWNAMISALAF+G+A EAL LF+
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFK 419

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M  EGG   PND+TF+GVLSACVHAGLVDEGRRLF +MSSSFGL+PK EHYSCMVDL++
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFS 479

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAGHL EAWDFV  MPEK DE++LGALLGACQK+KN D+S+RVM+LLLE+E SNSGNYVI
Sbjct: 480 RAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVI 539

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           SSK++ANL+ WDDSA+MR LM++KGVSKTPGCSWI I+
Sbjct: 540 SSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/578 (65%), Positives = 454/578 (78%), Gaps = 22/578 (3%)

Query: 2   LLRAKAYSRHLAFTELN--------DPS--LLREKLLSLLKKCPSTKTVQQIHTQMLINF 51
           +LR KA S HL    LN        +P+   L +K  SLL++C S K ++QIH Q+L N 
Sbjct: 1   MLRTKA-SPHLISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNS 59

Query: 52  IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           I KPN  L +I DLKDF YAS+ F  I  P EY+FNVMIRGL+TAW K S +L+ Y +MK
Sbjct: 60  IHKPNSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMK 119

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
            LGLKP+N TYPF+FI+C+NLLA+ +G   H SV + GLDED HVSHSLITMYARCGK+ 
Sbjct: 120 FLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMG 179

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            ARKVFDEI ++DLVSWNSMISGYSKM +A EAV LF  M E  F P+E++LVSVLG+CG
Sbjct: 180 DARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACG 239

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
           +LGDL LG WVE FVV+NKM LN++MGSALI MYGKCG LV ARR+FD+M  KD VTWNA
Sbjct: 240 ELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MIT YAQNG+S EAI LF  M+ +   PD+ITLIG+LSACASIGALDLGK V+ YAS+RG
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
            + D++           CGS+D+A +VF  MP  NEVSWNAMISALAF+G+A EAL LF+
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFK 419

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M  EGG   PND+TF+GVLSACVHAGLVDEGRRLF +MSSSFGL+PK EHYSCMVDL++
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFS 479

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAGHL EAWDFV  MPEK DE++LGALLGACQK+KN D+S+RVM+LLLE+E SNSGNYVI
Sbjct: 480 RAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVI 539

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           SSK++ANL+ WDDSA+MR LM++KGVSKTPGCSWI I+
Sbjct: 540 SSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/567 (62%), Positives = 445/567 (78%), Gaps = 21/567 (3%)

Query: 9   SRHLAFTELN-----DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII 63
           S+H  F  +N      P  L   LLSLLK+CPSTKT+QQIHTQ  I+ I KPN LL + I
Sbjct: 4   SKHKIFKTINTNTNHSPIFL---LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSI 60

Query: 64  DLKDFNYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
            LKDF Y++L+F  I+  PN+YAFN+M+R  TT W  Y  +L LY+QMK L + P+NFT+
Sbjct: 61  SLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTF 120

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           PFVF++CANL  +      H  VFK+GLD D H  +S++TMY RCG+   ARKVFDEI E
Sbjct: 121 PFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITE 180

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKW 241
           +DLVSWNS++SGY+K+G+A+EAVE+FGR+REE  F PDE++LVSVLG+CG+LGDL LG+W
Sbjct: 181 KDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRW 240

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           VEGFVV+  M +N Y+GSALI MY KCG LV +RR+FD M ++D +TWNA I+AYAQNG+
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGM 300

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           ++EAI LF+ MK  GV+P+K+TL  VLSACASIGALDLGK +D+YA+ RGL+HDIF    
Sbjct: 301 ADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATA 360

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CGS++ A +VF DMP  N+ SWNAMISALA +G+A EAL LFERMS EGG+AR
Sbjct: 361 LIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSAR 420

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PND+TF+ +LSACVHAGLVDEG RLFD+MS+ FGL+PK EHYSCMVDL +RAGHL EAWD
Sbjct: 421 PNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWD 480

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +E+MPEK D + LGAL  ACQ++KN D+ +RV+Q+LLE++ SNSGNY+ISSKI+ NL M
Sbjct: 481 VIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNM 540

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
           WDD+A+MRALMRE GV+KTPGCSWI +
Sbjct: 541 WDDAARMRALMRENGVTKTPGCSWIEV 567


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/567 (62%), Positives = 445/567 (78%), Gaps = 21/567 (3%)

Query: 9   SRHLAFTELN-----DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII 63
           S+H  F  +N      P  L   LLSLLK+CPSTKT+QQIHTQ  I+ I KPN LL + I
Sbjct: 4   SKHKIFKTINTNTNHSPIFL---LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSI 60

Query: 64  DLKDFNYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
            LKDF Y++L+F  I+  PN+YAFN+M+R  TT W  Y  +L LY+QMK L + P+NFT+
Sbjct: 61  SLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTF 120

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           PFVF++CANL  +      H  VFK+GLD D H  +S++TMY RCG+   ARKVFDEI E
Sbjct: 121 PFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITE 180

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKW 241
           +DLVSWNS++SGY+K+G+A+EAVE+FGR+REE  F PDE++LVSVLG+CG+LGDL LG+W
Sbjct: 181 KDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRW 240

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           VEGFVV+  M +N Y+GSALI MY KCG LV +RR+FD M ++D +TWNA I+AYAQNG+
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGM 300

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           ++EAI LF+ MK  GV+P+K+TL  VLSACASIGALDLGK +D+YA+ RGL+HDIF    
Sbjct: 301 ADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATA 360

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CGS++ A +VF DMP  N+ SWNAMISALA +G+A EAL LFERMS EGG+AR
Sbjct: 361 LIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSAR 420

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PND+TF+ +LSACVHAGLVDEG RLFD+MS+ FGL+PK EHYSCMVDL +RAGHL EAWD
Sbjct: 421 PNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWD 480

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +E+MPEK D + LGAL  ACQ++KN D+ +RV+Q+LLE++ SNSGNY+ISSKI+ NL M
Sbjct: 481 VIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNM 540

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
           WDD+A+MRALMRE GV+KTPGCSWI +
Sbjct: 541 WDDAARMRALMRENGVTKTPGCSWIEV 567


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/570 (61%), Positives = 441/570 (77%), Gaps = 20/570 (3%)

Query: 10  RHLAFTELNDPSLLR-----EKLLSLLKKCPSTKTVQQIHTQMLINF-IQKPN-FLLIRI 62
           RHLAF  +      +     E L+ L K+C STKT+QQ+HTQM++N  I  PN  LL + 
Sbjct: 5   RHLAFENVAVGGKCKYYHTAECLVFLAKQCSSTKTLQQVHTQMVVNSSIHTPNNHLLSKA 64

Query: 63  IDLKDFNYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           I LK+F Y+SLLF  I+  PN+YAFN+MIR LTT W  Y  +L L+++M  L L PDNFT
Sbjct: 65  IHLKNFPYSSLLFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFT 124

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +PF F+SCANL +L+H  + HS +FK+ L  D H +HSLIT YARCG + SARKVFDEI 
Sbjct: 125 FPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIP 184

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            RD VSWNSMI+GY+K G A+EAVE+F  M R + F PDE++LVS+LG+CG+LGDL LG+
Sbjct: 185 HRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGR 244

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
           WVEGFVV+  M LN Y+GSALI MY KCG L  ARR+FD M  +DV+TWNA+I+ YAQNG
Sbjct: 245 WVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNG 304

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-- 358
           +++EAI+LF+ MK   V  +KITL  VLSACA+IGALDLGK +D+YASQRG +HDIF   
Sbjct: 305 MADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVAT 364

Query: 359 ---------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                    GS+D+A +VF+DMP  NE SWNAMISALA +G+A EAL LF+ MS EGG A
Sbjct: 365 ALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGA 424

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           RPND+TF+G+LSACVHAGLVDEG RLFD+MS+ FGL+PK EHYSCMVDL ARAGHL EAW
Sbjct: 425 RPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAW 484

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
           D + +MPEK D++ LGALLGAC+ +KN D+ +RVM+++LE++ SNSGNY+ISSKI+ANL 
Sbjct: 485 DLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLN 544

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           MW+DSA+MR LMR+KG++KTPGCSWI +++
Sbjct: 545 MWEDSARMRLLMRQKGITKTPGCSWIEVEN 574


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/548 (62%), Positives = 432/548 (78%), Gaps = 15/548 (2%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLI-NFIQKPN-FLLIRIIDLKDFNYASLLFHQIS-RPNE 83
           L+ L K+C S+KT+QQ+H QM++ + I  PN  LL + I LK+F YASLLF  I+  PN+
Sbjct: 21  LVFLAKQCSSSKTLQQVHAQMVVKSSIHSPNNHLLSKAIHLKNFTYASLLFSHIAPHPND 80

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           YAFN+MIR LTT W  Y  +L L+++M  L L P+NFT+PF F+SCANL  L+   + HS
Sbjct: 81  YAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHS 140

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            VFK+ L  D H +HSLITMY+RCG++  ARKVFDEI  RDLVSWNSMI+GY+K G A+E
Sbjct: 141 LVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCARE 200

Query: 204 AVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           AVE+FG M R + F PDE++LVSVLG+CG+LGDL LG+WVEGFVV+  M LN Y+GSALI
Sbjct: 201 AVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALI 260

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG L  ARR+FD M  +DV+TWNA+I+ YAQNG+++EAI LF+ MK   V  +KI
Sbjct: 261 SMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKI 320

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL  VLSACA+IGALDLGK +D+YASQRG +HDIF           CGS+  A +VF++M
Sbjct: 321 TLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEM 380

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  NE SWNAMISALA +G+A EAL LF+ MS EGG ARPND+TF+G+LSACVHAGLV+E
Sbjct: 381 PQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNE 440

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G RLFD+MS+ FGL+PK EHYSCMVDL ARAGHL EAWD +E+MPEK D++ LGALLGAC
Sbjct: 441 GYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGAC 500

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           + +KN D+ +RV++++LE++ SNSGNY+ISSKI+ANL MW+DSA+MR LMR+KG++KTPG
Sbjct: 501 RSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPG 560

Query: 552 CSWIGIDD 559
           CSWI +++
Sbjct: 561 CSWIEVEN 568


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/548 (56%), Positives = 402/548 (73%), Gaps = 17/548 (3%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           L    L LLKKC S   ++QI  QML++ ++KPNFL+ + ++L DFNY+S LF     PN
Sbjct: 32  LERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPN 91

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            Y+FN MIRGLT  W  +  +L LY +MK  GLKPD FTY FVFI+CA L  +  G SVH
Sbjct: 92  HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 151

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           SS+FK+GL+ D H++HSLI MYA+CG++  ARK+FDEI ERD VSWNSMISGYS+ GYAK
Sbjct: 152 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 211

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A++LF +M EE F PDE TLVS+LG+C  LGDL  G+ +E   +  K+ L+ ++GS LI
Sbjct: 212 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLI 271

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MYGKCG L  ARRVF+ M+ KD V W AMIT Y+QNG S+EA  LF  M+  GV+PD  
Sbjct: 272 SMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 331

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL  VLSAC S+GAL+LGK ++ +AS+  L+H+I+           CG +++AL+VFE M
Sbjct: 332 TLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM 391

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           PV NE +WNAMI+A A  G A EALLLF+RMS       P+D+TFIGVLSACVHAGLV +
Sbjct: 392 PVKNEATWNAMITAYAHQGHAKEALLLFDRMS-----VPPSDITFIGVLSACVHAGLVHQ 446

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G R F  MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 447 GCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGAC 506

Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
            K+K+  + ++ M++L+E+ E+ N+GNYVISS + A++KMWD+SAKMRALMR++GV KTP
Sbjct: 507 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTP 566

Query: 551 GCSWIGID 558
           GCSWI I+
Sbjct: 567 GCSWIEIE 574


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/548 (56%), Positives = 402/548 (73%), Gaps = 17/548 (3%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           L    L LLKKC S   ++QI  QML++ ++KPNFL+ + ++L DFNY+S LF     PN
Sbjct: 36  LERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPN 95

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            Y+FN MIRGLT  W  +  +L LY +MK  GLKPD FTY FVFI+CA L  +  G SVH
Sbjct: 96  HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           SS+FK+GL+ D H++HSLI MYA+CG++  ARK+FDEI ERD VSWNSMISGYS+ GYAK
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A++LF +M EE F PDE TLVS+LG+C  LGDL  G+ +E   +  K+ L+ ++GS LI
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLI 275

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MYGKCG L  ARRVF+ M+ KD V W AMIT Y+QNG S+EA  LF  M+  GV+PD  
Sbjct: 276 SMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 335

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL  VLSAC S+GAL+LGK ++ +AS+  L+H+I+           CG +++AL+VFE M
Sbjct: 336 TLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM 395

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           PV NE +WNAMI+A A  G A EALLLF+RMS       P+D+TFIGVLSACVHAGLV +
Sbjct: 396 PVKNEATWNAMITAYAHQGHAKEALLLFDRMS-----VPPSDITFIGVLSACVHAGLVHQ 450

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G R F  MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 451 GCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGAC 510

Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
            K+K+  + ++ M++L+E+ E+ N+GNYVISS + A++KMWD+SAKMRALMR++GV KTP
Sbjct: 511 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTP 570

Query: 551 GCSWIGID 558
           GCSWI I+
Sbjct: 571 GCSWIEIE 578


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/548 (56%), Positives = 400/548 (72%), Gaps = 17/548 (3%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           L    L LLKKC S   +++I  QML++ ++KPNFL+ + ++L DFNYAS L      PN
Sbjct: 33  LERGFLFLLKKCISVNQLREIQAQMLLHSVEKPNFLIPKAVELGDFNYASFLLSVTEEPN 92

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            Y+FN MIRGLT  W  +  +L LY +MK  GLKPDNFTY FVFI+C     +  G SVH
Sbjct: 93  HYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVH 152

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           SS+FK+GL+ DDH+SHSLI MYA+CG +  ARKVFDEI +R  VSWNSMISGYS+ G AK
Sbjct: 153 SSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAK 212

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A++LF +M EE F PDE TLVS+LG+C  LGDL  G+ +E   +  K+ L+ ++GS LI
Sbjct: 213 DAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLI 272

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MYGKCG L  ARRVF+ M+ KD V WNAMIT Y+QNG S+EA  LF  M+  GV+PD  
Sbjct: 273 TMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 332

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL  VLSAC S+GAL+LGK ++ +AS+  L+H+I+           CG I++AL+VFE M
Sbjct: 333 TLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAM 392

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           PV NE +WNAMI+A A  G A EALLLF++M        P+DVTFIGVLSACVHAGLVD+
Sbjct: 393 PVKNEATWNAMITAYAHQGHAKEALLLFDQM-----PVPPSDVTFIGVLSACVHAGLVDQ 447

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G R F  MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 448 GCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLAAILGAC 507

Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
            K+K+  + ++ M++L+E+ E+ N+GNYVISSK+ A++KMWD+SAKMRALMR++GV KTP
Sbjct: 508 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSKVLADMKMWDESAKMRALMRDRGVVKTP 567

Query: 551 GCSWIGID 558
           GCSWI I+
Sbjct: 568 GCSWIEIN 575


>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/431 (66%), Positives = 339/431 (78%), Gaps = 17/431 (3%)

Query: 9   SRHLAFTELN--DPSLLREKLLSLLK---KCPSTKTVQQIHTQMLINFIQKPNFLLIRII 63
           S  LAF E N  +P  L+   + LLK   +C S K +QQIH QM+IN + KPNFLL RII
Sbjct: 12  SGQLAFAEPNPVEPHQLQTLTVKLLKLLKQCRSKKPMQQIHAQMIINSLSKPNFLLPRII 71

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
           DLKDF YASLLF Q+  PN+YAFNVMIRGLTT W+ YS +++LYYQMK LGLKP+NFT+P
Sbjct: 72  DLKDFAYASLLFTQMPNPNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFP 131

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           F+FISCANL+AL+ G   HS V K+G + D H++HSLITMYA+C KLDSARKVFDEI ER
Sbjct: 132 FLFISCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILER 191

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D+VSWNSMISGY+KMG+A+EAV LF  MRE+ F P E+TLVS+LG+CGDLGDL LGKWVE
Sbjct: 192 DIVSWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVE 251

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
             +   KM+LN Y  SALIDMYGKCG L+ ARRVFD M  KD+VTWNAMIT YAQNG S+
Sbjct: 252 ALIGDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASD 311

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
           EA+ LFN M+ AG+ P++IT++ VLSACASIGALDLGKWV+ YASQRGL+HD++      
Sbjct: 312 EAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALV 371

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGS+D+AL+VFE+MP  NEVSWNAMISALAF+GRA EAL LF RM   G   RPN
Sbjct: 372 DMYAKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRM-LNGSTVRPN 430

Query: 413 DVTFIGVLSAC 423
           D+TFIGV +AC
Sbjct: 431 DITFIGVFAAC 441



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 179/331 (54%), Gaps = 18/331 (5%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKM--GYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           A  +F ++   +  ++N MI G +     Y+  A++L+ +M+     P+  T   +  SC
Sbjct: 79  ASLLFTQMPNPNDYAFNVMIRGLTTTWRNYSL-AIQLYYQMKSLGLKPNNFTFPFLFISC 137

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
            +L  L  G+     V+K   + + ++  +LI MY KC  L  AR+VFD ++ +D+V+WN
Sbjct: 138 ANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWN 197

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           +MI+ Y + G + EA+ LF  M+  G  P ++TL+ +L AC  +G L LGKWV+     +
Sbjct: 198 SMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDK 257

Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
            +  + +           CG +  A +VF++M   + V+WNAMI+  A NG + EA+ LF
Sbjct: 258 KMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLF 317

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
             M + G    PN++T + VLSAC   G +D G+ + ++ +S  GL       S +VD+Y
Sbjct: 318 NVMREAG--ITPNEITMVVVLSACASIGALDLGKWV-EMYASQRGLQHDVYVASALVDMY 374

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           A+ G L  A    E MP K +E+   A++ A
Sbjct: 375 AKCGSLDNALRVFENMPHK-NEVSWNAMISA 404


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/489 (51%), Positives = 341/489 (69%), Gaps = 15/489 (3%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P  +++NV +R   +   + +  L+L+ +M R  L+PD +T PF+ ++ A         S
Sbjct: 80  PTAFSYNVTLRFFASTRPRTA--LRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARS 137

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H+ + ++GL   DH  HSL+TMY+  G   +AR+VFD I  RD+VSWN+M+  Y + G 
Sbjct: 138 AHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGM 197

Query: 201 AKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           A +   +F  M +E    P+E+T+  VL +C D GDLVLG+W+E +V   ++++   +GS
Sbjct: 198 AADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGS 257

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+ MY KCG +  ARRVFD + +KDVV WNAMIT YAQNG+S EAI LF+ M+  G +P
Sbjct: 258 ALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASP 317

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           DKITL+GVLSACA++GAL+LG  +D YAS RGL  +++           CG +D A++VF
Sbjct: 318 DKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVF 377

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             +P  NE +WNA+I  LAFNGR HEA+  FE M  E G  RP+D+TFIGVLSACVHAGL
Sbjct: 378 GKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGL-RPDDITFIGVLSACVHAGL 436

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + +GRR F+ ++S F +IPK EHYSCMVDL ARAGHL EAWDFVE++P K D ++LGALL
Sbjct: 437 LKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALL 496

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+K KN +VS+RV+  ++++E SNS NYV+SSKI+A+    DDSAKMR LMRE+GVSK
Sbjct: 497 AACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSK 556

Query: 549 TPGCSWIGI 557
            PGCSW+ +
Sbjct: 557 IPGCSWVEV 565


>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/580 (46%), Positives = 364/580 (62%), Gaps = 29/580 (5%)

Query: 4   RAKAYSRHLAFTELNDPSL-----LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKP--- 55
           R  A  R  A   +  P++         +  L  +C S  T+QQ+H  +L +    P   
Sbjct: 4   RFPAPGRSRALPNVTSPAMPGVPPFSSAVSKLHSRCHSLSTIQQLHAHLLHHDRPIPYNH 63

Query: 56  ------NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQ 109
                 +            +Y  LL      P  ++FNV +R    +  + +  L+L  +
Sbjct: 64  FLSKLLSISSSSSPSTAAADYVHLLLTAHPTPTAFSFNVALRFFAASRPRTT--LQLSLR 121

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R  L+PD +T PF+ ++ A   A     S H+ + K+GL   DH  HSL+TMY+  G+
Sbjct: 122 MLRAALRPDAYTLPFLLLAAARCPAPAFAASAHALLQKLGLHNHDHTVHSLVTMYSNLGR 181

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP-DEITLVSVLG 228
             +AR+VFD I  RD+VSWNSMI  Y   G   +A  +F  M  E  +P + +T+  VL 
Sbjct: 182 PRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLA 241

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           +C D GDL LG+W+E +V    M++   +GSAL+ MY KCG +  ARRVFDA+ +KD V 
Sbjct: 242 ACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVA 301

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+IT YAQNG+S EAI LF+ M+ AG  PDKITL+GVLSACA++GAL+LG  +D+YA 
Sbjct: 302 WNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYAL 361

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           QRG   +++           CG +  A++VFE +P  NE SWNA+I  LAFNGR  EA+ 
Sbjct: 362 QRGFYSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIR 421

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            FE M K+ G  RP+D+TFIGVLSACVHAGL+ +GRR FD ++S F +IPK EHYSCMVD
Sbjct: 422 QFELMRKQEGL-RPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVD 480

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L ARAGHL EAWDF+E++P K D ++LGALL AC+K KN +VS RV+  ++ +E SNS N
Sbjct: 481 LLARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLEPSNSWN 540

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           YV+SSKI+A+    DDSA+MR LMRE+GVSK PGCSWI +
Sbjct: 541 YVVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCSWIEV 580


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/491 (50%), Positives = 346/491 (70%), Gaps = 15/491 (3%)

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           S P  +++NV IR   ++  +   SL+L+  M R  ++PD++T PF+ ++ A   A +  
Sbjct: 114 SAPTAFSYNVAIRFFASS--RPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLA 171

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            + H+ + KIGL+  DH  HSLITMY+      +ARKVFD I  RD+VSWN+M+  Y ++
Sbjct: 172 RAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRV 231

Query: 199 GYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G   E   +F  M +E    P+ +T+  VL +C D GDLVLG+WVE +    +M+++  +
Sbjct: 232 GMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLV 291

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           GSAL+ MY KCG +  ARRVFD +++KD+V WNAMIT YAQNG+SNEAI LF+ M+ AG+
Sbjct: 292 GSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGM 351

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PDKITL GVLSAC+++GAL+LG  +D YAS+RGL  +++           CG +D A++
Sbjct: 352 RPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIE 411

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  MP  N  SWNA+I  LAFNGR  EA+  F+ M  E G  +P+D+TFIGVLSACVHA
Sbjct: 412 VFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGL-KPDDITFIGVLSACVHA 470

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV +G+R F+ ++  F +IPK EHYSCMVDL AR+GHL EAWDF+E++P+KVD ++LGA
Sbjct: 471 GLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGA 530

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+K KN ++ +RV+  ++++E +NS NYV+SSKI+A+    DDSAKMR LMRE+GV
Sbjct: 531 LLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGV 590

Query: 547 SKTPGCSWIGI 557
           +KTPGCSW+ +
Sbjct: 591 NKTPGCSWVEV 601


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/491 (50%), Positives = 346/491 (70%), Gaps = 15/491 (3%)

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           S P  +++NV IR   ++  +   SL+L+  M R  ++PD++T PF+ ++ A   A +  
Sbjct: 114 SAPTAFSYNVAIRFFASS--RPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLA 171

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            + H+ + KIGL+  DH  HSLITMY+      +ARKVFD I  RD+VSWN+M+  Y ++
Sbjct: 172 RAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRV 231

Query: 199 GYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G   E   +F  M +E    P+ +T+  VL +C D GDLVLG+WVE +    +M+++  +
Sbjct: 232 GMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLV 291

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           GSAL+ MY KCG +  ARRVFD +++KD+V WNAMIT YAQNG+SNEAI LF+ M+ AG+
Sbjct: 292 GSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGM 351

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PDKITL GVLSAC+++GAL+LG  +D YAS+RGL  +++           CG +D A++
Sbjct: 352 RPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIE 411

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  MP  N  SWNA+I  LAFNGR  EA+  F+ M  E G  +P+D+TFIGVLSACVHA
Sbjct: 412 VFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGL-KPDDITFIGVLSACVHA 470

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV +G+R F+ ++  F +IPK EHYSCMVDL AR+GHL EAWDF+E++P+KVD ++LGA
Sbjct: 471 GLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGA 530

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+K KN ++ +RV+  ++++E +NS NYV+SSKI+A+    DDSAKMR LMRE+GV
Sbjct: 531 LLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGV 590

Query: 547 SKTPGCSWIGI 557
           +KTPGCSW+ +
Sbjct: 591 NKTPGCSWVEV 601


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/491 (50%), Positives = 346/491 (70%), Gaps = 15/491 (3%)

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           S P  +++NV IR   ++  +   SL+L+  M R  ++PD++T PF+ ++ A   A +  
Sbjct: 114 SAPTAFSYNVAIRFFASS--RPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLA 171

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            + H+ + KIGL+  DH  HSLITMY+      +ARKVFD I  RD+VSWN+M+  Y ++
Sbjct: 172 RAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRV 231

Query: 199 GYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G   E   +F  M +E    P+ +T+  VL +C D GDLVLG+WVE +    +M+++  +
Sbjct: 232 GMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLV 291

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           GSAL+ MY KCG +  ARRVFD +++KD+V WNAMIT YAQNG+SNEAI LF+ M+ AG+
Sbjct: 292 GSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGM 351

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PDKITL GVLSAC+++GAL+LG  +D YAS+RGL  +++           CG +D A++
Sbjct: 352 RPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIE 411

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  MP  N  SWNA+I  LAFNGR  EA+  F+ M  E G  +P+D+TFIGVLSACVHA
Sbjct: 412 VFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGL-KPDDITFIGVLSACVHA 470

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV +G+R F+ ++  F +IPK EHYSCMVDL AR+GHL EAWDF+E++P+KVD ++LGA
Sbjct: 471 GLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGA 530

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+K KN ++ +RV+  ++++E +NS NYV+SSKI+A+    DDSAKMR LMRE+GV
Sbjct: 531 LLAACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGV 590

Query: 547 SKTPGCSWIGI 557
           +KTPGCSW+ +
Sbjct: 591 NKTPGCSWVEV 601


>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
          Length = 700

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/548 (47%), Positives = 356/548 (64%), Gaps = 25/548 (4%)

Query: 33  KCPSTKTVQQIHTQMLI--------NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEY 84
           +C S  +V+Q+H  +L         N        L         NYA LL      P  +
Sbjct: 23  RCRSLASVKQLHAHILARSNSPFPYNHFLSKLLSLSCSASASAANYALLLLSSHPAPTAF 82

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKR--LGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            +NV IR   ++  +   SL+L+  M R  + ++PD +T PF+ ++ A   A     S H
Sbjct: 83  TYNVTIRLFASS--RPDTSLRLFLSMLRAEVRVRPDAYTLPFLLLAAARCPAPALARSAH 140

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           + + KIGL + DH  HSLITMY+      +AR+VFD I  RD+VSWNSM+  Y + G   
Sbjct: 141 ALLEKIGLGDHDHTVHSLITMYSCLDDHLAARRVFDGISHRDVVSWNSMVKAYERAGMVA 200

Query: 203 EAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           E   +   M  E    P+ +TL  VL +C D G+LVLG+WVE +V    M+++  +GSAL
Sbjct: 201 EVEGMLRSMVTEGAVAPNGVTLAVVLTACRDAGNLVLGRWVEEWVRSAGMEVDSLIGSAL 260

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY KCG +  ARRVFD + +KDVV WNAMIT YAQNG+SNEAI LF+ M+ AG+ PDK
Sbjct: 261 VGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLCPDK 320

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           ITL+GVLS+CA++GAL LG  +D YA +RGL ++++           CG ++ A  VF  
Sbjct: 321 ITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGK 380

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  NE SWNA+I  LAFNGR ++A+  FE M  E G  +P+D+TFIGVLSACVHAGL++
Sbjct: 381 MPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGL-QPDDITFIGVLSACVHAGLLE 439

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            GR+LF+ ++  F +IP+ EHYSC+VDL ARAGHL EAWDF+E MP KVD ++LGALL A
Sbjct: 440 YGRQLFNSLTPVFKIIPRIEHYSCIVDLLARAGHLEEAWDFIEEMPGKVDAVMLGALLAA 499

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+K KNT+V +RV+  ++++E SNS NYV+SSKI+A     D+SA+M  LMRE+GV+KTP
Sbjct: 500 CRKCKNTEVGERVINRIMKLEPSNSWNYVVSSKIYATSDKMDESARMIGLMRERGVNKTP 559

Query: 551 GCSWIGID 558
           GCSW+ ++
Sbjct: 560 GCSWVEVN 567


>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
 gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
          Length = 576

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/547 (45%), Positives = 341/547 (62%), Gaps = 52/547 (9%)

Query: 30  LLKKCPSTKTVQQIHTQMLI--------NFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           LL +C S   V+Q+H  +L         N        L         +Y  LL      P
Sbjct: 20  LLSRCRSLAAVKQLHANLLARSNRPFPYNHFLSKLLSLSSSSSAAAADYVLLLLSSHPAP 79

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             +++NV +R   ++  +   SL+L+  M R  L+PD +T PF+ ++ A   +     S 
Sbjct: 80  TAFSYNVALRFFASS--RPDTSLRLFLSMLRAELRPDAYTLPFLLLAAARCPSPAVARSA 137

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ + K+GL + DH  HSLITMY+  G   +AR+VFD I  RD+VSWNS++  Y +    
Sbjct: 138 HAFLEKLGLRDHDHTVHSLITMYSCLGDHLTARRVFDGIPHRDVVSWNSIMKAYER---- 193

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
                                      +C D G+LVLGKWVE +V    M+++  +GSAL
Sbjct: 194 --------------------------AACRDAGNLVLGKWVEEWVRSAGMEVDSLIGSAL 227

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY KCG +  ARRVFD + NKDVV WNAMIT YAQNG+SNEAI LF+ M+ AG+ PDK
Sbjct: 228 VGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRPDK 287

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           ITL+GVLS+CA++GAL+LG  +D YA  RGL  +++           CG ++ A  VF  
Sbjct: 288 ITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGK 347

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  NE SWNA+I  LAFNGR ++A+  FE M  E G  +P+D+TFIGVLSACVHAGL++
Sbjct: 348 MPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKGL-QPDDITFIGVLSACVHAGLLE 406

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            GRRLF  ++  F +IPK EHYSC+VDL ARAGHL  AWDF+E+MP KVD ++LGALL A
Sbjct: 407 YGRRLFSSLTPVFKIIPKIEHYSCIVDLLARAGHLEAAWDFIEKMPGKVDAVMLGALLAA 466

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+K KN +V ++V+  ++++E +NS NYV+SSKI+A     D+SA+M  LMRE+GV+KTP
Sbjct: 467 CRKCKNAEVGEKVINRIMKLEPTNSWNYVVSSKIYATSDKMDESARMIGLMRERGVNKTP 526

Query: 551 GCSWIGI 557
           GCSW+ +
Sbjct: 527 GCSWVEV 533


>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
          Length = 620

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/428 (53%), Positives = 307/428 (71%), Gaps = 13/428 (3%)

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ + KI L+  DH  HSLIT+Y+      +ARKVF+ I  RD+VSWN+M+  Y ++G  
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210

Query: 202 KEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            E   +   M ++   +P+ +TL  VL +C D GDLVLG+WVE +     M+ +  +GSA
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ MY KCG +  ARRVFD++++KDVV WNAMIT YAQNG+SNEAI LF+ MK AGV PD
Sbjct: 271 LVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPD 330

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
           KITL GVLSAC+++GAL+LG  +D YAS RGL ++++           CG +D A++VF 
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFR 390

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M   N  SWNA+I  LAFNG+  EA+  FE M  E G  +P+D+TFIGVLSACVHAGLV
Sbjct: 391 KMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGL-KPDDITFIGVLSACVHAGLV 449

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            +G+R F+ ++S F +IPK EHYSCMVDL AR+GHL E WDF+E++P+KVD ++LGALL 
Sbjct: 450 KDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLA 509

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           AC+K KN ++ +RV+  ++++E +NS NYV+SSKI+A+    DDSAKMR  MRE+GV+KT
Sbjct: 510 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKT 569

Query: 550 PGCSWIGI 557
           PGCSW+ I
Sbjct: 570 PGCSWVEI 577



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I   +  A+N MI G        + ++ L++ MK+ G+ PD  T   V  +C+
Sbjct: 284 ARRVFDSIIDKDVVAWNAMITGYAQNGMS-NEAISLFHNMKKAGVCPDKITLAGVLSACS 342

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            + AL  G  +       GL  + +V  +L+ MYA+CG LD A +VF ++R +++ SWN+
Sbjct: 343 AVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNA 402

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGK-WVEGFVVK 248
           +I G +  G   EA++ F  MR E+ L PD+IT + VL +C   G +  GK W      +
Sbjct: 403 LICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSE 462

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITA 295
            ++       S ++D+  + G L       + + +K D V   A++ A
Sbjct: 463 FQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAA 510


>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
 gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
 gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
          Length = 620

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/428 (53%), Positives = 307/428 (71%), Gaps = 13/428 (3%)

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ + KI L+  DH  HSLIT+Y+      +ARKVF+ I  RD+VSWN+M+  Y ++G  
Sbjct: 151 HALLEKIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMN 210

Query: 202 KEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            E   +   M ++   +P+ +TL  VL +C D GDLVLG+WVE +     M+ +  +GSA
Sbjct: 211 GEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSAGMETDSLVGSA 270

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ MY KCG +  ARRVFD++++KDVV WNAMIT YAQNG+SNEAI LF+ MK AGV PD
Sbjct: 271 LVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPD 330

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
           KITL GVLSAC+++GAL+LG  +D YAS RGL ++++           CG +D A++VF 
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFR 390

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M   N  SWNA+I  LAFNG+  EA+  FE M  E G  +P+D+TFIGVLSACVHAGLV
Sbjct: 391 KMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGL-KPDDITFIGVLSACVHAGLV 449

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            +G+R F+ ++S F +IPK EHYSCMVD  AR+GHL E WDF+E++P+KVD ++LGALL 
Sbjct: 450 KDGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLA 509

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           AC+K KN ++ +RV+  ++++E +NS NYV+SSKI+A+    DDSAKMR LMRE+GV+KT
Sbjct: 510 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKT 569

Query: 550 PGCSWIGI 557
           PGCSW+ I
Sbjct: 570 PGCSWVEI 577



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I   +  A+N MI G        + ++ L++ MK+ G+ PD  T   V  +C+
Sbjct: 284 ARRVFDSIIDKDVVAWNAMITGYAQNGMS-NEAISLFHNMKKAGVCPDKITLAGVLSACS 342

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            + AL  G  +       GL  + +V  +L+ MYA+CG LD A +VF ++R +++ SWN+
Sbjct: 343 AVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNA 402

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGK-WVEGFVVK 248
           +I G +  G   EA++ F  MR E+ L PD+IT + VL +C   G +  GK W      +
Sbjct: 403 LICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSE 462

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITA 295
            ++       S ++D   + G L       + + +K D V   A++ A
Sbjct: 463 FQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAA 510


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/527 (45%), Positives = 330/527 (62%), Gaps = 22/527 (4%)

Query: 44  HTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS 103
           H   L+N I + +F      D  D NY   LFHQI +PN + +N MIRGL +    +  +
Sbjct: 44  HDNYLLNMILRCSF------DFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSN-DCFDDA 96

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           ++ Y  M+  G  P+NFT+PFV  +CA LL L  GV +H+ V K G D D  V  SL+ +
Sbjct: 97  IEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCL 156

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           YA+CG L+ A KVFD+I ++++VSW ++ISGY  +G  +EA+++F R+ E    PD  T+
Sbjct: 157 YAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTI 216

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
           V VL +C  LGDL  G+W+   +++  M  N ++G++L+DMY KCG +  AR VFD M  
Sbjct: 217 VRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 276

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           KD+V+W AMI  YA NGL  EAI LF +M+   V PD  T++GVLSACA +GAL+LG+WV
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV 336

Query: 344 DKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
                +    +         D++  CGS+  A +VF+ M   + V WNA+IS LA NG  
Sbjct: 337 SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
             +  LF ++ K G   +P+  TFIG+L  C HAGLVDEGRR F+ M   F L P  EHY
Sbjct: 397 KISFGLFGQVEKLG--IKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHY 454

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
            CMVDL  RAG L EA   +  MP + + IV GALLGAC+  ++T +++  ++ L+E+E 
Sbjct: 455 GCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEP 514

Query: 513 SNSGNYVISSKIF-ANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            NSGNYV+ S I+ ANLK WD++AK+R  M EK + K PGCSWI +D
Sbjct: 515 WNSGNYVLLSNIYSANLK-WDEAAKVRLSMNEKRIQKPPGCSWIEVD 560


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/546 (40%), Positives = 346/546 (63%), Gaps = 20/546 (3%)

Query: 30  LLKKCPSTKTVQQIHTQML-INFIQKP----NFLLIRIIDL-KDFNYASLLFHQISRPNE 83
           +L++C + + + +IH  ++    + KP    N L    I L    +YA  +F QI  P+ 
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDS 89

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
            A+N+MIRG T   Q    ++ L+ +M    ++PD FT+P +   C+ L AL+ G  +H+
Sbjct: 90  PAYNIMIRGFTLK-QSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHA 148

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            + K G      V ++LI MYA CG+++ AR+VFDE+ ER++ +WNSM +GY+K G  +E
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEE 208

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            V+LF  M E +   DE+TLVSVL +CG L DL LG+W+  +V +  +  N  + ++L+D
Sbjct: 209 VVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVD 268

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG +  ARR+FD M  +DVV W+AMI+ Y+Q     EA+ LF+ M+ A ++P++IT
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
           ++ +LS+CA +GAL+ GKWV  +  ++ ++  +            CGS++ +++VF  MP
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
           V N +SW  +I  LA NG+  +AL  F  M ++     PNDVTFIGVLSAC HAGLVDEG
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKN--VEPNDVTFIGVLSACSHAGLVDEG 446

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           R LF  MS  FG+ P+ EHY CMVD+  RAG + EA+ F++ MP + + ++   LL +C+
Sbjct: 447 RDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCK 506

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
             KN ++ +  ++ L+ +E ++SG+Y++ S I+A++  W+D+ K+R  M+EKG+ KTPGC
Sbjct: 507 VHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGC 566

Query: 553 SWIGID 558
           S I +D
Sbjct: 567 SLIELD 572


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/553 (43%), Positives = 335/553 (60%), Gaps = 24/553 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK---------DFNYASLLFHQ 77
            LS L+ C S K ++QIH   +I  +  P+  L     L          D  YA  L  Q
Sbjct: 25  FLSTLQTCKSIKGLKQIHAS-IIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQ 83

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +  PN   +N +IRGL T+       L +Y QM   G+ PDN+T PFV  +CA   A+  
Sbjct: 84  LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 143

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH    K+GL  D +VS++L+ MYA C  + SARKVFD   +RDLVSW +MI GY K
Sbjct: 144 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 203

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFY 256
           MG+A+E V LF  M  E    D +TLV VL SC  LGDL LG+ +  ++++N  ++L+ +
Sbjct: 204 MGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVF 263

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+AL+DMY KCG    AR+VF  M  K+VV+WN+MI+  AQ G   E++ +F +M+  G
Sbjct: 264 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 323

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V PD +TL+ VL++CA++G L+LGKWV  Y  +  +R D F           CGSID A 
Sbjct: 324 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 383

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VF+ M   +  S+ AMI  LA +G+  +AL LF  M K G    P++VTF+GVL+AC H
Sbjct: 384 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMG--IEPDEVTFVGVLTACSH 441

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            GLV+EGR+ F+ MS+ + L P+ EHY CMVDL  RAG ++EA +F+  MP + D  VLG
Sbjct: 442 VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLG 501

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           ALLGAC+     ++ + VM+ + +IE    G YV+ S I+++   W D+ K+R  M+E+ 
Sbjct: 502 ALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERN 561

Query: 546 VSKTPGCSWIGID 558
           + KTPGCS I +D
Sbjct: 562 LEKTPGCSSIELD 574


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/544 (40%), Positives = 333/544 (61%), Gaps = 18/544 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYA 85
           L++     K ++ IH  +L   + +  +LL +++    +  + NY+  +  Q   PN + 
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           FN MIRGL      +  S+++Y+ M++ GL PD+FT+PFV  +CA +L    GV +HS V
Sbjct: 76  FNTMIRGLVLN-DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLV 134

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K G + D  V  SLI +Y +CG +D+A KVFD+I +++  SW + ISGY  +G  +EA+
Sbjct: 135 VKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAI 194

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           ++F R+ E    PD  +LV VL +C   GDL  G+W++ ++ +N M  N ++ +AL+D Y
Sbjct: 195 DMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFY 254

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
           GKCG +  AR VFD M+ K++V+W++MI  YA NGL  EA+ LF +M   G+ PD   ++
Sbjct: 255 GKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMV 314

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVT 374
           GVL +CA +GAL+LG W     +               D++  CG +D A +VF  M   
Sbjct: 315 GVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKK 374

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           + V WNA IS LA +G   +AL LF +M K G   +P+  TF+G+L AC HAGLV+EGRR
Sbjct: 375 DRVVWNAAISGLAMSGHVKDALGLFGQMEKSG--IKPDRNTFVGLLCACTHAGLVEEGRR 432

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
            F+ M   F L P+ EHY CMVDL  RAG L EA   ++ MP + + IV GALLG C+  
Sbjct: 433 YFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           ++T + + V++ L+ +E  +SGNYV+ S I+A    W+++AK+R++M E+GV K PG SW
Sbjct: 493 RDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSW 552

Query: 555 IGID 558
           I +D
Sbjct: 553 IEVD 556


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 340/585 (58%), Gaps = 52/585 (8%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFH 76
           L    LSLL+KC S   ++QI +QM++  + +  F   R+I      + +D +Y + +  
Sbjct: 5   LINPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILF 64

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLAL 135
               PN +++NV IRG   + +    ++ LY ++ +  G KPDN+TYP +F +CA L  +
Sbjct: 65  NTRNPNTFSWNVAIRGFLDS-ENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLI 123

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +   V  +G D D  VS+++I +   CG LD ARK+FD+   RDLVSWNSMI+GY
Sbjct: 124 RMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY 183

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            + G+A EA+  +  M+ E   PDE+T++ V+ SC  L DL LG+    ++ +N + L  
Sbjct: 184 VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTV 243

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL-------------- 301
            + +AL+DMY KCG L  AR++FD+M NK +V+W  M+  YAQ+GL              
Sbjct: 244 PLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDK 303

Query: 302 -----------------SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
                              EA+ LFN M+   +NPD++T++  LSAC+ +GALD+G W+ 
Sbjct: 304 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 363

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            Y  +  L  ++            CG I  A++VF+++P  N ++W A+IS LA +G AH
Sbjct: 364 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 423

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            A+  F  M     +  P++VTF+G+LSAC H GLV+EGR+ F  MSS F L PK +HYS
Sbjct: 424 GAIAYFSEMIDN--SVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYS 481

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVDL  RAG L EA + ++ MP + D +V GAL  AC+   N  + +R    LL+++  
Sbjct: 482 CMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPH 541

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +SG YV+ + ++   +MW ++ K R LMR++GV KTPGCS I ++
Sbjct: 542 DSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVN 586


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/599 (37%), Positives = 339/599 (56%), Gaps = 55/599 (9%)

Query: 12  LAFTELNDPS---LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL--- 65
           L F   +DP    L     L+LL  C S + ++QIH+Q++   +    F L ++I+    
Sbjct: 17  LHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAI 76

Query: 66  ---KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
               + +YA LLF  I +PN++ +N MIRG + +      ++  Y +M   G++P+++T+
Sbjct: 77  SPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVG-AIDFYVRMLLCGVEPNSYTF 135

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL------------ 170
           PF+  SCA + A   G  +H  V K+GL+ D  V  SLI MYA+ G+L            
Sbjct: 136 PFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSL 195

Query: 171 -------------------DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
                              D AR++F+EI  RD VSWN+MI+GY++ G  +EA+  F  M
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
           +     P+E T+V+VL +C   G L LG WV  ++  + +  N  + +ALIDMY KCG L
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             AR +F+ +  KD+++WN MI  Y+      EA+ LF +M+ + V P+ +T + +L AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375

Query: 332 ASIGALDLGKWVDKYASQR--GLRH--------DIF--CGSIDDALKVFEDMPVTNEVSW 379
           A +GALDLGKW+  Y  ++  GL +        D++  CG+I+ A +VF  M   +  SW
Sbjct: 376 AYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           NAMIS LA +G A+ AL LF +M  EG    P+D+TF+GVLSAC HAGLV+ GR+ F  M
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEG--FEPDDITFVGVLSACSHAGLVELGRQCFSSM 493

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
              + + PK +HY CM+DL  RAG   EA   ++ M  K D  + G+LLGAC+   N ++
Sbjct: 494 VEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVEL 553

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            +   + L E+E  N G YV+ S I+A    WDD A++R  + +KG+ K PGCS I +D
Sbjct: 554 GEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVD 612


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 329/551 (59%), Gaps = 24/551 (4%)

Query: 29  SLLKKC-----PSTKTVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQIS 79
           S LKKC      S    +Q H  +L   + +     N LL   +      YA+++F Q  
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH-G 138
            PN + +N +IRG+ +    +  ++ +Y  M++ G  PDNFT+PFV  +C  L    H G
Sbjct: 63  HPNIFLYNTLIRGMVSN-DAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVG 121

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           +S+HS V K G D D  V   L+ +Y++ G L  ARKVFDEI E+++VSW ++I GY + 
Sbjct: 122 LSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIES 181

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G   EA+ LF  + E    PD  TLV +L +C  +GDL  G+W++G++ ++    N ++ 
Sbjct: 182 GCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVA 241

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L+DMY KCG++  ARRVFD MV KDVV W+A+I  YA NG+  EA+ +F  M+   V 
Sbjct: 242 TSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVR 301

Query: 319 PDKITLIGVLSACASIGALDLGKWV------DKYASQRGLRHDIF-----CGSIDDALKV 367
           PD   ++GV SAC+ +GAL+LG W       D++ S   L   +      CGS+  A +V
Sbjct: 302 PDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEV 361

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ M   + V +NA+IS LA  G    A  +F +M K G   +P+  TF+G+L  C HAG
Sbjct: 362 FKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVG--MQPDGNTFVGLLCGCTHAG 419

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           LVD+G R F  MSS F + P  EHY CMVDL ARAG L EA D +  MP + + IV GAL
Sbjct: 420 LVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGAL 479

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LG C+  K+T +++ V++ L+E+E  NSG+YV+ S I++    WD++ K+R+ + +KG+ 
Sbjct: 480 LGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQ 539

Query: 548 KTPGCSWIGID 558
           K PGCSW+ +D
Sbjct: 540 KLPGCSWVEVD 550


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/534 (39%), Positives = 321/534 (60%), Gaps = 18/534 (3%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           ++ IH ++L   + + N+LL  I+    D    NY+ L+F Q+  PN + +N MIRGL +
Sbjct: 32  LKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
               +  ++ LY  M+  G  P+NFT PFV  +CA  L +  G+ +HS + K G D D  
Sbjct: 92  K-DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V  SL+++Y +C   D A KVFD+I ++++VSW ++I+GY   G+ +EA+  F ++ E  
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  +LV VL +C  LGD   G+W++ ++  + M  N ++ ++L+DMY KCG L  A 
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +F AM  KD+V+W+ MI  YA NGL  +A+ LF +M+   + PD  T++GVLSACA++G
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 336 ALDLGKWV------DKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           ALDLG W       +++ S   L   +      CGS+  A ++F  M   + V WNAM+ 
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMV 390

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
            L+ NG A     LF  + K G   RP++ TFIG+L  C H G V+EGR+ F+ M   F 
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHG--IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFS 448

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           L P  EHY CMVDL  RAG L+EA   +  MP K + +V GALLG C+  K+T ++++V+
Sbjct: 449 LTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVL 508

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + L+E+E  NSGNYV  S I++    W+++ K+R+ M+E+ + K   CSWI ID
Sbjct: 509 KKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/534 (39%), Positives = 321/534 (60%), Gaps = 18/534 (3%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           ++ IH ++L   + + N+LL  I+    D    NY+ L+F Q+  PN + +N MIRGL +
Sbjct: 32  LKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
               +  ++ LY  M+  G  P+NFT PFV  +CA  L +  G+ +HS + K G D D  
Sbjct: 92  K-DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVF 150

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V  SL+++Y +C   D A KVFD+I ++++VSW ++I+GY   G+ +EA+  F ++ E  
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  +LV VL +C  LGD   G+W++ ++  + M  N ++ ++L+DMY KCG L  A 
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +F AM  KD+V+W+ MI  YA NGL  +A+ LF +M+   + PD  T++GVLSACA++G
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 336 ALDLGKWV------DKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           ALDLG W       +++ S   L   +      CGS+  A ++F  M   + V WNAM+ 
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMV 390

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
            L+ NG A     LF  + K G   RP++ TFIG+L  C H G V+EGR+ F+ M   F 
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHG--IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFS 448

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           L P  EHY CMVDL  RAG L+EA   +  MP K + +V GALLG C+  K+T ++++V+
Sbjct: 449 LTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVL 508

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + L+E+E  NSGNYV  S I++    W+++ K+R+ M+E+ + K   CSWI ID
Sbjct: 509 KKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/525 (40%), Positives = 314/525 (59%), Gaps = 31/525 (5%)

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNF 120
           I + +D +Y + +      PN +++NV IRG   + +    ++ LY ++ +  G KPDN+
Sbjct: 22  ISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDS-ENPREAVVLYKRVLQCDGTKPDNY 80

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TYP +F +CA L  +  G  +   V  +G D D  VS+++I +   CG LD ARK+FD+ 
Sbjct: 81  TYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKS 140

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
             RDLVSWNSMI+GY + G+A EA+  +  M+ E   PDE+T++ V+ SC  L DL LG+
Sbjct: 141 CVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGR 200

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----------------K 284
               ++ +N + L   + +AL+DMY KCG L  AR++FD+M N                K
Sbjct: 201 ESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDK 260

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           DVV WNAMI  Y       EA+ LFN M+   +NPD++T++  LSAC+ +GALD+G W+ 
Sbjct: 261 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 320

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            Y  +  L  ++            CG I  A++VF+++P  N ++W A+IS LA +G AH
Sbjct: 321 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 380

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            A+  F  M     +  P++VTF+G+LSAC H GLV+EGR+ F  MSS F L PK +HYS
Sbjct: 381 GAIAYFSEMIDN--SVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYS 438

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVDL  RAG L EA + ++ MP + D +V GAL  AC+   N  + +R    LL+++  
Sbjct: 439 CMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPH 498

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +SG YV+ + ++   +MW ++ K R LMR++GV KTPGCS I ++
Sbjct: 499 DSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVN 543


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/577 (38%), Positives = 333/577 (57%), Gaps = 48/577 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           LLSLL+   S   + QIH Q LI+ +     L+ ++IDL   +YA  +  Q   P ++++
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSW 61

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N +IR  T       +SL LY +M R   KP NFT+PFV  +C+ L ++  G  +H+ V 
Sbjct: 62  NSLIRAYTVHGSP-QNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVL 120

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           ++G   D  V +SLI MY +C +LDSAR  +D++  RD VSWNS+ISGY + G  ++A +
Sbjct: 121 RLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARD 180

Query: 207 LFGRM-----------------REEEFL-----------------PDEITLVSVLGSCGD 232
           LF  M                 +E +F+                 P+  T+V +L +C  
Sbjct: 181 LFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACST 240

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L +  +G+++  F+  NK+ LN  + +ALIDMY KCG +  A R+FD +  K++ +WNA+
Sbjct: 241 LCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAI 300

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           IT   Q GL  EAI L+  MK   V P++ITL+ VLSACA +GAL+LG+ V  Y  + GL
Sbjct: 301 ITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGL 360

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             ++            CG IDDA  +F      +   WNAMI  LA++G   ++L +F +
Sbjct: 361 DLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQ 420

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M + G   +PNDVTFIGVLSAC H+GLV+EGR  F  M+   GL PK EHY+CMVDL  R
Sbjct: 421 MVRAG--VQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGR 478

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AGHL EA++ V+ M    D I+ GALL AC+  +N +++ ++ + ++  +  N G  ++ 
Sbjct: 479 AGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILL 538

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S I+A+   W D A++R  ++EK + K  GCSW+ +D
Sbjct: 539 SNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVD 575


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/553 (39%), Positives = 325/553 (58%), Gaps = 24/553 (4%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDF----NYASLLFHQ 77
           L+  LL  +K C + +  +QIH Q++ + +   +F+  ++++   +F    +YA     Q
Sbjct: 4   LKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQ 63

Query: 78  -ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
             +R   + FN +I G     +    ++ +Y +M R G  PD FT+P +  +C+N     
Sbjct: 64  GNTRLGSFPFNSLINGYVGG-EFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSR 122

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  VH  V K+GL  D +V +SLI  Y  CG    A KVFDE+  RD+VSWNS+ISG+ 
Sbjct: 123 EGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFM 182

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           K G+  EA+ +F RM  E   P   TLVSVL +C   GDL  GK + G V++ +  +N  
Sbjct: 183 KAGHFDEAISVFFRMDVE---PSMTTLVSVLAACARNGDLCTGKGIHG-VIERRFKVNLV 238

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+A++DMY K G    A+ +FD +  +D+V+W  MIT   Q+    +++ LF+ M+  G
Sbjct: 239 LGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLG 298

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           ++PD I L  VLSACAS+G LD G WV +Y +QRG++ DI            CG I+ AL
Sbjct: 299 ISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMAL 358

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K+F  M   N  +WNA++  LA +G  HEAL LFE M   G   +PN++TF+ +L+AC H
Sbjct: 359 KIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISG--VKPNEITFLAILTACCH 416

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            GLVDEGR+ FD MS  + L+PK EHY CM+DL+ RAG L EA +    MP K D ++ G
Sbjct: 417 CGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWG 476

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
            LL AC    N ++S R+   +LE++  +SG +V+ S I A  + W +  ++R LM+++G
Sbjct: 477 LLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRG 536

Query: 546 VSKTPGCSWIGID 558
           V K PG S I +D
Sbjct: 537 VRKAPGSSVIEVD 549


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/580 (37%), Positives = 327/580 (56%), Gaps = 51/580 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISR 80
           L+SLL+ C S   +QQ+H Q +   +     L  R++      +  DF YA  LF +I  
Sbjct: 21  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN + +N MIRG +         + LY +M R G+KPD +T+PF+F      +AL +G  
Sbjct: 81  PNLFIWNTMIRGYSR-LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 139

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V K GL  +  V  +L+ MY  CG+LD+AR VFD   + D+++WN +IS Y+K+G 
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +E+  LF  M +++ LP  +TLV VL +C  L DL  GK V  +V   K++ N  + +A
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 259

Query: 261 LIDMYGKCGALVPA-------------------------------RRVFDAMVNKDVVTW 289
           +IDMY  CG +  A                               R  FD M  KD V+W
Sbjct: 260 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 319

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
            AMI  Y ++    EA+ LF  M+   V PD+ T++ VL+ACA +GAL+LG+W+  Y  +
Sbjct: 320 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 379

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
             +++D+F           CG +D A  +F +M   ++ +W AMI  LA NG   +AL +
Sbjct: 380 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDM 439

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  M K   +  P+++T+IGVLSAC H GLVD+GR+ F  M+S  G+ P   HY C+VDL
Sbjct: 440 FSNMLK--ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
            ARAG L EA++ +E MP K + IV GALL  C+  + +D+++ V++ +LE+E  N   Y
Sbjct: 498 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 557

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           V+   I+A  K W+D  ++R +M +KG+ KTPGCS I ++
Sbjct: 558 VLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMN 597


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 332/580 (57%), Gaps = 51/580 (8%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK------DFNYASLLFHQISRP 81
           L LL KC S +T +QIH  ++   +    F L ++I+        D +YA  LF+ I  P
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N + +N MIRGL+ +    + +L  + +M   G++P+++T+PF+  SCA L + + G  +
Sbjct: 93  NLFIWNSMIRGLSMSLSP-ALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI 151

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKL------------------------------- 170
           H+ V K+G   D  +  SLI MYA+ G++                               
Sbjct: 152 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 211

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           D AR++FDE+  +D+VSWN+MI+GY++MG +KEA+ LF  MR+    P+E T+VSVL +C
Sbjct: 212 DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSAC 271

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
                L LG  +  ++    +  N  + +ALIDMY KCG L  AR +FD M+ +DV++WN
Sbjct: 272 AQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWN 331

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            MI  Y       EA+ LF  M  +GV P +IT + +L +CA +GA+DLGKW+  Y ++ 
Sbjct: 332 VMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKN 391

Query: 351 ---------GLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
                        D++  CG+I  A +VF+ M + +  SWNAMI  LA +G+A +A  LF
Sbjct: 392 FNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELF 451

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            +MS +G    PN++TF+G+LSAC HAGLVD G++ F  M   + + PKS+HY CM+DL 
Sbjct: 452 SKMSSDG--IEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLL 509

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RAG   EA   ++ M  K D  + G+LLGAC+     ++ + V + L E+E  N G YV
Sbjct: 510 GRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYV 569

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + S I+A    WDD A++R  + ++G+ K PGC+ I +D+
Sbjct: 570 LLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDN 609


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 326/580 (56%), Gaps = 51/580 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISR 80
           L+SLL+ C S   +QQ+H Q +   +     L  R++      +  DF YA  LF +I  
Sbjct: 42  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 101

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN + +N MIRG +         + LY +M R G+KPD +T+PF+F      +AL +G  
Sbjct: 102 PNLFIWNTMIRGYSR-LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 160

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V K GL  +  V  +L+ MY  CG+LD+AR VFD   + D+++WN +IS Y+K+G 
Sbjct: 161 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 220

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +E+  LF  M +++ LP  +TLV VL +C  L DL  GK V  +V   K++ N  + +A
Sbjct: 221 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 280

Query: 261 LIDMYGKCGALVPA-------------------------------RRVFDAMVNKDVVTW 289
           +IDMY  CG +  A                               R  FD M  KD V+W
Sbjct: 281 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 340

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
            AMI  Y ++    EA+ LF  M+   V PD+ T++ VL+ACA +GAL+LG+W+  Y  +
Sbjct: 341 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 400

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
             +++D+F           CG +D A  +F +M   ++ +W AMI  LA NG   +AL +
Sbjct: 401 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDM 460

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  M K   +  P+++T+IGVLSAC H GLVD+GR+ F  M+S  G+ P   HY C+VDL
Sbjct: 461 FSNMLK--ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
            ARAG L EA++ +E MP K + IV GALL  C+  + +D+++ V++ +LE+E  N   Y
Sbjct: 519 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 578

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           V+   I+A  K W+D  ++R +M +KG+ K PGCS I ++
Sbjct: 579 VLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMN 618


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 332/589 (56%), Gaps = 55/589 (9%)

Query: 12  LAFTELNDPS---LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL--- 65
           L F   +DP    L     L+LL  C S + ++QIH+Q++   +    F L ++I+    
Sbjct: 17  LHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAI 76

Query: 66  ---KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
               + +YA LLF  I +PN++ +N MIRG + +      ++  Y +M   G++P+++T+
Sbjct: 77  SPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVG-AIDFYVRMLLCGVEPNSYTF 135

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL------------ 170
           PF+  SCA + A   G  +H  V K+GL+ D  V  SLI MYA+ G+L            
Sbjct: 136 PFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSL 195

Query: 171 -------------------DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
                              D AR++F+EI  RD VSWN+MI+GY++ G  +EA+  F  M
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
           +     P+E T+V+VL +C   G L LG WV  ++  + +  N  + +ALIDMY KCG L
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             AR +F+ +  KD+++WN MI  Y+      EA+ LF +M+ + V P+ +T + +L AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375

Query: 332 ASIGALDLGKWVDKYASQR--GLRH--------DIF--CGSIDDALKVFEDMPVTNEVSW 379
           A +GALDLGKW+  Y  ++  GL +        D++  CG+I+ A +VF  M   +  SW
Sbjct: 376 AYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           NAMIS LA +G A+ AL LF +M  EG    P+D+TF+GVLSAC HAGLV+ GR+ F  M
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEG--FEPDDITFVGVLSACSHAGLVELGRQCFSSM 493

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
              + + PK +HY CM+DL  RAG   EA   ++ M  K D  + G+LLGAC+   N ++
Sbjct: 494 VEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVEL 553

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            +   + L E+E  N G YV+ S I+A    WDD A++R  + +KG+ K
Sbjct: 554 GEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 327/602 (54%), Gaps = 60/602 (9%)

Query: 14  FTELNDPS---LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----- 65
           F   +DP    L     L+LL KCP   +++QIH+ ++ + +    F   ++I+      
Sbjct: 12  FLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSP 71

Query: 66  -KDFNYASLLFHQISR--PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
            +D +YA  LFH I    PN + +N +IR  +      S SL L+ QM   GL P++ T+
Sbjct: 72  SRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTS-SLHLFSQMLHSGLYPNSHTF 130

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL------------ 170
           P +F SCA   A +    +H+   K+ L    HV  SLI MY++ G+L            
Sbjct: 131 PSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTL 190

Query: 171 -------------------DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
                              D AR++FDEI  +D+VSWN+MI+GY + G  +EA+  F RM
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
           +E +  P++ T+VSVL +CG L  L LGKW+  +V       N  + +AL+DMY KCG +
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             AR++FD M +KDV+ WN MI  Y    L  EA++LF  M    V P+ +T + VL AC
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPAC 370

Query: 332 ASIGALDLGKWVDKYASQR----------GLRHDIF-----CGSIDDALKVFEDMPVTNE 376
           AS+GALDLGKWV  Y  +            L   I      CG ++ A +VF  M   + 
Sbjct: 371 ASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSL 430

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
            SWNAMIS LA NG A  AL LFE M  EG   +P+D+TF+GVLSAC  AG V+ G R F
Sbjct: 431 ASWNAMISGLAMNGHAERALGLFEEMINEG--FQPDDITFVGVLSACTQAGFVELGHRYF 488

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
             M+  +G+ PK +HY CM+DL AR+G   EA   +  M  + D  + G+LL AC+    
Sbjct: 489 SSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQ 548

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
            +  + V + L E+E  NSG YV+ S I+A    WDD AK+R  + +KG+ K PGC+ I 
Sbjct: 549 VEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIE 608

Query: 557 ID 558
           ID
Sbjct: 609 ID 610


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 333/546 (60%), Gaps = 20/546 (3%)

Query: 30  LLKKCPSTKTVQQIH-----TQMLINFIQKPNFLLIRIIDLKD-FNYASLLFHQISRPNE 83
           +L++C + K +QQ+H     T+ L++ I     L    + L D  +YA  +F+ I +P  
Sbjct: 27  ILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPES 86

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
            A+NVMIRGL    +   ++L L+ +M    ++ D FT+  V  +C+ + AL  G  VH+
Sbjct: 87  SAYNVMIRGLAFK-RSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHA 145

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            + K G   ++ V ++LI MYA CG++  AR VFD + ER +V+WNSM+SGY+K G   E
Sbjct: 146 LILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDE 205

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            V+LF ++ E     D++T++SVL +CG L +L +G+ +  ++V   +  N  + ++LID
Sbjct: 206 VVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLID 265

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG +  AR++FD M  +DVV W+AMI+ YAQ     EA+ LF+ M+   V P+++T
Sbjct: 266 MYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVT 325

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
           ++ VL +CA +GA + GKWV  Y  ++ ++  +            CG ID +++VF++M 
Sbjct: 326 MVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMS 385

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             N  +W A+I  LA NG    AL  F  M +     +PNDVTFIGVLSAC HA LVD+G
Sbjct: 386 FKNVFTWTALIQGLANNGEGKMALEFFSSMLEND--VKPNDVTFIGVLSACSHACLVDQG 443

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           R LF+ M   F + P+ EHY CMVD+  RAG L EA+ F++ MP   + +V   LL +C+
Sbjct: 444 RHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCR 503

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
             KN +++++ ++ +  +E ++SG+Y++ S  +A +   +D+ ++R+L++EK + K PGC
Sbjct: 504 AHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGC 563

Query: 553 SWIGID 558
           S I +D
Sbjct: 564 SLIELD 569


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/502 (41%), Positives = 312/502 (62%), Gaps = 15/502 (2%)

Query: 69  NYASLLFHQI-SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
            Y  L+FH+  +  N + +N MIRG+ +   ++++++ LY  M +  + PD+FT+ FV  
Sbjct: 54  QYPILVFHKTPTNSNTFLYNTMIRGMVSK-DRFNNAVHLYASMHKAAIVPDSFTFSFVLK 112

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +CA L   + GV +HS VFK G D D  V  +++  Y++CG L  A KVFD++  +++VS
Sbjct: 113 ACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVS 172

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  MI G  + G  +EAV+LF  + E    PD   +V VL +C  LGDL  G+W++  + 
Sbjct: 173 WTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMR 232

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +  +  N ++ ++L+DMY KCG++  AR VFD MV KD+V W+AMI  YA NGL  EAI 
Sbjct: 233 ECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIE 292

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV------DKYASQRGLRHDIF---- 357
           LF  M+   V PD   ++G LS+CAS+GAL+LG W       +++ S   L   +     
Sbjct: 293 LFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYA 352

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CGS+++AL V++ M   + V +NA+IS LA  G+   A  +F +M K G    PN+ TF
Sbjct: 353 KCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFG--IPPNEHTF 410

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +G+L  C HAGLVD+GR  F+ MS  F + P  EHY CMVDL ARAG L EA + ++ MP
Sbjct: 411 VGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMP 470

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            K + IV G+LLG C+  + T +++ V++ L+E+E  NSG+YV+ S I++  + WD++ K
Sbjct: 471 MKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEK 530

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R+ + EKG+ K PG SW+ +D
Sbjct: 531 IRSTVNEKGMQKLPGYSWVEVD 552


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 330/588 (56%), Gaps = 53/588 (9%)

Query: 21  SLLREK-LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASL 73
           S +RE  LLS+L++C S   ++QI  QM+   + +  F   R++      + K+ +Y + 
Sbjct: 53  SFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTR 112

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANL 132
           + ++I   N +++N  IRG   +         LY +M   G LKPDN TYP +   C   
Sbjct: 113 ILYRIKELNVFSWNAAIRGYVES-GDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQ 171

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            +   G+ V   V K G + D  V ++ ITM   CG+L  A  VF++ R RDLV+WNSMI
Sbjct: 172 YSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMI 231

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +G  K G A EA++++  M  E+  P+EIT++ ++ SC  + DL LGK    ++ ++ ++
Sbjct: 232 TGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLE 291

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL----------- 301
               + +AL+DMY KCG L+ AR +FD M  K +V+W  M+  YA+ G            
Sbjct: 292 FTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKI 351

Query: 302 --------------------SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
                                 EA+ LF+ M+   + PDK+T++  LSAC+ +GALD+G 
Sbjct: 352 PEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI 411

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W+  Y  +  L  D+            CG+I  AL+VFE++P  N ++W A+I  LA +G
Sbjct: 412 WIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHG 471

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            A +AL  F +M   G    P+++TF+GVLSAC H GLV+EGR+ F  MSS F + PK +
Sbjct: 472 NAQDALSYFSKMIHIG--IVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLK 529

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HYSCMVDL  RAGHL EA + V+ MP   D  VLGAL  AC+   N  + +R    LLEI
Sbjct: 530 HYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEI 589

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +  +SGNYV+ + +++  KMW ++   R LM +KGV KTPGCS + I+
Sbjct: 590 DPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 322/561 (57%), Gaps = 35/561 (6%)

Query: 28  LSLLKKCPSTKTVQQIHTQML-------------INFIQKPNFLLIRIIDLKD----FNY 70
           L LL  C S + ++QIH  ++             I+   K   LL + + L D      Y
Sbjct: 30  LLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNLWY 89

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS L +   +   Y FN +I+ L+T+   ++H   LY QM  +GL PD +T P++  +C+
Sbjct: 90  ASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACS 149

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              A    + +H+   K GL  +  V ++L+  YA  G +++  KVFD+    DL+SW +
Sbjct: 150 QSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTT 209

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I  YSKMGY  EA+  F RM       D +TLV VL +C  LGD  LGK +  ++  + 
Sbjct: 210 LIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHL 266

Query: 251 MDL--NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
            D+  + ++G+AL+DMY KCG    AR++F  M  K++V+WN+MI+  A  GL  EA+ +
Sbjct: 267 FDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHM 326

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F RM+  G+ PD +TL+GVL++CA++G L+LGKWV  Y  +  ++ D +           
Sbjct: 327 FRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAK 386

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CGSID A  VF+ M   +  S+ AMI   A +G+A  AL +F  M + G   RP+ VT +
Sbjct: 387 CGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMG--VRPDHVTLV 444

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVLSAC HAGL++EGRR F  MS  + L P++EHY CMVDL  RAG +SEA  F  +MP 
Sbjct: 445 GVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPI 504

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
             D  V G+LLGAC+     ++ + V+Q L+E+E    G Y++ S I+++   W D+ K 
Sbjct: 505 VPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKW 564

Query: 538 RALMREKGVSKTPGCSWIGID 558
           R  M++  + KTPGCS I +D
Sbjct: 565 RKAMKQNNIKKTPGCSSIEVD 585


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 330/588 (56%), Gaps = 53/588 (9%)

Query: 21  SLLREK-LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASL 73
           S +RE  LLS+L++C S   ++QI  QM+   + +  F   R++      + K+ +Y + 
Sbjct: 53  SFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTR 112

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANL 132
           + ++I   N +++N  IRG   +         LY +M   G LKPDN TYP +   C   
Sbjct: 113 ILYRIKELNVFSWNAAIRGYVES-GDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQ 171

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            +   G+ V   V K G + D  V ++ ITM   CG+L  A  VF++ R RDLV+WNSMI
Sbjct: 172 YSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMI 231

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +G  K G A EA++++  M  E+  P+EIT++ ++ SC  + DL LGK    ++ ++ ++
Sbjct: 232 TGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLE 291

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL----------- 301
               + +AL+DMY KCG L+ AR +FD M  K +V+W  M+  YA+ G            
Sbjct: 292 FTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKI 351

Query: 302 --------------------SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
                                 EA+ LF+ M+   + PDK+T++  LSAC+ +GALD+G 
Sbjct: 352 PEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI 411

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W+  Y  +  L  D+            CG+I  AL+VFE++P  N ++W A+I  LA +G
Sbjct: 412 WIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHG 471

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            A +AL  F +M   G    P+++TF+GVLSAC H GLV+EGR+ F  MSS F + PK +
Sbjct: 472 NAQDALSYFSKMIHIG--IVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLK 529

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HYSCMVDL  RAGHL EA + V+ MP   D  VLGAL  AC+   N  + +R    LLEI
Sbjct: 530 HYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEI 589

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +  +SGNYV+ + +++  KMW ++   R LM +KGV KTPGCS + I+
Sbjct: 590 DPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/555 (37%), Positives = 327/555 (58%), Gaps = 24/555 (4%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL--KDFNYASLLFHQIS 79
            L+ +LL+ + +C + ++++QIH  ++ + +    F+L ++ +   K   +    F  ++
Sbjct: 3   FLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLN 62

Query: 80  RPNEYA----FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           + + +     +N +I    ++    +  L +Y ++   G  PD +T+P V  +C   L +
Sbjct: 63  QTDLHVGTLPYNTLIAAYASSCTPKAAFL-VYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  VH    K+G   D +V +SL+  Y+ CGK   A +VFDE+  RD+VSW  +ISGY
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGY 181

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            + G   EA+ LF +M   + +P+  T VSVL +CG +G L +GK V G V K    +  
Sbjct: 182 VRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGL 238

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            +G+AL+DMY KC  L  AR++FD + ++D+V+W ++I+   Q     +++ LF  M+ +
Sbjct: 239 VVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQIS 298

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           GV PD+I L  VLSACAS+GALD G+WV +Y  ++G+  DI            CG I+ A
Sbjct: 299 GVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMA 358

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           L +F  +P  N  +WNA++  LA +G  HEAL  FE M   G   RPN+VTF+ +L+AC 
Sbjct: 359 LHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI--GAGIRPNEVTFLAILTACC 416

Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
           H+GLV EGR  F  ++S  F   P+ EHY CM+DL  RAG L EA+ F+  MP   D ++
Sbjct: 417 HSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLI 476

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            GALL AC+   N ++SQ ++  LLE++S +SG YV+ S I+A  + WDD  ++R LM++
Sbjct: 477 WGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKD 536

Query: 544 KGVSKTPGCSWIGID 558
           KG+ K PG S I +D
Sbjct: 537 KGIRKFPGSSVIEVD 551


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/553 (40%), Positives = 315/553 (56%), Gaps = 61/553 (11%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK---------DFNYASLLFHQ 77
            LS L+ C S K ++QIH   +I  +  P+  L     L          D  YA  L  Q
Sbjct: 40  FLSTLQTCKSIKGLKQIHAS-IIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQ 98

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +  PN   +N +IRGL T+       L +Y QM   G+ PDN+T PFV  +CA   A+  
Sbjct: 99  LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 158

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH    K+GL  D +VS++L+ MYA C  + SARKVFD   +RDLVSW +MI GY K
Sbjct: 159 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 218

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFY 256
           MG+A+E V L                                     ++++N  ++L+ +
Sbjct: 219 MGFAREGVGL-------------------------------------YIIRNSNVNLDVF 241

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+AL+DMY KCG    AR+VF  M  K+VV+WN+MI+  AQ G   E++ +F +M+  G
Sbjct: 242 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 301

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V PD +TL+ VL++CA++G L+LGKWV  Y  +  +R D F           CGSID A 
Sbjct: 302 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 361

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VF+ M   +  S+ AMI  LA +G+  +AL LF  M K G    P++VTF+GVL+AC H
Sbjct: 362 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMG--IEPDEVTFVGVLTACSH 419

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            GLV+EGR+ F+ MS+ + L P+ EHY CMVDL  RAG ++EA +F+  MP + D  VLG
Sbjct: 420 VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLG 479

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           ALLGAC+     ++ + VM+ + +IE    G YV+ S I+++   W D+ K+R  M+E+ 
Sbjct: 480 ALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERN 539

Query: 546 VSKTPGCSWIGID 558
           + KTPGCS I +D
Sbjct: 540 LEKTPGCSSIELD 552


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/550 (38%), Positives = 332/550 (60%), Gaps = 19/550 (3%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEY 84
           SLL      + + QIH Q++++ + +  FL+ + ++    + +  YA  +F +   P+ +
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF 135

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +IRG ++    +  ++++Y +M+  G+ PD FT P V  +C+ +  L  G  VH  
Sbjct: 136 LWNAIIRGYSSH-NFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQ 194

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           +F++G + D  V + L+ +YA+CG+++ AR VF+ + +R++VSW SMISGY + G   EA
Sbjct: 195 IFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEA 254

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + +FG+MR+    PD I LVSVL +  D+ DL  GK + G VVK  ++    +  +L  M
Sbjct: 255 LRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAM 314

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG ++ AR  FD M   +V+ WNAMI+ YA+NG +NEA+ LF  M    +  D IT+
Sbjct: 315 YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITV 374

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
              + ACA +G+LDL KW+  Y ++   R+D+F           CGS+D A +VF+    
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD 434

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + V W+AMI     +GR  +A+ LF  M + G    PNDVTF+G+L+AC H+GLV+EG 
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAG--VCPNDVTFVGLLTACNHSGLVEEGW 492

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            LF  M   +G+  + +HY+C+VDL  R+GHL+EA+DF+  MP +    V GALLGAC+ 
Sbjct: 493 ELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKI 551

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
            ++  + +   + L  ++  N+G+YV  S ++A+ ++WD  AK+R LMREKG+SK  G S
Sbjct: 552 YRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYS 611

Query: 554 WIGIDDPKQS 563
            I I+   Q+
Sbjct: 612 LIEINGKLQA 621


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 334/589 (56%), Gaps = 51/589 (8%)

Query: 16  ELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYA 71
           +L  P+   + L  LL +C S K ++ +H Q++++ +      L +++ L     D  YA
Sbjct: 33  QLKSPT--HQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYA 90

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            LLF QI +PN++ +N +IRG + +      SL L+ QM   G  P+ FT+PFV  +CA 
Sbjct: 91  HLLFDQIPQPNKFMYNHLIRGYSNSNDPMK-SLLLFRQMVSAGPMPNQFTFPFVLKACAA 149

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
                  V VH+   K+G+     V ++++T Y  C  + SAR+VFD+I +R +VSWNSM
Sbjct: 150 KPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSM 209

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+GYSKMG+  EA+ LF  M +     D  TLVS+L +     +L LG++V  ++V   +
Sbjct: 210 IAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGV 269

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS--------- 302
           +++  + +ALIDMY KCG L  A+ VFD M++KDVV+W +M+ AYA  GL          
Sbjct: 270 EIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNH 329

Query: 303 ----------------------NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
                                  EA+ LF+RM  +GV PD  TL+ +LS C++ G L LG
Sbjct: 330 MPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALG 389

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K    Y     +   +            CG++  A+ +F  MP  N VSWN +I ALA +
Sbjct: 390 KQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALH 449

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G   EA+ +F+ M   G    P+++TF G+LSAC H+GLVD GR  FD+M S+F + P  
Sbjct: 450 GFGEEAIEMFKSMQASG--LYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGV 507

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+CMVDL  R G L EA   +++MP K D +V GALLGAC+   N ++++++M+ LLE
Sbjct: 508 EHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLE 567

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +   NSG YV+ S +++  + WDD  K+R +M + G+ K    S+I ID
Sbjct: 568 LGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEID 616


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 327/592 (55%), Gaps = 60/592 (10%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-------LKDFNY 70
           N PSL      SLL  C + ++++ IH QM+   +   N+ L ++++            Y
Sbjct: 2   NHPSL------SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPY 55

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I  P    +N M RG   +    S +LKLY  M  LGL P+++T+PF+  SCA
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVS-ALKLYVCMVSLGLLPNSYTFPFLLKSCA 114

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV-------------- 176
              A   G  +H  V K G D D ++  SLI+MY + G+L+ A+KV              
Sbjct: 115 KSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTA 174

Query: 177 -----------------FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
                            FDEI  +D+VSWN+ ISGY++ G  KEA+ELF +M +    PD
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPD 234

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           E T+V+VL +C   G + LG+ V  ++  +    N  + +ALID+Y KCG L  A  +F 
Sbjct: 235 ESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQ 294

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            + NKDV++WN +I  Y    L  EA++LF  M  +G  P+ +T++ +LSACA +GA+D+
Sbjct: 295 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDI 354

Query: 340 GKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           G+W+  Y  +R         LR  +      CG I+ A +VF+ M   +  SWNAMI   
Sbjct: 355 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A +GRA+ A  +F RM K G    P+D+TF+G+LSAC H+G++D GR +F  M+  + L+
Sbjct: 415 AMHGRANAAFDIFSRMRKNG--IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLM 472

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           PK EHY CM+DL   +G   EA   +  M  + D ++  +LL AC+   N ++ +   Q 
Sbjct: 473 PKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQN 532

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L++IE  N G+YV+ S I+A  + W++ AK RAL+ +KG+ K PGCS I ID
Sbjct: 533 LIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEID 584


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/555 (39%), Positives = 319/555 (57%), Gaps = 28/555 (5%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQ 77
            DP  L +   +L+K    T + +  H+ +L      P  L           YA  LF  
Sbjct: 27  TDPRYLPQLHAALIKSGELTGSPKCFHS-LLEAAAASPTLL----------PYAVSLFRL 75

Query: 78  ISRP--NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLA 134
             RP  +   +NV++R L  A      +L L+ +M  +  + PD  T      SC+ +  
Sbjct: 76  GPRPPLSTPCYNVLMRALLHAGHP-EDALHLFVEMLDVASVCPDQHTVACALKSCSRMCT 134

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L+ G  + +   K GL  D  V  SLI MYA C  + +A+ +FD + E  +V WN++I+ 
Sbjct: 135 LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITA 194

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y K G   E VE+F  M E     DEITLVSV+ +CG +GD  LGKWV  +V +  +  N
Sbjct: 195 YMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRN 254

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             + +ALIDMY KCG L  ARR+FD M ++DVV W+AMI+ Y Q     EA+ LF+ M+ 
Sbjct: 255 RNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQL 314

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           A V P+ +T++ VLSACA +GAL+ GKWV  Y  ++ L   I            CG IDD
Sbjct: 315 AEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDD 374

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A++ FE MPV N  +W A+I  +A NGR  EAL LF  M K   +  P DVTFIGVL AC
Sbjct: 375 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRK--ASIEPTDVTFIGVLMAC 432

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H+ LV+EGRR FD M+  +G+ P++EHY C+VDL  RAG + EA+ F+  MP + + ++
Sbjct: 433 SHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVI 492

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             ALL +C   KN ++ +  ++ ++ +  S+SG+Y++ S I+A++  W ++A +R  M++
Sbjct: 493 WRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKD 552

Query: 544 KGVSKTPGCSWIGID 558
           +G+ KTPGCS I +D
Sbjct: 553 RGIEKTPGCSLIELD 567


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 319/553 (57%), Gaps = 26/553 (4%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFH 76
           L   LLSL +KC +   ++QIH QML   +    F   +I+      D     YA L+F+
Sbjct: 40  LHPCLLSL-EKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFN 98

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLAL 135
           QI  P  +  N +IRG T   +       L+YQ+  L GL PD FT+P +F SC     L
Sbjct: 99  QIPNPTTFTCNSIIRGYTN--KNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VL 153

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H    K+G   D ++ ++L+ MY+ CG L SARKVFD++  + +VSW +MI  Y
Sbjct: 154 CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 213

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           ++     EA++LF RM      P+EITLV+VL +C    DL   K V  ++ +  +  + 
Sbjct: 214 AQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHT 273

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            + SAL+D+Y KCG    AR +F+ M  K++  WN MI  + ++    EA+ LFN M+ +
Sbjct: 274 VLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 333

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           GV  DK+T+  +L AC  +GAL+LGKW+  Y  +  +  D+            CGSI+ A
Sbjct: 334 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 393

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           ++VF++MP  + ++W A+I  LA  G+  +AL LF  M  +    +P+ +TF+GVL+AC 
Sbjct: 394 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM--QMSEVKPDAITFVGVLAACS 451

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLV+EG   F+ M + +G+ P  EHY CMVD+  RAG ++EA D ++ MP   D  VL
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVL 511

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
             LL AC+   N  V++R  Q L+E++  N G YV+ S I++++K W+ + KMR LM E+
Sbjct: 512 VGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVER 571

Query: 545 GVSKTPGCSWIGI 557
            + K PGCS I +
Sbjct: 572 NIKKPPGCSAIEV 584


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 313/555 (56%), Gaps = 29/555 (5%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           DPS L +   +L+K    T + +  H+ +L      P  L           YA  LF   
Sbjct: 28  DPSYLPQLHAALIKSGELTGSAKSFHS-LLEAAAASPTLL----------PYAVSLFRLG 76

Query: 79  SRP--NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFVFISCANLLA 134
            RP  +   +NV++R    A      +L L+ +M         D  T      SC+ + A
Sbjct: 77  PRPPLSTPCYNVLMRAFLHAGHP-EDALHLFIEMLHAASACPADQHTAACALKSCSRMCA 135

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L+ G  V +   K GL  D  V  SLI MYA CG + +AR VFD   E  +V WN++++ 
Sbjct: 136 LDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAA 195

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y K G   E VE+F  M E     DE+TLVSV+ +CG +GD  LGKWV G V +  +  N
Sbjct: 196 YLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARN 255

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             + +AL+DMY KCG +  ARR+FD M ++DVV W+AMI+ Y Q     EA+ LF+ M+ 
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL 315

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           A V P+ +T++ VLSACA +GAL+ GKWV  Y  ++ L                CG IDD
Sbjct: 316 ARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDD 375

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A++ FE MPV N  +W A+I  +A NGR  EAL LF  M + G    P DVTFIGVL AC
Sbjct: 376 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAG--IEPTDVTFIGVLMAC 433

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H+ LV+EGRR FD M+  +G+ P+ EHY CMVDL  RAG + EA+ F+  MP + + ++
Sbjct: 434 SHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVI 493

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             ALL +C   +N  + +  ++ ++ +  S+SG+YV+ S I+A+   W D+A +R  M++
Sbjct: 494 WRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKD 553

Query: 544 KGVSKTPGCSWIGID 558
           +G+ KTPGCS I +D
Sbjct: 554 RGIEKTPGCSLIELD 568


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 335/589 (56%), Gaps = 51/589 (8%)

Query: 16  ELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYA 71
           EL  P+   + L  L+ +C S K ++ +H Q++++ +      L +++     L+D  YA
Sbjct: 30  ELKSPT--HQTLHYLIDQCISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYA 87

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
             LF QI +PN++ FN +I+G + +      SL LY +M   G+ P+ FT PFV  +CA 
Sbjct: 88  HKLFDQIPQPNKFMFNHLIKGYSNSSDPIK-SLLLYRRMVCDGILPNQFTIPFVLKACAA 146

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
                 GV VH+  FK+G+     V ++++ +Y  CG + SAR+VFD+I ER LVSWNSM
Sbjct: 147 KSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSM 206

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+GYSKMG ++EAV +F  M+E    PD  TLV +L      G+  LG++V   +V   +
Sbjct: 207 INGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGI 266

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA-------------- 297
           +++  + +AL+DMY KCG L  A+ VFD M++KDVV+W  MI AYA              
Sbjct: 267 EIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQ 326

Query: 298 -----------------QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
                            Q GL  EA+ LF RM  +GV  +  TL+ +LS+C+ +G L LG
Sbjct: 327 MPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALG 386

Query: 341 KWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K    Y     +           D++  CG++  A+ VF  MP  N VSWN +I ALA +
Sbjct: 387 KQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALH 446

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G   EA+ +FE+M   G    P+++TF G+LSAC H+GLVD G+  F++M+ +FG+ P  
Sbjct: 447 GYGKEAIEMFEKMQASG--VCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDV 504

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+CMVDL  R G L EA   +++MP K D +V  ALLGAC+   N  + +++M+ LLE
Sbjct: 505 EHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLE 564

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +   NSG YV+ S +++  + WDD   +  ++ + G+ K    S+I ID
Sbjct: 565 LGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEID 613



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 156/346 (45%), Gaps = 44/346 (12%)

Query: 11  HLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNY 70
           H+  T +   S++   L+ +  KC + K  + +  QML   +     ++    +    + 
Sbjct: 260 HMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDC 319

Query: 71  ASLLFHQISRPNEYAFNVMI-----RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           A   F+Q+   N  ++N +I      GL      Y+ ++ L+Y+M   G+  ++ T   +
Sbjct: 320 ALEFFNQMPGKNVVSWNSIIWCHVQEGL------YAEAVDLFYRMCDSGVMANDTTLVAI 373

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             SC+++  L  G   HS +F   +     + +++I MYA+CG L +A  VF  + E++ 
Sbjct: 374 LSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNA 433

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWN +I   +  GY KEA+E+F +M+     PDEIT   +L +C   G +  G+    F
Sbjct: 434 VSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ--HYF 491

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +   M+L F                          ++ DV  +  M+    + GL  EA
Sbjct: 492 EI---MNLTF-------------------------GISPDVEHYACMVDLLGRRGLLGEA 523

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           I L  +M    V PD +    +L AC + G L +GK + K   + G
Sbjct: 524 ISLIKKMP---VKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELG 566


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 338/589 (57%), Gaps = 56/589 (9%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
           LL+   +SLLK C S   ++QI   +    +Q+   +L +++       L DFNYA+ +F
Sbjct: 6   LLKGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIF 65

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           + I  P+ + +N+MI+         S ++ L+ Q++  G+ PDN+TYP+V      +  +
Sbjct: 66  NHIHHPSLFIYNLMIKAFVKRGSLRS-AISLFQQLRERGVWPDNYTYPYVLKGIGCIGEV 124

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H+ V K GL+ D +V +SL+ MYA  G ++   +VF+E+ ERD VSWN MISGY
Sbjct: 125 REGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGY 184

Query: 196 SKMGYAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            +    +EAV+++ RM+ E    P+E T+VS L +C  L +L LGK +  ++  N++DL 
Sbjct: 185 VRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIA-NELDLT 243

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMV-------------------------------N 283
             MG+AL+DMY KCG +  AR +FDAM+                               +
Sbjct: 244 PIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPS 303

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +DVV W AMI  Y Q     +AI LF  M+  GV PDK  ++ +L+ CA +GAL+ GKW+
Sbjct: 304 RDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWI 363

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             Y  +  ++ D             CG I+ +L++F  +   +  SW ++I  LA NG+ 
Sbjct: 364 HNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKT 423

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EAL LFE M   G   +P+D+TF+ VLSAC HAGLV+EGR+LF  MSS + + P  EHY
Sbjct: 424 SEALELFEAMQTCG--LKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHY 481

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVL---GALLGACQKQKNTDVSQRVMQLLLE 509
            C +DL  RAG L EA + V+++P++ +EI++   GALL AC+   N D+ +R+   L +
Sbjct: 482 GCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAK 541

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++SS+S  + + + I+A+   W+D  K+R+ M++ G+ K PG S I +D
Sbjct: 542 VKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVD 590


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 323/560 (57%), Gaps = 24/560 (4%)

Query: 20  PSLLREKLLS---LLKKCPSTKTVQQIHTQML-INFIQKPNF--LLIRIIDLK---DFNY 70
           PS    KL+S   L   C S    +Q H  +L  + +  P F   LI  + L    D NY
Sbjct: 4   PSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNY 63

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF Q+  P+ +  N MIRG   +   Y  ++ LYY M   G+  DN+TYPFV  +CA
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARSQNPYE-AVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L A+  G   H  V K G   D  V ++LI  Y  CG    A  VFDE   RD+V+WN 
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 191 MISGYSKMGYAKEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           MI+ +   G +++A +L   M + +   PDE+T+VS++ +C  LG+L  GK++  +  + 
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +D N  + +A++DMY KC  +  A+ VF+ +  KDV++W +M++  A++G   EA+ LF
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M+   +  D+ITL+GVLSACA  GALD GK++     +  +  D+            C
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GSID AL+VF  M V N  +WNA+I  LA +G   +A+ LF++M  E     P+DVTFI 
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQM--EHDKLMPDDVTFIA 420

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC HAGLVDEG  +F  M + F + P+ EHY C+VDL  RA  + +A  F+E MP K
Sbjct: 421 LLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK 480

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + ++   LLGAC+   + D+++++ + ++E+E  + G YV+ S ++A +  WD + K+R
Sbjct: 481 ANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLR 540

Query: 539 ALMREKGVSKTPGCSWIGID 558
             M+ KG+ KTPGCSWI ++
Sbjct: 541 KQMKNKGIEKTPGCSWIELN 560


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/600 (36%), Positives = 331/600 (55%), Gaps = 56/600 (9%)

Query: 12  LAFTELNDPSLL--REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL---- 65
           L+F++ + P  L      L+LL  C + +T++QIH+Q++   +   +F L ++I+     
Sbjct: 14  LSFSDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVS 73

Query: 66  --KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
              D +YA  LF  I  PN   +N MIRGL+++   +  +L+ Y  M   G +P+ +T+P
Sbjct: 74  PHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFL-ALEYYVHMISSGTEPNEYTFP 132

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL------------- 170
            +F SC  +   + G  VH+ V K+GL+ +  V  SLI MYA+ G+L             
Sbjct: 133 SIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR 192

Query: 171 ------------------DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
                             D AR++FDEI  RD+VSWN+MISGY++ G  +EA+  F  MR
Sbjct: 193 DAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR 252

Query: 213 EEEFLPDEITLVSVLGSCGDLGD-LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
             +  P+  T++SVL +C   G  L LG WV  ++    +  N  + + LIDMY KCG L
Sbjct: 253 RAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDL 312

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             A  +F+ + +K+VV+WN MI  Y       EA+ LF RM  + ++P+ +T + +L AC
Sbjct: 313 EEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPAC 372

Query: 332 ASIGALDLGKWVDKYASQ--RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           A++GALDLGKWV  Y  +  + +++ +            CG +  A ++F+ M   +  +
Sbjct: 373 ANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT 432

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WNAMIS  A +G    AL LF RM+ EG    P+D+TF+GVL+AC HAGL+  GRR F  
Sbjct: 433 WNAMISGFAMHGHTDTALGLFSRMTSEGFV--PDDITFVGVLTACKHAGLLSLGRRYFSS 490

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M   + + PK  HY CM+DL+ RAG   EA   V+ M  K D  +  +LLGAC+  +  +
Sbjct: 491 MIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIE 550

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +++ V + L E+E  N   YV+ S I+A    W+D AK+R  + +  + K PGCS I +D
Sbjct: 551 LAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVD 610


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 329/592 (55%), Gaps = 60/592 (10%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFN---Y 70
           N PSL      SLL  C + ++++ IH QM+   +   N+ L R+++      +F+   Y
Sbjct: 2   NHPSL------SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPY 55

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I  PN   +N M RG   +    S ++KLY  M  LGL P+++T+PF+  SCA
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVS-AIKLYVCMISLGLLPNSYTFPFLLKSCA 114

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--------------------- 169
            L     G  +H  V K+G + D +V  SLI+MY + G+                     
Sbjct: 115 KLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTA 174

Query: 170 ----------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
                     ++SA+K+FDEI  +D+VSWN++ISGY+  G  KEA++LF  M +    PD
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPD 234

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           E T+V+V+ +C   G + LG+ V  ++  + +  N  + +ALID+Y KCG +  A  +F 
Sbjct: 235 ESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQ 294

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            + NKDV++WN MI  Y    L  EA++LF  M  +G NP+ +T++ +L ACA +GA+D 
Sbjct: 295 GLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDF 354

Query: 340 GKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           G+W+  Y  +R         LR  +      CG I+ A +VF  M      + NAMI   
Sbjct: 355 GRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGF 414

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A +GRA+ A  +F RM K G    P+D+TF+G+LSAC H+G++D GRR+F  M+ ++ + 
Sbjct: 415 AMHGRANAAFDIFSRMRKNG--IEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKIT 472

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           PK EHY CM+DL    G   EA + +  M  + D ++  +LL AC+   N ++ +   Q 
Sbjct: 473 PKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQK 532

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L++IE  N G+YV+ S I+A    W++ A +RAL+ +KG+ K PGCS I ID
Sbjct: 533 LIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEID 584


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 326/592 (55%), Gaps = 60/592 (10%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK-------DFNY 70
           N PSL      SLL  C + ++++ IH +M+   +   N+ L ++I+            Y
Sbjct: 2   NHPSL------SLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTY 55

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I  PN   +N M RG   +    S +L LY  M  LGL P+++T+PF+  +CA
Sbjct: 56  AISVFDSIQEPNLLIWNTMFRGHALSSDPVS-ALYLYVCMISLGLVPNSYTFPFLLKACA 114

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD------------ 178
              A   G  +H  V K+G D D +V  SLI MY + G+ + ARKVFD            
Sbjct: 115 KSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTA 174

Query: 179 -------------------EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
                              EI  +D+VSWN++ISGY++ G  KEA+ELF  M +    PD
Sbjct: 175 LIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPD 234

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           E T+V+VL +C     + LG+ V  ++  +    N  + +ALID+Y KCG +  A  +F+
Sbjct: 235 ESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFE 294

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            +  KDV++WN +I  Y    L  EA++LF  M  +G +P+++T++ +L ACA +GA+D+
Sbjct: 295 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDI 354

Query: 340 GKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           G+W+  Y  +R         LR  +      CG I+ A +VF+ M   +  SWNAMI   
Sbjct: 355 GRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A +GRA+ A  +F RM K+G    P+D+TF+G+LSAC H+G++D GR +F  M+  + + 
Sbjct: 415 AMHGRANPAFDIFSRMRKDG--IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKIT 472

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           PK EHY CM+DL   +G   EA + +  M    D ++  +LL AC+   N ++ +   Q 
Sbjct: 473 PKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQN 532

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L++IE  NSG+YV+ S I+A    W++ AK RAL+ +KG+ K PGCS I ID
Sbjct: 533 LIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEID 584



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 65/224 (29%)

Query: 17  LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFH 76
           +++PS LR  L+ +  KC   +  QQ+   ML   +   N ++        F +A    H
Sbjct: 369 VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI--------FGFA---MH 417

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
             + P   AF++  R                  M++ G++PD+ T+  +  +C+      
Sbjct: 418 GRANP---AFDIFSR------------------MRKDGIEPDDITFVGLLSACS------ 450

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
                HS +  +G     H+  S+   Y    KL+                +  MI    
Sbjct: 451 -----HSGMLDLG----RHIFRSMTEDYKITPKLE---------------HYGCMIDLLG 486

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
             G  KEA E+   M   E  PD +   S+L +C   G++ LG+
Sbjct: 487 HSGLFKEAEEMINSM---EMDPDGVIWCSLLKACKMHGNVELGE 527


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 320/545 (58%), Gaps = 19/545 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-----KDFNYASLLFHQISRPNEY 84
           LL  C S   + +IH  ++ N   +   L  ++I          +YA  +F Q+ + + +
Sbjct: 35  LLNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVF 94

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +IRG   A      +L LY  M   GL PDN+T+PFV  SCA L AL  G  VH +
Sbjct: 95  LWNTLIRGYADA-GPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCN 153

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + K G D D  V  SL+ MY++ G+      VF E+  R++VSW ++I+GY +  Y KE 
Sbjct: 154 IVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEG 213

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + +F  M      P+ +TLVSVL +C  L  L LGK + G+ +K  +D +  + +ALI +
Sbjct: 214 LGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIAL 273

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           YGKCG +  AR +FD MV +++V+WNAMI AY QN     A+ LF RM+   V+ D IT+
Sbjct: 274 YGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITM 333

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
           + V+SACAS+GAL+ G+W+ +   ++GL  ++            CG+ID A +VFE +P 
Sbjct: 334 VSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPC 393

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + VSW +MI A A +G   +AL LF RM  EG   +PN  TF  V +AC H+GLV+EGR
Sbjct: 394 RSVVSWTSMIGACASHGHGEDALKLFSRMKDEG--VKPNSFTFAAVFTACRHSGLVEEGR 451

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           + F+ M   + ++P  EH +CMVDL  RAG L EA++F+++MP + D  V GALLG+C+ 
Sbjct: 452 KHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRI 511

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             N ++++ V + L  ++      YV+ S I+A    W+D+A++R LM E+ + K PG S
Sbjct: 512 HSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHS 571

Query: 554 WIGID 558
            + ++
Sbjct: 572 LVEVN 576


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/611 (35%), Positives = 334/611 (54%), Gaps = 56/611 (9%)

Query: 1   MLLRAKAYSRHLAFTELNDP--SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL 58
           + + + +Y  H   +  + P  SL     LSLL  C + ++++ IH QM+   +   N+ 
Sbjct: 8   LTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYA 67

Query: 59  LIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           L ++++L           YA  +F  I  PN   +N M RG   +    S +LKLY  M 
Sbjct: 68  LSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVS-ALKLYVCMI 126

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
            LGL P+++T+PF+  SCA   A   G  +H  V K+G D D  V  SLI++Y + G+L+
Sbjct: 127 SLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLE 186

Query: 172 SARKVFD-------------------------------EIRERDLVSWNSMISGYSKMGY 200
            ARKVFD                               EI  +D+VSWN+MISGY++ G 
Sbjct: 187 DARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGN 246

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            KEA+ELF  M +    PDE T+V+V+ +C   G + LG+ V  ++  +    N  + ++
Sbjct: 247 YKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNS 306

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+D+Y KCG L  A  +F+ ++ KDV++WN +I  Y    L  EA++LF  M  +G  P+
Sbjct: 307 LMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPN 366

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQR--------GLRHDIF-----CGSIDDALKV 367
            +T++ +L ACA +GA+D+G+W+  Y  +R         LR  +      CG I+ A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQV 426

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  +   +  SWNAMI   A +GRA  A  +F RM K G    P+D+TF+G+LSAC  +G
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIG--IEPDDITFVGLLSACSRSG 484

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           ++D GR +F  M+  + + PK EHY CM+DL   +G   EA + +  M  + D ++  +L
Sbjct: 485 MLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSL 544

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+ + N ++ +   Q L++IE  N G YV+ S I+A    W++ AK+RAL+ +KG+ 
Sbjct: 545 LKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMK 604

Query: 548 KTPGCSWIGID 558
           K PGCS I ID
Sbjct: 605 KVPGCSSIEID 615


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/505 (40%), Positives = 297/505 (58%), Gaps = 17/505 (3%)

Query: 68  FNYASLLFHQISRPNEYA--FNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPF 124
            +YA  LF     P   A  +N++IR    A      +L L+ +M     + PD  T   
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHP-EDALHLFVEMLDDTAVSPDQHTVAN 176

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
              SC+ +  L+ G  V +  FK G   D  V +SLI MYA CG + +A  +F  ++ + 
Sbjct: 177 TVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKG 236

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +++WN+MI+GY K G  KE VE+F  M E     DE+TL+SV  +CG LGD  LG+W+  
Sbjct: 237 VIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAE 296

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           +  +  M  +  + +AL+DMY KCG L  ARR+FD M ++DVV W+AMI+ Y Q+    E
Sbjct: 297 YAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCRE 356

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ +FN M+   VNP+ +T++ VLSACA +GAL+ GKWV  Y  ++ L   +        
Sbjct: 357 ALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVD 416

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG I DA+K FE MPV N  +W A+I  +A NGR+ EAL LF  M +      P D
Sbjct: 417 FYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEAN--IEPTD 474

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           VTFIGVL AC H  LV+EGRR F  M+  +G+ P+ EHY CMVDL  RAG + EA+ F+ 
Sbjct: 475 VTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIR 534

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP + + +V  ALL AC   KN ++ +  ++ ++ ++  +SGNY++ S  +A++  W +
Sbjct: 535 NMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKN 594

Query: 534 SAKMRALMREKGVSKTPGCSWIGID 558
           +A +R  M+EKGV K PGCS I ++
Sbjct: 595 AAMVRKEMKEKGVEKIPGCSLIELE 619



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 179/334 (53%), Gaps = 18/334 (5%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           D   A +LFH +      A+N MI G      W++    ++++  M  +    D  T   
Sbjct: 221 DVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV---VEMFKGMLEVRAPFDEVTLLS 277

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           V  +C  L   N G  +     + G+    +++ +L+ MYA+CG+LD AR++FD +  RD
Sbjct: 278 VATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRD 337

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +V+W++MISGY++    +EA+ +F  M+  E  P+++T+VSVL +C  LG L  GKWV  
Sbjct: 338 VVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHS 397

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           ++ +  + L   +G+AL+D Y KCG +  A + F++M  ++  TW A+I   A NG S E
Sbjct: 398 YIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSRE 457

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH----- 354
           A+ LF+ M  A + P  +T IGVL AC+    ++ G+         Y     + H     
Sbjct: 458 ALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMV 517

Query: 355 DIF--CGSIDDALKVFEDMPV-TNEVSWNAMISA 385
           D+    G ID+A +   +MP+  N V W A++SA
Sbjct: 518 DLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/586 (35%), Positives = 327/586 (55%), Gaps = 52/586 (8%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFNYASLLF 75
           +L   LLSLL+ C S   ++QI  QM++  +    F   R+I        ++ +Y   + 
Sbjct: 51  VLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKIL 110

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLA 134
           + +  PN +++N +IRG   + +     L LY +M  R G +PDN+TY F+F  CANL+ 
Sbjct: 111 NNLQNPNVFSWNAVIRGCVES-ENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVL 169

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
              G  +   V K+G D+D ++ + +I M    G+   A KVFDE   RDLVSWNS+I+G
Sbjct: 170 SYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLING 229

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y +    +EA+ ++ +M  E   PDE+T++ V+ +C  L  L LG+ +  ++ ++ ++L 
Sbjct: 230 YVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLK 289

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG-------------- 300
             + +AL+DMY KCG L   + +FD M  K VV+W  MI  YA+NG              
Sbjct: 290 ISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPE 349

Query: 301 -----------------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
                            LS EA+ LF  M+++ + PDK+T++  LSAC+ +GALD G W 
Sbjct: 350 KNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWT 409

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             Y  +  L  D+            CG++  AL+VF +MP  N ++W A+I  LA  G  
Sbjct: 410 HNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNV 469

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
           ++A+  F +M   G    P+++TF+GVL+AC H GLV+EGR+ FD M S F L P+ +HY
Sbjct: 470 NDAIFYFSKMIDSG--LMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHY 527

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           SCMV+L  RAG L EA + ++ MP + D +V GAL  AC   +N  + +R    LL+++ 
Sbjct: 528 SCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDP 587

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            +SG YV+ + ++     W+++  +R +M E+GV KTPG S I ++
Sbjct: 588 HDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVN 633


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/499 (39%), Positives = 301/499 (60%), Gaps = 18/499 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           +F ++   +  A+N MI GL     W++ S   ++Y QM+R G+ P+  TY  +  +C N
Sbjct: 284 VFEKLVNRDLIAWNTMIGGLAEGGYWEEAS---EVYNQMQREGVMPNKITYVILLNACVN 340

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
             AL+ G  +HS V K G   D  V ++LI+MY+RCG +  AR VFD++  +D++SW +M
Sbjct: 341 SAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAM 400

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I G +K G+  EA+ ++  M++    P+ +T  S+L +C     L  G+ +   VV+  +
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGL 460

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             + ++G+ L++MY  CG++  AR+VFD M+ +D+V +NAMI  YA + L  EA+ LF+R
Sbjct: 461 ATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDR 520

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           ++  G+ PDK+T I +L+ACA+ G+L+  + +     + G   D             CGS
Sbjct: 521 LQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGS 580

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
             DA  VFE M   N +SWNA+I   A +GR  +AL LFERM  EG   +P+ VTF+ +L
Sbjct: 581 FSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEG--VKPDIVTFVSLL 638

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC HAGL++EGRR F  MS  F +IP  EHY CMVDL  RAG L EA   ++ MP + +
Sbjct: 639 SACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQAN 698

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             + GALLGAC+   N  V++R  +  L+++  N+  YV  S ++A   MWD +AK+R L
Sbjct: 699 TRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKL 758

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M ++GV+K PG SWI + D
Sbjct: 759 MEQRGVTKEPGRSWIQVGD 777



 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/505 (30%), Positives = 274/505 (54%), Gaps = 24/505 (4%)

Query: 24  REKLLSLLKKCPSTKTVQ---QIHTQM----LINFIQKPNFLLIRIIDLKDFNYASLLFH 76
           R  ++S L  C S   ++   +IH Q     L+  ++  N +L           A  +F 
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFD 185

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           ++ + +  ++ + I G     +  + + +++ +M++ G+ P+  TY  V  + ++  AL 
Sbjct: 186 KMEKKSVVSWTITIGGYADCGRSET-AFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G +VHS +   G + D  V  +L+ MYA+CG     R+VF+++  RDL++WN+MI G +
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + GY +EA E++ +M+ E  +P++IT V +L +C +   L  GK +   V K     +  
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +ALI MY +CG++  AR VFD MV KDV++W AMI   A++G   EA+ ++  M+ AG
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDAL 365
           V P+++T   +L+AC+S  AL+ G+ + +   + GL  D             CGS+ DA 
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDAR 484

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           +VF+ M   + V++NAMI   A +    EAL LF+R+ +EG   +P+ VT+I +L+AC +
Sbjct: 485 QVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG--LKPDKVTYINMLNACAN 542

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           +G ++  R +  L+    G    +   + +V  YA+ G  S+A    E+M ++ + I   
Sbjct: 543 SGSLEWAREIHTLVRKG-GFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKR-NVISWN 600

Query: 486 ALL-GACQKQKNTDVSQRVMQLLLE 509
           A++ G+ Q  +  D  Q   ++ +E
Sbjct: 601 AIIGGSAQHGRGQDALQLFERMKME 625



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 255/484 (52%), Gaps = 27/484 (5%)

Query: 28  LSLLKKCPSTKTV---QQIHTQMLINFIQKP-----NFLLIRIIDLKDFNYASLLFHQIS 79
           + +LK+C   K +   +Q+H Q +I     P     N L+   I       A  ++ ++S
Sbjct: 27  MKMLKRCIEVKDLVAGRQVH-QHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS 85

Query: 80  --RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
                 +++N M+ G    +     +LKL  QM++ GL PD  T      SC +  AL  
Sbjct: 86  YMERTVHSWNAMVVGYIQ-YGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEW 144

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H    + GL  D  V++ ++ MYA+CG ++ AR+VFD++ ++ +VSW   I GY+ 
Sbjct: 145 GREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYAD 204

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G ++ A E+F +M +E  +P+ IT +SVL +      L  GK V   ++    + +  +
Sbjct: 205 CGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAV 264

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+ MY KCG+    R+VF+ +VN+D++ WN MI   A+ G   EA  ++N+M+  GV
Sbjct: 265 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGV 324

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALK 366
            P+KIT + +L+AC +  AL  GK +    ++ G   DI            CGSI DA  
Sbjct: 325 MPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARL 384

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF+ M   + +SW AMI  LA +G   EAL +++ M + G    PN VT+  +L+AC   
Sbjct: 385 VFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG--VEPNRVTYTSILNACSSP 442

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
             ++ GRR+   +  + GL   +   + +V++Y+  G + +A    +RM ++ D +   A
Sbjct: 443 AALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQR-DIVAYNA 500

Query: 487 LLGA 490
           ++G 
Sbjct: 501 MIGG 504



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 206/397 (51%), Gaps = 17/397 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           +++ G + ++  Y  +   C  +  L  G  VH  + +     D +  ++LI MY +CG 
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73

Query: 170 LDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           ++ AR+V+ ++   ER + SWN+M+ GY + GY ++A++L  +M++    PD  T++S L
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            SC   G L  G+ +    ++  +  +  + + +++MY KCG++  AR VFD M  K VV
Sbjct: 134 SSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVV 193

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W   I  YA  G S  A  +F +M+  GV P++IT I VL+A +S  AL  GK V    
Sbjct: 194 SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI 253

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              G   D             CGS  D  +VFE +   + ++WN MI  LA  G   EA 
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            ++ +M +EG    PN +T++ +L+ACV++  +  G+ +   ++ + G        + ++
Sbjct: 314 EVYNQMQREG--VMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALI 370

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            +Y+R G + +A    ++M  K D I   A++G   K
Sbjct: 371 SMYSRCGSIKDARLVFDKMVRK-DVISWTAMIGGLAK 406



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 158/300 (52%), Gaps = 17/300 (5%)

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           AV++   ++++    +    + +L  C ++ DLV G+ V   +++++   + Y  +ALI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 264 MYGKCGALVPARRVFDAM--VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           MY +CG++  AR+V+  +  + + V +WNAM+  Y Q G   +A+ L  +M+  G+ PD+
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFED 370
            T++  LS+C S GAL+ G+ +   A Q GL  D+            CGSI++A +VF+ 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSW   I   A  GR+  A  +F++M +EG    PN +T+I VL+A      + 
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEG--VVPNRITYISVLNAFSSPAALK 244

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G+ +   + ++ G    +   + +V +YA+ G   +     E++  + D I    ++G 
Sbjct: 245 WGKAVHSRILNA-GHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR-DLIAWNTMIGG 302


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 325/587 (55%), Gaps = 51/587 (8%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASL 73
           PSL +   LSL+K C S   ++QIH+Q +   +     +  +II      +L D  YA +
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARM 74

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F  +  PN + +N MI+G +      S ++ +Y +M   G+ PD +TYPF+        
Sbjct: 75  VFDTMPGPNHFVWNNMIKGYSRVGCPNS-AVSMYCEMLERGVMPDEYTYPFLLKRFTRDT 133

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           A+  G  +H  + K+G   +  V ++LI +Y+  G++  AR VFD   + D+V+WN MIS
Sbjct: 134 AVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMIS 193

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++     E+++LF  M     LP  ITLVSVL +C  L DL +GK V  +V   K++ 
Sbjct: 194 GYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEP 253

Query: 254 NFYMGSALIDMYGKCG---------------------ALVP----------ARRVFDAMV 282
              + +ALIDMY  CG                     A+V           AR  FD M 
Sbjct: 254 VRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMP 313

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +D V+W AMI  Y Q     E + LF  M+ A + PD+ T++ +L+ACA +GAL+LG+W
Sbjct: 314 ERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEW 373

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  Y  +  ++ D F           CG+++ A+++F  MP  +++SW A+I  LA NG 
Sbjct: 374 IKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGY 433

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             EAL +F +M K   +  P++VT IGVL AC H+G+VD+G++ F  M++  G+ P   H
Sbjct: 434 GEEALDMFSQMLK--ASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAH 491

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y CMVDL  RAGHL EA + ++ MP K + IV G+LLGAC+  ++ ++++   Q +LE+E
Sbjct: 492 YGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELE 551

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             N   YV+   I+A    W+   ++R LM ++G+ KTPGCS I ++
Sbjct: 552 PENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMN 598


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/600 (34%), Positives = 331/600 (55%), Gaps = 53/600 (8%)

Query: 10  RHLAFTELNDPSL--LREKLLSLLKKCPSTKTVQQIHTQMLIN------FIQKPNFLLIR 61
           RH  F+  N P+    R + +SL+++C S + ++Q H  M+        +     F +  
Sbjct: 14  RHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAA 73

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           +       YA  +F +I +PN +A+N +IR   +              +      P+ +T
Sbjct: 74  LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +PF+  + A + +L+ G S+H    K  +  D  V++SLI  Y  CG LDSA KVF  I+
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           E+D+VSWNSMI+G+ + G   +A+ELF +M  E+     +T+V VL +C  + +L  G+ 
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
           V  ++ +N++++N  + +A++DMY KCG++  A+R+FDAM                    
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313

Query: 282 -----------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLS 329
                        KD+V WNA+I+AY QNG  NEA+++F+ ++    +  ++ITL+  LS
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           ACA +GAL+LG+W+  Y  + G+R +             CG ++ + +VF  +   +   
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W+AMI  LA +G  +EA+ +F +M +     +PN VTF  V  AC H GLVDE   LF  
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQE--ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQ 491

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M S++G++P+ +HY+C+VD+  R+G+L +A  F+E MP      V GALLGAC+   N +
Sbjct: 492 MESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLN 551

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +++     LLE+E  N G +V+ S I+A L  W++ +++R  MR  G+ K PGCS I ID
Sbjct: 552 LAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 329/588 (55%), Gaps = 54/588 (9%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
           +L   LLSLL+KC     ++QI  QM+IN +    F   R+I      + +  +Y+  + 
Sbjct: 51  VLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL 110

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL---KPDNFTYPFVFISCANL 132
             I  PN +++NV IRG + + +    S  LY QM R G    +PD+FTYP +F  CA+L
Sbjct: 111 KGIENPNIFSWNVTIRGFSES-ENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
              + G  +   V K+ L+   HV ++ I M+A CG +++ARKVFDE   RDLVSWN +I
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +GY K+G A++A+ ++  M  E   PD++T++ ++ SC  LGDL  GK    +V +N + 
Sbjct: 230 NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR 289

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL----------- 301
           +   + +AL+DM+ KCG +  ARR+FD +  + +V+W  MI+ YA+ GL           
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDM 349

Query: 302 --------------------SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
                                 +A+ LF  M+ +   PD+IT+I  LSAC+ +GALD+G 
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W+ +Y  +  L  ++            CG+I +AL VF  +   N +++ A+I  LA +G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHG 469

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            A  A+  F  M   G A  P+++TFIG+LSAC H G++  GR  F  M S F L P+ +
Sbjct: 470 DASTAISYFNEMIDAGIA--PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLK 527

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HYS MVDL  RAG L EA   +E MP + D  V GALL  C+   N ++ ++  + LLE+
Sbjct: 528 HYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLEL 587

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + S+SG YV+   ++    MW+D+ + R +M E+GV K PGCS I ++
Sbjct: 588 DPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 325/592 (54%), Gaps = 60/592 (10%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNY 70
           N PSL      SLL  C + ++++ IH QM+   +   N+ L ++I+            Y
Sbjct: 2   NHPSL------SLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPY 55

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I  PN   +N M RG   +    S +L LY  M  LGL P+ +T+PF+  SCA
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVS-ALYLYVCMISLGLLPNCYTFPFLLKSCA 114

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD------------ 178
              A   G  +H  V K+G D D +V  SLI+MY + G+L+ ARKVFD            
Sbjct: 115 KSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTA 174

Query: 179 -------------------EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
                              EI  +D+VSWN+MISGY++ G  KEA+ELF  M +    PD
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPD 234

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           E T+VSV+ +C     + LG+ V  ++  +    N  + +ALID+Y KCG +  A  +F+
Sbjct: 235 ESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 294

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            +  KDV++WN +I  Y    L  EA++LF  M  +G +P+ +T++ +L ACA +GA+++
Sbjct: 295 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEI 354

Query: 340 GKWVDKY-----------ASQRGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           G+W+  Y           +S R    D++  CG I+ A +VF+ +   +  SWNAMI   
Sbjct: 355 GRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGF 414

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A +GRA+ A  +F RM K      P+D+TF+G+LSAC H+G++D GR +F  M   + + 
Sbjct: 415 AMHGRANAAFDIFSRMRK--NEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKIT 472

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           PK EHY CM+DL   +G   EA + +  M  + D ++  +LL AC+   N ++ +   Q 
Sbjct: 473 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQN 532

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L++IE  N G+YV+ S I+A    W++ AK+RAL+ +KG+ K PGCS I ID
Sbjct: 533 LIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 584


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/603 (34%), Positives = 330/603 (54%), Gaps = 57/603 (9%)

Query: 10  RHLAFTELNDPSLLREK---LLSLLKKCPSTKTVQQIHTQML-INFIQKPN-----FLLI 60
           RH  F+  N P+   E+    +SL+ +C S + ++Q H  M+       P      F + 
Sbjct: 14  RHPNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIA 73

Query: 61  RIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPD 118
            +       YA  +F +I +PN + +N +IR   +       S+  +  M        P+
Sbjct: 74  ALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVC-SIWAFLDMVSSESQCYPN 132

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
            +T+PF+  + A + +L+ G S+H    K  +  D  V++SLI  Y  CG LDSA KVF 
Sbjct: 133 KYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 192

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            I+E+D+VSWNSMI+G+ + G   +A+ELF +M  E+     +T+V VL +C  + DL  
Sbjct: 193 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEF 252

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM----------------- 281
           G+ V  ++ +N++++N  + +A++DMY KCG++  A+R+FDAM                 
Sbjct: 253 GRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 312

Query: 282 --------------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIG 326
                           KD+V WNA+I+AY QNG  NEA+++F+ ++    +  ++ITL+ 
Sbjct: 313 SEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVS 372

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
            LSACA +GAL+LG+W+  Y  + G++ + +           CG ++ A +VF  +   +
Sbjct: 373 TLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRD 432

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
              W+AMI  LA +G   EA+ +F +M +     +PN VTF  V  AC H GLVDE   L
Sbjct: 433 VFVWSAMIGGLAMHGCGSEAVDMFYKMQE--ANVKPNGVTFTNVFCACSHTGLVDEAESL 490

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           F  M SS+G++P+ +HY+C+VD+  R+G+L +A  F+E MP      V GALLGAC+   
Sbjct: 491 FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 550

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           N  +++     LLE+E  N G +V+ S I+A    WD+ +++R  MR  G+ K PGCS I
Sbjct: 551 NLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610

Query: 556 GID 558
            ID
Sbjct: 611 EID 613


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 316/558 (56%), Gaps = 54/558 (9%)

Query: 52  IQKPNFLLIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSL 104
           +   N+ L +++D            YA  +F  I  PN+ ++N MIRG   +    S +L
Sbjct: 5   LHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPIS-AL 63

Query: 105 KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
            LY  M  LGL P+++T+PF+F SCA   A   G  +H+ + K GL  D HV  SLI+MY
Sbjct: 64  NLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMY 123

Query: 165 ARCG-------------------------------KLDSARKVFDEIRERDLVSWNSMIS 193
           A+ G                                +D A+K+FDEI  +D+VSWN+MIS
Sbjct: 124 AQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMIS 183

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+++G  KEA+ELF  M + +  PDE T+ +VL +C   G++ LG+ +  ++  +    
Sbjct: 184 GYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGS 243

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +ALID+Y KCG +  A  +F+ +  KDV++WN +I  YA      EA+++F  M 
Sbjct: 244 NLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEML 303

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--------GLRHDIF-----CGS 360
             G  P+ +T++ +L ACA +GA+D+G+W+  Y  ++         L+  +      CG+
Sbjct: 304 KLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGN 363

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I+ A +VF+ +   +  S NAMI   A +GRA  A  L  RM K+G    P+D+TF+G+L
Sbjct: 364 IEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDG--IEPDDITFVGLL 421

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC HAGL D GR++F  M+  + + PK EHY CM+DL  R+G   EA + +  M  + D
Sbjct: 422 SACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPD 481

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
            ++ G+LL AC+  KN ++ + + Q L++IE  N G+YV+ S I+A    WDD A++R L
Sbjct: 482 GVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTL 541

Query: 541 MREKGVSKTPGCSWIGID 558
           + +KG+ K PGCS I ID
Sbjct: 542 LNDKGLKKVPGCSSIEID 559


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 305/537 (56%), Gaps = 51/537 (9%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YA  +F  I  PN   +N M+RG  ++    S +L++Y +M  LG  P+++++PF+  SC
Sbjct: 16  YAISVFETIQEPNLLIWNTMLRGHASSSDPVS-ALEMYVRMVSLGHLPNSYSFPFLLKSC 74

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD------------------ 171
           A   A   G  +H+ V K+G   D +V  SLI+MYAR G L+                  
Sbjct: 75  AKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCT 134

Query: 172 -------------SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
                        SARKVFDEI ERD+VSWN+MI+GY + G  +EA+ELF  M      P
Sbjct: 135 ALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRP 194

Query: 219 DEITLVSVLGSCGDLGDLVLGK----WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           DE TLVSV+ +C   G + LG+    WV+     +    +  + +ALID+Y KCG +  A
Sbjct: 195 DEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETA 254

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
             +F+ +  KDVV+WN +I  Y    L  EA++LF  M  +G  P+ +TL+ VL ACA +
Sbjct: 255 FGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHL 314

Query: 335 GALDLGKWVDKY--------ASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNA 381
           GA+D+G+W+  Y         ++  LR  +      CG I+ A +VF  M   +  SWNA
Sbjct: 315 GAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNA 374

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI   A +GRA+ A  LF RM   G    P+D+TF+G+LSAC H+GL+D GR++F  M+ 
Sbjct: 375 MIFGFAMHGRANAAFDLFSRM--RGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ 432

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
            + L PK EHY CM+DL   +G   EA + +  MP + D ++  +LL AC+K  N ++++
Sbjct: 433 DYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAE 492

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              Q L++IE  NSG+YV+ S I+A    W+D A++R ++  KG+ K PGCS I +D
Sbjct: 493 SFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVD 549



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/426 (30%), Positives = 218/426 (51%), Gaps = 59/426 (13%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           DF  A  +F +I+  +  ++N MI G      +Y  +L+L+ +M R  ++PD  T   V 
Sbjct: 145 DFRSARKVFDEITERDVVSWNAMITGYVEN-GRYEEALELFKEMMRTNVRPDEGTLVSVV 203

Query: 127 ISCANLLALNHGVSVHSSVFKI----GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
            +CA   ++  G  VHS V       G      + ++LI +Y++CG +++A  +F+ +  
Sbjct: 204 SACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSC 263

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +D+VSWN++I GY+     KEA+ LF  M      P+++TL+SVL +C  LG + +G+W+
Sbjct: 264 KDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWI 323

Query: 243 EGFV------VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
             ++      V N+  L     ++LIDMY KCG +  A +VF++M+ + + +WNAMI  +
Sbjct: 324 HVYIDKKLKGVTNETSLR----TSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGF 379

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
           A +G +N A  LF+RM+   V PD IT +G+LSAC+  G LDLG+ + K  +Q       
Sbjct: 380 AMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ------- 432

Query: 357 FCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
                        D  +T ++  +  MI  L  +G   EA  +   M  E     P+ V 
Sbjct: 433 -------------DYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME-----PDGVI 474

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFG-----LIPK-SEHYSCMVDLYARAGHLSEAW 469
           +  +L AC   G ++        ++ SF      + P+ S  Y  + ++YA AG     W
Sbjct: 475 WCSLLKACKKHGNLE--------LAESFAQKLIKIEPENSGSYVLLSNIYATAGR----W 522

Query: 470 DFVERM 475
           + V R+
Sbjct: 523 EDVARV 528



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 168/353 (47%), Gaps = 49/353 (13%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  A  VF+ I+E +L+ WN+M+ G++       A+E++ RM     LP+  +   +L S
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA--------- 280
           C        G+ +   V+K    L+ Y+ ++LI MY + G L  AR+VFDA         
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 281 ----------------------MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                                 +  +DVV+WNAMIT Y +NG   EA+ LF  M    V 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-------------DIF--CGSIDD 363
           PD+ TL+ V+SACA  G+++LG+ V  +       H             D++  CG ++ 
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  +FE +   + VSWN +I          EALLLF+ M + G    PNDVT + VL AC
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC--PNDVTLLSVLPAC 311

Query: 424 VHAGLVDEGRRLFDLMSSSF-GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            H G +D GR +   +     G+  ++   + ++D+YA+ G +  A      M
Sbjct: 312 AHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM 364


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/496 (41%), Positives = 293/496 (59%), Gaps = 22/496 (4%)

Query: 80  RPN-EYAFNVMIRGLTTAWQK----YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           RP   + FN +I  LT A        + +L L       G +PD +T P    +CA L  
Sbjct: 73  RPRCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGG 132

Query: 135 -LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G   H+   K G      V ++L+T Y  CG+   ARKVFDE+ ERD+VSW +++S
Sbjct: 133 GLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLS 192

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            +++ G   EA+   G + E +  P+E+TL SVL +CG+LG    GK V G+  + + +L
Sbjct: 193 AFTRGGMFMEAL---GVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKEL 249

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  +G+AL+DMY KC  L  ARRVFD ++ +D+V+W  MI+   Q    +EA+ +FN M+
Sbjct: 250 NLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQ 309

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +GV PDK+ L  VLSACAS+GAL+ G+WV +Y  ++G+  D+            CG +D
Sbjct: 310 ISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLD 369

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A+ +F++MP+ N  SWNA+I+  A +GR  EAL  F+RM   G    PN+VTFI VL A
Sbjct: 370 TAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASG--LHPNEVTFITVLGA 427

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H+GLV EGR+LF+LM+ S+ L P  +HY CMVDL  RAG + EA+D ++ MP +    
Sbjct: 428 CCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVF 487

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
               LL ACQ     D SQ+++  + E+ESS +G YV+ S ++A    W D  K R  M 
Sbjct: 488 TWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMN 547

Query: 543 EKGVSKTPGCSWIGID 558
           EKG+ K PG S I ++
Sbjct: 548 EKGMQKEPGSSVIEVN 563


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 314/572 (54%), Gaps = 54/572 (9%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMI 90
           ++++ IH QM+   +   N+ L ++I+            YA  +F  I  PN   +N M 
Sbjct: 4   QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
           RG   +    S +LKLY  M  LGL P+++T+PF+  SCA   A   G  +H  V K+G 
Sbjct: 64  RGHALSSDPVS-ALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDE------------------------------- 179
           D D +V  SLI+MY + G+L+ A KVFDE                               
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           I  +D+VSWN+MISGY++ G  KEA+ELF  M +    PDE T+V+V+ +C   G + LG
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + V  ++  +    N  + +ALID+Y KCG L  A  +F+ +  KDV++WN +I  Y   
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--------G 351
            L  EA++LF  M  +G  P+ +T++ +L ACA +GA+D+G+W+  Y  +R         
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASS 362

Query: 352 LRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
           LR  +      CG I+ A +VF  +   +  SWNAMI   A +GRA  +  +F RM K G
Sbjct: 363 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNG 422

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
               P+D+TF+G+LSAC H+G++D GR +F  M+  + + PK EHY CM+DL   +G   
Sbjct: 423 --IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 480

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           EA + +  M  + D ++  +LL AC+   N ++ +   Q L++IE  N G+YV+ S I+A
Sbjct: 481 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYA 540

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
               W++ A  RAL+ +KG+ K PGCS I ID
Sbjct: 541 TAGRWNEVANTRALLNDKGMKKVPGCSSIEID 572


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/581 (36%), Positives = 326/581 (56%), Gaps = 52/581 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISR 80
           LLSLL+ C S   +++IH QM+   +    F L R++      + ++ +Y   + +  + 
Sbjct: 57  LLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAAN 116

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGV 139
            N +++N+ IRG   + +   +++ LY  M R G   PDN+TYP +F  CA         
Sbjct: 117 LNXFSWNMAIRGYVES-ENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTAN 175

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +   V ++G D D  V +++I +   CG+L +ARK+FDE   RDLVSWNS+I+GY + G
Sbjct: 176 EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCG 235

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A EA +L+ +M E   +PDE+T++ V+ +   L +L LG+ +   + +  ++L   + +
Sbjct: 236 LADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLAN 295

Query: 260 ALIDMYGKC-------------------------------GALVPARRVFDAMVNKDVVT 288
           AL+DMY KC                               G L  A R+F+ M  KDVV 
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVL 355

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+I  + Q   S EA+ LF+ M+ + V PDKIT++  LSAC+ +GALD+G W+  Y  
Sbjct: 356 WNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +  L  ++            CG+I  A++VFE+MP  N ++W A+I  LA +G+ H A+ 
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAIS 475

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            F  M   G    P+++TFIGVLSAC H GLVD+GR  F  M+S +G+ PK +HYSC+VD
Sbjct: 476 YFSEMISIGLV--PDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVD 533

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  RAG L EA + +  MP + D +V GAL    +   N  + +R    LLE++  + G 
Sbjct: 534 LLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGI 593

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           YV+ + ++ +  MW+ + K+R +M E+GV KTPGCS I ++
Sbjct: 594 YVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 305/535 (57%), Gaps = 47/535 (8%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F YA  +F  I  PN+  +N M+RG   +    S +LKLY  M  LGL P+++T+PF+  
Sbjct: 16  FPYAISVFATIQEPNQLIWNTMLRGYALSSDPVS-ALKLYVVMISLGLLPNSYTFPFLLK 74

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--------- 178
           SCA   A   G  +H  V K+G + D +V  SLI+MYA+ G+L+ A KVFD         
Sbjct: 75  SCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVS 134

Query: 179 ----------------------EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                                 EI  +D+VSWN+MISGY++ G  KEA+ELF  M +   
Sbjct: 135 YTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNV 194

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            PDE T+V+VL +C     + LG+ V  ++  +    N  + +ALID+Y KCG +  A  
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACG 254

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F+ +  KDVV+WN +I  Y    L  EA++LF  M  +G +P+ +T++ +L ACA +GA
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314

Query: 337 LDLGKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMI 383
           +D+G+W+  Y  ++         LR  +      CG I+ A +VF  M   +  SWNAMI
Sbjct: 315 IDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
              A +GRA+    LF RM K G    P+D+TF+G+LSAC H+G +D GR +F  M+  +
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNG--IEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDY 432

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
            + PK EHY CM+DL   +G   EA + ++ MP + D ++  +LL AC++  N ++++  
Sbjct: 433 DITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESF 492

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            + L+++E  N G+YV+ S I+A    WD+ AK+RAL+  KG+ K PGCS I ID
Sbjct: 493 ARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEID 547


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/581 (36%), Positives = 326/581 (56%), Gaps = 52/581 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISR 80
           LLSLL+ C S   +++IH QM+   +    F L R++      + ++ +Y   + +  + 
Sbjct: 57  LLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAAN 116

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGV 139
            N +++N+ IRG   + +   +++ LY  M R G   PDN+TYP +F  CA         
Sbjct: 117 LNVFSWNMAIRGYVES-ENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTAN 175

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +   V ++G D D  V +++I +   CG+L +ARK+FDE   RDLVSWNS+I+GY + G
Sbjct: 176 EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCG 235

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A EA +L+ +M E   +PDE+T++ V+ +   L +L LG+ +   + +  ++L   + +
Sbjct: 236 LADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLAN 295

Query: 260 ALIDMYGKC-------------------------------GALVPARRVFDAMVNKDVVT 288
           AL+DMY KC                               G L  A R+F+ M  KDVV 
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVL 355

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+I  + Q   S EA+ LF+ M+ + V PDKIT++  LSAC+ +GALD+G W+  Y  
Sbjct: 356 WNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +  L  ++            CG+I  A++VFE+MP  N ++W A+I  LA +G+ H A+ 
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAIS 475

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            F  M   G    P+++TFIGVLSAC H GLVD+GR  F  M+S +G+ PK +HYSC+VD
Sbjct: 476 YFSEMISIGLV--PDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVD 533

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  RAG L EA + +  MP + D +V GAL    +   N  + +R    LLE++  + G 
Sbjct: 534 LLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGI 593

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           YV+ + ++ +  MW+ + K+R +M E+GV KTPGCS I ++
Sbjct: 594 YVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/499 (39%), Positives = 301/499 (60%), Gaps = 18/499 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           +F ++   +  A+N MI GL     W++ S   ++Y+QM+R G+ P+  TY  +  +C N
Sbjct: 402 VFEKLVNRDLIAWNTMIGGLAEGGNWEEAS---EIYHQMQREGMMPNKITYVILLNACVN 458

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
             AL+ G  +HS V K G   D  V ++LI+MYARCG +  AR +F+++  +D++SW +M
Sbjct: 459 PTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAM 518

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I G +K G   EA+ +F  M++    P+ +T  S+L +C     L  G+ +   V++  +
Sbjct: 519 IGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGL 578

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             + ++ + L++MY  CG++  AR+VFD M  +D+V +NAMI  YA + L  EA+ LF+R
Sbjct: 579 ATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDR 638

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWV------DKYASQRGLRHDIF-----CGS 360
           ++  G+ PDK+T I +L+ACA+ G+L+  K +      D Y S   L + +      CGS
Sbjct: 639 LQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGS 698

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
             DAL VF+ M   N +SWNA+I   A +GR  + L LFERM  EG   +P+ VTF+ +L
Sbjct: 699 FSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEG--IKPDIVTFVSLL 756

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC HAGL++EGRR F  MS  FG+ P  EHY CMVDL  RAG L E    ++ MP + +
Sbjct: 757 SACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQAN 816

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             + GALLGAC+   N  V++R  +  L+++  N+  YV  S ++A   MWD +AK+R L
Sbjct: 817 TRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKL 876

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M ++GV+K PG SWI + D
Sbjct: 877 MEQRGVTKEPGRSWIEVGD 895



 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 154/511 (30%), Positives = 278/511 (54%), Gaps = 30/511 (5%)

Query: 21  SLLREKLLSLLKKCPSTKTVQ---QIHTQM----LINFIQKPNFLLIRIIDLKDFNYASL 73
           +L R   + LL  C S   ++   +IH +     L+  +   N +L         + A  
Sbjct: 241 ALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEARE 300

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHS---LKLYYQMKRLGLKPDNFTYPFVFISCA 130
           +F ++   +  ++ ++I G    +    HS    +++ +M++ G+ P+  TY  V  + +
Sbjct: 301 VFDKMETKSVVSWTIIIGG----YADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              AL  G +VHS +   G + D  V  +L+ MYA+CG     R+VF+++  RDL++WN+
Sbjct: 357 GPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNT 416

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI G ++ G  +EA E++ +M+ E  +P++IT V +L +C +   L  G+ +   VVK+ 
Sbjct: 417 MIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDG 476

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              +  + +ALI MY +CG++  AR +F+ MV KD+++W AMI   A++GL  EA+ +F 
Sbjct: 477 FMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQ 536

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCG 359
            M+ AG+ P+++T   +L+AC+S  ALD G+ + +   + GL  D             CG
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCG 596

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+ DA +VF+ M   + V++NAMI   A +    EAL LF+R+ +EG   +P+ VT+I +
Sbjct: 597 SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEG--LKPDKVTYINM 654

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC ++G ++  + +  L+    G +  +   + +V  YA+ G  S+A    ++M ++ 
Sbjct: 655 LNACANSGSLEWAKEIHSLVLKD-GYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKR- 712

Query: 480 DEIVLGALLGAC-QKQKNTDVSQRVMQLLLE 509
           + I   A++G C Q  +  DV Q   ++ +E
Sbjct: 713 NVISWNAIIGGCAQHGRGQDVLQLFERMKME 743



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 254/483 (52%), Gaps = 25/483 (5%)

Query: 28  LSLLKKCPSTKTV---QQIHTQMLINFI----QKPNFLLIRIIDLKDFNYASLLFHQISR 80
           + +LK+C   K +   +++H  ++ +         N L+   I       A  ++++++ 
Sbjct: 145 MKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNH 204

Query: 81  PNE--YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
                +++N M+ G    +     +LKL  +M++ GL     T   +  SC +  AL  G
Sbjct: 205 TERTVHSWNAMVVGYVQ-YGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H    K  L  D +V++ ++ MYA+CG +  AR+VFD++  + +VSW  +I GY+  
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G+++ A E+F +M++E  +P+ IT ++VL +      L  GK V   ++    + +  +G
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+ MY KCG+    R+VF+ +VN+D++ WN MI   A+ G   EA  ++++M+  G+ 
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P+KIT + +L+AC +  AL  G+ +     + G   DI            CGSI DA  +
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  M   + +SW AMI  LA +G   EAL +F+ M + G   +PN VT+  +L+AC    
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG--LKPNRVTYTSILNACSSPA 561

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            +D GRR+   +  + GL   +   + +V++Y+  G + +A    +RM ++ D +   A+
Sbjct: 562 ALDWGRRIHQQVIEA-GLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR-DIVAYNAM 619

Query: 488 LGA 490
           +G 
Sbjct: 620 IGG 622



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 209/383 (54%), Gaps = 19/383 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A LLF+++ R +  ++  MI GL  +    + +L ++  M++ GLKP+  TY  +  +C+
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLG-AEALAVFQDMQQAGLKPNRVTYTSILNACS 558

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +  AL+ G  +H  V + GL  D HV+++L+ MY+ CG +  AR+VFD + +RD+V++N+
Sbjct: 559 SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNA 618

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY+     KEA++LF R++EE   PD++T +++L +C + G L   K +   V+K+ 
Sbjct: 619 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              +  +G+AL+  Y KCG+   A  VFD M+ ++V++WNA+I   AQ+G   + + LF 
Sbjct: 679 YLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFE 738

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIF--C 358
           RMK  G+ PD +T + +LSAC+  G L+ G+           +       G   D+    
Sbjct: 739 RMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRA 798

Query: 359 GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTF 416
           G +D+   + + MP   N   W A++ A     R H  + + ER ++      P N   +
Sbjct: 799 GQLDEVEALIKTMPFQANTRIWGALLGAC----RIHGNVPVAERAAESSLKLDPDNAAVY 854

Query: 417 IGVLSACVHAGLVDEGRRLFDLM 439
           + +      AG+ D   +L  LM
Sbjct: 855 VALSHMYAAAGMWDSAAKLRKLM 877



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 202/397 (50%), Gaps = 17/397 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           +++ G + ++  Y  +   C  +  L  G  VH  + +     D +  ++LI MY +CG 
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGS 191

Query: 170 LDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           ++ AR+V++++   ER + SWN+M+ GY + GY +EA++L   M++        T + +L
Sbjct: 192 IEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLL 251

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            SC     L  G+ +    +K ++  +  + + +++MY KCG++  AR VFD M  K VV
Sbjct: 252 SSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVV 311

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W  +I  YA  G S  A  +F +M+  GV P++IT I VL+A +   AL  GK V  + 
Sbjct: 312 SWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHI 371

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              G   D+            CGS  D  +VFE +   + ++WN MI  LA  G   EA 
Sbjct: 372 LNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEAS 431

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            ++ +M +EG    PN +T++ +L+ACV+   +  GR +   +    G +      + ++
Sbjct: 432 EIYHQMQREG--MMPNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALI 488

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            +YAR G + +A     +M  K D I   A++G   K
Sbjct: 489 SMYARCGSIKDARLLFNKMVRK-DIISWTAMIGGLAK 524


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 313/536 (58%), Gaps = 24/536 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISRPNEYAFNVMIRGL 93
           ++QIH QML   +    F   +I+      +     YA L+F QI  P  Y  N +IRG 
Sbjct: 4   LKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGC 63

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
           T     +  +L  Y +M   GL PD +T+P +F SC N    + G  +H    K+G   D
Sbjct: 64  TDK-NLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFASD 119

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-R 212
            +  ++L+ MY+ CG L SARKVFD++ ++ +VSW +MI  +++     EAV LF RM +
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMK 179

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
            E   P+E+TLV+VL +C    DL + K +  ++ ++    +  + + L+D+Y KCG + 
Sbjct: 180 SENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQ 239

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            AR +FD    K++ +WN MI  + ++    EA++LF  M+  G+  DK+T+  +L AC 
Sbjct: 240 LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACT 299

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +GAL+LGKW+  Y  ++ +  D+            CGSI+ A++VF +MP  + ++W A
Sbjct: 300 HLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTA 359

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           +I  LA  G+A  AL  F+ M  +G   +P+ +TF+GVL+AC HAG VDEG   F+ MS 
Sbjct: 360 LILGLAMCGQAENALQYFDEMHIKG--VKPDAITFVGVLAACSHAGFVDEGISHFNSMSD 417

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
           ++G+ P  EHY  +VD+  RAG ++EA + ++ MP   D+ VLG LLGAC+   N + ++
Sbjct: 418 TYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAE 477

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           R  + LLEI+  +SG YV+ S I+ + K W+++ + R LM E+G+ K PGCS I +
Sbjct: 478 RAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEV 533



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 202/399 (50%), Gaps = 21/399 (5%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQIS 79
           R    SL K C ++   +QIH     + F       N L+    +      A  +F ++ 
Sbjct: 88  RYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKME 147

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHG 138
                ++  MI G+   W + + +++L+ +M K   +KP+  T   V  +CA    L   
Sbjct: 148 DKTVVSWATMI-GVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMV 206

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H  + + G      ++  L+ +Y +CG +  AR +FD+ +E++L SWN MI+G+ + 
Sbjct: 207 KRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              +EA+ LF  M+ +    D++T+ S+L +C  LG L LGKW+  ++ K ++D++  +G
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALG 326

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+DMY KCG++  A +VF  M  KDV+TW A+I   A  G +  A+  F+ M   GV 
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVK 386

Query: 319 PDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALK 366
           PD IT +GVL+AC+  G +D G        D Y  Q  + H     DI    G I +A +
Sbjct: 387 PDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEE 446

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           + + MP+  +     ++  L    R H  L   ER +K+
Sbjct: 447 LIKSMPMAPD---QFVLGGLLGACRIHGNLEAAERAAKQ 482


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 335/611 (54%), Gaps = 56/611 (9%)

Query: 1   MLLRAKAYSRHLAFTELNDP--SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL 58
           + + + +Y  H   +  + P  S+     LSLL  C + ++++ IH QM+   +   N+ 
Sbjct: 8   LTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYA 67

Query: 59  LIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           L ++I+        +   YA  +F  I  PN   +N M RG   +    S +LKLY  M 
Sbjct: 68  LSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVS-ALKLYVCMI 126

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
            LGL P+++T+PFV  SCA   A   G  +H  V K+G D D +V  SLI+MY + G+L+
Sbjct: 127 SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLE 186

Query: 172 SARKVFD-------------------------------EIRERDLVSWNSMISGYSKMGY 200
            A KVFD                               EI  +D+VSWN+MISGY++ G 
Sbjct: 187 DAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGN 246

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            KEA+ELF  M +    PDE T+V+V+ +C   G + LG+ V  ++  +    N  + +A
Sbjct: 247 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNA 306

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LID+Y KCG L  A  +F+ +  KDV++WN +I  Y    L  EA++LF  M  +G  P+
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQR--------GLRHDIF-----CGSIDDALKV 367
            +T++ +L ACA +GA+D+G+W+  Y  +R         LR  +      CG I+ A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  +   +  SWNAMI   A +GRA  +  LF RM K G   +P+D+TF+G+LSAC H+G
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG--IQPDDITFVGLLSACSHSG 484

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           ++D GR +F  M+  + + PK EHY CM+DL   +G   EA + +  M  + D ++  +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+   N ++ +   + L++IE  N G+YV+ S I+A+   W++ AK RAL+ +KG+ 
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604

Query: 548 KTPGCSWIGID 558
           K PGCS I ID
Sbjct: 605 KVPGCSSIEID 615


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/555 (35%), Positives = 319/555 (57%), Gaps = 21/555 (3%)

Query: 27  LLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
            LS++K C S   +Q   ++H  ++    +    +   +  +         A  +F ++ 
Sbjct: 123 FLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP 182

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           + +  ++N +I G +   Q Y  +L L+ +M+  G+KP++ T   V   CA+LLAL  G 
Sbjct: 183 KRDVVSWNAIIAGYSQNGQPYE-ALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGK 241

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H    + G++ D  V + L+ MYA+CG +++A K+F+ +  RD+ SWN++I GYS   
Sbjct: 242 QIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNS 301

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EA+  F RM+     P+ IT+VSVL +C  L  L  G+ + G+ +++  + N  +G+
Sbjct: 302 QHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN 361

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL++MY KCG +  A ++F+ M  K+VV WNA+I+ Y+Q+G  +EA+ LF  M+  G+ P
Sbjct: 362 ALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKP 421

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D   ++ VL ACA   AL+ GK +  Y  + G   ++            CG+++ A K+F
Sbjct: 422 DSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLF 481

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E MP  + VSW  MI A   +G   +AL LF +M + G   + + + F  +L+AC HAGL
Sbjct: 482 ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETG--TKLDHIAFTAILTACSHAGL 539

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VD+G + F  M S +GL PK EHY+C+VDL  RAGHL EA   ++ M  + D  V GALL
Sbjct: 540 VDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+   N ++ ++  + L E++  N+G YV+ S I+A  + W+D AK+R +M+EKGV K
Sbjct: 600 GACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKK 659

Query: 549 TPGCSWIGIDDPKQS 563
            PGCS + +    Q+
Sbjct: 660 QPGCSVVAVHRDVQT 674



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 228/393 (58%), Gaps = 17/393 (4%)

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
           W K   +L+LYYQM+R G+ PD   +  V  +C +   L  G  VH  +   G + D  V
Sbjct: 101 WNK---ALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIV 157

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             +L +MY +CG L++AR+VFD + +RD+VSWN++I+GYS+ G   EA+ LF  M+    
Sbjct: 158 GTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI 217

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            P+  TLVSV+  C  L  L  GK +  + +++ ++ +  + + L++MY KCG +  A +
Sbjct: 218 KPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHK 277

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F+ M  +DV +WNA+I  Y+ N   +EA+  FNRM+  G+ P+ IT++ VL ACA + A
Sbjct: 278 LFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337

Query: 337 LDLGKWVDKYASQRGLR-HDIF----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L+ G+ +  YA + G   +D+           CG+++ A K+FE MP  N V+WNA+IS 
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            + +G  HEAL LF  M  +G   +P+    + VL AC H   +++G+++      S G 
Sbjct: 398 YSQHGHPHEALALFIEMQAQG--IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS-GF 454

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                  + +VD+YA+ G+++ A    ERMPE+
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ 487



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 194/362 (53%), Gaps = 26/362 (7%)

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV--------FDEIRERD-LVS 187
           H +S H   +  G      +  S +    R  K+ + R+V        F +   R+  V 
Sbjct: 31  HSISYHVCFYFYGPSP---LPTSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVV 87

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W   I GY K G+  +A+ L+ +M+     PD++  +SV+ +CG   DL  G+ V   ++
Sbjct: 88  WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
               + +  +G+AL  MY KCG+L  AR+VFD M  +DVV+WNA+I  Y+QNG   EA+ 
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALA 207

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF+ M+  G+ P+  TL+ V+  CA + AL+ GK +  YA + G+  D+           
Sbjct: 208 LFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYA 267

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG+++ A K+FE MP+ +  SWNA+I   + N + HEAL  F RM   G   +PN +T 
Sbjct: 268 KCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG--IKPNSITM 325

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + VL AC H   +++G+++      S G        + +V++YA+ G+++ A+   ERMP
Sbjct: 326 VSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384

Query: 477 EK 478
           +K
Sbjct: 385 KK 386


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 327/603 (54%), Gaps = 59/603 (9%)

Query: 12  LAFTELNDPS---LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL--- 65
           L F   +DP    L +   L+LL+KC +  T +QIH+ ++   +    F+  ++I     
Sbjct: 13  LHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAV 72

Query: 66  ---KDFNYASLLF---HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
               D +YA  LF    Q  + N + +N +IRG + +      SL L+ +M   G++P++
Sbjct: 73  SPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLS-SSPLSSLHLFSRMLYYGVQPNS 131

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK---------- 169
            T+PF+F SC    A + G  +H+   K+ L  + HV  S+I MYA  G+          
Sbjct: 132 HTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDK 191

Query: 170 ---------------------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
                                LD AR++FDEI  +D+VSWN+MISGY + G  +EA+  F
Sbjct: 192 SSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCF 251

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             M+E   LP++ T+V VL +CG      LGKW+  +V  N    N  + +ALIDMY KC
Sbjct: 252 YEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKC 311

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G    AR +FD +  KDV++WN MI  Y+   L  EA+ LF  M  + V P+ +T +G+L
Sbjct: 312 GETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGIL 371

Query: 329 SACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFEDMPVTN 375
            ACA +GALDLGKWV  Y   + LR+           D++  CG I+ A +VF  M   N
Sbjct: 372 HACACLGALDLGKWVHAYI-DKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRN 430

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
             SWNAM+S  A +G A  AL LF  M  + G  RP+D+TF+GVLSAC  AGLVD G + 
Sbjct: 431 LASWNAMLSGFAMHGHAERALALFSEMVNK-GLFRPDDITFVGVLSACTQAGLVDLGHQY 489

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           F  M   +G+ PK +HY CM+DL ARA    EA   ++ M  + D  + G+LL AC+   
Sbjct: 490 FRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHG 549

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             +  + V + L ++E  N+G +V+ S I+A    WDD A++R  + +KG+ K PGC+ I
Sbjct: 550 RVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSI 609

Query: 556 GID 558
            ID
Sbjct: 610 EID 612


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/546 (35%), Positives = 325/546 (59%), Gaps = 21/546 (3%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK----DFNYASLLFHQISRPNEY 84
           SL+        ++QIH ++L+  +Q   FL+ ++I       D  +A  +F  + RP  +
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVF 85

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +IRG +     +  +L +Y +M+   + PD+FT+P +  +C  L  L  G  VH+ 
Sbjct: 86  PWNAIIRGYSRN-NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQ 144

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGYSKMGYAK 202
           VF++G + D  V + LI +YA+C +L  AR VF+   + ER +VSW +++S Y++ G   
Sbjct: 145 VFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPV 204

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+E+F +MR+ +  PD + LVSVL +   L DL  G+ +   V+K  ++    +  +L 
Sbjct: 205 EALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLN 264

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG +  A+ +FD M + +++ WNAMI+ YA+NG + +AI LF+ M    V PD I
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTI 324

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           ++   +SACA +G+L+  +W+D+Y S+   R D+F           CGS++ A  VF+  
Sbjct: 325 SITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRT 384

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + V W+AMI     +G+A EA+ L+  M ++G    PNDVTF+G+L AC H+G+V E
Sbjct: 385 LDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDG--VHPNDVTFLGLLIACNHSGMVRE 442

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G   F+ M+    + P+ +HY+C++DL  RAGHL +A++ ++ MP +    V GALL AC
Sbjct: 443 GWWFFNRMADH-KINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +K ++ ++ +   Q L  I+ SN+G+YV  S ++A  ++WD  A++R  M+EKG++K  G
Sbjct: 502 KKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561

Query: 552 CSWIGI 557
           CSW+ +
Sbjct: 562 CSWVEV 567


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 335/587 (57%), Gaps = 56/587 (9%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKP----NFLLIRIID--LKDFNYASLLFHQ 77
           ++  + LLK C S + ++QI TQ+L     +     N  ++   D  + + +YA  +F+ 
Sbjct: 32  KKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNY 91

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  P  + +N++I+  T     +  ++ L+ Q++  GL PDNFTYPFVF +   L  +  
Sbjct: 92  IDIPGLFIYNLVIKAFTKNGS-FRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVRE 150

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  V+  V K GL+ D +V +SL+ MYA  G++ + R+VF+E+ +RD+VSWN +ISGY K
Sbjct: 151 GEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVK 210

Query: 198 MGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
               ++AV++F RM+++  L P+E T+VS L +C  L  L LGK +  +V + ++     
Sbjct: 211 CRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYV-REQLGFTIK 269

Query: 257 MGSALIDMYGKCGALVPARRVFDAM---------------VN----------------KD 285
           +G+AL+DMY KCG L  AR +F+ M               VN                +D
Sbjct: 270 IGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRD 329

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           VV W AMI  Y Q    ++A+ LF  M+   V+PD+ TL+ +L+ CA +G L+ GKW+  
Sbjct: 330 VVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHG 389

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
           Y  +  +  D             CG I+ +L++F  +   +  SW ++I  LA NG+  +
Sbjct: 390 YIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSK 449

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           AL LF  M + G   +P+D+TFIGVLSAC H GLV+EGR+ F  M++ + + PK EHY C
Sbjct: 450 ALELFAEMVQTG--VKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGC 507

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVL---GALLGACQKQKNTDVSQRVMQLLLEIE 511
           ++DL  RAG L EA + +E+ P   +E+++   GALL AC+   N ++ +RV + L+ IE
Sbjct: 508 LIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIE 567

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S +S  + + + I+A+   W+D  K+R  M++ GV K PGCS + ++
Sbjct: 568 SGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 614



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 205/431 (47%), Gaps = 53/431 (12%)

Query: 95  TAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
           T +Q +  +  L++  K L L    +FT         N  ++ H   + + + + G    
Sbjct: 5   TKFQLFKFT-SLHFLSKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGF--- 60

Query: 154 DHVSHSLITMYARC------GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
            H S   +  +  C      G L  A ++F+ I    L  +N +I  ++K G  ++AV L
Sbjct: 61  -HQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLL 119

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           F ++REE   PD  T   V  + G LG++  G+ V GFVVK+ ++ + Y+ ++L+DMY +
Sbjct: 120 FRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAE 179

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIG 326
            G +   R+VF+ M  +DVV+WN +I+ Y +     +A+ +F RM + + + P++ T++ 
Sbjct: 180 VGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVS 239

Query: 327 VLSACASIGALDLGKWVDKYA-SQRGLRHDIF---------CGSIDDALKVFEDMPVTNE 376
            LSAC ++  L+LGK + +Y   Q G    I          CG +  A ++F DMP+   
Sbjct: 240 TLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTV 299

Query: 377 VSWNAMISALAFNGRAHEALLLFER---------------------------MSKEGGAA 409
           + W +M+S     G+  EA  LFER                           + +E    
Sbjct: 300 ICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIK 359

Query: 410 R--PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           R  P+  T + +L+ C   G +++G+ +   +  +  +I      + ++++YA+ G + +
Sbjct: 360 RVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVG-TALIEMYAKCGFIEK 418

Query: 468 AWDFVERMPEK 478
           + +    + EK
Sbjct: 419 SLEIFNGLKEK 429


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 331/593 (55%), Gaps = 56/593 (9%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
           L++   +SLLK C S   ++QI   +    +Q+    L +++       L DFNYA+ +F
Sbjct: 6   LMKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIF 65

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           + I  P+ + +N+MI+    +   +  ++ L+ Q++  G+ PDN+TYP+V      +  +
Sbjct: 66  NYIHDPSLFIYNLMIKAFVKS-GSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEV 124

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  VH+ V K GL+ D +V +S + MYA  G ++   +VF+E+ +RD VSWN MISGY
Sbjct: 125 REGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGY 184

Query: 196 SKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            +    +EAV+++ RM  E    P+E T+VS L +C  L +L LGK +  ++  +++DL 
Sbjct: 185 VRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIA-SELDLT 243

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMV-------------------------------N 283
             MG+AL+DMY KCG +  AR +FDAM                                +
Sbjct: 244 TIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPS 303

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +D+V W AMI  Y Q     E I LF  M+  GV PDK  ++ +L+ CA  GAL+ GKW+
Sbjct: 304 RDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWI 363

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             Y  +  ++ D             CG I+ + ++F  +   +  SW ++I  LA NG+ 
Sbjct: 364 HNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKP 423

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EAL LF+ M   G   +P+D+TF+ VLSAC HAGLV+EGR+LF  MSS + + P  EHY
Sbjct: 424 SEALELFKAMQTCG--LKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHY 481

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVL---GALLGACQKQKNTDVSQRVMQLLLE 509
            C +DL  RAG L EA + V+++P + +EI++   GALL AC+   N D+ +R+   L +
Sbjct: 482 GCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAK 541

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
           ++SS+S  + + + I+A+   W+D  K+R  M++ G+ K PG S I +D   Q
Sbjct: 542 VKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQ 594



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 147/329 (44%), Gaps = 35/329 (10%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
           +EL+  +++   LL +  KC      ++I   M +  +     ++   +     + A  L
Sbjct: 238 SELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNL 297

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F +    +   +  MI G    + ++  ++ L+ +M+  G+KPD F    +   CA   A
Sbjct: 298 FERSPSRDIVLWTAMINGYVQ-FNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGA 356

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G  +H+ + +  +  D  V  +LI MYA+CG ++ + ++F+ ++E+D  SW S+I G
Sbjct: 357 LEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICG 416

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDL 253
            +  G   EA+ELF  M+     PD+IT V+VL +C   G +  G K          ++ 
Sbjct: 417 LAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEP 476

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N       ID+ G+ G L  A  +   +               AQN   NE I       
Sbjct: 477 NLEHYGCFIDLLGRAGLLQEAEELVKKLP--------------AQN---NEII------- 512

Query: 314 YAGVNPDKITLIG-VLSACASIGALDLGK 341
                   + L G +LSAC + G +D+G+
Sbjct: 513 --------VPLYGALLSACRTYGNIDMGE 533


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 323/546 (59%), Gaps = 21/546 (3%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEY 84
           SL+        ++QIH ++L+  +Q   FL+ ++I       D  +A  +F  + RP  +
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +IRG +     +  +L +Y  M+   + PD+FT+P +  +C+ L  L  G  VH+ 
Sbjct: 86  PWNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGYSKMGYAK 202
           VF++G D D  V + LI +YA+C +L SAR VF+   + ER +VSW +++S Y++ G   
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+E+F  MR+ +  PD + LVSVL +   L DL  G+ +   VVK  +++   +  +L 
Sbjct: 205 EALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG +  A+ +FD M + +++ WNAMI+ YA+NG + EAI +F+ M    V PD I
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           ++   +SACA +G+L+  + + +Y  +   R D+F           CGS++ A  VF+  
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + V W+AMI     +GRA EA+ L+  M  E G   PNDVTF+G+L AC H+G+V E
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAM--ERGGVHPNDVTFLGLLMACNHSGMVRE 442

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G   F+LM+    + P+ +HY+C++DL  RAGHL +A++ ++ MP +    V GALL AC
Sbjct: 443 GWWFFNLMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +K ++ ++ +   Q L  I+ SN+G+YV  S ++A  ++WD  A++R  M+EKG++K  G
Sbjct: 502 KKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561

Query: 552 CSWIGI 557
           CSW+ +
Sbjct: 562 CSWVEV 567


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/467 (40%), Positives = 293/467 (62%), Gaps = 14/467 (2%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+L+ +MK  G KPD+ T   V  SCA LL L  G  +H  + + G   D  VS +L+ 
Sbjct: 383 ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVD 442

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG L+ A++VF++I+ +++VSWNSMI+GYS  G +K  +ELF RM EE   P   T
Sbjct: 443 MYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 502

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L S+L +C    +L LGK++ G++++N+++ + ++ S+LID+Y KCG +  A  VF  M 
Sbjct: 503 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
             +VV+WN MI+ Y + G   EA+++F  M+ AGV PD IT   VL AC+ +  L+ GK 
Sbjct: 563 KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE 622

Query: 343 VDKYASQRGLR---------HDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  +  +  L           D++  CG++D+AL +F  +P  + VSW +MI+A   +G+
Sbjct: 623 IHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQ 682

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A EAL LFE+M +    A+P+ VTF+ +LSAC HAGLVDEG   F+ M + +G  P  EH
Sbjct: 683 AFEALKLFEKMQQSD--AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH 740

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEI 510
           YSC++DL  R G L EA++ ++R P+  +++ +L  L  AC   K  D+ +++ +LL+E 
Sbjct: 741 YSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEK 800

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +  +   Y+I S ++A++K WD+  K+R  ++E G+ K PGCSWI +
Sbjct: 801 DPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 847



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/426 (36%), Positives = 234/426 (54%), Gaps = 21/426 (4%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQK---YSHSLKLYYQMKRLG-LKPDNFTYP 123
           F  A L+F  I  P +     +  GL  A  K   +   L++++++     LKPD FTYP
Sbjct: 246 FQSAKLVFQTIENPLDIT---LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYP 302

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            V  +C+ L  + +G  VH+ V K G   D  V  S + MYA+C   + A K+FDE+ ER
Sbjct: 303 SVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPER 362

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D+ SWN++IS Y + G  ++A+ELF  M+   F PD +TL +V+ SC  L DL  GK + 
Sbjct: 363 DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH 422

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
             +V++   L+ ++ SAL+DMYGKCG L  A+ VF+ +  K+VV+WN+MI  Y+  G S 
Sbjct: 423 MELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSK 482

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
             I LF RM   G+ P   TL  +L AC+    L LGK++  Y  +  +  DIF      
Sbjct: 483 SCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLI 542

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG+I  A  VF++MP TN VSWN MIS     G   EAL++F  M K G   +P+
Sbjct: 543 DLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VKPD 600

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            +TF  VL AC    ++++G+ + + +  S  L         ++D+YA+ G + EA    
Sbjct: 601 AITFTSVLPACSQLAVLEKGKEIHNFIIES-KLEINEVVMGALLDMYAKCGAVDEALHIF 659

Query: 473 ERMPEK 478
            ++PE+
Sbjct: 660 NQLPER 665



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 176/363 (48%), Gaps = 36/363 (9%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYS 196
           G  +H  +  +GL  +  +  SLI +Y  C    SA+ VF  I    D+  WN +++  +
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 197 KMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           K     E +E+F R+    +L PD  T  SVL +C  LG +  GK V   V+K+   ++ 
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            + S+ + MY KC     A ++FD M  +DV +WN +I+ Y Q+G   +A+ LF  MK +
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 393

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           G  PD +TL  V+S+CA +  L+ GK +     + G   D F           CG ++ A
Sbjct: 394 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMA 453

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            +VFE +   N VSWN+MI+  +  G +   + LF RM +EG   RP   T   +L AC 
Sbjct: 454 KEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEG--IRPTLTTLSSILMACS 511

Query: 425 HA----------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
            +          G +   R   D+  +           S ++DLY + G++  A +  + 
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVN-----------SSLIDLYFKCGNIGSAENVFQN 560

Query: 475 MPE 477
           MP+
Sbjct: 561 MPK 563



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 147/281 (52%), Gaps = 15/281 (5%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L S+L  C  +  +Q    IH  ++ N ++   F+   +IDL     +   A  +F  + 
Sbjct: 503 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           + N  ++NVMI G       Y  +L ++  M++ G+KPD  T+  V  +C+ L  L  G 
Sbjct: 563 KTNVVSWNVMISGYVKVGS-YLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGK 621

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H+ + +  L+ ++ V  +L+ MYA+CG +D A  +F+++ ERD VSW SMI+ Y   G
Sbjct: 622 EIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHG 681

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN---KMDLNFY 256
            A EA++LF +M++ +  PD++T +++L +C   G +  G +    ++     K  +  Y
Sbjct: 682 QAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHY 741

Query: 257 MGSALIDMYGKCGALVPARRVFDAM--VNKDVVTWNAMITA 295
             S LID+ G+ G L  A  +      + +DV   + + +A
Sbjct: 742 --SCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSA 780


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/467 (40%), Positives = 293/467 (62%), Gaps = 14/467 (2%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+L+ +MK  G KPD+ T   V  SCA LL L  G  +H  + + G   D  VS +L+ 
Sbjct: 191 ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVD 250

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG L+ A++VF++I+ +++VSWNSMI+GYS  G +K  +ELF RM EE   P   T
Sbjct: 251 MYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 310

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L S+L +C    +L LGK++ G++++N+++ + ++ S+LID+Y KCG +  A  VF  M 
Sbjct: 311 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
             +VV+WN MI+ Y + G   EA+++F  M+ AGV PD IT   VL AC+ +  L+ GK 
Sbjct: 371 KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE 430

Query: 343 VDKYASQRGLR---------HDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  +  +  L           D++  CG++D+AL +F  +P  + VSW +MI+A   +G+
Sbjct: 431 IHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQ 490

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A EAL LFE+M +    A+P+ VTF+ +LSAC HAGLVDEG   F+ M + +G  P  EH
Sbjct: 491 AFEALKLFEKMQQSD--AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH 548

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEI 510
           YSC++DL  R G L EA++ ++R P+  +++ +L  L  AC   K  D+ +++ +LL+E 
Sbjct: 549 YSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEK 608

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +  +   Y+I S ++A++K WD+  K+R  ++E G+ K PGCSWI +
Sbjct: 609 DPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655



 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 173/475 (36%), Positives = 259/475 (54%), Gaps = 28/475 (5%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           KLLSLLK C  +K ++Q   IH +++   +Q    L   +I+L      F  A L+F  I
Sbjct: 5   KLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTI 64

Query: 79  SRPNEYAFNVMIRGLTTAWQK---YSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLA 134
             P +     +  GL  A  K   +   L++++++     LKPD FTYP V  +C+ L  
Sbjct: 65  ENPLDIT---LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           + +G  VH+ V K G   D  V  S + MYA+C   + A K+FDE+ ERD+ SWN++IS 
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y + G  ++A+ELF  M+   F PD +TL +V+ SC  L DL  GK +   +V++   L+
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++ SAL+DMYGKCG L  A+ VF+ +  K+VV+WN+MI  Y+  G S   I LF RM  
Sbjct: 242 GFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE 301

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            G+ P   TL  +L AC+    L LGK++  Y  +  +  DIF           CG+I  
Sbjct: 302 EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGS 361

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  VF++MP TN VSWN MIS     G   EAL++F  M K G   +P+ +TF  VL AC
Sbjct: 362 AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG--VKPDAITFTSVLPAC 419

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
               ++++G+ + + +  S  L         ++D+YA+ G + EA     ++PE+
Sbjct: 420 SQLAVLEKGKEIHNFIIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 473



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 147/281 (52%), Gaps = 15/281 (5%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L S+L  C  +  +Q    IH  ++ N ++   F+   +IDL     +   A  +F  + 
Sbjct: 311 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           + N  ++NVMI G       Y  +L ++  M++ G+KPD  T+  V  +C+ L  L  G 
Sbjct: 371 KTNVVSWNVMISGYVKVGS-YLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGK 429

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H+ + +  L+ ++ V  +L+ MYA+CG +D A  +F+++ ERD VSW SMI+ Y   G
Sbjct: 430 EIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHG 489

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN---KMDLNFY 256
            A EA++LF +M++ +  PD++T +++L +C   G +  G +    ++     K  +  Y
Sbjct: 490 QAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHY 549

Query: 257 MGSALIDMYGKCGALVPARRVFDAM--VNKDVVTWNAMITA 295
             S LID+ G+ G L  A  +      + +DV   + + +A
Sbjct: 550 --SCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSA 588


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 320/555 (57%), Gaps = 28/555 (5%)

Query: 23  LREK--LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDF-NYASLLF 75
           L EK  LL L+ +C S +  +QI TQ++   I +    + +++       DF  Y+S++ 
Sbjct: 3   LTEKPVLLELISRCSSLRVFKQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVIL 62

Query: 76  HQI-SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           H I S  + +++N ++        K   ++ +Y      G  PD FT+P VF +C     
Sbjct: 63  HSIRSVLSSFSYNTLLSSYAVC-DKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSG 121

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  G  +H +V K+G  +D +V +SL+  Y  CG+  +A KVFD++  RD+VSW  +I+G
Sbjct: 122 IREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITG 181

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +++ G  KEA++ F +M  E   P+  T V  L S G +G L LGK + G ++K    ++
Sbjct: 182 FTRTGLYKEALDTFSKMDVE---PNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLIS 238

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
              G+ALIDMY KC  L  A  VF  +  KD V+WN+MI+       SNEAI LF+ M+ 
Sbjct: 239 LETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQT 298

Query: 315 -AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD   L  VLSACAS+GA+D G+WV +Y    G++ D             CG I+
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIE 358

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            ALK+F  +   N  +WNA++  LA +G  HE+L  FE M K G   +PN VTF+ +L+A
Sbjct: 359 TALKIFNGIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLG--FKPNLVTFLAILNA 416

Query: 423 CVHAGLVDEGRRLFDLMSS-SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           C H GLVDEGRR F  M +  + L PK EHY C++DL+ RAG L EA + ++ MP K D 
Sbjct: 417 CCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDV 476

Query: 482 IVLGALLGACQKQKN-TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
            + GA+L AC+ +    ++ + ++   LE+E  +SG YV+ S IFA  + WDD +++R L
Sbjct: 477 RICGAVLSACKSRGTLMELPKEILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRL 536

Query: 541 MREKGVSKTPGCSWI 555
           M+ KG+SK PG S I
Sbjct: 537 MKVKGISKVPGSSSI 551


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/518 (38%), Positives = 301/518 (58%), Gaps = 30/518 (5%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL---KPDNFTYPF 124
            NY   +   I  PN +++NV IRG + + +    ++  Y QM R G    +PD+FTYP 
Sbjct: 28  LNYCVKILKGIENPNAFSWNVTIRGFSES-ENPKDAVLAYKQMLRRGCCESRPDHFTYPV 86

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +F  CA+L   + G  +   VFK+ L+   HV ++ I M+A CG++++ARKVFDE   RD
Sbjct: 87  LFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRD 146

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           LVSWN +I+GY K+G  ++A+E++  M  E   PD++T++ ++ SC  LGDL  GK    
Sbjct: 147 LVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYE 206

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA-------------MVNKDVVTWNA 291
           +V  N + +   + +AL+DM+ KCG +  ARR+FD              M  KDVV WNA
Sbjct: 207 YVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNA 266

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MI    Q   S +A+ LF  M+ +  +PD+IT+I  LSAC+ +GALD+G W+ +Y  +  
Sbjct: 267 MIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHS 326

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  ++            CG+I +AL VF  +   N +++ A+I  LA +G A  A+  F 
Sbjct: 327 LSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFN 386

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M   G A  P+++TFIG+LSAC H G++  GR  F  M S F L P+ +HYS MVDL  
Sbjct: 387 EMIDAGIA--PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLG 444

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG L EA   +E MP + D  V GALL  C+   N  + ++  + LLE++ S+SG YV+
Sbjct: 445 RAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVL 504

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              ++    MW+D+ + R +M E+GV K PGCS I ++
Sbjct: 505 LDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 542


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 326/550 (59%), Gaps = 19/550 (3%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEY 84
           SL+        + QI+ ++L+  +Q   FL+ ++++    + + + A  LF +   P+ +
Sbjct: 80  SLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVF 139

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N ++R  +     + H++++Y +M+   + PD F++P V  +C+ L AL  G  VH  
Sbjct: 140 LWNAIVRCYSRH-GFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQ 198

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           +F+ G + D  V + L+ +YA+CG++  A  VF  + +R +VSW S+ISGY++ G   EA
Sbjct: 199 IFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEA 258

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + +F  MR+    PD I LVSVL +  D+ DL  GK + G V+K  ++  F +  +L  +
Sbjct: 259 LRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSL 318

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG ++ AR  F+ + N  ++ WNAMI+ Y +NG + EAI LF  MK   + PD IT+
Sbjct: 319 YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITV 378

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
              ++ACA IG+L+L +W+D+Y S    R+D+            CGS+D A  VF+ +P 
Sbjct: 379 TSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD 438

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + V W+AM+     +G+  E+++LF  M + G    PNDVTF+G+L+AC ++GLV+EG 
Sbjct: 439 KDVVVWSAMMVGYGLHGQGRESIILFHAMRQAG--VSPNDVTFVGLLTACKNSGLVEEGW 496

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            LF  M   +G+ P+ +HY+C+VDL  RAGHL  A++FV  MP +    V GALL AC+ 
Sbjct: 497 DLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKI 555

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
            ++  + +   + L  ++  N+G+YV  S ++A+  +WD  AK+R LMREKG++K  G S
Sbjct: 556 HRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYS 615

Query: 554 WIGIDDPKQS 563
            I I+   Q+
Sbjct: 616 VIEINGKLQA 625



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
            KPD F    +     + +   H   +++ +   GL     +   L+   +  G++  AR
Sbjct: 72  FKPDKFYASLI----DDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCAR 127

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           K+FD+  + D+  WN+++  YS+ G+   A+E++ RM+     PD  +   VL +C  L 
Sbjct: 128 KLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALP 187

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L +G+ V G + ++  + + ++ + L+ +Y KCG +V A  VF  +V++ +V+W ++I+
Sbjct: 188 ALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIIS 247

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            YAQNG   EA+ +F+ M+   V PD I L+ VL A   +  L+ GK +     + GL  
Sbjct: 248 GYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEC 307

Query: 355 DI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           +             CG +  A   F  +   + + WNAMIS    NG A EA+ LF  M 
Sbjct: 308 EFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMK 367

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS-SSF--GLIPKSEHYSCMVDLYA 460
            +    RP+ +T    ++AC   G ++  R + + +S S F   +I  +     ++D YA
Sbjct: 368 SKN--IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTS----LIDTYA 421

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + G +  A    +R+P+K D +V  A++
Sbjct: 422 KCGSVDMARFVFDRIPDK-DVVVWSAMM 448


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 323/546 (59%), Gaps = 21/546 (3%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEY 84
           SL+        ++QIH ++L+  +Q   FL+ ++I       D  +A  +F  + RP  +
Sbjct: 26  SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +IRG +     +  +L +Y  M+   + PD+FT+P +  +C+ L  L  G  VH+ 
Sbjct: 86  PWNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGYSKMGYAK 202
           VF++G D D  V + LI +YA+C +L SAR VF+   + ER +VSW +++S Y++ G   
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+E+F +MR+ +  PD + LVSVL +   L DL  G+ +   VVK  +++   +  +L 
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG +  A+ +FD M + +++ WNAMI+ YA+NG + EAI +F+ M    V PD I
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           ++   +SACA +G+L+  + + +Y  +   R D+F           CGS++ A  VF+  
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + V W+AMI     +GRA EA+ L+  M  E G   PNDVTF+G+L AC H+G+V E
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAM--ERGGVHPNDVTFLGLLMACNHSGMVRE 442

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G   F+ M+    + P+ +HY+C++DL  RAGHL +A++ ++ MP +    V GALL AC
Sbjct: 443 GWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +K ++ ++ +   Q L  I+ SN+G+YV  S ++A  ++WD  A++R  M+EKG++K  G
Sbjct: 502 KKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561

Query: 552 CSWIGI 557
           CSW+ +
Sbjct: 562 CSWVEV 567


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/582 (36%), Positives = 319/582 (54%), Gaps = 54/582 (9%)

Query: 29  SLLKKCPSTKTVQQIHTQML-INFIQKPN-----FLLIRIIDLKDFNYASLLFHQISRPN 82
           +L ++C S K ++QIH QML  N +  P      F           +YA  +F QI +PN
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPN 203

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            Y++N++IR L T+       L     +      P+ FT+P +  + A       G +VH
Sbjct: 204 LYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGY 200
               K    +D  V +SLI  YA CG LD A  VF+ I    +D+VSWNSM++G+ + GY
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGY 323

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             +A++LF RMR E   P+ +T+VSV+ +C    +L LG+ V  ++ +N+M +N  + +A
Sbjct: 324 PDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNA 383

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTW------------------------------- 289
            IDM+ KCG +  AR +FD M  +DVV+W                               
Sbjct: 384 TIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKY--AGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           N +I+ Y Q+G   EA+ +F  ++   +G  PD++TL+  LSACA +GA+D+G+W+  Y 
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503

Query: 348 SQRGLRH---------DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            +  ++          D++   G ++ A++VF  +   +   W+AMI+ LA +GR   A+
Sbjct: 504 KKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAI 563

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LF  M +     +PN VTF  +L AC H+GLVDEG+RLFD M   +G++PK++HYSCMV
Sbjct: 564 ELFLDMQET--QVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMV 621

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D+  RAGHL EA  F+E MP      V GALLGAC    N +++++    LLEIE  N G
Sbjct: 622 DVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHG 681

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            YV+ S ++A    W+  +++R  MR+ G+ K  GCS I ID
Sbjct: 682 AYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEID 723


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/550 (36%), Positives = 319/550 (58%), Gaps = 18/550 (3%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID--LKDFNYASLLFHQISR 80
           LR  +L    KC +   ++Q  + ++ + +    F L  I+    KD  Y  LLF +++ 
Sbjct: 7   LRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLLLFDRLAT 66

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P  + +N +IRG + + Q     L  Y +++  G+ PD  T+P +  + + L   N    
Sbjct: 67  PYIFLWNTIIRGFSASSQP-QMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQ 124

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            ++ + K GLD D  V +SL++ +A CG +D +R++F E  ++D+VSW ++I+G  + G 
Sbjct: 125 FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGR 184

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGS 259
           A EA+E F  MR      DE+T+VSVL +   L D+  G+WV GF V++ ++  + Y+GS
Sbjct: 185 AVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY KCG    A +VF+ M  +++V+W A+I  Y Q     EA+ +F  M   G+ P
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYA--SQRGLRH-------DIF--CGSIDDALKVF 368
           ++ T+   L+ACA +G+LD G+W+ +Y   S+ GL         D++  CG +D+AL VF
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVF 364

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E +P  +   W AMI+ LA  G A  +L LF +M +     +PN VTF+GVLSAC H GL
Sbjct: 365 EKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRS--RVQPNGVTFLGVLSACAHGGL 422

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VDEG  LF LM   + L P  +HY CMVDL  RAG L EA  F+E MP +    V GAL 
Sbjct: 423 VDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALF 482

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
             C   K  ++ + +   L++++  +SG Y++ + +++  + W+ +A +R LM+ KGV K
Sbjct: 483 SGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDK 542

Query: 549 TPGCSWIGID 558
           +PGCSWI ++
Sbjct: 543 SPGCSWIEVN 552


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 315/571 (55%), Gaps = 54/571 (9%)

Query: 39  TVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIR 91
           +++ IH QM+   +   N+ L ++I+            YA  +F  I  PN   +N M R
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD 151
           G   +    S +L LY  M  LGL P+ +T+PF+  SCA   A   G  +H  V K+G D
Sbjct: 62  GHALSSDPVS-ALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFD-------------------------------EI 180
            D +V  SLI+MY + G+L+ ARKVFD                               EI
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
             +D+VSWN+MISGY++ G  KEA+ELF  M +    PDE T+VSV+ +C     + LG+
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V  ++  +    N  + +ALID+Y KCG +  A  +F+ +  KDV++WN +I  Y    
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY-----------ASQ 349
           L  EA++LF  M  +G +P+ +T++ +L ACA +GA+++G+W+  Y           +S 
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 350 RGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
           R    D++  CG I+ A +VF+ +   +  SWNAMI   A +GRA+ A  +F RM K   
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK--N 418

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              P+D+TF+G+LSAC H+G++D GR +F  M   + + PK EHY CM+DL   +G   E
Sbjct: 419 EIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKE 478

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A + +  M  + D ++  +LL AC+   N ++ +   Q L++IE  N G+YV+ S I+A 
Sbjct: 479 AEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYAT 538

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              W++ AK+RAL+ +KG+ K PGCS I ID
Sbjct: 539 AGRWNEVAKIRALLNDKGMKKVPGCSSIEID 569


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 316/563 (56%), Gaps = 50/563 (8%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISRPNEYAFNVMIRG 92
           + V+++H  ++++ +    + + ++I        D  +A  +F QI  P  + +N ++RG
Sbjct: 325 EAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRG 384

Query: 93  LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
           L  +      ++  Y + +  G+KPDN T+PFV  +CA   A   G  +HS V K+G   
Sbjct: 385 LAQS-DAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLL 443

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           D  VS+SLI +YA CG L  AR +FDE+  +D+VSWNS+I GYS+    KE + LF  M+
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQ 503

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID--------- 263
            EE   D++T+V V+ +C  LGD  +   +  ++ +N ++++ Y+G+ LID         
Sbjct: 504 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQ 563

Query: 264 ----------------------MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
                                  Y K G LV A+++FD + NKD+++W++MI AY+Q   
Sbjct: 564 SAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 623

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
            ++++ LF +M+ A V PD + +  VLSACA +GALDLGKW+  Y  +  ++ D      
Sbjct: 624 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENS 683

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG + +AL+VF +M   + +SWN++I  LA NG   EAL +F  M  EG   R
Sbjct: 684 LIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEG--PR 741

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN+VTF+GVL AC +  LV EG   F+ M +   L P+ +HY C+V + +RAG L +A +
Sbjct: 742 PNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKN 801

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
           F+  MP   D +V   LLGAC+   N  V++   + L E++ SNSG+Y++ S I+A+   
Sbjct: 802 FINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADR 861

Query: 531 WDDSAKMRALMREKGVSKTPGCS 553
           W D+  +R  M +  V K+P CS
Sbjct: 862 WSDALNVRQWMADTAVRKSPACS 884



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + +I  +   G +  AR +FD M  ++VV+W  +I  Y +  L  EA+ LF  M   G++
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGIS 69

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG-----------SIDDALKV 367
           P +IT++ V+ A +++G + +G+ +  Y  ++G+  D   G           S+ ++LKV
Sbjct: 70  PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 129

Query: 368 FEDM-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           F++M    N VSW ++IS  A +G + EAL LF  M + G   RPN +TF+ V++AC H 
Sbjct: 130 FDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG--IRPNRITFLSVINACSHG 187

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV++G   F  M   + + P+ +H+ C++D+  RAG L EA   +E +P +V+ IV   
Sbjct: 188 GLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRI 247

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLG C K    ++ +R ++++ ++E  + G++ + S +   L  + D+ + R L+ E+ +
Sbjct: 248 LLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKI 307

Query: 547 SKTPGCSWI 555
            K PG + +
Sbjct: 308 VKVPGLALV 316



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 17/266 (6%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           +IT +A  G+++ AR +FD++  R++VSW  +I GY++     EAV LF  M      P 
Sbjct: 12  VITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPS 71

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           EIT+++V+ +  +LG +++G+ + G+ VK  +  +  +G++LID+Y K G++  + +VFD
Sbjct: 72  EITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 131

Query: 280 AMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
            M++ +++V+W ++I+ +A +GLS EA+ LF  M+ AG+ P++IT + V++AC+  G ++
Sbjct: 132 EMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVE 191

Query: 339 LG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPV-TNEVSWNAMISA 385
            G       V +Y     ++H     D+    G + +A ++ E +PV  N + W  ++  
Sbjct: 192 QGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGC 251

Query: 386 LAFNGRAH---EALLLFERMSKEGGA 408
            +  G       A+ +   + +E G 
Sbjct: 252 CSKYGEVEMGKRAIKMISDLERESGG 277



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 4/237 (1%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           +  YA LLF Q+   N  ++  +I G T A   Y+ ++ L+  M   G+ P   T   V 
Sbjct: 21  EIEYARLLFDQMPCRNVVSWTGLIDGYTRACL-YAEAVALFRHMMAGGISPSEITVLAVV 79

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDL 185
            + +NL  +  G  +H    K G+  D  V +SLI +YA+ G + ++ KVFDE+ + R+L
Sbjct: 80  PAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 139

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEG 244
           VSW S+ISG++  G + EA+ELF  MR     P+ IT +SV+ +C   G +  G  + + 
Sbjct: 140 VSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKS 199

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNG 300
            V +  +D        +IDM G+ G L  A ++ + + V  +V+ W  ++   ++ G
Sbjct: 200 MVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYG 256


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 320/577 (55%), Gaps = 58/577 (10%)

Query: 37  TKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQISRPNEYAFNVM 89
           + +V+ IH QM+   +   N+ L ++++          F YA  +F  I  PN   +N M
Sbjct: 1   SSSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTM 60

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
            RG   +    S +LKLY  M  LGL PD++T+PF+  SCA       G  +H  V K+G
Sbjct: 61  FRGHALSSDPVS-ALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLG 119

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFD------------------------------- 178
            D D +V  SLI+MYA+ G+L+ ARKVFD                               
Sbjct: 120 FDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFD 179

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLV 237
           EI  +D+VSWN+MISGY + G  KEA+ELF  M       PDE T+V+V+ +C     + 
Sbjct: 180 EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LG+ V  ++  +    N  + +ALID+Y K G +  A  +FD + NKDV++WN +I  Y 
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--GLRHD 355
              L  EA++LF  M  +G  P+ +T++ +L ACA +GA+D+G+W+  Y +++  G+  +
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359

Query: 356 IF------------CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           +             CG ID A +VF+       +S WNAMIS  A +GRA+ A  +F RM
Sbjct: 360 VSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRM 419

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G    P+D+TF+G+LSAC H+G++D GR +F  M+  + + PK EHY CM+DL   +
Sbjct: 420 RMNG--IEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHS 477

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G   EA + +  MP + D ++  +LL AC+   N ++ +   + L++IE  NSG+YV+ S
Sbjct: 478 GLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLS 537

Query: 523 KIFANLKMWDDSAKMRALMREKGV-SKTPGCSWIGID 558
            I+A    W++ AK+RAL+ +KG+  K PGCS I ID
Sbjct: 538 NIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEID 574


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 327/591 (55%), Gaps = 50/591 (8%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLL---IRIIDLKDFNY- 70
           T L   S +  K   + K   ST T +++H  ++   +    FL+   IR   L   N  
Sbjct: 8   TRLFTSSSMAPKSGRVSKNSISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLH 67

Query: 71  -ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            A L+F+QI  P    +N MIRGL+ +      ++ +Y +M   G+  +N T  F+F +C
Sbjct: 68  KAHLVFNQIECPTLVVWNHMIRGLSQSDHPVE-AIHMYTRMHHQGITGNNLTLIFLFKAC 126

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A +  +  G  +H    K+G +    VS++LI MYA CG+L  A+K+FD + +RDLVSWN
Sbjct: 127 ARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWN 186

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I GYS+    KE + LF  M       D +T+V ++ +C  LGD      +  ++ +N
Sbjct: 187 TLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKEN 246

Query: 250 KMDLNFYMGSALIDMYG-------------------------------KCGALVPARRVF 278
            ++++ Y+G+ LIDMYG                               K G L  AR++F
Sbjct: 247 NLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLF 306

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D M  +DV++W +MIT Y+Q    ++A+ LF  M  A V PDK+T+  VLSACA +G LD
Sbjct: 307 DNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLD 366

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           +G  V  Y  + G++ DI+           CG ++ AL+VF  M   + VSW ++IS LA
Sbjct: 367 VGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA 426

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            NG A+ AL LF +M +EG   +P   TF+G+L AC HAGLV++G   F+ M S  GL+P
Sbjct: 427 VNGFANSALDLFSQMLREG--VQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVP 484

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             +HY C+VDL +R+G++ +A++F+++MP   D +V   LL AC+   N  +++   + L
Sbjct: 485 AMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRL 544

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           LE++  +SGNYV+ S  +A +  WDD+ KMR LM +  V K  G S I +D
Sbjct: 545 LELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVD 595


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/507 (39%), Positives = 304/507 (59%), Gaps = 16/507 (3%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFIS 128
           YA  +F      +   +N M+R    +      +L+ Y +M +R    PD FT+P +   
Sbjct: 30  YAYSVFAHTRVLDVLTWNSMLRAFVNS-NMPRRALQSYTEMLERSRNVPDRFTFPSLLKG 88

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA LL    G  +H  V K  L  D ++  +L+ MYA CG L SAR +F+ +  R+ V W
Sbjct: 89  CALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            SMISGY K     EA+ L+ +M E+ F PDE+T+ +++ +C +L DL +G  +   + +
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             M +   +GSAL++MY KCG L  AR+VFD + +KDV  W+A+I  Y +N  S EA+ L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 309 FNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF- 357
           F  +   + + P+++T++ V+SACA +G L+ G+WV  Y ++    H         D+F 
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG ID A ++F+ M   + +SWN+M++ LA +G   EAL  F  M  +    +P+++TF
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLM--QTTDLQPDEITF 386

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           IGVL+AC HAGLV EG++LF  + + +G+  KSEHY CMVDL  RAG L+EA +F+  MP
Sbjct: 387 IGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  + G++LGAC+   N ++ +   + LLE+E +N G Y++ S I+A  KMW++  K
Sbjct: 447 LQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKK 506

Query: 537 MRALMREKGVSKTPGCSWIGIDDPKQS 563
           +R LM EKG+ KTPGCS + ID+   S
Sbjct: 507 VRELMNEKGIQKTPGCSSVVIDNIAHS 533


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 317/550 (57%), Gaps = 21/550 (3%)

Query: 28  LSLLKKCPSTK---TVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISR 80
           + +LK+C   K     +Q+H  ++ + +++     N LL   I+      A  +F  + +
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVK 91

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +  ++N MI G     +    +++L+ +M   G++P+  TY  +  +CA+L AL  G  
Sbjct: 92  KSGASWNAMIAGYVEH-KHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ +   GL+ D  V  +L+ MY +CG ++ AR++FD +   D++SW  MI  Y++ G 
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            KEA  L  +M +E F P+ IT VS+L +C   G L   K V    +   ++L+  +G+A
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTA 270

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ MY K G++  AR VFD M  +DVV+WN MI A+A++G  +EA  LF +M+  G  PD
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPD 330

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFE 369
            I  + +L+ACAS GAL+  K + ++A   GL  D+             GSIDDA  VF+
Sbjct: 331 AIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFD 390

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M V N VSWNAMIS LA +G   +AL +F RM+  G   +P+ VTF+ VLSAC HAGLV
Sbjct: 391 RMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHG--VKPDRVTFVAVLSACSHAGLV 448

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           DEGR  +  M+  +G+ P   H +CMVDL  RAG L EA  F++ M    DE   GALLG
Sbjct: 449 DEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLG 508

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           +C+   N ++ + V +  L+++  N+  YV+ S I+A    WD  + +R +MRE+G+ K 
Sbjct: 509 SCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKE 568

Query: 550 PGCSWIGIDD 559
           PG SWI +D+
Sbjct: 569 PGRSWIEVDN 578



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 216/387 (55%), Gaps = 18/387 (4%)

Query: 110 MKRL--GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
           M RL  GL  D+F Y  V   C     L     VH  + K  ++++ HV ++L+ +Y  C
Sbjct: 17  MNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIEC 76

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G+L  AR VFD + ++   SWN+MI+GY +  +A++A+ LF  M  E   P+  T + +L
Sbjct: 77  GRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIIL 136

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  L  L  GK V   +    ++ +  +G+AL+ MYGKCG++  ARR+FD ++N D++
Sbjct: 137 KACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDII 196

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W  MI AYAQ+G   EA  L  +M+  G  P+ IT + +L+ACAS GAL   K V ++A
Sbjct: 197 SWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHA 256

Query: 348 SQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              GL  D+             GSIDDA  VF+ M V + VSWN MI A A +GR HEA 
Sbjct: 257 LDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAY 316

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LF +M  EG   +P+ + F+ +L+AC  AG ++  +++      S GL       + +V
Sbjct: 317 DLFLQMQTEG--CKPDAIMFLSILNACASAGALEWVKKIHRHALDS-GLEVDVRVGTALV 373

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIV 483
            +Y+++G + +A    +RM  KV  +V
Sbjct: 374 HMYSKSGSIDDARVVFDRM--KVRNVV 398



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 156/299 (52%), Gaps = 15/299 (5%)

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ +     +   + D    V VL  C    DL+  K V   ++K++M+ N ++ + L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            +Y +CG L  AR VFDA+V K   +WNAMI  Y ++  + +A+ LF  M + GV P+  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T + +L ACAS+ AL  GK V       GL  D+            CGSI++A ++F+++
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + +SW  MI A A +G   EA  L  +M +EG   +PN +T++ +L+AC   G +  
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEG--FKPNAITYVSILNACASEGALKW 248

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            +R+    +   GL       + +V +YA++G + +A    +RM  + D +    ++GA
Sbjct: 249 VKRVHR-HALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGA 305


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/527 (38%), Positives = 307/527 (58%), Gaps = 45/527 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF QI RP    +N+MIRG + + Q  + ++++Y  M R GL  +N TY F+F +CA + 
Sbjct: 33  LFQQIHRPTLPFWNIMIRGWSVSDQP-NEAIRMYNLMYRQGLLGNNLTYLFLFKACARVP 91

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            ++ G ++H+ V K+G +   +VS++LI MY  CG L  A+KVFDE+ ERDLVSWNS++ 
Sbjct: 92  DVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVC 151

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY +    +E + +F  MR      D +T+V V+ +C  LG+  +   +  ++ +N +++
Sbjct: 152 GYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEI 211

Query: 254 NFYMGSALIDMYG-------------------------------KCGALVPARRVFDAMV 282
           + Y+G+ LIDMYG                               K G LV AR +FDAM 
Sbjct: 212 DVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMS 271

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +DV++W  MIT+Y+Q G   EA+ LF  M  + V PD+IT+  VLSACA  G+LD+G+ 
Sbjct: 272 QRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEA 331

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
              Y  +  ++ DI+           CG ++ AL+VF++M   + VSW ++IS LA NG 
Sbjct: 332 AHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGF 391

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A  AL  F RM +E    +P+   F+G+L AC HAGLVD+G   F+ M   +GL P+ +H
Sbjct: 392 ADSALDYFSRMLRE--VVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKH 449

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y C+VDL +R+G+L  A++F++ MP   D ++   LL A Q   N  +++   + LLE++
Sbjct: 450 YGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELD 509

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            SNSGNYV+SS  +A    W+D+ KMR LM +  V K  G S I ++
Sbjct: 510 PSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 175/374 (46%), Gaps = 50/374 (13%)

Query: 150 LDEDDHVSHSLITMYARC-GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           L  D    ++LI  YA     +  A  +F +I    L  WN MI G+S      EA+ ++
Sbjct: 6   LRTDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMY 65

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             M  +  L + +T + +  +C  + D+  G  +   V+K   + + Y+ +ALI+MYG C
Sbjct: 66  NLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSC 125

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G L  A++VFD M  +D+V+WN+++  Y Q     E + +F  M+ AGV  D +T++ V+
Sbjct: 126 GHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVV 185

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEV 377
            AC S+G   +   +  Y  +  +  D++ G+           +  A  VF+ M   N V
Sbjct: 186 LACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLV 245

Query: 378 SWNA-------------------------------MISALAFNGRAHEALLLFERMSKEG 406
           SWNA                               MI++ +  G+  EAL LF+ M +  
Sbjct: 246 SWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMES- 304

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGH 464
              +P+++T   VLSAC H G +D G    D +        K++ Y  + ++D+Y + G 
Sbjct: 305 -KVKPDEITVASVLSACAHTGSLDVGEAAHDYIQK---YDVKADIYVGNALIDMYCKCGV 360

Query: 465 LSEAWDFVERMPEK 478
           + +A +  + M +K
Sbjct: 361 VEKALEVFKEMRKK 374


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 334/553 (60%), Gaps = 22/553 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISR 80
           + +L+L++ C + + ++QIH + +I+ +    F++ +II+        +YA+ +F+Q   
Sbjct: 7   KSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQE 66

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGV 139
           P+ + +N MIR  +++ Q    ++ +Y +M+    +  D +TYPFVF +CA+  A+  G 
Sbjct: 67  PDGFIYNAMIRAYSSS-QTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGK 125

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH  + +IG + D  +  SL+  Y  CG++ +A++VFDE   +D+V WN++I+GY++ G
Sbjct: 126 EVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQG 185

Query: 200 YAKEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYM 257
              ++  +F  M E +E  P+E T++ ++ +C +  +L LG+ + G+++K+  +     +
Sbjct: 186 MVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKL 245

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +ALI++Y KCG L  AR++FD +  K+ V WN++I  Y Q G  NE I L   M  + +
Sbjct: 246 EAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNL 305

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PD+ T+ GVLSACA +GA +LG WV ++A ++G+  D+F           CG I  A K
Sbjct: 306 KPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARK 364

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF+ M   N  +WNA++S  A +G+A  A+ LF  M + G  ARP+ +TF+ VL AC H+
Sbjct: 365 VFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESG--ARPDSITFLAVLHACAHS 422

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV+ G++ FDLM   + + P+ EHY CMVDL  RAG L EA + ++ M  + + +V GA
Sbjct: 423 GLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGA 482

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC    N ++ +     ++++ + + G+YVI + ++A+ + ++    +R +M EKG+
Sbjct: 483 LLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGI 542

Query: 547 SKTPGCSWIGIDD 559
            K+ GCS I I D
Sbjct: 543 CKSHGCSMIEIGD 555


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/535 (37%), Positives = 305/535 (57%), Gaps = 47/535 (8%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
            +YA  +F  I  PN   +N M RG        + +LKLY  M  LGL P+++++PF+  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVT-ALKLYVCMISLGLLPNSYSFPFLLK 73

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD---------------- 171
           SCA   AL  G  +H  V K+G D D +V+ SLI+MYA+ G+L+                
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 172 ---------------SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                          +ARK+FDEI  +D+VSWN+MISGY +    KEA+EL+  M +   
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            PDE T+V+V+ +C   G + LG+ +  ++  +    N  + + LID+Y KCG +  A  
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACG 253

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F  +  KDV++WN +I  +    L  EA++LF  M  +G +P+ +T++ VL ACA +GA
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 337 LDLGKWVDKYASQR--GLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMI 383
           +D+G+W+  Y ++R  G+ +         D++  CG I+ A +VF+ M   +  SWNAMI
Sbjct: 314 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 373

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
              A +G+A+ A  LF +M K G    P+D+TF+G+LSAC H+G++D GR +F  MS  +
Sbjct: 374 FGFAMHGKANAAFDLFSKMRKNG--IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDY 431

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
            + PK EHY CM+DL    G   EA + +  MP + D ++  +LL AC+   N ++ +  
Sbjct: 432 KITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESY 491

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            Q L++IE  N G+YV+ S I+A    WD  AK+R L+ +KG+ K PGCS I ID
Sbjct: 492 AQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/533 (38%), Positives = 298/533 (55%), Gaps = 47/533 (8%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YA+ +F  I  PN+  +N MIRG   +    S SL LY  M  LGL P+++T+PF+  SC
Sbjct: 16  YATSVFETIQEPNQLIWNTMIRGHALSSDPVS-SLTLYVCMVSLGLLPNSYTFPFLLKSC 74

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY------------------------- 164
           A       G  +H  V K+G D D +V  SLI+MY                         
Sbjct: 75  AKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYT 134

Query: 165 ------ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
                 A  G + SA+K+FDEI  +D+VSWN+MISGY++ G  KEA+ELF  M +    P
Sbjct: 135 ALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRP 194

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           DE T V+VL +C   G + LG+ V  +V  +  D N  + +ALID+Y KCG +  A  +F
Sbjct: 195 DESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             +  KDV++WN +I  Y    L  EA++LF  M  +G  P+ +T++ VL ACA +GA+D
Sbjct: 255 QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAID 314

Query: 339 LGKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           +G+W+  Y  +R         LR  +      CG I+ A +VF  M   +  SWNAMI  
Sbjct: 315 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 374

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +GRA  +  LF RM K G    P+D+TF+G+LSAC H+G++D GR +F  M+  + +
Sbjct: 375 FAMHGRADASFDLFSRMRKIG--IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKM 432

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            PK EHY CM+DL   +G   EA + +  M  + D ++  +LL AC+   N ++++   Q
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            L++IE  N  +Y++ S I+A+   W+D A++RAL+  K + K PGCS I +D
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVD 545



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 167/352 (47%), Gaps = 45/352 (12%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  A  VF+ I+E + + WN+MI G++       ++ L+  M     LP+  T   +L S
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM------------------------- 264
           C        G+ + G V+K   DL+ Y+ ++LI M                         
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 265 ------YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                 Y   G +  A+++FD +  KDVV+WNAMI+ YA+ G   EA+ LF  M    V 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 319 PDKITLIGVLSACASIGALDLGK----WVDKYASQRGLR-----HDIF--CGSIDDALKV 367
           PD+ T + VLSACA  G+++LG+    WVD +     L+      D++  CG ++ A  +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ +   + +SWN +I          EALLLF+ M + G    PNDVT + VL AC H G
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG--ETPNDVTMLSVLPACAHLG 311

Query: 428 LVDEGRRLFDLMSSSF-GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +D GR +   +     G+   S   + ++D+YA+ G +  A      M  K
Sbjct: 312 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHK 363


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/485 (39%), Positives = 291/485 (60%), Gaps = 18/485 (3%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           FN ++ G      +   +  +Y ++ + G  PD FT+P V  SCA  + +  G  VH  +
Sbjct: 2   FNALVSGYAIG-DRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K+G   + +V +SL+  Y+ C +   A +VFDE+  RD+VSW  +ISGY + G   EAV
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            LF RM  E   P+  T VSVL +CG  G L +GK + G   K+   +   + +AL+DMY
Sbjct: 121 GLFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMY 177

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG L  A++VFD +  KD+V+W ++I+   Q     EA+ LF  M+ +G+ PD I L 
Sbjct: 178 VKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILT 237

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
            VLSACA +GALD G+WV ++  ++ ++ DI            CG I+ ++++F  MP  
Sbjct: 238 SVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHK 297

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           N ++WNA+++ LA +G A++ L LFE M + G   RPN+VTF+ +L+AC H GLV+EGR+
Sbjct: 298 NVLTWNALLNGLAMHGHAYKVLELFEEMVRVG--MRPNEVTFLAILTACCHCGLVNEGRQ 355

Query: 435 LFDLM-SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            F+ M    + L P+ EHY CMVDL  RA  L EA +  + MP   D  ++GALL AC++
Sbjct: 356 YFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKE 415

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             NT++ Q ++   +E++S +SG YV+ S I A  + WDD  ++R LM+EKG+ K PG +
Sbjct: 416 NGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGST 475

Query: 554 WIGID 558
            I +D
Sbjct: 476 VIELD 480



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 192/350 (54%), Gaps = 18/350 (5%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K F  AS +F ++   +  ++  +I G   A   +  ++ L+    R+ ++P+  T+  V
Sbjct: 83  KRFGDASRVFDEMLVRDVVSWTGVISGYVRA-GLFDEAVGLFL---RMDVEPNAATFVSV 138

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            ++C     L+ G  +H   FK        VS++L+ MY +CG L  A++VFDE+ E+D+
Sbjct: 139 LVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDI 198

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW S+ISG  +    KEA+ELF  M+     PD I L SVL +C  LG L  G+WV   
Sbjct: 199 VSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEH 258

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           + +  +  +  +G+A++DMY KCG +  + ++F+ M +K+V+TWNA++   A +G + + 
Sbjct: 259 IDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKV 318

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK----WV--DKYASQRGLRH----- 354
           + LF  M   G+ P+++T + +L+AC   G ++ G+    W+   +Y     L H     
Sbjct: 319 LELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMV 378

Query: 355 DIFCGS--IDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFER 401
           D+ C +  +D+AL++ + MP++ +V    A++SA   NG       + +R
Sbjct: 379 DLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEILDR 428


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/549 (38%), Positives = 316/549 (57%), Gaps = 26/549 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDF-NYASLLFHQI-SR 80
           LL L+ +C S +  +QI TQ++   + + + ++ +++       DF +Y+S++ H I S 
Sbjct: 9   LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            + +++N ++        K   ++  Y      G  PD FT+P VF +C     +  G  
Sbjct: 69  LSSFSYNTLLSSYAVC-DKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQ 127

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V K+G  +D +V +SL+  Y  CG+  +A KVF E+  RD+VSW  +I+G+++ G 
Sbjct: 128 IHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGL 187

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            KEA++ F +M  E   P+  T V VL S G +G L LGK + G ++K    ++   G+A
Sbjct: 188 YKEALDTFSKMDVE---PNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNA 244

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY-AGVNP 319
           LIDMY KC  L  A RVF  +  KD V+WN+MI+       S EAI LF+ M+  +G+ P
Sbjct: 245 LIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKP 304

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D   L  VLSACAS+GA+D G+WV +Y    G++ D             CG I+ AL++F
Sbjct: 305 DGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIF 364

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             +   N  +WNA++  LA +G   E+L  FE M K G   +PN VTF+  L+AC H GL
Sbjct: 365 NGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLG--FKPNLVTFLAALNACCHTGL 422

Query: 429 VDEGRRLFDLMSS-SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           VDEGRR F  M S  + L PK EHY CM+DL  RAG L EA + V+ MP K D  + GA+
Sbjct: 423 VDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAI 482

Query: 488 LGACQKQKN-TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           L AC+ +    ++ + ++   L+IE  +SG YV+ S IFA  + WDD A++R LM+ KG+
Sbjct: 483 LSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGI 542

Query: 547 SKTPGCSWI 555
           SK PG S+I
Sbjct: 543 SKVPGSSYI 551


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/580 (34%), Positives = 323/580 (55%), Gaps = 50/580 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK-----DFNYASLLFHQISRP 81
           L S L    S   ++Q+H Q+L + + +   LL++++          +YA  +F+ I +P
Sbjct: 26  LFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKP 85

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             +  N  +R L+ + ++   +L +Y +M+  GL  D F++P +  + + + +L  G+ +
Sbjct: 86  ETHLCNRFLRELSRS-EEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEI 144

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K+G D D  V   L+ MYA CG++  AR +FD++  RD+V+W+ MI GY + G  
Sbjct: 145 HGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF 204

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            +A+ LF  M+     PDE+ L +VL +CG  G+L  GK +  F+++N + ++ ++ SAL
Sbjct: 205 NDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSAL 264

Query: 262 IDMYGKCGAL----------VP---------------------ARRVFDAMVNKDVVTWN 290
           + MY  CG++           P                     AR VF+ MV KD+V W+
Sbjct: 265 VTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWS 324

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           AMI+ YA++    EA+ LFN M+  G+ PD++T++ V++ACA +GALD  KW+  +  + 
Sbjct: 325 AMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKN 384

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           G    +            CGS++ A ++F+ MP  N +SW  MISA A +G A  AL  F
Sbjct: 385 GFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFF 444

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            +M  E     PN +TF+GVL AC HAGLV+EGR++F  M +   + PK  HY CMVDL+
Sbjct: 445 HQMEDEN--IEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLF 502

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA + VE MP   + I+ G+L+ AC+     ++ +   + LLE++  + G +V
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHV 562

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             S I+A  + W+D  ++R LM+ KG+SK  GCS   +++
Sbjct: 563 FLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNN 602


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 303/507 (59%), Gaps = 16/507 (3%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFIS 128
           YA  +F      +   +N M+R    +      +L+ Y +M +R    PD FT+P +   
Sbjct: 30  YAYSVFAHTRELDVLTWNSMLRAFVNS-NMPRRALQSYTEMLERSRNVPDRFTFPSLLKG 88

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA LL    G  +H  V K  L  D ++  +L+ MYA CG L SAR +F+ +  R+ V W
Sbjct: 89  CALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            SMISGY K     EA+ L+ +M E+ F PDE+T+ +++ +C +L DL +G  +   + +
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             M +   +GSAL++MY KCG L  AR+VFD + +KDV  W+A+I  Y +N  S EA+ L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 309 FNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF- 357
           F  +   + + P+++T++ V+SACA +G L+ G+WV  Y ++    H         D+F 
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG ID A ++F+ M   + +SWN+M++  A +G   EAL  F  M  +    +P+++TF
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLM--QTTDLQPDEITF 386

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           IGVL+AC HAGLV EG++LF  + + +G+  KSEHY CMVDL  RAG L+EA +F+  MP
Sbjct: 387 IGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  + G++LGAC+   N ++ +   + LL++E +N G Y++ S I+A  KMW++  K
Sbjct: 447 LQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKK 506

Query: 537 MRALMREKGVSKTPGCSWIGIDDPKQS 563
           +R LM EKG+ KTPGCS + ID+   S
Sbjct: 507 VRELMNEKGIQKTPGCSSVVIDNIAHS 533


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/616 (35%), Positives = 333/616 (54%), Gaps = 62/616 (10%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLR------EKLLSLLKKCPSTKTVQQIHTQMLINFIQK 54
           ++ R +  SRH + +    P LLR      +  +  L+ C S   ++QI +Q+    ++ 
Sbjct: 114 IIRRVQFISRHFSSSPHLVPVLLRISKLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEG 173

Query: 55  PNFLLIRII------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYY 108
               + +++       L +  YA  +F+ +  P+ + +NVM++ +          L L+ 
Sbjct: 174 DRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVK-MYAKRGILRKVLLLFQ 232

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           Q++  GL PD FTYPFV  +   L  +  G  V   + K G+D D++V +SLI MY    
Sbjct: 233 QLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELS 292

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE-EFLPDEITLVSVL 227
            +++A+K+FDE+  RD VSWN MISGY +    ++A+  F  M++E    PDE T+VS L
Sbjct: 293 NVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTL 352

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK--- 284
            +C  L +L LG  +  +V K ++     + +AL+DMY KCG L  AR +FD M  K   
Sbjct: 353 SACTALKNLELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVI 411

Query: 285 ----------------------------DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
                                       DVV W AMI  Y Q    ++A+ LF  M+   
Sbjct: 412 CWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQR 471

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V PDK T++ +L+ CA +GAL+ GKW+  Y  +  +  D+            CG +D +L
Sbjct: 472 VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSL 531

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           ++F ++   +  SW ++I  LA NG+  EAL LF  M + G  A+P+D+TFIGVLSAC H
Sbjct: 532 EIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVG--AKPDDITFIGVLSACSH 589

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL- 484
            GLV+EGRR F+ M     + PK EHY C++DL  RAG L EA + ++ +P +  EIV+ 
Sbjct: 590 GGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVP 649

Query: 485 --GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
             GALL AC+   N D+ +R+ + L  IES +S  + + + I+A++  W+D+ K+R  M+
Sbjct: 650 LYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMK 709

Query: 543 EKGVSKTPGCSWIGID 558
           E GV K PGCS I +D
Sbjct: 710 ELGVKKMPGCSLIEVD 725


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 329/578 (56%), Gaps = 51/578 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           L+ LL        ++QI   ++I ++      + R+++     YA  +F QI  P++   
Sbjct: 5   LIDLLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVH 64

Query: 87  NVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
              I    TA+ + S    +L+ +  M +  ++   FT P +F SCA+LLA++ G  VHS
Sbjct: 65  CSFI----TAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHS 120

Query: 144 SVFKIG-------------------------------LDEDDHVSHSLITMYARCGKLDS 172
            V + G                               L +D    + LI+ Y+R G++ +
Sbjct: 121 LVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLA 180

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR++FD++R+R +VSWN+MIS Y++ G   +   +F RM++E   P+EITL +VL  C  
Sbjct: 181 ARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAK 240

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           LGDL +G  ++       +  N  + +A+++MY KCGA+   R VFD M  +DVVTW+AM
Sbjct: 241 LGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAM 300

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YAQNG SNEA+ LF  MK A + P+ +TL+ VLSACA +G+++ G+ +  Y   RGL
Sbjct: 301 IAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGL 360

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +++           CG+I  A ++F+ +P  + V+WN+MI  LA NG A +A+ L+ R
Sbjct: 361 ISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNR 420

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M +     +PN++TF+G+++AC HAG V+ G   F  M S   + P  EH++C+VDL+ R
Sbjct: 421 MKEI--EVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCR 478

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           +G L +A++F+ RM  + + ++ G LL A +   N ++++   + LLE+E  NSGNYVI 
Sbjct: 479 SGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVIL 538

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S I+A+   W ++ K+R LM++K V K    SW+ ++D
Sbjct: 539 SNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVED 576


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/567 (36%), Positives = 308/567 (54%), Gaps = 55/567 (9%)

Query: 44  HTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           H QM+   +   N+ L ++++L           YA  +F     PN   +N M+RGL ++
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
               S  L++Y +M   G  P+ +T+PF+  SCA       G  +H+ V K+G + D + 
Sbjct: 62  SDLVS-PLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 157 SHSLITMYARCGKLDSA-------------------------------RKVFDEIRERDL 185
             SLI+MYAR G+L+ A                               RKVFD I ERD+
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWN+MI+GY +    +EA+ELF  M      PDE TLVSVL +C   G + LG+ +   
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 246 VVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           V  +     +  + +A I +Y KCG +  A  +F+ +  KDVV+WN +I  Y    L  E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--------GLRHDI 356
           A++LF  M  +G +P+ +T++ VL ACA +GA+D+G+W+  Y  +R         LR  +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 357 F-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG I+ A +VF  M   +  SWNAMI   A +GRA+ A  LF RM K G    P
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNG--IEP 418

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           +D+T +G+LSAC H+GL+D GR +F  ++  + + PK EHY CM+DL   AG   EA + 
Sbjct: 419 DDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEI 478

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +  MP + D ++  +LL AC+   N ++++   Q L+EIE  NSG+YV+ S I+A    W
Sbjct: 479 IHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRW 538

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGID 558
           +D A++R ++  KG+ K PGCS I ID
Sbjct: 539 EDVARIREVLNGKGMKKVPGCSSIEID 565


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/545 (36%), Positives = 317/545 (58%), Gaps = 31/545 (5%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEY 84
           +LLK C +T T++Q+H +++   + + +F++ + +     L +F+Y + +F+ +S P+  
Sbjct: 30  TLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTV 89

Query: 85  AFNVMIRGLTTAWQKYSHSL--KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            +N  I+G +   + YS SL   L+ +MKR    PD FTYP +  +C+ +  +  GV+ H
Sbjct: 90  LWNTYIKGYS---ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 146

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
            S  + G+  D  V  SLI +Y +CG++  ARKVFDE+ ER++VSW +MI+GY+      
Sbjct: 147 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 206

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA +LF  M E+  +     ++S    CGDL      K  +    +N +       + +I
Sbjct: 207 EARKLFDEMPEKNAVSWN-AIISGYVKCGDLRSA--RKMFDEMPHRNVVSF-----TTMI 258

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y K G +  AR VF+    +DVV W+A+I+ Y QNG  NEA+ +F  M    V PD+ 
Sbjct: 259 DGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEF 318

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGL---RHDIF---------CGSIDDALKVFED 370
            ++ ++SAC+ +G+L+L KWVD Y  +  +   R  +          CGS+D A K+FE+
Sbjct: 319 IMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEE 378

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  + +S+ +M+  L+ +G   +A+ LF RM  EG    P+DV F  +L+AC  AGLVD
Sbjct: 379 MPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEG--LTPDDVAFTVILTACSRAGLVD 436

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F+ M + + ++P  +HY+CMVDL  RAG L EA++ ++ MP +      GALLGA
Sbjct: 437 EGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGA 496

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   + ++ + V   L E+E  N+GNYV+ S I+A  + W D + +R  MRE+G+ K P
Sbjct: 497 CKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIP 556

Query: 551 GCSWI 555
           GCSWI
Sbjct: 557 GCSWI 561


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 312/552 (56%), Gaps = 28/552 (5%)

Query: 31  LKKCPSTKTVQQIH-------TQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNE 83
           L  C S   ++QIH       +  L N I K  FL        D  Y   +    S   +
Sbjct: 13  LNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 72

Query: 84  YAF---NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           +     N +IR ++      S  ++   +M  +GL+PD FT P V  + A +  +  G  
Sbjct: 73  FCLSLCNAIIRSISRNSINLS-PMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQ 131

Query: 141 VHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +H+   K G+   + +VS++L+ +Y+ CG +   +KVFDE   RDLVSW ++I  ++K G
Sbjct: 132 IHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAG 191

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYM 257
               AVE F  M +     D  TLV VL +C +LGDL LG+ V  ++ ++ +D+  + ++
Sbjct: 192 LYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYI-RHYIDMKADVFV 250

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+DMY KC  L  A +VFD M  K+VVTWNAMI+  A  G   EA+  F  M+  GV
Sbjct: 251 GNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGV 310

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PD++TL+GVL++CA++G L++GKWV  Y  +  +  D F           CGSID+A +
Sbjct: 311 KPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFR 370

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VFE M   +  S+ AMI  LA +G A+ A  +F  M + G    PN+VTF+G+L AC H 
Sbjct: 371 VFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVG--IEPNEVTFLGLLMACSHG 428

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV EG++ F  MS  + L P++EHY CM+DL  RAG + EA + + +M  + D    GA
Sbjct: 429 GLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGA 488

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC+   N D+ + VMQ L E++    G Y++ + +++++  W D+ K+R  M+ K +
Sbjct: 489 LLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKM 548

Query: 547 SKTPGCSWIGID 558
            KTPGCS I +D
Sbjct: 549 RKTPGCSLIEVD 560


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 315/549 (57%), Gaps = 18/549 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL----LIRIIDLKDFNYASLLFHQISR 80
           +++ +L+    +   ++QIH  ++ + +    FL    L R +  +   Y+ LLF     
Sbjct: 14  QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQF 73

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN + +N +I G       +  +L L+  +++ GL    FT+P V  +C    +   G+ 
Sbjct: 74  PNIFLYNSLINGFVNN-HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +HS V K G + D     SL+++Y+  G+L+ A K+FDEI +R +V+W ++ SGY+  G 
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +EA++LF +M E    PD   +V VL +C  +GDL  G+W+  ++ + +M  N ++ + 
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+++Y KCG +  AR VFD+MV KD+VTW+ MI  YA N    E I LF +M    + PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
           + +++G LS+CAS+GALDLG+W      +     ++F           CG++    +VF+
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           +M   + V  NA IS LA NG    +  +F +  K G    P+  TF+G+L  CVHAGL+
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG--ISPDGSTFLGLLCGCVHAGLI 430

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            +G R F+ +S  + L    EHY CMVDL+ RAG L +A+  +  MP + + IV GALL 
Sbjct: 431 QDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C+  K+T +++ V++ L+ +E  N+GNYV  S I++    WD++A++R +M +KG+ K 
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKI 550

Query: 550 PGCSWIGID 558
           PG SWI ++
Sbjct: 551 PGYSWIELE 559


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 316/550 (57%), Gaps = 18/550 (3%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID--LKDFNYASLLFHQISR 80
           LR  +L    KC +   + Q  + ++ + +    F L  ++    KD  Y  LLF +++ 
Sbjct: 7   LRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATKDLGYTLLLFDRLAT 66

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P  + +N ++R  + + Q     L  Y +++  G+ PD  T+P +  + + L   N    
Sbjct: 67  PYIFLWNTIVRSFSASSQP-QMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQ 124

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            ++ + K GLD D  V +SL++ +A CG +D +R++F E  ++D+VSW ++I+G  + G 
Sbjct: 125 FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGR 184

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGS 259
           A EA+E F  MR      DE+T+VSVL +   L D+  G+WV GF V++ ++  + Y+GS
Sbjct: 185 AVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGS 244

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY KCG    A +VF+ M  +++V+W A+I  Y Q     EA+ +F  M   G+ P
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYA--SQRGLRH-------DIF--CGSIDDALKVF 368
           ++ T+   L+ACA +G+LD G+W+ +Y   S+ GL         D++  CG +D+AL VF
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVF 364

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E +P  +   W AMI+ LA  G A  +L LF +M +     +PN VTF+GVLSAC H GL
Sbjct: 365 EKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRS--RVQPNGVTFLGVLSACAHGGL 422

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VDEG  LF LM   + L P  +HY CMVDL  RAG L EA  F+E MP +    V GAL 
Sbjct: 423 VDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALF 482

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
             C   K  ++ + +   L++++  +SG Y++ + +++  + W+ +A +R LM+ KGV K
Sbjct: 483 SGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDK 542

Query: 549 TPGCSWIGID 558
           +P CSWI ++
Sbjct: 543 SPACSWIEVN 552


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 314/550 (57%), Gaps = 19/550 (3%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEY 84
           SL+      + + QIH +++I+ +Q   FL+ ++++    L    YA  LF +   P+ +
Sbjct: 61  SLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVF 120

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +IR  +     Y  ++++Y  M+  G+ PD FT+P+V  +C  LL       +H  
Sbjct: 121 MWNAIIRSYSRN-NMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQ 179

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + K G   D  V + L+ +YA+CG +  A+ VFD +  R +VSW S+ISGY++ G A EA
Sbjct: 180 IIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEA 239

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + +F +MR     PD I LVS+L +  D+ DL  G+ + GFV+K  ++    +  +L   
Sbjct: 240 LRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF 299

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG +  A+  FD M   +V+ WNAMI+ YA+NG + EA+ LF+ M    + PD +T+
Sbjct: 300 YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTV 359

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
              + A A +G+L+L +W+D Y S+     DIF           CGS++ A +VF+    
Sbjct: 360 RSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSD 419

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + V W+AMI     +G+  EA+ L+  M + G    PNDVTFIG+L+AC H+GLV EG 
Sbjct: 420 KDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAG--VFPNDVTFIGLLTACNHSGLVKEGW 477

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            LF  M   F ++P++EHYSC+VDL  RAG+L EA  F+ ++P +    V GALL AC+ 
Sbjct: 478 ELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKI 536

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
            +   + +     L  ++  N+G+YV  S ++A+  +WD  A +R LMREKG++K  G S
Sbjct: 537 YRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYS 596

Query: 554 WIGIDDPKQS 563
            I I+   Q+
Sbjct: 597 VIEINGKLQA 606


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/591 (35%), Positives = 324/591 (54%), Gaps = 58/591 (9%)

Query: 17  LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFNY 70
           + +P+LL      +++ C + + ++QI  +M +  I    F + R+I         D +Y
Sbjct: 156 ITNPTLL------IMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHY 209

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F+++ +PN + +N MIRG   A +K   +   +  M +L ++ D+ ++ F   +C 
Sbjct: 210 AHTIFNRVEQPNTFMWNTMIRGYQNA-RKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQ 268

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               +  G SV+  V+K+G D +  V + LI  YA  G L +AR+VFDE  ++D+V+W +
Sbjct: 269 QFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTT 328

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY+    ++EA+E+F  M      P+E+TL++V+ +C D+G+L +GK V   V +  
Sbjct: 329 MIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKN 388

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV------------------------ 286
           M  +  + +AL+DMY KC  LV AR +FD M  KDV                        
Sbjct: 389 MRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFD 448

Query: 287 -------VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
                  V W+AMI  Y+QN    E++ LF+ M   GV P + TL+ VLSAC  +  L+L
Sbjct: 449 QTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNL 508

Query: 340 GKWVDKY----------ASQRGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           G W+ +Y           +      D++  CGSID A +VF  MP  N +SWN MI+  A
Sbjct: 509 GDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYA 568

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            NGRA +A+ +F++M   G    PN++TF+ +L+AC H GL+ EGR  FD M   +G+ P
Sbjct: 569 ANGRAKQAINVFDQMRNMG--FEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKP 626

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           +  HY+CMVDL  R G L EA+  +  MP +  E   GALL AC+   N ++++     L
Sbjct: 627 ERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNL 686

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L ++  +SG YV+ +   AN + W D  ++R+LM++KGV K PG S I ID
Sbjct: 687 LRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEID 737


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 319/582 (54%), Gaps = 55/582 (9%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL---------KDFNYASLLFHQISR 80
           LL  C + + V+QIH Q+L + +   N LL++++              +YA  LF  I  
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P     N ++R  +       ++L LY  ++R G   D F++P +  + + L ALN G+ 
Sbjct: 78  PPTRFSNQLLRQFSRGPTP-ENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLE 136

Query: 141 VHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +H    K G    D  +  +LI MYA CG++  AR +FD++  RD+V+WN MI GYS+  
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +    ++L+  M+     PD I L +VL +C   G+L  GK +  F+  N   +  ++ +
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQT 256

Query: 260 ALIDMYGKCGAL---------VP----------------------ARRVFDAMVNKDVVT 288
           +L++MY  CGA+         +P                      AR +FD MV KD+V 
Sbjct: 257 SLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVC 316

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           W+AMI+ YA++    EA+ LFN M+   + PD+IT++ V+SACA++GAL   KW+  YA 
Sbjct: 317 WSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYAD 376

Query: 349 QRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + G            D++  CG++  A +VFE+MP  N +SW++MI+A A +G A  A+ 
Sbjct: 377 KNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIA 436

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF RM ++     PN VTFIGVL AC HAGLV+EG++ F  M +   + P+ EHY CMVD
Sbjct: 437 LFHRMKEQN--IEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVD 494

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           LY RA HL +A + +E MP   + I+ G+L+ ACQ     ++ +     LLE+E  + G 
Sbjct: 495 LYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGA 554

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            V+ S I+A  K WDD   +R LM+ KGVSK   CS I +++
Sbjct: 555 LVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNN 596


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/551 (36%), Positives = 323/551 (58%), Gaps = 26/551 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFNYASLLFHQISR 80
           +LSLL+KC +   ++++H  M+   + +    L R++D        + NYA  +F+QI R
Sbjct: 8   ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ Y +N MI+G + + +    +L +Y +M++ G  PD+FT+PFV  +C+ +   N G  
Sbjct: 68  PSLYIWNSMIKGYSIS-ESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQC 126

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ + K G + D + + +L+ MYA CG +++A KVFD+I + ++V+W S+I+G      
Sbjct: 127 VHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD-------L 253
             EAV ++  M      P+EIT+V+VL +C    DL  G+WV     +  +D        
Sbjct: 187 PSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNF 246

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMY KCG+L  AR +F+ M ++++V WN+MI AY Q G +NEA+ LF+ M+
Sbjct: 247 NVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMR 306

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI-----------D 362
            AG +PDK T + V+ ACA +GAL  G+ +  Y S+  L  D   G+            +
Sbjct: 307 IAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAE 366

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A +VF ++   +  +W ++I  LA +G   EAL  F++M +E  A  P+++T+IGVLSA
Sbjct: 367 RAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKM-QEDTALIPDEITYIGVLSA 425

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H G V++G+  F  M +  G+ P ++HY CMVDL +RAG L EA   VE+MP + +  
Sbjct: 426 CSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTA 485

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +  ALL  C+  +N DV+ RV + + E+E   SG YV+ S I+A    W++    R LM+
Sbjct: 486 IWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMK 545

Query: 543 EKGVSKTPGCS 553
           E+ + K+ G S
Sbjct: 546 ERKIQKSLGHS 556


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/536 (38%), Positives = 306/536 (57%), Gaps = 46/536 (8%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A+ LF QI RP    +N+MIRG +   Q    +++ Y  M    L  +N TYPF+  +CA
Sbjct: 749  ANELFRQIPRPTLSHWNIMIRGWSQTNQPI-EAIRNYNLMYSQALFGNNLTYPFLLKACA 807

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
             +  ++   +VH+ V K+G D D  VS++LI  YA   +L  ARKVFDE+ ERDLVSWNS
Sbjct: 808  RISNVS-CTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNS 866

Query: 191  MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
            +I GY +     E + +F  MR  +   D +T+V V+ +C  LG+  +   +  ++ +NK
Sbjct: 867  LICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENK 926

Query: 251  MDLNFYMGSALIDMYG-------------------------------KCGALVPARRVFD 279
            ++++ Y+G+ LIDMYG                               K G LV AR++FD
Sbjct: 927  VEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFD 986

Query: 280  AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
             M ++DV++W +MI++Y+Q G   +A+ LF  M    V PD+IT+  VLSACA IGALD+
Sbjct: 987  DMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDV 1046

Query: 340  GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
            G+ V +Y  +  +  DI+           CG+++  L VFE+M   + VSW ++I+ LA 
Sbjct: 1047 GEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAV 1106

Query: 389  NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
            NG A  AL LF  M +EG   RP   TF+GVL AC HAG+VD+G   F+ M   +GL P+
Sbjct: 1107 NGSADSALNLFSLMLREG--VRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPE 1164

Query: 449  SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
             +HY C+VDL +R+G+L  A++F++RMP   D +V   LL A Q   N  +++   + LL
Sbjct: 1165 MKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLL 1224

Query: 509  EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQSN 564
            E + SNSGNY++SS  +A    W+D  KMR LM E  V K    S + I+D   S 
Sbjct: 1225 ETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEINDSDSSQ 1280



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 141/371 (38%), Gaps = 100/371 (26%)

Query: 271  LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
            ++ A  +F  +    +  WN MI  ++Q     EAI  +N M    +  + +T   +L A
Sbjct: 746  ILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKA 805

Query: 331  CASIG----------ALDLGKWVDKYASQRGLRHDI--FCGSIDDALKVFEDMPVTNEVS 378
            CA I            L LG   D + S   L H    FC  +  A KVF++M   + VS
Sbjct: 806  CARISNVSCTTVHARVLKLGFDSDLFVSN-ALIHGYAGFC-ELGFARKVFDEMSERDLVS 863

Query: 379  WNAMISALAFNGRAHEALLLFE--RMSKEGGAARPNDVTFIGVLSACVHAG--------- 427
            WN++I       R  E L++FE  RM+   G A    VT + V+ AC   G         
Sbjct: 864  WNSLICGYGRCRRYSEVLVVFEEMRMADVKGDA----VTMVKVVLACTVLGEWGVVDAMI 919

Query: 428  --------------------------LVDEGRRLFDLMSSS------------------- 442
                                      +VD  RR+FD M                      
Sbjct: 920  EYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLV 979

Query: 443  -----FGLIPKSE--HYSCMVDLYARAGHLSEAWD-FVERMPEKV--DEIVLGALLGACQ 492
                 F  +P  +   ++ M+  Y++AG   +A   F E M  KV  DEI + ++L AC 
Sbjct: 980  AARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACA 1039

Query: 493  KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS----- 547
                 DV + V + + +        Y +++ I+    + D   K  A+  EKG+S     
Sbjct: 1040 HIGALDVGEAVHEYIRK--------YDVNADIYVGNALIDMYCKCGAV--EKGLSVFEEM 1089

Query: 548  -KTPGCSWIGI 557
             K    SW  +
Sbjct: 1090 GKRDSVSWTSV 1100


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/503 (39%), Positives = 300/503 (59%), Gaps = 17/503 (3%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YA  +F QI   N + +N MIRG        S +L LY +M   G KPDNFTYPFV  +C
Sbjct: 76  YAQHIFDQIVLKNSFLWNSMIRGYACN-NSPSRALFLYLKMLHFGQKPDNFTYPFVLKAC 134

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
            +LL    G  VH+ V   GL+ED +V +S+++MY + G +++AR VFD +  RDL SWN
Sbjct: 135 GDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWN 194

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +M+SG+ K G A+ A E+FG MR + F+ D  TL+++L +CGD+ DL +GK + G+VV+N
Sbjct: 195 TMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRN 254

Query: 250 KMD---LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
                  N ++ +++IDMY  C ++  AR++F+ +  KDVV+WN++I+ Y + G + +A+
Sbjct: 255 GESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQAL 314

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF RM   G  PD++T+I VL+AC  I AL LG  V  Y  +RG   ++          
Sbjct: 315 ELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMY 374

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CGS+  A +VF++MP  N  +   M++    +GR  EA+ +F  M  +G    P++  
Sbjct: 375 ANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKG--VTPDEGI 432

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F  VLSAC H+GLVDEG+ +F  M+  + + P+  HYSC+VDL  RAG+L EA+  +E M
Sbjct: 433 FTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENM 492

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
             K +E V  ALL AC+  +N  ++    Q L E+       YV  S I+A  + W+D  
Sbjct: 493 KLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVE 552

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            +RAL+ ++ + K P  S++ ++
Sbjct: 553 NVRALVAKRRLRKPPSYSFVELN 575



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 191/365 (52%), Gaps = 21/365 (5%)

Query: 41  QQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +++H  +++  +++     N +L       D   A ++F ++   +  ++N M+ G    
Sbjct: 144 RKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKN 203

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE---D 153
            +    + +++  M+R G   D  T   +  +C +++ L  G  +H  V + G      +
Sbjct: 204 GEARG-AFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCN 262

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             + +S+I MY  C  +  ARK+F+ +R +D+VSWNS+ISGY K G A +A+ELFGRM  
Sbjct: 263 GFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVV 322

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
              +PDE+T++SVL +C  +  L LG  V+ +VVK    +N  +G+ALI MY  CG+LV 
Sbjct: 323 VGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVC 382

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A RVFD M  K++     M+T +  +G   EAI +F  M   GV PD+     VLSAC+ 
Sbjct: 383 ACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSH 442

Query: 334 IGALDLGKWV------DKYASQRGLRHDIF------CGSIDDALKVFEDMPV-TNEVSWN 380
            G +D GK +      D     R   +          G +D+A  V E+M +  NE  W 
Sbjct: 443 SGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWT 502

Query: 381 AMISA 385
           A++SA
Sbjct: 503 ALLSA 507



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 192/385 (49%), Gaps = 26/385 (6%)

Query: 116 KPDNFTYPFVFISCANLL-------ALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARC 167
           KP + T  F  + C  LL       +L   + +H+ V   G L  + +++  L   YA C
Sbjct: 13  KPSS-TSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVC 71

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G +  A+ +FD+I  ++   WNSMI GY+       A+ L+ +M      PD  T   VL
Sbjct: 72  GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVL 131

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CGDL    +G+ V   VV   ++ + Y+G++++ MY K G +  AR VFD M+ +D+ 
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT 191

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +WN M++ + +NG +  A  +F  M+  G   D+ TL+ +LSAC  +  L +GK +  Y 
Sbjct: 192 SWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251

Query: 348 SQRG---------LRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            + G         L + I      C S+  A K+FE + V + VSWN++IS     G A 
Sbjct: 252 VRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAF 311

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           +AL LF RM   G  A P++VT I VL+AC     +  G  +   +    G +      +
Sbjct: 312 QALELFGRMVVVG--AVPDEVTVISVLAACNQISALRLGATVQSYVVKR-GYVVNVVVGT 368

Query: 454 CMVDLYARAGHLSEAWDFVERMPEK 478
            ++ +YA  G L  A    + MPEK
Sbjct: 369 ALIGMYANCGSLVCACRVFDEMPEK 393


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 322/565 (56%), Gaps = 50/565 (8%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRI-----IDLKDFNYASLLFHQISRPNEYAFNVMIRG 92
           + ++++H   +++ +   ++ + ++     I   D  +A  +F QI  P  + +N++IRG
Sbjct: 2   EAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRG 61

Query: 93  LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
           L  +    + ++  Y + +  G+ PDN T+PF+  +CA + ALN G  +H+ + K+GL  
Sbjct: 62  LAQS-DAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 120

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           D  VS+SLI +YA CG L  AR VFDE+  +D+VSWNS+I GYS+    K+ + LF  M+
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL- 271
            E    D++T++ V+ +C  LGD  +  ++  ++    ++++ Y+G+ L+D +G+ G L 
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240

Query: 272 ------------------------------VPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
                                         V AR++FD +  KD+++W++MI+ Y+Q   
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
            ++A+ +F +M+ A V PD I +  V+S+CA +GALDLGKWV +Y  +  ++ D      
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 360

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CGS  +AL+VF++M   + +SWN++I  LA NG   E+L LF+ M  EG   R
Sbjct: 361 LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEG--FR 418

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTF+GVL AC +A LV+EG   F+ M   + L P+ +HY C+VDL  RAG L +A  
Sbjct: 419 PNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALR 478

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
           F+  MP   D +V   LLG+C    +  +++ V + L E+E SNSGNY + S  +A+   
Sbjct: 479 FITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHR 538

Query: 531 WDDSAKMRALMREKGVSKTPGCSWI 555
           W ++  +R  M +  V K+PGCS +
Sbjct: 539 WSEAMNVRQCMADTDVRKSPGCSAV 563


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 317/592 (53%), Gaps = 52/592 (8%)

Query: 14  FTELNDPSLLR-EKLLSLLKKCPSTKTVQQIHTQMLIN------FIQKPNFLLIRIIDLK 66
           F+ LN+  L R  ++LS + KC S+K ++++H +ML        F     F    +    
Sbjct: 14  FSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFS 73

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
             +YA  LF QI +PN Y +N +IR   ++   +   +     + +    P+ FT+PFV 
Sbjct: 74  TLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVI 133

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            + + L A   G +VH    K+    D ++ +SL+  Y  CG L  A ++F  I  +D+V
Sbjct: 134 KAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVV 193

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNSMIS +++    ++A+ELF +M  E  +P+ +T+V VL +C    DL  G+WV  ++
Sbjct: 194 SWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYI 253

Query: 247 VKNKMDLNFYMGSALIDMYGKCGAL---------VP----------------------AR 275
            +  + ++  + +A++DMY KCG++         +P                      AR
Sbjct: 254 ERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAAR 313

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASI 334
            VF+AM  K++  WN +I+AY QNG   EA+ +FN ++ + +  PD++TL+  LSACA +
Sbjct: 314 LVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQL 373

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
           GA+DLG W+  Y  + G+  +             CGS++ AL+VF  +   +   W+AMI
Sbjct: 374 GAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMI 433

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           + L  +GR   A+ LF  M +     +PN VTF  VL AC HAGLVDEGR  F  M   +
Sbjct: 434 AGLGMHGRGKAAIDLFFEMQE--AKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVY 491

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           G++P+ +HY+CMVD+  RAG L EA + +  M       V GALLGAC    N ++ +  
Sbjct: 492 GVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELA 551

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
              LL++E  N G  V+ S I+A    W+  +++R LMR+  + K PGCS I
Sbjct: 552 SDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSI 603


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/533 (37%), Positives = 300/533 (56%), Gaps = 47/533 (8%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YA  +F  I  PN   +N M RG   +    S +LKLY  M  LGL P+++T+PF+  SC
Sbjct: 15  YAISVFETIQEPNLLIWNTMFRGHALSPDPVS-ALKLYVCMISLGLLPNSYTFPFLLKSC 73

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY------------------------- 164
           A L A   G+ +H  V K+G + D +V  SLI+MY                         
Sbjct: 74  AKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYT 133

Query: 165 ------ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
                 A  G ++SAR +FDEI  +D+VSWN+MISGY + G  KEA+ELF  M +    P
Sbjct: 134 ALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRP 193

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           DE T+V+V+ +    G + LG+ V  ++  +    N  + +ALID Y KCG +  A  +F
Sbjct: 194 DESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLF 253

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             +  KDV++WN +I  Y    L  EA++LF  M  +G +P+ +T++ +L ACA +GA+D
Sbjct: 254 LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAID 313

Query: 339 LGKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           +G+W+  Y  +R         LR  +      CG I+ A +VF  M   +  +WNAMI  
Sbjct: 314 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFG 373

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +GRA+ A  +F RM K     +P+D+TF+G+LSAC HAG++D GR +F  M+ ++ +
Sbjct: 374 FAMHGRANAAFDIFSRMRK--NEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKI 431

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            PK EHY CM+DL   +G   EA + +  M  + D ++  +LL AC+   N ++ ++  Q
Sbjct: 432 TPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQ 491

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            L +IE +N G+YV+ S I+A    W++ A++R L+ +KG+ K PGCS I ID
Sbjct: 492 NLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEID 544



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 188/432 (43%), Gaps = 86/432 (19%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  A  VF+ I+E +L+ WN+M  G++       A++L+  M     LP+  T   +L S
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM------------------------- 264
           C  L     G  + G V+K   +L+ Y+ ++LI M                         
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 265 ------YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                 Y   G +  AR +FD +  KDVV+WNAMI+ Y + G   EA+ LF  M    V 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKV 367
           PD+ T++ V+SA A  G+++LG+ V  + +  G   ++            CG ++ A  +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  +   + +SWN +I          EALLLF+ M + G +  PNDVT + +L AC H G
Sbjct: 253 FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES--PNDVTMLSILHACAHLG 310

Query: 428 LVDEGRRLFDLMSSSF-GLIPKSEHYSCMVDLYARAGHL--------------------- 465
            +D GR +   +     G+   S   + ++D+Y++ G +                     
Sbjct: 311 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAM 370

Query: 466 ----------SEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
                     + A+D   RM +   K D+I    LL AC      D+ + + +       
Sbjct: 371 IFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFR------- 423

Query: 513 SNSGNYVISSKI 524
           S + NY I+ K+
Sbjct: 424 SMTHNYKITPKL 435


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 299/537 (55%), Gaps = 51/537 (9%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YA  +F  I  PN+  +N+M RG   +    S +LKLY  M  LGL P+ FT+PF+  SC
Sbjct: 27  YAISVFETIPEPNQLIWNIMFRGHALSSDPVS-ALKLYVVMISLGLLPNFFTFPFLLKSC 85

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD------------------ 171
           A       G  +H  V K+G D D +V  SLI+MYA+ G+L+                  
Sbjct: 86  AKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYT 145

Query: 172 -------------SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
                        SA+K+FDEI  +D+VSWN+MISGY++ G  K+A+ELF  M +    P
Sbjct: 146 ALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKP 205

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           DE T+ +V+ +C   G + LG+ V  ++  +    N  + +ALID+Y KCG +  A  + 
Sbjct: 206 DESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELL 265

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           + + NKDV++WN +I  Y    L  EA++LF  M  +G  P+ +T++ +L ACA +GA+D
Sbjct: 266 EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 339 LGKWVDKYASQR----------GLRHDIF-----CGSIDDALKVFEDMPVTNEVS-WNAM 382
           +G+W+  Y  ++           LR  +      CG ID A +V +       +S WNAM
Sbjct: 326 IGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I   A +GRA+ A  +F RM K G    P+D+TF+G+LSAC H+G++D GR +F  M   
Sbjct: 386 IFGFAMHGRANAAFDIFSRMRKNG--IEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQD 443

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           + + PK EHY CM+DL   +G   EA + +  MP + D ++  +LL AC+   N ++ + 
Sbjct: 444 YNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGES 503

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV-SKTPGCSWIGID 558
             + L++IE  N G+YV+ S I+A    W++  K+R L+ +KG+  K PGCS I ID
Sbjct: 504 FAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEID 560



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 161/344 (46%), Gaps = 47/344 (13%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  A  VF+ I E + + WN M  G++       A++L+  M     LP+  T   +L S
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C        G+ + G V+K   DL+ Y+ ++LI MY + G L  A++VFD   ++DVV++
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 290 -------------------------------NAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                                          NAMI+ YA+ G   +A+ LF  M    V 
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKV 367
           PD+ T+  V+SACA  G+++LG+ V  + +  G            D++  CG ++ A ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
            E +   + +SWN +I          EALLLF+ M + G    PNDVT + +L AC H G
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG--ETPNDVTMLSILPACAHLG 322

Query: 428 LVDEGRRL---FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +D GR +    D       +   S   + ++D+YA+ G +  A
Sbjct: 323 AIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA 366


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/561 (37%), Positives = 310/561 (55%), Gaps = 23/561 (4%)

Query: 16  ELNDPSLLREKLLSLLKKCPST---KTVQQIHTQML-INFIQK---PNFLLIRIIDLKDF 68
           E  +PS++    L +L  C S    K  ++ H Q++ + F+        L+   +     
Sbjct: 156 EAMEPSII--TFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSM 213

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           + A  +F  + + +   FNVMI G   +      + +L+Y+M++ G KP+  ++  +   
Sbjct: 214 DGARQVFDGLYKRDVSTFNVMIGGYAKSGDG-EKAFQLFYRMQQEGFKPNRISFLSILDG 272

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C+   AL  G +VH+     GL +D  V+ +LI MY  CG ++ AR+VFD+++ RD+VSW
Sbjct: 273 CSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSW 332

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
             MI GY++    ++A  LF  M+EE   PD IT + ++ +C    DL L + +   VV+
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
                +  + +AL+ MY KCGA+  AR+VFDAM  +DVV+W+AMI AY +NG   EA   
Sbjct: 393 AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFET 452

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F+ MK   V PD +T I +L+AC  +GALDLG  +   A +  L   I            
Sbjct: 453 FHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVK 512

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            GSI+ A  +FE+M   + V+WN MI   + +G A EAL LF+RM KE    RPN VTF+
Sbjct: 513 HGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKE--RFRPNSVTFV 570

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVLSAC  AG V+EGRR F  +    G++P  E Y CMVDL  RAG L EA   + RMP 
Sbjct: 571 GVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPL 630

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           K +  +   LL AC+   N DV++R  +  L  E  +   YV  S ++A   MW++ AK+
Sbjct: 631 KPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKV 690

Query: 538 RALMREKGVSKTPGCSWIGID 558
           R +M  +GV K  GC+WI ++
Sbjct: 691 RKVMESRGVRKEQGCTWIEVE 711



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/483 (30%), Positives = 234/483 (48%), Gaps = 47/483 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A   F  +       +N +I G          +  L+ QM    ++P   T+  V  +C+
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGH-VKEAFALFRQMVDEAMEPSIITFLIVLDACS 173

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +   L  G   H+ V K+G   D  +  +L++MY + G +D AR+VFD + +RD+ ++N 
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY+K G  ++A +LF RM++E F P+ I+ +S+L  C     L  GK V    +   
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  +  + +ALI MY  CG++  ARRVFD M  +DVV+W  MI  YA+N    +A  LF 
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+  G+ PD+IT I +++ACAS   L L + +     + G   D+            CG
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCG 413

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +I DA +VF+ M   + VSW+AMI A   NG   EA   F  M +      P+ VT+I +
Sbjct: 414 AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNN--VEPDVVTYINL 471

Query: 420 LSACVHAGLVDEGRRLF------DL------------MSSSFGLIPKSEH---------- 451
           L+AC H G +D G  ++      DL            M+   G I ++ +          
Sbjct: 472 LNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDV 531

Query: 452 --YSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQL 506
             ++ M+  Y+  G+  EA D  +RM +   + + +    +L AC +    +  +R    
Sbjct: 532 VTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSY 591

Query: 507 LLE 509
           LL+
Sbjct: 592 LLD 594



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 205/385 (53%), Gaps = 17/385 (4%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D+ TY  +F  C  L     G  V   + + G   + +  ++LI +++ CG +  AR+ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D +  + +V+WN++I+GY+++G+ KEA  LF +M +E   P  IT + VL +C     L 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LGK     V+K     +F +G+AL+ MY K G++  AR+VFD +  +DV T+N MI  YA
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           ++G   +A  LF RM+  G  P++I+ + +L  C++  AL  GK V       GL  D+ 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CGSI+ A +VF+ M V + VSW  MI   A N    +A  LF  M +EG
Sbjct: 300 VATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
              +P+ +T+I +++AC  +  +   R +   ++ + FG     +  + +V +YA+ G +
Sbjct: 360 --IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVD--TALVHMYAKCGAI 415

Query: 466 SEAWDFVERMPEKVDEIVLGALLGA 490
            +A    + M  + D +   A++GA
Sbjct: 416 KDARQVFDAMSRR-DVVSWSAMIGA 439



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 157/349 (44%), Gaps = 56/349 (16%)

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A ++  R+ E     D  T V +   C  L D  LGK V   ++++   LN Y  + LI 
Sbjct: 45  ANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIK 104

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           ++  CG ++ AR+ FD++ NK VVTWNA+I  YAQ G   EA  LF +M    + P  IT
Sbjct: 105 LHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIIT 164

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMP 372
            + VL AC+S   L LGK       + G   D           +  GS+D A +VF+ + 
Sbjct: 165 FLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLY 224

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC--------- 423
             +  ++N MI   A +G   +A  LF RM +EG   +PN ++F+ +L  C         
Sbjct: 225 KRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG--FKPNRISFLSILDGCSTPEALAWG 282

Query: 424 --VHA-----GLVDE-------------------GRRLFDLMSSSFGLIPKSEHYSCMVD 457
             VHA     GLVD+                    RR+FD M      +     ++ M+ 
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMK-----VRDVVSWTVMIR 337

Query: 458 LYARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRV 503
            YA   ++ +A+     M E   + D I    ++ AC    +  +++ +
Sbjct: 338 GYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREI 386


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 207/587 (35%), Positives = 321/587 (54%), Gaps = 56/587 (9%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQ 77
           ++  +  L+ C S   ++QI +Q+    ++     + +++       L +  YA  +F+ 
Sbjct: 97  KKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNY 156

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +  P+ + +NVM++ +          L L+ Q++  GL PD FTYPFV  +   L  +  
Sbjct: 157 VQDPSLFVYNVMVK-IYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQ 215

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  V   + K G+D D++V +SLI MY     +++A+K+FDE+  RD VSWN MISGY +
Sbjct: 216 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275

Query: 198 MGYAKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
               ++A+  F  M++E    PDE T+VS L +C  L +L LG  +  +V K ++     
Sbjct: 276 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTR 334

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNK-------------------------------D 285
           + +AL+DMY KCG L  AR +FD M  K                               D
Sbjct: 335 IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRD 394

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           VV W AMI  Y Q    ++A+ LF  M+   + PDK T++ +L+ CA +GAL+ GKW+  
Sbjct: 395 VVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHG 454

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
           Y  +  +  D+            CG +D +L++F ++   +  SW ++I  LA NG+  E
Sbjct: 455 YLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSE 514

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           AL LF  M + G  A+P+D+TFIGVLSAC H GLV+EGRR F+ M     + PK EHY C
Sbjct: 515 ALRLFSEMERVG--AKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGC 572

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVL---GALLGACQKQKNTDVSQRVMQLLLEIE 511
           ++DL  RAG L EA + ++ +P +  EIV+   GALL AC+   N D+ +R+ + L  IE
Sbjct: 573 VIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIE 632

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S +S  + + + I+A++  W+D+ K+R  M+E GV K PGCS I +D
Sbjct: 633 SCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVD 679



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 123/267 (46%), Gaps = 2/267 (0%)

Query: 16  ELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLF 75
           EL   + +   LL +  KC      + I  +M +  +     ++   I+  D   A  LF
Sbjct: 328 ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLF 387

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
            +    +   +  MI G    +  +  ++ L+ +M+   +KPD FT   +   CA L AL
Sbjct: 388 DKSPVRDVVLWTAMINGYVQ-FHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGAL 446

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H  + +  +  D  V  +LI MY++CG +D + ++F E+ ++D  SW S+I G 
Sbjct: 447 EQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGL 506

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLN 254
           +  G   EA+ LF  M      PD+IT + VL +C   G +  G+     + K ++++  
Sbjct: 507 AMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPK 566

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAM 281
                 +ID+ G+ G L  A  +   +
Sbjct: 567 VEHYGCVIDLLGRAGLLDEAEELIQEI 593


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 322/565 (56%), Gaps = 50/565 (8%)

Query: 38   KTVQQIHTQMLINFIQKPNFLLIRI-----IDLKDFNYASLLFHQISRPNEYAFNVMIRG 92
            + ++++H   +++ +   ++ + ++     I   D  +A  +F QI  P  + +N++IRG
Sbjct: 467  EAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRG 526

Query: 93   LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
            L  +    + ++  Y + +  G+ PDN T+PF+  +CA + ALN G  +H+ + K+GL  
Sbjct: 527  LAQS-DAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 585

Query: 153  DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
            D  VS+SLI +YA CG L  AR VFDE+  +D+VSWNS+I GYS+    K+ + LF  M+
Sbjct: 586  DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645

Query: 213  EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL- 271
             E    D++T++ V+ +C  LGD  +  ++  ++    ++++ Y+G+ L+D +G+ G L 
Sbjct: 646  NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705

Query: 272  ------------------------------VPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
                                          V AR++FD +  KD+++W++MI+ Y+Q   
Sbjct: 706  SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765

Query: 302  SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
             ++A+ +F +M+ A V PD I +  V+S+CA +GALDLGKWV +Y  +  ++ D      
Sbjct: 766  FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 825

Query: 358  -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                   CGS  +AL+VF++M   + +SWN++I  LA NG   E+L LF+ M  EG   R
Sbjct: 826  LIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEG--FR 883

Query: 411  PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
            PN VTF+GVL AC +A LV+EG   F+ M   + L P+ +HY C+VDL  RAG L +A  
Sbjct: 884  PNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALR 943

Query: 471  FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            F+  MP   D +V   LLG+C    +  +++ V + L E+E SNSGNY + S  +A+   
Sbjct: 944  FITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHR 1003

Query: 531  WDDSAKMRALMREKGVSKTPGCSWI 555
            W ++  +R  M +  V K+PGCS +
Sbjct: 1004 WSEAMNVRQCMADTDVRKSPGCSAV 1028



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 207/420 (49%), Gaps = 50/420 (11%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A +VFD    R    W++++  YS   + ++A++LF   R      D       L +C  
Sbjct: 47  AHQVFD----RRPTPWHALLKAYSHGPHPQDALQLFRHARWHA-ADDTYAFTFALKACAG 101

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           LG       + G VV+   +   Y+ +AL+++Y  CG L  +R  F+ M  K+ V+WN +
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVV 161

Query: 293 ITAYAQNGLSN-------------------------------EAIMLFNRMKYAGVNPDK 321
           IT +A  G                                  EA+ LF RM   G++P +
Sbjct: 162 ITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSE 221

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG-----------SIDDALKVFED 370
           IT++ V+ A +++G + +G+ +  Y  + GL  D+  G           SI ++L+VF++
Sbjct: 222 ITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDE 281

Query: 371 M-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           M    N VSW ++IS  A +G + +A+ LF  M + G   RPN +TF+ VL AC H GLV
Sbjct: 282 MLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAG--IRPNRITFLSVLHACSHGGLV 339

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           ++G   F  M   + + P  +H+ C++D+  RAG L EA   +   P +V+  V   LLG
Sbjct: 340 EQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLG 399

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C K    ++ +R M+ +L +E    G++V+ S +   L+ + D+  +R L+ ++   K+
Sbjct: 400 CCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKS 459



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 191/388 (49%), Gaps = 63/388 (16%)

Query: 70  YASLLFHQI--SRPNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPF 124
           ++ L+ HQ+   RP  +        L  A+    H   +L+L+ +  R     D + + F
Sbjct: 42  HSQLIAHQVFDRRPTPW------HALLKAYSHGPHPQDALQLF-RHARWHAADDTYAFTF 94

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
              +CA L      + +H  V + G +   +V  +L+ +Y  CG L  +R  F+E+  ++
Sbjct: 95  ALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKN 154

Query: 185 LVSWNSMISGYSKMG---YAK----------------------------EAVELFGRMRE 213
            VSWN +I+G++  G   YA+                            EAV LF RM  
Sbjct: 155 AVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMA 214

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
           E   P EIT+++V+ +  ++G +++G+ + G+  K  +  +  +G++LID+Y K G++  
Sbjct: 215 EGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQN 274

Query: 274 ARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
           + RVFD M++ +++V+W ++I+ +A +GLS +A+ LF  M+ AG+ P++IT + VL AC+
Sbjct: 275 SLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACS 334

Query: 333 SIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPV-TNEVSW 379
             G ++ G       + +Y     ++H     D+    G + +A ++  D PV  N   W
Sbjct: 335 HGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVW 394

Query: 380 NAMISALAFNG------RAHEALLLFER 401
             ++   +  G      R  + +L  ER
Sbjct: 395 RTLLGCCSKYGEVEMGERTMKKILALER 422



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 210/455 (46%), Gaps = 51/455 (11%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           +  YA LLF ++   N  +++ MI G T A +    ++ L+ +M   G+ P   T   V 
Sbjct: 170 EVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVE-AVALFRRMMAEGISPSEITVLAVV 228

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDL 185
            + +N+  +  G ++H    K GL  D  V +SLI +YA+ G + ++ +VFDE+ + R+L
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEG 244
           VSW S+ISG++  G + +AVELF  MR     P+ IT +SVL +C   G +  G  + + 
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKS 348

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNG--- 300
            + +  ++ +      +IDM G+ G L  A ++  D  V  +   W  ++   ++ G   
Sbjct: 349 MIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVE 408

Query: 301 ---LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL-GKWVDK----------- 345
               + + I+   R ++ G   D + L  +L+        ++  K VD+           
Sbjct: 409 MGERTMKKILALER-EFGG---DFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIV 464

Query: 346 ---------------------YASQRGLR-HDIFCGSIDDALKVFEDMPVTNEVSWNAMI 383
                                YA  + LR + I    +  A KVF+ +       WN +I
Sbjct: 465 RMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILI 524

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
             LA +    +A+  +++   +GG   P+++TF  +L AC     ++EG ++ + + +  
Sbjct: 525 RGLAQSDAPADAIAFYKK--AQGGGMVPDNLTFPFILKACARINALNEGEQMHNHI-TKL 581

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           GL+      + ++ LYA  G+L  A    + M  K
Sbjct: 582 GLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 616


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 204/550 (37%), Positives = 311/550 (56%), Gaps = 21/550 (3%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQK-----PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           LSLL+     ++  QI +  + + + +        L   +    DF ++  LF QI +PN
Sbjct: 32  LSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPN 91

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            +++N M R  + +    + ++ LY  M R G  PDN+++PFV  +CA L  L+ G  +H
Sbjct: 92  VFSWNFMFRAYSRS-SFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIH 150

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGY 200
           SS  K+G+  D  V ++LI+ ++ CG +++AR VFD +    RD+VSWNSMISGY +   
Sbjct: 151 SSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHR 210

Query: 201 AKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            + A+++F  +  +  L PDE+TLVS L  CG LG L LGK + G    +   L+ ++GS
Sbjct: 211 YELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGS 270

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +LIDMY KCG +  AR+VFD + +++ V W +MI  YAQ+ L  EAI LF  M+  G   
Sbjct: 271 SLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAA 330

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D  T+  VLSAC   GAL  G+W+  Y  +  +  D+            CG I  AL++F
Sbjct: 331 DAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIF 390

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             +   +  SW+A+IS LA NG + +AL LF +M       RPN++TF+GVL AC H G 
Sbjct: 391 HGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISD-IRPNEITFLGVLCACNHGGF 449

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VD+G   F+ M+  + L P  EHY CMVDL  RA  L EA  F+  +P + D ++  +LL
Sbjct: 450 VDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLL 509

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+   N ++++   + + E+E    G  V+ S ++A+   W D  ++R  M  + + K
Sbjct: 510 FACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKK 569

Query: 549 TPGCSWIGID 558
            PGCS++ ID
Sbjct: 570 QPGCSFVEID 579


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/549 (34%), Positives = 311/549 (56%), Gaps = 18/549 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL----LIRIIDLKDFNYASLLFHQISR 80
           +++ +L+    +   ++Q+H  ++ + +    FL    L R +  +  +Y+ LLF     
Sbjct: 14  QQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQF 73

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN + +N +I G       +  +L L+  +++ GL    FT+P V  +C        G+ 
Sbjct: 74  PNIFLYNTLINGFVNN-HLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGID 132

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +HS V K G + D     SL+++Y+  G+L+ A KVF+EI ER +V+W ++ SGY+  G 
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGK 192

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +EA++LF +M E    PD   +V VL +C  +GDL  G+W+   + + +M  N ++ + 
Sbjct: 193 HREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTT 252

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+++Y KCG +  AR VFD+M  KD+VTW+ MI  YA N    E I  F +M    + PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPD 312

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
           + +++G LS+CAS+GALDLG+W      +     ++F           CG++    +VF+
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           +M   + V  NA IS LA NG    +  +F +  K G    P+  TF+G+L  CVHAGL+
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG--ISPDGSTFLGLLCGCVHAGLI 430

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            +G R F+ +S  + L    EHY CMVDL+ RAG L +A+  +  MP + + IV GALL 
Sbjct: 431 QDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C+  K+T +++ V++ L+ +E  N+GNYV  S I++    WD++A++R +M  KG+ K 
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKI 550

Query: 550 PGCSWIGID 558
           PG SWI ++
Sbjct: 551 PGYSWIELE 559


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/585 (34%), Positives = 314/585 (53%), Gaps = 52/585 (8%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
            ++ +L+    KC S +  +Q+  +M    I   N ++  +  L   + A  LF  +   
Sbjct: 56  FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++  +N M+ G      +   +L  +  M + G   + +++  V  +C+ L  +N GV V
Sbjct: 116 DQCTWNSMVSGFAQH-DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV 174

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS + K     D ++  +L+ MY++CG ++ A++VFDE+ +R++VSWNS+I+ + + G A
Sbjct: 175 HSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPA 234

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSA 260
            EA+++F  M E    PDE+TL SV+ +C  L  + +G+ V G VVKN K+  +  + +A
Sbjct: 235 VEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNA 294

Query: 261 LIDMYGKCGALVPARRVFDAM-------------------------------VNKDVVTW 289
            +DMY KC  +  AR +FD+M                                 ++VV+W
Sbjct: 295 FVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSW 354

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           NA+I  Y QNG + EA+ LF  +K   V P   +   +L ACA +  L LG     +  +
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLK 414

Query: 350 RGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            G +       DIF           CG +++   VF  M   + VSWNAMI   A NG  
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYG 474

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
           +EAL LF  M + G   +P+ +T IGVLSAC HAG V+EGR  F  M+  FG+ P  +HY
Sbjct: 475 NEALELFREMLESG--EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +CMVDL  RAG L EA   +E MP + D ++ G+LL AC+  +N  + + V + LLE+E 
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           SNSG YV+ S ++A L  W+D   +R  MR++GV+K PGCSWI I
Sbjct: 593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 200/417 (47%), Gaps = 81/417 (19%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+SV K G   +  + + LI  Y++CG L+  R+VFD++ +R++ +WNS+++G +K+G+
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101

Query: 201 AKEAVELFGRMRE-------------------------------EEFLPDEITLVSVLGS 229
             EA  LF  M E                               E F+ +E +  SVL +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L D+  G  V   + K+    + Y+GSAL+DMY KCG +  A+RVFD M +++VV+W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYAS 348
           N++IT + QNG + EA+ +F  M  + V PD++TL  V+SACAS+ A+ +G+ V  +   
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPV------------------------ 373
              LR+DI            C  I +A  +F+ MP+                        
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341

Query: 374 -------TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
                   N VSWNA+I+    NG   EAL LF  + +E  +  P   +F  +L AC   
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE--SVCPTHYSFANILKACADL 399

Query: 427 GLVDEGRRL-FDLMSSSFGLIPKSEH----YSCMVDLYARAGHLSEAWDFVERMPEK 478
             +  G +    ++   F      E      + ++D+Y + G + E +    +M E+
Sbjct: 400 AELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 44/279 (15%)

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD-------------------- 279
           ++V   V+K+      ++ + LID Y KCG+L   R+VFD                    
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 280 -----------AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
                      +M  +D  TWN+M++ +AQ+    EA+  F  M   G   ++ +   VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
           SAC+ +  ++ G  V    ++     D++           CG+++DA +VF++M   N V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           SWN++I+    NG A EAL +F+ M +      P++VT   V+SAC     +  G+ +  
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLE--SRVEPDEVTLASVISACASLSAIKVGQEVHG 277

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
            +  +  L       +  VD+YA+   + EA    + MP
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/490 (38%), Positives = 284/490 (57%), Gaps = 35/490 (7%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           ++L  Y  M++L ++ D+F  P V  +C+ +     G  +H    K GL  D  V ++L+
Sbjct: 92  YALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALM 151

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA-------------------- 201
            MY+ CG L SAR +FD++ ERD+VSW++MI  Y  + Y                     
Sbjct: 152 QMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCN 211

Query: 202 --KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +E   LF RM EE   P++IT++S++ SCG +G + LGK +  ++++N   ++  + +
Sbjct: 212 DLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALAT 271

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMYGKCG +  AR +FD+M NKDV+TW AMI+AYAQ    + A  LF +M+  GV P
Sbjct: 272 ALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRP 331

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +++T++ +LS CA  GALD+GKW   Y  ++G+  D+            CG I  A ++F
Sbjct: 332 NELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            +    +  +WN M++    +G   +AL LF  M   G   +PND+TFIG L AC HAGL
Sbjct: 392 SEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLG--VKPNDITFIGALHACSHAGL 449

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V EG+ LF+ M   FGL+PK EHY CMVDL  RAG L EA+  +E MP   +  + GA+L
Sbjct: 450 VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+  KN+++ +   + LL +E  N G  V+ S I+A    W+D A MR  +++ G+ K
Sbjct: 510 AACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKK 569

Query: 549 TPGCSWIGID 558
            PG S I ++
Sbjct: 570 EPGMSSIEVN 579



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 201/385 (52%), Gaps = 38/385 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH---------------------SLKLYYQ 109
           A LLF ++S  +  +++ MIR   T +  +S                        +L+ +
Sbjct: 163 ARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVR 222

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M    + P++ T   + ISC  + A+  G  +H+ + + G      ++ +L+ MY +CG+
Sbjct: 223 MIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGE 282

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           + SAR +FD ++ +D+++W +MIS Y++      A +LF +MR+    P+E+T+VS+L  
Sbjct: 283 IRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSL 342

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C   G L +GKW   ++ K  ++++  + +ALIDMY KCG +  A+R+F   +++D+ TW
Sbjct: 343 CAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTW 402

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-DKYAS 348
           N M+  Y  +G   +A+ LF  M+  GV P+ IT IG L AC+  G +  GK + +K   
Sbjct: 403 NVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIH 462

Query: 349 QRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEAL 396
             GL   +             G +D+A K+ E MPVT  ++ W AM++A     + H+  
Sbjct: 463 DFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAAC----KIHKNS 518

Query: 397 LLFERMSKEGGAARPNDVTFIGVLS 421
            + E  ++E  A  P +  +  ++S
Sbjct: 519 NMGELAARELLALEPQNCGYKVLMS 543



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 42/305 (13%)

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + + A+  +  MR+ +   D   + SVL +C  +    +GK + GF VKN +  + ++ +
Sbjct: 89  HPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVN 148

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ--NGLSNEAIM---------- 307
           AL+ MY +CG+LV AR +FD M  +DVV+W+ MI AY     G S  +I+          
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYI 208

Query: 308 ----------LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--- 354
                     LF RM    V P+ IT++ ++ +C  +GA+ LGK +  Y  + G      
Sbjct: 209 RCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLA 268

Query: 355 ------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                 D++  CG I  A  +F+ M   + ++W AMISA A       A  LF +M   G
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGR---RLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
              RPN++T + +LS C   G +D G+      D       +I K    + ++D+YA+ G
Sbjct: 329 --VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILK----TALIDMYAKCG 382

Query: 464 HLSEA 468
            +S A
Sbjct: 383 DISGA 387


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 319/552 (57%), Gaps = 21/552 (3%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +++ C   K +Q    IH  +    +   +F+   ++D+    ++   A  LF ++   +
Sbjct: 36  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERD 95

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              + VMI G      K + SL L+ +M+  G+ PD      V  +CA L A++    + 
Sbjct: 96  LVTWTVMIGGYAEC-GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID 154

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + +     D  +  ++I MYA+CG ++SAR++FD + E++++SW++MI+ Y   G  +
Sbjct: 155 DYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR 214

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A++LF  M     LPD+ITL S+L +C DL +L +G+ +   V K  +DL+ ++ +AL+
Sbjct: 215 KALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALV 274

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMYGKC  +  AR +FD M  +D+VTW  MI  YA+ G +NE+++LF++M+  GV PDK+
Sbjct: 275 DMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKV 334

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            ++ V+ ACA +GA+   + +D Y  ++  + D+            CG ++ A ++F+ M
Sbjct: 335 AMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM 394

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              N +SW+AMI+A  ++G+  +AL LF  M + G    PN +T + +L AC HAGLV+E
Sbjct: 395 EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG--ILPNKITLVSLLYACSHAGLVEE 452

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G R F LM   + +    +HY+C+VDL  RAG L EA   +E M  + DE + GA LGAC
Sbjct: 453 GLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGAC 512

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  K+  ++++    LLE++  N G+Y++ S I+AN   W+D AK R LM ++ + K PG
Sbjct: 513 RTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPG 572

Query: 552 CSWIGIDDPKQS 563
            +WI +D+    
Sbjct: 573 WTWIEVDNKSHQ 584



 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 229/391 (58%), Gaps = 16/391 (4%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y +    + ++ R G +PDN+T PFV  +C +L  L  G  +H  V+K GLD D  V  +
Sbjct: 11  YINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAA 70

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           L+ MY +C +++ AR +FD+++ERDLV+W  MI GY++ G A E++ LF +MREE  +PD
Sbjct: 71  LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 130

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           ++ +V+V+ +C  LG +   + ++ ++ + K  L+  +G+A+IDMY KCG +  AR +FD
Sbjct: 131 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 190

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  K+V++W+AMI AY  +G   +A+ LF  M  +G+ PDKITL  +L AC+ +  L +
Sbjct: 191 RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQM 250

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G+ +     + GL  D F           C  I+DA  +F+ MP  + V+W  MI   A 
Sbjct: 251 GRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE 310

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIP 447
            G A+E+L+LF++M +EG    P+ V  + V+ AC   G + + R + D +    F L  
Sbjct: 311 CGNANESLVLFDKMREEG--VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL-- 366

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                + M+D++A+ G +  A +  +RM EK
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEK 397



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           M+  +A+ G        F  +   G  PD  TL  V+ AC  +  L +G+ +     + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  D F           C  I+DA  +F+ M   + V+W  MI   A  G+A+E+L+LFE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLY 459
           +M +EG    P+ V  + V+ AC   G + + R + D +    F L       + M+D+Y
Sbjct: 121 KMREEG--VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQL--DVILGTAMIDMY 176

Query: 460 ARAGHLSEAWDFVERMPEK 478
           A+ G +  A +  +RM EK
Sbjct: 177 AKCGCVESAREIFDRMEEK 195


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 301/526 (57%), Gaps = 54/526 (10%)

Query: 85  AFNVMIRGLTTA--WQKYSHS-----LKLYYQMKRLGL-KPDNFTYPFVFISCANLLALN 136
           A+N  IR L+ +    ++ H      L LY  + R G  +PD+ T+PF+  +CA L    
Sbjct: 83  AYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWG 142

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
           +G +  + V ++GLD D  V ++     +  G ++ AR++FD    RDLVSWN++I GY 
Sbjct: 143 YGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYV 202

Query: 197 KMGYAKEAVELFGRMREEEFL--PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           + G   EA+ELF RM  E+ +  PDE+T+++ +  CG + DL LG+ + GFV  + +   
Sbjct: 203 RRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCT 262

Query: 255 FYMGSALIDMYGKCGALV-------------------------------PARRVFDAMVN 283
             + +AL+DMY KCG+L                                 AR+VFD M  
Sbjct: 263 VRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPE 322

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +DV  WNA++T Y Q     EA+ LF+ M+ A V PD+IT++ +L+AC+ +GAL++G WV
Sbjct: 323 RDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWV 382

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            +Y  +  L   +            CG+I+ A+ +F+++P  N ++W AMI  LA +G A
Sbjct: 383 HRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHA 442

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
           +EA+  F  M + G   +P+++TFIGVLSAC HAGLV EGR  F LM + + L  K +HY
Sbjct: 443 NEAIEHFRTMIELG--QKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHY 500

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           SCM+DL  RAGHL EA   V  MP + D +V GA+  AC+ Q N  + ++    L+EI+ 
Sbjct: 501 SCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDP 560

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S+SG YV+ + ++A   M   + K+RA+MR  GV K PGCS I ++
Sbjct: 561 SDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELN 606


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 308/554 (55%), Gaps = 24/554 (4%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-----LKDFNYASLLFHQ 77
           L+  LL L+ KC   ++ +QIH  +L + +   + ++ +  +     + D +Y      Q
Sbjct: 8   LKWVLLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLKQ 67

Query: 78  ISRP-NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
                + +  N++I G  +  Q    ++ +Y    R G  PD +T+P V  SCA    + 
Sbjct: 68  FDWSLSSFPCNLLISGYASG-QLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIG 126

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
                HS   K GL  D +V ++L+ +Y+ CG    A KVF+++  RD+VSW  +ISGY 
Sbjct: 127 EVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYV 186

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           K G   EA+ LF RM  E   P+  T VS+LG+CG LG L LGK + G V K        
Sbjct: 187 KTGLFNEAISLFLRMNVE---PNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELV 243

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +A++DMY KC ++  AR++FD M  KD+++W +MI    Q     E++ LF++M+ +G
Sbjct: 244 VCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASG 303

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
             PD + L  VLSACAS+G LD G+WV +Y     ++ D+            CG ID A 
Sbjct: 304 FEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQ 363

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           ++F  MP  N  +WNA I  LA NG   EAL  FE + + G   RPN+VTF+ V +AC H
Sbjct: 364 RIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESG--TRPNEVTFLAVFTACCH 421

Query: 426 AGLVDEGRRLFDLMSSS-FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
            GLVDEGR+ F+ M+S  + L P  EHY CMVDL  RAG + EA + ++ MP   D  +L
Sbjct: 422 NGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQIL 481

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           GALL +     N   +Q +++ L  +E  +SG YV+ S ++A  K W +   +R LM++K
Sbjct: 482 GALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQK 541

Query: 545 GVSKTPGCSWIGID 558
           G+SK PG S I +D
Sbjct: 542 GISKAPGSSIIRVD 555


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/554 (36%), Positives = 323/554 (58%), Gaps = 31/554 (5%)

Query: 29  SLLKKCPS---TKTVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
           S+LK C     T+  ++IH  +L   + +     N L++   +     YA L+F ++   
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA----LNH 137
           +  +++ MIR L+   +++  +L+L  +M  + ++P         +S  NL A    +  
Sbjct: 159 DVVSWSTMIRSLSRN-KEFDMALELIREMNFMQVRPSEVA----MVSMVNLFADTANMRM 213

Query: 138 GVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
           G ++H+ V +   +E   V  + +L+ MYA+CG L  AR++F+ + ++ +VSW +MI+G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            +    +E  +LF RM+EE   P+EIT++S++  CG  G L LGK +  ++++N   ++ 
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            + +AL+DMYGKC  +  AR +FD+  N+DV+ W AM++AYAQ    ++A  LF++M+ +
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           GV P K+T++ +LS CA  GALDLGKWV  Y  +  +  D             CG I+ A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F +    +   WNA+I+  A +G   EAL +F  M ++G   +PND+TFIG+L AC 
Sbjct: 454 GRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQG--VKPNDITFIGLLHACS 511

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLV EG++LF+ M  +FGL+P+ EHY CMVDL  RAG L EA + ++ MP K + IV 
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 571

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           GAL+ AC+  KN  + +     LLEIE  N G  V+ S I+A    W D+A +R  M+  
Sbjct: 572 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 631

Query: 545 GVSKTPGCSWIGID 558
           G+ K PG S I ++
Sbjct: 632 GMKKEPGHSVIEVN 645



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 189/365 (51%), Gaps = 20/365 (5%)

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
           NF  P V  +C  +     G  +H  V K GLD D  V ++L+ MY  C  ++ AR VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           ++ ERD+VSW++MI   S+      A+EL   M   +  P E+ +VS++    D  ++ +
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 239 GKWVEGFVVKNKMDLNFYMG----SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           GK +  +V++N    N +MG    +AL+DMY KCG L  AR++F+ +  K VV+W AMI 
Sbjct: 214 GKAMHAYVIRNSN--NEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR- 353
              ++    E   LF RM+   + P++IT++ ++  C   GAL LGK +  Y  + G   
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 354 --------HDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
                    D++  C  I +A  +F+     + + W AM+SA A      +A  LF++M 
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G   RP  VT + +LS C  AG +D G+ +   +      +    + + +VD+YA+ G
Sbjct: 392 TSG--VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN-TALVDMYAKCG 448

Query: 464 HLSEA 468
            ++ A
Sbjct: 449 DINAA 453


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 217/597 (36%), Positives = 321/597 (53%), Gaps = 61/597 (10%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL---LIRIIDLKDF-NY 70
           T+ +    ++ +L+ +  KC      +++  +M     Q+  F    LI ++    F + 
Sbjct: 44  TQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRM----PQRNTFTWNSLISVLTKSGFLDE 99

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+ LF  +  P++ ++N M+ G      ++  SL+ + +M R     + +++     +CA
Sbjct: 100 AARLFGSMPEPDQCSWNSMVSGFAQH-DRFEESLEYFVKMHREDFLLNEYSFGSALSACA 158

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L+ LN G  VH+ V K     D ++  +LI MY++CG +  A +VF  + ER+LV+WNS
Sbjct: 159 GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNS 218

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-N 249
           +I+ Y + G A EA+E+F RM +    PDE+TL SV+ +C  L  L  G  +   VVK N
Sbjct: 219 LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTN 278

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFD------------------------------ 279
           K   +  +G+AL+DMY KC  +  ARRVFD                              
Sbjct: 279 KFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMF 338

Query: 280 -AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             M  ++VV+WNA+I  Y QNG + EA+ LF  +K   + P   T   +LSACA++  L 
Sbjct: 339 SKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLL 398

Query: 339 LGKWVDK------YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
           LG+          +  Q G   DIF           CGSI+D  +VFE M   + VSWNA
Sbjct: 399 LGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNA 458

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           +I   A NG   EAL +F +M   G   +P+ VT IGVL AC HAGLV+EGR  F  M  
Sbjct: 459 IIVGYAQNGYGAEALQIFRKMLVCG--EKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE 516

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
             GLIP  +HY+CMVDL  RAG L+EA + +E MP   D +V G+LL AC+   N ++ +
Sbjct: 517 -HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGK 575

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              + LLEI+  NSG YV+ S ++A L  W D  ++R LMR++GV+K PGCSWI ++
Sbjct: 576 HAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVE 632



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 206/441 (46%), Gaps = 81/441 (18%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P++  +  +  SC    +      VH+ +       +  + + LI +Y +C  LD ARK+
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE----------------------- 213
           FD + +R+  +WNS+IS  +K G+  EA  LFG M E                       
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 214 --------EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
                   E+FL +E +  S L +C  L DL +G  V   V K++   + YMGSALIDMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG++  A  VF  M+ +++VTWN++IT Y QNG ++EA+ +F RM  +G+ PD++TL 
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 326 GVLSACASIGALDLGKWVD-KYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
            V+SACAS+ AL  G  +  +       R D+            C  +++A +VF+ M +
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 374 -------------------------------TNEVSWNAMISALAFNGRAHEALLLFERM 402
                                           N VSWNA+I+    NG   EAL LF  +
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEH----YSCMVD 457
            +E  +  P   TF  +LSAC +   +  GR+    ++   F     +E      + ++D
Sbjct: 373 KRE--SIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLID 430

Query: 458 LYARAGHLSEAWDFVERMPEK 478
           +Y + G + +     E+M E+
Sbjct: 431 MYMKCGSIEDGSRVFEKMKER 451


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 310/572 (54%), Gaps = 49/572 (8%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQK-PNFLLIRIIDLKDFN---YASLLFHQISRPNEYA 85
           LL++C S   + Q+H  ++++ +    + +L     L       YA  LF +I  P+ + 
Sbjct: 18  LLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFV 77

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N +IR    +      +L L   M R G+ P+ FT PF+  +CA + A  H +  H  V
Sbjct: 78  YNSLIRAYCNS-HCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K+G      V ++L+  YA  G L  +R+ FDE+ +R++VSWNSMI+GY++ G  +EA 
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            LF  MR +  L DE TLVS+L +C   G+L  GK V   ++     ++  + +AL+DMY
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMY 256

Query: 266 GKCGALVPARRVFDAM-------------------------------VNKDVVTWNAMIT 294
           GKCG L+ A   FD M                                 K +++WNAMI+
Sbjct: 257 GKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMIS 316

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK------YAS 348
            Y Q G  +EA+ L+NRMK  G+ PD+ TL  VLSAC  +G L  GK +        +  
Sbjct: 317 CYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP 376

Query: 349 QRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
              L + +      CG +D A+ +F +MP  N +SWNA+I ALA +GRA +AL+ F  M 
Sbjct: 377 GVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMV 436

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +  A  P+++TF+ +LSAC H GL++ G+  F  M   + + P  EHY+CMVDL  R G
Sbjct: 437 SD--AFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L++A D ++ MP + D +V GALLGAC+   +  + ++V++ LLE+E  + G +V+ S 
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +      W+D  ++R LMRE G+ K  G S I
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSI 586


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 309/559 (55%), Gaps = 50/559 (8%)

Query: 38   KTVQQIHTQMLINFIQKPNFLLIRIIDL-----KDFNYASLLFHQISRPNEYAFNVMIRG 92
            + V+++H  ++++ +    + + ++I L      D   A  +F QI  P  + +N ++RG
Sbjct: 855  EAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRG 914

Query: 93   LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
            L  +      ++  Y + +  G+KPDN T+PFV  +CA   A   G  +H+ V K+G   
Sbjct: 915  LAQS-DAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLL 973

Query: 153  DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
            D  VS+SLI +YA CG L  AR VF+E+  +D+VSWNS+I GYS+    KE + LF  M+
Sbjct: 974  DIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQ 1033

Query: 213  EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID--------- 263
             EE   D++T+V V+ +C  LGD  +   +  ++  N ++++ Y+G+ LID         
Sbjct: 1034 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQ 1093

Query: 264  ----------------------MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
                                   Y K G LV A+++FD + NKD+++W++MI AY+Q   
Sbjct: 1094 SAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 1153

Query: 302  SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
             ++++ LF +M+ A V PD + +  VLSACA +GALDLGKW+  Y  +  ++ D      
Sbjct: 1154 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENS 1213

Query: 358  -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                   CG + +AL+VF DM   + +SWN++I  LA NG   EAL +F  M  EG   R
Sbjct: 1214 LIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEG--PR 1271

Query: 411  PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
            PN+VTF+GVL AC +  LV+EG   F+ M S   L P+ +HY C+VD+ +RAG L +A  
Sbjct: 1272 PNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVS 1331

Query: 471  FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            F+  MP   D +V   LLGAC+   N  V++   + L E++  NS + ++ S I+A+   
Sbjct: 1332 FISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADR 1391

Query: 531  WDDSAKMRALMREKGVSKT 549
            W D+  +R    +  V ++
Sbjct: 1392 WSDAMNVRRWTADNAVGES 1410



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 212/420 (50%), Gaps = 50/420 (11%)

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
           +A KVFD+        W + +  YS   +  EA+ LF   R+     D      VL +C 
Sbjct: 436 TALKVFDQ----SPAPWRAFLKAYSHGPFPLEALHLFKHARQH-LADDTFVFTFVLKACA 490

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            LG    G  +   VV+   + + Y+ +ALI++Y     LV AR+VFD M  K+VV+WN 
Sbjct: 491 GLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNV 550

Query: 292 MITAYAQNG-------------------------------LSNEAIMLFNRMKYAGVNPD 320
           MIT +A  G                               L  EA+ L   M   G++P 
Sbjct: 551 MITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPS 610

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG-----------SIDDALKVFE 369
           +IT++ V+ A +++G + +G+ ++ Y  ++G+  D   G           S+ ++LKVF+
Sbjct: 611 EITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 670

Query: 370 DM-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           +M    N VSW ++IS  A +G + EAL LF  M + G   +PN +TF+ V++AC H GL
Sbjct: 671 EMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG--IKPNRITFLSVINACSHGGL 728

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G   F  M   + + P+ +H+ C++D+  RAG L EA   +E +P +V+  V   LL
Sbjct: 729 VEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILL 788

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           G C K     + +R ++++ ++E  + G++ + S +   L  + D+ + R L+ ++ + K
Sbjct: 789 GCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 194/392 (49%), Gaps = 51/392 (13%)

Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY--A 165
           ++  R  L  D F + FV  +CA L     G  +H+ V + G +   +V  +LI +Y  +
Sbjct: 468 FKHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMS 527

Query: 166 RC-----------------------------GKLDSARKVFDEIRERDLVSWNSMISGYS 196
           RC                             G+++ AR +FD++  R++VSW  +I GY+
Sbjct: 528 RCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYT 587

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +     EA+ L   M      P EIT+++V+ +  +LG +++G+ + G+  K  +  +  
Sbjct: 588 RACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDAR 647

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           +G++LID+Y K G++  + +VFD M++ +++V+W ++I+ +A +GLS EA+ LF  M+ A
Sbjct: 648 VGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRA 707

Query: 316 GVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDD 363
           G+ P++IT + V++AC+  G ++ G       V +Y     ++H     D+    G + +
Sbjct: 708 GIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 767

Query: 364 ALKVFEDMPV-TNEVSWNAMISA------LAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
           A ++ E +P+  N   W  ++        +A   RA + +   ER S    A   N +T 
Sbjct: 768 AEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTE 827

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           +G  S    A  + + R++  L  +    + K
Sbjct: 828 LGRFSDAEQARKLLDQRKIVKLQEAVMEAVKK 859



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 222/487 (45%), Gaps = 42/487 (8%)

Query: 41   QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
            +++  +M +  +   N ++       +  YA LLF Q+   N  ++  +I G T A   Y
Sbjct: 534  RKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL-Y 592

Query: 101  SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSL 160
            + +L L   M   G+ P   T   V  + +NL  +  G  ++    K G+  D  V +SL
Sbjct: 593  AEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSL 652

Query: 161  ITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
            I +YA+ G + ++ KVFDE+ + R+LVSW S+ISG++  G + EA+ELF  MR     P+
Sbjct: 653  IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712

Query: 220  EITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
             IT +SV+ +C   G +  G  + +  V +  +D        +IDM G+ G L  A ++ 
Sbjct: 713  RITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQII 772

Query: 279  DAM-VNKDVVTWNAMI---TAYAQNGLSNEAIMLFNRMKYA-----GVNPDKITLIGVLS 329
            + + +  +V  W  ++   + Y +  +   AI + + ++        V  + +T +G  S
Sbjct: 773  EGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFS 832

Query: 330  -ACASIGALDLGKWVD------------------------KYASQRGLR-HDIFCGSIDD 363
             A  +   LD  K V                         +YA  + +R + +    +  
Sbjct: 833  DAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVS 892

Query: 364  ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
            A KVF+ +       WN ++  LA +    +A++ +++  ++G   +P+++TF  VL AC
Sbjct: 893  AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKG--MKPDNLTFPFVLKAC 950

Query: 424  VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
                   EG ++ + +    G +      + ++ LYA  G L+ A      M  K D + 
Sbjct: 951  AKTCAPKEGEQMHNHV-IKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVK-DVVS 1008

Query: 484  LGALLGA 490
              +L+G 
Sbjct: 1009 WNSLIGG 1015


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/550 (36%), Positives = 307/550 (55%), Gaps = 20/550 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQML-INFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           LL       S K  QQ+H  M+  + ++   +L  ++          + A ++F  I   
Sbjct: 65  LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK 124

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N + +N MIRG  +       SL LY +M   G + DNFTYPFV  +C +LL +  G  V
Sbjct: 125 NSFLWNFMIRGYASNGLPMK-SLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS V   GL+ D +V +SL+ MYA+ G + +AR VFD + ERDL SWN+MISGY+K   +
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMGSA 260
             A  +F  M +     D  TL+ +L +C DL  +  GK + G+ V+N + + N +  ++
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LI+MY  C  +V ARR+F+ +  KD V+WN+MI  YA+NG + E++ LF RM   G  PD
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
           ++T I VL AC  I AL  G  +  Y  ++G   +             CGS+  + +VF+
Sbjct: 364 QVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFD 423

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           +MP  + VSW+AM++    +GR  EA+ + + M  +  +  P++  F  +LSAC HAGLV
Sbjct: 424 EMPDKSLVSWSAMVAGYGLHGRGREAISILDGM--KANSVIPDNGVFTSILSACSHAGLV 481

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            EG+ +F  M   + + P   HYSCMVDL  RAGHL EA+  +  M  K    +  ALL 
Sbjct: 482 VEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLT 541

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           A +  KN  +++   Q + ++      +Y+  S I+A  K WDD  ++RA++R KG+ K+
Sbjct: 542 ASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKS 601

Query: 550 PGCSWIGIDD 559
           PGCS+I +D+
Sbjct: 602 PGCSFIELDN 611


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 302/547 (55%), Gaps = 21/547 (3%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           LL++C   ++++Q   +H  +L + IQ      N LL           A  +F  I   N
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRN 161

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  MI       Q    + K Y  MK  G KPD  T+  +  +  N   L  G  VH
Sbjct: 162 IVSWTAMIEAFVAGNQNLE-AYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K GL+ +  V  SL+ MYA+CG +  A+ +FD++ E+++V+W  +I+GY++ G   
Sbjct: 221 MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVD 280

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            A+EL  +M++ E  P++IT  S+L  C     L  GK V  +++++      ++ +ALI
Sbjct: 281 VALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALI 340

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG L  AR++F  + ++DVVTW AM+T YAQ G  +EAI LF RM+  G+ PDK+
Sbjct: 341 TMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKM 400

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T    L++C+S   L  GK + +     G   D++           CGS+DDA  VF  M
Sbjct: 401 TFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQM 460

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              N V+W AMI+  A +GR  EAL  FE+M K+G   +P+ VTF  VLSAC H GLV+E
Sbjct: 461 SERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG--IKPDKVTFTSVLSACTHVGLVEE 518

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           GR+ F  M   +G+ P  EHYSC VDL  RAGHL EA + +  MP +    V GALL AC
Sbjct: 519 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSAC 578

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   + +  +R  + +L+++  + G YV  S I+A    ++D+ K+R +M ++ V K PG
Sbjct: 579 RIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPG 638

Query: 552 CSWIGID 558
            SWI +D
Sbjct: 639 QSWIEVD 645



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 115/239 (48%), Gaps = 17/239 (7%)

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D +  +  ++   + G   EA+ + N M   G         G+L  CA + +L+ G+ V 
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
               + G++ + +           CGS+ DA +VF+ +   N VSW AMI A     +  
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL-FDLMSSSFGLIPKSEHY 452
           EA   +E M   G   +P+ VTF+ +L+A  +  L+  G+++  ++  +   L P+    
Sbjct: 180 EAYKCYETMKLAG--CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG-- 235

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           + +V +YA+ G +S+A    +++PEK + +    L+    +Q   DV+  +++ + + E
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQAE 293


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 310/554 (55%), Gaps = 27/554 (4%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQ 77
           LL E+ +SLL+ C ++K V QI  Q++ N  Q   ++  +++     LK   YA  LF Q
Sbjct: 36  LLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQ 95

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  PN   +N M RG   + + Y   + L++QMK + ++P+ FT+P V  SC  + AL  
Sbjct: 96  IPDPNIALWNSMFRGYAQS-ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIE 154

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH  + K G   +  V  +LI MY+  G +  A K+F E+ ER++V+W SMI+GY  
Sbjct: 155 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYIL 214

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
                 A  LF    E + +   I +   +    + GD+V  + +  F      D+ F+ 
Sbjct: 215 SADLVSARRLFDLAPERDVVLWNIMVSGYI----EGGDMVEARKL--FHEMPNRDVMFW- 267

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAG 316
            + ++  Y   G +     +F+ M  +++ +WNA+I  YA NGL  E +  F RM   + 
Sbjct: 268 -NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESD 326

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V P+  TL+ VLSACA +GALDLGKWV  YA   GL+ +++           CG I++A+
Sbjct: 327 VPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 386

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VF  M   + +SWN +I  LA + R  +AL LF +M   G   +P+ +TFIG+L AC H
Sbjct: 387 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG--QKPDGITFIGILCACTH 444

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            GLV++G   F  M+  + ++P+ EHY CMVD+ ARAG L +A  FV +MP + D ++  
Sbjct: 445 MGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWA 504

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
            LLGAC+  KN ++++  +Q L+E+E  N  NYV+ S I+ +   W+D A+++  MR+ G
Sbjct: 505 GLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTG 564

Query: 546 VSKTPGCSWIGIDD 559
             K PGCS I ++D
Sbjct: 565 FKKLPGCSLIEVND 578


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 312/557 (56%), Gaps = 29/557 (5%)

Query: 20  PSL-LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-----LKDFNYASL 73
           P L L+  LLSLL+K  ++  + QIH Q++   +    F   R++D       + NYA L
Sbjct: 6   PKLQLKNPLLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAEL 65

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F QI +PN +  N M++  T +      +L+ Y +M+R GL  DN+TYPFV  +C  + 
Sbjct: 66  VFAQIHQPNSFICNTMVKCYTES-STPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMC 124

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  V     K G   D  V + LI+MY RCG+   AR VFD   E+DLVSWNSM+ 
Sbjct: 125 GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLG 184

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKNKMD 252
           GY   G  + A  +F  M E + +   I    + G    +G++   + + +    ++ + 
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIM---IDGYGKKMGEVNRARVFFDSMPTRDLVS 241

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            N     ++ID Y K G +  AR +FD M+ K+V++W+ MI  YAQ+  S EA+ LF +M
Sbjct: 242 WN-----SMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQM 296

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
              G+ PD+++++G +SAC+ +GALD G+W+  Y  +  +  DI            CGS 
Sbjct: 297 LCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSR 356

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           D+A ++F  MP  N VSWN MI  L  NG   EAL  F +M  E      +D+ F+GVL 
Sbjct: 357 DEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEME--RIPMDDLLFLGVLM 414

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HA LV EG  +F+ M   + L PK EHY C+VDL  RAG L +  + ++ MP K + 
Sbjct: 415 ACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNA 474

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
            + G+LL AC+  +N  +++ V++ L E+++ +SG YV+ S I+A++ MW+   ++R LM
Sbjct: 475 ALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLM 534

Query: 542 REKGVSKTPGCSWIGID 558
           +E+ + K  G S I +D
Sbjct: 535 KERKMKKDIGRSVIEVD 551


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 216/622 (34%), Positives = 324/622 (52%), Gaps = 89/622 (14%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           KLL L  K  S++  + +H +++     +  F+  R+ID+       +YA  +F ++S  
Sbjct: 29  KLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSER 88

Query: 82  NEYAFNVMIRGL-------TTAW-----------------------QKYSHSLKLYYQMK 111
           N ++FN +I  L        +AW                        ++  +L  + +M 
Sbjct: 89  NVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMH 148

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
           R     +++++     +C+ L  L  G  +H  + K     D  +   LI  Y++CG + 
Sbjct: 149 RDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVG 208

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            AR+VFD + E+++VSWN +I+ Y + G A EA+E FGRM E  F PDE+TL SV+ +C 
Sbjct: 209 CARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACA 268

Query: 232 DLGDLVLGKWVEGFVVK-NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV-------- 282
            L     G  +   VVK +K   +  +G+AL+DMY KCG +  AR VFD M         
Sbjct: 269 TLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSET 328

Query: 283 -----------------------NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                                   KD+V+WNA+I  Y QNG + EA+ LF  +K   V P
Sbjct: 329 TMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCP 388

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------DIF-----------CGSID 362
              T   +L+A A++  L+LG+    +  + G R       DIF           CGS++
Sbjct: 389 THYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVE 448

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           + L+VFE+M   + VSWN MI   A NG   EAL LF++M + G   +P+ VT IG L A
Sbjct: 449 EGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESG--EKPDHVTMIGTLCA 506

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLV+EGRR F  M+   GL+P  +HY+CMVDL  RAG L EA D +E MP++ D +
Sbjct: 507 CSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAV 566

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V  +LL AC+  +N  + + V + + EI+ ++SG YV+ + +++ L  W D+  +R LMR
Sbjct: 567 VWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMR 626

Query: 543 EKGVSKTPGCSWIGIDDPKQSN 564
            +GV K PGCSWI I    QSN
Sbjct: 627 RRGVVKQPGCSWIDI----QSN 644



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 130/303 (42%), Gaps = 44/303 (14%)

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           F  D      +L  C  L      + V G +++       ++ + LID+YGKCG L  AR
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 276 RVFDAMV-------------------------------NKDVVTWNAMITAYAQNGLSNE 304
           +VFD M                                 KD  +WN+MI  +AQ+    E
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+  F RM       +  +    LSAC+ +  L LG  +    S+     D+F       
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG +  A +VF+ M   N VSWN +I+    NG A EAL  F RM++ G   +P++
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELG--FKPDE 257

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           VT   V+SAC       EG ++   +  S          + +VD+YA+ G ++EA    +
Sbjct: 258 VTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFD 317

Query: 474 RMP 476
           RMP
Sbjct: 318 RMP 320


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 310/572 (54%), Gaps = 49/572 (8%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQK-PNFLLIRIIDLKDFN---YASLLFHQISRPNEYA 85
           LL++C S   + Q+H  ++++ +    + +L     L       YA  LF +I  P+ + 
Sbjct: 18  LLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFV 77

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N +IR    +      +L L   M R G+ P+ FT PF+  +CA + A  H +  H  V
Sbjct: 78  YNSLIRAYCNS-HCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K+G      V ++L+  YA  G L  +R+ FDE+ +R++VSWNSMI+GY++ G  +EA 
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREAC 196

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            LF  MR +  L DE TLVS+L +C   G+L  GK V   ++     ++  + +AL+DMY
Sbjct: 197 SLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMY 256

Query: 266 GKCGALVPARRVFDAM-------------------------------VNKDVVTWNAMIT 294
           GKCG L+ A   FD M                                 K +++WNAMI+
Sbjct: 257 GKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMIS 316

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK------YAS 348
            Y Q G  +EA+ L+NRMK  G+ PD+ TL  VLSAC  +G L  GK +        +  
Sbjct: 317 CYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNP 376

Query: 349 QRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
              L + +      CG +D A+ +F +MP  N +SWNA+I ALA +GRA +AL+ F  M 
Sbjct: 377 GVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMV 436

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +  A  P+++TF+ +LSAC H GL++ G+  F  M   + + P  EHY+CMVDL  R G
Sbjct: 437 FD--AFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L++A D ++ MP + D +V GALLGAC+   +  + ++V++ LLE+E  + G +V+ S 
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +      W+D  ++R LMRE G+ K  G S I
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSI 586


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 209/554 (37%), Positives = 297/554 (53%), Gaps = 56/554 (10%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLG 114
           N LL     L   + A  LF  I  P++ ++N ++  L    + ++  +L+    M    
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADD 146

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
              + +++     +CA    L  G  VH  V +    +D H+  +L+ MYA+C +   AR
Sbjct: 147 FVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDAR 206

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           +VFD + ER++VSWNS+I+ Y + G   EA+ LF  M    F PDE+TL SV+ +C  L 
Sbjct: 207 RVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLA 266

Query: 235 DLVLGKWVEGFVVK-NKMDLNFYMGSALIDMYGKCGALVPARRVFDAM------------ 281
               G+ V   +VK +++  +  + +AL+DMY KCG    AR +FD+M            
Sbjct: 267 AEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSIL 326

Query: 282 -------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
                              V K+V+ WN +I AYAQNG   EAI LF ++K   + P   
Sbjct: 327 AGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHY 386

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLR------HDIF-----------CGSIDDAL 365
           T   VL+AC +I  L LG+    +  + G R       D+F            GSIDD  
Sbjct: 387 TYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 446

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM--SKEGGAARPNDVTFIGVLSAC 423
           KVFE M   + VSWNAMI   A NGRA +AL LFERM  S E     P+ VT IGVLSAC
Sbjct: 447 KVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN----PDSVTMIGVLSAC 502

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H+GLVDEGRR F  M+   G+ P  +HY+CMVDL  RAGHL EA + ++ MP + D ++
Sbjct: 503 GHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVL 562

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             +LLGAC+  KN ++ +R    L E++  NSG YV+ S ++A +  W D  ++R  M++
Sbjct: 563 WASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKD 622

Query: 544 KGVSKTPGCSWIGI 557
           +GVSK PGCSWI I
Sbjct: 623 RGVSKQPGCSWIEI 636



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 101/466 (21%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           + H  V K  +  +  + ++L++ YAR G+L  AR+VFD I  R+  S+N+++S Y+++G
Sbjct: 38  AAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLG 97

Query: 200 YAKEAVELF---------------------GR------------MREEEFLPDEITLVSV 226
              EA  LF                     GR            M  ++F+ +  +  S 
Sbjct: 98  RPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASA 157

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +C    DL  G+ V G V ++    + ++G+AL+DMY KC   V ARRVFDAM  ++V
Sbjct: 158 LSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           V+WN++IT Y QNG   EA++LF  M   G  PD++TL  V+SACA + A   G+ V  +
Sbjct: 218 VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277

Query: 347 ASQRG-LRHDIF-----------CG-------------------------------SIDD 363
             +R  LR D+            CG                               +++D
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  VF  M   N ++WN +I+A A NG   EA+ LF ++ ++  +  P   T+  VL+AC
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD--SIWPTHYTYGNVLNAC 395

Query: 424 -----------VHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWD 470
                       H  ++ EG R FD     FG  P+S+ +  + +VD+Y + G + +   
Sbjct: 396 GNIAVLQLGQQAHVHVLKEGFR-FD-----FG--PESDVFVGNSLVDMYLKTGSIDDGAK 447

Query: 471 FVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIESSNS 515
             ERM  + D +   A++ G  Q  +  D      ++L   E+ +S
Sbjct: 448 VFERMAAR-DNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDS 492



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 139/289 (48%), Gaps = 13/289 (4%)

Query: 17  LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFH 76
           L D  +L   L+ +  KC  T   + I   M    +     +L       +   A ++F 
Sbjct: 284 LRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFS 343

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q+   N  A+NV+I       ++   +++L+ Q+KR  + P ++TY  V  +C N+  L 
Sbjct: 344 QMVEKNVIAWNVLIAAYAQNGEE-EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQ 402

Query: 137 HGVSVHSSV------FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            G   H  V      F  G + D  V +SL+ MY + G +D   KVF+ +  RD VSWN+
Sbjct: 403 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 462

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY++ G AK+A+ LF RM      PD +T++ VL +CG  G +  G+    F+ ++ 
Sbjct: 463 MIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDH 522

Query: 251 ---MDLNFYMGSALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITA 295
                 + Y  + ++D+ G+ G L  A  +  D     D V W +++ A
Sbjct: 523 GITPSRDHY--TCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGA 569



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 147/338 (43%), Gaps = 54/338 (15%)

Query: 223 LVSVLGSCGDLGDLVL-------GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           LV+ L +   L DL+         +   G V+K+ +    ++ + L+  Y + G L  AR
Sbjct: 13  LVAHLRASSPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREAR 72

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK---------------------- 313
           RVFD +  ++  ++NA+++AYA+ G  +EA  LF  +                       
Sbjct: 73  RVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHA 132

Query: 314 ------YAGVNPDKITL-----IGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-- 360
                  A ++ D   L        LSACA+   L  G+ V    ++     D+  G+  
Sbjct: 133 GDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTAL 192

Query: 361 ID---------DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
           +D         DA +VF+ MP  N VSWN++I+    NG   EAL+LF  M   G    P
Sbjct: 193 VDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATG--FFP 250

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           ++VT   V+SAC       EGR++   M     L       + +VD+YA+ G   EA   
Sbjct: 251 DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 310

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
            + MP +   +   ++L    K  N + +Q V   ++E
Sbjct: 311 FDSMPSR-SVVSETSILAGYAKSANVEDAQVVFSQMVE 347


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 312/585 (53%), Gaps = 52/585 (8%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
            ++ +L+    KC S +  +Q+  +M    +   N ++  +  L   + A  LF  +   
Sbjct: 56  FIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPER 115

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++  +N M+ G      +   +L  +  M + G   + +T+     +C+ L  +N GV +
Sbjct: 116 DQCTWNSMVSGFAQH-DRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQI 174

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS + K     D ++  +L+ MY++CG ++ A++VFDE+ +R++VSWNS+I+ Y + G A
Sbjct: 175 HSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPA 234

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGSA 260
            EA+++F  M E    PDE+TL SV+ +C  L  + +G+ V   VVK +K+  +  + +A
Sbjct: 235 VEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNA 294

Query: 261 LIDMYGKCGALVPARRVFDA-------------------------------MVNKDVVTW 289
            +DMY KC  +  AR +FD+                               M  ++VV+W
Sbjct: 295 FVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSW 354

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           NA+I  Y QNG + EA+ LF  +K   V P   T   +L ACA +  L LG     +  +
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLK 414

Query: 350 RGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            G +       DIF           CG +++   VF  M   + VSWNAMI   A NG  
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYG 474

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
           +EAL LF  M   G   +P+ +T IGVLSAC HAG V+EGR  F  M+  FG+ P  +HY
Sbjct: 475 NEALELFREMLDSG--EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +CMVDL  RAG L EA   +E MP + D ++ G+LL AC+  +N  + + V + L E+E+
Sbjct: 533 TCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVET 592

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           SNSG YV+ S ++A L  W D+  +R LMR++GV+K PGCSWI I
Sbjct: 593 SNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKI 637



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 199/417 (47%), Gaps = 81/417 (19%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+SV K G   +  + + LI  YA+CG L+  R++FD++ +R++ +WNS+++G +K+G+
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 201 AKEAVELFGRMRE-------------------------------EEFLPDEITLVSVLGS 229
             EA  LF  M E                               E F+ +E T  S L +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L D+  G  +   + K+    + Y+GSAL+DMY KCG +  A++VFD M +++VV+W
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYAS 348
           N++IT Y QNG + EA+ +F  M  + V PD++TL  V+SACAS+ A+ +G+ V  +   
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPV------------------------ 373
              LR+DI            C  I +A  +F+ MP+                        
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARL 341

Query: 374 -------TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
                   N VSWNA+I+    NG   EAL LF  + +E  +  P   TF  +L AC   
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE--SVCPTHYTFANILKACADL 399

Query: 427 GLVDEGRRL-FDLMSSSFGLIPKSEH----YSCMVDLYARAGHLSEAWDFVERMPEK 478
             +  G +    ++   F      E      + ++D+Y + G + E +    +M E+
Sbjct: 400 ADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 38/236 (16%)

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           V  +  + +V   N +I AYA+ G   +   LF++M    V     T   V++    +G 
Sbjct: 46  VIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNV----FTWNSVVTGLTKLGF 101

Query: 337 LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           L                        D+A  +F  MP  ++ +WN+M+S  A + R  EAL
Sbjct: 102 L------------------------DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SC 454
             F  M KEG     N+ TF   LSAC     ++ G ++  L++ S  L   S+ Y  S 
Sbjct: 138 YYFAMMHKEGFVL--NEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCL---SDVYIGSA 192

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ-RVMQLLLE 509
           +VD+Y++ G++++A    + M ++   +V    L  C +Q    V   +V Q++LE
Sbjct: 193 LVDMYSKCGNVNDAQQVFDEMGDR--NVVSWNSLITCYEQNGPAVEALKVFQVMLE 246


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/559 (35%), Positives = 312/559 (55%), Gaps = 27/559 (4%)

Query: 19  DPSLLREKLLSLLKKCPSTKTV---QQIHTQML----INFIQKPNFLLIRIIDLKDFNYA 71
           +PS++    LS+L  C S   +   +++H Q++    ++  +    L+   +     + A
Sbjct: 155 EPSII--TFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDA 212

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
             +F  +   +   FNVM+ G   +  W+K   + +L+Y+M+++GLKP+  ++  +   C
Sbjct: 213 RQVFDGLHIRDVSTFNVMVGGYAKSGDWEK---AFELFYRMQQVGLKPNKISFLSILDGC 269

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
               AL  G +VH+     GL +D  V+ SLI MY  CG ++ AR+VFD ++ RD+VSW 
Sbjct: 270 WTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWT 329

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
            MI GY++ G  ++A  LF  M+EE   PD IT + ++ +C    +L   + +   V   
Sbjct: 330 VMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIA 389

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               +  + +AL+ MY KCGA+  AR+VFDAM  +DVV+W+AMI AY +NG   EA   F
Sbjct: 390 GFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETF 449

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC----------- 358
           + MK + + PD +T I +L+AC  +GALD+G  +   A +  L   +             
Sbjct: 450 HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKH 509

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS++ A  +F+ M   + ++WNAMI   + +G A EAL LF+RM KE    RPN VTF+G
Sbjct: 510 GSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKE--RFRPNSVTFVG 567

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSAC  AG VDEGRR F  +    G++P  + Y CMVDL  RAG L EA   ++ MP K
Sbjct: 568 VLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVK 627

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +  +LL AC+   N DV++R  +  L I+  +   YV  S ++A   MW++ AK+R
Sbjct: 628 PTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVR 687

Query: 539 ALMREKGVSKTPGCSWIGI 557
            +M  +G+ K  GC+WI +
Sbjct: 688 KVMESRGIRKEQGCTWIEV 706



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 233/483 (48%), Gaps = 47/483 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +       +N +I G          +  L+ QM   GL+P   T+  V  +C+
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGH-VKEAFALFRQMVDEGLEPSIITFLSVLDACS 169

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +   LN G  VH+ V   G   D  +  +L++MY + G +D AR+VFD +  RD+ ++N 
Sbjct: 170 SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV 229

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M+ GY+K G  ++A ELF RM++    P++I+ +S+L  C     L  GK V    +   
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  +  + ++LI MY  CG++  ARRVFD M  +DVV+W  MI  YA+NG   +A  LF 
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+  G+ PD+IT + +++ACA    L+  + +       G   D+            CG
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCG 409

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +I DA +VF+ MP  + VSW+AMI A   NG   EA   F  M +      P+ VT+I +
Sbjct: 410 AIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSN--IEPDGVTYINL 467

Query: 420 LSACVHAGLVDEGRRLFD------------------LMSSSFGLIPKSEH---------- 451
           L+AC H G +D G  ++                   +M++  G + ++ +          
Sbjct: 468 LNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDV 527

Query: 452 --YSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQL 506
             ++ M+  Y+  G+  EA    +RM +   + + +    +L AC +    D  +R    
Sbjct: 528 ITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTY 587

Query: 507 LLE 509
           LLE
Sbjct: 588 LLE 590



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 210/388 (54%), Gaps = 23/388 (5%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D+ TY  +F  C  L     G  V   + + G   + +  ++LI +Y+ CG +  AR++F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D +  + +V+WN++I+GY+++G+ KEA  LF +M +E   P  IT +SVL +C     L 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            GK V   VV      +F +G+AL+ MY K G++  AR+VFD +  +DV T+N M+  YA
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI- 356
           ++G   +A  LF RM+  G+ P+KI+ + +L  C +  AL  GK V       GL  DI 
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIR 295

Query: 357 ----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CGSI+ A +VF++M V + VSW  MI   A NG   +A  LF  M +EG
Sbjct: 296 VATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEG 355

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS-SSFG---LIPKSEHYSCMVDLYARA 462
              +P+ +T++ +++AC  +  ++  R +   +  + FG   L+      + +V +YA+ 
Sbjct: 356 --IQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVS-----TALVHMYAKC 408

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGA 490
           G + +A    + MP + D +   A++GA
Sbjct: 409 GAIKDARQVFDAMPRR-DVVSWSAMIGA 435


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 308/559 (55%), Gaps = 38/559 (6%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD-------------FNYASL 73
           +LSLL KC   KT+ Q  T   +  +  P  +  +II L               FNYA+L
Sbjct: 7   ILSLLPKC---KTLLQFKTSHAL-ILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANL 62

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF QI  PN Y FN MI+G   +    + SL LY QM + G  PD+FT+PFV  +C+ + 
Sbjct: 63  LFRQIHSPNVYIFNSMIKGYAKS-NNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIY 121

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  VHS + K G + + +V+  L+ MY  C  ++S  KVFD+I + ++V+W  +I+
Sbjct: 122 DQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLIN 181

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY      +EA+E+F  M       +E+T+V+ L +C    D+  G+WV   V K   D 
Sbjct: 182 GYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDP 241

Query: 254 -------NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
                  N  + +A+++MY KCG L  AR +F+ M  +++V WN MI AY Q    NEA+
Sbjct: 242 FVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEAL 301

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-------- 358
            LF  M   G  PDK T + VLS CA    L LG+ V  Y  +  +  DI          
Sbjct: 302 GLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMY 361

Query: 359 ---GSIDDALKVFED-MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              G +  A K+F + +   + V W +MI+ALA +G  +EAL LF+ M +E  +  P+ +
Sbjct: 362 AKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIM-QEDSSLVPDHI 420

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T+IGVL AC H GLV+E ++ F+LM+ S+G++P+ EHYSCMVDL +RAGH  EA   +E 
Sbjct: 421 TYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMET 480

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           M  + +  + GALL  CQ  +N  V+ +V   L E+E   SG Y + S I+AN   W++ 
Sbjct: 481 MSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEEV 540

Query: 535 AKMRALMREKGVSKTPGCS 553
            + R +M+ K ++KT G S
Sbjct: 541 NRTRKMMKHKRIAKTIGHS 559


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 206/567 (36%), Positives = 309/567 (54%), Gaps = 29/567 (5%)

Query: 14  FTELNDPSLLREKL--LSLLKKCPSTKTV---QQIHTQM----LINFIQKPNFLLIRIID 64
           FT +    L  +K   +S+L  C S   +   +++H ++    L N     N L+     
Sbjct: 133 FTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAK 192

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFT 121
                 A  +F  ++  +E ++      LT A+ +  +   SLK Y+ M + G++P   T
Sbjct: 193 CGSVRDARRVFDAMASRDEVSWTT----LTGAYAESGYAQESLKTYHAMLQEGVRPSRIT 248

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  V  +C +L AL  G  +H+ + +     D  VS +L  MY +CG +  AR+VF+ + 
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            RD+++WN+MI G    G  +EA  +F RM +E   PD +T +++L +C   G L  GK 
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE 368

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +    VK+ +  +   G+ALI+MY K G++  AR+VFD M  +DVV+W A++  YA  G 
Sbjct: 369 IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQ 428

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
             E+   F +M   GV  +KIT + VL AC++  AL  GK +     + G+  D+     
Sbjct: 429 VVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANA 488

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CGS++DA++V E M   + V+WN +I  LA NGR  EAL  FE M  E    R
Sbjct: 489 LMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSE--EMR 546

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN  TF+ V+SAC    LV+EGRR F  M   +G++P  +HY+CMVD+ ARAGHL EA D
Sbjct: 547 PNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAED 606

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +  MP K    + GALL AC+   N ++ ++  +  L++E  N+G YV  S I+A   M
Sbjct: 607 VILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGM 666

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
           W D AK+R LM+E+GV K PG SWI +
Sbjct: 667 WRDVAKLRKLMKERGVKKEPGRSWIEV 693



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 267/518 (51%), Gaps = 38/518 (7%)

Query: 28  LSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRI-----IDLKDFNYASLLFHQIS 79
           + LL+ C   K +   +Q+H  +L  F  KPN  +I       +     N A  LF + S
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHIL-RFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106

Query: 80  RPNEYAFNVMIRGLTTAWQKYSH------SLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
             +  ++NVMI G       Y+H      +  L+  M++ GL+PD FT+  +  +C++  
Sbjct: 107 NKSVVSWNVMISG-------YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           ALN G  VH  V + GL  +  V ++LI+MYA+CG +  AR+VFD +  RD VSW ++  
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y++ GYA+E+++ +  M +E   P  IT ++VL +CG L  L  GK +   +V+++   
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS 279

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  + +AL  MY KCGA+  AR VF+ + N+DV+ WN MI     +G   EA  +F+RM 
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
              V PD++T + +LSACA  G L  GK +   A + GL  D+             GS+ 
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMK 399

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA +VF+ MP  + VSW A++   A  G+  E+   F++M ++G  A  N +T++ VL A
Sbjct: 400 DARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEA--NKITYMCVLKA 457

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C +   +  G+ +   +  + G+       + ++ +Y + G + +A    E M  + D +
Sbjct: 458 CSNPVALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVV 515

Query: 483 VLGALLGA-CQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
               L+G   Q  +  +  Q+   +  E    N+  +V
Sbjct: 516 TWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFV 553



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 239/431 (55%), Gaps = 21/431 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           ASLL  + SR ++ +   MI   T  W   +  L+  +Q    G + D++ Y  +  SC 
Sbjct: 2   ASLLISRWSRVDKSS---MIPTSTDGWYAPADVLQYLHQK---GSQVDSYDYVKLLQSCV 55

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               L  G  VH  + + G+  + ++ ++L+ +Y  CG ++ AR++FD+   + +VSWN 
Sbjct: 56  KAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNV 115

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MISGY+  G  +EA  LF  M++E   PD+ T VS+L +C     L  G+ V   V++  
Sbjct: 116 MISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAG 175

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  N  +G+ALI MY KCG++  ARRVFDAM ++D V+W  +  AYA++G + E++  ++
Sbjct: 176 LANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYH 235

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----------DKYASQRGLRHDIFCG 359
            M   GV P +IT + VLSAC S+ AL+ GK +           D   S    +  I CG
Sbjct: 236 AMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCG 295

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           ++ DA +VFE +P  + ++WN MI  L  +G+  EA  +F RM KE  A  P+ VT++ +
Sbjct: 296 AVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA--PDRVTYLAI 353

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC   G +  G+ +    +   GL+      + ++++Y++AG + +A    +RMP++ 
Sbjct: 354 LSACARPGGLACGKEIH-ARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKR- 411

Query: 480 DEIVLGALLGA 490
           D +   AL+G 
Sbjct: 412 DVVSWTALVGG 422


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 200/554 (36%), Positives = 304/554 (54%), Gaps = 26/554 (4%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFNYASLLFHQ 77
           +  +LSLL KC S + ++++H  ++     K    L ++ID        D NYA L+  Q
Sbjct: 4   QNTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQ 63

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  P+ Y +N MIRG   +      S+ LY QM   G  PD+FT+PFV  +C  +   + 
Sbjct: 64  IHNPSVYIWNSMIRGFVNS-HNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDC 122

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +HS + K G + D + +  L+ MY  C  + S  KVFD I + ++V+W  +I+GY K
Sbjct: 123 GKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVK 182

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL---- 253
                EA+++F  M      P+EIT+V+ L +C    D+  G+WV   + K   D     
Sbjct: 183 NNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMST 242

Query: 254 ---NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              N  + +A+++MY KCG L  AR +F+ M  +++V+WN+MI AY Q     EA+ LF 
Sbjct: 243 SNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFF 302

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M  +GV PDK T + VLS CA   AL LG+ V  Y  + G+  DI             G
Sbjct: 303 DMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTG 362

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            + +A K+F  +   + V W +MI+ LA +G  +EAL +F+ M +E  +  P+ +T+IGV
Sbjct: 363 ELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTM-QEDSSLVPDHITYIGV 421

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC H GLV+E ++ F LM+  +G++P  EHY CMVDL +RAGH  EA   +E M  + 
Sbjct: 422 LFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQP 481

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           +  + GALL  CQ  +N  V+ +V   L E+E   SG +++ S I+A    W++    R 
Sbjct: 482 NIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRK 541

Query: 540 LMREKGVSKTPGCS 553
           +M+ K ++KT G S
Sbjct: 542 VMKHKRITKTIGHS 555


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/582 (33%), Positives = 314/582 (53%), Gaps = 51/582 (8%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQI 78
           E  +SLL+KC S   ++QIH+  +   +        R+I      +     YA  +F  I
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAI 67

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
            +P  + +N MI+G +       + + +Y  M    +KPD FT+PF+       +AL +G
Sbjct: 68  PQPTLFIWNTMIKGYSRI-NHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             + +   K G D +  V  + I M++ C  +D ARKVFD     ++V+WN M+SGY+++
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              K++  LF  M +    P+ +TLV +L +C  L DL  GK +  ++    ++ N  + 
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN--------------- 303
           + LIDM+  CG +  A+ VFD M N+DV++W +++T +A  G  +               
Sbjct: 247 NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYV 306

Query: 304 ----------------EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
                           EA+ LF  M+ + V PD+ T++ +L+ACA +GAL+LG+WV  Y 
Sbjct: 307 SWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYI 366

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            +  +++D F           CG++  A KVF++M   ++ +W AMI  LA NG   EAL
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEAL 426

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            +F  M +   +  P+++T+IGVL AC HAG+V++G+  F  M+   G+ P   HY CMV
Sbjct: 427 AMFSNMIE--ASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMV 484

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL  RAG L EA + +  MP K + IV G+LLGAC+  KN  +++   + +LE+E  N  
Sbjct: 485 DLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGA 544

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            YV+   I+A  K W++  ++R LM E+G+ KTPGCS + ++
Sbjct: 545 VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELN 586



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 155/558 (27%), Positives = 260/558 (46%), Gaps = 81/558 (14%)

Query: 51  FIQKP---NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY 107
           F+QK     F L R++DL     A  +F          +N+M+ G     Q +  S  L+
Sbjct: 143 FVQKAFIHMFSLCRLVDL-----ARKVFDMGDAWEVVTWNIMLSGYNRVKQ-FKKSKMLF 196

Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
            +M++ G+ P++ T   +  +C+ L  L  G  ++  +    ++ +  + + LI M+A C
Sbjct: 197 IEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAAC 256

Query: 168 GKLDSA-------------------------------RKVFDEIRERDLVSWNSMISGYS 196
           G++D A                               RK FD+I ERD VSW +MI GY 
Sbjct: 257 GEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYL 316

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +M    EA+ LF  M+     PDE T+VS+L +C  LG L LG+WV+ ++ KN +  + +
Sbjct: 317 RMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTF 376

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+ALIDMY KCG +  A++VF  M +KD  TW AMI   A NG   EA+ +F+ M  A 
Sbjct: 377 VGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEAS 436

Query: 317 VNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLRHDIF-----------CGSIDDA 364
           + PD+IT IGVL AC   G ++ G+ +      Q G++ ++             G +++A
Sbjct: 437 ITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEA 496

Query: 365 LKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGV 419
            +V  +MPV  N + W +++ A     R H+ + L E  +K+     P +    V    +
Sbjct: 497 HEVIVNMPVKPNSIVWGSLLGAC----RVHKNVQLAEMAAKQILELEPENGAVYVLLCNI 552

Query: 420 LSAC--------VHAGLVDEGRR------LFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
            +AC        V   +++ G +      L +L  + +  +   + +    ++YA+  ++
Sbjct: 553 YAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENM 612

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            +        P+   E+ L   LG   K+         + +   + SS  G   I+ +I 
Sbjct: 613 MQDLIKAGYSPD-TSEVFLD--LGEEDKETALYRHSEKLAIAYALISSGPG---ITIRIV 666

Query: 526 ANLKMWDDSAKMRALMRE 543
            NL+M  D   M  L+ E
Sbjct: 667 KNLRMCVDCHHMAKLVSE 684


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 194/509 (38%), Positives = 292/509 (57%), Gaps = 23/509 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N  +L    + + N +++N +I  L  +      +L+ +  M++L LKP+  T+P    S
Sbjct: 103 NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVE-ALRAFSSMRKLSLKPNRSTFPCAIKS 161

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C+ LL L+ G   H      G + D  VS +L+ MY++CG+L  AR +FDEI  R++VSW
Sbjct: 162 CSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSW 221

Query: 189 NSMISGYSKMGYAKEAVELF--------GRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            SMI+GY +   A  A+ LF        G   + E   D I +VSVL +C  + +  + +
Sbjct: 222 TSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITE 281

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V GF++K   + +  + + L+D Y KCG L  +RRVFD M  +DV++WN++I  YAQNG
Sbjct: 282 GVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNG 341

Query: 301 LSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           +S E++ +F+RM   G +N + +TL  VL ACA  G+  LGK +     + GL  ++F  
Sbjct: 342 MSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVG 401

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG ++ A K F+ M   N  SW+AM++    +G A EAL +F  M+  G  
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG-- 459

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +PN +TF+ VL+AC HAGL++EG   F  MS  F + P  EHY CMVDL  RAG+L EA
Sbjct: 460 VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA 519

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
           +D ++ M  + D +V GALLGAC+  KN D+ +   + L E++  N G YV+ S I+A+ 
Sbjct: 520 FDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADA 579

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGI 557
             W+D  +MR LM+  G+ K PG S + I
Sbjct: 580 GRWEDVERMRILMKNSGLVKPPGFSLVDI 608


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/502 (37%), Positives = 295/502 (58%), Gaps = 16/502 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +   +NVM+ G       + ++  ++ +M+R    P++ T+  V   CA
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKN-GDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHS--LITMYARCGKLDSARKVFDEIRERDLVSW 188
           + + +N G  +H  V   GL+ D  V+++  LI +Y +C  ++ ARK+FD+    D+V  
Sbjct: 260 SEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVC 319

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            +MISGY   G    A+E+F  + +E    + +TL SVL +C  L  L LGK + G ++K
Sbjct: 320 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK 379

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N    + Y+GSA++DMY KCG L  A + F  + +KD V WN+MIT+ +QNG   EAI L
Sbjct: 380 NGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDL 439

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F +M  AG   D +++   LSACA++ AL  GK +  +  +   R D+F           
Sbjct: 440 FRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 499

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG++D A +VF+ M   NEVSWN++I+A   +GR  ++L LF  M  +G   +P+ VTF+
Sbjct: 500 CGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDG--IQPDHVTFL 557

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            ++SAC HAG VDEG   F  M+   G++ + EHY+CMVDL+ RAG L+EA+  +  MP 
Sbjct: 558 AIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPF 617

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
             D  V G LLGAC+   N ++++   + L +++  NSG YV+ S + AN   W+   K+
Sbjct: 618 SPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKI 677

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R+LM+E+GV K PGCSWI +++
Sbjct: 678 RSLMKERGVQKVPGCSWIDVNN 699



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 254/504 (50%), Gaps = 32/504 (6%)

Query: 10  RHLAFTELNDPSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL- 65
           + L F+  ND SL   +L+S+L+ C     +   +Q H QML+N I     L  +++ + 
Sbjct: 33  KPLQFSIHNDDSL-APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMY 91

Query: 66  ---KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
                F  A  +F+Q+       +N MIRG T   Q +  +L  Y++M   G  PD +T+
Sbjct: 92  VLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQ-FDFALLFYFKMLGCGTLPDKYTF 150

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           P+V  +C  L ++  G  VH  +  +G + D  V  SLI  Y+  G +  AR +FD +  
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +D V WN M++GY K G    A  +F  MR  E  P+ +T   VL  C     +  G  +
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 243 EGFVVKNKMDLNFYMGS--ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            G VV + ++++  + +  ALID+Y KC  +  AR++FD     D+V   AMI+ Y  NG
Sbjct: 271 HGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNG 330

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
           ++N A+ +F  +    +  + +TL  VL ACA + AL LGK +  +  + G     +   
Sbjct: 331 MNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGS 390

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG +D A + F  +   + V WN+MI++ + NG+  EA+ LF +M   G   
Sbjct: 391 AIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAG--T 448

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDLYARAGHLS 466
           + + V+    LSAC +   +  G+ +   +M  +F    +S+ +  S ++D+Y++ G+L 
Sbjct: 449 KYDCVSISAALSACANLPALHYGKEIHAFMMRGAF----RSDLFAESALIDMYSKCGNLD 504

Query: 467 EAWDFVERMPEKVDEIVLGALLGA 490
            A    + M EK +E+   +++ A
Sbjct: 505 LACRVFDTMEEK-NEVSWNSIIAA 527



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 204/435 (46%), Gaps = 36/435 (8%)

Query: 57  FLLIRI-IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           F LI I    +D   A  +F Q +  +      MI G        +++L+++  + +  +
Sbjct: 289 FALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMN-NNALEIFRWLLQERM 347

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           + ++ T   V  +CA L AL  G  +H  + K G     +V  +++ MYA+CG+LD A +
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 407

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
            F  I ++D V WNSMI+  S+ G  +EA++LF +M       D +++ + L +C +L  
Sbjct: 408 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 467

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  GK +  F+++     + +  SALIDMY KCG L  A RVFD M  K+ V+WN++I A
Sbjct: 468 LHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAA 527

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y  +G   +++ LF+ M   G+ PD +T + ++SAC   G +D G             H 
Sbjct: 528 YGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGI------------HY 575

Query: 356 IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             C  + + L +   M       +  M+      GR +EA  +   M        P+   
Sbjct: 576 FRC--MTEELGIMARME-----HYACMVDLFGRAGRLNEAFGMINSMPFS-----PDAGV 623

Query: 416 FIGVLSACVHAGLVD----EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           +  +L AC   G V+      R LFDL   + G      +Y  + +++A AG        
Sbjct: 624 WGTLLGACRLHGNVELAEVASRNLFDLDPQNSG------YYVLLSNVHANAGQWESVLKI 677

Query: 472 VERMPEKVDEIVLGA 486
              M E+  + V G 
Sbjct: 678 RSLMKERGVQKVPGC 692



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 179/389 (46%), Gaps = 29/389 (7%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +  +C +   L+ G   H+ +   G+  +  +   L+ MY  CG    A+ +F ++R   
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
              WN MI G++ MG    A+  + +M     LPD+ T   V+ +CG L  + LG+ V  
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            +     +L+ ++GS+LI  Y + G +  AR +FD M +KD V WN M+  Y +NG  + 
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------- 354
           A  +F  M+    NP+ +T   VLS CAS   ++ G  +       GL            
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFAL 291

Query: 355 -DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
            DI+  C  ++ A K+F+     + V   AMIS    NG  + AL +F  + +E    R 
Sbjct: 292 IDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE--RMRA 349

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH-YSCMV-----DLYARAGHL 465
           N VT   VL AC     +  G+ L        G I K+ H  SC V     D+YA+ G L
Sbjct: 350 NSVTLASVLPACAGLAALTLGKEL-------HGHILKNGHGGSCYVGSAIMDMYAKCGRL 402

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQ 494
             A      + +K D +   +++ +C + 
Sbjct: 403 DLAHQTFIGISDK-DAVCWNSMITSCSQN 430


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 301/548 (54%), Gaps = 22/548 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           LL++C   ++++Q   +H  +L + IQ      N LL           A  +F  I   N
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  MI     A  K   + K Y  MK  G KPD  T+  +  +  N   L  G  VH
Sbjct: 113 IVSWTAMIEAFV-AGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + + GL+ +  V  SL+ MYA+CG +  AR +FD + E+++V+W  +I+GY++ G   
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVD 231

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            A+EL   M++ E  P++IT  S+L  C     L  GK V  +++++      ++ ++LI
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG L  AR++F  + ++DVVTW AM+T YAQ G  +EAI LF RM+  G+ PDK+
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T   VL++C+S   L  GK + +     G   D++           CGS+DDA  VF  M
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQM 411

Query: 372 PVTNEVSWNAMISA-LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
              N V+W A+I+   A +GR  EAL  F++M K+G   +P+ VTF  VLSAC H GLV+
Sbjct: 412 SERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQG--IKPDKVTFTSVLSACTHVGLVE 469

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EGR+ F  M   +G+ P  EHYSC VDL  RAGHL EA + +  MP      V GALL A
Sbjct: 470 EGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSA 529

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   + +  +R  + +L+++  + G YV  S I+A    ++D+ K+R +M ++ V K P
Sbjct: 530 CRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEP 589

Query: 551 GCSWIGID 558
           G SWI +D
Sbjct: 590 GQSWIEVD 597



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 17/231 (7%)

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           ++   + G   EA+ + N M   G         G+L  CA + +L+ G+ V     + G+
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           + + +           CGS+ DA +VF+ +   N VSW AMI A     +  EA   +E 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL-FDLMSSSFGLIPKSEHYSCMVDLYA 460
           M   G   +P+ VTF+ +L+A  +  L+  G+++  +++ +   L P+    + +V +YA
Sbjct: 139 MKLAG--CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYA 194

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           + G +S+A    +R+PEK + +    L+    +Q   DV+  +++ + + E
Sbjct: 195 KCGDISKARVIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQAE 244


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 306/588 (52%), Gaps = 56/588 (9%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           + L   LLS   +  S    +++   M        N LL     L   + A  LF  I  
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPD 109

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P++ ++N ++  L     +   +L+    M       + +++     +CA+  A   G  
Sbjct: 110 PDQCSYNAVVAALAQ-HGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ V K     D ++  +L+ MYA+C + + A+KVFD + ER++VSWNS+I+ Y + G 
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGP 228

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGS 259
             EA+ LF RM ++ F+PDE+TL SV+ +C  L     G+ V   +VK ++   +  + +
Sbjct: 229 VDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNN 288

Query: 260 ALIDMYGKCGALVPARRVFD-------------------------------AMVNKDVVT 288
           AL+DMY KCG    A+ VFD                                MV K+VV 
Sbjct: 289 ALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVA 348

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN +I  YA N    EA+ LF R+K   V P   T   VL+ACA++  L LG+    +  
Sbjct: 349 WNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVL 408

Query: 349 QRGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           + G R       D+F            GSI D  KVFE M   + VSWNAMI   A NGR
Sbjct: 409 KEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGR 468

Query: 392 AHEALLLFERM--SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           A +ALLLFERM  S E    RP+ VT IGVLSAC H+GLV EGRR F  M+   G+IP  
Sbjct: 469 AKDALLLFERMLCSNE----RPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTR 524

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           +HY+CM+DL  RAGHL E  + +E MP + D ++  +LLGAC+  KN D+ +     L E
Sbjct: 525 DHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFE 584

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++  NSG YV+ S ++A L  W D  ++R  M+ +GVSK PGCSWI I
Sbjct: 585 LDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEI 632


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 311/542 (57%), Gaps = 29/542 (5%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK-DFNYASLLFHQISRPNEYAFNV 88
           L+K C +   + Q H  ++   +++ +F++   + +    +Y++ +F+++  P+ + +N+
Sbjct: 15  LIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSISTSVSYSTSIFNRLLNPSTFLYNI 74

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGVSVHSSVFK 147
           +++  +   Q +  +  L+Y+MK+      D +TYP +   C+N L L  G  VH S  +
Sbjct: 75  LLKIFSKNSQ-FIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIR 133

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
            G+ +D +V  SLI+ Y +C ++ SARKVFDEI ER++VSW +M++GY+ +G  + A  +
Sbjct: 134 CGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRV 193

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDL--VLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           F RM E   LP    ++S LG  GDL     V  + VE  VV           + +ID Y
Sbjct: 194 FERMPERN-LPSWNAMISGLGKAGDLSGARKVFDEMVERNVVS---------FTVMIDGY 243

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            K G +  AR +FD    KDVV W+A+I+ Y++N   NEA+ +F  M    V PD+  ++
Sbjct: 244 AKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMV 303

Query: 326 GVLSACASIGALDLGKWVDKYASQRGL----RHDIF--------CGSIDDALKVFEDMPV 373
            ++SAC+ +G  DL KWVD Y SQ  +     H +         CG+++ A+K+F+DMP 
Sbjct: 304 SLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPS 363

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + +   ++I  L+ +GR  EA+ LF RM  EG    P+ V F  +L+AC   GL+++G 
Sbjct: 364 RDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEG--LIPDTVAFTVILTACSRGGLIEDGW 421

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
             FD M + + ++P   HY+CMVDL +RAG L  A+D ++ MP K      GALLGAC+ 
Sbjct: 422 HFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKL 481

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             + ++ + V   LLE+E   +G+YV+ S I+A+   W D + +R  M+E+G+ K PGCS
Sbjct: 482 HGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCS 541

Query: 554 WI 555
           +I
Sbjct: 542 YI 543


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 292/550 (53%), Gaps = 60/550 (10%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN-------YASLLFHQIS 79
           +LS  +   S   + Q H  +L + +    F   R+I     N       YA  +F +I 
Sbjct: 10  ILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP 69

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            PN Y +N +IR    +    + +L +++QM    + PD +T+ F   SC +   +  G 
Sbjct: 70  NPNSYMWNTIIRAYANSPTPEA-ALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGR 128

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H  V K GL +D  + ++LI +YA CG ++ AR + D + ERD+VSWN+++S Y++ G
Sbjct: 129 QIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERG 188

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             + A  LF  M E                                  +N    NF    
Sbjct: 189 LMELACHLFDEMTE----------------------------------RNVESWNF---- 210

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            +I  Y   G L  ARRVF     K+VV+WNAMIT Y+  G  +E ++LF  M++AGV P
Sbjct: 211 -MISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKP 269

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D  TL+ VLSACA +GAL  G+WV  Y  + G+  D F           CGSI+ AL+VF
Sbjct: 270 DNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVF 329

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
                 +  +WN++IS L+ +G    AL +F  M  EG   +PN+VTF+ VLSAC  AGL
Sbjct: 330 NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEG--FKPNEVTFVCVLSACSRAGL 387

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           +DEGR +F+LM    G+ P  EHY CMVDL  R G L EA + V++MP+K   +V  +LL
Sbjct: 388 LDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLL 447

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+   N ++++RV Q LLE+    S ++V  S ++A++  W D  ++R  MR +GV K
Sbjct: 448 GACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRK 507

Query: 549 TPGCSWIGID 558
            PGCS I +D
Sbjct: 508 DPGCSMIEVD 517



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 162/325 (49%), Gaps = 14/325 (4%)

Query: 52  IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           ++  NF++   + +     A  +F +    N  ++N MI G + A  ++S  L L+  M+
Sbjct: 205 VESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHA-GRFSEVLVLFEDMQ 263

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
             G+KPDN T   V  +CA++ AL+ G  VH+ + K G+  D  V+ +L+ MY++CG ++
Sbjct: 264 HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIE 323

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            A +VF+    +D+ +WNS+ISG S  G  + A+++F  M  E F P+E+T V VL +C 
Sbjct: 324 KALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACS 383

Query: 232 DLGDLVLGKWVEGFVVK-NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV-VTW 289
             G L  G+ +   +V  + +         ++D+ G+ G L  A  +   M  K+  V W
Sbjct: 384 RAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVW 443

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD----- 344
            +++ A   +G  N  +      K   ++P + +    LS   +     +G+W D     
Sbjct: 444 ESLLGACRNHG--NVELAERVAQKLLELSPQESSSFVQLSNMYA----SMGRWKDVMEVR 497

Query: 345 KYASQRGLRHDIFCGSIDDALKVFE 369
           +    +G+R D  C  I+    V+E
Sbjct: 498 QKMRAQGVRKDPGCSMIEVDGTVYE 522


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/555 (36%), Positives = 312/555 (56%), Gaps = 26/555 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID------LKDFNYASLLFHQISR 80
           ++S L+KC + K ++QIH+ M+   + K      R+ID      L D  YA  +F QI++
Sbjct: 8   VMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQ 67

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              Y +N MI+G      K+  +L +Y +M+R G  PD+FT+PFV   C+ +  L +G S
Sbjct: 68  RTVYIWNSMIKGYCNGGDKFG-ALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQS 126

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ + K G + D + S  L+ MY  CG L+S  KVF+ I + ++V+W S+I+G+     
Sbjct: 127 VHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQ 186

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD-------L 253
            KEA+ LF  M  E   P+EIT+ + L +     D+  GK V   + +   D        
Sbjct: 187 PKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCF 246

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMY KCG LV AR +FD M  +++V WN+MI+AY+Q G   EA+ LF  M+
Sbjct: 247 NVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDME 306

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFC--GSID 362
            AG  P+K T + V+SAC  +G    G+ +   A +              D++   G  D
Sbjct: 307 MAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDAD 366

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            ALK+F  +   + ++W  MIS LA  G+  EAL +F RM +E   A P+ +T+I VL A
Sbjct: 367 TALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVA-PDQITYIAVLWA 425

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GLV+EG++ F  M+  +G+ P  EHY CM+DL +RAGH  EA + + +MP + +  
Sbjct: 426 CSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNAT 485

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +L ++L  C+   N  ++ RV   ++E+E+S+SG YV+ S I A    W +    R +++
Sbjct: 486 ILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKLARDMLK 545

Query: 543 EKGVSKTPGCSWIGI 557
            K + KT G S++ I
Sbjct: 546 HKNIGKTLGNSFVEI 560


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 304/567 (53%), Gaps = 29/567 (5%)

Query: 14  FTELNDPSLLREKL--LSLLKKCPSTKTV---QQIHTQM----LINFIQKPNFLLIRIID 64
           FT +    L  +K   +S+L  C S   +   ++IH ++    L N     N L+     
Sbjct: 117 FTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAK 176

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFT 121
                 A  +F  ++  +E ++      LT A+ +  +   SLK Y+ M +  ++P   T
Sbjct: 177 CGSVRDARRVFDAMASRDEVSWTT----LTGAYAESGYGEESLKTYHAMLQERVRPSRIT 232

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  V  +C +L AL  G  +H+ + +     D  VS +L  MY +CG    AR+VF+ + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            RD+++WN+MI G+   G  +EA   F RM EE   PD  T  +VL +C   G L  GK 
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +     K+ +  +   G+ALI+MY K G++  AR+VFD M  +DVV+W  ++  YA    
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
             E+   F +M   GV  +KIT + VL AC++  AL  GK +     + GL  D+     
Sbjct: 413 VVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNA 472

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CGS++DA++VFE M + + V+WN +I  L  NGR  EAL  +E M  EG   R
Sbjct: 473 LMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEG--MR 530

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN  TF+ VLSAC    LV+EGRR F  MS  +G++P  +HY+CMVD+ ARAGHL EA D
Sbjct: 531 PNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAED 590

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +  +P K    + GALL AC+   N ++ +R  +  L++E  N+G YV  S I+A   M
Sbjct: 591 VILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGM 650

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
           W D AK+R  M+E+GV K PG SWI I
Sbjct: 651 WRDVAKLRKFMKERGVKKEPGRSWIEI 677



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 264/534 (49%), Gaps = 38/534 (7%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII----- 63
           L +     P +     + LL+ C   K +   +Q+H  +L   + KPN  +   +     
Sbjct: 16  LQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGV-KPNVYITNTLLKLYA 74

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH------SLKLYYQMKRLGLKP 117
                N A  LF + S  +  ++NVMI G       Y+H      +  L+  M++  L+P
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISG-------YAHRGLAQEAFNLFTLMQQERLEP 127

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D FT+  +  +C++   LN G  +H  V + GL  D  V ++LI+MYA+CG +  AR+VF
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVF 187

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D +  RD VSW ++   Y++ GY +E+++ +  M +E   P  IT ++VL +CG L  L 
Sbjct: 188 DAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALE 247

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            GK +   +V+++   +  + +AL  MY KCGA   AR VF+ +  +DV+ WN MI  + 
Sbjct: 248 KGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFV 307

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
            +G   EA   F+RM   GV PD+ T   VLSACA  G L  GK +   A++ GL  D+ 
Sbjct: 308 DSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVR 367

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                       GS+ DA +VF+ MP  + VSW  ++   A   +  E+   F++M ++G
Sbjct: 368 FGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQG 427

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
              + N +T++ VL AC +   +  G+ +   +  + GL+      + ++ +Y + G + 
Sbjct: 428 --VKANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVE 484

Query: 467 EAWDFVERMPEKVDEIVLGALLGAC-QKQKNTDVSQRVMQLLLEIESSNSGNYV 519
           +A    E M  + D +    L+G   Q  +  +  QR   +  E    N+  +V
Sbjct: 485 DAIRVFEGMSMR-DVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFV 537


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 305/550 (55%), Gaps = 22/550 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQM----LINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
            +SLLK C   + ++Q   +H +M    L   I     LL           A  +F+ + 
Sbjct: 309 FVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVK 368

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N  ++  MI G      +   +   + +M   G++P+  T+  +  +C+   AL  G 
Sbjct: 369 GRNVVSWTAMIAGFAQH-GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGR 427

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H  + K G   DD V  +L++MYA+CG L  AR VF+ I ++++V+WN+MI+ Y +  
Sbjct: 428 QIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
               AV  F  + +E   PD  T  S+L  C     L LGKWV+  +++   + + ++ +
Sbjct: 488 KYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRN 547

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+ M+  CG L+ A  +F+ M  +D+V+WN +I  + Q+G +  A   F  M+ +GV P
Sbjct: 548 ALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKP 607

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D+IT  G+L+ACAS  AL  G+ +    ++  L  D+            CGSIDDA  VF
Sbjct: 608 DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            ++P  N  SW +MI+  A +GR  EAL LF +M +EG   +P+ +TF+G LSAC HAGL
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEG--VKPDWITFVGALSACAHAGL 725

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + EG   F+ M   F + P+ EHY CMVDL+ RAG L EA +F+ +M  K D  + GALL
Sbjct: 726 IKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALL 784

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GACQ   + +++++V Q  LE++ ++ G YVI S I+A   MW +  KMR +M ++GV K
Sbjct: 785 GACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVK 844

Query: 549 TPGCSWIGID 558
            PG SWI +D
Sbjct: 845 KPGQSWIEVD 854



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/473 (30%), Positives = 252/473 (53%), Gaps = 22/473 (4%)

Query: 24  REKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           R+   SLL+ C   K +   ++IH  +  + IQ   F+   +I +     + N A  +F 
Sbjct: 104 RQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFD 163

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           ++   + Y++N+++ G     ++Y  + +L+ QM + G+KPD +T+ ++  +CA+   ++
Sbjct: 164 EMPDKDVYSWNLLLGGYVQH-RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVD 222

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  + S +   G D D  V  +LI M+ +CG +D A KVF+ +  RDL++W SMI+G +
Sbjct: 223 KGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLA 282

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +    K+A  LF  M EE   PD++  VS+L +C     L  GK V   + +  +D   Y
Sbjct: 283 RHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIY 342

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+AL+ MY KCG++  A  VF+ +  ++VV+W AMI  +AQ+G   EA + FN+M  +G
Sbjct: 343 VGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDK------YASQRGLRHDIF-----CGSIDDAL 365
           + P+++T + +L AC+   AL  G+ +        Y +   +R  +      CGS+ DA 
Sbjct: 403 IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDAR 462

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VFE +   N V+WNAMI+A   + +   A+  F+ + KEG   +P+  TF  +L+ C  
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG--IKPDSSTFTSILNVCKS 520

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              ++ G+ +  L+  + G        + +V ++   G L  A +    MPE+
Sbjct: 521 PDALELGKWVQSLIIRA-GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER 572


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 185/531 (34%), Positives = 307/531 (57%), Gaps = 20/531 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           ++IH  ++ N  Q   F +  +++L    +    A  +F ++ + +  ++N ++ G   A
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGY--A 219

Query: 97  WQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
              ++  ++++  QM+  G KPD+ T   V  + A+L AL  G S+H   F+ G +   +
Sbjct: 220 QNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN 279

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V+ +++  Y +CG + SAR VF  +  R++VSWN+MI GY++ G ++EA   F +M +E 
Sbjct: 280 VATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P  ++++  L +C +LGDL  G++V   + + K+  +  + ++LI MY KC  +  A 
Sbjct: 340 VEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAA 399

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            VF  + +K VVTWNAMI  YAQNG  NEA+ LF  M+   + PD  TL+ V++A A + 
Sbjct: 400 SVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLS 459

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
                KW+   A +  +  ++F           CG+I  A K+F+ M   + ++WNAMI 
Sbjct: 460 VTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMID 519

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               NG   EAL LF  M  + G+ +PN++TF+ V++AC H+GLV+EG   F+ M  ++G
Sbjct: 520 GYGTNGHGREALDLFNEM--QNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYG 577

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           L P  +HY  MVDL  RAG L +AW F++ MP K    VLGA+LGAC+  KN ++ ++  
Sbjct: 578 LEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTA 637

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             L +++  + G +V+ + ++A+  MWD  A++R  M +KG+ KTPGCS +
Sbjct: 638 DELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLV 688



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/518 (28%), Positives = 251/518 (48%), Gaps = 67/518 (12%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           LL+ C S K + QI   ++ N     +    ++I L         A+ +F     P E+ 
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVF----EPVEHK 105

Query: 86  FNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            +V+   +   + K S    +++ Y +M+   + P  + + ++       L L  G  +H
Sbjct: 106 LDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V   G   +     +++ +YA+C +++ A K+F+ + +RDLVSWN++++GY++ G+A+
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            AV++  +M+E    PD ITLVSVL +  DL  L +G+ + G+  +   +    + +A++
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KCG++  AR VF  M +++VV+WN MI  YAQNG S EA   F +M   GV P  +
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           +++G L ACA++G L+ G++V +   ++ +  D+            C  +D A  VF ++
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNL 405

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA--------- 422
                V+WNAMI   A NG  +EAL LF  M       +P+  T + V++A         
Sbjct: 406 KHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD--IKPDSFTLVSVITALADLSVTRQ 463

Query: 423 -------------------C-----VHA--GLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
                              C      HA  G +   R+LFDLM     +      ++ M+
Sbjct: 464 AKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMI 518

Query: 457 DLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGAC 491
           D Y   GH  EA D    M     K +EI   +++ AC
Sbjct: 519 DGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAAC 556


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 312/572 (54%), Gaps = 34/572 (5%)

Query: 4   RAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII 63
           R+     HL  T L     LRE +    + C ++K V QI  Q++ N  Q   ++  +++
Sbjct: 88  RSPTGGGHLRLTALR---CLRENM----RSCKTSKQVHQIQAQIIANGFQYNEYITPKLV 140

Query: 64  D----LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
                LK   YA  LF QI  PN   +N M RG   + + Y   + L++QMK + ++P+ 
Sbjct: 141 TICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS-ESYREVVFLFFQMKGMDIRPNC 199

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           FT+P V  SC  + AL  G  VH  + K G   +  V  +LI MY+  G +  A K+F E
Sbjct: 200 FTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCE 259

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + ER++V+W SMI+GY        A  LF    E + +   I +   +    + GD+V  
Sbjct: 260 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYI----EGGDMVEA 315

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + +  F      D+ F+  + ++  Y   G +     +F+ M  +++ +WNA+I  YA N
Sbjct: 316 RKL--FXEMPNRDVMFW--NTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHN 371

Query: 300 GLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           GL  E +  F RM   + V P+  TL+ VLSACA +GALDLGKWV  YA   GL+ +++ 
Sbjct: 372 GLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYV 431

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG I++A+ VF  M   + +SWN +I  LA + R  +AL LF +M   G 
Sbjct: 432 GNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG- 490

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             +P+ +TFIG+L AC H GLV++G   F  M+  + ++P+ EHY CMVD+ ARAG L +
Sbjct: 491 -QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQ 549

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A  FV +MP + D ++   LLGAC+  KN ++++  +Q L+E+E  N  NYV+ S I+ +
Sbjct: 550 AXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGD 609

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
              W+D A+++  MR+ G  K PGCS I ++D
Sbjct: 610 AGRWEDVARLKVAMRDTGFKKLPGCSLIEVND 641


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 176/465 (37%), Positives = 273/465 (58%), Gaps = 14/465 (3%)

Query: 105 KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           ++  Q+   G +P+ +T+  +  +CA+   LN G ++H  V K G++ D H+ +SL+ +Y
Sbjct: 177 RILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVY 236

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
           A+CG  + A KVF EI ERD+VSW ++I+G+   GY    + +F +M  E F P+  T +
Sbjct: 237 AKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFI 295

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           S+L SC  L D+ LGK V   +VKN +D N ++G+AL+DMY K   L  A  +F+ ++ +
Sbjct: 296 SILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 355

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D+  W  ++  YAQ+G   +A+  F +M+  GV P++ TL   LS C+ I  LD G+ + 
Sbjct: 356 DLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH 415

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
             A + G   D+F           CG ++DA  VF+ +   + VSWN +I   + +G+  
Sbjct: 416 SMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGG 475

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           +AL  FE M  EG    P++VTFIGVLSAC H GL++EG++ F+ +S  +G+ P  EHY+
Sbjct: 476 KALKAFEAMLDEGTV--PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYA 533

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVD+  RAG   E   F+E M    + ++   +LGAC+   N +  +R    L E+E  
Sbjct: 534 CMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPE 593

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              NY++ S +FA   MWDD   +RALM  +GV K PGCSW+ ++
Sbjct: 594 IDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVN 638



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 213/423 (50%), Gaps = 37/423 (8%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
            +S+LK C S   + +   IH Q++ + I   + L   ++++       NYA  +F +I 
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +  ++  +I G     + Y   L+++ QM   G  P+ +T+  +  SC++L  ++ G 
Sbjct: 254 ERDVVSWTALITGFVA--EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK 311

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+ + K  LD +D V  +L+ MYA+   L+ A  +F+ + +RDL +W  +++GY++ G
Sbjct: 312 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 371

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             ++AV+ F +M+ E   P+E TL S L  C  +  L  G+ +    +K     + ++ S
Sbjct: 372 QGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVAS 431

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY KCG +  A  VFD +V++D V+WN +I  Y+Q+G   +A+  F  M   G  P
Sbjct: 432 ALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVP 491

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW 379
           D++T IGVLSAC+ +G ++ GK           +H       +   K++   P      +
Sbjct: 492 DEVTFIGVLSACSHMGLIEEGK-----------KH------FNSLSKIYGITPTIEH--Y 532

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR----L 435
             M+  L   G+ HE     E M         N + +  VL AC   G ++ G R    L
Sbjct: 533 ACMVDILGRAGKFHEVESFIEEMK-----LTSNVLIWETVLGACKMHGNIEFGERAAMKL 587

Query: 436 FDL 438
           F+L
Sbjct: 588 FEL 590



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 237/484 (48%), Gaps = 55/484 (11%)

Query: 2   LLRAKAYSRHLAFTELND----PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF 57
           +LRAK   + + F  + +     S L   L+++  KC S +  +Q+  +M I  +Q+ N 
Sbjct: 1   MLRAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWN- 59

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY--SHSLKLYYQMKRLGL 115
                                            + L++A   Y    +++L+Y M+   +
Sbjct: 60  ---------------------------------QKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           + + F +  +  + A+L   ++G S+H+ V K G + D  +S++ +TMY +   +++  +
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
            F  +   +L S N+++SG+       +   +  ++  E F P+  T +S+L +C   GD
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  GK + G V+K+ ++ + ++ ++L+++Y KCG+   A +VF  +  +DVV+W A+IT 
Sbjct: 207 LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITG 266

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           +   G  +  + +FN+M   G NP+  T I +L +C+S+  +DLGK V     +  L  +
Sbjct: 267 FVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 325

Query: 356 IFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
            F G+           ++DA  +F  +   +  +W  +++  A +G+  +A+  F +M +
Sbjct: 326 DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 385

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           EG   +PN+ T    LS C     +D GR+L   M+   G        S +VD+YA+ G 
Sbjct: 386 EG--VKPNEFTLASSLSGCSRIATLDSGRQLHS-MAIKAGQSGDMFVASALVDMYAKCGC 442

Query: 465 LSEA 468
           + +A
Sbjct: 443 VEDA 446



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 163/345 (47%), Gaps = 15/345 (4%)

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V K G+  D H+  SL+ +Y +C  L  AR+V +E+  +D+  WN  +S  +     +EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           V+LF  MR      ++    S++ +   LGD   G+ +   V K   + +  + +A + M
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y K  ++    + F AM+ +++ + N +++ +      ++   +  ++   G  P+  T 
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
           I +L  CAS G L+ GK +     + G+  D             CGS + A KVF ++P 
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + VSW A+I+     G     L +F +M  EG    PN  TFI +L +C     VD G+
Sbjct: 255 RDVVSWTALITGFVAEGYG-SGLRIFNQMLAEG--FNPNMYTFISILRSCSSLSDVDLGK 311

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           ++   +  +  L       + +VD+YA+   L +A     R+ ++
Sbjct: 312 QVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 355


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 309/557 (55%), Gaps = 29/557 (5%)

Query: 20  PSL-LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-----LKDFNYASL 73
           P L L+  LLSLL+   ++  + QIH Q++   +    F   R++D       + NYA L
Sbjct: 6   PKLQLKNPLLSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAEL 65

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F QI +PN +  N M++  T +      +L+ Y +M++ GL  DN+TYPFV  +C  + 
Sbjct: 66  VFAQIHQPNSFICNTMVKCYTES-STPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMC 124

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  V     K G   D  V + LI+MY RCG+   AR VFD   E+DLVSWNSM+ 
Sbjct: 125 GLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLG 184

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKNKMD 252
           GY   G  + A  +F  M E + +   I    + G    +G++   + + +    ++ + 
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIM---IDGYGKKMGEVNRARVFFDSMPTRDLVS 241

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            N     ++ID Y K G +  AR +FB M+ K+V++W+ MI  YA +  S EA+ LF +M
Sbjct: 242 WN-----SMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQM 296

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
              G+ PD+++++G +SAC+ +GALD G+W+  Y  +  +  DI            CGS 
Sbjct: 297 LCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSX 356

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           D+A  +F  MP  N VSWN MI  L  NG   EAL  F +M  E      +D+ F+GVL 
Sbjct: 357 DEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEME--RIPMDDLLFLGVLM 414

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HA LV EG  +F+ M   + L PK EHY C+VDL  RAG L +  + ++ MP K + 
Sbjct: 415 ACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNA 474

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
            + G+LL AC+  +N  +++ V++ L E+++ +SG YV+ S I+A++ MW+   ++R LM
Sbjct: 475 ALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLM 534

Query: 542 REKGVSKTPGCSWIGID 558
           +E+ + K  G S I +D
Sbjct: 535 KERKMKKDIGRSVIEVD 551


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 192/523 (36%), Positives = 292/523 (55%), Gaps = 50/523 (9%)

Query: 84  YAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGV 139
           + +N   R L+    ++    H L LY  +   G  +PD+ T+PF+  +CA L   ++G 
Sbjct: 82  FPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGA 141

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +V   V K+G   D  V ++ +  ++  G +  AR++FDE   RD+VSWN++I GY + G
Sbjct: 142 AVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSG 201

Query: 200 YAKEAVELFGRMREE--EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
             +EA+ELF R+ E+     PDE+T++  +  C  +GDL LGK +  FV    +     +
Sbjct: 202 LPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRL 261

Query: 258 GSALIDMYGKCGALV-------------------------------PARRVFDAMVNKDV 286
            +A++DMY KCG+L                                 AR +FD M  +DV
Sbjct: 262 MNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDV 321

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
             WNA++  Y QN    EAI LF+ M+ + V+P++IT++ +LSAC+ +GAL++G WV  Y
Sbjct: 322 FPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHY 381

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
             +  L   +            CG+I  A+ VF ++PV N ++W +MI  LA +G A EA
Sbjct: 382 IDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEA 441

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           +  F+RM   G   +P+++TFIGVLSAC HAGLV+ GR+ F LM + + L  K +HYSCM
Sbjct: 442 IEYFQRMIDLG--LQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCM 499

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           +DL  RAGHL EA   V  MP   D +V GAL  AC+   N  + ++    L+E++ S+S
Sbjct: 500 IDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDS 559

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           G YV+ + ++A   M   + K+R +MR  GV K PGCS I ++
Sbjct: 560 GIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 602


>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Brachypodium distachyon]
          Length = 593

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/500 (39%), Positives = 291/500 (58%), Gaps = 27/500 (5%)

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL----KPDNFTYPFVFISCANLLAL 135
           R + + FN +I  LT + +  S + + +  +   G     +PD +T P    +CA L A 
Sbjct: 65  RASAHPFNALISHLTLSGEP-SSAFRTFAALLAAGRGEPRRPDGYTLPATLKACARLGAG 123

Query: 136 N------HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
                   G  VH+   K G      V ++L+T+Y  CG+   AR+VFDE+  RD+VSW 
Sbjct: 124 GDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWT 183

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +++S + + G   EA+ L G+M   + +P+E TL  VL +CG LG    GK V G+ ++ 
Sbjct: 184 ALVSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLVACGRLGAARAGKAVHGWYLRR 240

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           + DL   +G+A++DMY KC  L  ARRVFD ++ +DV++W  MI+   Q  L ++A+ +F
Sbjct: 241 ESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVF 300

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           N M+ + V PDK+ L  VLSAC S+GAL+ G+WV +Y  ++G+  D+            C
Sbjct: 301 NEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKC 360

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G ++ +L +F  MP+ N  SWNA+I+  A +G   EAL  F+RM   G A  PN+V+FI 
Sbjct: 361 GCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLA--PNEVSFII 418

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC H+GLV EG +LF+ M +S+ L P  EHY  +VDL  RAG + EA+   + MP +
Sbjct: 419 VLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMR 478

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
                 GALL ACQ  +  D SQ++++ + E+ESS SG Y + S I+A    W D  ++R
Sbjct: 479 PAVFTWGALLSACQAHRQVDFSQQILRHVHELESSESGVYALLSNIYAVNHRWADVKRVR 538

Query: 539 ALMREKGVSKTPGCSWIGID 558
            LM EKG+ K PG S I ++
Sbjct: 539 GLMSEKGLQKEPGSSVIEVN 558


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 309/547 (56%), Gaps = 21/547 (3%)

Query: 27  LLSLLKKCP----STKTVQQIHTQML--INFIQKPNFLLIRI-IDLKDFNYASLLFHQIS 79
           L+  L K P    S    +Q+H Q +   +       ++I I  +LK  + A L+F  + 
Sbjct: 7   LIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLE 66

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            P   A+  +IR  T     +S +L  + +M+  G  PD+  +P V  SC  ++ L  G 
Sbjct: 67  SPPVLAWKSVIRCFTDQ-SLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE 125

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           SVH  + ++G+D D +  ++L+ MY++   +DS RKVF+ +  +D+VS+N++I+GY++ G
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSG 185

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             ++A+ +   M   +  PD  TL SVL    +  D++ GK + G+V++  +D + Y+GS
Sbjct: 186 MYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGS 245

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +L+DMY K   +  + RVF  +  +D ++WN+++  Y QNG  NEA+ LF +M  A V P
Sbjct: 246 SLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRP 305

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
             +    V+ ACA +  L LGK +  Y  + G   +IF           CG+I  A K+F
Sbjct: 306 GAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIF 365

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M + +EVSW A+I   A +G  HEA+ LFE M ++G   +PN V F+ VL+AC H GL
Sbjct: 366 DRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG--VKPNQVAFVAVLTACSHVGL 423

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VDE    F+ M+  +GL  + EHY+ + DL  RAG L EA+DF+ +M  +    V   LL
Sbjct: 424 VDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLL 483

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            +C   KN +++++V + +  I+S N G YV+   ++A+   W + AK+R  +R+KG+ K
Sbjct: 484 SSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRK 543

Query: 549 TPGCSWI 555
            P CSWI
Sbjct: 544 KPACSWI 550


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/555 (35%), Positives = 304/555 (54%), Gaps = 28/555 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQ 77
           + +LS L+ C S   + Q+H  M+ + + +    L R+ID         + +YA  +F  
Sbjct: 7   KPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  P+ Y +N MIRG + +      +L  Y +M R G  PD FT+P+V  +C+ L  +  
Sbjct: 67  IDCPSVYIWNSMIRGYSNSPNP-DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 125

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH  V K G + + +VS  L+ MY  CG+++   +VF++I + ++V+W S+ISG+  
Sbjct: 126 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN 185

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV--------VKN 249
                +A+E F  M+      +E  +V +L +CG   D+V GKW  GF+         ++
Sbjct: 186 NNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQS 245

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           K+  N  + ++LIDMY KCG L  AR +FD M  + +V+WN++IT Y+QNG + EA+ +F
Sbjct: 246 KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 305

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--IFC--------- 358
             M   G+ PDK+T + V+ A    G   LG+ +  Y S+ G   D  I C         
Sbjct: 306 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKT 365

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G  + A K FED+   + ++W  +I  LA +G  +EAL +F+RM +E G A P+ +T++G
Sbjct: 366 GDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRM-QEKGNATPDGITYLG 424

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC H GLV+EG+R F  M    GL P  EHY CMVD+ +RAG   EA   V+ MP K
Sbjct: 425 VLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVK 484

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            +  + GALL  C   +N +++ R+  ++ E E   SG YV+ S I+A    W D   +R
Sbjct: 485 PNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIR 544

Query: 539 ALMREKGVSKTPGCS 553
             M+ K V K  G S
Sbjct: 545 ESMKSKRVDKVLGHS 559


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 216/618 (34%), Positives = 315/618 (50%), Gaps = 91/618 (14%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLL-------IRIIDLKD------------ 67
           L  LL+  P+    +  H ++L + +    FLL        R+  L+D            
Sbjct: 23  LADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRN 82

Query: 68  -FNYASLL---------------FHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQM 110
            F+Y +LL               F  I  P++ ++N ++  L    + ++  +L+    M
Sbjct: 83  TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAM 142

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
                  + +++     +CA       G  VH  V +    +D H+  +L+ MYA+C + 
Sbjct: 143 HADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERP 202

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           + AR+VFD + ER++VSWNS+I+ Y + G   EA+ LF  M    F PDE+TL SV+ +C
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSAC 262

Query: 231 GDLGDLVLGKWVEGFVVK-NKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------- 281
             L     G+ V   +VK +++  +  + +AL+DMY KCG    AR +FD+M        
Sbjct: 263 AGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSE 322

Query: 282 -----------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                                  V K+V+ WN +I AYAQNG   EAI LF ++K   + 
Sbjct: 323 TSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIW 382

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLR------HDIF-----------CGSI 361
           P   T   VL+AC +I  L LG+    +  + G R       D+F            GSI
Sbjct: 383 PTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 442

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM--SKEGGAARPNDVTFIGV 419
           DD  KVFE M   + VSWNAMI   A NGRA +AL LFERM  S E     P+ VT IGV
Sbjct: 443 DDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN----PDSVTMIGV 498

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H+GLVDEGRR F  M+   G+ P  +HY+CMVDL  RAGHL EA + +  MP + 
Sbjct: 499 LSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEP 558

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D ++  +LLGAC+  KN ++ +     L E++  NSG YV+ S ++A +  W +  ++R 
Sbjct: 559 DSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRR 618

Query: 540 LMREKGVSKTPGCSWIGI 557
            M+++GVSK PGCSWI I
Sbjct: 619 SMKDRGVSKQPGCSWIEI 636



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 139/287 (48%), Gaps = 9/287 (3%)

Query: 17  LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFH 76
           L D  +L   L+ +  KC  T   + I   M    I     +L       +   A ++F 
Sbjct: 284 LRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFS 343

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q+   N  A+NV+I       ++   +++L+ Q+KR  + P ++TY  V  +C N+  L 
Sbjct: 344 QMVEKNVIAWNVLIAAYAQNGEE-EEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQ 402

Query: 137 HGVSVHSSV------FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            G   H  V      F  G + D  V +SL+ MY + G +D   KVF+ +  RD VSWN+
Sbjct: 403 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 462

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKN 249
           MI GY++ G AK+A+ LF RM      PD +T++ VL +CG  G +  G ++       +
Sbjct: 463 MIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDH 522

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
            +  +    + ++D+ G+ G L  A  + + M +  D V W +++ A
Sbjct: 523 GITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGA 569


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/549 (36%), Positives = 316/549 (57%), Gaps = 34/549 (6%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-----LKDFNYASLLFHQISRP 81
           + +LLK C   + ++Q+H  ++   +++ +FL+   I      L   +YAS +FH++  P
Sbjct: 32  ITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAP 91

Query: 82  NEYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +   +N +I+   +  QK  +SH+L  + +MK  G  PD+FTYP V  +C+       G 
Sbjct: 92  STVLWNTLIK---SHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGK 148

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H S F+ G+D+D +V  SLI MY +CG++  ARKVFD + +R++VSW +M+ GY  +G
Sbjct: 149 SLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVG 208

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-EGFVVKNKMDLNFYMG 258
              EA +LF  M          +  S+L     +GDL   + V +    KN +       
Sbjct: 209 DVVEARKLFDEMPHRNV----ASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSF----- 259

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + +ID Y K G +  AR +FD  + KDVV W+A+I+ Y QNGL N+A+ +F  M+   V 
Sbjct: 260 TTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVK 319

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQR--GLRHDIF----------CGSIDDALK 366
           PD+  L+ ++SA A +G L+L +WVD Y S+    L+ D            CG+++ ALK
Sbjct: 320 PDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALK 379

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F++ P  + V + +MI  L+ +GR  EA+ LF RM  EG    P++V F  +L+AC  A
Sbjct: 380 LFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEG--LTPDEVAFTVILTACSRA 437

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLVDEGR  F  M   + + P  +HY+CMVDL +R+GH+ +A++ ++ +P +      GA
Sbjct: 438 GLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGA 497

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC+   ++++ + V   L E+E  N+ NYV+ S I+A  + W D + +R+ MRE+ V
Sbjct: 498 LLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRV 557

Query: 547 SKTPGCSWI 555
            K PG S I
Sbjct: 558 RKIPGSSKI 566


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 307/544 (56%), Gaps = 19/544 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LL L  +    K  ++IH  ++ N  +   F++  ++ L    +  + A  +F ++   +
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  ++ G          +L+L  QM+  G KPD+ T   +  + A++ AL  G S+H
Sbjct: 211 LVSWTTLVAGYAQNGHA-KRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIH 269

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
              F+ G +   +V+++L+ MY +CG    AR VF  +R + +VSWN+MI G ++ G ++
Sbjct: 270 GYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESE 329

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA   F +M +E  +P  +T++ VL +C +LGDL  G +V   + K K+D N  + ++LI
Sbjct: 330 EAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLI 389

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KC  +  A  +F+ +  K  VTWNAMI  YAQNG   EA+ LF  M+  G+  D  
Sbjct: 390 SMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCF 448

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL+GV++A A        KW+   A +  + +++F           CG+I  A K+F+ M
Sbjct: 449 TLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMM 508

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + ++WNAMI     +G   E L LF  M K  GA +PND+TF+ V+SAC H+G V+E
Sbjct: 509 QERHVITWNAMIDGYGTHGVGKETLDLFNEMQK--GAVKPNDITFLSVISACSHSGFVEE 566

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G  LF  M   + L P  +HYS MVDL  RAG L +AW+F++ MP K    VLGA+LGAC
Sbjct: 567 GLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGAC 626

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  KN ++ ++  Q L +++    G +V+ + I+A+  MWD  AK+R  M +KG+ KTPG
Sbjct: 627 KIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPG 686

Query: 552 CSWI 555
           CSW+
Sbjct: 687 CSWV 690



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 242/470 (51%), Gaps = 20/470 (4%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           R   + LL+ C S K + QI   ++ N     +    ++I L       + A+ +F  + 
Sbjct: 47  RHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVE 106

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
              +  +++M++G          +L  + +M    ++     Y  +   C   L L  G 
Sbjct: 107 LKLDVLYHIMLKGYAKN-SSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGR 165

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H  +   G + +  V  +++++YA+C ++D+A K+F+ ++ +DLVSW ++++GY++ G
Sbjct: 166 EIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNG 225

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +AK A++L  +M+E    PD +TLVS+L +  D+  L +G+ + G+  ++  +    + +
Sbjct: 226 HAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTN 285

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY KCG+   AR VF  M +K VV+WN MI   AQNG S EA   F +M   G  P
Sbjct: 286 ALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVP 345

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
            ++T++GVL ACA++G L+ G +V K   +  L  ++            C  +D A  +F
Sbjct: 346 TRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIF 405

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            ++  TN V+WNAMI   A NG   EAL LF  M  +G   + +  T +GV++A     +
Sbjct: 406 NNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQG--IKLDCFTLVGVITALADFSV 462

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + + +  L   +  +       + +VD+YA+ G +  A    + M E+
Sbjct: 463 NRQAKWIHGLAVRAC-MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQER 511


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 313/544 (57%), Gaps = 29/544 (5%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEY 84
           +LLK C +   + Q+H  ++   +++ +FL+ + I   +     +Y++ +F ++  P+ +
Sbjct: 34  ALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTF 93

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N ++ G     Q +   + LY +MKR    PD +T+P +   CA+   +  G+++H S
Sbjct: 94  LWNSLVSGYCAKLQ-FVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGS 152

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + + G+DED +V+ SL+ +Y + G +D ARKVFD + ER++VSW +MI GYS +G   EA
Sbjct: 153 ILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEA 212

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMGSALID 263
             LF  M E        +  +++G    +GD+    K  +    KN +       + +ID
Sbjct: 213 KRLFDLMPERNV----ASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSF-----TTMID 263

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
            Y K G ++ AR +F     +D++ W+A+I+ Y QNG  NEA+  F  M    V PDK  
Sbjct: 264 GYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFV 323

Query: 324 LIGVLSACASIGALDLGKWVDKYASQ-----RG-------LRHDIFCGSIDDALKVFEDM 371
           L  ++ AC+ +G LDL KWVD YA++     RG       +  +  CG+++ A+ +FE M
Sbjct: 324 LTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKM 383

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  + +S+ +++  L+ +G   +A+ LFERM  E     P+DV F  +L+AC  AGLVDE
Sbjct: 384 PKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGED--LTPDDVAFTVILTACSRAGLVDE 441

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G   F++M   + ++P  +HY+C+VDL +R+G L EA++ ++ +P +      GALLGAC
Sbjct: 442 GWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGAC 501

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   ++++++ V   L+EIE  N+GNYV+ S I+A    W D + +R  M E+G+ K PG
Sbjct: 502 KLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPG 561

Query: 552 CSWI 555
           CSWI
Sbjct: 562 CSWI 565


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/538 (38%), Positives = 291/538 (54%), Gaps = 56/538 (10%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A  LFH I  P++ ++N +I  L     + + +L     M       + +++     +CA
Sbjct: 845  ARALFHAIPDPDQCSYNAVIAALAQ-HSRGADALLFLAAMHADDFVLNAYSFASALSACA 903

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                   GV VH+ V K    +D ++  +L+ MYA+C   + AR+VF+ + ER++VSWNS
Sbjct: 904  AEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNS 963

Query: 191  MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-N 249
            +I+ Y + G   EA+ LF  M +  F+PDE+TL SV+ +C  L     G+ V   VVK +
Sbjct: 964  LITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSD 1023

Query: 250  KMDLNFYMGSALIDMYGKCGALVPARRVFD------------------------------ 279
            +   +  + +AL+DMY KCG    AR VFD                              
Sbjct: 1024 RFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVF 1083

Query: 280  -AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
              MV K+V+ WN +I AYAQNG   EA+ LF R+K   V P   T   VL+AC ++  L 
Sbjct: 1084 SQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQ 1143

Query: 339  LGKWVDKYASQRGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            LG+    +  + G R       D+F            GSIDD  KVFE M   + VSWNA
Sbjct: 1144 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 1203

Query: 382  MISALAFNGRAHEALLLFERM--SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
            MI   A NGRA +AL LFERM  SKE     P+ VT IGVLSAC H+GLV+EGRR F  M
Sbjct: 1204 MIVGHAQNGRAKDALHLFERMLCSKES----PDSVTMIGVLSACGHSGLVEEGRRYFRSM 1259

Query: 440  SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
            +   G+IP  +HY+CM+DL  RAGHL E  + ++ M  + D ++  +LLG+C+  KN ++
Sbjct: 1260 TEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEM 1319

Query: 500  SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
             +     L E++  NSG YV+ S ++A L  W D  ++R+ M+ +GVSK PGCSWI I
Sbjct: 1320 GEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEI 1377



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 259/529 (48%), Gaps = 53/529 (10%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNY----ASLLFHQISRPN 82
           +LS   +C      +Q+H  +     Q    L   ++D+    +    A   F  I  PN
Sbjct: 157 VLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPN 216

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++NV++R    A      ++ ++++M   G++P  +T     ++C +  AL  G  +H
Sbjct: 217 AISWNVIVRRYHLAGMG-DMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIH 275

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSA----------------------------- 173
           + V + G +   HV  S++ MYA+CG +D+A                             
Sbjct: 276 AFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIA 335

Query: 174 --RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
             ++VF+ ++ER+LVSWN+M++GY +      A+ LF +MR+E    D ITL SVL +C 
Sbjct: 336 DAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT 395

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR--VFDAMVNKDVVTW 289
            + D+  G+ V  F +K     +  + +AL+ MY KCG L  A R  +F+    +D  +W
Sbjct: 396 GILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSW 455

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           N++I+ Y ++ +S  A+    +M+ + V P++ T    L+ACA+I  L  G  +  Y  +
Sbjct: 456 NSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIR 514

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           +G   D             C   D ++++FE  P  + + WN+MI   A++G+    L L
Sbjct: 515 KGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDL 574

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F+ M K+G   + + VTF+G L +C+  G V  GR  F LM     +IP+ EHY CM++L
Sbjct: 575 FDEMQKQG--IKADSVTFLGALVSCISEGHVRLGRSYFTLMMDE-SIIPRIEHYECMIEL 631

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             + G + E  DFVE MP +    +   +   C++  N  + +R  + +
Sbjct: 632 LGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCI 680



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/446 (29%), Positives = 204/446 (45%), Gaps = 99/446 (22%)

Query: 158  HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF--------- 208
            ++L++ YAR G+L  AR+VFDEI   +  S+N+++S ++++G   +A  LF         
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 209  ----------------------GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
                                    M  ++F+ +  +  S L +C    D   G  V   V
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
             K+    + Y+GSAL+DMY KC     ARRVF+AM  +++V+WN++IT Y QNG   EA+
Sbjct: 919  SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEAL 978

Query: 307  MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYASQRGLRHDIF-------- 357
            +LF  M  AG  PD++TL  V+SACA + A   G+ V  +       R D+         
Sbjct: 979  VLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDM 1038

Query: 358  ---CG-------------------------------SIDDALKVFEDMPVTNEVSWNAMI 383
               CG                               +++DA  VF  M   N ++WN +I
Sbjct: 1039 YAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLI 1098

Query: 384  SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----------VHAGLVDEG 432
            +A A NG   EAL LF R+ +E  +  P   T+  VL+AC            H  ++ EG
Sbjct: 1099 AAYAQNGEEEEALRLFVRLKRE--SVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEG 1156

Query: 433  RRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-G 489
             R FD     FG  P+S+ +  + +VD+Y + G + +     ERM  + D +   A++ G
Sbjct: 1157 FR-FD-----FG--PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-DNVSWNAMIVG 1207

Query: 490  ACQKQKNTDVSQRVMQLLLEIESSNS 515
              Q  +  D      ++L   ES +S
Sbjct: 1208 HAQNGRAKDALHLFERMLCSKESPDS 1233



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 189/430 (43%), Gaps = 50/430 (11%)

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           I   A CG +  AR++FD +  RD  SWN++I+  S+ G+  EA+ LF  M      P +
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T+ SVL  C +  DL   + + G + K     N  +G+AL+D+YG C  L  ARR FD 
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           ++  + ++WN ++  Y   G+ + A+ +F RM  AGV P   T+   + AC    AL+ G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 341 KWVDKYASQRGLRHDIF------------------------------------------C 358
           + +  +  + G  H +                                           C
Sbjct: 272 RCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASC 331

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G I DA +VFE M   N VSWNAM++    +     ALLLF++M +E    R  D   +G
Sbjct: 332 GRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQE---TREFDAITLG 388

Query: 419 -VLSACVHAGLVDEGR-RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE-RM 475
            VLSAC   G++D G+       +   G        + +V +Y++ G L  A   +   M
Sbjct: 389 SVLSACT--GILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEM 446

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
             + D     +L+   ++   ++ +   +  +    + N   +  +    AN+ +     
Sbjct: 447 GSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGM 506

Query: 536 KMRALMREKG 545
           ++ A M  KG
Sbjct: 507 QIHAYMIRKG 516



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 213/485 (43%), Gaps = 54/485 (11%)

Query: 55  PNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
           P FL  R I+          A  LF  +   +  ++N +I   + A    S +L L+  M
Sbjct: 84  PTFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHP-SEALSLFSNM 142

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
             LG++P + T   V   CA  L L     +H  + K     +  +  +L+ +Y  C  L
Sbjct: 143 NSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLL 202

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
             AR+ FD+I E + +SWN ++  Y   G    AV++F RM      P   T+   + +C
Sbjct: 203 ADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC 262

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA---------LVP-------- 273
            D   L  G+ +  FV+++  + + ++ S+++DMY KCGA         L P        
Sbjct: 263 RDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMST 322

Query: 274 --------------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                         A+RVF+ M  +++V+WNAM+T Y ++     A++LF +M+      
Sbjct: 323 SIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREF 382

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRG-----------LRHDIFCGSIDDA--LK 366
           D ITL  VLSAC  I  +  G+ V  +A + G           +R    CG +  A  L 
Sbjct: 383 DAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL 442

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +FE     +  SWN++IS    +  +  AL    +M  E     PN  TF   L+AC + 
Sbjct: 443 LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE---VTPNQSTFSSALAACANI 499

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
            L+ +G ++   M    G        S ++D+Y +      +    E  P + D I+  +
Sbjct: 500 FLLKQGMQIHAYMIRK-GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNS 557

Query: 487 LLGAC 491
           ++  C
Sbjct: 558 MIFGC 562



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 167/357 (46%), Gaps = 15/357 (4%)

Query: 6    KAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
            + ++R +      +  +L   L+ +  KC  T+  + +  +M    +     L+      
Sbjct: 1014 QVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARS 1073

Query: 66   KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
             +   A ++F Q+   N  A+NV+I       ++   +L+L+ ++KR  + P ++TY  V
Sbjct: 1074 ANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEE-EEALRLFVRLKRESVWPTHYTYGNV 1132

Query: 126  FISCANLLALNHGVSVHSSV------FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
              +C N+  L  G   H  V      F  G + D  V +SL+ MY + G +D   KVF+ 
Sbjct: 1133 LNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER 1192

Query: 180  IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
            +  RD VSWN+MI G+++ G AK+A+ LF RM   +  PD +T++ VL +CG  G +  G
Sbjct: 1193 MAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEG 1252

Query: 240  -KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYA 297
             ++       + +  +    + +ID+ G+ G L     +   M +  D V W +++ +  
Sbjct: 1253 RRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCR 1312

Query: 298  QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
             +   N  +  +   K   ++P       +LS   +    +LGKW D +  +  ++H
Sbjct: 1313 LH--KNVEMGEWAAGKLFELDPRNSGPYVLLSNMYA----ELGKWADVFRVRSSMKH 1363



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
           V  +   R +     CGS+ DA ++F+ MP+ +  SWNA+I+A +  G   EAL LF  M
Sbjct: 83  VPTFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNM 142

Query: 403 SKEGGAARPNDVTFIGVLSACV 424
           +  G   RP D T   VLS C 
Sbjct: 143 NSLG--IRPKDATMASVLSCCA 162


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/430 (40%), Positives = 267/430 (62%), Gaps = 13/430 (3%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H    K+G +    VS++LI MYA CG+L  A+K+FD + +RDLVSWN++I GYS+  
Sbjct: 45  SIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYN 104

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             KE + LF  M       D +T+V ++ +C  LGD      +  ++ +N ++++ Y+G+
Sbjct: 105 KYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGN 164

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LIDMYG+ G L  AR++FD M  +DV++W +MIT Y+Q    ++A+ LF  M  A V P
Sbjct: 165 TLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKP 224

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           DK+T+  VLSACA +G LD+G  V  Y  + G++ DI+           CG ++ AL+VF
Sbjct: 225 DKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVF 284

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             M   + VSW ++IS LA NG A+ AL LF +M +EG   +P   TF+G+L AC HAGL
Sbjct: 285 HRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREG--VQPTHGTFVGILLACAHAGL 342

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G   F+ M S  GL+P  +HY C+VDL +R+G++ +A++F+++MP   D +V   LL
Sbjct: 343 VNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILL 402

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+   N  +++   + LLE++  +SGNYV+ S  +A +  WDD+ KMR LM +  V K
Sbjct: 403 SACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQK 462

Query: 549 TPGCSWIGID 558
             G S I +D
Sbjct: 463 PSGSSSIEVD 472



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 193/348 (55%), Gaps = 14/348 (4%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
             +A  +F  +   +  ++N +I G +  + KY   L+L+  M    +K D  T   + +
Sbjct: 75  LGFAQKMFDGMLDRDLVSWNTLICGYSQ-YNKYKEVLRLFDAMTAANIKADAVTMVKIIL 133

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +C++L       S+   + +  L+ D ++ ++LI MY R G L +ARK+FD + +RD++S
Sbjct: 134 ACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVIS 193

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W SMI+GYS+     +AV+LF  M   +  PD++T+ SVL +C  LG L +G  V  ++ 
Sbjct: 194 WTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIR 253

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           ++ +  + Y+G++LIDMY KCG +  A  VF  M +KD V+W ++I+  A NG +N A+ 
Sbjct: 254 RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALD 313

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGL----RH-----DIF 357
           LF++M   GV P   T +G+L ACA  G ++ G ++ +   S  GL    +H     D+ 
Sbjct: 314 LFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLL 373

Query: 358 --CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERM 402
              G+ID A +  + MP+  + V W  ++SA   +G    A +  +R+
Sbjct: 374 SRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRL 421


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/549 (34%), Positives = 306/549 (55%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +Q   Q+H+ +    I     +   ++DL     D   A ++F+   R 
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +N+M+          + S +L+ QM+  G++P+ FTYP +  +C     ++ G  +
Sbjct: 309 NVVLWNLMLVAFGQI-NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI 367

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS   K G + D +VS  LI MY++ G L+ AR+V + ++E+D+VSW SMI+GY +    
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           K+A+  F  M++    PD I L S +  C  +  +  G  +   +  +    +  + +AL
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNAL 487

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +++Y +CG +  A   F+ + +KD +TWN +++ +AQ+GL  EA+ +F RM  +GV  + 
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFED 370
            T +  LSA A++  +  GK +     + G   +             CGS +DA   F +
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   NEVSWN +I++ + +GR  EAL LF++M KEG   +PNDVTFIGVL+AC H GLV+
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEG--IKPNDVTFIGVLAACSHVGLVE 665

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F  MS  +G+ P+ +HY+C++D++ RAG L  A  F+E MP   D +V   LL A
Sbjct: 666 EGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSA 725

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN +V +   + LLE+E  +S +YV+ S  +A  + W +  ++R +MR++GV K P
Sbjct: 726 CKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEP 785

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 786 GRSWIEVKN 794



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 229/466 (49%), Gaps = 20/466 (4%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGL 93
           + V +IH + +   + K   +   +IDL   N     A  +F ++S  +  ++  M+ G 
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
                    +L LY QM R G+ P  +    V  SC        G  +H+  +K G   +
Sbjct: 119 AQNGLG-EEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V +++IT+Y RCG    A +VF ++  RD V++N++ISG+++ G+ + A+E+F  M+ 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD +T+ S+L +C  LGDL  G  +  ++ K  +  ++ M  +L+D+Y KCG +  
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A  +F++    +VV WN M+ A+ Q     ++  LF +M+ AG+ P++ T   +L  C  
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 334 IGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAM 382
              +DLG+ +   + + G   D++            G ++ A +V E +   + VSW +M
Sbjct: 358 TREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I+    +    +AL  F+ M K G    P+++     +S C     + +G ++   +  S
Sbjct: 418 IAGYVQHECCKDALAAFKEMQKCG--IWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G       ++ +V+LYAR G + EA+   E +  K DEI    L+
Sbjct: 476 -GYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/507 (38%), Positives = 291/507 (57%), Gaps = 23/507 (4%)

Query: 69   NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
            N A+  +  + + N +++N +I  L         +L+ +  +++LGL P   ++P    S
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSV-EALRAFSSLRKLGLIPTRSSFPCTIKS 1151

Query: 129  CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            C+ L  L  G   H   F  G + D  VS +LI MY++CG+L  AR +FDEI  R++VSW
Sbjct: 1152 CSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSW 1211

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEF-------LP-DEITLVSVLGSCGDLGDLVLGK 240
             SMI+GY +   A  A+ LF    EEE        +P D + +VSVL +C  +    + +
Sbjct: 1212 TSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 1271

Query: 241  WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
             V GFVVK   D +  +G+ L+D Y KCG  + +++VFD M  KD ++WN+MI  YAQ+G
Sbjct: 1272 GVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 1331

Query: 301  LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
            LS EA+ +F+ M ++ GV  + +TL  VL ACA  GAL  GK +     +  L +++   
Sbjct: 1332 LSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 1391

Query: 358  ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                     CG ++ A K F+ M   N  SW AM++    +GRA EAL +F +M + G  
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAG-- 1449

Query: 409  ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             +PN +TF+ VL+AC HAGLV+EG   F+ M   + + P  EHY CMVDL+ RAG L+EA
Sbjct: 1450 VKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEA 1509

Query: 469  WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
            ++ ++RM  K D +V G+LLGAC+  KN D+ +   Q L E++  N G YV+ S ++A+ 
Sbjct: 1510 YNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADA 1569

Query: 529  KMWDDSAKMRALMREKGVSKTPGCSWI 555
              W D  +MR LM+ + + K PG S +
Sbjct: 1570 GRWADVERMRMLMKNRQLVKPPGFSLV 1596



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 224/439 (51%), Gaps = 59/439 (13%)

Query: 11  HLAFTELNDPSLLR-----EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           H  F   N P   R     +K L LL+ C + K ++QIH +++ + +     L  ++I L
Sbjct: 9   HDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHL 68

Query: 66  KDFN----YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
              +    YA LLF+QI  P  + +N++IR  T        +L LY  M   G+  D FT
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS-EQALMLYKNMVCQGIAADKFT 127

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK------------ 169
           +PFV  +C N L+++ G  VH S+ K G   D  V ++LI  Y +CG             
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 187

Query: 170 -------------------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
                              L  AR++FDEI  +++VSW +MI+GY +    +EA+ELF R
Sbjct: 188 VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR 247

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           M+ E   P+E T+VS++ +C ++G L LG+ +  + +KN +++  Y+G+ALIDMY KCG+
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  A  VF+ M  K + TWN+MIT+   +GL  EA+ LF+ M+   V PD IT IGVL A
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 331 CASI-----GALDLGKWVDKYASQRGLRH-----DIFCGS--IDDALKVFEDMPVTNEVS 378
           C  I     G     +    Y       H     +++  S  +D+A K       T EV 
Sbjct: 368 CVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK------STKEVG 421

Query: 379 WNAMISALAFNGRAHEALL 397
             A   ++ F+ RA +A+L
Sbjct: 422 SLANSPSICFDARAKQAVL 440



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 199/388 (51%), Gaps = 47/388 (12%)

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           F+  +C N     H   +H+ + + GL  D  ++  LI +Y+  G++  A  +F +I+  
Sbjct: 32  FLLQNCKNF---KHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
              +WN +I   +  G +++A+ L+  M  +    D+ T   V+ +C +   + LGK V 
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGA-------------------------------LV 272
           G ++K     + ++ + LID Y KCG                                L 
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            ARR+FD + +K+VV+W AMI  Y +N    EA+ LF RM+   + P++ T++ ++ AC 
Sbjct: 209 EARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACT 268

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +G L LG+ +  YA +  +   ++           CGSI DA++VFE MP  +  +WN+
Sbjct: 269 EMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNS 328

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI++L  +G   EAL LF  M +     +P+ +TFIGVL ACVH   V EG   F  M+ 
Sbjct: 329 MITSLGVHGLGQEALNLFSEMERVN--VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            +G+ P  EHY CM +LYAR+ +L EA+
Sbjct: 387 HYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 48/295 (16%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L +C +   L   + +   ++++ +  +  +   LI +Y   G +  A  +F  + N  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
             TWN +I A   NGLS +A+ML+  M   G+  DK T   V+ AC +  ++DLGK V  
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 346 YASQRGLRHDIF------------------------------------------CGSIDD 363
              + G   D+F                                          CG + +
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A ++F+++P  N VSW AMI+    N +  EAL LF+RM  E     PN+ T + ++ AC
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN--IFPNEYTMVSLIKAC 267

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              G++  GR + D    +   I      + ++D+Y++ G + +A +  E MP K
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEI-GVYLGTALIDMYSKCGSIKDAIEVFETMPRK 321


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/549 (34%), Positives = 306/549 (55%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +Q   Q+H+ +    I     +   ++DL     D   A ++F+   R 
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +N+M+          + S +L+ QM+  G++P+ FTYP +  +C     ++ G  +
Sbjct: 309 NVVLWNLMLVAFGQI-NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI 367

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS   K G + D +VS  LI MY++ G L+ AR+V + ++E+D+VSW SMI+GY +    
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           K+A+  F  M++    PD I L S +  C  +  +  G  +   +  +    +  + +AL
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNAL 487

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +++Y +CG +  A   F+ + +KD +TWN +++ +AQ+GL  EA+ +F RM  +GV  + 
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T +  LSA A++  +  GK +     + G   +             CGS +DA   F +
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   NEVSWN +I++ + +GR  EAL LF++M KEG   +PNDVTFIGVL+AC H GLV+
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEG--IKPNDVTFIGVLAACSHVGLVE 665

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F  MS  +G+ P+ +HY+C++D++ RAG L  A  F+E MP   D +V   LL A
Sbjct: 666 EGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSA 725

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN +V +   + LLE+E  +S +YV+ S  +A  + W +  ++R +MR++GV K P
Sbjct: 726 CKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEP 785

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 786 GRSWIEVKN 794



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 229/466 (49%), Gaps = 20/466 (4%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGL 93
           + V +IH + +   + K   +   +IDL   N     A  +F ++S  +  ++  M+ G 
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
                    +L LY QM R G+ P  +    V  SC        G  +H+  +K G   +
Sbjct: 119 AQNGLG-EEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V +++IT+Y RCG    A +VF ++  RD V++N++ISG+++ G+ + A+E+F  M+ 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD +T+ S+L +C  LGDL  G  +  ++ K  +  ++ M  +L+D+Y KCG +  
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A  +F++    +VV WN M+ A+ Q     ++  LF +M+ AG+ P++ T   +L  C  
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 334 IGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAM 382
              +DLG+ +   + + G   D++            G ++ A +V E +   + VSW +M
Sbjct: 358 TREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I+    +    +AL  F+ M K G    P+++     +S C     + +G ++   +  S
Sbjct: 418 IAGYVQHECCKDALAAFKEMQKCG--IWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G       ++ +V+LYAR G + EA+   E +  K DEI    L+
Sbjct: 476 -GYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 289/525 (55%), Gaps = 58/525 (11%)

Query: 86  FNVMIRGLTTAWQKY---SHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +N   R L+    ++    H L LY  +      +PD+ T+PF+  +CA L    +G +V
Sbjct: 84  YNAAFRALSLCPHRHLVDRHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAV 143

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
              V K+G   D  V ++ +  ++  G +  AR++FDE   RD+VSWN++I GY + G  
Sbjct: 144 LGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLP 203

Query: 202 KEAVELFGRMREE--EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +EA+ELF R+ E+     PDE+T++  +  C  +GDL LGK +  FV    +     + +
Sbjct: 204 REALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMN 263

Query: 260 ALIDMYGKCGALV-------------------------------PARRVFDAMVNKDVVT 288
           A++DMY KCG+L                                 AR +FD M  +DV  
Sbjct: 264 AVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFP 323

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA++  Y QN    EAI LF+ M+ + V+P++IT++ +LSAC+ +GAL++G WV  Y  
Sbjct: 324 WNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYID 383

Query: 349 QRGLRHDIF---------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
               RH ++               CG+I  A+ +F+++P  N ++W AMI  LA +G A 
Sbjct: 384 ----RHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHAD 439

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           EA+  F+RM   G   +P+++TFIGVLSAC HAGLV EGR+ F LM   + L  K +HYS
Sbjct: 440 EAIEYFQRMIDLG--LQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYS 497

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CM+DL  RAGHL EA   V  MP   D +V GAL  AC+   N  + ++    L+E++ S
Sbjct: 498 CMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPS 557

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +SG YV+ + ++A   M   + K+R +MR  GV K PGCS I ++
Sbjct: 558 DSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 602


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 309/552 (55%), Gaps = 30/552 (5%)

Query: 30  LLKKCPSTKTVQQIHTQMLIN--FIQKPNFLLIRII---DLKDFNYASLLF--------H 76
           LL+ C S  T++ IH+ +      +  P+FL   II    L D + A  LF         
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHG 90

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
               PN +  N M+R    A + Y  ++ LY  M+R+G+  +NFTYPFV   CA+ L   
Sbjct: 91  HTQAPNSFLCNTMLRAYANAGRSYE-AIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  VH  V + G   D  V  +L+ MYA+CG++  A +VFD +  RD+V W +MI+ Y 
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +     +A+ LF +M+EE FL DEIT +SV  + G LGD  +   V G+ V N    +  
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVS 269

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G++++ MY KCG +  AR VFD M  ++ ++WN+M++ Y QNG   +A+ LFN+M+ + 
Sbjct: 270 VGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE 329

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKY---------ASQRGLRHDIF--CGSIDDAL 365
            +P+ +T + ++SAC+ +G+  LG+ +  +          + R    D++  CG +D A+
Sbjct: 330 CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV 389

Query: 366 KVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           ++F +  +      SWN +IS    +G   EAL LF RM  EG    PND+TF  +LSAC
Sbjct: 390 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEG--VEPNDITFTSILSAC 447

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            HAGL+DEGR+ F  M +   + P+ +HY+CMVD+  RAG L+EA+  ++++P +  + V
Sbjct: 448 SHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV 506

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            GALL AC+   NT++ +     L ++E  ++G YV+ S I+A    W +   +R  M+ 
Sbjct: 507 WGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKS 566

Query: 544 KGVSKTPGCSWI 555
           +G+ K    S I
Sbjct: 567 RGLKKPAAFSVI 578


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 311/580 (53%), Gaps = 57/580 (9%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL---LIRIIDLKDF-NY 70
           T+ +    ++ +L+ +  KC      +++  +M     Q+  F    LI ++    F + 
Sbjct: 44  TQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRM----PQRNTFTWNSLISVLTKSGFLDE 99

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+ LF  +  P++ ++N M+ G      ++  SL+ + +M R     + +++     +CA
Sbjct: 100 AARLFGSMPEPDQCSWNSMVSGFAQH-DRFEESLEYFVKMHREDFLLNEYSFGSALSACA 158

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L+ LN G  VH+ V K     D ++  +LI MY++CG +  A +VF  + ER+LV+WNS
Sbjct: 159 GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNS 218

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-N 249
           +I+ Y + G A EA+E+F RM +    PDE+TL SV+ +C  L  L  G  +   VVK N
Sbjct: 219 LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTN 278

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFD------------------------------ 279
           K   +  +G+AL+DMY KC  +  ARRVFD                              
Sbjct: 279 KFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMF 338

Query: 280 -AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             M  ++VV+WNA+I  Y QNG + EA+ LF  +K   + P   T   +L +   +G   
Sbjct: 339 SKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVG--- 395

Query: 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
               +D Y           CGSI+D  +VFE M   + VSWNA+I   A NG   EAL +
Sbjct: 396 -NSLIDMYMK---------CGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQI 445

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F +M   G   +P+ VT IGVL AC HAGLV+EGR  F  M    GLIP  +HY+CMVDL
Sbjct: 446 FRKMLVCG--EKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDL 502

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             RAG L+EA + +E MP   D +V G+LL AC+   N ++ +   + LLEI+  NSG Y
Sbjct: 503 LGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPY 562

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           V+ S ++A L  W D  ++R LMR++GV+K PGCSWI ++
Sbjct: 563 VLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVE 602


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/507 (38%), Positives = 291/507 (57%), Gaps = 23/507 (4%)

Query: 69   NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
            N A+  +  + + N +++N +I  L         +L+ +  +++LGL P   ++P    S
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVE-ALRAFSSLRKLGLIPTRSSFPCTIKS 2024

Query: 129  CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            C+ L  L  G   H   F  G + D  VS +LI MY++CG+L  AR +FDEI  R++VSW
Sbjct: 2025 CSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSW 2084

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEF-------LP-DEITLVSVLGSCGDLGDLVLGK 240
             SMI+GY +   A  A+ LF    EEE        +P D + +VSVL +C  +    + +
Sbjct: 2085 TSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 2144

Query: 241  WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
             V GFVVK   D +  +G+ L+D Y KCG  + +++VFD M  KD ++WN+MI  YAQ+G
Sbjct: 2145 GVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 2204

Query: 301  LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
            LS EA+ +F+ M ++ GV  + +TL  VL ACA  GAL  GK +     +  L +++   
Sbjct: 2205 LSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 2264

Query: 358  ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                     CG ++ A K F+ M   N  SW AM++    +GRA EAL +F +M + G  
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAG-- 2322

Query: 409  ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             +PN +TF+ VL+AC HAGLV+EG   F+ M   + + P  EHY CMVDL+ RAG L+EA
Sbjct: 2323 VKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEA 2382

Query: 469  WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
            ++ ++RM  K D +V G+LLGAC+  KN D+ +   Q L E++  N G YV+ S ++A+ 
Sbjct: 2383 YNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADA 2442

Query: 529  KMWDDSAKMRALMREKGVSKTPGCSWI 555
              W D  +MR LM+ + + K PG S +
Sbjct: 2443 GRWADVERMRMLMKNRQLVKPPGFSLV 2469



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 199/370 (53%), Gaps = 41/370 (11%)

Query: 11  HLAFTELNDPSLLR-----EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           H  F   N P   R     +K L LL+ C + K ++QIH +++ + +     L  ++I L
Sbjct: 9   HDVFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHL 68

Query: 66  KDFN----YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
              +    YA LLF+QI  P  + +N++IR  T        +L LY  M   G+  D FT
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS-EQALMLYKNMVCQGIAADKFT 127

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK------------ 169
           +PFV  +C N L+++ G  VH S+ K G   D  V ++LI  Y +CG             
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 187

Query: 170 -------------------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
                              L  AR++FDEI  +++VSW +MI+GY +    +EA+ELF R
Sbjct: 188 VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR 247

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           M+ E   P+E T+VS++ +C ++G L LG+ +  + +KN +++  Y+G+ALIDMY KCG+
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  A  VF+ M  K + TWN+MIT+   +GL  EA+ LF+ M+   V PD IT IGVL A
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 331 CASIGALDLG 340
           C  I  +  G
Sbjct: 368 CVHIKNVKEG 377



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 199/388 (51%), Gaps = 47/388 (12%)

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           F+  +C N     H   +H+ + + GL  D  ++  LI +Y+  G++  A  +F +I+  
Sbjct: 32  FLLQNCKNF---KHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
              +WN +I   +  G +++A+ L+  M  +    D+ T   V+ +C +   + LGK V 
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGA-------------------------------LV 272
           G ++K     + ++ + LID Y KCG                                L 
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            ARR+FD + +K+VV+W AMI  Y +N    EA+ LF RM+   + P++ T++ ++ AC 
Sbjct: 209 EARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACT 268

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +G L LG+ +  YA +  +   ++           CGSI DA++VFE MP  +  +WN+
Sbjct: 269 EMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNS 328

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI++L  +G   EAL LF  M +     +P+ +TFIGVL ACVH   V EG   F  M+ 
Sbjct: 329 MITSLGVHGLGQEALNLFSEMERVN--VKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            +G+ P  EHY CM +LYAR+ +L EA+
Sbjct: 387 HYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 132/298 (44%), Gaps = 54/298 (18%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L +C +   L   + +   ++++ +  +  +   LI +Y   G +  A  +F  + N  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
             TWN +I A   NGLS +A+ML+  M   G+  DK T   V+ AC +  ++DLGK V  
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 346 YASQRGLRHDIF------------------------------------------CGSIDD 363
              + G   D+F                                          CG + +
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A ++F+++P  N VSW AMI+    N +  EAL LF+RM  E     PN+ T + ++ AC
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN--IFPNEYTMVSLIKAC 267

Query: 424 VHAGLVDEGRRLFDLMSSS---FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              G++  GR + D    +    G+   +     ++D+Y++ G + +A +  E MP K
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEIGVYLGT----ALIDMYSKCGSIKDAIEVFETMPRK 321



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 9/162 (5%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           ++SL+K C     +   + IH   + N I+   +L   +ID+         A  +F  + 
Sbjct: 260 MVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP 319

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           R +   +N MI  L         +L L+ +M+R+ +KPD  T+  V  +C ++  +  G 
Sbjct: 320 RKSLPTWNSMITSLGVHGLG-QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 140 SVHSSVFK-IGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           +  + + +  G+         +  +YAR   LD A K   E+
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/518 (37%), Positives = 289/518 (55%), Gaps = 48/518 (9%)

Query: 86  FNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           +N  +R L+    +   +  L LY  + R   +PD+ T+PF+  +CA L   N+G +V  
Sbjct: 86  YNAALRALSLCTDRGLVTRCLPLYCSLLR-SARPDHLTFPFLLKACARLQERNYGNAVLG 144

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
           +V  +G   D  V ++ +   A C  +  ARK+FD    RDLVSWN++I GY + G  +E
Sbjct: 145 NVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPRE 204

Query: 204 AVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           A+E+F RM  +    PDE+T++ V+     L DL LG+ + G+V  + +     + + ++
Sbjct: 205 ALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVM 264

Query: 263 DMYGKCGALV-------------------------------PARRVFDAMVNKDVVTWNA 291
           DMY KCG L                                 AR+VFD M  +DV  WNA
Sbjct: 265 DMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNA 324

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           ++T Y Q     EA+ LF+ M+ A V PD IT++ +LSAC+ +GAL++G WV  Y  +R 
Sbjct: 325 LMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRR 384

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +   +            CG+I+ A++VF+++P  N ++W AMIS LA +G A  A+  F+
Sbjct: 385 VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQ 444

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
           RM + G   +P+++TFIGVLSAC HAGLV EG+  F LM S + L  K +HYSCMVDL  
Sbjct: 445 RMIELG--LQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLG 502

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG+L EA   V  MP + D +V GAL  AC+   N  + ++    L+E++  +SG YV+
Sbjct: 503 RAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVL 562

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            + ++A   M   + K+R +MR  GV K PGCS I ++
Sbjct: 563 LANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 600


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/500 (38%), Positives = 291/500 (58%), Gaps = 15/500 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A L+F ++   NE ++  M+ G   A +    + +L+ QM     L  + F    V  + 
Sbjct: 172 AQLVFDEMPHRNEVSWAAMVAGYA-ARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAI 230

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L L  GV VH  V K G+     V +SL+TMYA+ G +D+A  VF+  +ER+ ++W+
Sbjct: 231 SVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWS 290

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GYS+ G A+ AV +F +M    F P E TLV VL +C D+G L+ GK   G +VK 
Sbjct: 291 AMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKL 350

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             ++  Y+ SAL+DMY KCG +  A+  F+     D+V W AM+T + QNG   +A+ML+
Sbjct: 351 GFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLY 410

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY---------ASQRGLRHDIF--C 358
            RM   GV P+ +T+  +L ACA + AL+ GK +            AS       ++  C
Sbjct: 411 ARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKC 470

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G+++D + VF  MP  + ++WN++IS  + NGR ++A+ LFE M  EG A  P+ VTFI 
Sbjct: 471 GNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTA--PDPVTFIN 528

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC H GLVD G   F  M   +GL P+ +HY+CMVD+ +RAG LSEA DF+E +   
Sbjct: 529 VLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESITID 588

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +   +LGAC+  ++ DV     + L+++ + +S  Y++ S I+A  + W+D  ++R
Sbjct: 589 HGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAAQRKWNDVERVR 648

Query: 539 ALMREKGVSKTPGCSWIGID 558
            LM+  GVSK PGCSW+ ++
Sbjct: 649 YLMKLVGVSKDPGCSWVELN 668



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 195/378 (51%), Gaps = 19/378 (5%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           VS +L+ MY + G +  A+ VFDE+  R+ VSW +M++GY+    ++EA ELF +M  E 
Sbjct: 155 VSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGEC 214

Query: 216 FL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
            L  +E    +VL +      L +G  V G VVK+ M     + ++L+ MY K G +  A
Sbjct: 215 PLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAA 274

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
             VF++   ++ +TW+AMIT Y+QNG +  A+ +F++M  AG  P + TL+GVL+AC+ +
Sbjct: 275 FHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDV 334

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
           G L  GK       + G    ++           CG I DA + F      + V W AM+
Sbjct: 335 GTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMV 394

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSS 442
           +    NG   +AL+L+ RM KEG    PN +T   +L AC     ++ G++L   ++   
Sbjct: 395 TGHVQNGEFEQALMLYARMDKEG--VFPNTLTITSLLRACAGLAALEPGKQLHTQILKFG 452

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQ 501
           FGL   +   S +  +Y++ G+L +      RMP + D I   +++ G  Q  +  D   
Sbjct: 453 FGL--GASVGSALSTMYSKCGNLEDGMVVFRRMPHR-DVIAWNSIISGFSQNGRGNDAIN 509

Query: 502 RVMQLLLEIESSNSGNYV 519
              ++ LE  + +   ++
Sbjct: 510 LFEEMKLEGTAPDPVTFI 527



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 20/357 (5%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEI--RERDLVSWNSMIS 193
           G ++H+   K G      VS+SLIT Y+   +  L +A  VF +I    RD+ SWNS+++
Sbjct: 31  GEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLN 90

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMD 252
             S              +     LP   +  +   +         G  V     K     
Sbjct: 91  PLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSAS 150

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            N ++ +AL++MY K G +  A+ VFD M +++ V+W AM+  YA    S EA  LF +M
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210

Query: 313 -KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
                ++ ++     VLSA +    L +G  V     + G+   +             G 
Sbjct: 211 LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGC 270

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +D A  VFE     N ++W+AMI+  + NG A  A+ +F +M   G    P + T +GVL
Sbjct: 271 MDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFP--PTEFTLVGVL 328

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           +AC   G + EG++   LM    G   +    S +VD+YA+ G + +A +   +  E
Sbjct: 329 NACSDVGTLMEGKQAHGLM-VKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSE 384


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 202/555 (36%), Positives = 315/555 (56%), Gaps = 31/555 (5%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLIN----FIQKPNFLLIRIIDLKDF-NYAS 72
           N PS    ++LSL   C + + ++Q+H Q++ +    F       L  +     F  YA 
Sbjct: 92  NPPS--NPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAK 149

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
            +FH +  P    +N +IR L+++ +    +L LY+ M + GLKPD+ TYPFV  +C   
Sbjct: 150 TIFHHLQNPPPSLYNSLIRALSSS-KTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNES 208

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
                G+ VH+ V K G + D ++  SLI +YA    L +A+++F+    RD+VSWN+MI
Sbjct: 209 SVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMI 268

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM- 251
            GY K      A  +F RM       D I+  +++      G  ++GK  E   + ++M 
Sbjct: 269 DGYVKHVEMGHARMVFDRM----VCRDVISWNTMIN-----GYAIVGKIDEAKRLFDEMP 319

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           + N    ++++  + KCG +  A  +F  M  +DVV+WN+M+  YAQ G  NEA+ LF++
Sbjct: 320 ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 379

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGS 360
           M+  GV P + T++ +LSACA +GALD G  +  Y +   +           D++  CG 
Sbjct: 380 MRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGK 439

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I  A +VF  M   + ++WN +I+ +A +G   EA  LF+ M + G    PND+TF+ +L
Sbjct: 440 ISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAG--VEPNDITFVAIL 497

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC HAG+VDEG++L D MSSS+G+ PK EHY C++DL ARAG L EA + +  MP + +
Sbjct: 498 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPN 557

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
              LGALLG C+   N ++ + V + L+ ++  +SG Y++ S I+A  K WDD+ K+R L
Sbjct: 558 PSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 617

Query: 541 MREKGVSKTPGCSWI 555
           M+  G+SK PG S I
Sbjct: 618 MKVNGISKVPGVSVI 632


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 197/550 (35%), Positives = 296/550 (53%), Gaps = 59/550 (10%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-----LKDFNYASLLFHQISR 80
           K LS L+ C ST+ +++IH Q++I    K  F+  + ++      ++ +YA  +F  I+ 
Sbjct: 29  KTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINY 88

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ Y++  MIRG   A +    +L+ Y  M++ G++ + FT+ FV  +     +   G  
Sbjct: 89  PDSYSWTTMIRGFVEA-KNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRI 147

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH  + K+G   D    ++LI MY +CG +  A  +FDE+   ++V+WN+MI+G    G 
Sbjct: 148 VHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGD 207

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            + A  LFG M E                        +G W                 +A
Sbjct: 208 TERARRLFGEMPERN----------------------VGSW-----------------NA 228

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           ++  Y K G +  AR +FD M  +DVV+W +MI+AY QNG + EA+ LF  M  AGV+ D
Sbjct: 229 VVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSAD 288

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
            I +  +LSACA IGALD+G+W+  Y  +  LR+D+F           CG ID A  VF 
Sbjct: 289 SIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFN 348

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            MP  N  SWNAM+S LA +G    AL LF++M   G    PND+TF+ VLSAC H G V
Sbjct: 349 TMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTG--VGPNDITFVAVLSACSHIGSV 406

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           +EG + F+ M   F + PK EHY CMVD+  R G ++EA + +  MP + + ++ GALL 
Sbjct: 407 EEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLN 466

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS-K 548
           AC+    T+V + V+  + ++ S + G YV+ S IFA    W++  K R +M++ GV  K
Sbjct: 467 ACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKK 526

Query: 549 TPGCSWIGID 558
            PG S I +D
Sbjct: 527 IPGYSSIELD 536


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 198/586 (33%), Positives = 319/586 (54%), Gaps = 52/586 (8%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           + ++ +L+ +  KC      +++  +ML   I   N ++         + A  +F ++ +
Sbjct: 54  TFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQ 113

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            ++ ++N MI G      ++  +L  + QM   G   + +++     +CA L  L  G  
Sbjct: 114 VDQCSWNSMISGFEQH-GRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQ 172

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +HS V++     D ++  +L+ MY++CG+++ A+ VFDE+  R  VSWNS+I+ Y + G 
Sbjct: 173 IHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGP 232

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGS 259
             EA+++F  M +    PDE+TL SV+ +C  +  +  G+ +   VVK ++   +  +G+
Sbjct: 233 VDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGN 292

Query: 260 ALIDMYGKCGALVPARRVFDAM-------------------------------VNKDVVT 288
           AL+DMY KC  +  AR +FD M                               + KDV+T
Sbjct: 293 ALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVIT 352

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+I    QNG + EA++LF  +K   V P   T   +L+ACA++  L LG+    +  
Sbjct: 353 WNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVL 412

Query: 349 QRGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           + G R       D+F           CGS+++  +VF+ M   + VSWNAMI   A NG 
Sbjct: 413 KHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGF 472

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
            ++AL +F +M + G A  P+ VT IGVL AC HAGL+DEGR  F  M++  GL+P  +H
Sbjct: 473 GNKALEVFCKMLESGEA--PDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDH 530

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y+CMVDL  RAG+L EA + +E M  + D IV G+LL AC+  +N  + + V++ LLE++
Sbjct: 531 YTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVD 590

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
             NSG YV+ S ++A  + W +  ++R LMR++GV K PGCSWI I
Sbjct: 591 PENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEI 636



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 203/440 (46%), Gaps = 81/440 (18%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D+  +  +   CA   +      VH+ + K     +  + + LI +Y +CG +D ARK+F
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE---------------------- 215
           D + ER++ SWNS+I  ++K G+  +AV +F +M + +                      
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 216 ---------FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
                    FL +E +  S L +C  L DL LG  +   V ++    + YMGSAL+DMY 
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           KCG +  A+ VFD M  +  V+WN++IT Y QNG  +EA+ +F  M   GV PD++TL  
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257

Query: 327 VLSACASIGALDLGKWVD-KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
           V+SACA+I A+  G+ +  +       R+D+            C  I++A  +F+ MP+ 
Sbjct: 258 VVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIR 317

Query: 375 NEVS-------------------------------WNAMISALAFNGRAHEALLLFERMS 403
           + VS                               WNA+I+    NG   EAL+LF  + 
Sbjct: 318 SVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLK 377

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM---SSSFGLIPKSEHY--SCMVDL 458
           +E  +  P   TF  +L+AC +   +  GR+    +      F     S+ +  + ++D+
Sbjct: 378 RE--SVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDM 435

Query: 459 YARAGHLSEAWDFVERMPEK 478
           Y + G +       + M EK
Sbjct: 436 YMKCGSVENGCRVFQHMLEK 455


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 313/561 (55%), Gaps = 33/561 (5%)

Query: 26  KLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQ- 77
           K ++ L+ C   + +   +Q+H+ M+          +  +I++         A L+F+  
Sbjct: 13  KCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDP 72

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
               N +A+N +I G  +     S   + Y +M+  G+ PD +T+P V  +C  ++ +  
Sbjct: 73  CHERNVFAYNAIISGFVSNGLA-SKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK- 130

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
              +H  + K+GL+ D  V  +L+  Y + G ++ A+KVF E+  RD+V WN+MI+GY+K
Sbjct: 131 --KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAK 188

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           +G   EA+E+F RM  +   P   T+  +L      GDL  GK V G V+K   D    +
Sbjct: 189 IGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSV 248

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +ALIDMYGKC  +  A  +F+ +  KD+ +WN++I+ + Q G  +  + LF++M  +G+
Sbjct: 249 SNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGI 308

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-------------------IFC 358
            PD +T+  VL AC+ + AL  G+ +  Y    GL  D                     C
Sbjct: 309 LPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKC 368

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS+++ALK+F+ M   +  SWN MI     +G A EAL +F +M +     +PN+VT +G
Sbjct: 369 GSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCE--AEFKPNEVTLVG 426

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSAC HAG V  GR     M S+FG+IP  EHY+C++D+  RAGHL +A++ V++MP +
Sbjct: 427 VLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQ 486

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + +V  ALLGAC+   N ++++   + +L++E  + G+YV+ S ++  +  +++  ++R
Sbjct: 487 ANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVR 546

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
             M+E+ V KTPGCSWI + D
Sbjct: 547 KTMKEQNVKKTPGCSWIELKD 567



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 200/382 (52%), Gaps = 27/382 (7%)

Query: 118 DNFTYPFVFI-SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           +N T    F+ SCA+   LN G  +HS +   G         SLI MY++CG++  A  V
Sbjct: 9   NNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILV 68

Query: 177 F-DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           F D   ER++ ++N++ISG+   G A +  + + +MR E  +PD+ T   V+ +C ++ +
Sbjct: 69  FYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVME 128

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           +   K + G ++K  ++L+ ++GSAL++ Y K G++  A++VF  +  +DVV WNAMI  
Sbjct: 129 V---KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMING 185

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH- 354
           YA+ G  +EA+ +F RM   GV P + T+ G+LS  AS G LD GK V     + G    
Sbjct: 186 YAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSG 245

Query: 355 --------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                   D++  C  I DAL +FE +   +  SWN++IS     G     L LF++M  
Sbjct: 246 VSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKML- 304

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH--------YSCMV 456
            G    P+ VT   VL AC H   +  GR +   M  + GL    E+         + ++
Sbjct: 305 -GSGILPDLVTITTVLPACSHLAALMHGREIHGYMIIN-GLGKDDENGAVDNLLVSNAVM 362

Query: 457 DLYARAGHLSEAWDFVERMPEK 478
           D+YA+ G ++ A    + M +K
Sbjct: 363 DMYAKCGSMNNALKIFDSMSKK 384


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 182/459 (39%), Positives = 274/459 (59%), Gaps = 15/459 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R G  P+ FT+PF   SCA L     G  +H  VFK G   +  V  SLI+MY +C  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 170 LDSARKVFDE-IRERDL-VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           +D+ARK+FDE  + R L V +NS++SGY+     K+ V LF  MRE     + +T++ ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
             CG  G+L LG  V GF VK  +D++  +G+ L+ MY K G +   R++FD M  K ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           TWNAMI  YAQNGL+N  + L+  M+  G  PD +TL+GVLS+CA +GAL +GK V++  
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              G   + F           CG++  A  +F+ MPV + VSW A+I     +G+   A+
Sbjct: 241 EGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAV 300

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LF+ M +  G  +P+   F+ VLSAC HAGL ++G   F +M   +GL P +EHYSCMV
Sbjct: 301 GLFDEMIR--GGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMV 358

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL  RAG L+EA + +E M  + D  + GALLGAC+  +N ++++   + ++E+E +N+G
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTG 418

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            YV+ S ++      +   ++R LMR++ + K PGCS++
Sbjct: 419 YYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYV 457



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 13/310 (4%)

Query: 106 LYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165
           L+ +M+ LG++ +  T   +   C     L  G+ VH    K GLD D  V + L+TMY 
Sbjct: 100 LFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYV 159

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           + G++D  RK+FDE+  + L++WN+MI+GY++ G A   +EL+  M  + F PD +TLV 
Sbjct: 160 KSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVG 219

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           VL SC  LG L +GK VE  +       N ++ +AL++MY +CG L  AR +FD M  K 
Sbjct: 220 VLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKS 279

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG----ALD-LG 340
           VV+W A+I  Y  +G    A+ LF+ M   G+ PD    + VLSAC+  G     LD  G
Sbjct: 280 VVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFG 339

Query: 341 KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRA 392
               KY  + G  H     D+    G +++A ++ E M V  + + W A++ A   +   
Sbjct: 340 VMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNV 399

Query: 393 HEALLLFERM 402
             A L FE++
Sbjct: 400 ELAELAFEQV 409



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 11/246 (4%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL   +   + +    LF ++ R     +N MI G        ++ L+LY +M+  G 
Sbjct: 152 NCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLA-NNVLELYKEMESKGF 210

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            PD  T   V  SCA+L AL+ G  V   +   G   +  ++++L+ MYARCG L  AR 
Sbjct: 211 CPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARD 270

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           +FD +  + +VSW ++I GY   G  + AV LF  M      PD    VSVL +C   G 
Sbjct: 271 IFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAG- 329

Query: 236 LVLGKWVEGF-VVKNKMDL----NFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTW 289
            +  K ++ F V++ K  L      Y  S ++D+ G+ G L  AR + ++M V  D   W
Sbjct: 330 -LTNKGLDYFGVMERKYGLRPGAEHY--SCMVDLLGRAGRLNEARELIESMQVRADGALW 386

Query: 290 NAMITA 295
            A++ A
Sbjct: 387 GALLGA 392


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 304/554 (54%), Gaps = 21/554 (3%)

Query: 24   REKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
            R   L LL  C ++      + IH  +L + I+    L   ++++         A  +F 
Sbjct: 486  RVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFE 545

Query: 77   QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
                 +  ++N MI G       Y  + KL+ +MK+ GL+PD  T+  V + C N  AL 
Sbjct: 546  GTRARDIISWNSMIAG-HAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALE 604

Query: 137  HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
             G  +H  + + GL  D ++ ++LI MY RCG L  A +VF  +R R+++SW +MI G++
Sbjct: 605  LGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFA 664

Query: 197  KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
              G  ++A ELF +M+ + F P + T  S+L +C     L  GK V   ++ +  +L+  
Sbjct: 665  DQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG 724

Query: 257  MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            +G+ALI  Y K G++  AR+VFD M N+D+++WN MI  YAQNGL   A+    +M+  G
Sbjct: 725  VGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQG 784

Query: 317  VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
            V  +K + + +L+AC+S  AL+ GK V     +R ++ D+            CGS+++A 
Sbjct: 785  VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQ 844

Query: 366  KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +VF++    N V+WNAMI+A A +G A +AL  F  M KEG   +P+  TF  +LSAC H
Sbjct: 845  EVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEG--IKPDGSTFTSILSACNH 902

Query: 426  AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            +GLV EG R+F  + S  GL P  EHY C+V L  RAG   EA   + +MP   D  V  
Sbjct: 903  SGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWE 962

Query: 486  ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
             LLGAC+   N  +++      L++ + N   YV+ S ++A    WDD AK+R +M  +G
Sbjct: 963  TLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRG 1022

Query: 546  VSKTPGCSWIGIDD 559
            + K PG SWI +D+
Sbjct: 1023 IRKEPGRSWIEVDN 1036



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 229/405 (56%), Gaps = 17/405 (4%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N +I  L      Y  + + YYQM+  G+  +  TY  V  +C+   AL  G  +HS +
Sbjct: 353 YNALIAALAQHGH-YEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            ++G   D  + +SLI+MYARCG L  AR++F+ + +RDL+SWN++I+GY++     EA+
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           +L+ +M+ E   P  +T + +L +C +      GK +   ++++ +  N ++ +AL++MY
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            +CG+++ A+ VF+    +D+++WN+MI  +AQ+G    A  LF  MK  G+ PDKIT  
Sbjct: 532 RRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFA 591

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVT 374
            VL  C +  AL+LG+ +     + GL+ D           I CGS+ DA +VF  +   
Sbjct: 592 SVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR 651

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           N +SW AMI   A  G   +A  LF +M  +G   +P   TF  +L AC+ +  +DEG++
Sbjct: 652 NVMSWTAMIGGFADQGEDRKAFELFWQMQNDG--FKPVKSTFSSILKACMSSACLDEGKK 709

Query: 435 LF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +   +++S + L   +   + ++  Y+++G +++A    ++MP +
Sbjct: 710 VIAHILNSGYEL--DTGVGNALISAYSKSGSMTDARKVFDKMPNR 752



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 247/470 (52%), Gaps = 26/470 (5%)

Query: 24  REKLLSLLKKCPSTKTV---QQIHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFH 76
           R   + L++ C   +++   ++IH QM+   +       N L+   +  +  + A  +F 
Sbjct: 82  RAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFL 141

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           ++ R +  ++N +I     A Q +   + +L+ +M+  G  P   TY  +  +C +   L
Sbjct: 142 KMPRRDVISWNSLIS--CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAEL 199

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
            +G  +HS + + G   D  V +SL+ MY +C  L SAR+VF  I  RD+VS+N+M+  Y
Sbjct: 200 EYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLY 259

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           ++  Y +E + LFG+M  E   PD++T +++L +      L  GK +    V   ++ + 
Sbjct: 260 AQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDI 319

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            +G+AL  M+ +CG +  A++  +A  ++DVV +NA+I A AQ+G   EA   + +M+  
Sbjct: 320 RVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSD 379

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDA 364
           GV  ++ T + VL+AC++  AL  G+ +  + S+ G   D+            CG +  A
Sbjct: 380 GVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRA 439

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F  MP  + +SWNA+I+  A      EA+ L+++M  EG   +P  VTF+ +LSAC 
Sbjct: 440 RELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG--VKPGRVTFLHLLSACT 497

Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           ++    +G+ +  D++ S  G+       + ++++Y R G + EA +  E
Sbjct: 498 NSSAYSDGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSIMEAQNVFE 545


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 288/496 (58%), Gaps = 15/496 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F  +   N  ++  MI G      +   +   + +M   G++P+  T+  +  +C++  
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQH-GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPS 427

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +   + + G   DD V  +L++MYA+CG L  A +VF++I ++++V+WN+MI+
Sbjct: 428 ALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMIT 487

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y +      A+  F  + +E   P+  T  S+L  C     L LGKWV   ++K  ++ 
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLES 547

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++ +AL+ M+  CG L+ A+ +F+ M  +D+V+WN +I  + Q+G +  A   F  M+
Sbjct: 548 DLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ 607

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PDKIT  G+L+ACAS  AL  G+ +    ++     D+            CGSI+
Sbjct: 608 ESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIE 667

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA +VF  +P  N  SW +MI+  A +GR  EAL LF +M +EG   +P+ +TF+G LSA
Sbjct: 668 DAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEG--VKPDWITFVGALSA 725

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGL++EG   F  M   F + P+ EHY CMVDL+ RAG L+EA +F+ +M  + D  
Sbjct: 726 CAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSR 784

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V GALLGACQ   N +++++  Q  LE++ +++G +VI S I+A   MW + AKMR +M 
Sbjct: 785 VWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVML 844

Query: 543 EKGVSKTPGCSWIGID 558
           ++GV K PG SWI +D
Sbjct: 845 DRGVVKKPGQSWIEVD 860



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/562 (29%), Positives = 283/562 (50%), Gaps = 57/562 (10%)

Query: 2   LLRAKAYSRHLAFTELNDPS---LLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKP 55
           L +A  ++  +   E  D S   + R+   +LL+ C   K +   ++I+  +  + +Q  
Sbjct: 85  LSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPD 144

Query: 56  NFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
            F+   +I++     +   A  +F  +   + Y++N+++ G       Y  + KL+ QM 
Sbjct: 145 IFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH-GLYEEAFKLHEQMV 203

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
           +  +KPD  T+  +  +CA+   ++ G  +++ + K G D D  V  +LI M+ +CG + 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            A KVFD +  RDLV+W SMI+G ++ G  K+A  LF RM EE   PD++  VS+L +C 
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
               L  GK V   + +   D   Y+G+A++ MY KCG++  A  VFD +  ++VV+W A
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MI  +AQ+G  +EA + FN+M  +G+ P+++T + +L AC+S  AL  G+ +  +  + G
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 352 LRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
              D             CGS+ DA +VFE +   N V+WNAMI+A   + +   AL  F+
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF------------------------ 436
            + KEG   +PN  TF  +L+ C  +  ++ G+ +                         
Sbjct: 504 ALLKEG--IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN 561

Query: 437 --DLMSSS--FGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGAL 487
             DLMS+   F  +PK +   ++ ++  + + G    A+D+ + M E   K D+I    L
Sbjct: 562 CGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 488 LGACQKQKNTDVSQRVMQLLLE 509
           L AC   +     +R+  L+ E
Sbjct: 622 LNACASPEALTEGRRLHALITE 643



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 203/369 (55%), Gaps = 20/369 (5%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           LKD   A  +F +IS+ N  A+N MI       ++Y ++L  +  + + G+KP++ T+  
Sbjct: 464 LKD---AHRVFEKISKQNVVAWNAMITAYVQH-EQYDNALATFQALLKEGIKPNSSTFTS 519

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +   C +  +L  G  VH  + K GL+ D HVS++L++M+  CG L SA+ +F+++ +RD
Sbjct: 520 ILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD 579

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           LVSWN++I+G+ + G  + A + F  M+E    PD+IT   +L +C     L  G+ +  
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            + +   D +  +G+ LI MY KCG++  A +VF  +  K+V +W +MI  YAQ+G   E
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG----KWVDKYASQRGLRH-----D 355
           A+ LF +M+  GV PD IT +G LSACA  G ++ G    + + ++  +  + H     D
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVD 759

Query: 356 IF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           +F   G +++A++    M V  +   W A++ A     + H  + L E+ +++     PN
Sbjct: 760 LFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC----QVHLNVELAEKAAQKKLELDPN 815

Query: 413 DVTFIGVLS 421
           D     +LS
Sbjct: 816 DNGVFVILS 824



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 48/378 (12%)

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF +I+  D    N++++  SK G   EA+++  R+          T  ++L  C    +
Sbjct: 68  VFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G+ +   + K+ +  + +M + LI+MY KCG  + A+++FD M  KDV +WN ++  
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y Q+GL  EA  L  +M    V PDK T + +L+ACA    +D G+ +     + G   D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +F           CG I DA KVF+++P  + V+W +MI+ LA +GR  +A  LF+RM +
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS------------------------ 440
           EG   +P+ V F+ +L AC H   +++G+++   M                         
Sbjct: 306 EG--VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSM 363

Query: 441 ----SSFGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGAC 491
                 F L+       ++ M+  +A+ G + EA+ F  +M E   + + +   ++LGAC
Sbjct: 364 EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 492 QKQKNTDVSQRVMQLLLE 509
                    Q++   ++E
Sbjct: 424 SSPSALKRGQQIQDHIIE 441


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 288/496 (58%), Gaps = 15/496 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F  +   N  ++  MI G      +   +   + +M   G++P+  T+  +  +C++  
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQH-GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPS 427

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +   + + G   DD V  +L++MYA+CG L  A +VF++I ++++V+WN+MI+
Sbjct: 428 ALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMIT 487

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y +      A+  F  + +E   P+  T  S+L  C     L LGKWV   ++K  ++ 
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLES 547

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++ +AL+ M+  CG L+ A+ +F+ M  +D+V+WN +I  + Q+G +  A   F  M+
Sbjct: 548 DLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ 607

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PDKIT  G+L+ACAS  AL  G+ +    ++     D+            CGSI+
Sbjct: 608 ESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIE 667

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA +VF  +P  N  SW +MI+  A +GR  EAL LF +M +EG   +P+ +TF+G LSA
Sbjct: 668 DAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEG--VKPDWITFVGALSA 725

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGL++EG   F  M   F + P+ EHY CMVDL+ RAG L+EA +F+ +M  + D  
Sbjct: 726 CAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSR 784

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V GALLGACQ   N +++++  Q  LE++ +++G +VI S I+A   MW + AKMR +M 
Sbjct: 785 VWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVML 844

Query: 543 EKGVSKTPGCSWIGID 558
           ++GV K PG SWI +D
Sbjct: 845 DRGVVKKPGQSWIEVD 860



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/562 (29%), Positives = 283/562 (50%), Gaps = 57/562 (10%)

Query: 2   LLRAKAYSRHLAFTELNDPS---LLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKP 55
           L +A  ++  +   E  D S   + R+   +LL+ C   K +   ++I+  +  + +Q  
Sbjct: 85  LSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPD 144

Query: 56  NFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
            F+   +I++     +   A  +F  +   + Y++N+++ G       Y  + KL+ QM 
Sbjct: 145 IFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH-GLYEEAFKLHEQMV 203

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
           +  +KPD  T+  +  +CA+   ++ G  +++ + K G D D  V  +LI M+ +CG + 
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            A KVFD +  RDLV+W SMI+G ++ G  K+A  LF RM EE   PD++  VS+L +C 
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
               L  GK V   + +   D   Y+G+A++ MY KCG++  A  VFD +  ++VV+W A
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MI  +AQ+G  +EA + FN+M  +G+ P+++T + +L AC+S  AL  G+ +  +  + G
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 352 LRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
              D             CGS+ DA +VFE +   N V+WNAMI+A   + +   AL  F+
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF------------------------ 436
            + KEG   +PN  TF  +L+ C  +  ++ G+ +                         
Sbjct: 504 ALLKEG--IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN 561

Query: 437 --DLMSSS--FGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGAL 487
             DLMS+   F  +PK +   ++ ++  + + G    A+D+ + M E   K D+I    L
Sbjct: 562 CGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 488 LGACQKQKNTDVSQRVMQLLLE 509
           L AC   +     +R+  L+ E
Sbjct: 622 LNACASPEALTEGRRLHALITE 643



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 204/369 (55%), Gaps = 20/369 (5%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           LKD   A  +F +IS+ N  A+N MI       ++Y ++L  +  + + G+KP++ T+  
Sbjct: 464 LKD---AHRVFEKISKQNVVAWNAMITAYVQH-EQYDNALATFQALLKEGIKPNSSTFTS 519

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +   C +  +L  G  VH  + K GL+ D HVS++L++M+  CG L SA+ +F+++ +RD
Sbjct: 520 ILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD 579

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           LVSWN++I+G+ + G  + A + F  M+E    PD+IT   +L +C     L  G+ +  
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            + +   D +  +G+ LI MY KCG++  A +VF  +  K+V +W +MIT YAQ+G   E
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG----KWVDKYASQRGLRH-----D 355
           A+ LF +M+  GV PD IT +G LSACA  G ++ G    + + ++  +  + H     D
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVD 759

Query: 356 IF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           +F   G +++A++    M V  +   W A++ A     + H  + L E+ +++     PN
Sbjct: 760 LFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC----QVHLNVELAEKAAQKKLELDPN 815

Query: 413 DVTFIGVLS 421
           D     +LS
Sbjct: 816 DNGVFVILS 824



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 48/378 (12%)

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF +I+  D    N++++  SK G   EA+++  R+          T  ++L  C    +
Sbjct: 68  VFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G+ +   + K+ +  + +M + LI+MY KCG  + A+++FD M  KDV +WN ++  
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGG 185

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y Q+GL  EA  L  +M    V PDK T + +L+ACA    +D G+ +     + G   D
Sbjct: 186 YVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTD 245

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +F           CG I DA KVF+++P  + V+W +MI+ LA +GR  +A  LF+RM +
Sbjct: 246 LFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS------------------------ 440
           EG   +P+ V F+ +L AC H   +++G+++   M                         
Sbjct: 306 EG--VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSM 363

Query: 441 ----SSFGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGAC 491
                 F L+       ++ M+  +A+ G + EA+ F  +M E   + + +   ++LGAC
Sbjct: 364 EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 492 QKQKNTDVSQRVMQLLLE 509
                    Q++   ++E
Sbjct: 424 SSPSALKRGQQIQDHIIE 441


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/503 (35%), Positives = 297/503 (59%), Gaps = 15/503 (2%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F  A  LF+++   +   +N +I     +   +  +L+ +  M+R G +P++ T      
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQS-GNFKEALEYFGLMRRFGFEPNSVTITTAIS 215

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SCA LL LN G+ +H  +   G   D  +S +L+ MY +CG L+ A +VF+++ ++ +V+
Sbjct: 216 SCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVA 275

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNSMISGY   G +   ++LF RM  E   P   TL S++  C     L+ GK+V G+ +
Sbjct: 276 WNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTI 335

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +N++  + ++ S+L+D+Y KCG +  A  +F  +    VV+WN MI+ Y   G   EA+ 
Sbjct: 336 RNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALG 395

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF- 357
           LF+ M+ + V PD IT   VL+AC+ + AL+ G+ +     ++ L +         D++ 
Sbjct: 396 LFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYA 455

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG++D+A  VF+ +P  + VSW +MI+A   +G+A+ AL LF  M +     +P+ VTF
Sbjct: 456 KCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSN--MKPDRVTF 513

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC HAGLVDEG   F+ M + +G+IP+ EHYSC++DL  RAG L EA++ +++ P
Sbjct: 514 LAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNP 573

Query: 477 EKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           E  D++ +L  L  AC+  +N D+   + + L++ +  +S  Y++ S ++A+   WD+  
Sbjct: 574 EIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVR 633

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            +R+ M+E G+ K PGCSWI I+
Sbjct: 634 VVRSKMKELGLKKNPGCSWIEIN 656



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 251/473 (53%), Gaps = 24/473 (5%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           KLL LL+ C ++K+++Q   IH +++   +Q   FL   +I+L      +++A  +F  +
Sbjct: 5   KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNM 64

Query: 79  SRPNEYAF-NVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALN 136
             P E +  N ++ G T  +  Y  +L+L+ ++     LKPD++TYP V  +C  L    
Sbjct: 65  ENPCEISLWNGLMAGYTKNYM-YVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYV 123

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H+ + K GL  D  V  SL+ MYA+C   + A  +F+E+ E+D+  WN++IS Y 
Sbjct: 124 LGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  KEA+E FG MR   F P+ +T+ + + SC  L DL  G  +   ++ +   L+ +
Sbjct: 184 QSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + SAL+DMYGKCG L  A  VF+ M  K VV WN+MI+ Y   G S   I LF RM   G
Sbjct: 244 ISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEG 303

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V P   TL  ++  C+    L  GK+V  Y  +  ++ D+F           CG ++ A 
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAE 363

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +F+ +P +  VSWN MIS     G+  EAL LF  M K      P+ +TF  VL+AC  
Sbjct: 364 NIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK--SYVEPDAITFTSVLTACSQ 421

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              +++G  + +L+     L         ++D+YA+ G + EA+   + +P++
Sbjct: 422 LAALEKGEEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKR 473



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 36/182 (19%)

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D   L+ +L AC +  +L  GK + +     GL++DIF           C   D A  VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 369 EDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC---- 423
           ++M    E+S WN +++    N    EAL LFE++       +P+  T+  VL AC    
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHY-PYLKPDSYTYPSVLKACGGLY 120

Query: 424 -------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
                  +H  LV  G  +  ++ SS            +V +YA+     +A      MP
Sbjct: 121 KYVLGKMIHTCLVKTGLMMDIVVGSS------------LVGMYAKCNAFEKAIWLFNEMP 168

Query: 477 EK 478
           EK
Sbjct: 169 EK 170


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 200/568 (35%), Positives = 302/568 (53%), Gaps = 24/568 (4%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID---- 64
           ++HL          ++  LL  +++C   ++ +QIH Q+L + +   + ++ +  +    
Sbjct: 69  AKHLVIGMNKGTHSMKWVLLDFIQRCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGK 128

Query: 65  -LKDFNYASLLFHQISRP-NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
            + D  Y      Q     + +  N++I G       ++ ++++Y  +   G  PD +T 
Sbjct: 129 HVTDIRYPCNFLKQFDWSFSSFPCNLIISGYGAGNFPWA-AIRIYRWVVGNGFVPDVYTV 187

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           P V  SCA    +     +H+   K  L  D  V +S + +Y+ CG    A KVFD +  
Sbjct: 188 PAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVFDFMPV 247

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           RD+VSW  +ISGY K G   +AV LF RM   +  P+  T VS+LG+CG LG L LGK +
Sbjct: 248 RDVVSWTGLISGYMKAGLFNDAVALFLRM---DVAPNAATFVSILGACGKLGCLNLGKGI 304

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G V K        + + L+DMY KC ++  A+R+FD +  KD+V+W +MI+   Q    
Sbjct: 305 HGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCP 364

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
            E++ LF  M  +G  PD + L  VLSACAS+G LD G+WV +Y     ++ D+      
Sbjct: 365 QESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSL 424

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG I+ A ++F  +P  N  +WNA I  LA NG   EAL  F  + + G   RP
Sbjct: 425 IDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESG--TRP 482

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSS-FGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           N++TF+ V SAC H+GLVDEGR  F  M+S  + L P  EHY CMVDL  RA  + EA +
Sbjct: 483 NEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAME 542

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            + +MP   D  ++GALL A     N +++  +++ +   E   SG YV+ S  +AN K 
Sbjct: 543 LINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKK 602

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           W +   +R LM+EKG+SK PG S I +D
Sbjct: 603 WAEVRSVRRLMKEKGISKAPGSSLIRVD 630


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 306/553 (55%), Gaps = 23/553 (4%)

Query: 30  LLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLK C      K  ++IH  ++ +      F +  ++++    +  N A  +F ++   +
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERD 95

Query: 83  EYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
              +N MI G   A   ++  +L L  +M   G +PD+ T   +  + A+   L  G++V
Sbjct: 96  LVCWNTMISGY--AQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAV 153

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V + G +   +VS +L+ MY++CG +  AR +FD +  R +VSWNSMI GY + G A
Sbjct: 154 HGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDA 213

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           + A+ +F +M +E   P  +T++  L +C DLGDL  GK+V   V + K+D +  + ++L
Sbjct: 214 EGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSL 273

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KC  +  A  +F  + NK +V+WNAMI  YAQNG  NEA+  F  M+   + PD 
Sbjct: 274 ISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDS 333

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T++ V+ A A +      KW+     +R L  ++F           CG+I  A K+F+ 
Sbjct: 334 FTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDM 393

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + ++WNAMI     +G    ++ LF+ M K  G  +PND+TF+  LSAC H+GLV+
Sbjct: 394 MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK--GTIKPNDITFLCALSACSHSGLVE 451

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F+ M   +G+ P  +HY  MVDL  RAG L++AWDF+++MP K    V GA+LGA
Sbjct: 452 EGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGA 511

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN D+ ++    + ++   + G +V+ + I+A   MW   AK+R +M + G+ KTP
Sbjct: 512 CKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTP 571

Query: 551 GCSWIGIDDPKQS 563
           GCS + I +   S
Sbjct: 572 GCSLVEIGNEVHS 584



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 205/384 (53%), Gaps = 14/384 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L  + +MK   ++P  + + ++   C +   L  G  +H SV   G   +      ++ 
Sbjct: 14  ALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVN 73

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+C +++ A  +FD + ERDLV WN+MISGY++ G+AK A+ L  RM EE   PD IT
Sbjct: 74  MYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSIT 133

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +VS+L +  D   L +G  V G+V++   +    + +AL+DMY KCG++  AR +FD M 
Sbjct: 134 IVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMD 193

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           ++ VV+WN+MI  Y Q+G +  A+++F +M   GV P  +T++G L ACA +G L+ GK+
Sbjct: 194 HRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKF 253

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           V K   Q  L  D+            C  +D A  +F+++     VSWNAMI   A NG 
Sbjct: 254 VHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGC 313

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
            +EAL  F  M       +P+  T + V+ A     +  + + +  L+   F L      
Sbjct: 314 VNEALNAFCEMQSRN--IKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF-LDKNVFV 370

Query: 452 YSCMVDLYARAGHLSEAWDFVERM 475
            + +VD+YA+ G +  A    + M
Sbjct: 371 MTALVDMYAKCGAIHTARKLFDMM 394



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 18/319 (5%)

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M+ GY+K      A+  F RM+ +   P       +L  CGD  DL  GK + G V+ + 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              N +  + +++MY KC  +  A  +FD M  +D+V WN MI+ YAQNG +  A+ML  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CG 359
           RM   G  PD IT++ +L A A    L +G  V  Y  + G            D++  CG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+  A  +F+ M     VSWN+MI     +G A  A+L+F++M  EG   +P +VT +G 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG--VQPTNVTVMGA 238

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC   G ++ G+ +  L+     L       + ++ +Y++   +  A D  + +  K 
Sbjct: 239 LHACADLGDLERGKFVHKLV-DQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKT 297

Query: 480 ----DEIVLGALLGACQKQ 494
               + ++LG     C  +
Sbjct: 298 LVSWNAMILGYAQNGCVNE 316


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 316/587 (53%), Gaps = 58/587 (9%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN-----------FIQKPNFLLIRIIDLKDFNYASLLF 75
           +L LL++C S + + Q+H  +L +            +     L  R  D+    +A  +F
Sbjct: 6   VLELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVA-LCHARRMF 64

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
            ++  P+ +A+N +IR  + +      +L L+  + R G+ P+ FT PFV  +C+   A 
Sbjct: 65  DRVPDPDRFAYNSLIRAYSNSGCP-QEALCLHRDVLRRGILPNEFTLPFVLKACSRARAA 123

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-ERDLVSWNSMISG 194
            H ++ H    K+G      V ++L+   A  G L  +R++F E+   R++VSWN+MI G
Sbjct: 124 EHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGG 183

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            ++ G   EA  LF  MR +  L D  T VS+L  C   G+L +G+ V   ++ +   ++
Sbjct: 184 CAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVD 243

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW------------------------- 289
             +G+AL+DMYGKCG L  A R FD M  K+VV+W                         
Sbjct: 244 LILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPE 303

Query: 290 ------NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
                 NAMI+ Y Q G   E + L+NRMK  G+ PD++TL GVLS     G L  G+ +
Sbjct: 304 RNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMI 363

Query: 344 DKYA----SQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             Y     S  G+       D++  CG +D ++ +F +MP  N +SWN +I ALA +GRA
Sbjct: 364 HCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRA 423

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EA++ F  M  +  A  P+++TF+G+LSAC H GL+++G+  F  M   + + P+ EHY
Sbjct: 424 QEAVMFFRAMVSD--AFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHY 481

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +CMVDL  R GHL++A D ++ MP K D +V GAL+GAC+   + ++ +  ++ LLE+E 
Sbjct: 482 ACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEG 541

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            N G +V+ S +    + W+D  ++R LMR++G  K  G S I I++
Sbjct: 542 INGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINN 588


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/577 (34%), Positives = 317/577 (54%), Gaps = 32/577 (5%)

Query: 2   LLRAKAYSRHLAFTELNDPS-LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI 60
           +L +   ++ L ++    P  +L E  +SLL+ C +   +Q++  Q++ +  Q   ++  
Sbjct: 2   ILLSGKIAKLLLYSAQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAP 61

Query: 61  RIID----LKDFNYASLLFHQISRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGL 115
            ++     LK   +A  LF     P    +N + RG    A+  Y   + L+ +MK + +
Sbjct: 62  NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAF--YREVVFLFGKMKSMDV 119

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +P+ FT+P V  SCA + A   G  +H  V K GL+ +  V+ +LI +Y+    + SA K
Sbjct: 120 RPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYK 179

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           +F  + ER++V+W SMISGY        A  LF    E + +   I +   +    ++GD
Sbjct: 180 LFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYI----EIGD 235

Query: 236 LVLG-KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           +    K  +    ++ M  N      +++ Y   G +    ++F+ M  ++V +WN +I 
Sbjct: 236 MKAARKLFDTMPYRDTMSWN-----TMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIG 290

Query: 295 AYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            YA NG   E +  F RM   G V P+  TL+ VLSACA +GALDLGKWV  YA+  G +
Sbjct: 291 GYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFK 350

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
             I+           CG I++A++VFE M + + ++WN+MI  LA +G   +AL LF +M
Sbjct: 351 GSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQM 410

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G   +P+ +TFIGVL +C H GLV+EG   F+ M + + + P+ EHY CMVDL+ RA
Sbjct: 411 KING--EKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRA 468

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L  A +FV+RMP + D ++  ALLGAC+  KN D+++  +Q L+ +E  N  NYV+ S
Sbjct: 469 GLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLS 528

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            I+ +L  W D A+++ LMR+ G  K PGCS I ++D
Sbjct: 529 NIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVND 565


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 311/556 (55%), Gaps = 33/556 (5%)

Query: 27  LLSLLKKCPS---TKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH--Q 77
           L S+L+ C S    +T + IH  ++ N  +   F++  ++D+    K  + A  LF   +
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE 224

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
             R N   +  M+ G       Y  +++ +  M   G++ + +T+P +  +C+++LA   
Sbjct: 225 FDRKNHVLWTAMVTGYAQNGDGYK-AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH  + K G   + +V  +L+ MYA+CG L +A+ + + + + D+VSWNS++ G+ +
Sbjct: 284 GEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG----KWVEGFVVKNKMDL 253
            G  +EA+ LF  M       D+ T  SVL  C      V+G    K V G ++K   + 
Sbjct: 344 HGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC------VVGSINPKSVHGLIIKTGFEN 397

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + +AL+DMY K G +  A  VF+ M+ KDV++W +++T YAQN    E++ +F  M+
Sbjct: 398 YKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMR 457

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR--HDIF---------CGSID 362
             GVNPD+  +  +LSACA +  L+ GK V     + GLR    ++         CG +D
Sbjct: 458 VTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLD 517

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA  +F  M V + ++W A+I   A NG+   +L  ++ M   G   RP+ +TFIG+L A
Sbjct: 518 DADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSG--TRPDFITFIGLLFA 575

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLVDEGR+ F  M+  +G+ P  EHY+CM+DL+ R+G L EA   +++M  K D  
Sbjct: 576 CSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDAT 635

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V  +LL AC+  +N ++++R    L E+E  N+  YV+ S +++  + W+D AK+R LM+
Sbjct: 636 VWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMK 695

Query: 543 EKGVSKTPGCSWIGID 558
            KG+ K PGCSW+ I+
Sbjct: 696 SKGIVKEPGCSWLEIN 711



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 219/479 (45%), Gaps = 48/479 (10%)

Query: 34  CPSTKTVQQIHTQMLINF--IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIR 91
           C     ++ IHT    ++  I + N LL ++      N A  LF ++ + +EY++N MI 
Sbjct: 45  CKFMAFLRSIHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMIS 104

Query: 92  GLTT---------------------------AWQKYS---HSLKLYYQMKRLGLKPDNFT 121
                                           + K+     +  L+  M+  G K   FT
Sbjct: 105 SYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFT 164

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--E 179
              V   C++L  +  G  +H  V K G + +  V   L+ MYA+C  +  A  +F   E
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE 224

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
              ++ V W +M++GY++ G   +AVE F  M  +    ++ T  ++L +C  +     G
Sbjct: 225 FDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG 284

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + V GF+VK+    N Y+ SAL+DMY KCG L  A+ + + M + DVV+WN+++  + ++
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA-------SIGALDLGKWVDKYASQRGL 352
           GL  EA+ LF  M    +  D  T   VL+ C        S+  L +    + Y      
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA 404

Query: 353 RHDIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
             D++   G +D A  VFE M   + +SW ++++  A N    E+L +F  M   G    
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG--VN 462

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRL-FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           P+      +LSAC    L++ G+++  D + S  GL      Y+ +V +YA+ G L +A
Sbjct: 463 PDQFIVASILSACAELTLLEFGKQVHLDFIKS--GLRWSQSVYNSLVAMYAKCGCLDDA 519



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 206/425 (48%), Gaps = 63/425 (14%)

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI------------------- 192
           E  + ++ L+   ++ G+++ ARK+FD++ ++D  SWN+MI                   
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 193 ------------SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
                       SGY K G   EA +LF  MR E +   + TL SVL  C  LG +  G+
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQ 298
            + GFVVKN  + N ++ + L+DMY KC  +  A  +F  +    K+ V W AM+T YAQ
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 242

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG   +A+  F  M   GV  ++ T   +L+AC+S+ A   G+ V  +  + G   +++ 
Sbjct: 243 NGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYV 302

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG + +A  + E M   + VSWN+++     +G   EAL LF+ M   G 
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNM--HGR 360

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--EHY----SCMVDLYAR 461
             + +D TF  VL+ CV  G ++          S  GLI K+  E+Y    + +VD+YA+
Sbjct: 361 NMKIDDYTFPSVLNCCV-VGSINP--------KSVHGLIIKTGFENYKLVSNALVDMYAK 411

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            G +  A+   E+M EK D I   +L+    +  + + S ++    + +   N   ++++
Sbjct: 412 TGDMDCAYTVFEKMLEK-DVISWTSLVTGYAQNNSHEESLKIF-CDMRVTGVNPDQFIVA 469

Query: 522 SKIFA 526
           S + A
Sbjct: 470 SILSA 474


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 309/553 (55%), Gaps = 23/553 (4%)

Query: 30  LLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLK C      K  ++IH Q++ N      F +  ++++    +  + A  +F ++   +
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD 212

Query: 83  EYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N +I G +   + K   +L+L  +M+  G +PD+ T   V  + A++  L  G S+
Sbjct: 213 LVSWNTIIAGFSQNGFAK--KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    + G  +  ++S +L  MY++CG +++AR +FD + ++ +VSWNSM+ GY + G  
Sbjct: 271 HGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEP 330

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++A+ +F +M EE   P  +T++  L +C DLGDL  GK+V  FV +  +  +  + ++L
Sbjct: 331 EKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSL 390

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KC  +  A  +F+ +  +  V+WNAMI  YAQNG  +EA+  F+ MK  G+ PD 
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDS 450

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T++ V+ A A +      KW+     +  L  +IF           CG+I  A K+F+ 
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   + ++WNAMI     +G    AL LF++M K  GA  PND+T++ V+SAC H+GLVD
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK--GAVEPNDITYLSVISACSHSGLVD 568

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG R F  M   +GL P  +HY  MVDL  RAG + EAWDF+E MP      V GA+LGA
Sbjct: 569 EGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGA 628

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN +V ++  + L E+     G +V+ + I+A+   W   A++R  M +KG+ KTP
Sbjct: 629 CKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTP 688

Query: 551 GCSWIGIDDPKQS 563
           GCS + + +   S
Sbjct: 689 GCSVVELRNEVHS 701



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/526 (29%), Positives = 254/526 (48%), Gaps = 61/526 (11%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           LL+ C S K + QI   ++ N +   +    +++ L       N A+ +F  I    +  
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           ++ M++G          +L    +M+   +KP  + + ++   C +   L  G  +H  +
Sbjct: 115 YHTMLKGYAKN-SSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
                  +      ++ MYA+C ++D A K+FD + ERDLVSWN++I+G+S+ G+AK+A+
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           EL  RM++E   PD ITLV+VL +  D+G L++GK + G+ ++        + +AL DMY
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG++  AR +FD M  K VV+WN+M+  Y QNG   +AI +F +M   G++P  +T++
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
             L ACA +G L+ GK+V K+  Q  L  DI            C  +D A  +F ++   
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV------LSACVHA-- 426
             VSWNAMI   A NGR  EAL  F  M   G   +P+  T + V      LS   HA  
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLG--MKPDSFTMVSVIPALAELSVTRHAKW 471

Query: 427 ---------------------------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
                                      G +   R+LFD++S    +      ++ M+D Y
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNAMIDGY 526

Query: 460 ARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQR 502
              G    A D  ++M +   + ++I   +++ AC      D   R
Sbjct: 527 GTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR 572


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/501 (37%), Positives = 291/501 (58%), Gaps = 16/501 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISC 129
           AS +F +I++P+  ++N +I G      +Y H +L+L  +M + G+ P+ FT      +C
Sbjct: 165 ASSVFDEIAKPDIVSWNAIIAG--CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKAC 222

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A +     G  +HSS+ K+ +  D  +   LI MY++C  +D AR VF  + ERD+++WN
Sbjct: 223 AGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWN 282

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++ISG+S+    +EA  LF  M  E    ++ TL +VL S   L    + + +    +K+
Sbjct: 283 AVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKS 342

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             + + Y+ ++LID YGKCG +  A RVF+     D+V + +++TAYAQ+G   EA+ L+
Sbjct: 343 GFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLY 402

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+  G+ PD      +L+ACAS+ A + GK V  +  + G   DIF           C
Sbjct: 403 LEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKC 462

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GSI+DA   F  +PV   VSW+AMI  LA +G   EAL LF++M K G    PN +T + 
Sbjct: 463 GSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVG--VPPNHITLVS 520

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC HAGLV E +  F+ M   FG+ P  EHY+CM+DL  RAG L  A + V +MP +
Sbjct: 521 VLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQ 580

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + +V GALLGA +  KN D+ ++  ++LL +E   SG +V+ + I+A++ MWD  A++R
Sbjct: 581 ANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVR 640

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
            LM++  V K PG SW+ + D
Sbjct: 641 RLMKDGKVKKEPGMSWLEVKD 661



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 233/466 (50%), Gaps = 22/466 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNF----LLIRIIDLKDFNYASLLFHQISRP 81
           S+LK C  TK +   +Q+H  +++       F    L+I       F  A  LF  I   
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++N +      +   +  ++ L++ M   G++P+ F+   +   C  L     G  +
Sbjct: 75  SVVSWNALFSCYVHS-DMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKI 133

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + K+G D D   +++L+ MYA+ G L+ A  VFDEI + D+VSWN++I+G     Y 
Sbjct: 134 HGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYH 193

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+EL   M +    P+  TL S L +C  +    LG+ +   ++K  M  + ++G  L
Sbjct: 194 HRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGL 253

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMY KC ++  AR VF  M  +D++ WNA+I+ ++QN    EA  LF  M   G+  ++
Sbjct: 254 IDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQ 313

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL  VL + A++ A  + + +   + + G   D +           CG ++DA +VFE+
Sbjct: 314 TTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEE 373

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
            P+ + V + ++++A A +G+  EAL L+  M   G   +P+      +L+AC      +
Sbjct: 374 SPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRG--IKPDSFVCSSLLNACASLSAYE 431

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +G+++  +    FG +      + +V++YA+ G + +A     R+P
Sbjct: 432 QGKQV-HVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIP 476



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 202/413 (48%), Gaps = 18/413 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M  LG+K + F +P V  +C     L  G  VH  V   G D D+ V++SL+ +YA+CG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
              AR +FD I +R +VSWN++ S Y       EAV LF  M      P+E +L S++  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L D V G+ + G+++K   D + +  +AL+DMY K G L  A  VFD +   D+V+W
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           NA+I     +   + A+ L   M  +G+ P+  TL   L ACA +   +LG+ +     +
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
             +  D F           C S+DDA  VF+ MP  + ++WNA+IS  + N    EA  L
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  M  EG     N  T   VL + + A   +   R    +S   G    +   + ++D 
Sbjct: 301 FPLMHTEGIGF--NQTTLSTVLKS-IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y + GH+ +A    E  P  VD ++  +L+ A  +       +  ++L LE++
Sbjct: 358 YGKCGHVEDATRVFEESP-IVDLVLFTSLVTAYAQDGQ---GEEALRLYLEMQ 406


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/585 (33%), Positives = 304/585 (51%), Gaps = 59/585 (10%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN------FIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           +L  + +C +T  ++QIH  ML        +          I       YA  +F+QI +
Sbjct: 75  ILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQ 134

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN Y +N +IRG  ++       L   + +      P+ FT+PF+F + + L  L+ G  
Sbjct: 135 PNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSV 194

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V K  L  D  + +SLI  Y   G  D A +VF  +  +D+VSWN+MI+ ++  G 
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGL 254

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             +A+ LF  M  ++  P+ IT+VSVL +C    DL  G+W+  ++  N    +  + +A
Sbjct: 255 PDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNA 314

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTW------------------------------- 289
           ++DMY KCG +  A+ +F+ M  KD+V+W                               
Sbjct: 315 MLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAW 374

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           NA+I+AY QNG    A+ LF+ M+ +    PD++TLI  L A A +GA+D G W+  Y  
Sbjct: 375 NALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIK 434

Query: 349 QRGLRHDIF---------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
               +HDI                CG+++ A++VF  +   +   W+AMI ALA  G+  
Sbjct: 435 ----KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGK 490

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            AL LF  M +     +PN VTF  +L AC HAGLV+EG +LF+ M   +G++P+ +HY 
Sbjct: 491 AALDLFSSMLE--AYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYV 548

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           C+VD++ RAG L +A  F+E+MP      V GALLGAC +  N ++++   Q LLE+E  
Sbjct: 549 CVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPC 608

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           N G +V+ S I+A    W+  + +R LMR+  V K P CS I ++
Sbjct: 609 NHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVN 653


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 193/545 (35%), Positives = 306/545 (56%), Gaps = 46/545 (8%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEY 84
           +LLK C +T T++Q+H +++   + + +FL+ + +     L +F+Y + +F+ +S P+  
Sbjct: 30  TLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTV 89

Query: 85  AFNVMIRGLTTAWQKYSHSL--KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            +N  I+G +   + YS SL   L+ +MKR    PD FTYP +  +C+ +  +  GV+ H
Sbjct: 90  LWNTYIKGYS---ENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFH 146

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
            S  + G+  D  V  SLI +Y +CG++  ARKVFDE+ ER++VSW +MI+GY+      
Sbjct: 147 GSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLV 206

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA +LF  M E+  +     ++S    CGDL      K  +    +N +       + +I
Sbjct: 207 EARKLFDEMPEKNAVSWN-AIISGYVKCGDLRS--ARKMFDEMPHRNVVSF-----TTMI 258

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y K G +  AR VF+    +DVV W+A+I               F       V PD+ 
Sbjct: 259 DGYAKSGDMASARFVFEEAPERDVVAWSALI---------------FRVCAEWNVKPDEF 303

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGL---RHDIF---------CGSIDDALKVFED 370
            ++ ++SAC+ +G+L+L KWVD Y  +  +   R  +          CGS+D A K+FE+
Sbjct: 304 IMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEE 363

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  + +S+ +M+  L+ +G   +A+ LF RM  EG    P+DV F  +L+AC  AGLVD
Sbjct: 364 MPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEG--LTPDDVAFTVILTACSRAGLVD 421

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F+ M + + ++P  +HY+CMVDL  RAG L EA++ ++ MP +      GALLGA
Sbjct: 422 EGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGA 481

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   + ++ + V   L E+E  N+GNYV+ S I+A  + W D + +R  MRE+G+ K P
Sbjct: 482 CKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIP 541

Query: 551 GCSWI 555
           GCSWI
Sbjct: 542 GCSWI 546


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/500 (37%), Positives = 286/500 (57%), Gaps = 14/500 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  + + +   +N MI G          S  L+++M    +KPD+ T+       +
Sbjct: 302 ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASC-LFHEMISARMKPDSITFSSFLPLLS 360

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               L  G  +H  + + G+  D  +  +LI +Y +C  ++ ARK+FD+    D+V   +
Sbjct: 361 EGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTA 420

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MISGY   G    A+E+F  + +E    + +TL SVL +C  L  L LGK + G ++KN 
Sbjct: 421 MISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNG 480

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              + Y+GSA++DMY KCG L  A + F  + +KD V WN+MIT+ +QNG   EAI LF 
Sbjct: 481 HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR 540

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M  AG   D +++   LSACA++ AL  GK +  +  +   R D+F           CG
Sbjct: 541 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG 600

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           ++D A +VF+ M   NEVSWN++I+A   +GR  ++L LF  M  +G   +P+ VTF+ +
Sbjct: 601 NLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDG--IQPDHVTFLAI 658

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           +SAC HAG VDEG   F  M+   G++ + EHY+CMVDL+ RAG L+EA+  +  MP   
Sbjct: 659 ISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSP 718

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D  V G LLGAC+   N ++++   + L +++  NSG YV+ S + AN   W+   K+R+
Sbjct: 719 DAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRS 778

Query: 540 LMREKGVSKTPGCSWIGIDD 559
           LM+E+GV K PGCSWI +++
Sbjct: 779 LMKERGVQKVPGCSWIDVNN 798



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 244/509 (47%), Gaps = 36/509 (7%)

Query: 10  RHLAFTELNDPSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL- 65
           + L F+  ND SL   +L+S+L+ C     +   +Q H QML+N I     L  +++ + 
Sbjct: 33  KPLQFSIHNDDSL-APQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMY 91

Query: 66  ---KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
                F  A  +F+Q+       +N MIRG T   Q +  +L  Y++M   G  PD +T+
Sbjct: 92  VLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQ-FDFALLFYFKMLGCGTLPDKYTF 150

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           P+V  +C  L ++  G  VH  +  +G + D  V  SLI  Y+  G +  AR +FD +  
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +D V WN M++GY K G    A  +F  MR  E  P+ +T   VL  C     +  G  +
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G VV + ++++  + + L+ MY KCG L  ARR+FD M   D+VTWN MI+ Y QNG  
Sbjct: 271 HGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFM 330

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
           +EA  LF+ M  A + PD IT    L   +    L  GK +  Y  + G+  D+F     
Sbjct: 331 DEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSAL 390

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 C  ++ A K+F+     + V   AMIS    NG  + AL +F  + +E    R 
Sbjct: 391 IDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE--RMRA 448

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH-YSCMV-----DLYARAGHL 465
           N VT   VL AC     +  G+ L        G I K+ H  SC V     D+YA+ G L
Sbjct: 449 NSVTLASVLPACAGLAALTLGKEL-------HGHILKNGHGGSCYVGSAIMDMYAKCGRL 501

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQ 494
             A      + +K D +   +++ +C + 
Sbjct: 502 DLAHQTFIGISDK-DAVCWNSMITSCSQN 529



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 230/434 (52%), Gaps = 22/434 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +   +NVM+ G       + ++  ++ +M+R    P++ T+  V   CA
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKN-GDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           + + +N G  +H  V   GL+ D  V+++L+ MYA+CG L  AR++FD + + DLV+WN 
Sbjct: 260 SEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNG 319

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MISGY + G+  EA  LF  M      PD IT  S L    +   L  GK +  ++++N 
Sbjct: 320 MISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNG 379

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ ++ SALID+Y KC  +  AR++FD     D+V   AMI+ Y  NG++N A+ +F 
Sbjct: 380 VSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR 439

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            +    +  + +TL  VL ACA + AL LGK +  +  + G     +           CG
Sbjct: 440 WLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 499

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D A + F  +   + V WN+MI++ + NG+  EA+ LF +M   G   + + V+    
Sbjct: 500 RLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAG--TKYDCVSISAA 557

Query: 420 LSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMP 476
           LSAC +   +  G+ +   +M  +F    +S+ +  S ++D+Y++ G+L  A    + M 
Sbjct: 558 LSACANLPALHYGKEIHAFMMRGAF----RSDLFAESALIDMYSKCGNLDLACRVFDTME 613

Query: 477 EKVDEIVLGALLGA 490
           EK +E+   +++ A
Sbjct: 614 EK-NEVSWNSIIAA 626



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 222/474 (46%), Gaps = 39/474 (8%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+     L LL +  + +  ++IH  ++ N +    FL   +ID+    +D   A  +F 
Sbjct: 349 SITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFD 408

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q +  +      MI G        +++L+++  + +  ++ ++ T   V  +CA L AL 
Sbjct: 409 QRTPVDIVVCTAMISGYVLNGMN-NNALEIFRWLLQERMRANSVTLASVLPACAGLAALT 467

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  + K G     +V  +++ MYA+CG+LD A + F  I ++D V WNSMI+  S
Sbjct: 468 LGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCS 527

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  +EA++LF +M       D +++ + L +C +L  L  GK +  F+++     + +
Sbjct: 528 QNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLF 587

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             SALIDMY KCG L  A RVFD M  K+ V+WN++I AY  +G   +++ LF+ M   G
Sbjct: 588 AESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDG 647

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNE 376
           + PD +T + ++SAC   G +D G             H   C  + + L +   M     
Sbjct: 648 IQPDHVTFLAIISACGHAGQVDEGI------------HYFRC--MTEELGIMARME---- 689

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD----EG 432
             +  M+      GR +EA  +   M        P+   +  +L AC   G V+      
Sbjct: 690 -HYACMVDLFGRAGRLNEAFGMINSM-----PFSPDAGVWGTLLGACRLHGNVELAEVAS 743

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           R LFDL   + G      +Y  + +++A AG           M E+  + V G 
Sbjct: 744 RNLFDLDPQNSG------YYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGC 791


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 309/576 (53%), Gaps = 50/576 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFI-QKPN---FLLIRIIDLKDFNYASLLFHQISRPN 82
           +L  L  C S   ++Q+H  +L   I  K N   F L       + +YA  +F  I  P 
Sbjct: 15  ILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPP 74

Query: 83  E-YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           E   FN  +R L+ + +  + ++  Y +++ +G + D F++  +  + + + AL  G+ +
Sbjct: 75  ESIVFNPFLRDLSRSSEPRA-TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMEL 133

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H   FKI    D  V    + MYA CG+++ AR VFDE+  RD+V+WN+MI  Y + G  
Sbjct: 134 HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDL------ 253
            EA +LF  M++   +PDE+ L +++ +CG  G++   + +  F+++N  +MD       
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253

Query: 254 -----------------------NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
                                  N ++ +A++  Y KCG L  A+ +FD    KD+V W 
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            MI+AY ++    EA+ +F  M  +G+ PD +++  V+SACA++G LD  KWV       
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373

Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           GL  ++            CG +D    VFE MP  N VSW++MI+AL+ +G A +AL LF
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            RM +E     PN+VTF+GVL  C H+GLV+EG+++F  M+  + + PK EHY CMVDL+
Sbjct: 434 ARMKQEN--VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA + +E MP   + ++ G+L+ AC+     ++ +   + +LE+E  + G  V
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           + S I+A  + W+D   +R +M EK V K  G S I
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/550 (35%), Positives = 296/550 (53%), Gaps = 23/550 (4%)

Query: 29  SLLKKC---PSTKTVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
           S+LK C   PS    Q++H  ++ N         N L++   ++     A LLF +I   
Sbjct: 129 SVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENK 188

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  +++ MIR    +      +L L   M  + +KP       +    A L  L  G ++
Sbjct: 189 DVVSWSTMIRSYDRSGL-LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAM 247

Query: 142 HSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           H+ V + G      V    +LI MY +C  L  AR+VFD + +  ++SW +MI+ Y    
Sbjct: 248 HAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCN 307

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              E V LF +M  E   P+EIT++S++  CG  G L LGK +  F ++N   L+  + +
Sbjct: 308 NLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLAT 367

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           A IDMYGKCG +  AR VFD+  +KD++ W+AMI++YAQN   +EA  +F  M   G+ P
Sbjct: 368 AFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRP 427

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           ++ T++ +L  CA  G+L++GKW+  Y  ++G++ D+            CG ID A ++F
Sbjct: 428 NERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLF 487

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            +    +   WNAMIS  A +G    AL LFE M   G    PND+TFIG L AC H+GL
Sbjct: 488 AEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALG--VTPNDITFIGALHACSHSGL 545

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + EG+RLF  M   FG  PK EHY CMVDL  RAG L EA + ++ MP + +  V G+ L
Sbjct: 546 LQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFL 605

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+  KN  + +   +  L +E   SG  V+ S I+A+   W D A +R  M+++G+ K
Sbjct: 606 AACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVK 665

Query: 549 TPGCSWIGID 558
            PG S I ++
Sbjct: 666 EPGVSSIEVN 675



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 190/377 (50%), Gaps = 16/377 (4%)

Query: 105 KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           K+Y  M+    + DNF  P V  +C  + +   G  VH  V K G   D  V ++LI MY
Sbjct: 110 KIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMY 169

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
           +  G L  AR +FD+I  +D+VSW++MI  Y + G   EA++L   M      P EI ++
Sbjct: 170 SEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMI 229

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           S+     +L DL LGK +  +V++N         + +ALIDMY KC  L  ARRVFD + 
Sbjct: 230 SITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLS 289

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
              +++W AMI AY      NE + LF +M   G+ P++IT++ ++  C + GAL+LGK 
Sbjct: 290 KASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKL 349

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  +  + G    +            CG +  A  VF+     + + W+AMIS+ A N  
Sbjct: 350 LHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNC 409

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             EA  +F  M+  G   RPN+ T + +L  C  AG ++ G+ +   +    G+      
Sbjct: 410 IDEAFDIFVHMT--GCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQ-GIKGDMIL 466

Query: 452 YSCMVDLYARAGHLSEA 468
            +  VD+YA  G +  A
Sbjct: 467 KTSFVDMYANCGDIDTA 483



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 146/291 (50%), Gaps = 16/291 (5%)

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+ Y K     +A +++  MR  +   D   + SVL +C  +   +LG+ V GFVVKN 
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              + ++ +ALI MY + G+L  AR +FD + NKDVV+W+ MI +Y ++GL +EA+ L  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG-------------LRHDIF 357
            M    V P +I +I +    A +  L LGK +  Y  + G             +   + 
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C ++  A +VF+ +   + +SW AMI+A       +E + LF +M  EG    PN++T +
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG--MFPNEITML 332

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            ++  C  AG ++ G +L    +   G        +  +D+Y + G +  A
Sbjct: 333 SLVKECGTAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/507 (37%), Positives = 307/507 (60%), Gaps = 19/507 (3%)

Query: 68  FNYASL---LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           F + SL   LF  +   +   +N MI G      K + +L+++ +M+   +  D+ T   
Sbjct: 187 FGFVSLACNLFDNMMIRDIGTWNAMISGFYLN-GKVAEALEVFDEMRFKSVSMDSVTISS 245

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +   C  L  +  GV +H    K+GL+ D  V ++LI MYA+ G+L SA  +F++++ RD
Sbjct: 246 LLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRD 305

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +VSWNS+++ + +      A+ ++ +M     +PD +TLVS+     +LG+ +  + + G
Sbjct: 306 IVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHG 365

Query: 245 FVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           FV +    L +  +G+A+IDMY K G +  AR+VF+ +  KDV++WN++IT Y+QNGL+N
Sbjct: 366 FVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLAN 425

Query: 304 EAIMLFNRMKY-AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
           EAI +++ M+Y +G  P++ T + +L+A + +GAL  G        +  L  DIF     
Sbjct: 426 EAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCL 485

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG + DAL +F ++P  + VSWNA+IS    +G   +A+ LF+ M  EG   +P
Sbjct: 486 VDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEG--VKP 543

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           + +TF+ +LSAC H+GLVDEG+  F LM  ++G+ P  +HY CMVDL+ RAGHL +A++F
Sbjct: 544 DHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNF 603

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           V+ MP + D  V GALLGAC+  +N ++ + V   LL++ES N G YV+ S I+A L  W
Sbjct: 604 VKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHW 663

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGID 558
           +   ++R+L R++G+ KTPG S I +D
Sbjct: 664 EGVDEVRSLARDRGLKKTPGWSSIEVD 690



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/530 (28%), Positives = 260/530 (49%), Gaps = 63/530 (11%)

Query: 34  CPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVM 89
           C      +Q+H  ++++   +  FL  ++I+    L D  +A L F QI   + Y +N M
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSM 112

Query: 90  IRGLTTAWQKYSH---SLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           I    +A+ +  H   ++  + +      L+ D++T+P V  +C NL   + G  VH  V
Sbjct: 113 I----SAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL---DDGRKVHCLV 165

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K+G + D +++ S I  Y+R G +  A  +FD +  RD+ +WN+MISG+   G   EA+
Sbjct: 166 LKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEAL 225

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           E+F  MR +    D +T+ S+L  C  L D++ G  +  + +K  ++ + ++ +ALI+MY
Sbjct: 226 EVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMY 285

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            K G L  A  +F+ M  +D+V+WN+++ A+ QN     A+ ++N+M   GV PD +TL+
Sbjct: 286 AKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLV 345

Query: 326 GVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPV 373
            + S  A +G     + +  + ++R    HDI  G+           ID A KVFE +PV
Sbjct: 346 SLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPV 405

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + +SWN++I+  + NG A+EA+ ++  M    GA  PN  T++ +L+A    G + +G 
Sbjct: 406 KDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV-PNQGTWVSILTAHSQLGALKQGM 464

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE---------------- 477
           +    +  +F L       +C+VD+Y + G L++A      +P                 
Sbjct: 465 KAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLH 523

Query: 478 ------------------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
                             K D I   +LL AC      D  Q   QL+ E
Sbjct: 524 GYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQE 573


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 308/556 (55%), Gaps = 31/556 (5%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQ 77
           +L E  +SLL+ C +   +Q++  Q++ +  Q   ++   ++     LK   +A  LF  
Sbjct: 65  VLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDH 124

Query: 78  ISRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
              P    +N + RG    A+  Y   + L+ +MK + ++P+ FT+P V  SCA + A  
Sbjct: 125 FPDPKVELWNAISRGYFHNAF--YREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFV 182

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  V K GL+ +  V+ +LI +Y+    + SA K+F  + ER++V+W SMISGY 
Sbjct: 183 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI 242

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNF 255
                  A  LF    E + +   I +   +    ++GD+    K  +    ++ M  N 
Sbjct: 243 LCNRVALARRLFDLAPERDVVLWNIMVSGYI----EIGDMKAARKLFDTMPYRDTMSWN- 297

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
                +++ Y   G +    ++F+ M  ++V +WN +I  YA NG   E +  F RM   
Sbjct: 298 ----TMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID 353

Query: 316 G-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           G V P+  TL+ VLSACA +GALDLGKWV  YA+  G +  I+           CG I++
Sbjct: 354 GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIEN 413

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A++VFE M + + ++WN+MI  LA +G   +AL LF +M   G   +P+ +TFIGVL +C
Sbjct: 414 AMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKING--EKPDGITFIGVLCSC 471

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H GLV+EG   F+ M + + + P+ EHY CMVDL+ RAG L  A +FV+RMP + D ++
Sbjct: 472 THLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVI 531

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             ALLGAC+  KN D+++  +Q L+ +E  N  NYV+ S I+ +L  W D A+++ LMR+
Sbjct: 532 WAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRD 591

Query: 544 KGVSKTPGCSWIGIDD 559
            G  K PGCS I ++D
Sbjct: 592 TGSKKLPGCSLIEVND 607


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 200/554 (36%), Positives = 321/554 (57%), Gaps = 30/554 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFI---QKPNFL-LIRIIDLKDFNYAS-----LLFHQ 77
           L+SL KK  + +  +QI + ++ + +   Q  N L L +++    F+        LLF  
Sbjct: 11  LVSLFKKHQTLEQCKQIQSIIVTSGLYSTQDNNTLFLTKLLQCVPFSQNQNTCLLLLFDT 70

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           I+ PN    N MI   +     + H SL  Y ++++ G++PD  T+P +  + +  +A N
Sbjct: 71  INTPNTRLLNKMIAACS-----HPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKSIAQN 125

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
               +++ +FK+G D D  + ++LI  +A  G ++SAR+VFDE   +D V+W ++I+GY 
Sbjct: 126 -PFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYV 184

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNF 255
           K     EA++ F +MR  +   D +T+ S+L +   +GD   G+WV GF V+  ++ L+ 
Sbjct: 185 KNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDG 244

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           Y+ SAL+DMY KCG    A +VF+ + ++DVV W  ++  Y Q+    +A+  F  M   
Sbjct: 245 YVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSD 304

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
            V P+  TL  VLSACA +GALD G+ V +Y     +  ++            CGSID+A
Sbjct: 305 NVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEA 364

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           L+VFE+MPV N  +W  +I+ LA +G A  AL +F  M K G   +PN+VTF+GVL+AC 
Sbjct: 365 LRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSG--IQPNEVTFVGVLAACS 422

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H G V+EG+RLF+LM  ++ L P+ +HY CMVD+  RAG+L +A   ++ MP K    VL
Sbjct: 423 HGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVL 482

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           GAL GAC   K  ++ + +  LL+  + ++SG+Y + + ++   + W+ +A++R LM+  
Sbjct: 483 GALFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGL 542

Query: 545 GVSKTPGCSWIGID 558
            V K PG S I +D
Sbjct: 543 RVVKAPGYSRIEVD 556


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 282/496 (56%), Gaps = 14/496 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +I  P+  +++ +I  L    Q    + +++ +M+  G+ P+ FT   +  +  +L 
Sbjct: 387 VFVRIEDPDVVSWSAIITCLDQKGQS-REAAEVFKRMRHSGVIPNQFTLASLVSAATDLG 445

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L +G S+H+ V K G + D+ V ++L+TMY + G +    +VF+    RDL+SWN+++S
Sbjct: 446 DLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLS 505

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G+         + +F +M  E F P+  T +S+L SC  L D+ LGK V   +VKN +D 
Sbjct: 506 GFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 565

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++G+AL+DMY K   L  A  +F+ ++ +D+  W  ++  YAQ+G   +A+  F +M+
Sbjct: 566 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 625

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV P++ TL   LS C+ I  LD G+ +   A + G   D+F           CG ++
Sbjct: 626 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 685

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA  VF+ +   + VSWN +I   + +G+  +AL  FE M  EG    P++VTFIGVLSA
Sbjct: 686 DAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV--PDEVTFIGVLSA 743

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GL++EG++ F+ +S  +G+ P  EHY+CMVD+  RAG   E   F+E M    + +
Sbjct: 744 CSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVL 803

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +   +LGAC+   N +  +R    L E+E     NY++ S +FA   MWDD   +RALM 
Sbjct: 804 IWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMS 863

Query: 543 EKGVSKTPGCSWIGID 558
            +GV K PGCSW+ ++
Sbjct: 864 TRGVKKEPGCSWVEVN 879



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 243/467 (52%), Gaps = 22/467 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +L+ C S   + +   IH Q++ + I   + L   ++++       NYA  +F +I   +
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  +I G   A    S ++ L+ +M+R G++ + FTY     +C+  L L  G  VH
Sbjct: 194 VVSWTALITGFV-AEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVH 252

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +   K+G   D  V  +L+ +YA+CG++  A +VF  + +++ VSWN++++G+++MG A+
Sbjct: 253 AEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAE 312

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           + + LF RM   E    + TL +VL  C + G+L  G+ V    ++   +L+ ++   L+
Sbjct: 313 KVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLV 372

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG    A +VF  + + DVV+W+A+IT   Q G S EA  +F RM+++GV P++ 
Sbjct: 373 DMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQF 432

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHD-IFC----------GSIDDALKVFEDM 371
           TL  ++SA   +G L  G+ +     + G  +D   C          GS+ D  +VFE  
Sbjct: 433 TLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEAT 492

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + +SWNA++S    N      L +F +M  EG    PN  TFI +L +C     VD 
Sbjct: 493 TNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEG--FNPNMYTFISILRSCSSLSDVDL 550

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           G+++   +  +  L       + +VD+YA+   L +A     R+ ++
Sbjct: 551 GKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 596



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 202/398 (50%), Gaps = 15/398 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +  +CA+   LN G ++H  V K G++ D H+ +SL+ +YA+CG  + A KVF EI 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ERD+VSW ++I+G+   GY   AV LF  MR E    +E T  + L +C    DL  GK 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V    +K     + ++GSAL+D+Y KCG +V A RVF  M  ++ V+WNA++  +AQ G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           + + + LF RM  + +N  K TL  VL  CA+ G L  G+ V   A + G   D F    
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG   DALKVF  +   + VSW+A+I+ L   G++ EA  +F+RM   G    
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG--VI 428

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN  T   ++SA    G +  G  +   +   +G    +   + +V +Y + G + +   
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACV-CKYGFEYDNTVCNALVTMYMKIGSVQDGCR 487

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
             E    + D I   ALL      +  D   R+   +L
Sbjct: 488 VFEATTNR-DLISWNALLSGFHDNETCDTGLRIFNQML 524



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 212/409 (51%), Gaps = 15/409 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  + + N  ++N ++ G           L L+ +M    +    FT   V   CA
Sbjct: 283 AERVFLCMPKQNAVSWNALLNGFAQMGDA-EKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N   L  G  VHS   +IG + D+ +S  L+ MY++CG    A KVF  I + D+VSW++
Sbjct: 342 NSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSA 401

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+   + G ++EA E+F RMR    +P++ TL S++ +  DLGDL  G+ +   V K  
Sbjct: 402 IITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYG 461

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            + +  + +AL+ MY K G++    RVF+A  N+D+++WNA+++ +  N   +  + +FN
Sbjct: 462 FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFN 521

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS---------- 360
           +M   G NP+  T I +L +C+S+  +DLGK V     +  L  + F G+          
Sbjct: 522 QMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNR 581

Query: 361 -IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            ++DA  +F  +   +  +W  +++  A +G+  +A+  F +M +EG   +PN+ T    
Sbjct: 582 FLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG--VKPNEFTLASS 639

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           LS C     +D GR+L   M+   G        S +VD+YA+ G + +A
Sbjct: 640 LSGCSRIATLDSGRQLHS-MAIKAGQSGDMFVASALVDMYAKCGCVEDA 687


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 317/566 (56%), Gaps = 40/566 (7%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQ-KPNF------------LLIRIID-LK 66
           S +  K LSLL++  +   + QIH  ML N ++  PN             LL  + D L 
Sbjct: 149 SPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYDPLA 208

Query: 67  DFNYASLLF-HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPF 124
              +A  +F H+  R + +  N MI+      ++YS S  LY  ++R     PD+FT+  
Sbjct: 209 GIVHARRMFDHRPHRDDAFLCNSMIKAYV-GMRQYSESFALYRDLRRNTSFTPDSFTFSV 267

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +  SCA  +A+  G  +HS V  +G   D + + +L+ MYA+ GK+D ARK+FDE+ +R 
Sbjct: 268 LAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRS 327

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
            VSW ++I GY + G    A +LF +M E+    D     +++ +   LGD+   +    
Sbjct: 328 QVSWTALIGGYVRSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSAR---- 379

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            +     + +    + +I  Y   G L  AR +FDAM  K++ +WNAMI+ Y QN    E
Sbjct: 380 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYE 439

Query: 305 AIMLFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--------- 354
           A+ LF+ M+    + PD++T++ VL A A +GALDLG WV ++  ++ L           
Sbjct: 440 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALI 499

Query: 355 DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           D++  CG I  +  VF++MP     SWNA+I+A A NGRA EAL LF  M+ +G    PN
Sbjct: 500 DMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG--FMPN 557

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
           ++T IGVLSAC H+GLV+EG+R F  M   FGL PK EHY CMVDL  RAG L EA   +
Sbjct: 558 EITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQEAEKLM 616

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           E MP + + I+L + L AC   K+   ++RV++  +++E+ N GNY++   ++AN K W 
Sbjct: 617 ESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWK 676

Query: 533 DSAKMRALMREKGVSKTPGCSWIGID 558
           ++ +++ LMR  GV K  GCS I +D
Sbjct: 677 EADEVKGLMRRNGVKKEAGCSAIEVD 702


>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
          Length = 573

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 299/555 (53%), Gaps = 69/555 (12%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL--KDFNYASLLFHQIS 79
            L+ +LL+ + +C + ++++QIH  ++ + +    F+L ++ +   K   +    F  ++
Sbjct: 3   FLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLN 62

Query: 80  RPNEYA----FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           + + +     +N +I    ++    +  L +Y ++   G  PD +T+P V  +C   L +
Sbjct: 63  QTDLHVGTLPYNTLIAAYASSCTPKAAFL-VYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  VH    K+G   D +V +SL+  Y+ CGK   A +VFDE+  RD+VSW  +ISGY
Sbjct: 122 QEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGY 181

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            + G   EA+ LF +M   + +P+  T VSVL +CG +G L +GK V G V K    +  
Sbjct: 182 VRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGL 238

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            +G+AL+DMY KC  L  AR++FD + ++D+V+W ++I+   Q     +++ LF  M+ +
Sbjct: 239 VVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQIS 298

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           GV PD+I L  VLSACAS+GALD G+WV +Y  ++G+  DI            CG I+ A
Sbjct: 299 GVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMA 358

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           L +F  +P  N  +WNA++  LA +G  HEAL  FE M   G   RPN+VTF+ +L+AC 
Sbjct: 359 LHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI--GAGIRPNEVTFLAILTACC 416

Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
           H+GLV EGR  F  ++S  F   P+ EHY CM+DL  RAG L EA++             
Sbjct: 417 HSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYN------------- 463

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
                                           G YV+ S I+A  + WDD  ++R LM++
Sbjct: 464 --------------------------------GVYVLLSNIYATNERWDDVTRVRRLMKD 491

Query: 544 KGVSKTPGCSWIGID 558
           KG+ K PG S I +D
Sbjct: 492 KGIRKFPGSSVIEVD 506


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 188/503 (37%), Positives = 280/503 (55%), Gaps = 50/503 (9%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           ++L +Y Q++++  + DNF  P V  +C  +     G  +H  V K GLD D  V ++L+
Sbjct: 107 NALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALM 166

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MY  C  ++ AR VFD++ ERD+VSW++MI   S+      A+EL   M   +  P E+
Sbjct: 167 LMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEV 226

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG----SALIDMYGKCGAL------ 271
            +VS++    D  ++ +GK +  +V++N    N +MG    +AL+DMY KCG L      
Sbjct: 227 AMVSMVNLFADTANMRMGKAMHAYVIRNSN--NEHMGVPTTTALLDMYAKCGHLGLARQL 284

Query: 272 -------------------------VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
                                      AR +FD+  N+DV+ W AM++AYAQ    ++A 
Sbjct: 285 FNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF 344

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF++M+ +GV P K+T++ +LS CA  GALDLGKWV  Y  +  +  D           
Sbjct: 345 NLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMY 404

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG I+ A ++F +    +   WNA+I+  A +G   EAL +F  M ++G   +PND+T
Sbjct: 405 AKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQG--VKPNDIT 462

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           FIG+L AC HAGLV EG++LF+ M  +FGL+P+ EHY CMVDL  RAG L EA + ++ M
Sbjct: 463 FIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM 522

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P K + IV GAL+ AC+  KN  + +     LLEIE  N G  V+ S I+A    W D+A
Sbjct: 523 PIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAA 582

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            +R  M+  G+ K PG S I ++
Sbjct: 583 GVRKTMKTVGMKKEPGHSVIEVN 605



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 208/414 (50%), Gaps = 62/414 (14%)

Query: 29  SLLKKCPS---TKTVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
           S+LK C     T+  ++IH  +L   + +     N L++   +     YA L+F ++   
Sbjct: 129 SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 188

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA----LNH 137
           +  +++ MIR L+   +++  +L+L  +M  + ++P         +S  NL A    +  
Sbjct: 189 DVVSWSTMIRSLSRN-KEFDMALELIREMNFMQVRPSE----VAMVSMVNLFADTANMRM 243

Query: 138 GVSVHSSVFKIGLDEDDHV--SHSLITMYARCG--------------------------- 168
           G ++H+ V +   +E   V  + +L+ MYA+CG                           
Sbjct: 244 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 303

Query: 169 ----KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
               +L+ AR +FD  + RD++ W +M+S Y++     +A  LF +MR     P ++T+V
Sbjct: 304 IRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIV 363

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           S+L  C   G L LGKWV  ++ K +++++  + +AL+DMY KCG +  A R+F   +++
Sbjct: 364 SLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISR 423

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV- 343
           D+  WNA+IT +A +G   EA+ +F  M+  GV P+ IT IG+L AC+  G +  GK + 
Sbjct: 424 DICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF 483

Query: 344 DKYASQRGLRHDI-----------FCGSIDDALKVFEDMPV-TNEVSWNAMISA 385
           +K     GL   I             G +D+A ++ + MP+  N + W A+++A
Sbjct: 484 EKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAA 537



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 168/333 (50%), Gaps = 25/333 (7%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN +I+ Y+K    + A+ ++ ++R+ +F  D     SVL +CG +    LGK + GFV+
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K  +D + ++G+AL+ MYG+C  +  AR VFD M+ +DVV+W+ MI + ++N   + A+ 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DI 356
           L   M +  V P ++ ++ +++  A    + +GK +  Y  +                D+
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 357 F--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
           +  CG +  A ++F  +     VSW AMI+    + R  EA  LF+       + +  DV
Sbjct: 272 YAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFD-------STQNRDV 324

Query: 415 -TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA-W--D 470
             +  +LSA   A  +D+   LFD M +S G+ P       ++ L A AG L    W   
Sbjct: 325 MIWTAMLSAYAQANCIDQAFNLFDQMRTS-GVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           ++++   +VD I+  AL+    K  + + + R+
Sbjct: 384 YIDKERVEVDCILNTALVDMYAKCGDINAAGRL 416


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 189/549 (34%), Positives = 304/549 (55%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +Q   Q+H+ +    I     +   ++DL     D   A ++F+   R 
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +N+M+          + S +L+ QM+  G++P+ FTYP +  +C     ++ G  +
Sbjct: 309 NVVLWNLMLVAFGQI-NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI 367

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS   K G + D +VS  LI MY++ G L+ AR+V + ++E+D+VSW SMI+GY +    
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           K+A+  F  M++    PD I L S +  C  +  +  G  +   +  +    +  + +AL
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNAL 487

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +++Y +CG +  A   F+ M  KD +T N +++ +AQ+GL  EA+ +F RM  +GV  + 
Sbjct: 488 VNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T +  LSA A++  +  GK +     + G   +             CGS +DA   F +
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   NEVSWN +I++ + +GR  EAL LF++M KEG   +PNDVTFIGVL+AC H GLV+
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEG--IKPNDVTFIGVLAACSHVGLVE 665

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F  MS  +G+ P+ +HY+C++D++ RAG L  A  F+E MP   D +V   LL A
Sbjct: 666 EGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSA 725

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN +V +   + LLE+E  +S +YV+ S  +A  + W +  ++R +MR++GV K P
Sbjct: 726 CKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEP 785

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 786 GRSWIEVKN 794



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 224/456 (49%), Gaps = 19/456 (4%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGL 93
           + V +IH + +   + K   +   +IDL   N     A  +F ++S  +  ++  M+ G 
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
                    +L LY QM R G+ P  +    V  SC        G  +H+  +K G   +
Sbjct: 119 AQNGLG-EEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V +++IT+Y RCG    A +VF ++  RD V++N++ISG+++ G+ + A+E+F  M+ 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD +T+ S+L +C  LGDL  G  +  ++ K  +  ++ M  +L+D+Y KCG +  
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A  +F++    +VV WN M+ A+ Q     ++  LF +M+ AG+ P++ T   +L  C  
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 334 IGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAM 382
              +DLG+ +   + + G   D++            G ++ A +V E +   + VSW +M
Sbjct: 358 TREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I+    +    +AL  F+ M K G    P+++     +S C     + +G ++   +  S
Sbjct: 418 IAGYVQHECCKDALAAFKEMQKCG--IWPDNIGLASAISGCAGINAMRQGLQIHARIYVS 475

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            G       ++ +V+LYAR G + EA+   E M  K
Sbjct: 476 -GYSGDVSIWNALVNLYARCGRIREAFSSFEEMELK 510


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/484 (39%), Positives = 281/484 (58%), Gaps = 18/484 (3%)

Query: 86  FNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           +NV +R L  A+Q  +S S+ LY  M R G  PD F++PF+  SCA+L     G  +H  
Sbjct: 21  WNVRLREL--AYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 78

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS--WNSMISGYSKMGYAK 202
           V K G + +  V  +LI+MY +CG +  ARKVF+E  +   +S  +N++ISGY+      
Sbjct: 79  VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A  +F RM+E     D +T++ ++  C     L LG+ + G  VK  +D    + ++ I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG++   RR+FD M  K ++TWNA+I+ Y+QNGL+ + + L+ +MK +GV PD  
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL+ VLS+CA +GA  +G  V K     G   ++F           CG++  A  VF+ M
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           PV + VSW AMI     +G     L+LF+ M K G   RP+   F+ VLSAC H+GL D+
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRG--IRPDGAVFVMVLSACSHSGLTDK 376

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G  LF  M   + L P  EHYSC+VDL  RAG L EA +F+E MP + D  V GALLGAC
Sbjct: 377 GLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGAC 436

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  KN D+++     ++E E +N G YV+ S I+++ K  +   ++R +MRE+   K PG
Sbjct: 437 KIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPG 496

Query: 552 CSWI 555
            S++
Sbjct: 497 YSYV 500



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 209/414 (50%), Gaps = 27/414 (6%)

Query: 30  LLKKCPSTK---TVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LK C S     + QQ+H  +     +   F+L  +I +         A  +F +  + +
Sbjct: 59  ILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSS 118

Query: 83  EYA--FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           + +  +N +I G T A  K + +  ++ +MK  G+  D+ T   +   C     L  G S
Sbjct: 119 QLSVCYNALISGYT-ANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K GLD +  V +S ITMY +CG +++ R++FDE+  + L++WN++ISGYS+ G 
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A + +EL+ +M+     PD  TLVSVL SC  LG   +G  V   V  N    N ++ +A
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNA 297

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
            I MY +CG L  AR VFD M  K +V+W AMI  Y  +G+    +MLF+ M   G+ PD
Sbjct: 298 SISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357

Query: 321 KITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVF 368
               + VLSAC+  G  D G  +      +Y  + G  H     D+    G +D+A++  
Sbjct: 358 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 417

Query: 369 EDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           E MPV  +   W A++ A   +     A L F ++ +      PN++ +  ++S
Sbjct: 418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE----FEPNNIGYYVLMS 467


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/496 (36%), Positives = 296/496 (59%), Gaps = 16/496 (3%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F ++   +  A+N M+ GL     + + ++ L+ +M   G+  D  T   V   C  L  
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRN-ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGD 185

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
               +++H    K GLD++  V +++I +Y + G L+  RKVFD +  RDLV+WNS+ISG
Sbjct: 186 RALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISG 245

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL- 253
           + + G    AVE+F  MR+    PD +TL+S+  +    GD+  G+ V  ++V+   D+ 
Sbjct: 246 HEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG 305

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM- 312
           +   G+A++DMY K   +  A+R+FD+M  +D V+WN +IT Y QNGL++EAI +++ M 
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           K+ G+ P + T + VL A + +GAL  G  +   + + GL  D++           CG +
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKL 425

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           D+A+ +FE  P  +   WNA+IS +  +G   +AL LF +M +EG    P+ VTF+ +L+
Sbjct: 426 DEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEG--ISPDHVTFVSLLA 483

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAGLVD+GR  F++M +++G+ P ++HY+CMVD++ RAG L +A+DF+  MP K D 
Sbjct: 484 ACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDS 543

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
            + GALLGAC+   N ++ +   Q L E++  N G YV+ S ++A +  WD   ++R+L+
Sbjct: 544 AIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLV 603

Query: 542 REKGVSKTPGCSWIGI 557
           R + + KTPG S I +
Sbjct: 604 RRQNLQKTPGWSSIEV 619



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 18/374 (4%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDSARKV 176
           D FT+P +  +            +H+   ++GL   D   S +L+  Y R G++  A + 
Sbjct: 70  DAFTFPPLLRAAQ---GPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
           FDE+R RD+ +WN+M+SG  +   A EAV LFGRM  E    D +T+ SVL  C  LGD 
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
            L   +  + VK+ +D   ++ +A+ID+YGK G L   R+VFD M ++D+VTWN++I+ +
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR-HD 355
            Q G    A+ +F  M+ +GV+PD +TL+ + SA A  G +  G+ V  Y  +RG    D
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 356 IFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           I  G+           I+ A ++F+ MPV + VSWN +I+    NG A EA+ +++ M K
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQK 366

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
             G  +P   TF+ VL A  H G + +G R+  L S   GL       +C++DLYA+ G 
Sbjct: 367 HEG-LKPIQGTFVSVLPAYSHLGALQQGTRMHAL-SIKTGLNLDVYVGTCVIDLYAKCGK 424

Query: 465 LSEAWDFVERMPEK 478
           L EA    E+ P +
Sbjct: 425 LDEAMLLFEQTPRR 438


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/515 (35%), Positives = 287/515 (55%), Gaps = 18/515 (3%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           F++  ++D+    +D   A  +F +I   N  ++  MI G        S  L L+ +M++
Sbjct: 201 FVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFA-SDGLLLFNKMRQ 259

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
             + P  +T   V  +C+ L  L+ G  +H SV K GL  +  +S +L+ MY +CG+LD 
Sbjct: 260 DNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDH 319

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR VFDE+   DLV W +MI GY++ G   +A+ LF   R     P+ +T  +VL +   
Sbjct: 320 ARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQ 379

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L DL LGK + G  VK  +     +G+AL+DMY KC A+  A R+F  + NKDVV WN+M
Sbjct: 380 LRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSM 439

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I+ YA+N + ++A+MLF +M   G +PD I+++  LSA   +G L +GK +  YA +   
Sbjct: 440 ISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAF 499

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +I+           CG +  A +VF++M   N V+W AMI      G +  ++ LF  
Sbjct: 500 VSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGE 559

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M K+G    PND+ F  +LS C H+G+V  G+R FD M+  F + P  +HY+CMVD+ AR
Sbjct: 560 MLKDG--VYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLAR 617

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG+L +A +F++ MP + D  V GA L  C+       ++  ++ ++ +       YV+ 
Sbjct: 618 AGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLI 677

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
           S ++ +  MWD S  +R  M+EKG+ K PGCS +G
Sbjct: 678 SNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSVG 712



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 148/492 (30%), Positives = 258/492 (52%), Gaps = 27/492 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQML-------INFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           LL LL  C +  +++ +H ++L       +  ++    LL     L D   A ++F    
Sbjct: 65  LLRLLPSCGTLLSLRVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 124

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP---DNFTYPFVFISCANLLALN 136
           RP+ Y++  M+  L    ++++ ++ L++ M+R    P   D+F       +C      +
Sbjct: 125 RPDAYSYGAMLWCLVQT-ERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYS 183

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
           +G S+H    K+G   D  V +SL+ MYA+   L+ ARKVF+ I +R++VSW SMISG  
Sbjct: 184 YGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCV 242

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G+A + + LF +MR++   P E T+ +V+ +C  L  L  G+W+ G V+K  +  N +
Sbjct: 243 QNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSF 302

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +AL+DMY KCG L  AR VFD +   D+V W  MI  Y QNG   +A+ LF   ++A 
Sbjct: 303 ISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFAN 362

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDAL 365
           + P+ +T   VLSA A +  L LGK +   A + GL           D++  C ++ +A 
Sbjct: 363 IAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEAD 422

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           ++F  +   + V+WN+MIS  A N    +AL+LF++MS +G +  P+ ++ +  LSA V 
Sbjct: 423 RIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSS--PDAISVVNALSASVC 480

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            G +  G+ +    +     +      + +++LY + G L  A    + M ++ + +   
Sbjct: 481 LGDLLIGKSIHGY-AVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDR-NSVTWC 538

Query: 486 ALLGACQKQKNT 497
           A++G    Q ++
Sbjct: 539 AMIGGYGMQGDS 550


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 310/550 (56%), Gaps = 22/550 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQM----LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           S+LK C   + V   Q IHT +    L+  I   + L+       +F  A  LF ++   
Sbjct: 111 SVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDK 170

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +N +I     +  K+  +L+ +  M+R G +PD+ T      SCA LL L+ G  +
Sbjct: 171 DVACWNTVISCYYQS-GKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREI 229

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  +   G   D  VS +L+ MY +CG+L+ A +VF+++  + +V+WNSMI+GY   G  
Sbjct: 230 HKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDG 289

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
              ++LF RM  E   P   TL S L +C     L+ GK+V G++++N++  + ++ S+L
Sbjct: 290 ISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSL 349

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +D+Y KCG +  A  +F  M     V+WN MI+ Y   G   +A+ LF  M  + V PD 
Sbjct: 350 MDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDA 409

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFED 370
           IT   VL+AC+ + AL+ G+ +     +R L +         D++  CG++++A  VF+ 
Sbjct: 410 ITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKC 469

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +P  + VSW +MI+A   +GR +EAL LF  M +     +P+ VTF+ +LSAC HAGLVD
Sbjct: 470 LPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSN--VKPDRVTFLAILSACSHAGLVD 527

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLG 489
           +G   F+ M + +G+IP+ EHYSC++ L  RAG L EA++ ++  PE  D+  +L  L  
Sbjct: 528 DGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFS 587

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           AC+  KN D+   + + L++ +  +S  Y+I S ++A+   WD+   +R+ M++ G+ K 
Sbjct: 588 ACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKN 647

Query: 550 PGCSWIGIDD 559
           PGCSWI I++
Sbjct: 648 PGCSWIEINE 657



 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 251/475 (52%), Gaps = 28/475 (5%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           KL+ LL+   ++K+++Q   +H +++   +Q   ++   +I L      F+YA  +F  I
Sbjct: 5   KLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVI 64

Query: 79  SRPNEYAFNVMIRGLTTAWQK---YSHSLKLYYQ-MKRLGLKPDNFTYPFVFISCANLLA 134
             P E +   +  GL   + +   Y  +L L+ + M    LKPD++TYP V  +C  L  
Sbjct: 65  ENPFEIS---LCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  G  +H+ + K GL  D  V  SL+ MYA+C + + A K+FDE+ ++D+  WN++IS 
Sbjct: 122 VVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISC 181

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y + G  +EA+  FG MR   F PD +T+ + + SC  L DL  G+ +   +V +   ++
Sbjct: 182 YYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMD 241

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++ +AL+DMYGKCG L  A  VF+ M NK VV WN+MI  Y   G     I LF RM  
Sbjct: 242 SFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYS 301

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            GV P   TL   L AC+    L  GK+V  Y  +  ++ DIF           CG ++ 
Sbjct: 302 EGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVES 361

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  +F+ MP T  VSWN MIS     G+  +AL LF  MSK      P+ +TF  VL+AC
Sbjct: 362 AETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSK--SFVEPDAITFTSVLAAC 419

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                +++GR + +L+     L         ++D+YA+ G + EA+   + +PE+
Sbjct: 420 SQLAALEKGREIHNLIVER-NLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPER 473


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 294/525 (56%), Gaps = 50/525 (9%)

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +PN  ++  +I G       +  +L ++ +M   G+KP++ T      +C NL  L HG 
Sbjct: 324 KPNVVSWTALIAGSEQNGYDF-EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382

Query: 140 SVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            +H    K+  LD D  V +SL+  YA+C  ++ AR+ F  I++ DLVSWN+M++GY+  
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442

Query: 199 GYAKEAVELFGRMREEEFLPDEIT-----------------------------------L 223
           G  +EA+EL   M+ +   PD IT                                   +
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTI 502

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
              L +CG + +L LGK + G+V++N ++L+  +GSALI MY  C +L  A  VF  +  
Sbjct: 503 SGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELST 562

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +DVV WN++I+A AQ+G S  A+ L   M  + V  + +T++  L AC+ + AL  GK +
Sbjct: 563 RDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI 622

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            ++  + GL    F           CGSI  + ++F+ MP  + VSWN MIS    +G  
Sbjct: 623 HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 682

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            +A+ LF++    G   +PN +TF  +LSAC H+GL++EG + F +M + + + P  E Y
Sbjct: 683 MDAVNLFQQFRTMG--LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 740

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +CMVDL +RAG  +E  +F+E+MP + +  V G+LLGAC+   N D+++   + L E+E 
Sbjct: 741 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP 800

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            +SGNYV+ + I++    W+D+AK+R LM+E+GV+K PGCSWI +
Sbjct: 801 QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 215/466 (46%), Gaps = 63/466 (13%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL--- 65
           L+  +L +P    E   S+L+KC     ++   Q+H Q+++N +    FL  R++++   
Sbjct: 77  LSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ 136

Query: 66  -KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
                 A  +F ++S  N +++  ++  +      Y  ++KL+Y M   G++PD+F +P 
Sbjct: 137 TGCVEDARRMFDKMSERNVFSWTAIME-MYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           VF +C+ L     G  V+  +  IG + +  V  S++ M+ +CG++D AR+ F+EI  +D
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +  WN M+SGY+  G  K+A++    M+     PD++T                  W   
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT------------------W--- 294

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-----VNKDVVTWNAMITAYAQN 299
                         +A+I  Y + G    A + F  M        +VV+W A+I    QN
Sbjct: 295 --------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQN 340

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF- 357
           G   EA+ +F +M   GV P+ IT+   +SAC ++  L  G+ +  Y  +   L  D+  
Sbjct: 341 GYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 400

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     C S++ A + F  +  T+ VSWNAM++  A  G   EA+ L   M  +G 
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG- 459

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
              P+ +T+ G+++     G        F  M  S G+ P +   S
Sbjct: 460 -IEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTIS 503


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 307/553 (55%), Gaps = 23/553 (4%)

Query: 30  LLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLK C      K  ++IH Q++ N      F +  ++++    +  + A  +F ++   +
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD 212

Query: 83  EYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N +I G +   + K   +L+L  +M+  G +PD+ T   V  + A++  L  G S+
Sbjct: 213 LVSWNTIIAGFSQNGFAK--KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    + G  +  ++S +L  MY++CG +++AR +FD + ++ +VSWNSM+ GY + G  
Sbjct: 271 HGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEP 330

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++A+ +F +M EE   P  +T++  L +C DLGDL  GK+V  FV +  +  +  + ++L
Sbjct: 331 EKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSL 390

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KC  +  A  +F+ +  +  V+WNAMI  YAQNG  +EA+  F+ MK  G+ PD 
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDS 450

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T++ V+ A A +      KW+     +  L  +IF           CG+I  A K+F+ 
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   + ++WNAMI     +G    AL LF++M K  GA  PND+T++ V+SAC H+GLVD
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKK--GAVEPNDITYLSVISACSHSGLVD 568

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG R F  M   +GL P  +HY  MVDL  RAG + EAWDF+E MP      V GA  GA
Sbjct: 569 EGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGA 628

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN +V ++  + L E+     G +V+ + I+A+   W   A++R  M +KG+ KTP
Sbjct: 629 CKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTP 688

Query: 551 GCSWIGIDDPKQS 563
           GCS + + +   S
Sbjct: 689 GCSVVELRNEVHS 701



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/526 (29%), Positives = 254/526 (48%), Gaps = 61/526 (11%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           LL+ C S K + QI   ++ N +   +    +++ L       N A+ +F  I    +  
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           ++ M++G          +L    +M+   +KP  + + ++   C +   L  G  +H  +
Sbjct: 115 YHTMLKGYAKN-SSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
                  +      ++ MYA+C ++D A K+FD + ERDLVSWN++I+G+S+ G+AK+A+
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           EL  RM++E   PD ITLV+VL +  D+G L++GK + G+ ++        + +AL DMY
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG++  AR +FD M  K VV+WN+M+  Y QNG   +AI +F +M   G++P  +T++
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
             L ACA +G L+ GK+V K+  Q  L  DI            C  +D A  +F ++   
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV------LSACVHA-- 426
             VSWNAMI   A NGR  EAL  F  M   G   +P+  T + V      LS   HA  
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLG--MKPDSFTMVSVIPALAELSVTRHAKW 471

Query: 427 ---------------------------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
                                      G +   R+LFD++S    +      ++ M+D Y
Sbjct: 472 IHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT-----WNAMIDGY 526

Query: 460 ARAGHLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQR 502
              G    A D  ++M +   + ++I   +++ AC      D   R
Sbjct: 527 GTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR 572


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 309/556 (55%), Gaps = 26/556 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID------LKDFNYASLLFHQISR 80
           +LS L+KC + K ++QIH+ M+   + K      R+ID      L D  YA  +F Q  +
Sbjct: 8   ILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQ 67

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              Y +N MI+G      K+  +L +Y +M+R G  PD+FT+PFV   C+ +  L +G S
Sbjct: 68  LTVYVWNSMIKGYCNGGDKFG-ALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQS 126

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ + K G + D + S  L+ MY  CG L+S  KVF+ I + ++V+W S+I+G+     
Sbjct: 127 VHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQ 186

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD-------L 253
            KEA+ LF  M  E   P+EIT+ + L +     D+  GK V   + +  +D        
Sbjct: 187 PKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRF 246

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMY KCG LV AR +FD M  +++V WN+MI+A++Q G   EA+ LF  M+
Sbjct: 247 NVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDME 306

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFC--GSID 362
            AG  P+K T + V+ AC  +     G+ +     +              D++   G  D
Sbjct: 307 LAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDAD 366

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            ALK+F  +   + ++W  MIS LA  G+  EAL +F RM +E   A P+ +T+I VL A
Sbjct: 367 TALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVA-PDQITYIAVLWA 425

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GLV+EG++ F  M   +G+ P  EHY CM+DL +RAGH  EA + + +MP + +  
Sbjct: 426 CSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNAT 485

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +L ++L  C+   N  ++ RV   ++E+++S+SG YV+ S I A    W++    R +++
Sbjct: 486 ILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDILK 545

Query: 543 EKGVSKTPGCSWIGID 558
            K + KT G S++ ++
Sbjct: 546 HKKIGKTLGNSFVEMN 561


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 189/579 (32%), Positives = 310/579 (53%), Gaps = 50/579 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISR-P 81
           +L  L  C S   ++Q+H  +L   I       +  +     +    YA  LF  IS  P
Sbjct: 18  ILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLP 77

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
               FN ++R L+ + +  + ++  Y +++ +G + D  ++P +  + + + AL  G+ +
Sbjct: 78  ESIVFNSLLRDLSRSGEPRA-TILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMEL 136

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H   FKI    D  V   L+ MYA CG+++ AR VFDE+ +RD+V+WN+MI  Y + G  
Sbjct: 137 HGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLL 196

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDL------ 253
            EA +LF  M++   +PDE+ L +++ +CG  G++   + +  F+++N  +MD       
Sbjct: 197 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTAL 256

Query: 254 -----------------------NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
                                  N ++ +A++  Y K G L  AR +FD    KD+V W 
Sbjct: 257 VTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWT 316

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            MI+AYA++    EA+ +F  M  +G+ PD +T++ V+SAC ++G LD  KWV +Y    
Sbjct: 317 TMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLN 376

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           GL   +            CG +D A  VFE MP  N VSW++MI+A A +G A ++L LF
Sbjct: 377 GLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLF 436

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            +M +E     PN+VTF+GVL  C H+GLV+EG+++F  M+  + + PK EHY CMVDL+
Sbjct: 437 AQMKQEN--VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLF 494

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA + +E MP   + ++ G+L+ AC+     ++ +   + +L++E  + G  V
Sbjct: 495 GRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALV 554

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + S I+A    WD    +R +M +K V K  G S I ++
Sbjct: 555 LMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLN 593


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 293/525 (55%), Gaps = 50/525 (9%)

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +PN  ++  +I G       +  +L ++ +M   G+KP++ T      +C NL  L HG 
Sbjct: 324 KPNVVSWTALIAGSEQNGYDF-EALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382

Query: 140 SVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            +H    K+  LD D  V +SL+  YA+C  ++ AR+ F  I++ DLVSWN+M++GY+  
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442

Query: 199 GYAKEAVELFGRMREEEFLPDEIT-----------------------------------L 223
           G  +EA+EL   M+ +   PD IT                                   +
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTI 502

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
              L +CG + +L LGK + G+V++N ++L+  +GSALI MY  C +L  A  VF  +  
Sbjct: 503 SGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELST 562

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +DVV WN++I+A AQ+G S  A+ L   M  + V  + +T++  L AC+ + AL  GK +
Sbjct: 563 RDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI 622

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            ++  + GL    F           CGSI  + ++F+ MP  + VSWN MIS    +G  
Sbjct: 623 HQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFG 682

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            +A+ LF+     G   +PN +TF  +LSAC H+GL++EG + F +M + + + P  E Y
Sbjct: 683 MDAVNLFQXFRTMG--LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 740

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +CMVDL +RAG  +E  +F+E+MP + +  V G+LLGAC+   N D+++   + L E+E 
Sbjct: 741 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP 800

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            +SGNYV+ + I++    W+D+AK+R LM+E+GV+K PGCSWI +
Sbjct: 801 QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 215/466 (46%), Gaps = 63/466 (13%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL--- 65
           L+  +L +P    E   S+L+KC     ++   Q+H Q+++N +    FL  R++++   
Sbjct: 77  LSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ 136

Query: 66  -KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
                 A  +F ++S  N +++  ++  +      Y  ++KL+Y M   G++PD+F +P 
Sbjct: 137 TGCVEDARRMFDKMSERNVFSWTAIME-MYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 195

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           VF +C+ L     G  V+  +  IG + +  V  S++ M+ +CG++D AR+ F+EI  +D
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +  WN M+SGY+  G  K+A++    M+     PD++T                  W   
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVT------------------W--- 294

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-----VNKDVVTWNAMITAYAQN 299
                         +A+I  Y + G    A + F  M        +VV+W A+I    QN
Sbjct: 295 --------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQN 340

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF- 357
           G   EA+ +F +M   GV P+ IT+   +SAC ++  L  G+ +  Y  +   L  D+  
Sbjct: 341 GYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 400

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     C S++ A + F  +  T+ VSWNAM++  A  G   EA+ L   M  +G 
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQG- 459

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
              P+ +T+ G+++     G        F  M  S G+ P +   S
Sbjct: 460 -IEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDPNTTTIS 503


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 200/592 (33%), Positives = 309/592 (52%), Gaps = 52/592 (8%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
           T+ +    ++ +L+    KC   +  +++  +M        N +L  +      + A  +
Sbjct: 48  TQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNV 107

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F  +  P++ ++N M+ G      ++  +L+ +  M       + +++     +CA L  
Sbjct: 108 FKSMPEPDQCSWNAMVSGFAQH-DRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTD 166

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           LN G+ +H+ + K     D ++  +L+ MY++CG +  A++ FD +  R++VSWNS+I+ 
Sbjct: 167 LNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITC 226

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDL 253
           Y + G A +A+E+F  M +    PDEITL SV+ +C     +  G  +   VVK +K   
Sbjct: 227 YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAM-------------------------------V 282
           +  +G+AL+DMY KC  +  AR VFD M                               +
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMM 346

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            K+VV+WNA+I  Y QNG + EA+ LF  +K   + P   T   +L+ACA++  L LG+ 
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 343 VDK------YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
                    +  Q G   DIF           CG ++D   VFE M   + VSWNAMI  
Sbjct: 407 AHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVG 466

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A NG    AL +F +M   G   +P+ VT IGVLSAC HAGLV+EGRR F  M +  GL
Sbjct: 467 YAQNGYGTNALEIFRKMLVSG--QKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGL 524

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  +H++CMVDL  RAG L EA D ++ MP + D +V G+LL AC+   N ++ + V +
Sbjct: 525 APMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAE 584

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            L+EI+  NSG YV+ S ++A L  W D  ++R  MR++GV K PGCSWI I
Sbjct: 585 KLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEI 636



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 195/417 (46%), Gaps = 81/417 (19%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER----------------- 183
           +H+ + K     +  + + L+  Y +CG  + ARKVFD + +R                 
Sbjct: 41  IHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGK 100

Query: 184 --------------DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
                         D  SWN+M+SG+++    +EA+  F  M  E+F+ +E +  S L +
Sbjct: 101 LDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSA 160

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L DL +G  +   + K++  L+ YMGSAL+DMY KCG +  A+R FD M  +++V+W
Sbjct: 161 CAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSW 220

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           N++IT Y QNG + +A+ +F  M   GV PD+ITL  V+SACAS  A+  G  +     +
Sbjct: 221 NSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVK 280

Query: 350 RG-LRHDIF-----------CGSIDDALKVFEDMPV------------------------ 373
           R   R+D+            C  +++A  VF+ MP+                        
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARL 340

Query: 374 -------TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
                   N VSWNA+I+    NG   EA+ LF  + +E  +  P   TF  +L+AC + 
Sbjct: 341 MFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRE--SIWPTHYTFGNLLNACANL 398

Query: 427 GLVDEGRRLF-DLMSSSFGLIPKSEH----YSCMVDLYARAGHLSEAWDFVERMPEK 478
             +  GR+    ++   F      E      + ++D+Y + G + +     ERM E+
Sbjct: 399 ADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVER 455



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 58/307 (18%)

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D      +L SC      +  + +   ++K +     ++ + L+D YGKCG    AR+VF
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 279 DAMVNK-------------------------------DVVTWNAMITAYAQNGLSNEAIM 307
           D M  +                               D  +WNAM++ +AQ+    EA+ 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
            F  M       ++ +    LSACA +  L++G  +    S+     D++          
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A + F+ M V N VSWN++I+    NG A +AL +F  M   G    P+++T 
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNG--VEPDEITL 255

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-------SCMVDLYARAGHLSEAW 469
             V+SAC     + EG ++          + K + Y       + +VD+YA+   ++EA 
Sbjct: 256 ASVVSACASWSAIREGLQI-------HARVVKRDKYRNDLVLGNALVDMYAKCRRVNEAR 308

Query: 470 DFVERMP 476
              +RMP
Sbjct: 309 LVFDRMP 315


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 295/510 (57%), Gaps = 17/510 (3%)

Query: 61  RIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
           ++ DL D   A  +F +I +P+  ++N +I G     + +  +L+L  QMKR G+ P+ F
Sbjct: 305 KVGDLAD---AISVFEKIKQPDIVSWNAVIAGCVLH-EHHEQALELLGQMKRSGICPNIF 360

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T      +CA +     G  +HSS+ K+ ++ D  VS  L+ MY++C  L+ AR  F+ +
Sbjct: 361 TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 420

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            E+DL++WN++ISGYS+     EA+ LF  M +E    ++ TL ++L S   L  + + +
Sbjct: 421 PEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCR 480

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V G  VK+    + Y+ ++LID YGKC  +  A R+F+     D+V++ +MITAYAQ G
Sbjct: 481 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 540

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
              EA+ LF  M+   + PD+     +L+ACA++ A + GK +  +  + G   DIF   
Sbjct: 541 QGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN 600

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CGSIDDA + F ++     VSW+AMI  LA +G   +AL LF +M KEG   
Sbjct: 601 SLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG--V 658

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            PN +T + VL AC HAGLV E +  F+ M   FG  P  EHY+CM+DL  RAG ++EA 
Sbjct: 659 SPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAV 718

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
           + V +MP + +  V GALLGA +  K+ ++ +R  ++L  +E   SG +V+ + I+A+  
Sbjct: 719 ELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAG 778

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            W++ A++R LMR+  V K PG SWI + D
Sbjct: 779 KWENVAEVRRLMRDSKVKKEPGMSWIEVKD 808



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 158/572 (27%), Positives = 272/572 (47%), Gaps = 61/572 (10%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LL +C +TK+++   QIH  +  + +     +   +I+L    ++F YA  L  + S P+
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPD 121

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             +++ +I G          +L  +++M  LG+K + FT+  V  +C+ +  L  G  VH
Sbjct: 122 LVSWSALISGYAQNGLG-GGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V   G + D  V+++L+ MYA+C +   ++++FDEI ER++VSWN++ S Y ++ +  
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCG 240

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EAV LF  M      P+E +L S++ +C  L D   GK + G+++K   D + +  +AL+
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALV 300

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY K G L  A  VF+ +   D+V+WNA+I     +    +A+ L  +MK +G+ P+  
Sbjct: 301 DMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIF 360

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL   L ACA +G  +LG+ +     +  +  D+F           C  ++DA   F  +
Sbjct: 361 TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 420

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI-------GVLSAC- 423
           P  + ++WNA+IS  +      EAL LF  M KEG       ++ I        V+  C 
Sbjct: 421 PEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCR 480

Query: 424 -VHAGLVDEGRR----LFDLMSSSFGLIPKSE---------------HYSCMVDLYARAG 463
            VH   V  G      + + +  S+G     E                ++ M+  YA+ G
Sbjct: 481 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 540

Query: 464 HLSEAWDF---VERMPEKVDEIVLGALLGAC------QKQKNTDVSQRVMQLLLEIESSN 514
              EA      ++ M  K D  V  +LL AC      ++ K   V       +L+I + N
Sbjct: 541 QGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN 600

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           S        ++A     DD+ +  + + E+G+
Sbjct: 601 S-----LVNMYAKCGSIDDAGRAFSELTERGI 627



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 18/375 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P + +Y  +   C    +L  G+ +H+ + K GL +D  + + LI +Y++C     ARK+
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
            DE  E DLVSW+++ISGY++ G    A+  F  M       +E T  SVL +C  + DL
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
            +GK V G VV +  + + ++ + L+ MY KC   + ++R+FD +  ++VV+WNA+ + Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            Q     EA+ LF  M  +G+ P++ +L  +++AC  +     GK +  Y  + G   D 
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           F            G + DA+ VFE +   + VSWNA+I+    +    +AL L  +M + 
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRS 353

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAG 463
           G    PN  T    L AC   GL + GR+L    SS   +  +S+ +    +VD+Y++  
Sbjct: 354 GIC--PNIFTLSSALKACAGMGLKELGRQLH---SSLMKMDMESDLFVSVGLVDMYSKCD 408

Query: 464 HLSEAWDFVERMPEK 478
            L +A      +PEK
Sbjct: 409 LLEDARMAFNLLPEK 423



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 24/312 (7%)

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           F P  ++   +L  C     L  G  +   + K+ +  +  + + LI++Y KC     AR
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYAR 111

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           ++ D     D+V+W+A+I+ YAQNGL   A+M F+ M   GV  ++ T   VL AC+ + 
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
            L +GK V       G   D+F           C    D+ ++F+++P  N VSWNA+ S
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR-RLFD--LMSS 441
                    EA+ LF  M   G   +PN+ +   +++AC   GL D  R ++    L+  
Sbjct: 232 CYVQIDFCGEAVGLFYEMVLSG--IKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKL 287

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
            +   P S   + +VD+YA+ G L++A    E++ +  D +   A++  C   ++    +
Sbjct: 288 GYDWDPFSA--NALVDMYAKVGDLADAISVFEKIKQP-DIVSWNAVIAGCVLHEH---HE 341

Query: 502 RVMQLLLEIESS 513
           + ++LL +++ S
Sbjct: 342 QALELLGQMKRS 353


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/503 (34%), Positives = 294/503 (58%), Gaps = 15/503 (2%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F  A  LF+++   +   +N +I     +   +  +L+ +  M+R G +P++ T      
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQS-GNFKDALEYFGLMRRFGFEPNSVTITTAIS 215

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SCA LL LN G+ +H  +   G   D  +S +L+ MY +CG L+ A ++F+++ ++ +V+
Sbjct: 216 SCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVA 275

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNSMISGY   G     ++LF RM  E   P   TL S++  C     L+ GK+V G+ +
Sbjct: 276 WNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTI 335

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +N++  + ++ S+L+D+Y KCG +  A ++F  +    VV+WN MI+ Y   G   EA+ 
Sbjct: 336 RNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALG 395

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF- 357
           LF+ M+ + V  D IT   VL+AC+ + AL+ GK +     ++ L +         D++ 
Sbjct: 396 LFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYA 455

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG++D+A  VF+ +P  + VSW +MI+A   +G A+ AL LF  M +     +P+ V F
Sbjct: 456 KCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSN--VKPDRVAF 513

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC HAGLVDEG   F+ M + +G+IP+ EHYSC++DL  RAG L EA++ +++ P
Sbjct: 514 LAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNP 573

Query: 477 EKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           E  D++ +L  L  AC+  +N D+   + + L++ +  +S  Y++ S ++A+   WD+  
Sbjct: 574 EIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVR 633

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            +R+ M+E G+ K PGCSWI I+
Sbjct: 634 VVRSKMKELGLKKNPGCSWIEIN 656



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 250/473 (52%), Gaps = 24/473 (5%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQI 78
           KLL LL+ C ++K+++Q   IH +++   +Q   FL   +I+       +++A  +F  +
Sbjct: 5   KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNM 64

Query: 79  SRPNEYAF-NVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALN 136
             P E +  N ++ G T  +  Y  +L+L+ ++     LKPD++TYP VF +C  L    
Sbjct: 65  ENPCEISLWNGLMAGYTKNYM-YVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYV 123

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H+ + K GL  D  V  SL+ MY +C   + A  +F+E+ E+D+  WN++IS Y 
Sbjct: 124 LGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  K+A+E FG MR   F P+ +T+ + + SC  L DL  G  +   ++ +   L+ +
Sbjct: 184 QSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + SAL+DMYGKCG L  A  +F+ M  K VV WN+MI+ Y   G     I LF RM   G
Sbjct: 244 ISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEG 303

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V P   TL  ++  C+    L  GK+V  Y  +  ++ D+F           CG ++ A 
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAE 363

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K+F+ +P +  VSWN MIS     G+  EAL LF  M K       + +TF  VL+AC  
Sbjct: 364 KIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRK--SYVESDAITFTSVLTACSQ 421

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              +++G+ + +L+     L         ++D+YA+ G + EA+   + +P++
Sbjct: 422 LAALEKGKEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKR 473



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 36/182 (19%)

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D   L+ +L AC +  +L  GK + +     GL++DIF           C   D A  VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 369 EDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC---- 423
           ++M    E+S WN +++    N    EAL LFE++       +P+  T+  V  AC    
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHY-PYLKPDSYTYPSVFKACGGLH 120

Query: 424 -------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
                  +H  L+  G  +  ++ SS            +V +Y +     +A      MP
Sbjct: 121 RYVLGKMIHTCLIKTGLMMDIVVGSS------------LVGMYGKCNAFEKAIWLFNEMP 168

Query: 477 EK 478
           EK
Sbjct: 169 EK 170


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 196/554 (35%), Positives = 300/554 (54%), Gaps = 21/554 (3%)

Query: 24  REKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           R   L LL  C ++      + IH  +L + I+    L   ++++         A  +F 
Sbjct: 431 RVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE 490

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
                +  ++N MI G       Y  + KL+ +M+   L+PDN T+  V   C N  AL 
Sbjct: 491 GTQARDVISWNSMIAG-HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALE 549

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  + + GL  D ++ ++LI MY RCG L  AR VF  ++ RD++SW +MI G +
Sbjct: 550 LGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
             G   +A+ELF +M+ E F P + T  S+L  C     L  GK V  +++ +  +L+  
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTG 669

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+ALI  Y K G++  AR VFD M ++D+V+WN +I  YAQNGL   A+    +M+   
Sbjct: 670 VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD 729

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V P+K + + +L+AC+S  AL+ GK V     +R L+ D+            CGS  +A 
Sbjct: 730 VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQ 789

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           +VF+++   N V+WNAMI+A A +G A +AL  F  M KEG   +P+  TF  +LSAC H
Sbjct: 790 EVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEG--IKPDGSTFTSILSACNH 847

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AGLV EG ++F  M S +G++P  EHY C+V L  RA    EA   + +MP   D  V  
Sbjct: 848 AGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWE 907

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
            LLGAC+   N  +++      L++ + N   Y++ S ++A    WDD AK+R +M  +G
Sbjct: 908 TLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRG 967

Query: 546 VSKTPGCSWIGIDD 559
           + K PG SWI +D+
Sbjct: 968 IRKEPGRSWIEVDN 981



 Score =  247 bits (631), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 249/476 (52%), Gaps = 22/476 (4%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQ---IHTQMLINF----IQKPNFLLIRIIDLKDFNYASL 73
           +L R   LS+L  C ++K ++    IH+ +  +     +Q  N L+       D   A  
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ + + +  ++N +I G      +   +++LY QM+  G+KP   T+  +  +CAN  
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDR-GEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           A   G  +H  + + G+  + H++++L+ MY RCG L  A+ VF+  + RD++SWNSMI+
Sbjct: 446 AYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIA 505

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G+++ G  + A +LF  M+ EE  PD IT  SVL  C +   L LGK + G + ++ + L
Sbjct: 506 GHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  +G+ALI+MY +CG+L  AR VF ++ ++DV++W AMI   A  G   +AI LF +M+
Sbjct: 566 DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSID 362
             G  P K T   +L  C S   LD GK V  Y    G   D              GS+ 
Sbjct: 626 NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMT 685

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA +VF+ MP  + VSWN +I+  A NG    A+    +M ++     PN  +F+ +L+A
Sbjct: 686 DAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQD--VVPNKFSFVSLLNA 743

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           C     ++EG+R+   +     L       + ++ +YA+ G   EA +  + + EK
Sbjct: 744 CSSFSALEEGKRVHAEIVKR-KLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEK 798



 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 225/405 (55%), Gaps = 17/405 (4%)

Query: 88  VMIRGLTTAWQKYSHSLKL---YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           V+   L  A  ++ H+++    YY+M+  G+  +  TY  +  +C+   AL  G  +HS 
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH 355

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + + G   D  + ++LI+MYARCG L  AR++F  + +RDL+SWN++I+GY++     EA
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + L+ +M+ E   P  +T + +L +C +      GK +   ++++ +  N ++ +AL++M
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y +CG+L+ A+ VF+    +DV++WN+MI  +AQ+G    A  LF  M+   + PD IT 
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPV 373
             VLS C +  AL+LGK +    ++ GL+ D           I CGS+ DA  VF  +  
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + +SW AMI   A  G   +A+ LF +M  EG   RP   TF  +L  C  +  +DEG+
Sbjct: 596 RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG--FRPVKSTFSSILKVCTSSACLDEGK 653

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           ++   + +S G    +   + ++  Y+++G +++A +  ++MP +
Sbjct: 654 KVIAYILNS-GYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR 697



 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 250/470 (53%), Gaps = 26/470 (5%)

Query: 24  REKLLSLLKKCPSTK---TVQQIHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFH 76
           R   ++LL+ C   +     ++IH QM+  ++       N L+   +  +    A  +F 
Sbjct: 27  RATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFK 86

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           ++ R +  ++N +I     A Q +   + +L+ +M+  G  P+  TY  +  +C +   L
Sbjct: 87  EMPRRDVISWNSLIS--CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
            +G  +HS + K G   D  V +SL++MY +CG L  AR+VF  I  RD+VS+N+M+  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           ++  Y KE + LFG+M  E   PD++T +++L +      L  GK +    V+  ++ + 
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            +G+AL+ M  +CG +  A++ F    ++DVV +NA+I A AQ+G + EA   + RM+  
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDA 364
           GV  ++ T + +L+AC++  AL+ GK +  + S+ G   D+            CG +  A
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F  MP  + +SWNA+I+  A      EA+ L+++M  EG   +P  VTF+ +LSAC 
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG--VKPGRVTFLHLLSACA 442

Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           ++    +G+ +  D++ S  G+       + ++++Y R G L EA +  E
Sbjct: 443 NSSAYADGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 187/334 (55%), Gaps = 16/334 (4%)

Query: 14  FTELNDPSLLREKLL--SLLKKCPSTKTVQ---QIHT-------QMLINFIQKPNFLLIR 61
           F E+ +  L  + +   S+L  C + + ++   QIH        Q+ +N       + IR
Sbjct: 520 FQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
              L+D   A  +FH +   +  ++  MI G     +    +++L++QM+  G +P   T
Sbjct: 580 CGSLQD---ARNVFHSLQHRDVMSWTAMIGGCADQGEDMK-AIELFWQMQNEGFRPVKST 635

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +  +   C +   L+ G  V + +   G + D  V ++LI+ Y++ G +  AR+VFD++ 
Sbjct: 636 FSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMP 695

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            RD+VSWN +I+GY++ G  + AVE   +M+E++ +P++ + VS+L +C     L  GK 
Sbjct: 696 SRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKR 755

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V   +VK K+  +  +G+ALI MY KCG+   A+ VFD ++ K+VVTWNAMI AYAQ+GL
Sbjct: 756 VHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +++A+  FN M+  G+ PD  T   +LSAC   G
Sbjct: 816 ASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  T V++L +C     L   K +   +V+  +  + ++ + LI+MY KC +++ A +VF
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             M  +DV++WN++I+ YAQ G   +A  LF  M+ AG  P+KIT I +L+AC S   L+
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            GK +     + G + D             CG +  A +VF  +   + VS+N M+   A
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
                 E L LF +MS EG    P+ VT+I +L A     ++DEG+R+  L     GL  
Sbjct: 206 QKAYVKECLGLFGQMSSEG--ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GLNS 262

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
                + +V +  R G +  A    +   ++ D +V  AL+ A
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAA 304


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 178/457 (38%), Positives = 271/457 (59%), Gaps = 13/457 (2%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           GL+ +   Y  V   C +  A+  G  VH+ + K   +   ++   LI +Y +C  L  A
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R+V DE+ ER++VSW +MISGYS+ GYA EA+ LF  M      P+E T  +VL SC   
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
               LG+ +   V+K   + + ++GS+L+DMY K G +  ARRVFD +  +DVV+  A+I
Sbjct: 125 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 184

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           + YAQ GL  EA+ LF R++  G+  + +T   VL+A + + ALD G+ V  +  +  L 
Sbjct: 185 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 244

Query: 354 H---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                     D++  CGS+  + ++F+ MP    +SWNAM+   + +G   EA+ LF+ M
Sbjct: 245 FYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLM 304

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYAR 461
            KE    +P+ VTF+ VLS C H G+ D G  +F ++++   G  P+ EHY C+VDL+ R
Sbjct: 305 -KEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGR 363

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG + EA++F+++MP +    + G+LLGAC+  +N  + + V + LLEIES N+GNYVI 
Sbjct: 364 AGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVIL 423

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S ++A+   WDD   +R LM+EK V K PG SWI +D
Sbjct: 424 SNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELD 460



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 227/463 (49%), Gaps = 44/463 (9%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           S+L +C S   +   Q++H  M+    + P +L  R+I L +       A  +  ++   
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI G +      S +L L+ +M   G  P+ FT+  V  SC +      G  +
Sbjct: 75  NVVSWTAMISGYSQRGYA-SEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS V K   +    V  SL+ MYA+ GK+  AR+VFD + ERD+VS  ++ISGY+++G  
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 193

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA++LF R++ E    + +T  SVL +   L  L  G+ V   V++ K+     + ++L
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 253

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG+L  +RR+FD+M  + V++WNAM+  Y+++GL  EA+ LF  MK    V PD
Sbjct: 254 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 313

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            +T + VLS C+  G  D           RGL  +IF   ++      +D        + 
Sbjct: 314 SVTFLAVLSGCSHGGMED-----------RGL--EIFYEMVNQ-----KDGFEPEIEHYG 355

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----VHAGLVDEGRRL 435
            ++      GR  EA    ++M  E     P    +  +L AC     VH G     RRL
Sbjct: 356 CVVDLFGRAGRVEEAFEFIKKMPFE-----PTAAIWGSLLGACRVHQNVHIGEF-VARRL 409

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            ++ S + G      +Y  + +LYA AG   +     E M EK
Sbjct: 410 LEIESENAG------NYVILSNLYASAGRWDDVRTVRELMKEK 446


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 185/515 (35%), Positives = 300/515 (58%), Gaps = 14/515 (2%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL      +  + A  LF  + + +   +N MI G       +  +  L+Y M+R G 
Sbjct: 281 NTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQN-GLFVEAFGLFYDMQRSGA 339

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +PD+ T   +  +  +L  L  G  VH  + +  ++ D  +  +L+ +Y +C  +  A+ 
Sbjct: 340 RPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQN 399

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           ++D  R  D+V  ++MISGY   G ++EA+++F  + E+   P+ +T+ SVL  C  +  
Sbjct: 400 LYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAA 459

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L LG+ + G+V++N  +   Y+ SAL+DMY KCG L  +  +F  M  KD VTWN+MI++
Sbjct: 460 LPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISS 519

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           ++QNG   EA+ LF +M   G+  + IT+   LSACAS+ A+  GK +     +  ++ D
Sbjct: 520 FSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKAD 579

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           IF           CG+++ AL+VFE MP  NEVSWN++ISA   +G   E++ L   M +
Sbjct: 580 IFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQE 639

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           EG   +P+ VTF+ ++SAC HAGLV+EG +LF  M+  + + P+ EH++CMVDLY+R+G 
Sbjct: 640 EG--YKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGK 697

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L +A  F+  MP K D  + GALL AC+  +N +++    Q L +++ +NSG YV+ S I
Sbjct: 698 LDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNI 757

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            A    WD  +K+R LM++  + K PG SW+ +++
Sbjct: 758 NAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNN 792



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 234/430 (54%), Gaps = 22/430 (5%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS-CANLL 133
           F  I   +   +NVM+ G   A      +++L+  M+  G +P NF     F+S CA   
Sbjct: 199 FDGIPERDCVLWNVMMDGCIKA-GDVDGAVRLFRNMRASGCEP-NFATLACFLSVCATDA 256

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  +HS   K GL+ +  V+++L+ MYA+C  LD A ++F+ + + DLV+WN MIS
Sbjct: 257 DLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMIS 316

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G  + G   EA  LF  M+     PD ITLVS+L +  DL  L  GK V G++V+N +++
Sbjct: 317 GCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNM 376

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++ SAL+D+Y KC  +  A+ ++DA    DVV  + MI+ Y  NG+S EA+ +F  + 
Sbjct: 377 DVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLL 436

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
              + P+ +T+  VL  CAS+ AL LG+ +  Y  +       +           CG +D
Sbjct: 437 EQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLD 496

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            +  +F  M   +EV+WN+MIS+ + NG+  EAL LF +M  EG   + N++T    LSA
Sbjct: 497 LSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEG--IKYNNITISAALSA 554

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVD 480
           C     +  G+ +  +     G I K++ +  S ++D+YA+ G+L  A    E MP+K +
Sbjct: 555 CASLPAIYYGKEIHGVTIK--GPI-KADIFAESALIDMYAKCGNLELALRVFEFMPDK-N 610

Query: 481 EIVLGALLGA 490
           E+   +++ A
Sbjct: 611 EVSWNSIISA 620



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 161/531 (30%), Positives = 245/531 (46%), Gaps = 38/531 (7%)

Query: 25  EKLLSLLKKCPSTKTVQ---QIHTQMLI-------NFIQKPNFLLIRIIDLKDFNYASLL 74
           ++LL++L+ C S   +    QIH + ++       N +     LL   +  + F  A  +
Sbjct: 33  DRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 75  FHQISRP---NEYAFNVMIRGLTTAWQKYSHSLKLYYQMK----RLGLKPDNFTYPFVFI 127
           F  + R    +   +N +IRG T A Q   H L + + +K         PD  T P+V  
Sbjct: 93  FSALPRAAAASSLPWNWLIRGFTAAGQ---HHLAVLFYVKMWSHPAAPSPDAHTLPYVVK 149

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SCA L A++ G  VH +   IGL  D +V  +L+ MYA  G L +AR  FD I ERD V 
Sbjct: 150 SCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVL 209

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN M+ G  K G    AV LF  MR     P+  TL   L  C    DL+ G  +    V
Sbjct: 210 WNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAV 269

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K  ++    + + L+ MY KC  L  A R+F+ M   D+VTWN MI+   QNGL  EA  
Sbjct: 270 KCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFG 329

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF  M+ +G  PD ITL+ +L A   +  L  GK V  Y  +  +  D+F          
Sbjct: 330 LFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYF 389

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            C  +  A  +++     + V  + MIS    NG + EAL +F  + ++    +PN VT 
Sbjct: 390 KCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQ--CIKPNAVTI 447

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
             VL  C     +  G+++   +  +     K    S ++D+YA+ G L  +     +M 
Sbjct: 448 ASVLPGCASMAALPLGQQIHGYVLRN-AYERKCYVESALMDMYAKCGRLDLSHYIFLKMS 506

Query: 477 EKVDEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           +K DE+   +++ +  Q  K  +      Q+ +E    N  N  IS+ + A
Sbjct: 507 QK-DEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYN--NITISAALSA 554


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 289/524 (55%), Gaps = 54/524 (10%)

Query: 39  TVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIR 91
           +++ IH QM+   +   N+ L ++I+            YA  +F  I  PN   +N M R
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD 151
           G   +    S +L LY  M  LGL P+ +T+PF+  SCA   A   G  +H  V K+G D
Sbjct: 62  GHALSSDPVS-ALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFD-------------------------------EI 180
            D +V  SLI+MY + G+L+ ARKVFD                               EI
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEI 180

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
             +D+VSWN+MISGY++ G  KEA+ELF  M +    PDE T+V+V+ +C   G + LG+
Sbjct: 181 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 240

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V  ++  +    N  + +ALID+Y KCG +  A  +F+ +  KDV++WN +I  Y    
Sbjct: 241 QVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--GLRH---- 354
           L  EA++LF  M  +G +P+ +T++ +L ACA +GA+D+G+W+  Y ++R  G+ +    
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSL 360

Query: 355 -----DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                D++  CG I+ A +VF+ M   +  SWNAMI   A +G+A+ A  LF +M K G 
Sbjct: 361 LTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG- 419

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              P+D+TF+G+LSAC H+G++D GR +F  MS  + + PK EHY CM+DL    G   E
Sbjct: 420 -IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKE 478

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           A + +  MP + D ++  +LL AC+   N ++ +   Q L++IE
Sbjct: 479 AKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIE 522


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 185/529 (34%), Positives = 290/529 (54%), Gaps = 46/529 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANL 132
           +F QI  P+ +  N ++R L+ +      ++ LY+ ++ +     D F++P +  + + +
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRS-SFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKV 134

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            A NHG+ +H    K+G  +D  +   LI MYA C ++  AR +FD++   D V+WN +I
Sbjct: 135 SAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMII 194

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
            GY + G+  +A+ LF  MR  +  PD + L +VL +CG  G+L  G+ +  FV  N   
Sbjct: 195 DGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254

Query: 253 LNFYMGSALIDMYGKCGALVPARRV-------------------------------FDAM 281
           ++ ++ +ALI+MY  CGA+  AR++                               FD M
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM 314

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
           + +D+V W+AMI+ YA++    EA+ LF+ M      PD+IT++ V+SAC+ +GAL    
Sbjct: 315 IERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQAN 374

Query: 342 WVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W+  Y  + G            D++  CG++  A +VFE+MP  N +SW++MI+A A +G
Sbjct: 375 WIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHG 434

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            A  A+ LF RM +      PN VTFIGVL AC HAGLV+EG +LF  M +  G+ P  E
Sbjct: 435 NADSAIKLFRRMKEVN--IEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTRE 492

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY CMVDLY RA  L +A + +E MP   + I+ G+L+ ACQ     ++ +   + LLE+
Sbjct: 493 HYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLEL 552

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           E  + G  V+ S I+A  K W+D   +R  M  KG+SK    S I I++
Sbjct: 553 EPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINN 601


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 179/462 (38%), Positives = 273/462 (59%), Gaps = 13/462 (2%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           +M   GL+ +   Y  V   C +  A+  G  VH+ + K   +   ++   LI +Y +C 
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            L  AR+V DE+ ER++VSW +MISGYS+ GYA EA+ LF  M      P+E T  +VL 
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           SC       LG+ +   V+K   + + ++GS+L+DMY K G +  ARRVFD +  +DVV+
Sbjct: 587 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
             A+I+ YAQ GL  EA+ LF R++  G+  + +T   VL+A + + ALD G+ V  +  
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706

Query: 349 QRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +  L           D++  CGS+  + ++F+ MP    +SWNAM+   + +G   EA+ 
Sbjct: 707 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVE 766

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMV 456
           LF+ M KE    +P+ VTF+ VLS C H G+ D G  +F ++++   G  P+ EHY C+V
Sbjct: 767 LFKLM-KEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 825

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL+ RAG + EA++F+++MP +    + G+LLGAC+  +N  + + V + LLEIES N+G
Sbjct: 826 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 885

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           NYVI S ++A+   WDD   +R LM+EK V K PG SWI +D
Sbjct: 886 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELD 927



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 227/463 (49%), Gaps = 44/463 (9%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           S+L +C S   +   Q++H  M+    + P +L  R+I L +       A  +  ++   
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI G +      S +L L+ +M   G  P+ FT+  V  SC +      G  +
Sbjct: 542 NVVSWTAMISGYSQRGYA-SEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS V K   +    V  SL+ MYA+ GK+  AR+VFD + ERD+VS  ++ISGY+++G  
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 660

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA++LF R++ E    + +T  SVL +   L  L  G+ V   V++ K+     + ++L
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 720

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG+L  +RR+FD+M  + V++WNAM+  Y+++GL  EA+ LF  MK    V PD
Sbjct: 721 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 780

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            +T + VLS C+  G  D           RGL  +IF   ++       ++       + 
Sbjct: 781 SVTFLAVLSGCSHGGMED-----------RGL--EIFYEMVNQKDGFEPEIE-----HYG 822

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----VHAGLVDEGRRL 435
            ++      GR  EA    ++M  E     P    +  +L AC     VH G     RRL
Sbjct: 823 CVVDLFGRAGRVEEAFEFIKKMPFE-----PTAAIWGSLLGACRVHQNVHIGEF-VARRL 876

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            ++ S + G      +Y  + +LYA AG   +     E M EK
Sbjct: 877 LEIESENAG------NYVILSNLYASAGRWDDVRTVRELMKEK 913


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 299/542 (55%), Gaps = 29/542 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQ 77
           + +LS L+ C S   + Q+H  M+ + + +    L R+ID         + +YA  +F  
Sbjct: 6   KPILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 65

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  P+ Y +N MIRG + +      +L  Y +M R G  PD FT+P+V  +C+ L  +  
Sbjct: 66  IDCPSVYIWNSMIRGYSNSPNP-DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 124

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH  V K G + + +VS  L+ MY  CG+++   +VF++I + ++V+W S+ISG+  
Sbjct: 125 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVN 184

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
                +A+E F  M+     P+E  +V +L +CG   D            ++K + N  +
Sbjct: 185 NNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPY---------CQSKFEFNVIL 235

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++LIDMY KCG +  AR +FD M  +++V+WN++IT Y+QNG + EA+ +F+ M   G+
Sbjct: 236 ATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGI 295

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--IFC---------GSIDDALK 366
            PDK+T   V+ A    G   LG+ +  Y S+ G   D  I C         G+ + A K
Sbjct: 296 APDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKK 355

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +FED+   + ++W  +I  LA +G  ++AL +F+RM +EG A  P+ +T++GVL AC H 
Sbjct: 356 MFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNAT-PDGITYLGVLYACSHI 414

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV+EG+R F  M   +GL P  EHY CMVD+ +RAG   EA   V+ MP +    + GA
Sbjct: 415 GLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGA 474

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL  C+  +N D++ R+  ++ E E   SG YV+ S I+A    W D   +R  M+ K V
Sbjct: 475 LLNGCEIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRV 534

Query: 547 SK 548
            K
Sbjct: 535 DK 536


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 291/501 (58%), Gaps = 24/501 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANL 132
           +F  +  P+   +N ++ GL       S +L+ + +M   G ++PD+ T      + A  
Sbjct: 171 VFDTVPSPDTILWNTLLAGLPG-----SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEA 225

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
             +  G  VH    K GL E +HV   L+++Y++CG +DSA+ +FD +   DLV++N++I
Sbjct: 226 SHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALI 285

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           SGYS  G  + +VELF  +    + P+  TLV+V+      G  +L + +  FVVK ++D
Sbjct: 286 SGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLD 345

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + +AL  +Y +   +  AR +FDAM+ K + +WNAMI+ YAQNGL+  A+ LF  M
Sbjct: 346 ADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLM 405

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +   V P+ IT+   LSACA +GAL LGKWV +  S+  L  +++           CGSI
Sbjct: 406 QELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSI 465

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR--PNDVTFIGV 419
            +A  +F+ M   N VSWNAMIS    +G+  EAL L++ M      AR  P   TF+ V
Sbjct: 466 AEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLD----ARILPTSSTFLSV 521

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK- 478
           + AC H GLVDEG+++F +M++ + + P  EH +CMVDL  RAG L+EA + +   P+  
Sbjct: 522 IYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSA 581

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
           +   V GALLGAC   KN+D+++   Q L E++S N+G YV+ S ++ + K + ++A +R
Sbjct: 582 IGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVR 641

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
              + + + KTPGC+ I I D
Sbjct: 642 QEAKTRKLVKTPGCTLIEIGD 662



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 194/359 (54%), Gaps = 19/359 (5%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D + A  LF ++  P+  A+N +I G +      S S++L+ ++   G +P++ T   V 
Sbjct: 262 DMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVES-SVELFKELTASGWRPNSSTLVAVI 320

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
              +          +H+ V K  LD D  VS +L T+Y R   ++SAR +FD + E+ + 
Sbjct: 321 PVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTME 380

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MISGY++ G  + AV LF  M+E    P+ IT+ S L +C  LG L LGKWV   +
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRII 440

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            K K++LN Y+ +ALIDMY KCG++  AR +FD M NK+VV+WNAMI+ Y  +G   EA+
Sbjct: 441 SKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEAL 500

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DI 356
            L+  M  A + P   T + V+ AC+  G +D G+ V     ++Y    G+ H     D+
Sbjct: 501 KLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDL 560

Query: 357 F--CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALL----LFERMSKEGG 407
               G +++AL++  + P        W A++ A   +  +  A L    LFE  S+  G
Sbjct: 561 LGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAG 619



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 204/427 (47%), Gaps = 46/427 (10%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF     P+ +  N ++R L         SL+ +     L   PD+F++ F   S ++  
Sbjct: 76  LFRAFPCPDRFLRNALLRSLP--------SLRPHL----LFPSPDSFSFAFAATSLSSSC 123

Query: 134 ALN----------HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           +            HG+SV +     G   D  V+ +L  +Y +  + D ARKVFD +   
Sbjct: 124 SSRGNDAAAARTLHGLSVAA-----GYAADTFVASALAKLYFKLSRGDDARKVFDTVPSP 178

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           D + WN++++G        EA+E F RM +     PD  TL S L +  +   + +G+ V
Sbjct: 179 DTILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCV 234

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G+ VK  +  + ++ + L+ +Y KCG +  A+ +FD M N D+V +NA+I+ Y+ NG+ 
Sbjct: 235 HGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMV 294

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------- 355
             ++ LF  +  +G  P+  TL+ V+   +  G   L + +  +  +  L  D       
Sbjct: 295 ESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTAL 354

Query: 356 --IFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
             ++C    ++ A  +F+ M      SWNAMIS  A NG    A+ LF+ M +     +P
Sbjct: 355 TTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELN--VQP 412

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           N +T    LSAC H G +  G+ +  ++S    L       + ++D+YA+ G ++EA   
Sbjct: 413 NPITISSTLSACAHLGALSLGKWVHRIISKE-KLELNVYVMTALIDMYAKCGSIAEARSI 471

Query: 472 VERMPEK 478
            +RM  K
Sbjct: 472 FDRMDNK 478


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 302/551 (54%), Gaps = 25/551 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +   +Q H+  +   +     L   ++DL     D   A   F      
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE 436

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +NVM+          + S K++ QM+  G++P+ FTYP +  +C++L A++ G  +
Sbjct: 437 NVVLWNVMLVAYGL-LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQI 495

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V K G   + +VS  LI MYA+ GKLD A K+F  ++E+D+VSW +MI+GY++    
Sbjct: 496 HTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKF 555

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA+ LF  M+++    D I   S + +C  +  L  G+ +      +    +  +G+AL
Sbjct: 556 AEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNAL 615

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + +Y +CG +  A   FD + +KD ++WN++I+ +AQ+G   EA+ LF++M  AG   + 
Sbjct: 616 VSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINS 675

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-------------IFCGSIDDALKVF 368
            T    +SA A++  + LGK +     + G  HD               CG+IDDA + F
Sbjct: 676 FTFGPAVSAAANVANVKLGKQIHAMIIKTG--HDSETEVSNVLITLYAKCGNIDDAERQF 733

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            +MP  NE+SWNAM++  + +G   +AL LFE M + G    PN VTF+GVLSAC H GL
Sbjct: 734 FEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLG--VLPNHVTFVGVLSACSHVGL 791

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VDEG + F  M    GL+PK EHY+C+VDL  R+G LS A  FVE MP + D +V   LL
Sbjct: 792 VDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLL 851

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC   KN D+ +     LLE+E  +S  YV+ S ++A    W    + R +M+++GV K
Sbjct: 852 SACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKK 911

Query: 549 TPGCSWIGIDD 559
            PG SWI +++
Sbjct: 912 EPGRSWIEVNN 922



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 233/445 (52%), Gaps = 19/445 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           V++IH + + +  +   F+   +IDL       N A  +F  + + +  ++  M+ GL+ 
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQ 248

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           +  +   ++ L+ QM   G+ P  + +  V  +C  +     G  +H  V K G   + +
Sbjct: 249 SGCE-EEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETY 307

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++L+T+Y+R G    A +VF+ + +RD VS+NS+ISG S+ GY+ +A+ELF +M  + 
Sbjct: 308 VCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDC 367

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD +T+ S+L +C  +G L++GK    + +K  M  +  +  AL+D+Y KC  +  A 
Sbjct: 368 LKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAH 427

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
             F +   ++VV WN M+ AY      NE+  +F +M+  G+ P++ T   +L  C+S+ 
Sbjct: 428 EFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLR 487

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
           A+DLG+ +     + G + +++            G +D ALK+F  +   + VSW AMI+
Sbjct: 488 AVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIA 547

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
             A + +  EAL LF+ M  +G     +++ F   +SAC     +++G+++      S G
Sbjct: 548 GYAQHEKFAEALNLFKEMQDQG--IHSDNIGFASAISACAGIQALNQGQQIHAQACVS-G 604

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAW 469
                   + +V LYAR G + +A+
Sbjct: 605 YSDDLSVGNALVSLYARCGKVRDAY 629



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 196/397 (49%), Gaps = 19/397 (4%)

Query: 101 SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           ++ +   + M+  G++ ++ TY ++   C +    + G  +H  + K+G   +  +   L
Sbjct: 50  ANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERL 109

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           + +Y   G LD A  VFDE+  R L  WN ++  +     A   + LF RM +E+  PDE
Sbjct: 110 MDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDE 169

Query: 221 ITLVSVLGSCGDLGDLVLG--KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
            T   VL  CG  GD+     + +    + +  + + ++ + LID+Y K G L  A++VF
Sbjct: 170 RTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVF 228

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  +D V+W AM++  +Q+G   EA++LF +M  +GV P       VLSAC  +    
Sbjct: 229 DGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYK 288

Query: 339 LGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALA 387
           +G+ +     ++G   + +            G+   A +VF  M   +EVS+N++IS L+
Sbjct: 289 VGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLS 348

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
             G + +AL LF++M  +    +P+ VT   +LSAC   G +  G++ F   +   G+  
Sbjct: 349 QQGYSDKALELFKKMCLD--CLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSS 405

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
                  ++DLY +   +  A +F   +  + + +VL
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFF--LSTETENVVL 440



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 116/285 (40%), Gaps = 45/285 (15%)

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG-----------ALD 338
            A+  AY+ +      I   + M+  GV  +  T + +L  C S G            L 
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILK 96

Query: 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           +G   +    +R +   I  G +D A+ VF++MPV     WN ++        A   L L
Sbjct: 97  MGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL 156

Query: 399 FERMSKEGGAARPNDVTFIGVLSAC------------VHAGLVDEGRRLFDLMSSSFGLI 446
           F RM +E    +P++ T+ GVL  C            +HA  +  G       +S F   
Sbjct: 157 FRRMLQE--KVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYE-----NSLFVCN 209

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P       ++DLY + G L+ A    + + +K D +   A+L    +   +   +  + L
Sbjct: 210 P-------LIDLYFKNGFLNSAKKVFDGL-QKRDSVSWVAMLSGLSQ---SGCEEEAVLL 258

Query: 507 LLEIESSN--SGNYVISSKIFANLKM--WDDSAKMRALMREKGVS 547
             ++ +S      Y+ SS + A  K+  +    ++  L+ ++G S
Sbjct: 259 FCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS 303


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/555 (34%), Positives = 310/555 (55%), Gaps = 29/555 (5%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQ 77
           ++ EK ++LL+ C + + + QI  Q++ + ++  +F+    I      K  ++A  LF +
Sbjct: 10  IVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDK 69

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I +PN   +N M RG       +  ++ L+ ++ R+   P+ FT+P +  SC  L  +  
Sbjct: 70  IPQPNTATWNAMFRGYLQNGH-HRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVRE 128

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH    K G   +  V+ SLI MY++ G ++ A KVF E+ ER++V W ++I+GY  
Sbjct: 129 GEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYIL 188

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G       LF    E +     + + SVL S G +    +    E F   +KM     M
Sbjct: 189 CGDVVSGRRLFDLAPERD-----VVMWSVLIS-GYIESKNMAAARELF---DKMPNRDTM 239

Query: 258 G-SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             +A+++ Y   G +    +VFD M  ++V +WN +I  Y +NGL +E +  F RM   G
Sbjct: 240 SWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEG 299

Query: 317 -VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
            V P+  TL+ VLSAC+ +GALD+GKWV  YA   G + ++F           CG I++A
Sbjct: 300 HVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENA 359

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           + VF  +   + +SWN +I+ LA +G A +AL +F+RM  EG    P+ VTF+G+LSAC 
Sbjct: 360 VVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEG--EEPDGVTFVGILSACT 417

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H GLV +G   F  M   + ++P+ EHY CMVDL  RAG L +A +F+ +MP + D ++ 
Sbjct: 418 HMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIW 477

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            ALLGAC+  KN ++++  +Q L+E+E +N  N+V+ S I+ +L   +D A+++  MR+ 
Sbjct: 478 AALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDT 537

Query: 545 GVSKTPGCSWIGIDD 559
           G  K PGCS I  +D
Sbjct: 538 GFRKLPGCSVIECND 552


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 289/499 (57%), Gaps = 16/499 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF +++  +  ++N MI G           ++++ +M   G+  D  T   VF++CA
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLD-DRGIEIFIKMLVFGVDIDLATMVNVFVACA 363

Query: 131 NLLALNHGVSVHS-SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           N+  L  G  +HS S+    LD +   +++L+ MY++CG L+SA +VF+ + E+ +VSW 
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWT 423

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI+GY + G +  A++LF  M+    +PD   + S+L +C   G+L  GK V  ++ +N
Sbjct: 424 SMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN 483

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            ++ N ++ +AL DMY KCG++  A  VF  M  KDV++WN MI  Y +N L NEA+ LF
Sbjct: 484 NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLF 543

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+     PD  T+  +L ACAS+ ALD G+ +  YA + G   D +           C
Sbjct: 544 AEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKC 602

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G +  A  +F+ +P  + VSW  MI+    +G   EA+  F +M   G    P++V+FI 
Sbjct: 603 GLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTG--IEPDEVSFIS 660

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC H+GL+DEG ++F++M     + P  EHY+CMVDL AR G+L +A  F++ MP K
Sbjct: 661 ILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK 720

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D  + GALL  C+   +  ++++V + + E+E  N+G YV+ + I+A  + W++  K+R
Sbjct: 721 PDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLR 780

Query: 539 ALMREKGVSKTPGCSWIGI 557
             + ++G+ K PGCSWI I
Sbjct: 781 KKIGQRGLKKNPGCSWIEI 799



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 229/434 (52%), Gaps = 20/434 (4%)

Query: 57  FLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           F+ ++  DLK+     ++F ++S    + +N+MI   + +   Y  S+ L+ QM  LG+K
Sbjct: 193 FMYVKCGDLKE---GRMVFDKLSESKIFLWNLMISEYSGSGN-YGESINLFKQMLELGIK 248

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P+++T+  +    A +  +  G  VH  + K+G +  + V +SLI+ Y    K+  A+K+
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
           FDE+ +RD++SWNSMISGY K G     +E+F +M       D  T+V+V  +C ++G L
Sbjct: 309 FDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTL 368

Query: 237 VLGKWVEGFVVK-NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           +LGK +  + +K   +D      + L+DMY KCG L  A RVF+ M  K VV+W +MIT 
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITG 428

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y + GLS+ AI LF+ MK  GV PD   +  +L+ACA  G L  GK V  Y  +  L  +
Sbjct: 429 YVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETN 488

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
            F           CGS+ DA  VF  M   + +SWN MI     N   +EAL LF  M +
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR 548

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           E   ++P+  T   +L AC     +D+GR +      + G        + +VD+Y + G 
Sbjct: 549 E---SKPDGTTVACILPACASLAALDKGREIHGYALRN-GYSEDKYVTNAVVDMYVKCGL 604

Query: 465 LSEAWDFVERMPEK 478
           L  A    + +P K
Sbjct: 605 LVLARSLFDMIPNK 618



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 191/386 (49%), Gaps = 16/386 (4%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
            Y  +   CA   ++  G  V S +   G+  D  +   L+ MY +CG L   R VFD++
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            E  +  WN MIS YS  G   E++ LF +M E    P+  T  S+L     +  +  G+
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGR 271

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V G + K   +    + ++LI  Y     +  A+++FD + ++DV++WN+MI+ Y +NG
Sbjct: 272 QVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNG 331

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-----RGLRH- 354
           L +  I +F +M   GV+ D  T++ V  ACA+IG L LGK +  Y+ +     R +R  
Sbjct: 332 LDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFN 391

Query: 355 ----DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
               D++  CG ++ A++VFE M     VSW +MI+     G +  A+ LF+ M   G  
Sbjct: 392 NTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRG-- 449

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             P+      +L+AC   G +  G+ + D +  +  L   S   + + D+YA+ G + +A
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLETNSFVSNALTDMYAKCGSMKDA 508

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQ 494
            D    M +K D I    ++G   K 
Sbjct: 509 HDVFSHMKKK-DVISWNTMIGGYTKN 533



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 144/322 (44%), Gaps = 31/322 (9%)

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
           +LDS+RK+ +                + ++G  K A+EL    +   F  D     S+L 
Sbjct: 117 ELDSSRKIVE----------------FCEVGDLKNAMELLCSSQNSNF--DLGAYCSILQ 158

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
            C +   +  G+ V   +  + + ++  +G  L+ MY KCG L   R VFD +    +  
Sbjct: 159 LCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFL 218

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN MI+ Y+ +G   E+I LF +M   G+ P+  T   +L   A++  ++ G+ V     
Sbjct: 219 WNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLIC 278

Query: 349 QRG----------LRHDIFCG-SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + G          L    F G  +  A K+F+++   + +SWN+MIS    NG     + 
Sbjct: 279 KLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIE 338

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           +F +M   G     +  T + V  AC + G +  G+ L      +  L  +    + ++D
Sbjct: 339 IFIKMLVFG--VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLD 396

Query: 458 LYARAGHLSEAWDFVERMPEKV 479
           +Y++ G L+ A    ERM EK 
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKT 418


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/580 (31%), Positives = 313/580 (53%), Gaps = 47/580 (8%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           P+ L   LL+   K       +++   M    +   N LL  +   +  +    LF  ++
Sbjct: 40  PTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMT 99

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNH 137
           + +  ++N +I G +     ++ ++++Y  + +    ++P   T   + ++ + L     
Sbjct: 100 QRDIVSYNAVIAGFSGG-GSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRAL 158

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYA-------------------------------R 166
           G   H  + ++G   +  V   L+ MYA                               R
Sbjct: 159 GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
           C  ++ AR++F+ + +RD ++W +M++G+++ G   EA+E+F RMR +    D+ T  S+
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +CG L  L  GK +  ++++ + D N ++GSAL+DMY KC ++  A  VF  M  K++
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           ++W A+I  Y QNG S EA+ +F+ M+  G++PD  TL  V+S+CA++ +L+ G      
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCL 398

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
           A   GL H I            CGSI+DA ++F++M   ++VSW A++S  A  GRA E 
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           + LFE+M  +G   +P+ VTFIGVLSAC  AG V++GR  F  M    G++P  +HY+CM
Sbjct: 459 IDLFEKMLAKG--VKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCM 516

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           +DLY+R+G L EA +F+++MP   D I  G LL AC+ + + ++ +   + LLEI+  N 
Sbjct: 517 IDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNP 576

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            +YV+   + A    W++ A++R  MR++ V K PGCSWI
Sbjct: 577 ASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWI 616


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/534 (35%), Positives = 305/534 (57%), Gaps = 18/534 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           ++IH  ML   +    F    ++D+     +   A  +F  I+ P+  ++N +I G    
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
                 +L L  +MK  G +P+ FT      +CA +     G  +HSS+ K+    D   
Sbjct: 263 -DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFA 321

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           +  L+ MY++C  +D AR+ +D + ++D+++WN++ISGYS+ G   +AV LF +M  E+ 
Sbjct: 322 AVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI 381

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             ++ TL +VL S   L  + + K +    +K+ +  +FY+ ++L+D YGKC  +  A +
Sbjct: 382 DFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASK 441

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F+    +D+V + +MITAY+Q G   EA+ L+ +M+ A + PD      +L+ACA++ A
Sbjct: 442 IFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSA 501

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
            + GK +  +A + G   DIF           CGSI+DA + F ++P    VSW+AMI  
Sbjct: 502 YEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGG 561

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G   EAL LF +M ++G    PN +T + VL AC HAGLV+EG++ F+ M   FG+
Sbjct: 562 YAQHGHGKEALRLFNQMLRDG--VPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGI 619

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EHY+CM+DL  R+G L+EA + V  +P + D  V GALLGA +  KN ++ Q+  +
Sbjct: 620 KPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAK 679

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +L ++E   SG +V+ + I+A+  MW++ AK+R  M++  V K PG SWI I D
Sbjct: 680 MLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKD 733



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 225/448 (50%), Gaps = 19/448 (4%)

Query: 42  QIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
           ++H  ++   F + P   N L+      + F YA  L  + S  +  +++ ++ G     
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN- 60

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157
                +L ++ +M  LG+K + FT+P V  +C+    LN G  VH      G + D  V+
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           ++L+ MYA+CG LD +R++F  I ER++VSWN++ S Y +     EAV LF  M     +
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           P+E ++  +L +C  L +  LG+ + G ++K  +DL+ +  +AL+DMY K G +  A  V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F  + + DVV+WNA+I     +  ++ A+ML + MK +G  P+  TL   L ACA++G  
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           +LG+ +     +     D+F           C  +DDA + ++ MP  + ++WNA+IS  
Sbjct: 301 ELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGY 360

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           +  G   +A+ LF +M  E      N  T   VL +      +   +++  +   S G+ 
Sbjct: 361 SQCGDHLDAVSLFSKMFSED--IDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS-GIY 417

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVER 474
                 + ++D Y +  H+ EA    E 
Sbjct: 418 SDFYVINSLLDTYGKCNHIDEASKIFEE 445



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 197/363 (54%), Gaps = 19/363 (5%)

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           + +H+ + K G   D  + + L+T+Y++C +   ARK+ DE  E D+VSW+S++SGY + 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G+ +EA+ +F  M       +E T  SVL +C    DL +G+ V G  V    + + ++ 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + L+ MY KCG L  +RR+F  +V ++VV+WNA+ + Y Q+ L  EA+ LF  M  +G+ 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P++ ++  +L+ACA +   DLG+ +     + GL  D F            G I+ A+ V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+D+   + VSWNA+I+    +     AL+L + M  +G   RPN  T    L AC   G
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM--KGSGTRPNMFTLSSALKACAAMG 298

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
             + GR+L    SS   +   S+ ++   +VD+Y++   + +A    + MP+K D I   
Sbjct: 299 FKELGRQLH---SSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK-DIIAWN 354

Query: 486 ALL 488
           AL+
Sbjct: 355 ALI 357


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 294/551 (53%), Gaps = 31/551 (5%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQML---INFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           +  +LSLL +C S + ++++   +L   I+F     F         D N A L+F QI  
Sbjct: 4   QNTILSLLARCKSMRELKKLRGLILSKLIDFCVDSXF--------GDINNADLVFRQIDA 55

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ Y +N MIRG          S+ LY Q+   G  PD+FT+PFV  +C  +   + G  
Sbjct: 56  PSVYIWNSMIRGFVNN-HNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQDCGKC 114

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  + K G + D + +  L+ MY  C  + S  KVFD I   ++V+W  +I+GY     
Sbjct: 115 IHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQ 174

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL------- 253
             EA+++F  M      P+EIT+V+ L  C    D   G+WV   + K   D        
Sbjct: 175 PYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNS 234

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A+++MY KCG+   AR +F+ M  +++V+WN+MI AY Q     EA+ LF  M 
Sbjct: 235 NIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMW 294

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PDK T + VLS CA + AL LG+ V  Y  + G+  DI             G + 
Sbjct: 295 TSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGGLG 354

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A K+F  +   + V W +MI+ LA +G  +EAL +F+ M  E  +  P+ +T+IGVL A
Sbjct: 355 SAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTM-HEDSSLVPDHITYIGVLFA 413

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GLV+E ++ F LM+  + ++P  EHY CMVDL +R+GH  EA   +E M  + +  
Sbjct: 414 CSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMVDLLSRSGHFGEAERLMETMAIQPNIS 473

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL  CQ  +N  V+ +V + L E+ES  SG +V+ S I+A    W+D    R +M+
Sbjct: 474 IXGALLYGCQIHENLXVANQVKERLTELESCQSGAHVLLSNIYAKAGRWEDVNGTRKVMK 533

Query: 543 EKGVSKTPGCS 553
            K ++K  G S
Sbjct: 534 HKRITKIIGHS 544


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 312/560 (55%), Gaps = 32/560 (5%)

Query: 28  LSLLKKCPSTKT-----VQQIHTQM----LINFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           LS+L     T T     V+++H        I+ ++  N L+         + A L+F  +
Sbjct: 236 LSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM 295

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
              +  ++N MI GL  A     H +  ++ +M++ G  PD+ TY  +  +  +  A   
Sbjct: 296 CDRDVISWNAMIGGL--AQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEW 353

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
              VH    ++GL  D  V  + + MY RCG +D A+ +FD++  R++ +WN+MI G ++
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQ 413

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE---GFVVKNKMDLN 254
               +EA+ LF +MR E F PD  T V++L +  ++G+  L +WV+    + +   + ++
Sbjct: 414 QKCGREALSLFLQMRREGFFPDATTFVNILSA--NVGEEAL-EWVKEVHSYAIDAGL-VD 469

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             +G+AL+ MY KCG  + A++VFD MV ++V TW  MI+  AQ+G  +EA  LF +M  
Sbjct: 470 LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR 529

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            G+ PD  T + +LSACAS GAL+  K V  +A   GL  D+            CGS+DD
Sbjct: 530 EGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDD 589

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A +VF+DM   +  SW  MI  LA +GR  +AL LF +M  EG   +PN  +F+ VLSAC
Sbjct: 590 ARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEG--FKPNGYSFVAVLSAC 647

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            HAGLVDEGRR F  ++  +G+ P  EHY+CMVDL  RAG L EA  F+  MP +  +  
Sbjct: 648 SHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAP 707

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            GALLGAC    N ++++   +  L+++  ++  YV+ S I+A    W+    +R++M+ 
Sbjct: 708 WGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQR 767

Query: 544 KGVSKTPGCSWIGIDDPKQS 563
           +G+ K PG SWI +D+   S
Sbjct: 768 RGIRKEPGRSWIEVDNQIHS 787



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/406 (33%), Positives = 218/406 (53%), Gaps = 17/406 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++K+Y QM+R G +P+  TY  +  +C + ++L  G  +H+ + + G   D  V  +L+ 
Sbjct: 14  AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVN 73

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG +D A+ +FD++ ER+++SW  MI G +  G  +EA   F +M+ E F+P+  T
Sbjct: 74  MYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYT 133

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
            VS+L +    G L   K V    V   + L+  +G+AL+ MY K G++  AR VFD MV
Sbjct: 134 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMV 193

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA--SIGALDLG 340
            +D+ +W  MI   AQ+G   EA  LF +M+  G  P+  T + +L+A A  S GAL+  
Sbjct: 194 ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWV 253

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K V K+A + G   D+            CGSIDDA  VF+ M   + +SWNAMI  LA N
Sbjct: 254 KEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQN 313

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G  HEA  +F +M +EG    P+  T++ +L+  V  G  +  + +    +   GL+   
Sbjct: 314 GCGHEAFTIFLKMQQEGFV--PDSTTYLSLLNTHVSTGAWEWVKEVHK-HAVEVGLVSDL 370

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
              S  V +Y R G + +A    +++  + +     A++G   +QK
Sbjct: 371 RVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQK 415



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/420 (33%), Positives = 218/420 (51%), Gaps = 16/420 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A ++F  +   + +++ VMI GL     +   +  L+ QM+R G  P+  TY  +  + A
Sbjct: 185 ARVVFDGMVERDIFSWTVMIGGLAQH-GRGQEAFSLFLQMERGGCLPNLTTYLSILNASA 243

Query: 131 --NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
             +  AL     VH    K G   D  V ++LI MYA+CG +D AR VFD + +RD++SW
Sbjct: 244 ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISW 303

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MI G ++ G   EA  +F +M++E F+PD  T +S+L +    G     K V    V+
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +  +  +GSA + MY +CG++  A+ +FD +  ++V TWNAMI   AQ     EA+ L
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSL 423

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL----------RHDIFC 358
           F +M+  G  PD  T + +LSA     AL+  K V  YA   GL               C
Sbjct: 424 FLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKC 483

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G+   A +VF+DM   N  +W  MIS LA +G  HEA  LF +M +EG    P+  T++ 
Sbjct: 484 GNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG--IVPDATTYVS 541

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +LSAC   G ++  + +    + + GL+      + +V +YA+ G + +A    + M E+
Sbjct: 542 ILSACASTGALEWVKEVHS-HAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLER 600



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 165/313 (52%), Gaps = 17/313 (5%)

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY++ GYA++A++++ +MR E   P+EIT +S+L +C     L  GK +   ++++ 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              +  + +AL++MY KCG++  A+ +FD MV ++V++W  MI   A  G   EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------G 359
           +M+  G  P+  T + +L+A AS GAL+  K V  +A   GL  D+             G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SIDDA  VF+ M   +  SW  MI  LA +GR  EA  LF +M  E G   PN  T++ +
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM--ERGGCLPNLTTYLSI 238

Query: 420 L--SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           L  SA    G ++  + +    +   G I      + ++ +YA+ G + +A    + M +
Sbjct: 239 LNASAITSTGALEWVKEVHK-HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCD 297

Query: 478 KVDEIVLGALLGA 490
           + D I   A++G 
Sbjct: 298 R-DVISWNAMIGG 309


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 286/498 (57%), Gaps = 16/498 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYY-QMKRLGLKPDNFTYPFVFISCANL 132
           +FH++   N  ++  +I GL  A   Y+    +Y+ +M R  ++ D++T+     +CA+ 
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRA--GYNKEALVYFSEMWRSRVEYDSYTFAIALKACADS 230

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            ALN+G  +H+   K G D    V+++L TMY +CGKL+    +F+++  RD+VSW ++I
Sbjct: 231 GALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTII 290

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +   +MG  + AV+ F RMRE +  P+E T  +V+  C +L  +  G+ +   ++   + 
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLA 350

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + ++++ MY KCG L  +  +F  M  +D+V+W+ +I  Y+Q G  +EA  L + M
Sbjct: 351 ASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWM 410

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +  G  P +  L  VLSAC ++  L+ GK +  Y    GL H              CGSI
Sbjct: 411 RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSI 470

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           ++A ++F+     + VSW AMI+  A +G + E + LFE++ + G   RP+ VTFIGVLS
Sbjct: 471 EEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVG--LRPDSVTFIGVLS 528

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAGLVD G R F+ MS  + + P  EHY CM+DL  RAG LS+A   +E MP   D+
Sbjct: 529 ACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD 588

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
           +V   LL AC+   + +  +R  + +L++E + +G ++  + I+A+   W ++A +R LM
Sbjct: 589 VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648

Query: 542 REKGVSKTPGCSWIGIDD 559
           + KGV K PG SWI + D
Sbjct: 649 KSKGVIKEPGWSWIKVKD 666



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 208/392 (53%), Gaps = 21/392 (5%)

Query: 31  LKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNE 83
           LK C  +  +   ++IH Q +       +F+   +  + +      Y   LF ++S  + 
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDV 283

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
            ++  +I  L    Q+   +++ + +M+   + P+ +T+  V   CANL  +  G  +H+
Sbjct: 284 VSWTTIITTLVQMGQEEC-AVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            +  +GL     V +S++TMYA+CG+L S+  +F E+  RD+VSW+++I+GYS+ G+  E
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSE 402

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A EL   MR E   P E  L SVL +CG++  L  GK +  +V+   ++    + SALI+
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALIN 462

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG++  A R+FDA  N D+V+W AMI  YA++G S E I LF ++   G+ PD +T
Sbjct: 463 MYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVT 522

Query: 324 LIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIFC--GSIDDALKVFEDM 371
            IGVLSAC+  G +DLG         KY       H     D+ C  G + DA  + E M
Sbjct: 523 FIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAM 582

Query: 372 PV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
           P   ++V W+ ++ A   +G         ER+
Sbjct: 583 PFHRDDVVWSTLLRACRVHGDVERGRRTAERI 614



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 216/461 (46%), Gaps = 31/461 (6%)

Query: 35  PSTKTVQQIHTQML----------INFIQKP-----NFLLIRIIDLKDFNYASLLFHQIS 79
           P+  + + I  Q+L          I+FI +      N  L  ++       A  +F ++S
Sbjct: 17  PAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMS 76

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHG 138
           + +E ++  +I G   A    S +L L+  M+   GL+ D F       +C     +N+G
Sbjct: 77  QKDEISWTTLISGYVNA-NDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYG 135

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H    K GL     V  +L+ MY + GK+   R+VF E+  R++VSW ++I+G  + 
Sbjct: 136 ELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRA 195

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           GY KEA+  F  M       D  T    L +C D G L  G+ +    +K   D++ ++ 
Sbjct: 196 GYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVA 255

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + L  MY KCG L     +F+ M  +DVV+W  +IT   Q G    A+  F RM+ + V+
Sbjct: 256 NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVS 315

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P++ T   V+S CA++  ++ G+ +       GL   +            CG +  +  +
Sbjct: 316 PNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVI 375

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F +M   + VSW+ +I+  +  G   EA  L   M  EG   +P +     VLSAC +  
Sbjct: 376 FHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEG--PKPTEFALASVLSACGNMA 433

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           +++ G++L   +  S GL   +   S ++++Y + G + EA
Sbjct: 434 ILEHGKQLHAYV-LSIGLEHTAMVLSALINMYCKCGSIEEA 473


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 182/548 (33%), Positives = 308/548 (56%), Gaps = 21/548 (3%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLK C     +   ++IH Q+++N      F +  ++++    +    A  +F ++   +
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERD 240

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              +N +I G        + +L+L  +M+  G +PD+ T   +  + A++ +L  G S+H
Sbjct: 241 LVCWNTIISGYAQNGFGKT-ALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIH 299

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
               + G +   +VS +L+ MY++CG + +AR +FD +  + +VSWNSMI GY + G   
Sbjct: 300 GYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPG 359

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            A+E+F +M +E+     +T++  L +C DLGD+  G++V   + + ++  +  + ++LI
Sbjct: 360 AAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLI 419

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KC  +  A  +F+ + +K +V+WNAMI  YAQNG  NEAI  F +M+   + PD  
Sbjct: 420 SMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSF 479

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T++ V+ A A +  L   KW+     +  L  ++F           CG++  A K+F+ M
Sbjct: 480 TMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMM 539

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              +  +WNAMI     +G    AL LFE+M KE    +PN+VTF+ VLSAC H+GLV+E
Sbjct: 540 DERHVTTWNAMIDGYGTHGLGKAALELFEKMKKE--VIKPNEVTFLCVLSACSHSGLVEE 597

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G + F  M   +GL P  +HY  MVDL  RA  L+EAWDF+++MP +    V GA+LGAC
Sbjct: 598 GFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGAC 657

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  KN ++ ++    + +++  + G +V+ + I+A   MWD  A++R  M +KG+ KTPG
Sbjct: 658 RIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPG 717

Query: 552 CSWIGIDD 559
            S + + +
Sbjct: 718 WSVVELQN 725



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 240/464 (51%), Gaps = 19/464 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           LL+ C S K + Q    ++ N +   +    +++ L       + A+ +F  I    +  
Sbjct: 83  LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDEL 142

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           ++ M++G          ++  + +M+  G++P  + + ++   C +   L  G  +H  +
Sbjct: 143 YHTMLKGYARN-SSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQL 201

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
              G   +      ++ MYA+C  ++ A K+FD + ERDLV WN++ISGY++ G+ K A+
Sbjct: 202 IVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTAL 261

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           EL  RM+EE   PD IT+VS+L +  D+G L +G+ + G+ ++   +    + +AL+DMY
Sbjct: 262 ELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMY 321

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG++  AR +FD M  K VV+WN+MI  Y QNG    A+ +F +M    V    +T++
Sbjct: 322 SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVM 381

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
           G L ACA +G ++ G++V K   Q  L  D+            C  +D A ++FE++   
Sbjct: 382 GALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHK 441

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
             VSWNAMI   A NGR +EA+  F +M  +    +P+  T + V+ A     ++ + + 
Sbjct: 442 TLVSWNAMILGYAQNGRINEAIDYFCKMQLQN--IKPDSFTMVSVIPALAELSVLPQAKW 499

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +  L+  +  L       + +VD+YA+ G +  A    + M E+
Sbjct: 500 IHGLVIRTC-LDKNVFVATALVDMYAKCGAVHTARKLFDMMDER 542


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 188/550 (34%), Positives = 302/550 (54%), Gaps = 21/550 (3%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDLKD---FNYASL-LFHQIS 79
           L ++LK C +T ++++   +H   L +  +   FL   ++D+       Y +L +F +I 
Sbjct: 54  LSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR 113

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            P+  A++ MI GL         + +L++ M+R G +P+ FT   +  +  N+  L +G 
Sbjct: 114 NPDVVAWSAMITGLDQQGHG-QEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H  + K G + D+ VS+ LI MY +   ++   KVF+ +   DLVSWN+++SG+    
Sbjct: 173 SIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQ 232

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
                  +F +M  E F P+  T +SVL SC  L D   GK V   ++KN  D + ++G+
Sbjct: 233 TCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGT 292

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY K   L  A   FD +VN+D+ +W  +I+ YAQ   + +A+  F +M+  G+ P
Sbjct: 293 ALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKP 352

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           ++ TL   LS C+ +  L+ G+ +   A + G   DIF           CG ++ A  +F
Sbjct: 353 NEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIF 412

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + +   + VSWN +IS  + +G+  +AL  F  M  EG    P++ TFIGVLSAC   GL
Sbjct: 413 KGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEG--IMPDEATFIGVLSACSFMGL 470

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+EG++ FD MS  +G+ P  EHY+CMVD+  RAG  +E   F+E M      ++   +L
Sbjct: 471 VEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVL 530

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+   N D  ++  + L E+E     +Y++ S IFA+   WDD   +RALM  +G+ K
Sbjct: 531 GACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKK 590

Query: 549 TPGCSWIGID 558
            PGCSW+ +D
Sbjct: 591 EPGCSWVEVD 600



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 207/411 (50%), Gaps = 19/411 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  +   N  ++N ++ G           LKL+ +MK    K   FT   V   CA
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDG-KKVLKLFCKMKECETKFSKFTLSTVLKGCA 62

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N  +L  G  +H+   + G + D+ +  SL+ MY++CG +  A KVF +IR  D+V+W++
Sbjct: 63  NTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSA 122

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+G  + G+ +EA ELF  MR +   P++ TL S++ +  ++GDL  G+ + G + K  
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYG 182

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            + +  + + LI MY K   +    +VF+AM N D+V+WNA+++ +  +        +F 
Sbjct: 183 FESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS---------- 360
           +M   G  P+  T I VL +C+S+   + GK V  +  +     D F G+          
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKAR 302

Query: 361 -IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            ++DA   F+ +   +  SW  +IS  A   +A +A+  F +M +EG   +PN+ T    
Sbjct: 303 CLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREG--IKPNEYTLASC 360

Query: 420 LSACVHAGLVDEGRRLFDLM--SSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           LS C H   ++ GR+L  +   +  FG I      S +VDLY + G +  A
Sbjct: 361 LSGCSHMATLENGRQLHAVAVKAGHFGDIFVG---SALVDLYGKCGCMEHA 408



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 36/328 (10%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           ++ A ++F  + E++ VSWN++++GY+++G  K+ ++LF +M+E E    + TL +VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C + G L  GK +    +++  +++ ++G +L+DMY KCG +  A +VF  + N DVV W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           +AMIT   Q G   EA  LF+ M+  G  P++ TL  ++S   ++G L  G+ +     +
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 350 RGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            G   D    +           ++D  KVFE M   + VSWNA++S    +        +
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 399 FERMSKEGGAARPNDVTFIGVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIP 447
           F +M  EG   +PN  TFI VL +C           VHA ++       D + ++     
Sbjct: 241 FYQMLLEG--FKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA----- 293

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERM 475
                  +VD+YA+A  L +A    +R+
Sbjct: 294 -------LVDMYAKARCLEDAGVAFDRL 314


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/500 (38%), Positives = 286/500 (57%), Gaps = 21/500 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGL---TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           LF Q+   N  ++  MI G    +  W+    ++KL+ +M RLG KPD F    V  SC 
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWE----AMKLFGEMNRLGWKPDGFACTSVLTSCG 250

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L AL  G  VH+   K  L+ ++ V + LI MYA+   L  A+KVFD + E++++S+N+
Sbjct: 251 SLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNA 310

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GYS      EA+ELF  MR   F P  +T VS+LG    L  L L K + G ++K  
Sbjct: 311 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXG 370

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ + GSALID+Y KC  +  AR VF+ M  KD+V WNAM   Y Q+  + EA+ L++
Sbjct: 371 VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYS 430

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            ++++   P++ T   +++A +++ +L  G+       + GL    F           CG
Sbjct: 431 TLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCG 490

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SI++A K+F      + V WN+MIS  A +G A EAL +F  M KEG   +PN VTF+ V
Sbjct: 491 SIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG--IQPNYVTFVAV 548

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC HAG V++G   F+ M   FG+ P +EHY+C+V L  R+G L EA +F+E+MP + 
Sbjct: 549 LSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEP 607

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
             IV  +LL AC+   N ++ +   ++ +  +  +SG+Y++ S IFA+  MW D  K+R 
Sbjct: 608 AAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRD 667

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            M    V K PG SWI +++
Sbjct: 668 RMDSSEVVKEPGRSWIEVNN 687



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 233/461 (50%), Gaps = 24/461 (5%)

Query: 27  LLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L S+++ C     V+   Q+H  ++ +   +  ++   +ID      B   A L+F Q+ 
Sbjct: 40  LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLL 99

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
                 +  +I G T   +    SL+L+ QM+   + PD +    V  +C+ L  L  G 
Sbjct: 100 EKTAVTWTTIIAGYTKCGRSXV-SLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 158

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H+ V + G + D  V + LI  Y +C ++ + RK+FD++  ++++SW +MISGY +  
Sbjct: 159 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 218

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +  EA++LFG M    + PD     SVL SCG L  L  G+ V  + +K  ++ N ++ +
Sbjct: 219 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKN 278

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LIDMY K   L  A++VFD M  ++V+++NAMI  Y+     +EA+ LF+ M+     P
Sbjct: 279 GLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPP 338

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVF 368
             +T + +L   AS+ AL+L K +     + G+  D+F GS           + DA  VF
Sbjct: 339 SLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVF 398

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E+M   + V WNAM      +    EAL L+  +  +    +PN+ TF  +++A  +   
Sbjct: 399 EEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL--QFSRQKPNEFTFAALITAASNLAS 456

Query: 429 VDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           +  G++  + L+       P   +   +VD+YA+ G + EA
Sbjct: 457 LRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEA 495



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 208/411 (50%), Gaps = 38/411 (9%)

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
           ++ G  P+ F    V  +C  L  +  G  +H  V + G D+D +V  SLI  Y++ G +
Sbjct: 29  RKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBI 88

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           + AR VFD++ E+  V+W ++I+GY+K G +  ++ELF +MRE   +PD   + SVL +C
Sbjct: 89  EVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSAC 148

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             L  L  GK +  +V++   +++  + + LID Y KC  +   R++FD MV K++++W 
Sbjct: 149 SMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWT 208

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            MI+ Y QN    EA+ LF  M   G  PD      VL++C S+ AL+ G+ V  Y  + 
Sbjct: 209 TMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKA 268

Query: 351 GLRHDIFC--GSID---------DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
            L  + F   G ID         DA KVF+ M   N +S+NAMI   +   +  EAL LF
Sbjct: 269 NLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELF 328

Query: 400 ERMSKEGGAARPNDVTFIGV-----------LSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
             M        P+ +TF+ +           LS  +H  ++  G  L DL +        
Sbjct: 329 HEMRVR--LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSL-DLFAG------- 378

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL-LGACQKQKNTD 498
               S ++D+Y++  ++ +A    E M EK D +V  A+  G  Q  +N +
Sbjct: 379 ----SALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQHLENEE 424


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 306/545 (56%), Gaps = 28/545 (5%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S L+ C + ++    +Q+H++++    +   F+   +ID+     D      +F ++   
Sbjct: 180 SALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGER 239

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGV 139
           N+  +N +I      +  ++ +L L+ +M+    G++PD FT+  +   CAN    N G 
Sbjct: 240 NQVTWNSIISA-EAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGR 298

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H+ + +  + ++  V   L+ MY+ CG+L+ A+++F+ + ER+  SWNSMI GY + G
Sbjct: 299 QIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNG 358

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +EA+ LF +M+     PD  +L S+L SC  L D   G+ +  F+V+N M+    +  
Sbjct: 359 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 418

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVT--WNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            L+DMY KCG++  A +V+D  + KD  T  WN+++  YA  GL  E+   F  M  + +
Sbjct: 419 VLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDI 478

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377
             D +T++ +++      AL     VD Y+          CG+I  A  VF++M   N V
Sbjct: 479 EYDVLTMVTIVNLLVLETAL-----VDMYSK---------CGAITKARTVFDNMNGKNIV 524

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           SWNAMIS  + +G + EAL+L+E M K+G    PN+VTF+ +LSAC H GLV+EG R+F 
Sbjct: 525 SWNAMISGYSKHGCSKEALILYEEMPKKG--MYPNEVTFLAILSACSHTGLVEEGLRIFT 582

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
            M   + +  K+EHY+CMVDL  RAG L +A +FVE+MP + +    GALLGAC+  K+ 
Sbjct: 583 SMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 642

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           D+ +   Q L E++  N G YVI S I+A    W +   +R +M+ KGV K PG SWI I
Sbjct: 643 DMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 702

Query: 558 DDPKQ 562
           +   Q
Sbjct: 703 NSEIQ 707



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/499 (29%), Positives = 248/499 (49%), Gaps = 42/499 (8%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRII-------DLKDFNYASLLFHQI 78
           SL++ C  + + Q+   IHTQM+ N      +L+ +I+        L D  YA  LF ++
Sbjct: 76  SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEM 135

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
              N  A+N MI         Y  +  ++ +M ++G+ PDNFT+      C  L + + G
Sbjct: 136 PERNLTAWNTMILAYARV-DDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 194

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             VHS +   G   D  V ++LI MYA+C   +S  KVFDE+ ER+ V+WNS+IS  ++ 
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQF 254

Query: 199 GYAKEAVELFGRMREEE--FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           G+  +A+ LF RM+E E    PD+ T  ++L  C +  +   G+ +   +++  +  N  
Sbjct: 255 GHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 314

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + + L+ MY +CG L  A+ +F+ M  ++  +WN+MI  Y QNG + EA+ LF +M+  G
Sbjct: 315 VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNG 374

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDAL 365
           + PD  +L  +LS+C S+     G+ +  +  +  +           D++  CGS+D A 
Sbjct: 375 IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 434

Query: 366 KVFEDM--PVTNEVSWNAMISALAFNGRAHEALLLF-ERMSKEGGAARPNDVTFIGVL-- 420
           KV++       N   WN++++  A  G   E+   F E +  +        VT + +L  
Sbjct: 435 KVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVL 494

Query: 421 -SACV----HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            +A V      G + + R +FD M+           ++ M+  Y++ G   EA    E M
Sbjct: 495 ETALVDMYSKCGAITKARTVFDNMNGK-----NIVSWNAMISGYSKHGCSKEALILYEEM 549

Query: 476 PEK---VDEIVLGALLGAC 491
           P+K    +E+   A+L AC
Sbjct: 550 PKKGMYPNEVTFLAILSAC 568



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 222/451 (49%), Gaps = 33/451 (7%)

Query: 49  INFIQKPNFLLIRIIDLKDFN-YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY 107
           IN++ +P+        L  FN + S  F  +  PN  +F+    G TT   K   +    
Sbjct: 5   INYLFQPS--------LNHFNCHYSRHFFLLPNPNSKSFSAHF-GHTTTTIKLKFNGPDS 55

Query: 108 YQMKRLGLKPDNFTYPFVFIS----CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
            +   +  KP +   P  + S    C +  +   G S+H+ +   G + D ++   ++ +
Sbjct: 56  PKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILML 115

Query: 164 YARCGKLDS---ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           YAR G LD    ARK+F+E+ ER+L +WN+MI  Y+++    EA  +F RM +    PD 
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T  S L  CG L     GK V   ++      + ++G+ALIDMY KC       +VFD 
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 235

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA--GVNPDKITLIGVLSACASIGALD 338
           M  ++ VTWN++I+A AQ G  N+A++LF RM+ +  G+ PD+ T   +L+ CA+    +
Sbjct: 236 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +  +  +  +  +I            CG ++ A ++F  M   N  SWN+MI    
Sbjct: 296 QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 355

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            NG   EAL LF++M   G   +P+  +   +LS+CV      +GR L + +  +  +  
Sbjct: 356 QNGETQEALRLFKQMQLNG--IKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN-TMEE 412

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +      +VD+YA+ G +  AW   ++  +K
Sbjct: 413 EGILQVVLVDMYAKCGSMDYAWKVYDQTIKK 443


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 200/608 (32%), Positives = 310/608 (50%), Gaps = 83/608 (13%)

Query: 29  SLLKKCPSTKT---VQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRP 81
           +LLK C  T      + +H+ ++        FLL  +I     L    YA  +F Q+  P
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 82  N--------------------EYAFNVMIRGLTTAWQK----YSHSLKLYYQMK--RLGL 115
           N                    EY F+ M R    +W      Y+    +Y  +K   L L
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 116 KPDN------FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           K D        T+  + I  +    +  G  +H  V K G      V   L+ MY++ G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 170 LDSARKVFDEI-------------------------------RERDLVSWNSMISGYSKM 198
           +  ARKVFDE+                               RERD +SW SMI+G+++ 
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G  ++A+++F  M+ E    D+ T  SVL +CG +  L  GK V  ++++     N ++ 
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA 313

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           SAL+DMY KC  +  A  VF  M  K+VV+W AM+  Y QNG S EA+  F+ M+  G+ 
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD  TL  V+S+CA++ +L+ G      A   GL   I            CGSI+D+ ++
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F ++   +EV+W A++S  A  G+A+E + LFE M   G   +P+ VTFIGVLSAC  AG
Sbjct: 434 FNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHG--LKPDKVTFIGVLSACSRAG 491

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           LV++G ++F+ M +  G++P  +HY+CM+DL++RAG + EA +F+ +MP   D I    L
Sbjct: 492 LVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATL 551

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L +C+   N D+ +   + L+E++  N+ +YV+ S ++A    W++ A++R  MR+KG+ 
Sbjct: 552 LSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLR 611

Query: 548 KTPGCSWI 555
           K PGCSWI
Sbjct: 612 KEPGCSWI 619


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 186/497 (37%), Positives = 280/497 (56%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F++I +P+  ++N +I G     +K   +LKL  +M    + P  FT      +CA + 
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLH-EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIG 303

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G  +HS++ K+ ++ D  V   LI MY++CG L  AR VFD +  +D++ WNS+IS
Sbjct: 304 LVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIIS 363

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GYS  GY  EA+ LF  M +E    ++ TL ++L S          + V    +K+    
Sbjct: 364 GYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQY 423

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + Y+ ++L+D YGKC  L  A +VF+    +D+V + +MITAY+Q GL  EA+ ++ RM+
Sbjct: 424 DGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQ 483

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
              + PD      + +ACA++ A + GK +  +  + GL  D+F           CGSID
Sbjct: 484 DRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSID 543

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA  +F ++     VSW+AMI  LA +G   +AL LF +M K G    PN +T + VLSA
Sbjct: 544 DASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNG--ILPNHITLVSVLSA 601

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLV E RR F LM   FG+ P  EHY+CMVD+  R G L EA   V+ MP +    
Sbjct: 602 CNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAA 661

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V GALLGA +  KN ++ +   ++LL +E   SG +++ + I+A+  MWD+ AK+R  M+
Sbjct: 662 VWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMK 721

Query: 543 EKGVSKTPGCSWIGIDD 559
              V K PG SWI + D
Sbjct: 722 NSLVKKEPGMSWIELKD 738



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 213/405 (52%), Gaps = 18/405 (4%)

Query: 79  SRPNEYAFNVMIRGLTTAWQ----KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           ++ NE+ F+ +++G +        K  H + L  +M   G+ P+ F+   V  +CA L  
Sbjct: 144 AKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLED 203

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
            N+G+ VH  + K+G D D   +++L+ MYA+ G  ++A  VF EI + D+VSWN++I+G
Sbjct: 204 ENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAG 263

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
                    A++L G+M      P   TL S L +C  +G + LG+ +   ++K  M+ +
Sbjct: 264 CVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPD 323

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++G  LIDMY KCG L  AR VFD M  KDV+ WN++I+ Y+  G   EA+ LF  M  
Sbjct: 324 SFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYK 383

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            G+  ++ TL  +L + A   A    + V   + + G ++D +           C  ++D
Sbjct: 384 EGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLED 443

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A KVFE  P  + V++ +MI+A +  G   EAL ++ RM       +P+   F  + +AC
Sbjct: 444 AAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRD--IKPDAFIFSSLFNAC 501

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +    ++G+++  +     GL+      + +V++YA+ G + +A
Sbjct: 502 ANLSAYEQGKQI-HVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDA 545



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 170/415 (40%), Gaps = 86/415 (20%)

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA---------------- 204
           + +Y++C     ARK+  +  E DLVSW+++ISGY + G  +EA                
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 205 ------------------------VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
                                   V L   M      P+E +L +VL +C  L D   G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V G+++K   D + +  +AL+DMY K G    A  VF  +   D+V+WNA+I     + 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            ++ A+ L  +M    V P   TL   L ACA+IG + LG+ +     +  +  D F   
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG + DA  VF+ MP  + + WN++IS  +  G   EA+ LF  M KEG   
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEG--L 386

Query: 410 RPNDVTFIGVLSAC-----------VHAGLVDEGRR-----------------LFDLMSS 441
             N  T   +L +            VH   +  G +                 L +  + 
Sbjct: 387 EFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 442 SFGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGALLGAC 491
            F + P  +   Y+ M+  Y++ G   EA     RM +   K D  +  +L  AC
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC 501


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 184/512 (35%), Positives = 298/512 (58%), Gaps = 15/512 (2%)

Query: 57  FLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           F  +R + ++    A  LF ++   +  ++N MI G  +        L L+ QM  LG+ 
Sbjct: 190 FKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLS-EKGLDLFEQMLLLGIN 248

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
            D  T   V   C+N   L  G ++H    K    ++  +++ L+ MY++ G L+SA +V
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQV 308

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
           F+ + ER +VSW SMI+GY++ G +  +V LF  M +E   PD  T+ ++L +C   G L
Sbjct: 309 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLL 368

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
             GK V  ++ +NKM  + ++ +AL+DMY KCG++  A  VF  M  KD+V+WN MI  Y
Sbjct: 369 ENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGY 428

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---R 353
           ++N L NEA+ LF  M+Y    P+ IT+  +L ACAS+ AL+ G+ +  +  + G    R
Sbjct: 429 SKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 487

Query: 354 H------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           H      D++  CG++  A  +F+ +P  + VSW  MI+    +G   EA+  F  M   
Sbjct: 488 HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G    P++V+FI +L AC H+GL+DEG   F++M ++  + PKSEHY+C+VDL ARAG+L
Sbjct: 548 G--IEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNL 605

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
           S+A+ F++ MP + D  + GALL  C+   +  ++++V + + E+E  N+G YV+ + I+
Sbjct: 606 SKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIY 665

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           A  + W++  K+R  +  +G+ K PGCSWI I
Sbjct: 666 AEAEKWEEVKKLRERIGRRGLRKNPGCSWIEI 697



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 203/420 (48%), Gaps = 68/420 (16%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  V   CA+L ++  G  +HS +    ++ D  +   L+ MY  CG L   R++FD++
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMRE--------------------------- 213
               +  WN +++GY+K+G  +E++ LF RMRE                           
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 214 -----------------EEFL-----PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
                            E+ L      D  T+VSV+  C + G L+LG+ + G+ +K   
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
                + + L+DMY K G L  A +VF+ M  + VV+W +MI  YA+ GLS+ ++ LF+ 
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M+  G++PD  T+  +L ACA  G L+ GK V  Y  +  ++ D+F           CGS
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGS 402

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           + DA  VF +M V + VSWN MI   + N   +EAL LF  M      ++PN +T   +L
Sbjct: 403 MGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN---SKPNSITMACIL 459

Query: 421 SACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPEK 478
            AC     ++ G+ +   ++ + F L     H +  +VD+Y + G L  A    + +PEK
Sbjct: 460 PACASLAALERGQEIHGHILRNGFSL---DRHVANALVDMYLKCGALGLARLLFDMIPEK 516



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 190/426 (44%), Gaps = 74/426 (17%)

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            +Y  C  + ++  +  E  +  +  +N  I  + ++G  + A+EL  +  + +   +  
Sbjct: 46  NLYHSCATIGTS-VLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDL--ELR 102

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           T  SVL  C DL  +  G+ +   +  N ++++  +GS L+ MY  CG L   RR+FD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 282 VN-------------------------------------------------KDVVTWNAM 292
            N                                                 +DV++WN+M
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I+ Y  NGLS + + LF +M   G+N D  T++ V++ C++ G L LG+ +  YA +   
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             ++             G+++ A++VFE M   + VSW +MI+  A  G +  ++ LF  
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLY 459
           M KEG    P+  T   +L AC   GL++ G+ + + +  +     +S+ +  + ++D+Y
Sbjct: 343 MEKEG--ISPDIFTITTILHACACTGLLENGKDVHNYIKEN---KMQSDLFVSNALMDMY 397

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
           A+ G + +A      M  K D +    ++G   K     +    + L +E++ ++  N +
Sbjct: 398 AKCGSMGDAHSVFSEMQVK-DIVSWNTMIGGYSKN---SLPNEALNLFVEMQYNSKPNSI 453

Query: 520 ISSKIF 525
             + I 
Sbjct: 454 TMACIL 459


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 301/545 (55%), Gaps = 36/545 (6%)

Query: 41  QQIHTQMLIN-FIQKPNFLLIRIIDL----KDFNYASLLF----HQISRPNEYAFNVMIR 91
           ++IH+ MLIN F+  P   +  +I++       N+A  +F    H+I   N +AFN +I 
Sbjct: 57  KEIHSYMLINGFLNSP-LSITSLINMYSKCNQMNFALSIFSDPTHEI---NVFAFNAIIS 112

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD 151
           G  T         + Y +M+  G+ PD FT+P    +C ++L +     +H  +FK GL+
Sbjct: 113 GFITNGFP-EEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLE 168

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
            D  +  +L+  Y + G ++ A+  F+E+  RD+V WN+M++GY+++G  +  +E F RM
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
            +E  +P   T+  VL     +GDL  G+ + GF +K   D    + ++LIDMYGKC  +
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             A  +F+ M  KD+ +WN++++ + Q G  +  + L +RM  AG+ PD +T+  VL AC
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 332 ASIGALDLGKWVDKYASQRGLRHD-----------------IFCGSIDDALKVFEDMPVT 374
           + + AL  G+ +  Y    GL  D                   CGS+ DA  VFE M   
Sbjct: 349 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           +  SWN MI     +G  +EAL +F RM +     +P++VTF+GVLSAC HAG V +GR 
Sbjct: 409 DVASWNIMIMGYGMHGYGNEALEMFSRMCEV--QLKPDEVTFVGVLSACSHAGFVSQGRN 466

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
               M S + + P  EHY+C++D+  RAG L EA++    MP + + +V  ALL AC+  
Sbjct: 467 FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLH 526

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           K+  +++   Q + E+E  + G+YV+ S ++  +  +++  ++R  MR++ V KTPGCSW
Sbjct: 527 KHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSW 586

Query: 555 IGIDD 559
           I + +
Sbjct: 587 IELKN 591



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 196/398 (49%), Gaps = 31/398 (7%)

Query: 106 LYYQMKRLGLKPDNFTYPFVFISC-ANLLALNH------GVSVHSSVFKIGLDEDDHVSH 158
           L++    +     +F  P+   +C A+L A  H      G  +HS +   G         
Sbjct: 17  LFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSIT 76

Query: 159 SLITMYARCGKLDSARKVF-DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           SLI MY++C +++ A  +F D   E ++ ++N++ISG+   G+ +E  E + +MR E  +
Sbjct: 77  SLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVI 136

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           PD+ T    + +C D+ ++   K + G + K  ++L+ ++GSAL++ Y K G +  A+  
Sbjct: 137 PDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVA 193

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+ +  +DVV WNAM+  YAQ G     +  F RM    V P + T+ GVLS  A +G L
Sbjct: 194 FEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDL 253

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           + G+ +  +A + G    +            C  I+DAL++FE M   +  SWN+++S  
Sbjct: 254 NNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVH 313

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
              G     L L +RM   G   +P+ VT   VL AC H   +  GR +   M  S GL 
Sbjct: 314 EQCGDHDGTLRLLDRML--GAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVS-GLG 370

Query: 447 PKSEHY------SCMVDLYARAGHLSEAWDFVERMPEK 478
              +        + ++D+YA+ G + +A    ERM  K
Sbjct: 371 KDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/501 (36%), Positives = 284/501 (56%), Gaps = 24/501 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F  +   N  ++  MI G  +  QK +  +L L+  M+R     +     FVF S 
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYAS--QKLAAEALGLFRLMRR----EEEGENEFVFTSV 215

Query: 130 ANLLAL----NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            + L L    N+G  +H    K GL     V ++L+TMYA+CG LD A + F+   +++ 
Sbjct: 216 LSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNS 275

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           ++W++MI+GY++ G + +A++LF  M      P E T V V+ +C DLG    GK V  +
Sbjct: 276 ITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDY 335

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++K   +   Y+ +AL+DMY KC ++V AR+ FD +   D+V W +MI  Y QNG + +A
Sbjct: 336 LLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDA 395

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI--------- 356
           + L+ RM+  G+ P+++T+  VL AC+S+ AL+ GK +     + G   ++         
Sbjct: 396 LSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTM 455

Query: 357 --FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG + D   VF  MP  + +SWNAMIS L+ NG   EAL LFE M  EG   +P+ V
Sbjct: 456 YAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEG--TKPDYV 513

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ +LSAC H GLV+ G   F +M   FG+ P+ EHY+CMVD+ +RAG L EA +F E 
Sbjct: 514 TFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTES 573

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
                   +   +LGAC+  +N ++     + L+E+ S  S  YV+ S I++ L  W+D 
Sbjct: 574 ATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDV 633

Query: 535 AKMRALMREKGVSKTPGCSWI 555
            ++R +M+ +GVSK PGCSWI
Sbjct: 634 ERVRRMMKLRGVSKEPGCSWI 654



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 220/423 (52%), Gaps = 21/423 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTT-AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F +I   +  ++N +I G +       SH ++L+ +M+     P+  T+  VF + 
Sbjct: 59  AKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAA 118

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L+    G   H+   K+    D  V  SL+ MY + G    ARKVFD + ER+ VSW 
Sbjct: 119 STLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWA 178

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV-LGKWVEGFVVK 248
           +MISGY+    A EA+ LF  MR EE   +E    SVL S   L +LV  GK +    VK
Sbjct: 179 TMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVL-SALTLPELVNNGKQIHCIAVK 237

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N +     +G+AL+ MY KCG+L  A + F+   +K+ +TW+AMIT YAQ+G S++A+ L
Sbjct: 238 NGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKL 297

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F+ M  +G+ P + T +GV++AC+ +GA   GK V  Y  + G    I+           
Sbjct: 298 FSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAK 357

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C SI DA K F+ +   + V W +MI     NG   +AL L+ RM  EG    PN++T  
Sbjct: 358 CSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEG--ILPNELTMA 415

Query: 418 GVLSACVHAGLVDEGRRLF-DLMSSSFGL-IPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            VL AC     +++G+++    +   FGL +P     S M   YA+ G L +      RM
Sbjct: 416 SVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTM---YAKCGCLKDGTLVFRRM 472

Query: 476 PEK 478
           P +
Sbjct: 473 PAR 475



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 163/304 (53%), Gaps = 5/304 (1%)

Query: 41  QQIHT----QMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +QIH       L++ +   N L+         + A   F   S  N   ++ MI G   +
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQS 288

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
                 +LKL+  M   G++P  FT+  V  +C++L A   G  VH  + K+G +   +V
Sbjct: 289 GDS-DKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYV 347

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             +L+ MYA+C  +  ARK FD ++E D+V W SMI GY + G  ++A+ L+GRM  E  
Sbjct: 348 MTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGI 407

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           LP+E+T+ SVL +C  L  L  GK +    VK    L   +GSAL  MY KCG L     
Sbjct: 408 LPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTL 467

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VF  M  +DV++WNAMI+  +QNG   EA+ LF  M+  G  PD +T + +LSAC+ +G 
Sbjct: 468 VFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGL 527

Query: 337 LDLG 340
           ++ G
Sbjct: 528 VERG 531



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 206/396 (52%), Gaps = 19/396 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P N ++    +   +  +L  G ++H+ + K       ++++SL+ +YA+C +L  A+ V
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFV 62

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEA--VELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           F+ I+ +D+VSWN +I+GYS+ G +  +  +ELF RMR E   P+  T   V  +   L 
Sbjct: 63  FERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLV 122

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D   G+      +K     + ++GS+L++MY K G    AR+VFD M  ++ V+W  MI+
Sbjct: 123 DAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMIS 182

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            YA   L+ EA+ LF  M+      ++     VLSA      ++ GK +   A + GL  
Sbjct: 183 GYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLS 242

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            +            CGS+DDAL+ FE     N ++W+AMI+  A +G + +AL LF  M 
Sbjct: 243 IVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMH 302

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G   RP++ TF+GV++AC   G   EG+++ D +    G   +    + +VD+YA+  
Sbjct: 303 LSG--IRPSEFTFVGVINACSDLGAAWEGKQVHDYL-LKLGFESQIYVMTALVDMYAKCS 359

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGA-CQKQKNTD 498
            + +A    + + E  D ++  +++G   Q  +N D
Sbjct: 360 SIVDARKGFDYLQEP-DIVLWTSMIGGYVQNGENED 394


>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
          Length = 586

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 270/496 (54%), Gaps = 69/496 (13%)

Query: 80  RPN-EYAFNVMIRGLTTAWQK----YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           RP   + FN +I  LT A        + +L L       G +PD +T P    +CA L  
Sbjct: 73  RPRCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGG 132

Query: 135 -LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G   H+   K G      V ++L+T Y  CG+   ARKVFDE+ ERD+VSW +++S
Sbjct: 133 GLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLS 192

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            +++ G   EA+   G + E +  P+E+TL SVL +CG+LG    GK V G+  + + +L
Sbjct: 193 AFTRGGMFMEAL---GVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKEL 249

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  +G+AL+DMY KC  L  ARRVFD ++ +D+V+W  MI+   Q    +EA+ +FN M+
Sbjct: 250 NLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQ 309

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +GV PDK+ L  VLSACAS+GAL+ G+WV +Y  ++G+  D+            CG +D
Sbjct: 310 ISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLD 369

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A+ +F++MP+ N  SWNA+I+  A +GR  EAL  F+RM   G    PN+VTFI VL A
Sbjct: 370 TAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASG--LHPNEVTFITVLGA 427

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H+GLV EGR+LF+LM+ S+ L P  +HY CMVDL  RAG + EA+D ++ MP +    
Sbjct: 428 CCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMR---- 483

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
                           VS R                            W D  K R  M 
Sbjct: 484 ---------------PVSDR----------------------------WADVGKARGFMN 500

Query: 543 EKGVSKTPGCSWIGID 558
           EKG+ K PG S I ++
Sbjct: 501 EKGMQKEPGSSVIEVN 516


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 301/545 (55%), Gaps = 36/545 (6%)

Query: 41  QQIHTQMLIN-FIQKPNFLLIRIIDL----KDFNYASLLF----HQISRPNEYAFNVMIR 91
           ++IH+ MLIN F+  P   +  +I++       N+A  +F    H+I   N +AFN +I 
Sbjct: 57  KEIHSYMLINGFLNSP-LSITSLINMYSKCNQMNFALSIFSDPTHEI---NVFAFNAIIS 112

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD 151
           G  T         + Y +M+  G+ PD FT+P    +C ++L +     +H  +FK GL+
Sbjct: 113 GFITNGFP-EEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLE 168

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
            D  +  +L+  Y + G ++ A+  F+E+  RD+V WN+M++GY+++G  +  +E F RM
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
            +E  +P   T+  VL     +GDL  G+ + GF +K   D    + ++LIDMYGKC  +
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             A  +F+ M  KD+ +WN++++ + Q G  +  + L +RM  AG+ PD +T+  VL AC
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 332 ASIGALDLGKWVDKYASQRGLRHD-----------------IFCGSIDDALKVFEDMPVT 374
           + + AL  G+ +  Y    GL  D                   CGS+ DA  VFE M   
Sbjct: 349 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           +  SWN MI     +G  +EAL +F RM +     +P++VTF+GVLSAC HAG V +GR 
Sbjct: 409 DVASWNIMIMGYGMHGYGNEALEMFSRMCEV--QLKPDEVTFVGVLSACSHAGFVSQGRN 466

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
               M S + + P  EHY+C++D+  RAG L EA++    MP + + +V  ALL AC+  
Sbjct: 467 FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLH 526

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           K+  +++   Q + E+E  + G+YV+ S ++  +  +++  ++R  MR++ V KTPGCSW
Sbjct: 527 KHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSW 586

Query: 555 IGIDD 559
           I + +
Sbjct: 587 IELKN 591



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 198/398 (49%), Gaps = 31/398 (7%)

Query: 106 LYYQMKRLGLKPDNFTYPFVFISC-ANLLALNH------GVSVHSSVFKIGLDEDDHVSH 158
           L++    +     +F  P+   +C A+L A  H      G  +HS +   G         
Sbjct: 17  LFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSIT 76

Query: 159 SLITMYARCGKLDSARKVF-DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           SLI MY++C +++ A  +F D   E ++ ++N++ISG+   G+ +E  E + +MR E  +
Sbjct: 77  SLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVI 136

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           PD+ T    + +C D+ ++   K + G + K  ++L+ ++GSAL++ Y K G +  A+  
Sbjct: 137 PDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVA 193

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+ +  +DVV WNAM+  YAQ G     +  F RM    V P + T+ GVLS  A +G L
Sbjct: 194 FEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDL 253

Query: 338 DLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           + G+ +  +A + G            D++  C  I+DAL++FE M   +  SWN+++S  
Sbjct: 254 NNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVH 313

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL- 445
              G     L L +RM   G   +P+ VT   VL AC H   +  GR +   M  S GL 
Sbjct: 314 EQCGDHDGTLRLLDRML--GAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVS-GLG 370

Query: 446 -----IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                I      + ++D+YA+ G + +A    ERM  K
Sbjct: 371 KDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/485 (38%), Positives = 278/485 (57%), Gaps = 18/485 (3%)

Query: 85  AFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           ++NV +R L  A+Q  ++ S+ LY  M R G  PD F++PF+  SCA+L     G  +H 
Sbjct: 17  SWNVRLREL--AYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 74

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL--VSWNSMISGYSKMGYA 201
            V + G + +  V  +LI+MY +CG ++ ARKVF+E        V +N++ISGY+     
Sbjct: 75  HVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKV 134

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            +A  +F RM+E     D +T++ ++  C     L LG+ + G  VK        + ++ 
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSF 194

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KCG++   RR+FD M  K ++TWNA+I+ Y+QNGL+ + + LF +MK +GV PD 
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDP 254

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL+ VLS+CA +GA  +G+ V +     G   ++F           CG++  A  VF+ 
Sbjct: 255 FTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MPV + VSW AMI     +G     L LF+ M K G   RP+   F+ VLSAC H+GL D
Sbjct: 315 MPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRG--IRPDGAVFVMVLSACSHSGLTD 372

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +G  LF  M   + L P  EHYSC+VDL  RAG L EA +F++ MP + D  V GALLGA
Sbjct: 373 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGA 432

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN D+++     ++E E  N G YV+ S I+++ K  +   ++R +MRE+   K P
Sbjct: 433 CKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 492

Query: 551 GCSWI 555
           G S++
Sbjct: 493 GYSYV 497



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 198/395 (50%), Gaps = 23/395 (5%)

Query: 30  LLKKCPSTK---TVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LK C S     + QQ+H  ++    +   F+L  +I +         A  +F +    +
Sbjct: 56  ILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSS 115

Query: 83  EYA--FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           +    +N +I G T A  K S +  ++ +MK  G+  D+ T   +   C     L  G S
Sbjct: 116 QLGVCYNALISGYT-ANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRS 174

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K G   +  V +S ITMY +CG ++S R++FDE+  + L++WN++ISGYS+ G 
Sbjct: 175 LHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGL 234

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A + +ELF +M+     PD  TLVSVL SC  LG   +G+ V   V  N    N ++ +A
Sbjct: 235 AYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNA 294

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LI MY +CG L  AR VFD M  K +V+W AMI  Y  +G+    + LF+ M   G+ PD
Sbjct: 295 LISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPD 354

Query: 321 KITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVF 368
               + VLSAC+  G  D G  +      +Y  + G  H     D+    G +D+A++  
Sbjct: 355 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 414

Query: 369 EDMPVTNE-VSWNAMISALAFNGRAHEALLLFERM 402
           + MPV  +   W A++ A   +     A L F ++
Sbjct: 415 DSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKV 449


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 297/549 (54%), Gaps = 29/549 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQ 77
           + +LS L+ C S   + Q+H  M+ + + +    L R+ID         + +YA  +F  
Sbjct: 7   KPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  P+ Y +N MIRG + +      +L  Y +M R G  PD FT+P+V  +C+ L  +  
Sbjct: 67  IDCPSVYIWNSMIRGYSNSPNP-DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 125

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VH  V K G + + +VS  L+ MY  CG+++   +VF++I + ++V+W S+ISG+  
Sbjct: 126 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN 185

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
                +A+E F  M+      +E  +V +L +CG   D            ++K+  N  +
Sbjct: 186 NNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYF---------QSKVGFNVIL 236

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++LIDMY KCG L  AR +FD M  + +V+WN++IT Y+QNG + EA+ +F  M   G+
Sbjct: 237 ATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI 296

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--IFC---------GSIDDALK 366
            PDK+T + V+ A    G   LG+ +  Y S+ G   D  I C         G  + A K
Sbjct: 297 APDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKK 356

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
            FED+   + ++W  +I  LA +G  +EAL +F+RM +E G A P+ +T++GVL AC H 
Sbjct: 357 AFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRM-QEKGNATPDGITYLGVLYACSHI 415

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV+EG+R F  M    GL P  EHY CMVD+ +RAG   EA   V+ MP K +  + GA
Sbjct: 416 GLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGA 475

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL  C   +N +++ R+  ++ E E   SG YV+ S I+A    W D   +R  M+ K V
Sbjct: 476 LLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRV 535

Query: 547 SKTPGCSWI 555
            K  G S +
Sbjct: 536 DKVLGHSSV 544


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/497 (36%), Positives = 292/497 (58%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + R +   +N MI G          +L L+  M R G +PD+ T   +  +  +L 
Sbjct: 299 LFELLPRDDLVTWNGMISGCVQN-GLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLN 357

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  VH  + +  +  D  +  +L+ +Y +C  + +AR ++D  R  D+V  +++IS
Sbjct: 358 GLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVIS 417

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY   G +++A+++F  + E+   P+ +T+ SVL +C  +  L LG+ + G+V++N  + 
Sbjct: 418 GYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEG 477

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             Y+ SAL+DMY KCG L  +  +F  M  KD VTWN+MI++++QNG   EA+ LF +M 
Sbjct: 478 KCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMC 537

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             G+  + +T+   LSACAS+ A+  GK +     +  ++ DIF           CG+++
Sbjct: 538 MEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNME 597

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            AL+VFE MP  NEVSWN++ISA   +G   E++    RM +EG   +P+ VTF+ ++SA
Sbjct: 598 LALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEG--YKPDHVTFLALISA 655

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLV+EG +LF  M+  + + P+ EH++CMVDLY+R+G L +A  F+  MP K D  
Sbjct: 656 CAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAG 715

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL AC+  +N +++    Q L +++  NSG YV+ S I A    WD  +K+R LM+
Sbjct: 716 IWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMK 775

Query: 543 EKGVSKTPGCSWIGIDD 559
           +  + K PG SW+ +++
Sbjct: 776 DNKILKIPGYSWVDVNN 792



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/419 (34%), Positives = 234/419 (55%), Gaps = 22/419 (5%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS-CANLLALNHGVSVHSS 144
           +NVM+ G   A      +++L+  M+  G +P NF     F+S CA    L  GV +HS 
Sbjct: 210 WNVMMDGYIKA-GDVGGAVRLFRNMRVSGCEP-NFATLACFLSVCAAEADLLSGVQLHSL 267

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K GL+++  V+++L++MYA+C  LD A ++F+ +   DLV+WN MISG  + G   EA
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEA 327

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + LF  M      PD +TLVS+L +  DL  L  GK V G++++N + ++ ++ SAL+D+
Sbjct: 328 LGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDI 387

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KC  +  AR ++DA    DVV  + +I+ Y  NG+S +A+ +F  +    + P+ +T+
Sbjct: 388 YFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTV 447

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
             VL ACASI AL LG+ +  Y  +       +           CG +D +  +F  M +
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSL 507

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            +EV+WN+MIS+ + NG   EAL LF +M  EG   + N+VT    LSAC     +  G+
Sbjct: 508 KDEVTWNSMISSFSQNGEPQEALDLFRQMCMEG--IKYNNVTISSALSACASLPAIYYGK 565

Query: 434 RLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            +  ++    G I K++ +  S ++D+YA+ G++  A    E MP+K +E+   +++ A
Sbjct: 566 EIHGVIIK--GPI-KADIFAESALIDMYAKCGNMELALRVFEFMPDK-NEVSWNSIISA 620



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 244/534 (45%), Gaps = 44/534 (8%)

Query: 25  EKLLSLLKKCPSTKTVQ---QIHTQMLI-------NFIQKPNFLLIRIIDLKDFNYASLL 74
           ++LL+LL+ C S   +    QIH + ++       N +     LL   +  + F  A  +
Sbjct: 33  DRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 75  FHQISRP---NEYAFNVMIRGLTTAWQKYSHSLKLYYQMK----RLGLKPDNFTYPFVFI 127
           F  + R    +   +N +IRG T A     HSL + + +K         PD  T P+V  
Sbjct: 93  FSALPRAAAGSSLPWNWLIRGFTAAGH---HSLAVLFYVKMWTHPAAPSPDAHTLPYVVK 149

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SCA L A++ G  VH +    GL  D +V  +LI MY+  G L  AR  FD +  RD V 
Sbjct: 150 SCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVL 209

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN M+ GY K G    AV LF  MR     P+  TL   L  C    DL+ G  +    V
Sbjct: 210 WNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAV 269

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K  ++    + + L+ MY KC  L  A R+F+ +   D+VTWN MI+   QNGL +EA+ 
Sbjct: 270 KCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALG 329

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF  M  +G  PD +TL+ +L A   +  L  GK V  Y  +  +  D F          
Sbjct: 330 LFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYF 389

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            C  +  A  +++     + V  + +IS    NG + +AL +F  + ++    +PN VT 
Sbjct: 390 KCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQ--CIKPNAVTV 447

Query: 417 IGVLSACVHAGLVDEGRRL--FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
             VL AC     +  G+ +  + L ++  G   K    S ++D+YA+ G L  +     +
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEG---KCYVESALMDMYAKCGRLDLSHYIFSK 504

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE--IESSNSGNYVISSKIFA 526
           M  K DE+   +++ +  +       Q  + L  +  +E     N  ISS + A
Sbjct: 505 MSLK-DEVTWNSMISSFSQNGEP---QEALDLFRQMCMEGIKYNNVTISSALSA 554



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 204/396 (51%), Gaps = 22/396 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LL  L      K  +++H  ++ N +    FL+  ++D+    +D   A  L+      +
Sbjct: 349 LLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAID 408

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
               + +I G          +L+++  +    +KP+  T   V  +CA++ AL  G  +H
Sbjct: 409 VVIGSTVISGYVLNGMS-EKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIH 467

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V +   +   +V  +L+ MYA+CG+LD +  +F ++  +D V+WNSMIS +S+ G  +
Sbjct: 468 GYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQ 527

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA++LF +M  E    + +T+ S L +C  L  +  GK + G ++K  +  + +  SALI
Sbjct: 528 EALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALI 587

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG +  A RVF+ M +K+ V+WN++I+AY  +GL  E++   +RM+  G  PD +
Sbjct: 588 DMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHV 647

Query: 323 TLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVFED 370
           T + ++SACA  G ++ G  +      +Y     + H     D++   G +D A++   D
Sbjct: 648 TFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIAD 707

Query: 371 MPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKE 405
           MP   +   W A++ A     R H  + L +  S+E
Sbjct: 708 MPFKPDAGIWGALLHAC----RVHRNVELADIASQE 739


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 297/557 (53%), Gaps = 78/557 (14%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF +++  +  ++N MI         Y  +L L+ +M   G+ PD  T   +  +CA L 
Sbjct: 190 LFEKMTHRDVISWNTMISCYVLKGM-YREALDLFDEMLVSGVLPDEITMVSLVSTCAKLK 248

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-------------------- 173
            L  G  +H  +    L     + + L+ MY++CGK+D A                    
Sbjct: 249 DLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTL 308

Query: 174 -------------RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
                        R++FD++ ER LVSW +M+SGY + GY  E++ELF +MR E  +PDE
Sbjct: 309 VSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDE 368

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL--------- 271
           + LV+VL +C  L D  LG+ V  F+V   M ++ ++G+AL+D+Y KCG L         
Sbjct: 369 VALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQ 428

Query: 272 VP----------------------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           +P                      AR  F+ +  KD+V+WN M+ AY ++ L NE+  +F
Sbjct: 429 LPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIF 488

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M+ + V PDK TLI +LS+CA +GAL+ G WV+ Y  +  +  D             C
Sbjct: 489 CKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKC 548

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G ++ A ++F  +   N   W AM++A A  G+A EA+ L+  M + G   +P+ VTFI 
Sbjct: 549 GCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERG--VKPDHVTFIA 606

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L+AC H GLVDEG + F+ + S + +IP   HY CMVDL  R GHL E   F+ERMP +
Sbjct: 607 LLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIE 666

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D  +  +L+ AC+   N +++++  + L+EI+ +N+G +V+ S I+A+   WDD +K+R
Sbjct: 667 PDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVR 726

Query: 539 ALMREKGVSKTPGCSWI 555
             + E GV K PG + I
Sbjct: 727 TKLHETGVPKQPGFTMI 743



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 248/537 (46%), Gaps = 82/537 (15%)

Query: 21  SLLREK-LLSLLKKCPSTKTVQQIHTQMLI-NFIQKPNF---LLIRIIDLKDFNYASLLF 75
           S+LR   ++ LLK C + +    IH  ++  N I  P     +L  ++ + + + A  + 
Sbjct: 31  SVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQIL 90

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
                P    +N ++             L+ YY M   G+  D  T+ F+  +C     +
Sbjct: 91  SYSHEPESIIWNTLLENKLKEGCP-QEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDV 149

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  VH  + K G   +  ++++L+ +Y++CGKL    ++F+++  RD++SWN+MIS Y
Sbjct: 150 KLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCY 209

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
              G  +EA++LF  M     LPDEIT+VS++ +C  L DL +GK +  ++V NK+ +  
Sbjct: 210 VLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRG 269

Query: 256 YMGSALIDMYGKCGALVP---------------------------------ARRVFDAMV 282
            + + L+DMY KCG +                                   AR++FD M 
Sbjct: 270 SLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN 329

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            + +V+W  M++ Y Q G   E++ LF +M++  V PD++ L+ VLSAC  +   DLG+ 
Sbjct: 330 ERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRS 389

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           V  +    G+  D F           CG +D+AL+ FE +P  +  SWN+M+     +G 
Sbjct: 390 VHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGG 449

Query: 392 AHEALLLFERMSK-----------------------------EGGAARPNDVTFIGVLSA 422
             +A   F ++ +                             +    +P+  T I +LS+
Sbjct: 450 VDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSS 509

Query: 423 CVHAGLVDEGRRL-FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           C   G ++ G  +   +  +  G+   +   + ++D+Y + G +  A++   ++ EK
Sbjct: 510 CAKVGALNHGIWVNVYIEKNEIGI--DAMLGTALIDMYGKCGCVEMAYEIFTQIIEK 564



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 135/282 (47%), Gaps = 15/282 (5%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
            L   LL L  KC       +   Q+        N +L         + A   F++I   
Sbjct: 404 FLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEK 463

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++N M+         ++ S +++ +M+   +KPD  T   +  SCA + ALNHG+ V
Sbjct: 464 DIVSWNTMVNAYVKH-DLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWV 522

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           +  + K  +  D  +  +LI MY +CG ++ A ++F +I E+++  W +M++ Y+  G A
Sbjct: 523 NVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQA 582

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY----- 256
            EA++L+  M E    PD +T +++L +C   G LV     EG+   NK+  +FY     
Sbjct: 583 LEAIDLYLEMEERGVKPDHVTFIALLAACSH-GGLV----DEGYKYFNKLR-SFYNIIPT 636

Query: 257 --MGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
                 ++D+ G+ G L    +  + M +  DV  W++++ A
Sbjct: 637 IHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRA 678


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 308/560 (55%), Gaps = 40/560 (7%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQI 78
           L E+ L  L KC     ++++H Q++   +    ++  ++I         N A  +F+QI
Sbjct: 22  LFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQI 81

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
             PN + +N +IR    A  + S SLK    ++ M++ GL  DNFTYPF+  +C     L
Sbjct: 82  QDPNVHLYNTLIR----AHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWL 137

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL--DSARKVFDEIRERDLVSWNSMIS 193
                +H  V K G   D  V +SLI  Y++CG L  + A K+F E+ E+DLVSWNSMI 
Sbjct: 138 PTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIG 197

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-D 252
           G  K G    A +LF  M E     D ++  ++L      G +  G+  + F +  KM +
Sbjct: 198 GLVKAGDLGRARKLFDEMAER----DAVSWNTILD-----GYVKAGEMSQAFNLFEKMPE 248

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            N    S ++  Y K G +  AR +FD M  K++VTW  +I+ +A+ GL+ EA  L+N+M
Sbjct: 249 RNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQM 308

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR-----------HDIF--CG 359
           + AG+ PD  TLI +L+ACA  G L LGK V  +AS + +R            D++  CG
Sbjct: 309 EAAGLKPDDGTLISILAACAESGLLVLGKKV--HASIKKIRIKCSVNVSNALVDMYAKCG 366

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D AL +F +M + + VSWN M+  LA +G   +A+ LF +M +EG   +P+ VT I +
Sbjct: 367 RVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEG--FKPDKVTLIAI 424

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC HAG VD+G   F+ M    G++P  EHY CM+DL  R G L EA+  V+ MP + 
Sbjct: 425 LCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEP 484

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           ++++ G LLGAC+      ++++V+  L+ +E S+ GNY + S IFA    W+  A MR 
Sbjct: 485 NDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRL 544

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            M+  GV K  G S I +DD
Sbjct: 545 QMKSTGVQKPSGASSIELDD 564


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/536 (35%), Positives = 297/536 (55%), Gaps = 19/536 (3%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRGL 93
           K + Q++ Q++++ + K  FL+I+ I+      D NYA   F ++S P+   +N +I+G 
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
           T         +++Y  M+   + P+ FT+ +V  +C        G  +H   FK G   +
Sbjct: 61  TQK-NIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 119

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V +SL++MYA+ G++  AR VFD++ +R +VSW S+ISGY + G   EA+ +F  MR+
Sbjct: 120 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 179

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD I LVSV+ +  ++ DL  GK + G V K  ++    +  +L  MY K G +  
Sbjct: 180 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEV 239

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           AR  F+ M   +++ WNAMI+ YA NG   EAI LF  M    +  D IT+   + A A 
Sbjct: 240 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 299

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           +G+L+L +W+D Y S+   R D F           CGSI  A  VF+ +   + V W+ M
Sbjct: 300 VGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVM 359

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I     +G   EA+ L+  M + G    PND TFIG+L+AC ++GLV EG  LF LM   
Sbjct: 360 IMGYGLHGHGQEAICLYNEMKQAG--VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH 417

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
            G+ P  +HYSC+VDL  RAG+L++A+DF+  MP K    V GALL AC+  +   + + 
Sbjct: 418 -GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEI 476

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             + L  ++  N+G+YV  S ++A+  +W   A +R +M +KG++K  G S I I+
Sbjct: 477 AAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 196/380 (51%), Gaps = 24/380 (6%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLIN------FIQKPNFLLIRIIDLKDFNYASLLFHQ 77
            L +LK C  T      +QIH Q          F+Q  N L+         +YA ++F +
Sbjct: 88  FLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQ--NSLVSMYAKFGQISYARIVFDK 145

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +      ++  +I G          +L ++ +M++  +KPD      V  +  N+  L  
Sbjct: 146 LHDRTVVSWTSIISGYVQNGDPME-ALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 204

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G S+H  V K+GL+ +  +  SL TMYA+ G ++ AR  F+ + + +L+ WN+MISGY+ 
Sbjct: 205 GKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYAN 264

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            GY +EA++LF  M  +    D IT+ S + +   +G L L +W++G++ K++   + ++
Sbjct: 265 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFV 324

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + LIDMY KCG++  AR VFD + +KDVV W+ MI  Y  +G   EAI L+N MK AGV
Sbjct: 325 NTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGV 384

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGL--RHDIF---------CGSIDDALK 366
            P+  T IG+L+AC + G +  G  +       G+   H  +          G ++ A  
Sbjct: 385 CPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYD 444

Query: 367 VFEDMPVTNEVS-WNAMISA 385
               MP+   VS W A++SA
Sbjct: 445 FIMSMPIKPGVSVWGALLSA 464


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/536 (35%), Positives = 297/536 (55%), Gaps = 19/536 (3%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRGL 93
           K + Q++ Q++++ + K  FL+I+ I+      D NYA   F ++S P+   +N +I+G 
Sbjct: 16  KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 75

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
           T         +++Y  M+   + P+ FT+ +V  +C        G  +H   FK G   +
Sbjct: 76  TQK-NIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V +SL++MYA+ G++  AR VFD++ +R +VSW S+ISGY + G   EA+ +F  MR+
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 194

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD I LVSV+ +  ++ DL  GK + G V K  ++    +  +L  MY K G +  
Sbjct: 195 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEV 254

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           AR  F+ M   +++ WNAMI+ YA NG   EAI LF  M    +  D IT+   + A A 
Sbjct: 255 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 314

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           +G+L+L +W+D Y S+   R D F           CGSI  A  VF+ +   + V W+ M
Sbjct: 315 VGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVM 374

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I     +G   EA+ L+  M + G    PND TFIG+L+AC ++GLV EG  LF LM   
Sbjct: 375 IMGYGLHGHGQEAICLYNEMKQAG--VCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH 432

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
            G+ P  +HYSC+VDL  RAG+L++A+DF+  MP K    V GALL AC+  +   + + 
Sbjct: 433 -GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEI 491

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             + L  ++  N+G+YV  S ++A+  +W   A +R +M +KG++K  G S I I+
Sbjct: 492 AAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 547



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 196/380 (51%), Gaps = 24/380 (6%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLIN------FIQKPNFLLIRIIDLKDFNYASLLFHQ 77
            L +LK C  T      +QIH Q          F+Q  N L+         +YA ++F +
Sbjct: 103 FLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQ--NSLVSMYAKFGQISYARIVFDK 160

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +      ++  +I G          +L ++ +M++  +KPD      V  +  N+  L  
Sbjct: 161 LHDRTVVSWTSIISGYVQNGDPME-ALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 219

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G S+H  V K+GL+ +  +  SL TMYA+ G ++ AR  F+ + + +L+ WN+MISGY+ 
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYAN 279

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            GY +EA++LF  M  +    D IT+ S + +   +G L L +W++G++ K++   + ++
Sbjct: 280 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFV 339

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + LIDMY KCG++  AR VFD + +KDVV W+ MI  Y  +G   EAI L+N MK AGV
Sbjct: 340 NTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGV 399

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGL--RHDIF---------CGSIDDALK 366
            P+  T IG+L+AC + G +  G  +       G+   H  +          G ++ A  
Sbjct: 400 CPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYD 459

Query: 367 VFEDMPVTNEVS-WNAMISA 385
               MP+   VS W A++SA
Sbjct: 460 FIMSMPIKPGVSVWGALLSA 479


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/442 (39%), Positives = 261/442 (59%), Gaps = 13/442 (2%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA    L  G + H+ +  +GL  D   S+ LI MY++CG +D AR+VFDE+  R LVSW
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MI   ++ G   EA++L  +M+ E     E T+ SVL +C     L   + +  F +K
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             MDLN ++ +AL+D+Y KCG +  A  VF++M ++ VVTW++M   Y QN +  +A+ L
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F +    G+  D+  +  V+ ACA + A+  GK V+   S+ G   +IF           
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAK 313

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I+++ KVF D+   N V WNAMIS L+ + R+ E ++LFE+M + G    PNDVTF+
Sbjct: 314 CGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG--LSPNDVTFV 371

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VLSAC H GLV +G++ FDLM+    L P   HYSCMVD  +RAG + EA+D + ++P 
Sbjct: 372 SVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPF 431

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
                + G+LL +C+   N ++++   + L +IE  NSGNY++ S ++A    WD+ AKM
Sbjct: 432 NASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKM 491

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R L++E  V K  G SWI I D
Sbjct: 492 RKLLKESDVKKERGKSWIEIKD 513



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 209/400 (52%), Gaps = 17/400 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LK C   K + Q    H Q+L+  ++      N L+         ++A  +F ++   +
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N MI  LT   ++ + +L L  QM+R G     FT   V  +CA   AL+    +H
Sbjct: 130 LVSWNTMIGSLTQNGEE-NEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +   K  +D +  V+ +L+ +YA+CG +  A  VF+ + +R +V+W+SM +GY +    +
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A+ LF +  E     D+  + SV+ +C  L  ++ GK V   + K+    N ++ S+LI
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLI 308

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG +  + +VF  +  ++VV WNAMI+  +++  S E ++LF +M+  G++P+ +
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDV 368

Query: 323 TLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNE 376
           T + VLSAC  +G +  G K+ D    +  L  ++F       ++  A ++FE   + ++
Sbjct: 369 TFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 377 VSWNA---MISALAFNGRAHEALLLFERMSKEGGAARPND 413
           + +NA   M  +L  + R H  L L E  +K+     P++
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHN 468


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/500 (38%), Positives = 285/500 (57%), Gaps = 21/500 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGL---TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           LF Q+   N  ++  MI G    +  W+    ++KL+ +M RLG KPD F    V  SC 
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWE----AMKLFGEMNRLGWKPDGFACTSVLTSCG 342

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +  AL  G  VH+   K  L+ D+ V + LI MYA+   L  A+KVFD + E++++S+N+
Sbjct: 343 SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNA 402

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GYS      EA+ELF  MR   F P  +T VS+LG    L  L L K + G ++K  
Sbjct: 403 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFG 462

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ + GSALID+Y KC  +  AR VF+ M  KD+V WNAM   Y Q+  + EA+ L++
Sbjct: 463 VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYS 522

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            ++++   P++ T   +++A +++ +L  G+       + GL    F           CG
Sbjct: 523 TLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCG 582

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SI++A K+F      + V WN+MIS  A +G A EAL +F  M KEG   +PN VTF+ V
Sbjct: 583 SIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG--IQPNYVTFVAV 640

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC HAG V++G   F+ M   FG+ P +EHY+C+V L  R+G L EA +F+E+MP + 
Sbjct: 641 LSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEP 699

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
             IV  +LL AC+   N ++ +   ++ +  +  +SG+Y++ S IFA+  MW D  K+R 
Sbjct: 700 AAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRD 759

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            M    V K PG SWI +++
Sbjct: 760 RMDSSEVVKEPGRSWIEVNN 779



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 243/474 (51%), Gaps = 24/474 (5%)

Query: 43  IHTQMLINFIQKPNFL---LIRIIDLKD-FNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
           IH Q++++ +Q   FL   LI +    D  + A ++F ++   N   ++ M+   +   Q
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQ--Q 106

Query: 99  KYSH-SLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            YS  +L ++  ++R  G  P+ F    V  +C  L  +  G  +H  V + G D+D +V
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SLI  Y++ G ++ AR VFD++ E+  V+W ++I+GY+K G +  ++ELF +MRE   
Sbjct: 167 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           +PD   + SVL +C  L  L  GK +  +V++   +++  + + LID Y KC  +   R+
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +FD MV K++++W  MI+ Y QN    EA+ LF  M   G  PD      VL++C S  A
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 346

Query: 337 LDLGKWVDKYASQRGLRHDIFC--GSID---------DALKVFEDMPVTNEVSWNAMISA 385
           L+ G+ V  Y  +  L  D F   G ID         DA KVF+ M   N +S+NAMI  
Sbjct: 347 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 406

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            +   +  EAL LF  M        P+ +TF+ +L        ++  +++  L+   FG+
Sbjct: 407 YSSQEKLSEALELFHEMRVR--LFPPSLLTFVSLLGVSASLFALELSKQIHGLI-IKFGV 463

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL-LGACQKQKNTD 498
                  S ++D+Y++  ++ +A    E M EK D +V  A+  G  Q  +N +
Sbjct: 464 SLDLFAGSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQHLENEE 516



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 200/370 (54%), Gaps = 26/370 (7%)

Query: 130 ANLLALN-------HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           ANLL L+       H   +H  +   GL  D  +++ LI + ++  ++D+AR VFD++  
Sbjct: 31  ANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPH 90

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ++L++W+SM+S YS+ GY++EA+ +F  + R+    P+E  L SV+ +C  LG +  G  
Sbjct: 91  KNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 150

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + GFVV++  D + Y+G++LID Y K G +  AR VFD +  K  VTW  +I  Y + G 
Sbjct: 151 LHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGR 210

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           S  ++ LF +M+   V PD+  +  VLSAC+ +  L+ GK +  Y  +RG   D+     
Sbjct: 211 SAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNV 270

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  C  +    K+F+ M V N +SW  MIS    N    EA+ LF  M++ G   +
Sbjct: 271 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGW--K 328

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEA 468
           P+      VL++C     +++GR++    + +     +S+ +  + ++D+YA++  L +A
Sbjct: 329 PDGFACTSVLTSCGSREALEQGRQVH---AYTIKANLESDEFVKNGLIDMYAKSNLLIDA 385

Query: 469 WDFVERMPEK 478
               + M E+
Sbjct: 386 KKVFDVMAEQ 395


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/498 (34%), Positives = 284/498 (57%), Gaps = 16/498 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYY-QMKRLGLKPDNFTYPFVFISCANL 132
           +FH++   N  ++  +I GL  A   Y+    +Y+ +M R  ++ D++T+     +CA+ 
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRA--GYNKEALVYFSEMWRSRVEYDSYTFAIALKACADS 230

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            ALN+G  +H+   K G D    V+++L TMY +CGKL+    +F+++  RD+VSW ++I
Sbjct: 231 GALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTII 290

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +   +MG  + AV+ F RMRE +  P+E T  +V+  C +L  +  G+ +   ++   + 
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLA 350

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + ++++ MY KCG L  +  +F  M  +D+V+W+ +I  Y Q G  +EA  L + M
Sbjct: 351 ASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWM 410

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +  G  P +  L  VLSAC ++  L+ GK +  Y    GL H              CGSI
Sbjct: 411 RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSI 470

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           ++A ++F+     + VSW AMI+  A +G + E + LFE++ + G   RP+ VTFIGVLS
Sbjct: 471 EEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVG--LRPDSVTFIGVLS 528

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAGLVD G   F+ MS  + + P  EHY CM+DL  RAG LS+A   +E MP   D+
Sbjct: 529 ACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD 588

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
           +V   LL AC+   + +  +R  + +L++E + +G ++  + I+A+   W ++A +R LM
Sbjct: 589 VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLM 648

Query: 542 REKGVSKTPGCSWIGIDD 559
           + KGV K PG SWI + D
Sbjct: 649 KSKGVIKEPGWSWIKVKD 666



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 207/392 (52%), Gaps = 21/392 (5%)

Query: 31  LKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNE 83
           LK C  +  +   ++IH Q +       +F+   +  + +      Y   LF ++S  + 
Sbjct: 224 LKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDV 283

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
            ++  +I  L    Q+   +++ + +M+   + P+ +T+  V   CANL  +  G  +H+
Sbjct: 284 VSWTTIITTLVQMGQEEC-AVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHA 342

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            +  +GL     V +S++TMYA+CG+L S+  +F E+  RD+VSW+++I+GY + G+  E
Sbjct: 343 LILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSE 402

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A EL   MR E   P E  L SVL +CG++  L  GK +  +V+   ++    + SALI+
Sbjct: 403 AFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALIN 462

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG++  A R+FDA  N D+V+W AMI  YA++G S E I LF ++   G+ PD +T
Sbjct: 463 MYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVT 522

Query: 324 LIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIFC--GSIDDALKVFEDM 371
            IGVLSAC+  G +DLG         KY       H     D+ C  G + DA  + E M
Sbjct: 523 FIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAM 582

Query: 372 PV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
           P   ++V W+ ++ A   +G         ER+
Sbjct: 583 PFHRDDVVWSTLLRACRVHGDVERGRRTAERI 614



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 216/465 (46%), Gaps = 31/465 (6%)

Query: 31  LKKCPSTKTVQQIHTQML----------INFIQKP-----NFLLIRIIDLKDFNYASLLF 75
           L   P+  + + I  Q+L          I+FI +      N  L  ++       A  +F
Sbjct: 13  LFTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMF 72

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLA 134
            ++S+ +E ++  +I G   A    S +L L+  M+   GL+ D F       +C     
Sbjct: 73  DKMSQKDEISWTTLISGYVNA-NDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSD 131

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +N+G  +H    K GL     V  +L+ MY + GK+   R+VF E+  R++VSW ++I+G
Sbjct: 132 VNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITG 191

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
             + GY KEA+  F  M       D  T    L +C D G L  G+ +    +K   D++
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVS 251

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++ + L  MY KCG L     +F+ M  +DVV+W  +IT   Q G    A+  F RM+ 
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRE 311

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           + V+P++ T   V+S CA++  ++ G+ +       GL   +            CG +  
Sbjct: 312 SDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTS 371

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           +  +F +M   + VSW+ +I+     G   EA  L   M  EG   +P +     VLSAC
Sbjct: 372 SSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEG--PKPTEFALASVLSAC 429

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +  +++ G++L   +  S GL   +   S ++++Y + G + EA
Sbjct: 430 GNMAILEHGKQLHAYV-LSIGLEHTAMVLSALINMYCKCGSIEEA 473


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/495 (36%), Positives = 284/495 (57%), Gaps = 16/495 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR--LGLKPDNFTYPFVFISCAN 131
           LF ++   N  ++  MI G  +  +    + +L+  M+    G   + F +  V  +   
Sbjct: 173 LFDEMPERNAVSWATMISGYASQ-ELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTC 231

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
            + +N G  VHS   K GL     V+++L+TMY +CG L+ A K F+    ++ ++W++M
Sbjct: 232 YMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAM 291

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           ++G+++ G + +A++LF  M +   LP E TLV V+ +C D   +V G+ + G+ +K   
Sbjct: 292 VTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGY 351

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           +L  Y+ SAL+DMY KCG++V AR+ F+ +   DVV W ++IT Y QNG    A+ L+ +
Sbjct: 352 ELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGK 411

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGS 360
           M+  GV P+ +T+  VL AC+++ ALD GK +     +     +I            CGS
Sbjct: 412 MQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGS 471

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +DD  ++F  MP  + +SWNAMIS L+ NGR +E L LFE+M  EG   +P++VTF+ +L
Sbjct: 472 LDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEG--TKPDNVTFVNLL 529

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC H GLVD G   F +M   F + P  EHY+CMVD+ +RAG L EA +F+E       
Sbjct: 530 SACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHG 589

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             +   LL A +  ++ D+     + L+E+ S  S  YV+ S I+  L  W+D  ++R +
Sbjct: 590 LCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGM 649

Query: 541 MREKGVSKTPGCSWI 555
           M+ +GV+K PGCSWI
Sbjct: 650 MKARGVTKEPGCSWI 664



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/480 (30%), Positives = 241/480 (50%), Gaps = 33/480 (6%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           ++L  L  C   K +++   +H ++L+    +  Q  N L+        F+ A+L+F  I
Sbjct: 12  QVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSI 71

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-----GLKPDNFTYPFVFISCANLL 133
           +  +  ++N +I   +   Q ++ SL + +  ++L      + P+  T   VF + + L 
Sbjct: 72  NNKDVVSWNCLINAFSQQ-QAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLS 130

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G   H+   K     D   + SL+ MY + G +  AR +FDE+ ER+ VSW +MIS
Sbjct: 131 DSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMIS 190

Query: 194 GYSKMGYAKEAVELFGRMREEE--FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           GY+    A EA ELF  MR EE     +E    SVL +      +  G+ V    +KN +
Sbjct: 191 GYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGL 250

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
                + +AL+ MY KCG+L  A + F+   NK+ +TW+AM+T +AQ G S++A+ LF  
Sbjct: 251 VCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYD 310

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M  +G  P + TL+GV++AC+   A+  G+ +  Y+ + G    ++           CGS
Sbjct: 311 MHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGS 370

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I DA K FE +   + V W ++I+    NG    AL L+ +M  + G   PND+T   VL
Sbjct: 371 IVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKM--QLGGVIPNDLTMASVL 428

Query: 421 SACVHAGLVDEGRRLF-DLMSSSFGL-IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            AC +   +D+G+++   ++  +F L IP     S M   YA+ G L + +    RMP +
Sbjct: 429 KACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAM---YAKCGSLDDGYRIFWRMPAR 485



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHT----QMLINFIQKPNFLLIRIIDLKDFNYASL 73
           N+   +   +LS L       T +Q+H+      L+  +   N L+   +       A  
Sbjct: 216 NENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALK 275

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            F      N   ++ M+ G    +     +LKL+Y M + G  P  FT   V  +C++  
Sbjct: 276 TFELSGNKNSITWSAMVTGFAQ-FGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDAC 334

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           A+  G  +H    K+G +   +V  +L+ MYA+CG +  ARK F+ I++ D+V W S+I+
Sbjct: 335 AIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIIT 394

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY + G  + A+ L+G+M+    +P+++T+ SVL +C +L  L  GK +   ++K    L
Sbjct: 395 GYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSL 454

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              +GSAL  MY KCG+L    R+F  M  +DV++WNAMI+  +QNG  NE + LF +M 
Sbjct: 455 EIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMC 514

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWV 343
             G  PD +T + +LSAC+ +G +D G WV
Sbjct: 515 LEGTKPDNVTFVNLLSACSHMGLVDRG-WV 543


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 307/553 (55%), Gaps = 25/553 (4%)

Query: 27  LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQIS 79
           L ++L  C   P  +  +QIH  +L   ++    L+  +ID          A  LF+ + 
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N  ++  ++ G       +  +++L+  M + GLKPD +    +  SCA+L AL  G 
Sbjct: 312 NKNIISWTTLLSGYKQN-ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGT 370

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   K  L  D +V++SLI MYA+C  L  ARKVFD     D+V +N+MI GYS++G
Sbjct: 371 QVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG 430

Query: 200 YA---KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
                 EA+ +F  MR     P  +T VS+L +   L  L L K + G + K  ++L+ +
Sbjct: 431 TQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIF 490

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            GSALID+Y  C  L  +R VFD M  KD+V WN+M   Y Q   + EA+ LF  ++ + 
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
             PD+ T   +++A  ++ ++ LG+       +RGL  + +           CGS +DA 
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAH 610

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K F+     + V WN++IS+ A +G   +AL + E+M  EG    PN +TF+GVLSAC H
Sbjct: 611 KAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG--IEPNYITFVGVLSACSH 668

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AGLV++G + F+LM   FG+ P++EHY CMV L  RAG L++A + +E+MP K   IV  
Sbjct: 669 AGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWR 727

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           +LL  C K  N ++++   ++ +  +  +SG++ + S I+A+  MW ++ K+R  M+ +G
Sbjct: 728 SLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEG 787

Query: 546 VSKTPGCSWIGID 558
           V K PG SWIGI+
Sbjct: 788 VVKEPGRSWIGIN 800



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 249/531 (46%), Gaps = 29/531 (5%)

Query: 43  IHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
           +H Q+++  ++   +L   +I+L        YA  +F ++   N  +++ M+        
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHH-G 124

Query: 99  KYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGV--SVHSSVFKIGLDEDDH 155
            Y  SL ++ +  R     P+ +       +C+ L      +   + S + K G D D +
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVY 184

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V   LI  Y + G +D AR VFD + E+  V+W +MISG  KMG +  +++LF ++ E+ 
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
            +PD   L +VL +C  L  L  GK +   +++  ++++  + + LID Y KCG ++ A 
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           ++F+ M NK++++W  +++ Y QN L  EA+ LF  M   G+ PD      +L++CAS+ 
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLH 364

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI- 383
           AL  G  V  Y  +  L +D +           C  + DA KVF+     + V +NAMI 
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424

Query: 384 --SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
             S L      HEAL +F  M       RP+ +TF+ +L A      +   +++  LM  
Sbjct: 425 GYSRLGTQWELHEALNIFRDMRFR--LIRPSLLTFVSLLRASASLTSLGLSKQIHGLM-F 481

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL--GALLGACQKQKNTDV 499
            +GL       S ++D+Y+    L ++    + M  KV ++V+      G  Q+ +N + 
Sbjct: 482 KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM--KVKDLVIWNSMFAGYVQQSENEEA 539

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
               ++L L  E  +   +        NL       +    + ++G+   P
Sbjct: 540 LNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNP 590


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 293/549 (53%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +   +Q+H+ ++   I     +   ++DL     D   A  +F      
Sbjct: 319 SLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTE 378

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +NVM+          S S +++ QM+  GL P+ FTYP +  +C ++ AL+ G  +
Sbjct: 379 NVVLWNVMLVAFGK-LDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQI 437

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V K G   + +V   LI MYA+ GKLD+A  +   + E D+VSW ++ISGY++    
Sbjct: 438 HTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLF 497

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA++ F  M       D I   S + +C  +  L  G+ +      +    +  +G+AL
Sbjct: 498 AEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNAL 557

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + +Y +CG +  A   F+ +  KD ++WN +I+ +AQ+G   +A+ +F +M  A +    
Sbjct: 558 VSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASF 617

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T    +SA A+I  +  GK +     +RG   DI            CGSI+DA + F +
Sbjct: 618 FTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCE 677

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  N+VSWNAMI+  + +G  +EA+ LFE+M + G    PN VTF+GVLSAC H GLV 
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVG--EMPNHVTFVGVLSACSHVGLVT 735

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +G   F+ MS   GL+PK  HY+C+VDL +RAG LS A  F+E MP + D  +   LL A
Sbjct: 736 KGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSA 795

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C   KN +V +   Q LLE+E  +S  YV+ S ++A    WD   + R +MR +GV K P
Sbjct: 796 CTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEP 855

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 856 GRSWIEVKN 864



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/540 (25%), Positives = 263/540 (48%), Gaps = 31/540 (5%)

Query: 29  SLLKKCPSTKT----VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISR 80
           S+L+ C   +      +QIH +++ + +     +   +I L   N     A  +F  +  
Sbjct: 116 SVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCT 175

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +  ++  MI G +    +   ++ L+ +M   G+ P  + +  V   C  +   + G  
Sbjct: 176 KDSVSWVAMISGFSQNGYE-EEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQ 234

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+ VFK G   + +V ++L+T+Y+R     SA KVF +++ +D VS+NS+ISG ++ G+
Sbjct: 235 LHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGF 294

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           +  A+ELF +M+ +   PD +T+ S+L +C   G L  G+ +  +V+K  +  +  +  A
Sbjct: 295 SDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGA 354

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+D+Y  C  +  A  +F     ++VV WN M+ A+ +    +E+  +F +M+  G+ P+
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFE 369
           + T   +L  C S+GALDLG+ +     + G + +++            G +D A  +  
Sbjct: 415 QFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILR 474

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +   + VSW A+IS  A +    EAL  F+ M   G   + +++ F   +SAC     +
Sbjct: 475 TLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRG--IQSDNIGFSSAISACAGIQAL 532

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           ++GR++    S   G        + +V LYAR G + EA+   E++  K D I    L+ 
Sbjct: 533 NQGRQI-HAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLIS 590

Query: 490 ACQKQKNTDVSQRVMQLL----LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
              +    + + +V   +    LE      G+ V ++   AN+K      ++ A++ ++G
Sbjct: 591 GFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIK---QGKQIHAMIIKRG 647



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 200/409 (48%), Gaps = 18/409 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+  G+  +  TY ++   C N  +L     +H  + K+G   +  + + L+ +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           LD   KVF+++  R + SW+ +ISG+ +   +   ++LF  M EE   P EI+  SVL +
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 230 C-GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           C G    +   + +   ++ + +  +  + + LI +Y K G ++ AR+VFD +  KD V+
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           W AMI+ ++QNG   EAI LF  M  AG+ P       VLS C  I   D+G+ +     
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 349 QRGLRHDIF-CGSI----------DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + G   + + C ++            A KVF  M   +EVS+N++IS LA  G +  AL 
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF +M ++    +P+ VT   +LSAC   G + +G +L   +  + G+         ++D
Sbjct: 301 LFTKMKRD--YLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLD 357

Query: 458 LYARAGHLSEAWD-FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
           LY     +  A + F+    E V  ++   +L A  K  N   S R+ +
Sbjct: 358 LYVNCSDIKTAHEMFLTAQTENV--VLWNVMLVAFGKLDNLSESFRIFR 404


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 291/526 (55%), Gaps = 47/526 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFVFISCAN 131
           LF  +++ +  ++N +I G +     ++ +++LY+ + R G  ++P   T   + ++ + 
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGG-GAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASA 152

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI----------- 180
           L     G   H  + ++G   +  V   L+ MYA+ G +  A++VFDE+           
Sbjct: 153 LGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 181 --------------------RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
                                +RD ++W +M++G+++ G   +A+  F RMR +    D+
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQ 272

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T  S+L +CG L  L  GK +  ++++   D N ++GSAL+DMY KC ++ PA   F  
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRR 332

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  K++++W A+I  Y QNG S EA+ +F+ M+  G++PD  TL  V+S+CA++ +L+ G
Sbjct: 333 MSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEG 392

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
                 A   GL H I            CGSI+DA ++F++M   ++VSW A+++  A  
Sbjct: 393 AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQF 452

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           GRA E + LFE+M  +    +P+ VTFIGVLSAC  AG V++G   F  M    G++P  
Sbjct: 453 GRAKETIDLFEKMLAKD--VKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPID 510

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           +HY+CM+DLY+R+G L EA +F+++MP   D I  G LL AC+ + + ++ Q   + LLE
Sbjct: 511 DHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLE 570

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           I+  N  +YV+   + A    W+  A++R  MR++ V K PGCSWI
Sbjct: 571 IDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWI 616


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 199/553 (35%), Positives = 306/553 (55%), Gaps = 25/553 (4%)

Query: 27  LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQIS 79
           L ++L  C   P  +  +QIH  +L    +K   L+  +ID          A  LF  + 
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMP 311

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N  ++  ++ G       +  +++L+  M + GLKPD F    +  SCA+L AL  G 
Sbjct: 312 NKNIISWTTLLSGYKQN-SLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGT 370

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   K  L  D +V++SLI MYA+C  L  ARKVFD     D+V +N+MI GYS++G
Sbjct: 371 QVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLG 430

Query: 200 YAKE---AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
              E   A+ +F  MR     P  +T VS+L +   L  L L K + G + K  ++L+ +
Sbjct: 431 TQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIF 490

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            GSALI +Y  C  L  +R VFD M  KD+V WN+M + Y Q   + EA+ LF  ++ + 
Sbjct: 491 AGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSR 550

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
             PD+ T + +++A  ++ +L LG+       +RGL  + +           CGS +DA 
Sbjct: 551 DRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAH 610

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K F+     + V WN++IS+ A +G   +AL + E+M  EG    PN +TF+GVLSAC H
Sbjct: 611 KAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEG--IEPNYITFVGVLSACSH 668

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AGLV++G + F+LM   FG+ P++EHY CMV L  RAG L+EA + +E+MP K   IV  
Sbjct: 669 AGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWR 727

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           +LL  C K  N ++++   ++ +  +  +SG++ + S I+A+  MW D+ K+R  M+ +G
Sbjct: 728 SLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEG 787

Query: 546 VSKTPGCSWIGID 558
           V K PG SWI I+
Sbjct: 788 VVKEPGRSWIEIN 800



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/568 (25%), Positives = 254/568 (44%), Gaps = 45/568 (7%)

Query: 6   KAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           + ++R L    L+DP L                    +H Q++++ ++   +L   +++L
Sbjct: 45  REFARLLQLRALDDPLLYH----------------NVVHGQIIVSGLELDTYLSNILMNL 88

Query: 66  KD----FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNF 120
                   YA  +F ++   N   ++ M+         Y  SL ++    R     P+ +
Sbjct: 89  YSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHH-GFYEESLVVFLDFWRTRKNSPNEY 147

Query: 121 TYPFVFISCANLLALNHGV--SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
                  +C+ L      +   + S + K   D D +V   LI  Y + G +D AR VFD
Sbjct: 148 ILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFD 207

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            + E+  V+W +MISG  KMG +  +++LF ++ E   +PD   L +VL +C  L  L  
Sbjct: 208 ALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEG 267

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           GK +   +++   + +  + + LID Y KCG +  A ++FD M NK++++W  +++ Y Q
Sbjct: 268 GKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQ 327

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           N L  EA+ LF  M   G+ PD      +L++CAS+ AL+ G  V  Y  +  L +D + 
Sbjct: 328 NSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYV 387

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMI---SALAFNGRAHEALLLFERMSK 404
                     C  + +A KVF+     + V +NAMI   S L      H+AL +F  M  
Sbjct: 388 TNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRF 447

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
                RP+ +TF+ +L A      +   +++  LM   FGL       S ++ +Y+    
Sbjct: 448 R--LIRPSLLTFVSLLRASASLTSLGLSKQIHGLM-FKFGLNLDIFAGSALIAVYSNCYC 504

Query: 465 LSEAWDFVERMPEKVDEIVL--GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           L ++    + M  KV ++V+      G  Q+ +N +     ++L L  +  +   +V   
Sbjct: 505 LKDSRLVFDEM--KVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMV 562

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTP 550
               NL       +    + ++G+   P
Sbjct: 563 TAAGNLASLQLGQEFHCQLLKRGLECNP 590


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 212/636 (33%), Positives = 318/636 (50%), Gaps = 95/636 (14%)

Query: 8   YSRHLAFTELNDPSLLRE-KLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII 63
           + R ++    ++P+LL   +L  LL+ C ++K +   +Q+H  +++  +    F+L +++
Sbjct: 6   FKRAISSLPTSNPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLV 65

Query: 64  ----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
               D  D   A  LF ++S+PN +A+  ++ G  +        ++ Y +MK  G+ PD 
Sbjct: 66  QMYADCGDLGSAQALFDKLSQPNVFAWTAIL-GFYSRNGLSDECVRTYSEMKLKGVLPDK 124

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           + +P VF +C  LL L  G+ VH  V   G + D  V +SLI MY++ G + S R+VFDE
Sbjct: 125 YVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDE 184

Query: 180 IRERDLVSWNSMISGY-----------------------------------SKMGYAKEA 204
           + ERD++SWNSMISGY                                    +MG   EA
Sbjct: 185 MVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEA 244

Query: 205 VELFGRMREEEFL--------------------------------PDEITLVSVLGSCGD 232
            E+F +++E   +                                PD  +L SVL SC  
Sbjct: 245 WEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRH 304

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFY--MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
           LG LV G+ + G+ +++    +FY   G+AL+ MY KC  +  A  VF+ M   DVVTWN
Sbjct: 305 LGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWN 364

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           AMI  +    + + A+  F++M+ +G+  ++IT+  VL AC     L  GK V  Y ++ 
Sbjct: 365 AMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACD----LKSGKQVHAYITKN 420

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
                I            CG I  A  +F +M   + VSWN MI     +G    AL L 
Sbjct: 421 SFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLL 480

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
             MS       PN VTF   LSAC H+GLVDEG  LF  M+  FG  P  EH+SC+VDL 
Sbjct: 481 RDMSHSD--VCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLL 538

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
           ARA  L +A  F+E+MP K  + +  ALL AC+ Q+N  V++   + L ++E  ++GNYV
Sbjct: 539 ARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYV 598

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             S I+A    WDD+  +R LM ++G+ K  G SWI
Sbjct: 599 TLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 634


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 190/521 (36%), Positives = 304/521 (58%), Gaps = 28/521 (5%)

Query: 45  TQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI-SRPNEYAFNVMIRGLTTAWQKYSHS 103
           +  LIN   K     I ++DL +      +F ++ S  N   + VMI     +      +
Sbjct: 387 SSALINMYSK-----IGVVDLSE-----RVFREMESTKNLAMWAVMISAFAQSGST-GRA 435

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           ++L+ +M + GL+PD F    V +S  + L+L  G  +H  + KIGL  D  V  SL TM
Sbjct: 436 VELFQRMLQEGLRPDKFCSSSV-LSIIDSLSL--GRLIHCYILKIGLFTDISVGSSLFTM 492

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y++CG L+ +  VF+++ ++D VSW SMI+G+S+  +A++AV+LF  M  EE  PD++TL
Sbjct: 493 YSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTL 552

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
            + L +C  L  L  GK V G+ ++ ++     +G AL++MY KCGA+V ARRVFD +  
Sbjct: 553 TAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQ 612

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           KD  + +++++ YAQNG   +A++LF+ ++ A +  D  T+  V+ A A + +LD+G  +
Sbjct: 613 KDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQL 672

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
               ++ GL  ++            CGSID+  KVFE +   + +SW AMI + A +G+ 
Sbjct: 673 HACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKG 732

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EAL +++ M KEG   +P+ VTF+GVLSAC H G+V+EG    + M+  +G+ P   HY
Sbjct: 733 AEALKVYDLMRKEG--TKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHY 790

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +CMVDL  R+G L EA  F+  MP + D ++ G LL AC+   + ++ +   + ++E+E 
Sbjct: 791 ACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEP 850

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             +G YV  S I A++  W+D  K+R+LM   GV K PG S
Sbjct: 851 CEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 215/452 (47%), Gaps = 19/452 (4%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           +A  LF +   PN  ++N++I G    +  +  S + + +M+  G  P+ FTY  V  +C
Sbjct: 99  HALRLFDKTPHPNVISWNILISGCNQNFS-FEDSWRNFCKMRFSGFDPNQFTYGSVLSAC 157

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
             L +  +G  V+S   K G   + +V   +I ++A+    + A +VF ++   ++V WN
Sbjct: 158 TALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWN 217

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++ISG  K      A++LF +M    F+P+  T  S+L +C  L +L  G+ V+G+V+K 
Sbjct: 218 AIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKC 277

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               + ++G+A+ID+Y KC  +  A + F  M  ++VV+W  +I+ + Q   S  A   F
Sbjct: 278 GAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFF 337

Query: 310 NRMKYAGVNPDKITLIGVLSACASI----GALDLGKWV-------DKYASQRGLRHDIFC 358
             M+  G   +  T+  VL+AC        A+ L  W+       D   S   +      
Sbjct: 338 KEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKI 397

Query: 359 GSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           G +D + +VF +M  T  ++ W  MISA A +G    A+ LF+RM +EG   RP+     
Sbjct: 398 GVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEG--LRPDKFCSS 455

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VLS      L     RL        GL       S +  +Y++ G L E++   E+MP+
Sbjct: 456 SVLSIIDSLSL----GRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPD 511

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           K +      + G  +        Q   ++LLE
Sbjct: 512 KDNVSWASMITGFSEHDHAEQAVQLFREMLLE 543



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 190/385 (49%), Gaps = 27/385 (7%)

Query: 141 VHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +H+   K   L  +  +++SL+  Y +   +  A ++FD+    +++SWN +ISG ++  
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNF 126

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +++   F +MR   F P++ T  SVL +C  LG  + G+ V    +KN    N Y+ +
Sbjct: 127 SFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRA 186

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            +ID++ K  +   A RVF  ++ ++VV WNA+I+   +N  +  A+ LF +M      P
Sbjct: 187 GMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMP 246

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVF 368
           +  T   +L+ACA++  L+ G+ V  +  + G   D+F G+           +D A+K F
Sbjct: 247 NSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEF 306

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             MP+ N VSW  +IS       +  A   F+ M K G   + N+ T   VL+AC    +
Sbjct: 307 LRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVG--EKINNYTITSVLTACTEPVM 364

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE------- 481
           + E  +L   +  + G    S   S ++++Y++ G +    D  ER+  +++        
Sbjct: 365 IKEAVQLHSWIFKT-GFYLDSNVSSALINMYSKIGVV----DLSERVFREMESTKNLAMW 419

Query: 482 -IVLGALLGACQKQKNTDVSQRVMQ 505
            +++ A   +    +  ++ QR++Q
Sbjct: 420 AVMISAFAQSGSTGRAVELFQRMLQ 444


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 278/496 (56%), Gaps = 14/496 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  I   N  ++  +I G       +  + +L+  M+R     D F Y  V  +  
Sbjct: 167 ARKVFDTIPERNTVSWATIISGYAMERMAF-EAWELFXLMRREEGAHDKFIYTSVLSALT 225

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               +++G  +H    K GL     V ++L+TMY +CG LD A K F+   ++D ++W++
Sbjct: 226 VPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSA 285

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+GY++ G + EA+ LF  M      P E T V V+ +C D+G L  GK + G+ +K  
Sbjct: 286 MITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            +   Y  +AL+DMY KCG+LV AR+ FD +   D+V W +MI+ YAQNG +  A+ L+ 
Sbjct: 346 YECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYC 405

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCG 359
           RM+   + P ++T+  VL AC+S+ AL+ GK +     + G   ++            CG
Sbjct: 406 RMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCG 465

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S++D   VF  MP  + ++WNAMIS L+ NG   +AL LFE +    G  +P+ VTF+ V
Sbjct: 466 SLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRH--GTTKPDYVTFVNV 523

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H GLV+ G+  F +M   FG++P+ EHY+CMVD+ +RAG L E  +F+E      
Sbjct: 524 LSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDH 583

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
              +   LLGAC+  +N ++     + L+E+ S  S  Y++ S I+  L   DD  ++R 
Sbjct: 584 GMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRR 643

Query: 540 LMREKGVSKTPGCSWI 555
           LM+ +GV+K PGCSWI
Sbjct: 644 LMKLRGVNKEPGCSWI 659



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 240/472 (50%), Gaps = 24/472 (5%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
            + LL +C   K +Q+   IH Q+L        +L   +++L         A L+F  I+
Sbjct: 13  FVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESIT 72

Query: 80  RPNEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
             +  ++N +I G +      YS  ++L+ +M+     P+  T+  VF + ++      G
Sbjct: 73  NKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGG 132

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           +  H+   K     D  V  SLI MY + G +  ARKVFD I ER+ VSW ++ISGY+  
Sbjct: 133 LQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAME 192

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV-LGKWVEGFVVKNKMDLNFYM 257
             A EA ELF  MR EE   D+    SVL S   + DLV  GK +    +KN +     +
Sbjct: 193 RMAFEAWELFXLMRREEGAHDKFIYTSVL-SALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+ MYGKCG L  A + F+   +KD +TW+AMIT YAQ G S+EA+ LF  M   G 
Sbjct: 252 GNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P + T +GV++AC+ IGAL+ GK +  Y+ + G    I+           CGS+ DA K
Sbjct: 312 KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARK 371

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
            F+ +   + V W +MIS  A NG    AL L+ RM  E     P+++T   VL AC   
Sbjct: 372 GFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQME--RIMPHELTMASVLRACSSL 429

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +++G+++    +  +G   +    S +  +YA+ G L +      RMP +
Sbjct: 430 AALEQGKQI-HAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSR 480



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 192/367 (52%), Gaps = 16/367 (4%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L P + ++  + + C     L  G ++H+ + + G     ++++SL+ +YA+CG +  A+
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEA--VELFGRMREEEFLPDEITLVSVLGSCGD 232
            VF+ I  +D+VSWN +I+GYS+ G    +  +ELF RMR E  LP+  T   V  +   
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
             +   G       +K     + ++GS+LI+MY K G ++ AR+VFD +  ++ V+W  +
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I+ YA   ++ EA  LF  M+      DK     VLSA      +  GK +   A + GL
Sbjct: 186 ISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
                           CG +DDALK FE     ++++W+AMI+  A  G +HEAL LF  
Sbjct: 246 LSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYN 305

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M   G   +P++ TF+GV++AC   G ++EG+++    S   G   +    + +VD+YA+
Sbjct: 306 MHLNGN--KPSEFTFVGVINACSDIGALEEGKQIHGY-SLKAGYECQIYFMTALVDMYAK 362

Query: 462 AGHLSEA 468
            G L +A
Sbjct: 363 CGSLVDA 369


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 305/560 (54%), Gaps = 29/560 (5%)

Query: 13  AFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYAS 72
           A + L D  L R+    +LK   S      I    LI+   K N     IID  D     
Sbjct: 173 ACSSLGDIGLGRQLHAHVLK---SEFGAHIIAQNALISMYTKSNL----IIDALD----- 220

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCAN 131
            +F +++  +  ++  MI G +    +   +L  + +M   G+  P+ F +  VF +C++
Sbjct: 221 -VFSRMATRDLISWGSMIAGFSQLGYELE-ALCYFKEMLHQGVYLPNEFIFGSVFSACSS 278

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           LL   +G  +H    K GL  D     SL  MYA+CG L  AR VF +I   DLV+WN++
Sbjct: 279 LLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAI 338

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+G++  G AKEA+  F +MR +  +PDEIT+ S+L +C    +L  G  V G++ K  +
Sbjct: 339 IAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGL 398

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           DL+  + + L+ MY KC  L  A   F+ M  N D+V+WNA++TA  ++  + E   L  
Sbjct: 399 DLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLK 458

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M  +   PD ITL  VL A A   ++++G  V  YA + GL  D             CG
Sbjct: 459 LMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCG 518

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+  A K+F+ M   + VSW+++I   A  G   EAL LF+ M +     +PN VTF+GV
Sbjct: 519 SLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLD--VKPNHVTFVGV 576

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC H GLV+EG +L+  M   FG+ P  EH SCMVDL ARAG L+EA  F+ +M    
Sbjct: 577 LTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDP 636

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D +V   LL AC+   N DV +R  + +L+I+ SNS  +V+   I+A+   W+D A++R+
Sbjct: 637 DIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRS 696

Query: 540 LMREKGVSKTPGCSWIGIDD 559
           LM+++GV K PG SWI + D
Sbjct: 697 LMKQRGVRKVPGQSWIEVKD 716



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 219/421 (52%), Gaps = 16/421 (3%)

Query: 100 YSHSLKLY-YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           ++ ++K + +  K+ G      TY ++  +C+ L +L HG  +H  + K     D  + +
Sbjct: 43  FNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQN 102

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            ++ MY +C  L  A+KVFD + ER++VSW S+I+GYS+ G    A+E + +M +   +P
Sbjct: 103 HILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMP 162

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D+ T  S++ +C  LGD+ LG+ +   V+K++   +    +ALI MY K   ++ A  VF
Sbjct: 163 DQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVF 222

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN-PDKITLIGVLSACASIGAL 337
             M  +D+++W +MI  ++Q G   EA+  F  M + GV  P++     V SAC+S+   
Sbjct: 223 SRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQP 282

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           + G+ +   + + GL  D+F           CG +  A  VF  +   + V+WNA+I+  
Sbjct: 283 EYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGF 342

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A+ G A EA+  F +M  +G    P+++T   +L AC     + +G ++   + +  GL 
Sbjct: 343 AYGGDAKEAIAFFSQMRHQG--LIPDEITVRSLLCACTSPSELYQGMQVHGYI-NKMGLD 399

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
                 + ++ +YA+   L +A  F E M    D +   A+L AC +    +   R+++L
Sbjct: 400 LDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKL 459

Query: 507 L 507
           +
Sbjct: 460 M 460


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 318/595 (53%), Gaps = 61/595 (10%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR- 80
           ++   LLSLL+ C S + + Q+H  + +  +    F   R++     +    L H  +  
Sbjct: 33  VVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAIL 92

Query: 81  ------PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
                 PN Y    M+RG   A +  + +L L+ ++ R  L  D  T+ F   + A    
Sbjct: 93  ARASPGPNAYMLGTMMRGFLRA-RLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAE 151

Query: 135 LNHG------VSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
             HG       ++H +  K G + E   V ++L+  YA    LD A KVFDE+ ERD+VS
Sbjct: 152 SEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVS 211

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           W +++ GY++ G A EA  LF RM     + P+ +TLV+ + + G +G L  G  +  +V
Sbjct: 212 WTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYV 271

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG------ 300
            +  +  +  + +AL+DM+GKCG +  AR VFD M  KDV +W +M+ AYA+ G      
Sbjct: 272 TEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAE 331

Query: 301 -------------------------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
                                       EA+ LF  M  AGV+P   TL+ VLSACA +G
Sbjct: 332 QLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLG 391

Query: 336 ALDLGKWV-DKY--ASQRGLRH-------DIF--CGSIDDALKVFEDMPVTNEVSWNAMI 383
            LDLG+W+ + Y  +++ GL         D+F  CG + +A K+F++M   N VSWN MI
Sbjct: 392 CLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMI 451

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
            A A +G++ EA+ LFE++  E     P+ +TF+G+L++C H+GLV EGRR F  M   +
Sbjct: 452 MAHAVHGQSEEAIRLFEQLKGEN--IVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFY 509

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
            + P+ EHY+CM+DL  + G L EA++    MP + DE   GALL AC+   N ++   V
Sbjct: 510 RIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACV 569

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              L+E++ S+SG YV+ S+I+A+   WD    +R  MR++GV K PGCS I ++
Sbjct: 570 ADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVE 624


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 291/502 (57%), Gaps = 13/502 (2%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F+ AS LF  +SR +   +N MI G   +      SL  +Y+M   G+ PD  T+  +  
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGL-MEESLTFFYEMISSGVLPDAITFSSLLP 348

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           S +    L +   +H  + +  +  D  ++ +LI  Y +C  +  A+ +F +    D+V 
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           + +MISGY   G   +++E+F  + + +  P+EITLVS+L   G L  L LG+ + GF++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFII 468

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K   D    +G A+IDMY KCG +  A  +F+ +  +D+V+WN+MIT  AQ+   + AI 
Sbjct: 469 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAID 528

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           +F +M  +G+  D +++   LSACA++ +   GK +  +  +  L  D++          
Sbjct: 529 IFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYA 588

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG++  A+ VF+ M   N VSWN++I+A   +G+  ++L LF  M ++ G  RP+ +TF
Sbjct: 589 KCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG-IRPDQITF 647

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + ++S+C H G VDEG R F  M+  +G+ P+ EHY+C+VDL+ RAG L+EA++ V+ MP
Sbjct: 648 LEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMP 707

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
              D  V G LLGAC+  KN ++++     L++++ SNSG YV+ S   AN + W+   K
Sbjct: 708 FPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTK 767

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R+LM+E+ V K PG SWI I+
Sbjct: 768 VRSLMKEREVQKIPGYSWIEIN 789



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/494 (26%), Positives = 233/494 (47%), Gaps = 25/494 (5%)

Query: 23  LREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
           +  +L  LL+ C +   +   +Q+H  +++N I   ++   RI+ +      F+    +F
Sbjct: 34  IPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMF 93

Query: 76  HQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +++   R +   +N +I          + +L  Y++M   G+ PD  T+P +  +C  L 
Sbjct: 94  YRLDLRRSSIRPWNSIISSFVRNGL-LNQALAFYFKMLCFGVSPDVSTFPCLVKACVALK 152

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
                  +  +V  +G+D ++ V+ SLI  Y   GK+D   K+FD + ++D V WN M++
Sbjct: 153 NFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLN 212

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+K G     ++ F  MR ++  P+ +T   VL  C     + LG  + G VV + +D 
Sbjct: 213 GYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDF 272

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + ++L+ MY KCG    A ++F  M   D VTWN MI+ Y Q+GL  E++  F  M 
Sbjct: 273 EGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMI 332

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +GV PD IT   +L + +    L+  K +  Y  +  +  DIF           C  + 
Sbjct: 333 SSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVS 392

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  +F      + V + AMIS    NG   ++L +F  + K      PN++T + +L  
Sbjct: 393 MAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKV--KISPNEITLVSILPV 450

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
                 +  GR L   +    G   +      ++D+YA+ G ++ A++  ER+ ++ D +
Sbjct: 451 IGILLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKR-DIV 508

Query: 483 VLGALLGACQKQKN 496
              +++  C +  N
Sbjct: 509 SWNSMITRCAQSDN 522


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 178/466 (38%), Positives = 259/466 (55%), Gaps = 18/466 (3%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           H+L+L+  +      P + T+P    S + L   L  G  +H+   K+    + HV  SL
Sbjct: 104 HALRLHCLLP----NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSL 159

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           +T+YARCG L  A++VFDE+     VSW ++I+ Y   G  +EAV +          PD 
Sbjct: 160 LTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 219

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T V VL +C  + DL  G+ V     +  +  + ++ +A +D+Y KCG +  AR VFD 
Sbjct: 220 FTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK 279

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M +KD V W AM+  YA NG   EA+ LF  M+  GV PD   + G LSAC  +GALDLG
Sbjct: 280 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339

Query: 341 KWV------DKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           +        D++     L   +      CGS  +A  VF+ M   + + WNAMI  L   
Sbjct: 340 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 399

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G    A  L  +M K G   + ND TFIG+L +C H GL+ +GRR F  M+  + + P+ 
Sbjct: 400 GHEKTAFTLIGQMEKSG--VKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRI 457

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY C+VDL +RAG L EA   ++ MP   + ++LGALLG C+  +N ++++ V+  L+ 
Sbjct: 458 EHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR 517

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +E  NSGNYV+ S I++N   W+D+AK+R  M+EKGV K P CSW+
Sbjct: 518 LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWV 563


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 178/466 (38%), Positives = 259/466 (55%), Gaps = 18/466 (3%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           H+L+L+  +      P + T+P    S + L   L  G  +H+   K+    + HV  SL
Sbjct: 57  HALRLHCLLP----NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSL 112

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           +T+YARCG L  A++VFDE+     VSW ++I+ Y   G  +EAV +          PD 
Sbjct: 113 LTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 172

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T V VL +C  + DL  G+ V     +  +  + ++ +A +D+Y KCG +  AR VFD 
Sbjct: 173 FTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK 232

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M +KD V W AM+  YA NG   EA+ LF  M+  GV PD   + G LSAC  +GALDLG
Sbjct: 233 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292

Query: 341 KWV------DKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           +        D++     L   +      CGS  +A  VF+ M   + + WNAMI  L   
Sbjct: 293 RQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMT 352

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G    A  L  +M K G   + ND TFIG+L +C H GL+ +GRR F  M+  + + P+ 
Sbjct: 353 GHEKTAFTLIGQMEKSG--VKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRI 410

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY C+VDL +RAG L EA   ++ MP   + ++LGALLG C+  +N ++++ V+  L+ 
Sbjct: 411 EHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR 470

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +E  NSGNYV+ S I++N   W+D+AK+R  M+EKGV K P CSW+
Sbjct: 471 LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWV 516


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/442 (39%), Positives = 261/442 (59%), Gaps = 13/442 (2%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA    L  G + H+ +  +GL  D   S+ LI MY++CG +D AR+VFDE+  R LVSW
Sbjct: 74  CAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSW 133

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MI   ++ G   EA++L  +M+ E     E T+ SVL +C     L   + +  F +K
Sbjct: 134 NTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             MDLN ++ +AL+D+Y KCG +  A  VF++M ++ VVTW++M   Y QN +  +A+ L
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F +    G+  D+  +  V+ ACA + A+  GK ++   S+ G   +IF           
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAK 313

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I+++ KVF D+   N V WNAMIS L+ + R+ E ++LFE+M + G    PNDVTF+
Sbjct: 314 CGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMG--LSPNDVTFV 371

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VLSAC H GLV +G++ FDLM+    L P   HYSCMVD  +RAG + EA+D + ++P 
Sbjct: 372 SVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPF 431

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
                + G+LL +C+   N ++++   + L +IE  NSGNY++ S ++A    WD+ AKM
Sbjct: 432 NASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKM 491

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R L++E  V K  G SWI I D
Sbjct: 492 RKLLKESDVKKERGKSWIEIKD 513



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 209/400 (52%), Gaps = 17/400 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LK C   K + Q    H Q+L+  ++      N L+         ++A  +F ++   +
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N MI  LT   ++ + +L L  QM+R G     FT   V  +CA   AL+    +H
Sbjct: 130 LVSWNTMIGSLTQNGEE-NEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +   K  +D +  V+ +L+ +YA+CG +  A  VF+ + +R +V+W+SM +GY +    +
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A+ LF +  E     D+  + SV+ +C  L  ++ GK +   + K+    N ++ S+LI
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLI 308

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG +  + +VF  +  ++VV WNAMI+  +++  S E ++LF +M+  G++P+ +
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDV 368

Query: 323 TLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNE 376
           T + VLSAC  +G +  G K+ D    +  L  ++F       ++  A ++FE   + ++
Sbjct: 369 TFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 377 VSWNA---MISALAFNGRAHEALLLFERMSKEGGAARPND 413
           + +NA   M  +L  + R H  L L E  +K+     P++
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHN 468


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 303/549 (55%), Gaps = 25/549 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDLKDFNYASL------LFHQ 77
           L ++LK C ++K ++Q   IH+ ++    +   F+   ++D+  ++   L      +F  
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM--YSKCGLAIDAIGVFKT 374

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I +P+   ++ +I  L    Q    S+KL++ M+     P+ +T   +  +  N   L +
Sbjct: 375 IKKPDIVVWSALITCLDQQGQS-EESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQY 433

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G S+H+ V+K G + D  VS++L+TMY + G +    K+++ + +RDL+SWN+ +SG   
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G     + +F  M EE F+P+  T +S+LGSC  L D+  G+ V   ++KN++D N ++
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +ALIDMY KC  L  A   F+ +  +D+ TW  +IT YAQ     +A+  F +M+  GV
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P++ TL G LS C+S+ +L+ G+ +     + G   D+F           CG +++A  
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEA 673

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +FE +   + ++WN +I   A NG+ ++AL  F  M  EG    P+ VTF G+LSAC H 
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG--ISPDGVTFTGILSACSHQ 731

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV+EG+  F+ M   FG+ P  +H +CMVD+  R G   E  DF+++M    + ++   
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           +LGA +   N  + ++    L E++     +Y++ S IFA    WDD  ++R+LM  KGV
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 547 SKTPGCSWI 555
            K PGCSW+
Sbjct: 852 KKEPGCSWV 860



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 240/458 (52%), Gaps = 22/458 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L++C S +++   + IH  ++ + I   + L + ++++    +   YA L+  ++   
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I+GL  A    + S+ L+ +M+  G+ P+ FT      +C+  +AL+ G  +
Sbjct: 177 DVVSWTALIQGLV-AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+  FK+GL  D  V  +L+ +YA+CG+++ A K+F  + E++ V+WN +++GY++ G  
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
              ++LF  M E +   +E TL +VL  C +  +L  G+ +   ++K   + N ++G  L
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG  + A  VF  +   D+V W+A+IT   Q G S E+I LF+ M+     P++
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFED 370
            T+  +LSA  + G L  G+ +     + G   D+             G + D  K++E 
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + +SWNA +S L   G     L +F  M +EG    PN  TFI +L +C     V 
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI--PNMYTFISILGSCSCLFDVH 533

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            GR++   +  +  L   +   + ++D+YA+  +L +A
Sbjct: 534 YGRQVHAHIIKN-QLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 183/368 (49%), Gaps = 14/368 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   CA+  +L    ++H  + K  ++ D H+  SL+ +YA+C     AR V  ++ 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +RD+VSW ++I G    G+A +++ LF  M+ E  +P+E TL + L +C     L LGK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +     K  + L+ ++GSAL+D+Y KCG +  A ++F  M  ++ VTWN ++  YAQ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--CG 359
               + LF  M    V  ++ TL  VL  CA+   L  G+ +     + G   + F  CG
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 360 SID---------DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
            +D         DA+ VF+ +   + V W+A+I+ L   G++ E++ LF  M    G   
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL--GDTL 412

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN  T   +LSA  + G +  G+ +   +   +G        + +V +Y + G + +   
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACV-WKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 471 FVERMPEK 478
             E M ++
Sbjct: 472 LYESMVDR 479



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           V   MP  + VSW A+I  L   G A++++ LF+ M  EG    PN+ T    L AC   
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEG--IMPNEFTLATGLKACSLC 226

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
             +D G+++    +   GL+      S +VDLYA+ G +  A      MPE+ D
Sbjct: 227 MALDLGKQM-HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQND 279


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 306/592 (51%), Gaps = 52/592 (8%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
           T+ +    ++ +L+ +  KC   +  +++   M        N +L  +      + A  L
Sbjct: 48  TQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNL 107

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F  +   ++ ++N M+ G      ++  +L+    M       + +++     +CA L+ 
Sbjct: 108 FKCMPERDQCSWNAMVSGFAQR-DRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMD 166

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L+ GV +H  + K     D ++  +L+ MY++C  + SA++ FD++  R++VSWNS+I+ 
Sbjct: 167 LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITC 226

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDL 253
           Y + G A +A+E+F RM      PDEITL SV  +C  L  +  G  +   V+K +K   
Sbjct: 227 YEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAM-------------------------------V 282
           +  +G+AL+DMY KC  +  AR VFD M                               +
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMM 346

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            ++VV+WNA+I  Y QNG + EA+ LF  +K   + P   T   +L+ACA++  L LG+ 
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406

Query: 343 VDKYASQRGL------RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
              +  + G         DIF           CG ++D   VFE M   + VSWNAMI  
Sbjct: 407 AHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVG 466

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A NG   EAL +F  M   G   RP+ VT IGVLSAC HAGLV+EGR  F  M+   GL
Sbjct: 467 YAQNGYGTEALEIFREMLVSG--ERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGL 524

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
           +P  +HY+CMVDL  RAG L EA + ++ MP + D +V G+LL AC+   N  + + V +
Sbjct: 525 VPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAE 584

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            LLEI+  NSG YV+ S ++A L  W D  ++R  MR+ GV K PGCSWI I
Sbjct: 585 RLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISI 636



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 214/469 (45%), Gaps = 125/469 (26%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR------------------- 181
           VH+ + K     +  + + L+ +Y +CG L+ ARKVFD ++                   
Sbjct: 41  VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100

Query: 182 ------------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
                       ERD  SWN+M+SG+++    +EA+     M  E+F+ +E +  S L +
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L DL +G  + G + K++  L+ YMGSAL+DMY KC  +  A+R FD M  +++V+W
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSW 220

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV------ 343
           N++IT Y QNG + +A+ +F RM   G+ PD+ITL  V SACAS+ A+  G  +      
Sbjct: 221 NSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMK 280

Query: 344 -DKYASQRGLRH---DIF--CGSIDDALKVFEDMPV------------------------ 373
            DKY +   L +   D++  C  +++A  VF+ MP+                        
Sbjct: 281 HDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARL 340

Query: 374 -------TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH- 425
                   N VSWNA+I+    NG   EA+ LF  + +E  +  P   TF  +L+AC + 
Sbjct: 341 MFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRE--SIWPTHYTFGNLLNACANL 398

Query: 426 ----------------------------------------AGLVDEGRRLFDLMSSSFGL 445
                                                    GLV++GR +F+ M     L
Sbjct: 399 ADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERM-----L 453

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERM---PEKVDEIVLGALLGAC 491
              +  ++ M+  YA+ G+ +EA +    M    E+ D + +  +L AC
Sbjct: 454 ERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSAC 502



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 58/307 (18%)

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D      +L +C     +   + V   ++K +     ++ + L+D+YGKCG L  AR+VF
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLF-----------NRMKYAGVNPDKI----- 322
           D M  ++  +WNA++ A  + G  +EA+ LF           N M       D+      
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 323 ---------------TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------- 360
                          +    LSACA +  L +G  +    ++     D++ GS       
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 361 ----IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
               +  A + F+DM V N VSWN++I+    NG A +AL +F RM   G    P+++T 
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG--IEPDEITL 255

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-------SCMVDLYARAGHLSEAW 469
             V SAC     + EG ++          + K + Y       + +VD+YA+   ++EA 
Sbjct: 256 ASVASACASLSAIREGLQI-------HARVMKHDKYRNDLVLGNALVDMYAKCRRVNEAR 308

Query: 470 DFVERMP 476
              +RMP
Sbjct: 309 LVFDRMP 315


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 303/549 (55%), Gaps = 25/549 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDLKDFNYASL------LFHQ 77
           L ++LK C ++K ++Q   IH+ ++    +   F+   ++D+  ++   L      +F  
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDM--YSKCGLAIDAIGVFKT 374

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I +P+   ++ +I  L    Q    S+KL++ M+     P+ +T   +  +  N   L +
Sbjct: 375 IKKPDIVVWSALITCLDQQGQS-EESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQY 433

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G S+H+ V+K G + D  VS++L+TMY + G +    K+++ + +RDL+SWN+ +SG   
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G     + +F  M EE F+P+  T +S+LGSC  L D+  G+ V   ++KN++D N ++
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +ALIDMY KC  L  A   F+ +  +D+ TW  +IT YAQ     +A+  F +M+  GV
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P++ TL G LS C+S+ +L+ G+ +     + G   D+F           CG +++A  
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEA 673

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +FE +   + ++WN +I   A NG+ ++AL  F  M  EG    P+ VTF G+LSAC H 
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG--ISPDGVTFTGILSACSHQ 731

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV+EG+  F+ M   FG+ P  +H +CMVD+  R G   E  DF+++M    + ++   
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           +LGA +   N  + ++    L E++     +Y++ S IFA    WDD  ++R+LM  KGV
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 547 SKTPGCSWI 555
            K PGCSW+
Sbjct: 852 KKEPGCSWV 860



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 240/458 (52%), Gaps = 22/458 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L++C S +++   + IH  ++ + I   + L + ++++    +   YA L+  ++   
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I+GL  A    + S+ L+ +M+  G+ P+ FT      +C+  +AL+ G  +
Sbjct: 177 DVVSWTALIQGLV-AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+  FK+GL  D  V  +L+ +YA+CG+++ A K+F  + E++ V+WN +++GY++ G  
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
              ++LF  M E +   +E TL +VL  C +  +L  G+ +   ++K   + N ++G  L
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG  + A  VF  +   D+V W+A+IT   Q G S E+I LF+ M+     P++
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFED 370
            T+  +LSA  + G L  G+ +     + G   D+             G + D  K++E 
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + +SWNA +S L   G     L +F  M +EG    PN  TFI +L +C     V 
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFI--PNMYTFISILGSCSCLFDVH 533

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            GR++   +  +  L   +   + ++D+YA+  +L +A
Sbjct: 534 YGRQVHAHIIKN-QLDDNNFVCTALIDMYAKCMYLEDA 570



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 183/368 (49%), Gaps = 14/368 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   CA+  +L    ++H  + K  ++ D H+  SL+ +YA+C     AR V  ++ 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +RD+VSW ++I G    G+A +++ LF  M+ E  +P+E TL + L +C     L LGK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +     K  + L+ ++GSAL+D+Y KCG +  A ++F  M  ++ VTWN ++  YAQ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--CG 359
               + LF  M    V  ++ TL  VL  CA+   L  G+ +     + G   + F  CG
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 360 SID---------DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
            +D         DA+ VF+ +   + V W+A+I+ L   G++ E++ LF  M    G   
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL--GDTL 412

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN  T   +LSA  + G +  G+ +   +   +G        + +V +Y + G + +   
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACV-WKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 471 FVERMPEK 478
             E M ++
Sbjct: 472 LYESMVDR 479



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           V   MP  + VSW A+I  L   G A++++ LF+ M  EG    PN+ T    L AC   
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEG--IMPNEFTLATGLKACSLC 226

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
             +D G+++    +   GL+      S +VDLYA+ G +  A      MPE+ D
Sbjct: 227 MALDLGKQM-HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQND 279


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 307/553 (55%), Gaps = 29/553 (5%)

Query: 29  SLLKKCPSTKTVQ---QIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           SLL  C S   +Q   Q+H+ +L      ++I + + LL   +   D   A  +F+   R
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS-LLDLYVKCGDIETAHDIFNLGDR 308

Query: 81  PNEYAFNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
            N   +N+M+     A+ + S    S +++ QM+  G+ P+ FTYP +  +C     +  
Sbjct: 309 TNVVLWNLML----VAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIEL 364

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +HS   K G + D +VS  LI MY++ G LD ARK+ + + +RD+VSW SMI+GY +
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
             + +EA+  F  M++    PD I L S   +C  +  +  G  +   V  +    +  +
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI 484

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + L+++Y +CG    A  +F  + +KD +TWN +I+ + Q+ L  +A+M+F +M  AG 
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGA 544

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
             +  T I  +SA A++  +  GK V   A + G   +             CGSI+DA  
Sbjct: 545 KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKM 604

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F +M + NEVSWN +I++ + +GR  EAL LF++M +EG   +PNDVTFIGVL+AC H 
Sbjct: 605 IFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEG--LKPNDVTFIGVLAACSHV 662

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV+EG   F  MS+ +GL P  +HY+C+VD+  RAG L  A  FV+ MP   + ++   
Sbjct: 663 GLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRT 722

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+  KN ++ +   + LLE+E  +S +YV+ S  +A    W +  ++R +M+++G+
Sbjct: 723 LLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGI 782

Query: 547 SKTPGCSWIGIDD 559
            K PG SWI + +
Sbjct: 783 RKEPGRSWIEVKN 795



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 231/486 (47%), Gaps = 23/486 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNF----LLIRIIDLKDFNYASLLFHQIS 79
           L S+L  C   K   Q   IH Q+         F    L+   +    F  A  +F  + 
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML 206

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +   FN +I G          +L+++ +M+  GL+PD  T   +  +CA++  L  G 
Sbjct: 207 FCDRVTFNTLISGHAQCGHGEC-ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +HS + K G+  D     SL+ +Y +CG +++A  +F+     ++V WN M+  Y ++ 
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              ++ E+FG+M+     P++ T   +L +C   G + LG+ +    +KN  + + Y+  
Sbjct: 326 DLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSG 385

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LIDMY K G L  AR++ + +  +DVV+W +MI  Y Q+    EA+  F  M+  GV P
Sbjct: 386 VLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D I L    SACA I A+  G  +       G   DI            CG  ++A  +F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            ++   +E++WN +IS    +    +AL++F +M + G  A+ N  TFI  +SA  +   
Sbjct: 506 REIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAG--AKYNVFTFISAISALANLAD 563

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + +G+++      + G   ++E  + ++ LY + G + +A      M  + +E+    ++
Sbjct: 564 IKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTII 621

Query: 489 GACQKQ 494
            +C + 
Sbjct: 622 TSCSQH 627



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 220/464 (47%), Gaps = 20/464 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
           V +IH   ++  +     +   +IDL   N     A  +F ++S  +  ++  M+ G   
Sbjct: 62  VLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQ 121

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           +      + +LY QM    + P  +    V  +C        G  +H+ V+K     +  
Sbjct: 122 SGLG-KEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++LI +Y   G    A +VF ++   D V++N++ISG+++ G+ + A+++F  M+   
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD +T+ S+L +C  +GDL  GK +  +++K  M  ++    +L+D+Y KCG +  A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +F+     +VV WN M+ AY Q     ++  +F +M+  G++P++ T   +L  C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
            ++LG+ +   + + G   D++            G +D A K+ E +   + VSW +MI+
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               +    EAL  F+ M   G    P+++      SAC     + +G ++   +  S G
Sbjct: 421 GYVQHDFCEEALATFKEMQDCG--VWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-G 477

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
                  ++ +V+LYAR G   EA+     +  K DEI    L+
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLI 520


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 295/549 (53%), Gaps = 20/549 (3%)

Query: 29  SLLKKCPSTK---TVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLLK C +     T + +H Q+    +         + ++    +    A  +F ++   
Sbjct: 230 SLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPAR 289

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  A+N ++ G        +    +    +  G +PD  T   V  +CA+  AL     V
Sbjct: 290 DRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREV 349

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   + G DE  +VS +++ +Y +CG +DSARKVFD +++R+ VSWN+MI GY++ G A
Sbjct: 350 HAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDA 409

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA+ LF RM  E     ++++++ L +CG+LG L  G+ V   +V+  ++ N  + +AL
Sbjct: 410 TEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNAL 469

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KC     A +VFD +  K  V+WNAMI    QNG S +A+ LF+RM+   V PD 
Sbjct: 470 ITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDS 529

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL+ ++ A A I      +W+  Y+ +  L  D++           CG +  A  +F  
Sbjct: 530 FTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS 589

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + ++WNAMI     +G    A+ LFE M   G    PN+ TF+ VLSAC HAGLVD
Sbjct: 590 ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKV--PNETTFLSVLSACSHAGLVD 647

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG+  F  M   +GL P  EHY  MVDL  RAG L EAW F+++MP +    V GA+LGA
Sbjct: 648 EGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGA 707

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN ++++   Q + E+E      +V+ + I+AN  +W D A++R  M +KG+ KTP
Sbjct: 708 CKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTP 767

Query: 551 GCSWIGIDD 559
           G S + + +
Sbjct: 768 GWSIVQLKN 776



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 198/368 (53%), Gaps = 17/368 (4%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G  P   T+  +   CA    L  G +VH+ +   GL  +   + +L  MYA+C +   A
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLVSVLGSCGD 232
           R+VFD +  RD V+WN++++GY++ G A+ AV +  RM+EE+   PD +TLVSVL +C D
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD 339

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L   + V  F V+   D    + +A++D+Y KCGA+  AR+VFD M +++ V+WNAM
Sbjct: 340 AQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAM 399

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YA+NG + EA+ LF RM   GV+   ++++  L AC  +G LD G+ V +   + GL
Sbjct: 400 IKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGL 459

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             ++            C   D A +VF+++     VSWNAMI     NG + +A+ LF R
Sbjct: 460 ESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSR 519

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGR-RLFDLMSSSFGLIPKSEHYSCMVDLYA 460
           M  E    +P+  T + ++ A   A + D  + R     S    L       + ++D+YA
Sbjct: 520 MQLEN--VKPDSFTLVSIIPAL--ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYA 575

Query: 461 RAGHLSEA 468
           + G +S A
Sbjct: 576 KCGRVSIA 583



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/469 (29%), Positives = 232/469 (49%), Gaps = 62/469 (13%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +   N  ++N MI+G        + +L L+ +M   G+   + +      +C 
Sbjct: 381 ARKVFDGMQDRNSVSWNAMIKGYAENGDA-TEALALFKRMVGEGVDVTDVSVLAALHACG 439

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  L+ G  VH  + +IGL+ + +V ++LITMY +C + D A +VFDE+  +  VSWN+
Sbjct: 440 ELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNA 499

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI G ++ G +++AV LF RM+ E   PD  TLVS++ +  D+ D +  +W+ G+ ++  
Sbjct: 500 MILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLH 559

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D + Y+ +ALIDMY KCG +  AR +F++  ++ V+TWNAMI  Y  +G    A+ LF 
Sbjct: 560 LDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFE 619

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHDIFCGSIDDAL 365
            MK +G  P++ T + VLSAC+  G +D G+       + Y  + G+ H           
Sbjct: 620 EMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEH----------- 668

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-V 424
                        +  M+  L   G+ HEA    ++M  E     P    +  +L AC +
Sbjct: 669 -------------YGTMVDLLGRAGKLHEAWSFIQKMPME-----PGISVYGAMLGACKL 710

Query: 425 HAG--LVDE-GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           H    L +E  +R+F+L         +  ++  + ++YA A      W  V R+   +++
Sbjct: 711 HKNVELAEESAQRIFELEPE------EGVYHVLLANIYANA----SLWKDVARVRTAMEK 760

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIES--SNSGNYVISSKIFANL 528
             L         QK    S  ++QL  EI +  S S N+  +  I+A L
Sbjct: 761 KGL---------QKTPGWS--IVQLKNEIHTFYSGSTNHQQAKDIYARL 798



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 113/271 (41%), Gaps = 56/271 (20%)

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           +A + A A       A+  F  M  A G  P   T   +L  CA+   L  G+ V    +
Sbjct: 193 HARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLA 252

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            RGL  +             C    DA +VF+ MP  + V+WNA+++  A NG A  A+ 
Sbjct: 253 ARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVG 312

Query: 398 LFERMSKEGGAARPNDVTFIGVLSAC-----------VHA-------------------- 426
           +  RM +E G  RP+ VT + VL AC           VHA                    
Sbjct: 313 MVVRMQEEDG-ERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDV 371

Query: 427 ----GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM-PEKVD- 480
               G VD  R++FD M         S  ++ M+  YA  G  +EA    +RM  E VD 
Sbjct: 372 YCKCGAVDSARKVFDGMQDR-----NSVSWNAMIKGYAENGDATEALALFKRMVGEGVDV 426

Query: 481 -EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
            ++ + A L AC +    D  +RV +LL+ I
Sbjct: 427 TDVSVLAALHACGELGFLDEGRRVHELLVRI 457


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 327/580 (56%), Gaps = 36/580 (6%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF 68
           SR+ A     DPSL   + L       S K  +Q H+++L   + + +FL  ++I    F
Sbjct: 11  SRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLI----F 66

Query: 69  NYA--------SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
            YA         L+F  +   N + +N +I G     + Y+ + +L+ QM    + PD+F
Sbjct: 67  AYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKN-RLYNEAFQLFNQMCSSDVLPDDF 125

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T   +    + L AL  G S+H    + G   D  V++S+++MY +CG  D +RKVFDE+
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEM 185

Query: 181 RERDLVSWNSMISGYSKMG---YAKEAVELFGRMREEEFLPDEITLVSVLGSC-GDLGDL 236
             R+  SWN +I+GY+  G   + +E  E   +M+ +E  PD  T+ S+L  C GD+G  
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKW 245

Query: 237 VLGKWVEGFVVKNKM----DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
             G+ +  ++VKN++    D + ++G  LIDMY +   +V  RRVFD M  ++V +W AM
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAM 305

Query: 293 ITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           I  Y +NG S+EA+ LF  M+   GV P++++L+ VL AC+S   L  G+ +  +A ++ 
Sbjct: 306 INGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKE 365

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLF 399
           L +++            CGS+D A +VFED  +  + +SW++MIS    +G+  EA+LL+
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           ++M + G   RP+ +T +G+LSAC  +GLV+EG  ++  + + +G+ P  E  +C+VD+ 
Sbjct: 426 DKMLQAG--IRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDML 483

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RAG L  A DF++ +P +    V GAL+       + ++ +   + L+++E  N  NYV
Sbjct: 484 GRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYV 543

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             S ++A+ + WD  A++R +M++K + K PGCSWI I++
Sbjct: 544 SISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 583


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 313/539 (58%), Gaps = 24/539 (4%)

Query: 36  STKTVQQIHTQMLINF-IQKPNFLLIRIIDLKDFNYASLLFHQI--SRPNEYA--FNVMI 90
           S K  +QIH Q+ I F   +  ++L  ++++   N +    HQ+  S PN  A  +N MI
Sbjct: 270 SLKLGKQIH-QLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 328

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA-LNHGVSVHSSVFKIG 149
                A+  +  ++ L+ +M+  G+K D  T   +   C  L + L  G S+H+ V K G
Sbjct: 329 SAYA-AFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSG 387

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           +  D  + ++L++MY     ++S +K+FD ++  D++SWN+MI   ++     +A ELF 
Sbjct: 388 MRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFE 447

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
           RMRE E  P+  T++S+L +C D+  L  G+ + G+V+K+ +++N  + +AL DMY  CG
Sbjct: 448 RMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 507

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
               AR +F+   ++D+++WNAMI +Y +N  +++A++LF+RM  +   P+ +T+I VLS
Sbjct: 508 DEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRM-ISEAEPNSVTIINVLS 566

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDI-------------FCGSIDDALKVFEDMPVTNE 376
           +   +  L  G+ +  Y ++RG    +              CGS+  A  +F+ +P  N 
Sbjct: 567 SFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNI 626

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           +SWNAMI+    NGR  +A+L F +M ++G   RPN VTF+ VLSAC H+G ++ G +LF
Sbjct: 627 ISWNAMIAGYGMNGRGSDAMLAFSQMLEDG--FRPNGVTFVSVLSACSHSGFIEMGLQLF 684

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
             M   F + P+  HYSC+VDL AR G + EA +F++ MP + D  V  ALL +C+   +
Sbjct: 685 HSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSD 744

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
              ++ + + L ++E  N+GNYV+ S ++A   +W +  ++R  ++EKG+ K PG SWI
Sbjct: 745 AKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 803



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/491 (28%), Positives = 242/491 (49%), Gaps = 21/491 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +S  +   +N M+ G    W  Y  ++ L  +M R  L+P++ T   + ++C 
Sbjct: 107 ARCVFDAMSDRDVVLWNAMVYGYV-GWGCYEEAMLLVREMGRENLRPNSRTMVALLLACE 165

Query: 131 NLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
               L  G  VH    + G+ D + HV+ +LI  Y R   +     +FD +  R++VSWN
Sbjct: 166 GASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWN 224

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MISGY  +G   +A+ELF +M  +E   D +T++  + +C +LG L LGK +    +K 
Sbjct: 225 AMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKF 284

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           +   + Y+ +AL++MY   G+L  + ++F+++ N+D   WN+MI+AYA  G   EA+ LF
Sbjct: 285 EFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLF 344

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGA-LDLGKWVDKYASQRGLRHDIFCGS-------- 360
            RM+  GV  D+ T++ +LS C  + + L  GK +  +  + G+R D   G+        
Sbjct: 345 IRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTE 404

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              ++   K+F+ M   + +SWN MI ALA N    +A  LFERM +     +PN  T I
Sbjct: 405 LNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRE--SEIKPNSYTII 462

Query: 418 GVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
            +L+AC     +D GR +   +M  S  +       + + D+Y   G  + A D  E  P
Sbjct: 463 SILAACEDVTCLDFGRSIHGYVMKHSIEI--NQPLRTALADMYMNCGDEATARDLFEGCP 520

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
           ++ D I   A++ +  K      +  +   ++     NS   +     F +L        
Sbjct: 521 DR-DLISWNAMIASYVKNNQAHKALLLFHRMISEAEPNSVTIINVLSSFTHLATLPQGQS 579

Query: 537 MRALMREKGVS 547
           + A +  +G S
Sbjct: 580 LHAYVTRRGFS 590



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 209/400 (52%), Gaps = 46/400 (11%)

Query: 60  IRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
           I+I D K +N  S++ HQ +  N+ A                  L  Y QM+ LG+ P+N
Sbjct: 13  IQIKDPKHWN--SVIKHQANLKNDQAI-----------------LSAYTQMESLGVLPNN 53

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
            T P V  +CA   A+  G S+H S+    L +D  V  +++  Y +CG ++ AR VFD 
Sbjct: 54  TTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDA 113

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + +RD+V WN+M+ GY   G  +EA+ L   M  E   P+  T+V++L +C    +L LG
Sbjct: 114 MSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLG 173

Query: 240 KWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           + V G+ ++N M D N ++ +ALI  Y +    V    +FD MV +++V+WNAMI+ Y  
Sbjct: 174 RGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLP-LLFDLMVVRNIVSWNAMISGYYD 232

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358
            G   +A+ LF +M    V  D +T++  + ACA +G+L LGK + + A +     D++ 
Sbjct: 233 VGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYI 292

Query: 359 -----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                      GS++ + ++FE +P  +   WN+MISA A  G   EA+ LF RM  EG 
Sbjct: 293 LNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEG- 351

Query: 408 AARPNDVTFIGVLSAC------------VHAGLVDEGRRL 435
             + ++ T + +LS C            +HA ++  G R+
Sbjct: 352 -VKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRI 390



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 14/311 (4%)

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           +I+ +D   WNS+I   + +   +  +  + +M     LP+  TL  VL +C     +  
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           GK +   +    +  +  +G+A++D Y KCG +  AR VFDAM ++DVV WNAM+  Y  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RHD 355
            G   EA++L   M    + P+  T++ +L AC     L LG+ V  Y  + G+      
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 191

Query: 356 IFCGSIDDALK--------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
           +    I   L+        +F+ M V N VSWNAMIS     G   +AL LF +M  +  
Sbjct: 192 VATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVD-- 249

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             + + VT +  + AC   G +  G+++  L +  F  +      + ++++Y+  G L  
Sbjct: 250 EVKFDCVTMLVAVQACAELGSLKLGKQIHQL-AIKFEFVEDLYILNALLNMYSNNGSLES 308

Query: 468 AWDFVERMPEK 478
           +    E +P +
Sbjct: 309 SHQLFESVPNR 319


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 287/502 (57%), Gaps = 18/502 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F ++ + +  A+N MI G +     Y    +L  QM+   + P++ T   V  + A
Sbjct: 173 AKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVA 231

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-ERDLVSWN 189
            + +L HG  +H    + G   D  V   ++ +Y +C  +D AR++FD +   ++ V+W+
Sbjct: 232 QVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWS 291

Query: 190 SMISGYSKMGYAKEAVELFGRM---REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +M+  Y    + +EA+ELF ++   +++  +   +TL +V+  C +L DL  G  +  + 
Sbjct: 292 AMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYA 351

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K+   L+  +G+ L+ MY KCG +  A R F+ M  +D V++ A+I+ Y QNG S E +
Sbjct: 352 IKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGL 411

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            +F  M+ +G+NP+K TL  VL ACA +  L  G     YA   G   D           
Sbjct: 412 RMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMY 471

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG ID A KVF+ M     VSWN MI A   +G   EALLLF+ M  EG   +P+DVT
Sbjct: 472 AKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEG--LKPDDVT 529

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           FI ++SAC H+GLV EG+  F+ M+  FG+IP+ EHY+CMVDL +RAG   E   F+E+M
Sbjct: 530 FICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKM 589

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + D  V GALL AC+  KN ++ + V + + ++   ++GN+V+ S +++ +  WDD+A
Sbjct: 590 PLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAA 649

Query: 536 KMRALMREKGVSKTPGCSWIGI 557
           ++R   +E+G  K+PGCSWI I
Sbjct: 650 QVRFTQKEQGFEKSPGCSWIEI 671



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/501 (30%), Positives = 250/501 (49%), Gaps = 34/501 (6%)

Query: 1   MLLRAK---AYSRHLAFTELNDPSLLREKLL-SLLKKCPSTKTVQQIHTQMLINFIQKPN 56
           M LR +    Y   L  + +   SL R KL+   L KC     + + H   L NF     
Sbjct: 1   MQLRTRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKC-----LHRTHETNLTNFDVPFE 55

Query: 57  FLLIRIIDLKDFNYASLLFHQIS-RP-NEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRL 113
            L+   I   +   A  +F ++  RP N   +N++IR    AW   Y  ++ LYY+M   
Sbjct: 56  KLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAY--AWNGPYEEAIDLYYKMLGY 113

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+ P+ FT+PFV  +C+ L   + G  +H  + ++ L+ + +VS +L+  YA+CG LD A
Sbjct: 114 GITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDA 173

Query: 174 RKVFDEIRERDLVSWNSMISGYS-KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           ++VFD++ +RD+V+WNSMISG+S   G   E   L  +M + +  P+  T+V VL +   
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQ 232

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNA 291
           +  L  GK + GF V+     +  +G+ ++D+YGKC  +  ARR+FD M + K+ VTW+A
Sbjct: 233 VNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSA 292

Query: 292 MITAYAQNGLSNEAIMLFNR---MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           M+ AY       EA+ LF +   +K   +    +TL  V+  CA++  L  G  +  YA 
Sbjct: 293 MVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAI 352

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + G   D+            CG I+ A++ F +M + + VS+ A+IS    NG + E L 
Sbjct: 353 KSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLR 412

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           +F  M   G    P   T   VL AC H   +  G       +   G    +   + ++D
Sbjct: 413 MFLEMQLSG--INPEKATLASVLPACAHLAGLHYG-SCSHCYAIICGFTADTMICNALID 469

Query: 458 LYARAGHLSEAWDFVERMPEK 478
           +YA+ G +  A    +RM ++
Sbjct: 470 MYAKCGKIDTARKVFDRMHKR 490



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 185/356 (51%), Gaps = 26/356 (7%)

Query: 69  NYASLLFHQIS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-----NFTY 122
           +YA  +F  +    NE  ++ M+ G          +L+L+ Q+  L LK D       T 
Sbjct: 272 DYARRIFDMMGIVKNEVTWSAMV-GAYVVCDFMREALELFCQL--LMLKDDVIVLSAVTL 328

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             V   CANL  L+ G  +H    K G   D  V ++L++MYA+CG ++ A + F+E+  
Sbjct: 329 ATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDL 388

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           RD VS+ ++ISGY + G ++E + +F  M+     P++ TL SVL +C  L  L  G   
Sbjct: 389 RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS 448

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             + +      +  + +ALIDMY KCG +  AR+VFD M  + +V+WN MI AY  +G+ 
Sbjct: 449 HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIG 508

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGL--RHDIFCG 359
            EA++LF+ M+  G+ PD +T I ++SAC+  G +  GK W +      G+  R + +  
Sbjct: 509 LEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYAC 568

Query: 360 SID---------DALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKE 405
            +D         +     E MP+  +V  W A++SA     R ++ + L E +SK+
Sbjct: 569 MVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSAC----RVYKNVELGEGVSKK 620



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 197/409 (48%), Gaps = 29/409 (7%)

Query: 128 SCANLLALNHGVSVHSSVFKI-------GLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           SC    +L  G  +H  + K         L   D     L+ +Y  C +L  AR VFD++
Sbjct: 18  SCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKM 77

Query: 181 --RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
             R +++V WN +I  Y+  G  +EA++L+ +M      P+  T   VL +C  L +   
Sbjct: 78  PHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASE 137

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA- 297
           G+ +   + + +++ N Y+ +AL+D Y KCG L  A+ VFD M  +DVV WN+MI+ ++ 
Sbjct: 138 GREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSL 197

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
             G  +E   L  +M+   V+P+  T++GVL A A + +L  GK +  +  +RG   D+ 
Sbjct: 198 HEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVV 256

Query: 358 -----------CGSIDDALKVFEDMP-VTNEVSWNAMISALAFNGRAHEALLLF-ERMSK 404
                      C  ID A ++F+ M  V NEV+W+AM+ A        EAL LF + +  
Sbjct: 257 VGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLML 316

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           +      + VT   V+  C +   +  G  L      S G +      + ++ +YA+ G 
Sbjct: 317 KDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKS-GFVLDLMVGNTLLSMYAKCGI 375

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           ++ A  F   M  + D +   A++    +  N   S+  +++ LE++ S
Sbjct: 376 INGAMRFFNEMDLR-DAVSFTAIISGYVQNGN---SEEGLRMFLEMQLS 420


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/482 (38%), Positives = 268/482 (55%), Gaps = 20/482 (4%)

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKI 148
           IR L+++   + H L+ +  +      P + T+PF   S + L   L  G  +H+   K+
Sbjct: 50  IRALSSS-GLHLHVLRFHSHLP----NPSHLTFPFAIKSASRLPDPLTAGAQLHARSLKL 104

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSKMGYAKEAVEL 207
               + HV  SL+ +YARCG+L  A+K FDE+R+    VSW ++I+ Y   G   EA+ +
Sbjct: 105 PSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGV 164

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
                     PD  T V VL +C  + DLV G+ V     K  +  N ++ +A +D+Y K
Sbjct: 165 ARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVK 224

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           CG +  AR VFD M NKDVV W AM+  YA NG   EA+ LF  M+  G+ PD  T+ G 
Sbjct: 225 CGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGA 284

Query: 328 LSACASIGALDLGKWV------DKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNE 376
           LSAC  +GALDLG+ V      D+      L   +      CGS  +A  VF+ M   + 
Sbjct: 285 LSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDI 344

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           + WNAMI  L   G    A  L  +M K G     ND TFIG+L +C H GLV +GRR F
Sbjct: 345 IVWNAMILGLGMTGHEKIAFALVGQMKKSGMTL--NDNTFIGLLCSCTHTGLVKDGRRYF 402

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
             M+  + + P+ EHY  MVDL +RAG L EA   ++ MP + + +V GALLG C+  +N
Sbjct: 403 RNMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRN 462

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
            D+++ V++ L+++E  NSGNYV+ S I++N   W+D+AK+R  M+ KGV K P  SW+ 
Sbjct: 463 ADLAEHVLKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVE 522

Query: 557 ID 558
           +D
Sbjct: 523 LD 524


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/505 (36%), Positives = 287/505 (56%), Gaps = 41/505 (8%)

Query: 95  TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG----- 149
           T    +  ++  Y +M   G +PDNF +P V  + + L  L  G  +H++  K G     
Sbjct: 68  TRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSS 127

Query: 150 ----------------LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
                           + +    +++L+ MYA+ G++D ++ +F+   +RD+VSWN+MIS
Sbjct: 128 VTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMIS 187

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            +S+     EA+  F  M  E    D +T+ SVL +C  L  L +GK +  +V++N  DL
Sbjct: 188 SFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN-DL 246

Query: 254 --NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             N ++GSAL+DMY  C  +   RRVFD ++ + +  WNAMI+ YA+NGL  +A++LF  
Sbjct: 247 IENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIE 306

Query: 312 M-KYAGVNPDKITLIGVLSACA-SIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           M K AG+ P+  T+  V+ AC  S+ A+  GK +  YA +  L  DI            C
Sbjct: 307 MIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKC 366

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE---GGAARPNDVT 415
           G ++ + +VF +MP  N ++WN +I A   +G+  EAL LF+ M  E   GG A+PN+VT
Sbjct: 367 GCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVT 426

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           FI V +AC H+GL+ EG  LF  M    G+ P S+HY+C+VDL  RAG L EA++ V  M
Sbjct: 427 FITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTM 486

Query: 476 PEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           P + D++    +LLGAC+  +N ++ +   + LL +E + + +YV+ S I+++  +W+ +
Sbjct: 487 PAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKA 546

Query: 535 AKMRALMREKGVSKTPGCSWIGIDD 559
            ++R  MR+ GV K PGCSWI   D
Sbjct: 547 MEVRKNMRQMGVKKEPGCSWIEFRD 571



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 194/388 (50%), Gaps = 27/388 (6%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+     L   + +  LF      +  ++N MI   + +  ++S +L  +  M   G+
Sbjct: 152 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQS-DRFSEALAFFRLMVLEGV 210

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSAR 174
           + D  T   V  +C++L  L+ G  +H+ V +   L E+  V  +L+ MY  C +++S R
Sbjct: 211 ELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGR 270

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSC-GD 232
           +VFD I  R +  WN+MISGY++ G  ++A+ LF  M +    LP+  T+ SV+ +C   
Sbjct: 271 RVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHS 330

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L  +  GK +  + ++N +  +  +GSAL+DMY KCG L  +RRVF+ M NK+V+TWN +
Sbjct: 331 LAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVL 390

Query: 293 ITAYAQNGLSNEAIMLFNRM-----KYAGVNPDKITLIGVLSACASIGALDLG------- 340
           I A   +G   EA+ LF  M     +     P+++T I V +AC+  G +  G       
Sbjct: 391 IMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRM 450

Query: 341 ---KWVDKYASQRGLRHDIF--CGSIDDALKVFEDMPVTNEV--SWNAMISALAFNGRAH 393
                V+  +       D+    G +++A ++   MP   +   +W++++ A     R H
Sbjct: 451 KHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC----RIH 506

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLS 421
           + + L E  +K      PN  +   +LS
Sbjct: 507 QNVELGEVAAKNLLHLEPNVASHYVLLS 534



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 47/348 (13%)

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           R   SW   +   ++    +EA+  +  M      PD     +VL +   L DL  G+ +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 243 EGFVVK-NKMDLNFYMGSALIDMYGKCGALV--------------------PARRVFDAM 281
               VK      +  + + L++MYGKCG +                      ++ +F++ 
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
           V++D+V+WN MI++++Q+   +EA+  F  M   GV  D +T+  VL AC+ +  LD+GK
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 342 WVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFN 389
            +  Y  +   L  + F GS           ++   +VF+ +       WNAMIS  A N
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-GLVDEGRRLF-----DLMSSSF 443
           G   +AL+LF  M K  G   PN  T   V+ ACVH+   + +G+ +      ++++S  
Sbjct: 295 GLDEKALILFIEMIKVAGLL-PNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +       S +VD+YA+ G L+ +      MP K + I    L+ AC
Sbjct: 354 TV------GSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMAC 394


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/502 (37%), Positives = 287/502 (57%), Gaps = 16/502 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F Q+   N  ++  M+ G  T  +    + +L+  M +   L+ + F    V  + 
Sbjct: 177 ARRVFDQMPHRNAVSWAAMVSGYATG-KCSEEAFELFRLMLQECPLEKNEFVATAVLSAV 235

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L L  GV +H  V K GL     V +SL+TMYA+   +D+A  VF   +ER+ ++W+
Sbjct: 236 SVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWS 295

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GY++ G A  A  +F +M    F P E T V +L +  D+G LV+GK   G +VK 
Sbjct: 296 AMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKL 355

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIML 308
             +   Y+ SAL+DMY KCG    A+  F  + +  DVV W AMIT + QNG   EA+ML
Sbjct: 356 GFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALML 415

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR---------HDIF-- 357
           ++RM   GV P  +T+  VL ACA + AL+ GK +     + G             ++  
Sbjct: 416 YSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSK 475

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG+++D++ VF  MP  + +SWN++IS  + +GR  +AL LFE M  EG A  P+ +TFI
Sbjct: 476 CGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIA--PDHITFI 533

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VL AC H GLVD G   F  MS  +GLIPK +HY+C+VD+ +RAG L EA DF+E +  
Sbjct: 534 NVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITI 593

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
                +   +LGAC+  ++ DV     + L+E+ + +S  Y++ S I+A  + W+D  ++
Sbjct: 594 DHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERV 653

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R LMR +GVSK PGCSW+ +++
Sbjct: 654 RHLMRLRGVSKDPGCSWVELNN 675



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 173/368 (47%), Gaps = 26/368 (7%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEIRE--RDLVSWNSMIS 193
           G ++H    K G      VS+SLIT Y    +  L +A  VF +I    RD+ SWNS+++
Sbjct: 33  GDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSLLN 92

Query: 194 GYSKMGYAKEAVELFGRM--REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK--- 248
             S+      A+  F  M    +  LP   +  +V  +   +     G     F  K   
Sbjct: 93  PLSRH-QPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPS 151

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           +    N ++ +AL++MY K GA+  ARRVFD M +++ V+W AM++ YA    S EA  L
Sbjct: 152 SSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFEL 211

Query: 309 FNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------- 360
           F  M +   +  ++     VLSA +    L +G  +     + GL   +   +       
Sbjct: 212 FRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYA 271

Query: 361 ----IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
               +D A+ VF      N ++W+AMI+  A NG A  A  +F +M   G +  P + TF
Sbjct: 272 KAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFS--PTEFTF 329

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +G+L+A    G +  G++   LM    G   +    S +VD+YA+ G   +A D   ++ 
Sbjct: 330 VGILNASSDMGALVVGKQAHGLM-VKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLY 388

Query: 477 EKVDEIVL 484
           + VD++V+
Sbjct: 389 D-VDDVVI 395


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 287/510 (56%), Gaps = 23/510 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N  +L    + + + +++N +I  L  +    + +L  +  M++L L P   ++P    +
Sbjct: 27  NLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEALLAFSSMRKLSLYPTRSSFPCAIKA 85

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C++L  +  G   H   F  G   D  VS +LI MY+ CGKL+ ARKVFDEI +RD+VSW
Sbjct: 86  CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSW 145

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEE------FLPDEITLVSVLGSCGDLGDLVLGKWV 242
            SMI GY   G A +AV LF  +  +E         D + LVSV+ +C  +    L + +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCG--ALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
             FV+K   D    +G+ L+D Y K G   +  AR++FD +V+KD V++N++++ YAQ+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 301 LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           +SNEA  +F R+ K   V  + ITL  VL A +  GAL +GK +     + GL  D+   
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG ++ A K F+ M   N  SW AMI+    +G A +AL LF  M   G  
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-- 383

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            RPN +TF+ VL+AC HAGL  EG R F+ M   FG+ P  EHY CMVDL  RAG L +A
Sbjct: 384 VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
           +D ++RM  K D I+  +LL AC+  KN ++++  +  L E++SSN G Y++ S I+A+ 
Sbjct: 444 YDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADA 503

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             W D  ++R +M+ +G+ K PG S + ++
Sbjct: 504 GRWKDVERVRMIMKNRGLVKPPGFSLLELN 533


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/529 (34%), Positives = 286/529 (54%), Gaps = 46/529 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ I  P   A+  +IR  T+    +  SL  +  M   GL PD+  +P V  SCA L+
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPH-QSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL----------------------- 170
            LN G S+H  + ++GLD D +  ++L+ MY++   L                       
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 171 ---------DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
                    DS RK+F+ + E+DLVSWN++I+G ++ G  +E + +   M      PD  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           TL SVL    +  D+  GK + G  ++  +D + Y+ S+LIDMY KC  +  + RVF  +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             +D ++WN++I    QNGL +E +  F +M  A + P   +   ++ ACA +  L LGK
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y ++ G   +IF           CG+I  A ++F+ M + + VSW AMI   A +G
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHG 420

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +A +A+ LFE+M  EG   +PN V F+ VL+AC H GLVDE  + F+ M+  FG+ P  E
Sbjct: 421 QAPDAIELFEQMETEG--IKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVE 478

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+ + DL  RAG L EA+DF+  M       +   LL AC+   N D++++V   +LE+
Sbjct: 479 HYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEV 538

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + +N+G Y++ + I++  + W ++AK RA MR  G+ KTP CSWI + +
Sbjct: 539 DPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 587



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 156/279 (55%), Gaps = 1/279 (0%)

Query: 60  IRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
           +R + +   +    +F  +   +  ++N +I G       Y  +L++  +M    LKPD+
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAG-NARNGLYEETLRMIREMGGANLKPDS 239

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           FT   V    A  + ++ G  +H    + GLD D +V+ SLI MYA+C ++  + +VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + ERD +SWNS+I+G  + G   E +  F +M   +  P   +  S++ +C  L  L LG
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           K + G++ +N  D N ++ S+L+DMY KCG +  A+++FD M  +D+V+W AMI   A +
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           G + +AI LF +M+  G+ P+ +  + VL+AC+  G +D
Sbjct: 420 GQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVD 458



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 167/372 (44%), Gaps = 47/372 (12%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           +Y+    L  + ++F+ I     ++W S+I  Y+  G   +++  F  M      PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA-------- 274
             SVL SC  L DL LG+ + G++++  +D + Y G+AL++MY K   L  +        
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 275 ------------------------RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                                   R++F+ M  KD+V+WN +I   A+NGL  E + +  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M  A + PD  TL  VL   A    +  GK +   + ++GL  DI+           C 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            + D+ +VF  +   + +SWN++I+    NG   E L  F +M       +P   +F  +
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLM--AKIKPKSYSFSSI 346

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           + AC H   +  G++L   ++ + G        S +VD+YA+ G++  A    +RM  + 
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR- 404

Query: 480 DEIVLGALLGAC 491
           D +   A++  C
Sbjct: 405 DMVSWTAMIMGC 416


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 327/580 (56%), Gaps = 36/580 (6%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF 68
           SR+ A     DPSL   + L       S K  +Q H+++L   + + + L  ++I    F
Sbjct: 11  SRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLI----F 66

Query: 69  NYA--------SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
            YA         L+F  +   N + +N +I G     + Y+ + +L+ QM    + PD+F
Sbjct: 67  AYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKN-RLYNEAFQLFNQMCSSDVLPDDF 125

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T   +    + L AL  G S+H    +IG   D  V++S+++MY +CG  + +RKVFDE+
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185

Query: 181 RERDLVSWNSMISGYSKMG---YAKEAVELFGRMREEEFLPDEITLVSVLGSC-GDLGDL 236
             R+  SWN +I+GY+  G   + +E  E   +M+ +E  PD  T+ S+L  C GD G  
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKW 245

Query: 237 VLGKWVEGFVVKNKM----DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
             G+ +  ++VKN++    D + ++G  LIDMY +   +V  RRVFD M  ++V +W AM
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAM 305

Query: 293 ITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           I  Y +NG S+EA+ LF  M+   G+ P++++L+ VL AC+S   L  G+ +  +A ++ 
Sbjct: 306 INGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKE 365

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLF 399
           L +++            CGS+D A +VFED  +  + +SW++MIS    +G+  EA+LL+
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLY 425

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           ++M + G   RP+ +T +G+LSAC  +GLV+EG  ++  + + +G+ P  E ++C+VD+ 
Sbjct: 426 DKMLQAG--IRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDML 483

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RAG L  A DF++ MP +    V GAL+       + ++ +   + L+++E  N  NYV
Sbjct: 484 GRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYV 543

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             S ++A+ + WD  A++R +M++K + K PGCSWI I++
Sbjct: 544 SISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 583


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/500 (36%), Positives = 283/500 (56%), Gaps = 15/500 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F  + + N ++++ M+ G   A +    +  L+  M +    +   F    V  + 
Sbjct: 172 ARRVFDGMPQRNSFSWSTMVAGYA-AEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAV 230

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L L  G  +H  + K GL +   V +SL+TMYA+ G + +A  VF+  RER+ ++W+
Sbjct: 231 SVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWS 290

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GY++ G A  AV +F +M    F P E T V VL +  DLG L +GK   G +VK 
Sbjct: 291 AMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKL 350

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             ++  Y+ SAL+DMY KCG +  A+  FD +   D+V W AM++ + QNG   EA+ L+
Sbjct: 351 GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLY 410

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            RM   G+ P K T+   L ACA I AL+ GK +     + GL                C
Sbjct: 411 ARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKC 470

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G+++D + VF  +P  + ++WN++IS  + NG  + AL LFE M  EG    P+++TFI 
Sbjct: 471 GNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEG--TIPDNITFIN 528

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC H GLVD G   F LM+  +GL P+ +HY+CMVD+ +RAG L EA DF+E +   
Sbjct: 529 ILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITID 588

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +   +LGAC+  ++ DV     + L+E+ + +S  Y++ S I+A+ + W+D  ++R
Sbjct: 589 HGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVR 648

Query: 539 ALMREKGVSKTPGCSWIGID 558
            LMR +GV+K PGCSW+ ++
Sbjct: 649 HLMRLRGVNKDPGCSWVELN 668



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 182/337 (54%), Gaps = 17/337 (5%)

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  SL+ MY + G +  AR+VFD + +R+  SW++M++GY+    ++EA +LF  M EE
Sbjct: 154 YVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 213

Query: 215 -EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY-MGSALIDMYGKCGALV 272
                 E    +VL +      L++G+ + G +VK+ + L+F  + ++L+ MY K G + 
Sbjct: 214 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGL-LDFVSVENSLVTMYAKAGCMG 272

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            A  VF++   ++ +TW+AMIT YAQNG ++ A+ +F++M  AG  P + T +GVL+A +
Sbjct: 273 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 332

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +GAL +GK       + G    I+           CG I DA + F+ +   + V W A
Sbjct: 333 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 392

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           M+S    NG   EAL L+ RM KEG    P+  T    L AC     ++ G++L   +  
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEG--IIPSKSTIASGLRACAGIAALEPGKQLHTQI-V 449

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +GL   +   S +  +Y++ G+L +      R+P++
Sbjct: 450 KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 172/373 (46%), Gaps = 29/373 (7%)

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEI--RERDLVSWNSM- 191
           HG ++H+   K G      V++SLI  Y+   +  L +A  VFD+I    RD+ SWNS+ 
Sbjct: 30  HGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLL 89

Query: 192 --ISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
             +SG+  +    +A+  F  M      LP   +  +   +         G        K
Sbjct: 90  NPLSGHRPL----DALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACK 145

Query: 249 NKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
               + N Y+ ++L++MY K G +  ARRVFD M  ++  +W+ M+  YA    S EA  
Sbjct: 146 IPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFD 205

Query: 308 LFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
           LF  M +       +     VLSA +    L +G+ +     + GL   +          
Sbjct: 206 LFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMY 265

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
              G +  A  VFE     N ++W+AMI+  A NG A  A+ +F +M   G    P + T
Sbjct: 266 AKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAG--FTPTEFT 323

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+GVL+A    G +  G++   LM    G   +    S +VD+YA+ G +++A +  +++
Sbjct: 324 FVGVLNASSDLGALAVGKQAHGLM-VKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL 382

Query: 476 PEKVDEIVLGALL 488
            E VD ++  A++
Sbjct: 383 YE-VDIVLWTAMV 394


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/500 (36%), Positives = 285/500 (57%), Gaps = 15/500 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F  + + N ++++ M+ G   A +    +  L+  M +    +   F    V  + 
Sbjct: 66  ARRVFDGMPQRNSFSWSTMVAGYA-AEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAV 124

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L L  G  +H  + K GL +   V +SL+TMYA+ G + +A  VF+  RER+ ++W+
Sbjct: 125 SVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWS 184

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GY++ G A  AV +F +M    F P E T V VL +  DLG L +GK   G +VK 
Sbjct: 185 AMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKL 244

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             ++  Y+ SAL+DMY KCG +  A+  FD +   D+V W AM++ + QNG   EA+ L+
Sbjct: 245 GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLY 304

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR---------HDIF--C 358
            RM   G+ P K T+   L ACA I AL+ GK +     + GL            ++  C
Sbjct: 305 ARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKC 364

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G+++D + VF  +P  + ++WN++IS  + NG  + AL LFE M  EG    P+++TFI 
Sbjct: 365 GNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEG--TIPDNITFIN 422

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC H GLVD G   F LM+  +GL P+ +HY+CMVD+ +RAG L EA DF+E +   
Sbjct: 423 ILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITID 482

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +   +LGAC+  ++ DV     + L+E+ + +S  Y++ S I+A+ + W+D  ++R
Sbjct: 483 HGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVR 542

Query: 539 ALMREKGVSKTPGCSWIGID 558
            LMR +GV+K PGCSW+ ++
Sbjct: 543 HLMRLRGVNKDPGCSWVELN 562



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 182/337 (54%), Gaps = 17/337 (5%)

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  SL+ MY + G +  AR+VFD + +R+  SW++M++GY+    ++EA +LF  M EE
Sbjct: 48  YVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 107

Query: 215 -EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY-MGSALIDMYGKCGALV 272
                 E    +VL +      L++G+ + G +VK+ + L+F  + ++L+ MY K G + 
Sbjct: 108 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGL-LDFVSVENSLVTMYAKAGCMG 166

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            A  VF++   ++ +TW+AMIT YAQNG ++ A+ +F++M  AG  P + T +GVL+A +
Sbjct: 167 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 226

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +GAL +GK       + G    I+           CG I DA + F+ +   + V W A
Sbjct: 227 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 286

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           M+S    NG   EAL L+ RM KEG    P+  T    L AC     ++ G++L   +  
Sbjct: 287 MVSGHVQNGEHEEALTLYARMDKEG--IIPSKSTIASGLRACAGIAALEPGKQLHTQI-V 343

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +GL   +   S +  +Y++ G+L +      R+P++
Sbjct: 344 KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 380


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/496 (38%), Positives = 287/496 (57%), Gaps = 25/496 (5%)

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLA 134
           H+  R + +  N MI+      ++YS S  LY  ++R     PD+FT+  +  SCA  +A
Sbjct: 45  HRPHRDDAFLCNSMIKAYV-GMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMA 103

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  G  +HS V  +G   D + + +L+ MYA+ GK+D ARK+FDE+ +R  VSW ++I G
Sbjct: 104 IWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGG 163

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y + G    A +LF +M E+    D     +++ +   LGD+   +     +     + +
Sbjct: 164 YVRSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSAR----KLFDEMPERS 215

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK- 313
               + +I  Y   G L  AR +FDAM  K++ +WNAMI+ Y QN    EA+ LF+ M+ 
Sbjct: 216 VVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQS 275

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSID 362
              + PD++T++ VL A A +GALDLG WV ++  ++ L           D++  CG I 
Sbjct: 276 TTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIV 335

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            +  VF++MP     SWNA+I+A A NGRA EAL LF  M+ +G    PN++T IGVLSA
Sbjct: 336 KSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG--FMPNEITMIGVLSA 393

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H+GLV+EG+R F  M   FGL PK EHY CMVDL  RAG L EA   +E MP + + I
Sbjct: 394 CNHSGLVEEGKRWFKAMEE-FGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGI 452

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +L + L AC   K+   ++RV++  +++E+ N GNY++   ++AN K W ++ +++ LMR
Sbjct: 453 ILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMR 512

Query: 543 EKGVSKTPGCSWIGID 558
             GV K  GCS I +D
Sbjct: 513 RNGVKKEAGCSAIEVD 528



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 127/220 (57%), Gaps = 10/220 (4%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFV 125
           + + A  LF  +   N +++N MI G     Q Y  +LKL+++M+    L+PD  T   V
Sbjct: 231 NLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPY-EALKLFHEMQSTTSLEPDEVTIVSV 289

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             + A+L AL+ G  VH  V +  LD   +V  +LI MYA+CG++  +R VFD + E++ 
Sbjct: 290 LPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKET 349

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-W--- 241
            SWN++I+ ++  G AKEA+ LF  M  + F+P+EIT++ VL +C   G +  GK W   
Sbjct: 350 ASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKA 409

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           +E F +  K++   + G  ++D+ G+ G L  A ++ ++M
Sbjct: 410 MEEFGLTPKIE---HYG-CMVDLLGRAGCLQEAEKLMESM 445



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 28/268 (10%)

Query: 261 LIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKY-AGVN 318
           L  +Y     +V ARR+FD   ++ D    N+MI AY      +E+  L+  ++      
Sbjct: 26  LAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFT 85

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKV 367
           PD  T   +  +CA   A+  G+ +  +    G   D++            G +D A K+
Sbjct: 86  PDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKL 145

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F++M   ++VSW A+I     +G    A  LF++M ++  AA      F  ++ A V  G
Sbjct: 146 FDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAA------FNTMIDAYVKLG 199

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            +   R+LFD M     +      ++ M+  Y+  G+L  A    + MPEK +     A+
Sbjct: 200 DMCSARKLFDEMPERSVV-----SWTIMIYGYSSNGNLDSARSLFDAMPEK-NLFSWNAM 253

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNS 515
           +   ++ K        ++L  E++S+ S
Sbjct: 254 ISGYRQNKQ---PYEALKLFHEMQSTTS 278


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 279/504 (55%), Gaps = 20/504 (3%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFI 127
           N A  +F  +  P+   +N ++ GL+      S +L+ + +M   G ++PD+ T   V  
Sbjct: 175 NDARKVFDAVPSPDTVLWNTLLAGLSG-----SEALEAFVRMAGAGSVRPDSTTLASVLP 229

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           + A +     G  VH+   K GL + +HV   LI++YA+CG ++ AR +FD +   DLV+
Sbjct: 230 AAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVT 289

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +N++ISGYS  G    +VELF  +      P   TLV+++      G   L   +   VV
Sbjct: 290 YNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVV 349

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K  +D N  + +AL  +Y +   +  ARR FDAM  K + +WNAMI+ YAQNGL+  A+ 
Sbjct: 350 KAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVA 409

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF +M+   V P+ +T+   LSACA +GAL LGKWV K  +   L  +++          
Sbjct: 410 LFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYV 469

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CGSI +A  +F+ M   N VSWN MIS    +G+  EAL L++ M        P   TF
Sbjct: 470 KCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMD--AHLHPTSSTF 527

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + VL AC H GLV EG  +F  M+S +G+ P  EH +CMVDL  RAG L EA++ +   P
Sbjct: 528 LSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFP 587

Query: 477 EK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           +  V   + GALLGAC   K+ D+++   Q L E+E  N+G YV+ S ++ + K + ++A
Sbjct: 588 KSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAA 647

Query: 536 KMRALMREKGVSKTPGCSWIGIDD 559
            +R   + + + KTPGC+ I I D
Sbjct: 648 VVRQEAKSRKLVKTPGCTLIEIGD 671



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 179/341 (52%), Gaps = 31/341 (9%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY---- 122
           D   A  LF ++  P+   +N +I G +      S S++L+ ++  +GL+P + T     
Sbjct: 271 DMECARHLFDRMEGPDLVTYNALISGYSINGMVGS-SVELFKELVGMGLRPSSSTLVALI 329

Query: 123 ----PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
               PF     A  L        H+ V K GLD +  VS +L T+Y R   +DSAR+ FD
Sbjct: 330 PVHSPFGHEPLAGCL--------HAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFD 381

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            + E+ + SWN+MISGY++ G  + AV LF +M+     P+ +T+ S L +C  LG L L
Sbjct: 382 AMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSL 441

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           GKWV   +   K++LN Y+ +ALIDMY KCG++  AR +FD+M NK+VV+WN MI+ Y  
Sbjct: 442 GKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGL 501

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLR 353
           +G   EA+ L+  M  A ++P   T + VL AC+  G +  G  V       Y    G+ 
Sbjct: 502 HGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIE 561

Query: 354 H-----DIF--CGSIDDALKVFEDMP--VTNEVSWNAMISA 385
           H     D+    G + +A ++  + P        W A++ A
Sbjct: 562 HCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGA 602



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 209/445 (46%), Gaps = 44/445 (9%)

Query: 58  LLIRIIDLKDFNYASL-LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           LL+R   L+      L L+    RP+ +  N ++R L T             +   L   
Sbjct: 63  LLLRYASLRSPPAHLLRLYRAFPRPDRFLRNSLLRSLPT------------LRADLLFPS 110

Query: 117 PDNFTYPFVFISCANLLALNHGVS-----------VHSSVFKIGLDEDDHVSHSLITMYA 165
           PD+F++ F   S A+  +   G+S           +H+     G   D+ V+ +L  +Y 
Sbjct: 111 PDSFSFAFAATSLASSCSRG-GISPPSAASAALRPLHALAVASGFAADNFVASALAKLYF 169

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR-EEEFLPDEITLV 224
              + + ARKVFD +   D V WN++++G S      EA+E F RM       PD  TL 
Sbjct: 170 TLSRGNDARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLA 225

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           SVL +  ++ +  +G+ V  F  K  +  + ++ + LI +Y KCG +  AR +FD M   
Sbjct: 226 SVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGP 285

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D+VT+NA+I+ Y+ NG+   ++ LF  +   G+ P   TL+ ++   +  G   L   + 
Sbjct: 286 DLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLH 345

Query: 345 KYASQRGLRHD---------IFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            +  + GL  +         ++C    +D A + F+ MP     SWNAMIS  A NG   
Sbjct: 346 AHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTE 405

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            A+ LF++M  +    RPN +T    LSAC   G +  G+ +  ++++   L       +
Sbjct: 406 MAVALFQQM--QALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANE-KLELNVYVMT 462

Query: 454 CMVDLYARAGHLSEAWDFVERMPEK 478
            ++D+Y + G ++EA    + M  K
Sbjct: 463 ALIDMYVKCGSIAEARCIFDSMDNK 487


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/500 (36%), Positives = 285/500 (57%), Gaps = 15/500 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F  + + N ++++ M+ G   A +    +  L+  M +    +   F    V  + 
Sbjct: 172 ARRMFDGMPQRNSFSWSTMVAGYA-AEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAV 230

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L L  G  +H  + K GL +   V +SL+TMYA+ G + +A  VF+  RER+ ++W+
Sbjct: 231 SVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWS 290

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GY++ G A  AV +F +M    F P E T V VL +  DLG L +GK   G +VK 
Sbjct: 291 AMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKL 350

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             ++  Y+ SAL+DMY KCG +  A+  FD +   D+V W AM++ + QNG   EA+ L+
Sbjct: 351 GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLY 410

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR---------HDIF--C 358
            RM   G+ P K T+   L ACA I AL+ GK +     + GL            ++  C
Sbjct: 411 ARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKC 470

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G+++D + VF  +P  + ++WN++IS  + NG  + AL LFE M  EG    P+++TFI 
Sbjct: 471 GNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEG--TIPDNITFIN 528

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC H GLVD G   F LM+  +GL P+ +HY+CMVD+ +RAG L EA DF+E +   
Sbjct: 529 ILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITID 588

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +   +LGAC+  ++ DV     + L+E+ + +S  Y++ S I+A+ + W+D  ++R
Sbjct: 589 HGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVR 648

Query: 539 ALMREKGVSKTPGCSWIGID 558
            LMR +GV+K PGCSW+ ++
Sbjct: 649 HLMRLRGVNKDPGCSWVELN 668



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 182/337 (54%), Gaps = 17/337 (5%)

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  SL+ MY + G +  AR++FD + +R+  SW++M++GY+    ++EA +LF  M EE
Sbjct: 154 YVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 213

Query: 215 -EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY-MGSALIDMYGKCGALV 272
                 E    +VL +      L++G+ + G +VK+ + L+F  + ++L+ MY K G + 
Sbjct: 214 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGL-LDFVSVENSLVTMYAKAGCMG 272

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            A  VF++   ++ +TW+AMIT YAQNG ++ A+ +F++M  AG  P + T +GVL+A +
Sbjct: 273 AAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASS 332

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +GAL +GK       + G    I+           CG I DA + F+ +   + V W A
Sbjct: 333 DLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 392

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           M+S    NG   EAL L+ RM KEG    P+  T    L AC     ++ G++L   +  
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEG--IIPSKSTIASGLRACAGIAALEPGKQLHTQI-V 449

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +GL   +   S +  +Y++ G+L +      R+P++
Sbjct: 450 KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 21/369 (5%)

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEI--RERDLVSWNSMI 192
           HG ++H+   K G      V++SLI  Y+   +  L +A  VFD+I    RD+ SWNS++
Sbjct: 30  HGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLL 89

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +  S+             +     LP   +  +   +         G        K    
Sbjct: 90  NPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSA 149

Query: 253 L-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           + N Y+ ++L++MY K G +  ARR+FD M  ++  +W+ M+  YA    S EA  LF  
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 209

Query: 312 M-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           M +       +     VLSA +    L +G+ +     + GL   +             G
Sbjct: 210 MLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAG 269

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +  A  VFE     N ++W+AMI+  A NG A  A+ +F +M   G    P + TF+GV
Sbjct: 270 CMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAG--FTPTEFTFVGV 327

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+A    G +  G++   LM    G   +    S +VD+YA+ G +++A +  +++ E V
Sbjct: 328 LNASSDLGALAVGKQAHGLM-VKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYE-V 385

Query: 480 DEIVLGALL 488
           D ++  A++
Sbjct: 386 DIVLWTAMV 394


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/554 (34%), Positives = 310/554 (55%), Gaps = 23/554 (4%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNF-----LLIRIIDLKDFNYASLLFHQISRPNE 83
           SL++  PS  +  Q+H   L   + +P+      L+   +     + A  +F ++S  + 
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDV 134

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
            A+N M+ GL     + + ++ L+ +M   G+  D  T   V   C  L      + +H 
Sbjct: 135 PAWNAMLSGLCRN-ARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHV 193

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K GLD++  V ++LI +Y + G L+ A+ VF  +  RDLV+WNS+ISG  + G    
Sbjct: 194 YAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAA 253

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSALI 262
           A+++F  MR     PD +TLVS+  +    GD    K +  +V++   D++    G+A++
Sbjct: 254 ALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIV 313

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDK 321
           DMY K   +  A+R+FD+M  +D V+WN +IT Y QNGL+NEA+  +  M K+ G+   +
Sbjct: 314 DMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQ 373

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T + VL A + +GAL  G  +   + + GL  D++           CG + +A+ +FE 
Sbjct: 374 GTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEK 433

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  +   WNA+IS L  +G   EAL LF RM +EG   +P+ VTF+ +L+AC HAGLVD
Sbjct: 434 MPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEG--IKPDHVTFVSLLAACSHAGLVD 491

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +GR  FD+M  ++ ++P ++HY+CM D+  RAG L EA++F++ MP K D  V GALLGA
Sbjct: 492 QGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGA 551

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   N ++ +   Q L E++  N G YV+ S ++A +  WD   ++R+L+R + + KTP
Sbjct: 552 CRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTP 611

Query: 551 GCSWIGIDDPKQSN 564
           G  W  I+  +  N
Sbjct: 612 G--WSSIEVKRSVN 623



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 207/378 (54%), Gaps = 20/378 (5%)

Query: 115 LKPDNFTYP-FVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDS 172
            +PD FT+P  +  + +N  A      +H+   ++GL       S SL+  Y R G++  
Sbjct: 66  FRPDGFTFPSLIRAAPSNASA----AQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISE 121

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A KVFDE+ ERD+ +WN+M+SG  +   A EAV LFGRM  E    D +T+ SVL  C  
Sbjct: 122 AYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVL 181

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           LGD VL   +  + VK+ +D   ++ +ALID+YGK G L  A+ VF  M  +D+VTWN++
Sbjct: 182 LGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I+   Q G +  A+ +F  M+ +GV+PD +TL+ + SA A  G     K +  Y  +RG 
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 353 R-HDIFCG-----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
              DI  G           +I+ A ++F+ MPV + VSWN +I+    NG A+EA+  + 
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M K  G  +    TF+ VL A  H G + +G R+  L S   GL       +C++DLYA
Sbjct: 362 HMQKHEG-LKAIQGTFVSVLPAYSHLGALQQGMRMHAL-SIKIGLNVDVYVGTCLIDLYA 419

Query: 461 RAGHLSEAWDFVERMPEK 478
           + G L+EA    E+MP +
Sbjct: 420 KCGKLAEAMLLFEKMPRR 437


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/463 (36%), Positives = 272/463 (58%), Gaps = 13/463 (2%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L+L  +MK  G++PD  T+  +  + A    L  G  VH  + + GL++D H+  SLI M
Sbjct: 232 LQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGM 291

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y +CG ++SA ++F+ +  +D++SW +MISG  +   A  AV +F RM +   +P   T+
Sbjct: 292 YLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATI 351

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
            SVL +C +LG   LG  V G++++ ++ L+    ++L+ MY KCG L  +  VFD M  
Sbjct: 352 ASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSR 411

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +D+V+WNA+++ +AQNG   +A++LFN M+ A   PD IT++ +L ACASIGAL  GKW+
Sbjct: 412 RDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWI 471

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             + ++  L   I            CG +  A K F+ MP  + VSW+++I+    +G+ 
Sbjct: 472 HNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKG 531

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
             AL ++      G   +PN V ++ +LSAC H GLVD+G   F  M+  FG+ P+ EH 
Sbjct: 532 ETALRMYSDFLHTG--IQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHR 589

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +C+VDL +RAG + EA+ F +RM  K    VLG LL AC+   N ++   V + ++ ++ 
Sbjct: 590 ACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKP 649

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +N+GNYV  +  +A++K WD   ++   M+   + K PG S+I
Sbjct: 650 ANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFI 692



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 255/468 (54%), Gaps = 25/468 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQISRP 81
           SL+K C S          H +++++     +++   +I+    F +   A  +F  +   
Sbjct: 53  SLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +  MI G  T   ++  +  +Y  M+R G++P + T   +    + +L L H   +
Sbjct: 113 NVVPWTTMI-GCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL---SGVLELVHLQCL 168

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V + G   D  +++S++ +Y +CG+++ A+ +F+ +  RD++SWNS++SGY+++G  
Sbjct: 169 HACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI 228

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +E ++L  RM+ +   PD+ T  S++ +      L +GK V G +++  ++ + ++ ++L
Sbjct: 229 REVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSL 288

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KCG +  A R+F+ M++KDV++W AMI+   QN  ++ A+ +F RM  + V P  
Sbjct: 289 IGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPST 348

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFED 370
            T+  VL+ACA +G+  LG  V  Y  ++ ++ DI            CG ++ +  VF+ 
Sbjct: 349 ATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDR 408

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWNA++S  A NG   +ALLLF  M K     RP+ +T + +L AC   G + 
Sbjct: 409 MSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRK--ARQRPDSITVVSLLQACASIGALH 466

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +G+ + + ++ S  L P     + +VD+Y++ G L  A    +RMP++
Sbjct: 467 QGKWIHNFVTKSC-LGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQ 513



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 208/415 (50%), Gaps = 30/415 (7%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P   ++N +I  L+TA   +   L  Y  M      PD  T+P +  +C +L   +HG+S
Sbjct: 11  PATKSYNAIINRLSTA-GAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H  V   G   D +++ SLI  Y++ G   SARKVFD + +R++V W +MI  Y++ G 
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
              A  ++  MR +   P  +T++ +L    +L  L   + +   V++     +  + ++
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANS 186

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           ++++Y KCG +  A+ +F+ M  +DV++WN++++ YAQ G   E + L  RMK  G+ PD
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPD 246

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFE 369
           + T   ++SA A    L +GK V  +  + GL  D           + CG+++ A ++FE
Sbjct: 247 QQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFE 306

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M   + +SW AMIS L  N  A  A+ +F RM K      P+  T   VL+AC   G  
Sbjct: 307 GMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKS--RVMPSTATIASVLAACAELG-- 362

Query: 430 DEGRRLFDLMSSSFGLIPKSE------HYSCMVDLYARAGHLSEAWDFVERMPEK 478
                 F L +S  G I +          + +V +YA+ GHL ++    +RM  +
Sbjct: 363 -----SFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRR 412



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 61/311 (19%)

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           R   + +N    ++NA+I   +  G   + ++ ++ M      PD  T   ++ AC S+ 
Sbjct: 3   RAKPSFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLD 62

Query: 336 ALDLG------KWVDKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMIS 384
               G        VD Y+S   +   +       G    A KVF+ M   N V W  MI 
Sbjct: 63  LFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIG 122

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA--------CVHA---------- 426
                G    A  ++  M ++G   +P+ VT +G+LS         C+HA          
Sbjct: 123 CYTRAGEHDVAFSMYNIMRRQG--IQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSD 180

Query: 427 --------------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
                         G V++ + LF+LM +   +      ++ +V  YA+ G++ E    +
Sbjct: 181 VALANSMLNVYCKCGRVEDAQALFELMDARDVI-----SWNSLVSGYAQLGNIREVLQLL 235

Query: 473 ERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLL--------EIESSNSGNYVIS 521
            RM     + D+   G+L+ A   Q    V + V   +L         IE+S  G Y+  
Sbjct: 236 IRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKC 295

Query: 522 SKIFANLKMWD 532
             + +  ++++
Sbjct: 296 GNVNSAFRIFE 306


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/463 (36%), Positives = 272/463 (58%), Gaps = 13/463 (2%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L+L  +MK  G++PD  T+  +  + A    L  G  VH  + + GL++D H+  SLI M
Sbjct: 232 LQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGM 291

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y +CG ++SA ++F+ +  +D++SW +MISG  +   A  AV +F RM +   +P   T+
Sbjct: 292 YLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATI 351

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
            SVL +C +LG   LG  V G++++ ++ L+    ++L+ MY KCG L  +  VFD M  
Sbjct: 352 ASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSR 411

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +D+V+WNA+++ +AQNG   +A++LFN M+ A   PD IT++ +L ACASIGAL  GKW+
Sbjct: 412 RDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWI 471

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             + ++  L   I            CG +  A K F+ MP  + VSW+++I+    +G+ 
Sbjct: 472 HNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKG 531

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
             AL ++      G   +PN V ++ +LSAC H GLVD+G   F  M+  FG+ P+ EH 
Sbjct: 532 ETALRMYSDFLHTG--IQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHR 589

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           +C+VDL +RAG + EA+ F +RM  K    VLG LL AC+   N ++   V + ++ ++ 
Sbjct: 590 ACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKP 649

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +N+GNYV  +  +A++K WD   ++   M+   + K PG S+I
Sbjct: 650 ANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFI 692



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 255/468 (54%), Gaps = 25/468 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQISRP 81
           SL+K C S          H +++++     +++   +I+    F +   A  +F  +   
Sbjct: 53  SLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +  MI G  T   ++  +  +Y  M+R G++P + T   +    + +L L H   +
Sbjct: 113 NVVPWTTMI-GCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL---SGVLELVHLQCL 168

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V + G   D  +++S++ +Y +CG+++ A+ +F+ +  RD++SWNS++SGY+++G  
Sbjct: 169 HACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI 228

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +E ++L  RM+ +   PD+ T  S++ +      L +GK V G +++  ++ + ++ ++L
Sbjct: 229 REVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSL 288

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KCG +  A R+F+ M++KDV++W AMI+   QN  ++ A+ +F RM  + V P  
Sbjct: 289 IGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPST 348

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T+  VL+ACA +G+  LG  V  Y  ++ ++ DI            CG ++ +  VF+ 
Sbjct: 349 ATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDR 408

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWNA++S  A NG   +ALLLF  M K     RP+ +T + +L AC   G + 
Sbjct: 409 MSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRK--ARQRPDSITVVSLLQACASIGALH 466

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +G+ + + ++ S  L P     + +VD+Y++ G L  A    +RMP++
Sbjct: 467 QGKWIHNFVTKSC-LGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQ 513



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 30/415 (7%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P   ++N +I  L+TA   +   L  Y  M      PD  T+P +  +C +L   +HG+S
Sbjct: 11  PATKSYNAIINRLSTA-GAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H  V   G   D +++ SLI  Y++ G   SARKVFD + +R++V W +MI  Y++ G 
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
              A  ++  MR +   P  +T++ +L     + +LV  + +   V++     +  + ++
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSG---VLELVHLQCLHACVIQYGFGSDVALANS 186

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           ++++Y KCG +  A+ +F+ M  +DV++WN++++ YAQ G   E + L  RMK  G+ PD
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPD 246

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFE 369
           + T   ++SA A    L +GK V  +  + GL  D           + CG+++ A ++FE
Sbjct: 247 QQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFE 306

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M   + +SW AMIS L  N  A  A+ +F RM K      P+  T   VL+AC   G  
Sbjct: 307 GMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKS--RVMPSTATIASVLAACAELG-- 362

Query: 430 DEGRRLFDLMSSSFGLIPKSE------HYSCMVDLYARAGHLSEAWDFVERMPEK 478
                 F L +S  G I +          + +V +YA+ GHL ++    +RM  +
Sbjct: 363 -----SFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRR 412



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 61/311 (19%)

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           R   + +N    ++NA+I   +  G   + ++ ++ M      PD  T   ++ AC S+ 
Sbjct: 3   RAKPSFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLD 62

Query: 336 ALDLG------KWVDKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMIS 384
               G        VD Y+S   +   +       G    A KVF+ M   N V W  MI 
Sbjct: 63  LFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIG 122

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA--------CVHA---------- 426
                G    A  ++  M ++G   +P+ VT +G+LS         C+HA          
Sbjct: 123 CYTRAGEHDVAFSMYNIMRRQG--IQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSD 180

Query: 427 --------------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
                         G V++ + LF+LM +   +      ++ +V  YA+ G++ E    +
Sbjct: 181 VALANSMLNVYCKCGRVEDAQALFELMDARDVI-----SWNSLVSGYAQLGNIREVLQLL 235

Query: 473 ERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLL--------EIESSNSGNYVIS 521
            RM     + D+   G+L+ A   Q    V + V   +L         IE+S  G Y+  
Sbjct: 236 IRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKC 295

Query: 522 SKIFANLKMWD 532
             + +  ++++
Sbjct: 296 GNVNSAFRIFE 306


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 183/483 (37%), Positives = 271/483 (56%), Gaps = 16/483 (3%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N  +R L    Q +  +L LY QM R G +P+ FT+PF   SCA L     G   H  +
Sbjct: 17  WNTQLRELAKRCQ-FLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE-IRERDL-VSWNSMISGYSKMGYAKE 203
            K+G   +  V   LI+MY +   +D+ARKVF+E    R L V +N+++SGY       E
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           AV LF +M EE    + +TL+ ++ +C    +L LG  +    +K   D +  + +  I 
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFIT 195

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG++  A+++FD M  K +++WNAM++ YAQNGL+   + L+  M   GV+PD +T
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 255

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
           L+GVLS+CA++GA  +G  V+      G   + F           CG++  A  VF+ MP
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 315

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
               VSW A+I     +G    A+ LF+ M + G    P+   F+ VLSAC HAGL D+G
Sbjct: 316 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG--IEPDGTAFVCVLSACSHAGLTDQG 373

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
              F +M  ++ L P  EHYSCMVDL  RAG L EA   +E MP K D  V GALLGAC+
Sbjct: 374 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACK 433

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
             KN ++++   + ++E+E  N G YV+ S I++N        ++R +M+EK + K PGC
Sbjct: 434 IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGC 493

Query: 553 SWI 555
           S++
Sbjct: 494 SYV 496



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 177/341 (51%), Gaps = 16/341 (4%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           FH  SR     +N ++ G  +   K S ++ L+ QM   G+  ++ T   +  +C + + 
Sbjct: 111 FH--SRKLTVCYNALVSGYVSN-SKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPIN 167

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G S+H S  K G D D  V +  ITMY +CG ++ A+K+FDE+  + L+SWN+M+SG
Sbjct: 168 LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSG 227

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y++ G A   +EL+  M      PD +TLV VL SC +LG   +G  VE  +  +    N
Sbjct: 228 YAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSN 287

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++ +ALI+MY +CG L  A+ VFD M  + +V+W A+I  Y  +G    A+ LF  M  
Sbjct: 288 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 347

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDK-----YASQRGLRH-----DIF--CGSID 362
           +G+ PD    + VLSAC+  G  D G    K     Y  + G  H     D+    G + 
Sbjct: 348 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 407

Query: 363 DALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERM 402
           +A  + E MP+  +   W A++ A   +     A L FER+
Sbjct: 408 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV 448


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 298/538 (55%), Gaps = 26/538 (4%)

Query: 41  QQIHTQML---INFIQKPNFL---LIRIIDLKDFNYASLLFHQISRPNEYAFNVMI---R 91
           +QIH  +L   I + ++  FL   L R      F YA  L  QI  P+   ++ ++    
Sbjct: 19  KQIHCLVLTSPIFYTRRDLFLSRLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFS 78

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD 151
           G  T  ++ S     Y QM+R G+ P   T+P +  +   L   N     H+ + K G D
Sbjct: 79  GRVTLNRRLS--FLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDAN-PFQFHAHILKFGFD 135

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
            D  V +SLI+ Y+ CG  +   +VFD   ++D+VSW +MI G+ +   + EA+  F  M
Sbjct: 136 SDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEM 195

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGSALIDMYGKCGA 270
           +      +E+T+VSVL +     D+  G+ + GF ++  ++  + ++GS+L+DMYGKCG 
Sbjct: 196 KRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGC 255

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
              A++VFD M +++VVTW A+I  Y Q     + + +F  M  + V P++ TL  VLSA
Sbjct: 256 YDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSA 315

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSW 379
           CA +GAL  G+ V  Y  +  +  +             CG +++A+ VFE +   N  +W
Sbjct: 316 CAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTW 375

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
            AMI+  A +G A  A+ LF  M        PN+VTFI VLSAC H GLV+EGRRLF  M
Sbjct: 376 TAMINGFAAHGYAIGAVDLFHTML--SSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSM 433

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
              F L PK++HY+CMVDL+ R G L EA   +ERMP +    V GAL G+C   K+ ++
Sbjct: 434 KERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYEL 493

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            +     +++++ S+SG Y + + +++  + WDD A++R  M+++ V K+PGCSWI +
Sbjct: 494 GKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEV 551


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 307/554 (55%), Gaps = 28/554 (5%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF---LLIRIIDLKDFNYASLLFHQIS 79
           ++   ++L+K+C + + ++ +H  +L + +  P+    L+ +   L   ++A  LF    
Sbjct: 3   MKANCIALIKQCVTLEALKSLHASILKSHLH-PHLCTSLIAQYASLGSISHAYALFSTSH 61

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N + +N +IR  +       +SL+LY +M +LG++  NFT+PF+  +C  L     G 
Sbjct: 62  SSNVFLWNHIIRAFSNTPHS-RNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 120

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
             H+ V   G + D  V++SL+ MY R G  D +R+VF+ + ER++VSW+SM+  Y+  G
Sbjct: 121 RAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNG 180

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCG---DLGDLVLGKWVEGFVVKNKMDLNFY 256
             +E + LF RM  E   P+  ++V+ +       +  D          V+ N +D +  
Sbjct: 181 RYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCR------VVIDNGLDSDQS 234

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +A + MY +CG +  ARR F  +++KD+V W +MI AY Q  L   A+ LF +MK  G
Sbjct: 235 VQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLG 294

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           + PD +TL+ ++ A +++ +  L ++V    ++   ++ I            CG+++ A 
Sbjct: 295 IVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYAR 354

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K F+ M   N +SW+ MIS    +G   EAL LF++M     + +P+ + F+ VLSAC H
Sbjct: 355 KCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMK---ASIKPDHIAFVMVLSACSH 411

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            GL+ EG   F  M+  FG+ P++EHY+CMVDL  RAG LSEA  F+ERMP   D  V G
Sbjct: 412 GGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWG 471

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           ALLGAC+   N + ++   + L  +++ N G Y++ S I+A+     ++  +RALM+ +G
Sbjct: 472 ALLGACRIHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRG 531

Query: 546 VSKTPGCSWIGIDD 559
           V KT G + I I +
Sbjct: 532 VRKTVGHTIIEIKN 545


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 180/499 (36%), Positives = 291/499 (58%), Gaps = 15/499 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F +++  +  ++N +I G  +        L ++ QM   G++ D  T   VF  CA
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLA-EKGLSVFVQMLFSGIEIDLATIVSVFAGCA 307

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +   ++ G +VH    K     +D   ++L+ MY++CG LDSA+ VF E+  R +VS+ S
Sbjct: 308 DSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTS 367

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+GY++ G A EAV+LF  M EE   PD  T+ +VL  C     L  GK V  ++ +N 
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEND 427

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           M  + ++ +AL+DMY KCG++  A  VF  M  KD+++WN +I  Y++N  +NEA+ LFN
Sbjct: 428 MGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFN 487

Query: 311 RMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RH------DIF--C 358
            +      +PD+ T+  VL ACAS+ A D G+ +  Y  + G    RH      D++  C
Sbjct: 488 LLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G++  A  +F+D+   + VSW  MI+    +G   EA+ LF +M + G    P++++F+ 
Sbjct: 548 GALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG--IEPDEISFVS 605

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC H+GLVDEG R F++M     + P  EHY+C+VD+ AR G+LS+A+ F+E MP  
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIP 665

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D  + GALL  C+   +  +++RV + + E+E  N+G YV+ + I+A  + W++  ++R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLR 725

Query: 539 ALMREKGVSKTPGCSWIGI 557
             + ++G+ K PGCSWI I
Sbjct: 726 KRIGQRGLRKNPGCSWIEI 744



 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 242/459 (52%), Gaps = 25/459 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLL---------IRIIDLKDFNYASLLFHQ 77
           L S+L+ C  +K+++    + + NFI+   F+L         +   +  D   AS +F Q
Sbjct: 97  LCSVLQLCADSKSLKD--GKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQ 154

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +       +N+++  L  +   +S S+ L+ +M   G++ D++T+  V  S ++L ++N 
Sbjct: 155 VKIEKALFWNILMNELAKSGD-FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNG 213

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H  + K G  E + V +SL+  Y +  ++DSARKVFDE+ ERD++SWNS+I+GY  
Sbjct: 214 GEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G A++ + +F +M       D  T+VSV   C D   + LG+ V  F VK         
Sbjct: 274 NGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRF 333

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + L+DMY KCG L  A+ VF  M  + VV++ +MI  YA+ GL+ EA+ LF  M+  G+
Sbjct: 334 CNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
           +PD  T+  VL+ CA    LD GK V ++  +  +  DIF           CGS+ +A  
Sbjct: 394 SPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAEL 453

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF +M V + +SWN +I   + N  A+EAL LF  +  E   + P++ T   VL AC   
Sbjct: 454 VFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFS-PDERTVACVLPACASL 512

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
              D+GR +   +  + G        + +VD+YA+ G L
Sbjct: 513 SAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGAL 550



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 163/373 (43%), Gaps = 50/373 (13%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R +   N+ +  + + G  K AV+L     + +  P   TL SVL  C D   L  GK 
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V+ F+  N   L+  +GS L  MY  CG L  A RVFD +  +  + WN ++   A++G 
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
            + +I LF +M  +GV  D  T   V  + +S+ +++ G+ +  Y  + G       G+ 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNS 235

Query: 361 ----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                     +D A KVF++M   + +SWN++I+    NG A + L +F +M   G    
Sbjct: 236 LVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG--IE 293

Query: 411 PNDVTFIGVLSACVHAGLVDEGR-------------------RLFDLMSSSFGLIPKSE- 450
            +  T + V + C  + L+  GR                    L D M S  G +  ++ 
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLD-MYSKCGDLDSAKV 352

Query: 451 -----------HYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKN 496
                       Y+ M+  YAR G   EA    E M E+    D   + A+L  C + + 
Sbjct: 353 VFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRL 412

Query: 497 TDVSQRVMQLLLE 509
            D  +RV + + E
Sbjct: 413 LDEGKRVHEWIKE 425


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 312/604 (51%), Gaps = 82/604 (13%)

Query: 32  KKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEY 84
           K C  T+   Q   +H  ++ +      FL   +I+    L +  YA  +F ++ +PN +
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 85  AFNVMIRG------LTTAWQKYS------------------------HSLKLYYQMKRLG 114
           ++N M+        L+T  + +S                         ++K Y  M + G
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 115 -LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
            L  +  T+  + +  ++   ++ G  +H  + K G      V  SL+ MYA+ G +  A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 174 RKVFDEI-------------------------------RERDLVSWNSMISGYSKMGYAK 202
            +VFDE+                               +ERD +SW +MI+G  + G   
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA++LF  MR+E    D+ T  SVL +CG L  L  GK +   ++++  + N ++GSAL+
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALV 312

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KC ++  A  VF  M NK+VV+W AM+  Y QNG S EA+ +F  M+  G+ PD  
Sbjct: 313 DMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL  V+S+CA++ +L+ G      A   GL   I            CGSI+D+ ++F++M
Sbjct: 373 TLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEM 432

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              +EVSW A++S  A  G+A+E + LFERM  +G   +P+ VTFI VLSAC  AGLV+ 
Sbjct: 433 SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQG--LKPDAVTFIAVLSACSRAGLVER 490

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G++ F+ M    G+IP S+HY+CM+DL+ RAG L EA +F+ +MP   D I    LL +C
Sbjct: 491 GQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSC 550

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N ++ +   + LLE++  N   Y++ S I+A    W + A++R  MREKG  K PG
Sbjct: 551 RLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPG 610

Query: 552 CSWI 555
            SWI
Sbjct: 611 FSWI 614


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 304/543 (55%), Gaps = 20/543 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYA 85
           +LK C S    +++H  +     +   F+   ++ L       + A  +F  +   +  +
Sbjct: 130 ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS 189

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MI G        + +L +  +MK  G+K D  T   +   CA    + +GV +H  V
Sbjct: 190 WNAMISGFCQNGNA-AGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K GLD D  VS++LI MY++ G+L  A+ VFD++  RDLVSWNS+I+ Y +      A+
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDM 264
             F  M+     PD +T+VS+      L D  + + + GFV++ + +D +  +G+AL++M
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNM 368

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKIT 323
           Y K G +  A  VFD +  KD ++WN ++T Y QNGL++EAI  +N M+      P++ T
Sbjct: 369 YAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGT 428

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
            + ++ A + +GAL  G  +     +  L  D+F           CG ++DA+ +F ++P
Sbjct: 429 WVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP 488

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
               V WNA+I++L  +GR  EAL LF+ M  E    + + +TF+ +LSAC H+GLVDEG
Sbjct: 489 RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAE--RVKADHITFVSLLSACSHSGLVDEG 546

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           ++ FD+M   +G+ P  +HY CMVDL  RAG+L +A++ V  MP + D  + GALL AC+
Sbjct: 547 QKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACK 606

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++       LLE++S N G YV+ S I+AN + W+   K+R+L R++G+ KTPG 
Sbjct: 607 IYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGW 666

Query: 553 SWI 555
           S +
Sbjct: 667 SSV 669



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 248/470 (52%), Gaps = 30/470 (6%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLL-IRIIDL----KDFNYASLLFHQISRPNE 83
           +L   C +    +++H  +L+ F +  N +L  ++I+L     D + +   F  I + N 
Sbjct: 27  ALFNSCVNVNATKKLHALLLV-FGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNI 85

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRL----GLKPDNFTYPFVFISCANLLALNHGV 139
           +++N +I      + KY  ++    Q+  +     L+PD +T+P +  +C +L+    G 
Sbjct: 86  FSWNSIISAYVR-FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGK 141

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH  VFK+G ++D  V+ SL+ +Y+R G LD A KVF ++  +D+ SWN+MISG+ + G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A  A+ +  RM+ E    D IT+ S+L  C    D++ G  +   V+K+ +D + ++ +
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALI+MY K G L  A+ VFD M  +D+V+WN++I AY QN   + A+  F  M+  G+ P
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKV 367
           D +T++ + S  + +    + + +  +  +R  L  D+  G+           ++ A  V
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ +P  + +SWN +++    NG A EA+  +  M +E     PN  T++ ++ A  H G
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM-EECRDTIPNQGTWVSIIPAYSHVG 440

Query: 428 LVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
            + +G ++   L+ +S  L       +C++DLY + G L +A      +P
Sbjct: 441 ALQQGMKIHAKLIKNSLYL--DVFVATCLIDLYGKCGRLEDAMSLFYEIP 488


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 191/505 (37%), Positives = 283/505 (56%), Gaps = 17/505 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A L+F  +   +  ++N M+ GL  A     H +  ++ QM++ GL PD+ TY  +  + 
Sbjct: 477 ARLVFDGMCDRDVISWNAMMGGL--AQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTH 534

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
            +  AL     VH    + GL  D  V  + I MY RCG +D AR +FD++  R + +WN
Sbjct: 535 GSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWN 594

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI G ++    +EA+ LF +M+ E F+PD  T +++L +  D   L   K V       
Sbjct: 595 AMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDA 654

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            + ++  +G+AL+  Y KCG +  A++VFD MV ++V TW  MI   AQ+G  ++A   F
Sbjct: 655 GL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHF 713

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M   G+ PD  T + +LSACAS GAL+  K V  +A   GL  D+            C
Sbjct: 714 LQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKC 773

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GSIDDA  VF+DM   +  SW  MI  LA +GR  EAL  F +M  EG   +PN  +++ 
Sbjct: 774 GSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEG--FKPNGYSYVA 831

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL+AC HAGLVDEGRR F  M+  +G+ P  EHY+CMVDL  RAG L EA  F+  MP +
Sbjct: 832 VLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIE 891

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D+   GALLGAC    N ++++   +  L+++  ++  YV+ S I+A    W+    +R
Sbjct: 892 PDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVR 951

Query: 539 ALMREKGVSKTPGCSWIGIDDPKQS 563
           ++M+ KG+ K PG SWI +D+   S
Sbjct: 952 SMMQRKGIRKEPGRSWIEVDNRIHS 976



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/526 (28%), Positives = 265/526 (50%), Gaps = 41/526 (7%)

Query: 28  LSLLKKCPSTKTV---QQIHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQISR 80
           +++L++C   + +   +Q+H  ++ + +++     N LL   I       A  +F ++ +
Sbjct: 122 VNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLK 181

Query: 81  PNEYAFNVMIRGLTTAWQKYSHS---LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
            N Y +  MI G    + +Y H+   +++Y +M++   +P+  TY  +  +C   + L  
Sbjct: 182 KNIYIWTTMIGG----YAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKW 237

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+ + + G   D  V  +L+ MY +CG ++ A+ +FD++ ER+++SW  MI G + 
Sbjct: 238 GKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAH 297

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  +EA  LF +M+ E F+P+  T VS+L +    G L   K V    V   + L+  +
Sbjct: 298 YGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRV 357

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+ MY K G++  AR VFD M  +D+ +W  MI   AQ+G   EA  LF +M+  G 
Sbjct: 358 GNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGC 417

Query: 318 NPDKITLIGVL--SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
            P+  T + +L  SA AS  AL+  K V K+A + G   D+            CGSIDDA
Sbjct: 418 LPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDA 477

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF+ M   + +SWNAM+  LA NG  HEA  +F +M +EG    P+  T++ +L+   
Sbjct: 478 RLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEG--LVPDSTTYLSLLNT-- 533

Query: 425 HAGLVDEGRRLFDLMSSSF--GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
             G  D    + ++   +   GLI      S  + +Y R G + +A    +++  +    
Sbjct: 534 -HGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVT 591

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
              A++G   +Q+     +  + L L+++      ++  +  F N+
Sbjct: 592 TWNAMIGGAAQQR---CGREALSLFLQMQRE---GFIPDATTFINI 631



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/420 (32%), Positives = 220/420 (52%), Gaps = 16/420 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF--IS 128
           A ++F  ++  + +++ VMI GL     +   +  L+ QM+R G  P+  TY  +    +
Sbjct: 374 ARVVFDGMTERDIFSWTVMIGGLAQH-GRGQEAFSLFLQMQRNGCLPNLTTYLSILNASA 432

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            A+  AL     VH    + G   D  + ++LI MYA+CG +D AR VFD + +RD++SW
Sbjct: 433 IASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISW 492

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+M+ G ++ G   EA  +F +M++E  +PD  T +S+L + G    L     V    V+
Sbjct: 493 NAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVE 552

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +  +F +GSA I MY +CG++  AR +FD +  + V TWNAMI   AQ     EA+ L
Sbjct: 553 TGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSL 612

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG---------LRHDIF-C 358
           F +M+  G  PD  T I +LSA     AL+  K V  +A+  G         L H    C
Sbjct: 613 FLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKC 672

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G++  A +VF+DM   N  +W  MI  LA +G  H+A   F +M +EG    P+  T++ 
Sbjct: 673 GNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG--IVPDATTYVS 730

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +LSAC   G ++  + + +  + S GL+      + +V +YA+ G + +A    + M E+
Sbjct: 731 ILSACASTGALEWVKEVHN-HAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVER 789



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 212/389 (54%), Gaps = 15/389 (3%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+  D+F+Y  +   C     +     VH  + K G++++ +V++ L+ +Y RCG+L  A
Sbjct: 113 GIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCA 172

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R+VFD++ ++++  W +MI GY++ G+A++A+ ++ +MR+E   P+EIT +S+L +C   
Sbjct: 173 RQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCP 232

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
            +L  GK +   ++++    +  + +AL++MY KCG++  A+ +FD MV ++V++W  MI
Sbjct: 233 VNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMI 292

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
              A  G   EA  LF +M+  G  P+  T + +L+A AS GAL+  K V  +A   GL 
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 354 HDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D+             GSIDDA  VF+ M   +  SW  MI  LA +GR  EA  LF +M
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVD-EGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
            + G    PN  T++ +L+A   A     E  ++    +   G I      + ++ +YA+
Sbjct: 413 QRNG--CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAK 470

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G + +A    + M ++ D I   A++G 
Sbjct: 471 CGSIDDARLVFDGMCDR-DVISWNAMMGG 498



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 18/309 (5%)

Query: 185 LVSWNSMISGYSKMGY----AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           LV  N+ + G ++  +    AK+AV +     ++    D  + V++L  C    D++L K
Sbjct: 79  LVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAK 138

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V   ++K+ M+ N Y+ + L+ +Y +CG L  AR+VFD ++ K++  W  MI  YA+ G
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYG 198

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            + +A+ ++++M+     P++IT + +L AC     L  GK +  +  Q G + D+    
Sbjct: 199 HAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVET 258

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CGSI+DA  +F+ M   N +SW  MI  LA  GR  EA  LF +M +EG   
Sbjct: 259 ALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI- 317

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            PN  T++ +L+A   AG ++  + +    + + GL       + +V +YA++G + +A 
Sbjct: 318 -PNSYTYVSILNANASAGALEWVKEVHS-HAVNAGLALDLRVGNALVHMYAKSGSIDDAR 375

Query: 470 DFVERMPEK 478
              + M E+
Sbjct: 376 VVFDGMTER 384


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 189/510 (37%), Positives = 287/510 (56%), Gaps = 23/510 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N  +L    + + + +++N +I  L  +    + +L  +  M++L L P   ++P    +
Sbjct: 27  NLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEALLAFSSMRKLSLYPTRSSFPCAIKA 85

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C++L  +  G   H   F  G   D  VS +LI MY+ CGKL+ ARKVFDEI +R++VSW
Sbjct: 86  CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEE------FLPDEITLVSVLGSCGDLGDLVLGKWV 242
            SMI GY   G A +AV LF  +  +E         D + LVSV+ +C  +    L + +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCG--ALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
             FV+K   D    +G+ L+D Y K G   +  AR++FD +V+KD V++N++++ YAQ+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 301 LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           +SNEA  +F R+ K   V  + ITL  VL A +  GAL +GK +     + GL  D+   
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG ++ A K F+ M   N  SW AMI+    +G A +AL LF  M   G  
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-- 383

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            RPN +TF+ VL+AC HAGL  EG R F+ M   FG+ P  EHY CMVDL  RAG L +A
Sbjct: 384 VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
           +D ++RM  K D I+  +LL AC+  KN ++++  +  L E++SSN G Y++ S I+A+ 
Sbjct: 444 YDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADA 503

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             W D  ++R +M+ +G+ K PG S + ++
Sbjct: 504 GRWKDVERVRMIMKNRGLVKPPGFSLLELN 533


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 304/543 (55%), Gaps = 20/543 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYA 85
           +LK C S    +++H  +     +   F+   ++ L       + A  +F  +   +  +
Sbjct: 130 ILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS 189

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MI G        + +L +  +MK  G+K D  T   +   CA    + +GV +H  V
Sbjct: 190 WNAMISGFCQNGNA-AGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K GLD D  VS++LI MY++ G+L  A+ VFD++  RDLVSWNS+I+ Y +      A+
Sbjct: 249 LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDM 264
             F  M+     PD +T+VS+      L D  + + + GFV++ + +D +  +G+AL++M
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNM 368

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKIT 323
           Y K G +  A  VFD +  KD ++WN ++T Y QNGL++EAI  +N M+      P++ T
Sbjct: 369 YAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGT 428

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
            + ++ A + +GAL  G  +     +  L  D+F           CG ++DA+ +F ++P
Sbjct: 429 WVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP 488

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
               V WNA+I++L  +GR  EAL LF+ M  E    + + +TF+ +LSAC H+GLVDEG
Sbjct: 489 RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAE--RVKADHITFVSLLSACSHSGLVDEG 546

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           ++ FD+M   +G+ P  +HY CMVDL  RAG+L +A++ V  MP + D  + GALL AC+
Sbjct: 547 QKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACK 606

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++       LLE++S N G YV+ S I+AN + W+   K+R+L R++G+ KTPG 
Sbjct: 607 IYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGW 666

Query: 553 SWI 555
           S +
Sbjct: 667 SSV 669



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 248/470 (52%), Gaps = 30/470 (6%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLL-IRIIDL----KDFNYASLLFHQISRPNE 83
           +L   C +    +++H  +L+ F +  N +L  ++I+L     D + +   F  I + N 
Sbjct: 27  ALFNSCVNVNATKKLHALLLV-FGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNI 85

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRL----GLKPDNFTYPFVFISCANLLALNHGV 139
           +++N +I      + KY  ++    Q+  +     L+PD +T+P +  +C +L+    G 
Sbjct: 86  FSWNSIISAYVR-FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLV---DGK 141

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH  VFK+G ++D  V+ SL+ +Y+R G LD A KVF ++  +D+ SWN+MISG+ + G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A  A+ +  RM+ E    D IT+ S+L  C    D++ G  +   V+K+ +D + ++ +
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALI+MY K G L  A+ VFD M  +D+V+WN++I AY QN   + A+  F  M+  G+ P
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKV 367
           D +T++ + S  + +    + + +  +  +R  L  D+  G+           ++ A  V
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ +P  + +SWN +++    NG A EA+  +  M +E     PN  T++ ++ A  H G
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM-EECRDTIPNQGTWVSIIPAYSHVG 440

Query: 428 LVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
            + +G ++   L+ +S  L       +C++DLY + G L +A      +P
Sbjct: 441 ALQQGMKIHAKLIKNSLYL--DVFVATCLIDLYGKCGRLEDAMSLFYEIP 488


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 299/552 (54%), Gaps = 23/552 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           LL+   +  S K   QIHTQ++IN      FL   +I+L       N A LLF  I+  +
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLF-SITH-H 205

Query: 83  EYAFNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            +   V    L T    ++    +L L+ QM+  G  P+ FT+  +  + A  + + HG 
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQ 265

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +HS + K G D +  V  +L+ MYA+C  + SA +VFD++ ER+LVSWNSMI G+    
Sbjct: 266 QLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNN 325

Query: 200 YAKEAVELFGR-MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               AV +F   +RE+  +P+E+++ SVL +C ++G L  G+ V G VVK  +    Y+ 
Sbjct: 326 LYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVM 385

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L+DMY KC       ++F  + ++DVVTWN ++  + QN    EA   F  M+  G+ 
Sbjct: 386 NSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGIL 445

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD+ +   VL + AS+ AL  G  +     + G   ++            CGS+ DA +V
Sbjct: 446 PDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQV 505

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           FE +   N +SW AMISA   +G A++ + LFE M  EG    P+ VTF+ VLSAC H G
Sbjct: 506 FEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG--IEPSHVTFVCVLSACSHTG 563

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            V+EG   F+ M     + P  EHY+CMVDL  RAG L EA  F+E MP K    V GAL
Sbjct: 564 RVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGAL 623

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LGAC+K  N  + +   + L E+E  N GNYV+ + +       +++ ++R LM   GV 
Sbjct: 624 LGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVR 683

Query: 548 KTPGCSWIGIDD 559
           K PGCSWI + +
Sbjct: 684 KEPGCSWIDVKN 695


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 290/511 (56%), Gaps = 24/511 (4%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS---LKLYYQMKRLGLKPDNFTYP 123
           D   A  +F ++   N   + +MI    T +Q+   S   + L+  M   G  PD FT  
Sbjct: 94  DLESAYKVFDRMPDRNVVTWTLMI----TRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLS 149

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC---GKLDSARKVFDEI 180
            V  +CA +  L+ G   H  V K GLD D  V  SL+ MYA+C   G +D ARKVFD +
Sbjct: 150 GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRM 209

Query: 181 RERDLVSWNSMISGYSKMGYA-KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
              +++SW ++I+GY + G   +EA+ELF  M + +  P+  T  SVL +C +L D+ LG
Sbjct: 210 PVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLG 269

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + V   VVK ++     +G++LI MY +CG +  AR+ FD +  K++V++N ++ AYA++
Sbjct: 270 EQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKS 329

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
             S EA  LFN ++ AG   +  T   +LS  +SIGA+  G+ +     + G + ++   
Sbjct: 330 LNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHIC 389

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG+I+ A +VF +M   N +SW +MI+  A +G A  AL  F +M + G  
Sbjct: 390 NALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAG-- 447

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             PN+VT+I VLSAC H GL+ EG + F  M    G++P+ EHY+C+VDL  R+GHL EA
Sbjct: 448 VSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEA 507

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
            + V  MP K D +VL   LGAC+   N D+ +   +++LE +  +   Y++ S + A+ 
Sbjct: 508 MELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASA 567

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             W++ A++R  M+E+ ++K  GCSWI +++
Sbjct: 568 GQWEEVAEIRKKMKERNLTKEAGCSWIEVEN 598



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 217/400 (54%), Gaps = 26/400 (6%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HV 156
           +K   ++  ++ M   G  P+ + +  VF +C+N   ++ G  +   + K G  E D  V
Sbjct: 21  EKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCV 80

Query: 157 SHSLITMYARC-GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
             +LI M+ +  G L+SA KVFD + +R++V+W  MI+ + ++G++++AV+LF  M    
Sbjct: 81  GCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSG 140

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALV 272
           ++PD  TL  V+ +C ++G L LG+     V+K+ +DL+  +G +L+DMY KC   G++ 
Sbjct: 141 YVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVD 200

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQN-GLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
            AR+VFD M   +V++W A+IT Y Q+ G   EAI LF  M    V P+  T   VL AC
Sbjct: 201 DARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKAC 260

Query: 332 ASIGALDLGKWVD------KYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWN 380
           A++  + LG+ V       + AS   + + +      CG++++A K F+ +   N VS+N
Sbjct: 261 ANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYN 320

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LM 439
            +++A A +  + EA  LF  +  EG     N  TF  +LS     G + +G ++   ++
Sbjct: 321 TIVNAYAKSLNSEEAFELFNEI--EGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRIL 378

Query: 440 SSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPE 477
            S F    KS  + C  ++ +Y+R G++  A+     M +
Sbjct: 379 KSGF----KSNLHICNALISMYSRCGNIEAAFQVFNEMGD 414



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 35/368 (9%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +RDLVSW+++IS Y+    A EA+  F  M E  F P+E     V  +C +  ++ LGK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 242 VEGFVVKNK-MDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + GF++K    + +  +G ALIDM+ K  G L  A +VFD M +++VVTW  MIT + Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC- 358
           G S +A+ LF  M  +G  PD+ TL GV+SACA +G L LG+       + GL  D+   
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 359 -------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA-HEALLLFERMSK 404
                        GS+DDA KVF+ MPV N +SW A+I+    +G    EA+ LF  M +
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS----SSFGLIPKSEHYSCMVDLYA 460
             G  +PN  TF  VL AC +   +  G +++ L+     +S   +  S     ++ +Y+
Sbjct: 244 --GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNS-----LISMYS 296

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           R G++  A    + + EK + +    ++ A  K  N   S+   +L  EIE + +G   +
Sbjct: 297 RCGNMENARKAFDVLFEK-NLVSYNTIVNAYAKSLN---SEEAFELFNEIEGAGTG---V 349

Query: 521 SSKIFANL 528
           ++  FA+L
Sbjct: 350 NAFTFASL 357


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 305/553 (55%), Gaps = 52/553 (9%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFNYASLLFHQISR 80
           +LSLL+KC +   ++++H  M+   + +    L R++D        + NYA  +F+QI R
Sbjct: 8   ILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDR 67

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ Y +N MI+G + + +    +L +Y +M++ G  PD+FT+PFV  +C+ +   N G  
Sbjct: 68  PSLYIWNSMIKGYSIS-ESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQC 126

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ + K G + D + + +L+ MYA CG +++A KVFD+I + ++V+W S+I+G      
Sbjct: 127 VHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD-------L 253
             EAV ++  M      P+EIT+V+VL +C    DL  G+WV     +  +D        
Sbjct: 187 PSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNF 246

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMY KC                          AY Q G +NEA+ LF+ M+
Sbjct: 247 NVILATAIVDMYAKC--------------------------AYNQYGQANEALDLFSDMR 280

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI-----------D 362
            AG +PDK T + V+ ACA +GAL  G+ +  Y S+  L  D   G+            +
Sbjct: 281 IAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAE 340

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A +VF ++   +  +W ++I  LA +G   EAL  F++M +E  A  P+++T+IGVLSA
Sbjct: 341 RAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKM-QEDTALIPDEITYIGVLSA 399

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H G V++G+  F  M +  G+ P ++HY CMVDL +RAG L EA   VE+MP + +  
Sbjct: 400 CSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTA 459

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +  ALL  C+  +N DV+ RV + + E+E   SG YV+ S I+A    W++    R LM+
Sbjct: 460 IWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMK 519

Query: 543 EKGVSKTPGCSWI 555
           E+ + K+ G S +
Sbjct: 520 ERKIQKSLGHSSV 532


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 314/568 (55%), Gaps = 26/568 (4%)

Query: 14  FTELNDPSLLREKLL--SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID---- 64
           F E+    +  ++     +L+ C    +++    +H Q++I       F+   +++    
Sbjct: 159 FCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAK 218

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           L++   +  +F+ ++  N  ++N MI G T+    Y  +  L+ +M   G+ PD  T+  
Sbjct: 219 LQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN-DLYLDAFDLFLRMMGEGVTPDAQTFIG 277

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE--IRE 182
           V  +   L  +N    V     ++G+D +  V  +LI M ++CG L  AR +F+   I  
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           R    WN+MISGY + G+ ++A+ELF +M + +   D  T  SV  +   L  L LGK V
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV 397

Query: 243 EGFVVKNKMDLNFY-MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
               +K+ +++N+  + +A+ + Y KCG+L   R+VF+ M ++D+++W +++TAY+Q   
Sbjct: 398 HARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSE 457

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------ 355
            ++AI +F+ M+  G+ P++ T   VL +CA++  L+ G+ V     + GL  D      
Sbjct: 458 WDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA 517

Query: 356 -----IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG + DA KVF  +   + VSW A+I+  A +G   +AL LF RM + G    
Sbjct: 518 LVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLG--VE 575

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTF+ VL AC H GLV+EG + F LM  ++GL+P+ EHY+C+VDL +R GHL++A +
Sbjct: 576 PNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAME 635

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
           F+ RMP + +E+V   LLGAC+   N ++ +   Q +L  ++ NS  YV+ S  +     
Sbjct: 636 FISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGS 695

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           + D   +R LM+E+GV K PGCSWI ++
Sbjct: 696 YKDGLSLRHLMKEQGVKKEPGCSWISVN 723



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 152/521 (29%), Positives = 259/521 (49%), Gaps = 36/521 (6%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF-------LLIRII----DLK 66
            D  L  + L+ LL+ C   + ++Q  T  +  F+ K  F       LL  +        
Sbjct: 62  TDSHLQIQPLVDLLRDCVDARFLKQAKT--VHGFLLKSKFSNHHSLVLLNHVAHAYSKCS 119

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D + A  LF Q+S+ N +++ V+I GL      +    + + +M+  G+ PD F Y  + 
Sbjct: 120 DIDAACRLFDQMSQRNTFSWTVLIAGLAENGL-FLDGFEFFCEMQSQGIFPDQFAYSGIL 178

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             C  L ++  G  VH+ +   G      VS +L+ MYA+  +++ + KVF+ + E ++V
Sbjct: 179 QICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVV 238

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MI+G++      +A +LF RM  E   PD  T + V  + G L D+   K V G+ 
Sbjct: 239 SWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYA 298

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA--MVNKDVVTWNAMITAYAQNGLSNE 304
           ++  +D N  +G+ALIDM  KCG+L  AR +F++  +  +    WNAMI+ Y ++G + +
Sbjct: 299 LELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEK 358

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ LF +M    +  D  T   V +A A++  L LGK V   A + GL  +         
Sbjct: 359 ALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVA 418

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGS++D  KVF  M   + +SW ++++A +      +A+ +F  M  EG A  PN
Sbjct: 419 NAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIA--PN 476

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
             TF  VL +C +  L++ G+++  ++    GL       S +VD+YA+ G L +A    
Sbjct: 477 QFTFSSVLVSCANLCLLEYGQQVHGII-CKVGLDMDKCIESALVDMYAKCGCLGDAKKVF 535

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTD----VSQRVMQLLLE 509
            R+    D +   A++    +    D    + +R++QL +E
Sbjct: 536 NRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVE 575


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/515 (37%), Positives = 280/515 (54%), Gaps = 36/515 (6%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N  S+    + + + Y++N +I     +      +L  +  M++L L P+  T+P    S
Sbjct: 37  NLRSMFGKYVDKTSVYSWNSIIADFARSGDSL-QALYAFSSMRKLSLHPNRSTFPCTIKS 95

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C++L  L  G  +H   F  G   D  V+ +LI MY++CG L+ ARK+FDEI ER++VSW
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSW 155

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFL----------------PDEITLVSVLGSCGD 232
            SMISGY +   A+EAV LF     +EFL                 D + L  V+ +C  
Sbjct: 156 TSMISGYVQNERAREAVFLF-----KEFLLVDETDYDEIVGVGVGVDSVLLGCVISACAR 210

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           +    + + V G  VK   +    +G+ L+D Y KCG +  +R+VFD M   DV +WN++
Sbjct: 211 VCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSL 270

Query: 293 ITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           I  YAQNGLS EA  LF+ M K   V  + +TL  VL ACA  GAL +GK +     +  
Sbjct: 271 IAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKME 330

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  ++            CG ++ A K F+ +   N  SW  M++    +G   EA+ +F 
Sbjct: 331 LEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFY 390

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M + G   +PN +TF+ VL+AC HAGL+ EG   F+ M   F + P  EHYSCMVDL  
Sbjct: 391 EMIRCG--IKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLG 448

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG+L EA+  ++ M  K D IV G+LLGAC+  KN ++ +   + L +++ SN G YV+
Sbjct: 449 RAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVL 508

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            S I+A+   WDD  +MR LM+  G+ KTPG S +
Sbjct: 509 LSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIV 543


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/499 (37%), Positives = 278/499 (55%), Gaps = 19/499 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSH--SLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           LF ++   N  ++  +I G     Q   H  +L L+ +M R+G  PD F    V  SC +
Sbjct: 299 LFDRMVDKNVVSWTTVIAG---CMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGS 355

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L+AL  G  VH+   K+ +D DD V + LI MYA+C  L  ARKVF+ +   DLVS+N+M
Sbjct: 356 LVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAM 415

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I GYS+     EA++LF  MR     P  +  VS+LG    L  L L   + G ++K  +
Sbjct: 416 IEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGV 475

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
            L+ + GSALID+Y KC  +  AR VF+ + +KD+V W AM + Y Q   + E++ L+  
Sbjct: 476 SLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKC 535

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GS 360
           ++ + + P++ T   V++A ++I +L  G+       + G   D F            GS
Sbjct: 536 LQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGS 595

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I++A K F      +   WN+MI+  A +G A +AL +FE M  EG   +PN VTF+GVL
Sbjct: 596 IEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEG--LKPNYVTFVGVL 653

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC H GL+D G   FD M S FG+ P  EHY CMV L  RAG L EA +F+E+MP K  
Sbjct: 654 SACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQA 712

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
            +V  +LL AC+   N ++     ++ +    ++SG+YV+ S IFA+  MW +  ++R  
Sbjct: 713 AVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREK 772

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M   GV K PGCSWI +++
Sbjct: 773 MDISGVVKEPGCSWIEVNN 791



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 255/518 (49%), Gaps = 32/518 (6%)

Query: 14  FTELNDPSLLREKL----LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII-----D 64
           F E   P ++ ++     L+ L + P     ++IH+++++    K +  L+  +      
Sbjct: 27  FLEPRIPPIIEQRKIGRELANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSK 86

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQ-MKRLGLKPDNF 120
           L   N+A+ LF  +S  N   ++ M+    + +  +SH L+   L+ Q M+    KP+ +
Sbjct: 87  LNLVNHANKLFDTMSHKNLVTWSSMV----SMYTHHSHCLEALMLFVQFMRSCNEKPNEY 142

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
               V  +C     LN  + +H  V K G  +D +V  SLI  Y +   +D AR +FD +
Sbjct: 143 ILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGL 202

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           + +   +W ++I+GYSK G ++ +++LF +M+E    PD+  L SVL +C  L  L  GK
Sbjct: 203 QVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGK 262

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +  +V+++ + ++  M +  ID Y KC  +   R++FD MV+K+VV+W  +I    QN 
Sbjct: 263 QIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNS 322

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
              +A+ LF  M   G NPD      VL++C S+ AL+ G+ V  YA +  + +D F   
Sbjct: 323 FHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKN 382

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   C S+ DA KVF  M   + VS+NAMI   +   +  EAL LF  M      +
Sbjct: 383 GLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREM--RLSLS 440

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            P  + F+ +L        ++   ++  L+   +G+       S ++D+Y++   + +A 
Sbjct: 441 SPTLLIFVSLLGVSASLYHLELSNQIHGLI-IKYGVSLDEFAGSALIDVYSKCSRVGDAR 499

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
              E + +K D +V  A+     +Q   + S ++ + L
Sbjct: 500 LVFEEIQDK-DIVVWTAMFSGYTQQSENEESLKLYKCL 536



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 206/411 (50%), Gaps = 19/411 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A LLF  +     + +  +I G +   +    SLKL+ QMK   + PD +    V  +C 
Sbjct: 195 ARLLFDGLQVKTSFTWTTIIAGYSKQGRSQV-SLKLFDQMKEGHVCPDKYVLSSVLSACL 253

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  L  G  +H  V + G+  D  + +  I  Y +C K+   RK+FD + ++++VSW +
Sbjct: 254 MLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTT 313

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+G  +  + ++A++LF  M    + PD     SVL SCG L  L  G+ V  + +K  
Sbjct: 314 VIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVN 373

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D + ++ + LIDMY KC +L  AR+VF+ M   D+V++NAMI  Y++     EA+ LF 
Sbjct: 374 IDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFR 433

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS---------- 360
            M+ +  +P  +  + +L   AS+  L+L   +     + G+  D F GS          
Sbjct: 434 EMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCS 493

Query: 361 -IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE--RMSKEGGAARPNDVTFI 417
            + DA  VFE++   + V W AM S         E+L L++  +MS+     +PN+ TF 
Sbjct: 494 RVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSR----LKPNEFTFA 549

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            V++A  +   +  G++ F       G        + +VD+YA++G + EA
Sbjct: 550 AVITAASNIASLRHGQQ-FHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEA 599


>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/495 (35%), Positives = 280/495 (56%), Gaps = 16/495 (3%)

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           QI   + Y +N +IRG          ++ +Y  +++ GLK D +T  FV  +C     + 
Sbjct: 38  QIDGLDTYTWNTIIRGYLEG-NDPEEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVIL 96

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  +FK+G + +  +  +L++MY    +    +++FDE+ +RDLV WN++I+ Y+
Sbjct: 97  EGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYA 156

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
                 +  E+   M      P+ +T VS+L  C  L  L  GK V G+V KN ++ + +
Sbjct: 157 HGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVF 216

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +ALID+Y KCG++  A +VF  M  ++VV+W ++I  Y+ N   NEA+  F +M+   
Sbjct: 217 VHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAEN 276

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------------IFCGSIDDA 364
           + PD+IT++GV+  C+ + + +LG+W+ +Y  + GL  +              CG+I  A
Sbjct: 277 IRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRA 336

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F+ M     VSW  MI  LA  G    AL+ F +M +EG   +P+ + F+ +LSAC 
Sbjct: 337 CQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREG--FKPDSLVFLSLLSACS 394

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLVDEG R F  M + + + P  EHY CMVD+  RAG + EA+ FV+ MP K D IV 
Sbjct: 395 HAGLVDEGWRCFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVW 454

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
             LLGAC  Q N  ++ +VM  L E+    S +YV+ S +FA+   WD+  ++R  M ++
Sbjct: 455 RTLLGACXXQGNISLANQVMNXLCELGPKKSEDYVLLSNLFASNAEWDNVXEVRKEMGDR 514

Query: 545 GVSKT-PGCSWIGID 558
           GV+K  PGCS+I  D
Sbjct: 515 GVTKQDPGCSFIEAD 529



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 171/323 (52%), Gaps = 15/323 (4%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G    AR++ D+I   D  +WN++I GY +    +EA+ ++  +R++    D  TLV V+
Sbjct: 27  GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIYNHVRKKGLKVDTYTLVFVI 86

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CG    ++ G+ + G + K   +    + +AL+ MYG        +++FD M  +D+V
Sbjct: 87  KACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLV 146

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
            WNA+I AYA      +   +   M  + V P+ +T + +LS C+S+ AL  GK V  Y 
Sbjct: 147 MWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREGKAVHGYV 206

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           ++  +  D+F           CGSI DA++VF+ MP+ N VSW ++I+  + N   +EAL
Sbjct: 207 TKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEAL 266

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-CM 455
             F++M  E    RP+++T +GV+  C      + G  +   +  + GL+ +S   +  +
Sbjct: 267 GFFKQMEAEN--IRPDEITVLGVVCMCSKLRSFELGEWISQYVVKT-GLVKESPAIANVL 323

Query: 456 VDLYARAGHLSEAWDFVERMPEK 478
           +D++A+ G++  A    + M EK
Sbjct: 324 MDMHAKCGNIKRACQIFDGMEEK 346


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/527 (33%), Positives = 293/527 (55%), Gaps = 45/527 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++S  N  ++  +I G       Y  ++ L+++M  +G++P++ T   V  +CA L 
Sbjct: 196 VFDKMSERNVVSWTSLIGGYAKR-GCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQ 254

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  V + + ++ L+ +  + ++L+ MY +CG +D ARK+FDE  +++LV +N+++S
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y + G A+E + + G M +    PD IT++S + +C +L D+  GKW  G+V++N ++ 
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEG 374

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNK----------------------------- 284
              + +A+I+MY KCG    A RVFD M+NK                             
Sbjct: 375 WDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMP 434

Query: 285 --DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
             D+V+WN MI A  Q  +  EAI LF  M+  G+  DK+T++GV SAC  +GALDL KW
Sbjct: 435 DSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKW 494

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  Y  ++ +  D+            CG    A++VF  M   +  +W A I A+A  G 
Sbjct: 495 IHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGN 554

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
              A+ LF+ M ++G   +P+ V F+ +L+A  H GLV++G  +F  M   +G+ P++ H
Sbjct: 555 GTGAIELFDEMLQQG--IKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVH 612

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y CMVDL  RAG LSEA   +  M  + ++++ G+LL AC+  KN D++    + + E++
Sbjct: 613 YGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELD 672

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              +G +V+ S I+A+   WDD AK+R  ++EKG  K PG S I I+
Sbjct: 673 PERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEIN 719



 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 165/526 (31%), Positives = 261/526 (49%), Gaps = 71/526 (13%)

Query: 31  LKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-------LKDFNYASLLFHQISRPN- 82
            KKC +   ++Q+H+Q+  N +      L  +I         +   YA          N 
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 83  ----EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
                Y F+ +IRG +     Y  ++ ++ Q+  +G  PDNFT+PFV  +C    AL  G
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYK-AIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEG 158

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             VH ++ K+G + D  V +SLI  Y  CG++D  R+VFD++ ER++VSW S+I GY+K 
Sbjct: 159 FQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKR 218

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G  KEAV LF  M E    P+ +T+V V+ +C  L DL LG+ V   + + ++++N  M 
Sbjct: 219 GCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV 278

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+DMY KCGA+  AR++FD  V+K++V +N +++ Y + GL+ E + +   M   G  
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGL------------------RHDIFC-- 358
           PD+IT++  +SAC+ +  +  GKW   Y  + GL                  + ++ C  
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398

Query: 359 ----------------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
                                 G ++ A K+F  MP ++ VSWN MI AL       EA+
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAI 458

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HY--- 452
            LF  M  EG  A  + VT +GV SAC + G +D  + +        G I K + H+   
Sbjct: 459 ELFRVMQSEGITA--DKVTMVGVASACGYLGALDLAKWI-------HGYIKKKDIHFDMH 509

Query: 453 --SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
             + +VD++AR G    A     +M ++ D     A +GA   + N
Sbjct: 510 LGTALVDMFARCGDPQSAMQVFNKMVKR-DVSAWTAAIGAMAMEGN 554


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 199/610 (32%), Positives = 311/610 (50%), Gaps = 82/610 (13%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQI 78
           L      LLK C  TK   +IH  ++  F     FLL  ++          YA  +F Q+
Sbjct: 14  LSNHYCELLKHCRDTK---KIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQM 70

Query: 79  SRPNEYAFNVMIRGLT--------------------TAWQK----YSHSLKLYYQMKRLG 114
            + N Y++N ++   +                     +W      Y+    L   +K   
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYN 130

Query: 115 LKPDNFTYPFVFISCANLLAL-------NHGVSVHSSVFKIGLDEDDHVSHSLITMYA-- 165
           L   N  +    I+ + +L L       + G+ VH  V K G      V   L+ MY+  
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190

Query: 166 -----------------------------RCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
                                        RC +++ +R++F +++E+D +SW +MI+G++
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  +EA++LF  MR E    D+ T  SVL +CG +  L  GK V  ++++     N +
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIF 310

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +GSAL+DMY KC ++  A  VF  M  K+VV+W AM+  Y QNG S EA+ +F  M+  G
Sbjct: 311 VGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG 370

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           + PD  TL  V+S+CA++ +L+ G      A   GL   I            CGSI+D+ 
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           ++F +M   +EVSW A++S  A  G+A+E L LFE M   G   +P+ VTFIGVLSAC  
Sbjct: 431 RLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHG--FKPDKVTFIGVLSACSR 488

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AGLV +G ++F+ M     +IP  +HY+CM+DL++RAG L EA  F+ +MP   D I   
Sbjct: 489 AGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWA 548

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           +LL +C+  +N ++ +   + LL++E  N+ +Y++ S I+A    W++ A +R  MR+KG
Sbjct: 549 SLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKG 608

Query: 546 VSKTPGCSWI 555
           + K PGCSWI
Sbjct: 609 LRKEPGCSWI 618


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/483 (37%), Positives = 271/483 (56%), Gaps = 16/483 (3%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N  +R L    Q +  +L LY QM R G +P+ FT+PF   SCA L     G   H  +
Sbjct: 8   WNTQLRELAKRCQ-FLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE-IRERDL-VSWNSMISGYSKMGYAKE 203
            K+G   +  V   LI+MY +   +D+ARKVF+E    R L V +N+++SGY       +
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           AV LF +M EE    + +TL+ ++ +C    +L LG  +    +K   D +  + +  I 
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFIT 186

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG++  A+++FD M  K +++WNAM++ YAQNGL+   + L+  M   GV+PD +T
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 246

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
           L+GVLS+CA++GA  +G  V+      G   + F           CG++  A  VF+ MP
Sbjct: 247 LVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 306

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
               VSW A+I     +G    A+ LF+ M + G    P+   F+ VLSAC HAGL D+G
Sbjct: 307 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSG--IEPDGTAFVCVLSACSHAGLTDQG 364

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
              F +M  ++ L P  EHYSCMVDL  RAG L EA   +E MP K D  V GALLGAC+
Sbjct: 365 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACK 424

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
             KN ++++   + ++E+E  N G YV+ S I++N        ++R +M+EK + K PGC
Sbjct: 425 IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGC 484

Query: 553 SWI 555
           S++
Sbjct: 485 SYV 487



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 178/341 (52%), Gaps = 16/341 (4%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           FH  SR     +N ++ G  +   K S ++ L+ QM   G+  ++ T   +  +C + + 
Sbjct: 102 FH--SRKLTVCYNALVSGYVSN-SKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPIN 158

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G S+H S  K G D D  V +  ITMY +CG ++ A+K+FDE+  + L+SWN+M+SG
Sbjct: 159 LELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSG 218

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y++ G A   +EL+  M      PD +TLV VL SC +LG   +G  VE  +  +    N
Sbjct: 219 YAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSN 278

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++ +ALI+MY +CG L  A+ VFD M  + +V+W A+I  Y  +G    A+ LF  M  
Sbjct: 279 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 338

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDK-----YASQRGLRH-----DIF--CGSID 362
           +G+ PD    + VLSAC+  G  D G    K     Y  + G  H     D+    G + 
Sbjct: 339 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 398

Query: 363 DALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           +A  + E MP+  + + W A++ A   +     A L FER+
Sbjct: 399 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERV 439


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 305/557 (54%), Gaps = 34/557 (6%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQI 78
           L E+ +S L +C S   V+QIH Q+L   + + +F+  ++I      +    A  +F+QI
Sbjct: 16  LLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQI 75

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
             P+   +N +IR      +    +  ++++M+  G+  DNFTYPF+  +C+  + +   
Sbjct: 76  QDPDVLLYNTLIRAHVRNSEPLL-AFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVV 134

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCG--KLDSARKVFDEIRERDLVSWNSMISGYS 196
             +H+ V K+G   D  V +SLI  Y +CG   + +ARKVF+ + ERD VSWNSMI G  
Sbjct: 135 EMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLV 194

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NF 255
           K+G   EA  LF  M E     D ++  ++L      G +  G+    F +  KM   N 
Sbjct: 195 KVGELGEARRLFDEMPER----DTVSWNTILD-----GYVKAGEMNAAFELFEKMPARNV 245

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
              S ++  Y K G +  AR +FD M  K++V W  MI+ YA+ GL+ +AI L+N+M+ A
Sbjct: 246 VSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEA 305

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSID 362
           G+  D  T+I +LSACA  G L LGK V  +AS    R            D++  CGS++
Sbjct: 306 GLKFDDGTVISILSACAVSGLLGLGKRV--HASIERTRFKCSTPVSNALIDMYAKCGSLE 363

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +AL +F  M   + VSWNA+I  LA +G   +AL LF RM  EG    P+ VTF+GVL A
Sbjct: 364 NALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFV--PDKVTFVGVLCA 421

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAG VDEG   F  M   +G+ P+ EHY CMVDL  R G L EA+  V  MP + + I
Sbjct: 422 CTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAI 481

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + G LLGAC+    T +++ V   L++ E S+SGN  + S I+A    WD+ A +R  M+
Sbjct: 482 IWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMK 541

Query: 543 EKGVSKTPGCSWIGIDD 559
              + K  G S I +DD
Sbjct: 542 STSIQKPSGGSSIEVDD 558


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/549 (34%), Positives = 301/549 (54%), Gaps = 26/549 (4%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C   +     +++H Q ++      +F+L  ++D+    ++   +  +F +I   N
Sbjct: 144 VLKACSELRETDEGRKLHCQ-IVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRN 202

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              +  MI G           L L+ +M+   ++ + +T   +  +C  L AL+ G  VH
Sbjct: 203 VVCWTSMIVGYVQN-DCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVH 261

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V K G D +  +   L+ +Y +CG +  A  VFDE+   DLVSW +MI GY++ GY +
Sbjct: 262 GYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPR 321

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGSAL 261
           EA++LF   R ++ LP+ +T  SVL +C   G L +G+ V    +K    D  F   +AL
Sbjct: 322 EALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATF--ENAL 379

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KC  +  AR VF+ + +KDV+ WN++I+ Y QNG + EA+ LF++M+   V PD 
Sbjct: 380 VDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDA 439

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------------CGSIDDALKVFE 369
           ITL+ VLSACAS+GA  +G  +  YA + GL                 CG  + A  +F+
Sbjct: 440 ITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFD 499

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           +M   N ++W+AMI      G    +L LF  M KE     PN+V F  +LSAC H+G++
Sbjct: 500 EMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKE--KLEPNEVIFTTILSACSHSGML 557

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            EG R F+ M   +  +P  +HY+CMVDL ARAG L EA DF+E++P + D  +LGA L 
Sbjct: 558 GEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLH 617

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C+     D+ +  ++ +LE+    +  YV+ S ++A+   W  + ++  LM+++G++K 
Sbjct: 618 GCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKL 677

Query: 550 PGCSWIGID 558
           PG S + I+
Sbjct: 678 PGWSLVDIE 686



 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 255/483 (52%), Gaps = 30/483 (6%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQISRPNE 83
            SLL  C +  ++++IH  ++++ + +      +++ L   F +   A L+F +I  P+ 
Sbjct: 43  FSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDL 102

Query: 84  YAFNVMIRGLTTAW----QKYSHSLKLYYQMKRLGLKP-DNFTYPFVFISCANLLALNHG 138
           Y++ VMIR     W      YS  ++ Y    R  L   DN  +  V  +C+ L   + G
Sbjct: 103 YSWKVMIR-----WYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEG 157

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H  + K+G   D  V   L+ MYA+C +++ +R+VFDEI +R++V W SMI GY + 
Sbjct: 158 RKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQN 216

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              KE + LF RMRE     ++ TL S++ +C  LG L  GKWV G+V+K+  DLN ++ 
Sbjct: 217 DCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLV 276

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + L+D+Y KCG +  A  VFD +   D+V+W AMI  YAQ G   EA+ LF   ++  + 
Sbjct: 277 TPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLL 336

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVF 368
           P+ +T   VLSACA  G+L++G+ V     + G     F          C  I DA  VF
Sbjct: 337 PNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVF 396

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E +   + ++WN++IS    NG A+EAL LF++M  +  +  P+ +T + VLSAC   G 
Sbjct: 397 ETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSD--SVYPDAITLVSVLSACASVGA 454

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
              G  L      + GL+  S +  + +++ YA+ G    A    + M EK + I   A+
Sbjct: 455 YRVGSSLHGYAIKA-GLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEK-NTITWSAM 512

Query: 488 LGA 490
           +G 
Sbjct: 513 IGG 515


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 303/550 (55%), Gaps = 23/550 (4%)

Query: 29  SLLKKCPSTKTVQ---QIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           SLL  C S   +Q   Q+H+ +L      ++I + + LL   +   D   A  +F+   R
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS-LLDLYVKCGDIETAHDIFNLGDR 308

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            N   +N+M+          + S +++ QM+  G+ P+ FTYP +  +C     +  G  
Sbjct: 309 TNVVLWNLMLVAYGQI-SDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ 367

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +HS   K G + D +VS  LI MY++   LD ARK+ + + +RD+VSW SMI+GY +  +
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +EA+  F  M++    PD I L S   +C  +  +  G  +   V  +    +  + + 
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNT 487

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+++Y +CG    A  +F  + +KD +TWN +I+ + Q+ L  +A+M+F +M  AG   +
Sbjct: 488 LVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYN 547

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
             T I  +SA A++  +  GK V   A + G   +             CGSI+DA  +F 
Sbjct: 548 VFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFS 607

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           +M + NEVSWN +I++ + +GR  EAL LF++M +EG   +PNDVTFIGVL+AC H GLV
Sbjct: 608 EMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEG--LKPNDVTFIGVLAACSHVGLV 665

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           +EG   F  MS+ +GL P  +HY+C+VD+  RAG L  A  FV+ MP   + ++   LL 
Sbjct: 666 EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           AC+  KN ++ +   + LLE+E  +S +YV+ S  +A    W +  ++R +M+++G+ K 
Sbjct: 726 ACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785

Query: 550 PGCSWIGIDD 559
           PG SWI + +
Sbjct: 786 PGRSWIEVKN 795



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 231/486 (47%), Gaps = 23/486 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNF----LLIRIIDLKDFNYASLLFHQIS 79
           L S+L  C   K   Q   IH Q+         F    L+   +    F  A  +F  + 
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML 206

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +   FN +I G          +L+++ +M+  GL+PD  T   +  +CA++  L  G 
Sbjct: 207 FCDRVTFNTLISGHAQCGHGEC-ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +HS + K G+  D     SL+ +Y +CG +++A  +F+     ++V WN M+  Y ++ 
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              ++ E+FG+M+     P++ T   +L +C   G + LG+ +    +KN  + + Y+  
Sbjct: 326 DLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSG 385

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LIDMY K   L  AR++ + +  +DVV+W +MI  Y Q+    EA+  F  M+  GV P
Sbjct: 386 VLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D I L    SACA I A+  G  +       G   DI            CG  ++A  +F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            ++   +E++WN +IS    +    +AL++F +MS+ G  A+ N  TFI  +SA  +   
Sbjct: 506 REIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAG--AKYNVFTFISAISALANLAD 563

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + +G+++      + G   ++E  + ++ LY + G + +A      M  + +E+    ++
Sbjct: 564 IKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTII 621

Query: 489 GACQKQ 494
            +C + 
Sbjct: 622 TSCSQH 627



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 218/464 (46%), Gaps = 20/464 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
           V +IH   ++  +     +   +IDL   N     A  +F ++S  +  ++  M+ G   
Sbjct: 62  VLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQ 121

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
                  + +LY QM    + P  +    V  +C        G  +H+ V+K     +  
Sbjct: 122 RGLG-KEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETF 180

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++LI +Y   G    A +VF ++   D V++N++ISG+++ G+ + A+++F  M+   
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSG 240

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD +T+ S+L +C  +GDL  GK +  +++K  M  ++    +L+D+Y KCG +  A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +F+     +VV WN M+ AY Q     ++  +F +M+  G++P+K T   +L  C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 336 ALDLGKWVDKYASQRGLRHDIFCGSI-----------DDALKVFEDMPVTNEVSWNAMIS 384
            ++LG+ +   + + G   D++   +           D A K+ E +   + VSW +MI+
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               +    EAL  F+ M   G    P+++      SAC     + +G ++   +  S G
Sbjct: 421 GYVQHDFCEEALATFKEMQDCG--VWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-G 477

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
                  ++ +V+LYAR G   EA+     +  K DEI    L+
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLI 520


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 305/552 (55%), Gaps = 23/552 (4%)

Query: 27  LLSLLKKCPST---KTVQQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           + SLL  C +    +  +Q+H+ +L     +++I + + LL   +   D   A  +F   
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGS-LLDLYVKSGDIEEALQIFDSG 305

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
            R N   +N+M+          + S  ++Y+M   G++P+ FTYP +  +C +   +  G
Sbjct: 306 DRTNVVLWNLMLVAYGQI-DDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG 364

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +HS   K G   D +VS  LI MY++ G LD A+++ D I E+D+VSW SMI+GY + 
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQH 424

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
            + KEA+E F  M+     PD I L S + +C  +  +  G  +   V  +    +  + 
Sbjct: 425 EFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIW 484

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + L+ +Y +CG    A   F+A+ +K+ +TWN +I+ +AQ+GL  EA+ +F +M  AG  
Sbjct: 485 NGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAK 544

Query: 319 PDKITLIGVLSACASIGALDLGKWVDK------YASQRGLRHDIF-----CGSIDDALKV 367
            +  T +  +SA A++  +  GK +        Y S+  + + +      CGSI+DA   
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMD 604

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F +M   NEVSWN +I+  + +GR  EAL LF++M ++G   +P+DVTF+GVL+AC H G
Sbjct: 605 FFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQG--LKPSDVTFVGVLTACSHVG 662

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           LV+EG   F  MS+  G+ P+ +HY+C+VD+  RAG L  A  FVE MP   D +V   L
Sbjct: 663 LVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTL 722

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+  KN ++ +   + LLE+E  +S +YV+ S  +A    W    ++R +M+++GV 
Sbjct: 723 LSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVR 782

Query: 548 KTPGCSWIGIDD 559
           K PG SWI + +
Sbjct: 783 KEPGRSWIEVKN 794



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 221/454 (48%), Gaps = 19/454 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDL---KDF-NYASLLFHQISRPNEYAFNVMIRGLTT 95
           V +IH + +I  +     +   +IDL   K F   A  +F ++S  +  ++  ++ G   
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
                  +++LY +M R G+ P  +    +  +C        G  +H  V+K G   +  
Sbjct: 121 NGLG-EEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++LI++Y RC     A +VF ++   D V++N++ISG+++ G+   A+ +F  M+   
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD +T+ S+L +C  +GDL  GK +  +++K  M L++ M  +L+D+Y K G +  A 
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEAL 299

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           ++FD+    +VV WN M+ AY Q     ++  +F RM  AGV P+K T   +L  C   G
Sbjct: 300 QIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
            + LG+ +     + G + D++            G +D A ++ + +   + VSW +MI+
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIA 419

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               +    EAL  F+ M   G    P+++     +SAC     V +G ++   +  S G
Sbjct: 420 GYVQHEFCKEALETFKEMQACG--IWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-G 476

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                  ++ +V LYAR G   EA+   E +  K
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK 510


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 314/568 (55%), Gaps = 26/568 (4%)

Query: 14  FTELNDPSLLREKLL--SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID---- 64
           F E+    +  ++     +L+ C    +++    +H Q++I       F+   +++    
Sbjct: 159 FCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAK 218

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           L++   +  +F+ ++  N  ++N MI G T+    Y  +  L+ +M   G+ PD  T+  
Sbjct: 219 LQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN-DLYLDAFDLFLRMMGEGVTPDAQTFIG 277

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE--IRE 182
           V  +   L  +N    V     ++G+D +  V  +LI M ++CG L  AR +F+   I  
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           R    WN+MISGY + G+ ++A+ELF +M + +   D  T  SV  +   L  L LGK V
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKV 397

Query: 243 EGFVVKNKMDLNFY-MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
               +K+ +++N+  + +A+ + Y KCG+L   R+VF+ M ++D+++W +++TAY+Q   
Sbjct: 398 HARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSE 457

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------ 355
            ++AI +F+ M+  G+ P++ T   VL +CA++  L+ G+ V     + GL  D      
Sbjct: 458 WDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA 517

Query: 356 -----IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG + DA KVF  +   + VSW A+I+  A +G   +AL LF RM + G    
Sbjct: 518 LVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLG--VE 575

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTF+ VL AC H GLV+EG + F LM  ++GL+P+ EHY+C+VDL +R GHL++A +
Sbjct: 576 PNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAME 635

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
           F+ RMP + +E+V   LLGAC+   N ++ +   Q +L  ++ NS  YV+ S  +     
Sbjct: 636 FISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGS 695

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           + D   +R +M+E+GV K PGCSWI ++
Sbjct: 696 YKDGLSLRHVMKEQGVKKEPGCSWISVN 723



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 152/521 (29%), Positives = 259/521 (49%), Gaps = 36/521 (6%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF-------LLIRII----DLK 66
            D  L  + L+ LL+ C   + ++Q  T  +  F+ K  F       LL  +        
Sbjct: 62  TDSHLQIQPLVDLLRDCVDARFLKQAKT--VHGFLLKSKFSNHHSLVLLNHVAHAYSKCS 119

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D + A  LF Q+S+ N +++ V+I GL      +    + + +M+  G+ PD F Y  + 
Sbjct: 120 DIDAACRLFDQMSQRNTFSWTVLIAGLAENGL-FLDGFEFFCEMQSQGIFPDQFAYSGIL 178

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             C  L ++  G  VH+ +   G      VS +L+ MYA+  +++ + KVF+ + E ++V
Sbjct: 179 QICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVV 238

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MI+G++      +A +LF RM  E   PD  T + V  + G L D+   K V G+ 
Sbjct: 239 SWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYA 298

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA--MVNKDVVTWNAMITAYAQNGLSNE 304
           ++  +D N  +G+ALIDM  KCG+L  AR +F++  +  +    WNAMI+ Y ++G + +
Sbjct: 299 LELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEK 358

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ LF +M    +  D  T   V +A A++  L LGK V   A + GL  +         
Sbjct: 359 ALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVA 418

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGS++D  KVF  M   + +SW ++++A +      +A+ +F  M  EG A  PN
Sbjct: 419 NAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIA--PN 476

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
             TF  VL +C +  L++ G+++  ++    GL       S +VD+YA+ G L +A    
Sbjct: 477 QFTFSSVLVSCANLCLLEYGQQVHGII-CKVGLDMDKCIESALVDMYAKCGCLGDAKKVF 535

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTD----VSQRVMQLLLE 509
            R+    D +   A++    +    D    + +R++QL +E
Sbjct: 536 NRIS-NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVE 575


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 315/592 (53%), Gaps = 63/592 (10%)

Query: 16  ELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFN 69
           +LN PSL+      LL+KC S    +QI   M+ N +    F + R++        ++  
Sbjct: 29  KLNHPSLI------LLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLE 82

Query: 70  YASLLF-HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
            A LLF H    PN Y FN MI G   + +K   +  +Y  M + G  PD  T+ ++ + 
Sbjct: 83  LAILLFNHFTPYPNLYIFNTMILGFPFSNEK---AFTIYRSMLQNGTYPDRQTFLYL-LQ 138

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
               +A    +  H+ VF + L +++++ +SLI  Y   G  + AR++FDE+ +R++VS+
Sbjct: 139 TTKFVAEVKQIHCHALVFGL-LSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSY 197

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MI G++K+G     +ELF  MR     PD+ T++ +L  CG LG+  LGK V   + K
Sbjct: 198 NTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEK 257

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK------------------------ 284
           +    N  + +AL+DMY KC  L  AR+VFD  + K                        
Sbjct: 258 SIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDL 317

Query: 285 -------DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
                  D+V+WN++I+ YAQNG       LF RM    V PDK+T++ ++SA A +GAL
Sbjct: 318 FNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGAL 377

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           D G+W+   A +   + + F           CGSI+ A  +F  +P  +  +W  MI+  
Sbjct: 378 DQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGF 437

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           AF+G  ++AL LF  M  E    +PNDVTF+ VL+AC H+GLVDEG ++F  M   + + 
Sbjct: 438 AFHGFGNKALELFSVMQAE---TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIE 494

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P  EHY C+VDL  R+G L +A   +E+MP +    + GA+L AC+  +N ++++R +  
Sbjct: 495 PGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALME 554

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           LL++E    G Y++ S ++A    W  S  +R +M  +GV K  GCS + +D
Sbjct: 555 LLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 606


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/515 (34%), Positives = 284/515 (55%), Gaps = 18/515 (3%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           F++  ++D+     D   A  +F +I   N  ++  M+ G        +  L L+ +M++
Sbjct: 168 FVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFA-ADGLLLFNKMRQ 226

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
             + P  +T   V  +C+ L+ L+ G  +H SV K GL  +  +S +L+ MY +CG+L+ 
Sbjct: 227 DNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELED 286

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A+ VFDE+   DLV W +MI GY++ G   +A+ LF   +    +P+ +T+ +VL +   
Sbjct: 287 AQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQ 346

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L DL LG+ + G  VK  +     + +AL+DMY KC A+  A R+F ++ NKDVV WN+M
Sbjct: 347 LRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSM 406

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           ++ YA+N + N+A+MLF +M   G +PD I+++  LSA   +G L +GK    YA +   
Sbjct: 407 LSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAF 466

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +I+           CG +  A +VF++M   N V+W AMI      G +  ++ LF  
Sbjct: 467 LSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGE 526

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M K+G    PNDV F  +LS C H G+V   +R FD M+  F + P  +HY+CMVD+ AR
Sbjct: 527 MLKDG--VHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLAR 584

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG+L EA +F++ MP + D  V GA L  C+        +  ++ ++ +       YV+ 
Sbjct: 585 AGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLI 644

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
           S ++ +  MW+ S  +R  M+EKG+ K PG S IG
Sbjct: 645 SNLYTSNGMWEKSQAIRRWMQEKGLVKLPGYSSIG 679



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 259/492 (52%), Gaps = 27/492 (5%)

Query: 27  LLSLLKKC---PSTKTVQQ---IHTQ-MLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           LL LL  C   PS + +      HTQ +L+  ++    LL     L D   A ++F    
Sbjct: 32  LLRLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 91

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP---DNFTYPFVFISCANLLALN 136
           RP+ Y++ VM+  L  A ++++ ++ L+  M+R    P   D+F       +C       
Sbjct: 92  RPDAYSYGVMLWCLVQA-ERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYG 150

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
           +G  +H    K+G   D  V +SL+ MYA+ G L+ ARKVF+ I  R++VSW SM+SG  
Sbjct: 151 YGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCV 209

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G+A + + LF +MR++   P E T+ +V+ +C  L  L  G+W+ G V+K  +  N +
Sbjct: 210 QNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSF 269

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +AL+DMY KCG L  A+ VFD +   D+V W  MI  Y QNG   +A+ LF   K+A 
Sbjct: 270 ISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFAN 329

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDAL 365
           + P+ +T+  VLSA A +  L LG+ +   A + GL           D++  C ++ +A 
Sbjct: 330 IVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEAN 389

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           ++F  +   + V+WN+M+S  A N   ++AL+LF++MS +G +  P+ ++ +  LSA V 
Sbjct: 390 RIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPS--PDAISVVHALSASVC 447

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            G +  G+  F   +     +      + +++LY + G L  A    + M ++ + +   
Sbjct: 448 LGDLLIGKS-FHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDR-NSVTWC 505

Query: 486 ALLGACQKQKNT 497
           A++G    Q ++
Sbjct: 506 AMIGGYGMQGDS 517



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 198/383 (51%), Gaps = 21/383 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           +++  C +   + Q   +H  ++   +   +F+   ++D+     +   A  +F ++S  
Sbjct: 238 TVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYI 297

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +  MI G T        +L+L+   K   + P++ T   V  + A L  L+ G S+
Sbjct: 298 DLVLWTTMIVGYTQNGNPLD-ALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSI 356

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K+GL E   V ++L+ MYA+C  +  A ++F  I  +D+V+WNSM+SGY++    
Sbjct: 357 HGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMC 416

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            +A+ LF +M  +   PD I++V  L +   LGDL++GK   G+ VK+    N Y+ +AL
Sbjct: 417 NDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTAL 476

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +++Y KCG L  ARRVFD M +++ VTW AMI  Y   G S  +I LF  M   GV+P+ 
Sbjct: 477 LNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPND 536

Query: 322 ITLIGVLSACASIGALDLGK-WVDKYASQ----RGLRH-----DIF--CGSIDDALKVFE 369
           +    +LS C+  G +   K + D  A        ++H     D+    G++++AL+  +
Sbjct: 537 VAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFID 596

Query: 370 DMPVTNEVS-WNAMISALAFNGR 391
           +MP+  + S W A +     + R
Sbjct: 597 NMPMQADTSVWGAFLHGCELHSR 619


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/528 (33%), Positives = 286/528 (54%), Gaps = 50/528 (9%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F  +  P   A+  +IR  T     +S +L  + +M+  G  PD+  +P V  SC  ++ 
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQ-SLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR---------CGK---------------- 169
           L  G SVH  + ++G+D D +  ++L+ MYA+          G                 
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180

Query: 170 -----------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
                      +DS R+VF+ +  +D+VS+N++I+GY++ G  ++A+ +   M   +  P
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D  TL SVL    +  D++ GK + G+V++  +D + Y+GS+L+DMY K   +  + RVF
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             +  +D ++WN+++  Y QNG  NEA+ LF +M  A V P  +    V+ ACA +  L 
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           LGK +  Y  + G   +IF           CG+I  A K+F+ M V +EVSW A+I   A
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHA 420

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G  HEA+ LFE M ++G   +PN V F+ VL+AC H GLVDE    F+ M+  +GL  
Sbjct: 421 LHGHGHEAVSLFEEMKRQG--VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 478

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+ + DL  RAG L EA++F+ +M  +    V   LL +C   KN +++++V + +
Sbjct: 479 ELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKI 538

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             ++S N G YV+   ++A+   W + AK+R  MR+KG+ K P CSWI
Sbjct: 539 FTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 202/410 (49%), Gaps = 37/410 (9%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F  + R +  ++N +I G   +   Y  +L++  +M    LKPD+FT   V    +  +
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGM-YEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G  +H  V + G+D D ++  SL+ MYA+  +++ + +VF  +  RD +SWNS+++
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY + G   EA+ LF +M   +  P  +   SV+ +C  L  L LGK + G+V++     
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ SAL+DMY KCG +  AR++FD M   D V+W A+I  +A +G  +EA+ LF  MK
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
             GV P+++  + VL+AC+ +G +D   W                G  +   KV+    +
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEA-W----------------GYFNSMTKVY---GL 476

Query: 374 TNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL--- 428
             E+  + A+   L   G+  EA     +M  E     P    +  +LS+C VH  L   
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVE-----PTGSVWSTLLSSCSVHKNLELA 531

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                ++F + S + G       Y  M ++YA  G   E      RM +K
Sbjct: 532 EKVAEKIFTVDSENMGA------YVLMCNMYASNGRWKEMAKLRLRMRKK 575



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 181/385 (47%), Gaps = 58/385 (15%)

Query: 155 HVSHSL-ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
           H S S+ I++Y     L  A  +F  ++   +++W S+I  ++      +A+  F  MR 
Sbjct: 39  HTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRA 98

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC----- 268
               PD     SVL SC  + DL  G+ V GF+V+  MD + Y G+AL++MY K      
Sbjct: 99  SGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGS 158

Query: 269 --------------------------GALVP-----ARRVFDAMVNKDVVTWNAMITAYA 297
                                       ++P      RRVF+ M  KDVV++N +I  YA
Sbjct: 159 KISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYA 218

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           Q+G+  +A+ +   M    + PD  TL  VL   +    +  GK +  Y  ++G+  D++
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVY 278

Query: 358 CGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
            GS           I+D+ +VF  +   + +SWN++++    NGR +EAL LF +M    
Sbjct: 279 IGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVT-- 336

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDLYARAG 463
              +P  V F  V+ AC H   +  G++L   ++   FG    S  +  S +VD+Y++ G
Sbjct: 337 AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG----SNIFIASALVDMYSKCG 392

Query: 464 HLSEAWDFVERMPEKVDEIVLGALL 488
           ++  A    +RM   +DE+   A++
Sbjct: 393 NIKAARKIFDRM-NVLDEVSWTAII 416



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 54/272 (19%)

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           L+    S +I +Y     L  A  +F  + +  V+ W ++I  +    L ++A+  F  M
Sbjct: 37  LSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM 96

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------------ 360
           + +G  PD      VL +C  +  L  G+ V  +  + G+  D++ G+            
Sbjct: 97  RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM 156

Query: 361 -----------------------------------IDDALKVFEDMPVTNEVSWNAMISA 385
                                              ID   +VFE MP  + VS+N +I+ 
Sbjct: 157 GSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAG 216

Query: 386 LAFNGRAHEALLLFERMSKEGGAA--RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
            A +G   +AL    RM +E G    +P+  T   VL        V +G+ +   +    
Sbjct: 217 YAQSGMYEDAL----RMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK- 271

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           G+       S +VD+YA++  + ++     R+
Sbjct: 272 GIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 310/548 (56%), Gaps = 24/548 (4%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C  ++     +++H Q ++ F    +F+   ++D+     +   +  +F +    N
Sbjct: 109 VLKACSESRNFDEGRKVHCQ-IVKFGNPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRN 167

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            ++++ MI G           L L+ +M+   ++ +  T   +  +C  L AL+ G  +H
Sbjct: 168 VFSWSSMIAGYVQN-NLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLH 226

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K G++   ++  +L+ +YA+CG +  AR VFDE+   D+VSW +MI GY++ G  +
Sbjct: 227 GYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPE 286

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA++LF +  +   LP+++T+ SV  SC  L +L LG+ + G  +K     +  + ++L+
Sbjct: 287 EALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-SRDPIVTNSLV 345

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KC     AR VF+ + ++DVV WN++I+A++QNG + EA+ LF++M+   V PD +
Sbjct: 346 DFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAV 405

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGL-RHDIF-----------CGSIDDALKVFED 370
           TL+ VLSACAS+ AL +G     YA +RGL   +++           CG  + A  +F+ 
Sbjct: 406 TLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDG 465

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + V+W+AMIS     G    +L +F  M K     +PN+  F  +LSAC H G++ 
Sbjct: 466 MDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLK--AELKPNEEIFTSILSACSHTGMIG 523

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG RLF ++   + L+P ++HY+CMVDL ARAG L EA DF+++MP + D  + GA L  
Sbjct: 524 EGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHG 583

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C      D+ +  ++ +LE+   ++  YV+   ++A+   W    ++R LM+++G+ KTP
Sbjct: 584 CGLHSRFDLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTP 643

Query: 551 GCSWIGID 558
           GCS + +D
Sbjct: 644 GCSLMEMD 651



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 263/511 (51%), Gaps = 32/511 (6%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLF 75
           P +L     SL   C +  T+ ++H  +++  + +      +++ L       + A L+F
Sbjct: 4   PPILHNFFYSL---CDNINTLMEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVF 60

Query: 76  HQISRPNEYAFNVMIRGLTTAW----QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
             I  P+  ++ V+IR     W     ++   +  Y +M+    + DN  +  V  +C+ 
Sbjct: 61  DTIPHPDFLSWKVIIR-----WYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSE 115

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
               + G  VH  + K G + D  V   L+ MYA+CG+++ +R VFDE  +R++ SW+SM
Sbjct: 116 SRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSM 174

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+GY +   A++ + LF RMREE    ++ITL  ++ +C  LG L  GKW+ G+++K  +
Sbjct: 175 IAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGI 234

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           +L  Y+ +AL+D+Y KCG +  AR VFD +   D+V+W AMI  Y QNG   EA+ LF +
Sbjct: 235 ELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQ 294

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI---------- 361
            +   V P+ +T+  V S+C+ +  L+LG+ +   + + G R  I   S+          
Sbjct: 295 KEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMN 354

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            DA  VFE +   + V+WN++ISA + NG A+EAL LF +M    G+  P+ VT + VLS
Sbjct: 355 RDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRM--GSVLPDAVTLVSVLS 412

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVD 480
           AC     +  G   F   +   GL+  + +  + ++  YA+ G    A    + M +K  
Sbjct: 413 ACASLNALQVGSS-FHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQK-S 470

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
            +   A++     Q N   S  +   +L+ E
Sbjct: 471 TVTWSAMISGYGIQGNGRGSLSIFGDMLKAE 501


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 266/469 (56%), Gaps = 14/469 (2%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+ +M+   +KP+  T   +  +CA+L  L  G S+H    K  +D D     +L++
Sbjct: 414 ALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVS 473

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+CG   +A   F+ +  RD+V+WNS+I+GY+++G    A+++F ++R     PD  T
Sbjct: 474 MYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGT 533

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM- 281
           +V V+ +C  L DL  G  + G +VK   + + ++ +ALIDMY KCG+L  A  +F+   
Sbjct: 534 MVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTD 593

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             KD VTWN +I AY QNG + EAI  F++M+    +P+ +T + VL A A + A   G 
Sbjct: 594 FTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
                  Q G   +             CG +D + K+F +M   + VSWNAM+S  A +G
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
               A+ LF  M +     + + V+F+ VLSAC HAGLV+EGR++F  MS  + + P  E
Sbjct: 714 HGDRAIALFSLMQES--QVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLE 771

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+CMVDL  RAG   E   F++ MP + D  V GALLG+C+   N  + +  +  L+++
Sbjct: 772 HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 831

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           E  N  ++V+ S I+A    W D+ K R+ M + G+ KTPGCSW+ + +
Sbjct: 832 EPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 240/464 (51%), Gaps = 22/464 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF----NYASLLFHQISRPNEYA 85
           LL  C     + QIH Q++++   K +  +  +I+L       + A  +F     P+   
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRIL 96

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MIR  T + ++Y+ +L++YY M   GL+PD +T+ FV  +C   L L  GV  H  +
Sbjct: 97  WNSMIRAYTRS-KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEI 155

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            + GL+ D  +   L+ MY++ G L  AR+VFD++ +RD+V+WN+MI+G S+     EAV
Sbjct: 156 DRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAV 215

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           + F  M+     P  ++L+++      L ++ L + + G+V +   D +  + + LID+Y
Sbjct: 216 DFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLY 273

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG +  ARRVFD MV++D V+W  M+  YA NG   E + LF++MK   V  +K++ +
Sbjct: 274 SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAV 333

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
               A A    L+ GK +   A Q+ +  DI            CG  + A ++F  +   
Sbjct: 334 SAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR 393

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           + V+W+A+I+AL   G   EAL LF+ M  +    +PN VT + +L AC    L+  G+ 
Sbjct: 394 DLVAWSAIIAALVQTGYPEEALSLFQEMQNQ--KMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +    +    +       + +V +YA+ G  + A     RM  +
Sbjct: 452 I-HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR 494



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 236/461 (51%), Gaps = 29/461 (6%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS------LKLYYQMKRLGLKPDNF 120
           D + A  +F Q+   ++ ++  M+ G       Y+H+      L+L+ +MK   ++ +  
Sbjct: 278 DVDVARRVFDQMVDQDDVSWGTMMAG-------YAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           +    F++ A  + L  G  +H    +  +D D  V+  L+ MYA+CG+ + A+++F  +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGL 390

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           + RDLV+W+++I+   + GY +EA+ LF  M+ ++  P+ +TL+S+L +C DL  L LGK
Sbjct: 391 QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +  F VK  MD +   G+AL+ MY KCG    A   F+ M ++D+VTWN++I  YAQ G
Sbjct: 451 SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
               AI +F +++ + +NPD  T++GV+ ACA +  LD G  +     + G   D     
Sbjct: 511 DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570

Query: 358 --------CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                   CGS+  A  +F     T +EV+WN +I+A   NG A EA+  F +M  E   
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-- 628

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             PN VTF+ VL A  +     EG   F       G +  +   + ++D+YA+ G L  +
Sbjct: 629 FHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYS 687

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
                 M  K D +   A+L       + D +  +  L+ E
Sbjct: 688 EKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQE 727



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 251/509 (49%), Gaps = 25/509 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C     +Q+    H ++    +++  F+   ++D+     D   A  +F ++ + +
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             A+N MI GL+ + +    ++  +  M+ +G++P + +   +F     L  +    S+H
Sbjct: 195 VVAWNAMIAGLSQS-EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH 253

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             VF+   D    VS+ LI +Y++CG +D AR+VFD++ ++D VSW +M++GY+  G   
Sbjct: 254 GYVFR--RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFV 311

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E +ELF +M+      ++++ VS   +  +  DL  GK + G  ++ ++D +  + + L+
Sbjct: 312 EVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLM 371

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG    A+++F  +  +D+V W+A+I A  Q G   EA+ LF  M+   + P+++
Sbjct: 372 VMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL+ +L ACA +  L LGK +  +  +  +  D+            CG    AL  F  M
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + V+WN++I+  A  G  + A+ +F ++     A  P+  T +GV+ AC     +D+
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL--SAINPDAGTMVGVVPACALLNDLDQ 549

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA- 490
           G  +  L+    G        + ++D+YA+ G L  A     +     DE+    ++ A 
Sbjct: 550 GTCIHGLI-VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            Q     +      Q+ LE    NS  +V
Sbjct: 609 MQNGHAKEAISSFHQMRLENFHPNSVTFV 637



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 15/323 (4%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           YP +  SC +L   N  + +H+ +   G      ++H LI +Y+   K D AR VFD   
Sbjct: 35  YPRLLSSCKHL---NPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTP 90

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
               + WNSMI  Y++     EA+E++  M E+   PD+ T   VL +C    +L  G W
Sbjct: 91  NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVW 150

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
             G + +  ++ + ++G+ L+DMY K G L  AR VFD M  +DVV WNAMI   +Q+  
Sbjct: 151 FHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED 210

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
             EA+  F  M+  GV P  ++L+ +      +  ++L + +  Y  +R           
Sbjct: 211 PCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLI 270

Query: 355 DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           D++  CG +D A +VF+ M   ++VSW  M++  A NG   E L LF++M  + G  R N
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM--KLGNVRIN 328

Query: 413 DVTFIGVLSACVHAGLVDEGRRL 435
            V+ +    A      +++G+ +
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEI 351


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 290/562 (51%), Gaps = 84/562 (14%)

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            +  P  ++F+ +I     +   + H L  +  +  L L PD F  P    SCA+L AL+
Sbjct: 63  HLPHPTLFSFSSLIHAFARS-HHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALD 121

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H+     G   D  V+ SL  MY +C ++  ARK+FD + +RD+V W++MI+GYS
Sbjct: 122 PGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYS 181

Query: 197 KMGYAKEAVELFGRMRE-----------------------------------EEFLPDEI 221
           ++G  +EA ELFG MR                                    + F PD  
Sbjct: 182 RLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGS 241

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD-- 279
           T+  VL + G L D+V+G  V G+V+K  +  + ++ SA++DMYGKCG +    RVFD  
Sbjct: 242 TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEV 301

Query: 280 ------------------AMVNK---------------DVVTWNAMITAYAQNGLSNEAI 306
                              MV+                +VVTW ++I + +QNG   EA+
Sbjct: 302 EEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEAL 361

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF  M+  GV P+ +T+  ++ AC +I AL  GK +  ++ +RG+  D++         
Sbjct: 362 ELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMY 421

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG I  A + F+ M   N VSWNA++   A +G+A E + +F  M + G   +P+ VT
Sbjct: 422 AKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSG--QKPDLVT 479

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F  VLSAC   GL +EG R ++ MS   G+ PK EHY+C+V L +R G L EA+  ++ M
Sbjct: 480 FTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM 539

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + D  V GALL +C+   N  + +   + L  +E +N GNY++ S I+A+  +WD+  
Sbjct: 540 PFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEEN 599

Query: 536 KMRALMREKGVSKTPGCSWIGI 557
           ++R +M+ KG+ K PG SWI +
Sbjct: 600 RIREVMKSKGLRKNPGYSWIEV 621


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/499 (35%), Positives = 291/499 (58%), Gaps = 15/499 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F +++  +  ++N +I G  +        L ++ QM   G++ D  T   VF  CA
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLA-EKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +   ++ G +VHS   K     +D   ++L+ MY++CG LDSA+ VF E+ +R +VS+ S
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+GY++ G A EAV+LF  M EE   PD  T+ +VL  C     L  GK V  ++ +N 
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + ++ +AL+DMY KCG++  A  VF  M  KD+++WN +I  Y++N  +NEA+ LFN
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487

Query: 311 RM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RH------DIF--C 358
            + +    +PD+ T+  VL ACAS+ A D G+ +  Y  + G    RH      D++  C
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G++  A  +F+D+   + VSW  MI+    +G   EA+ LF +M + G  A  ++++F+ 
Sbjct: 548 GALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA--DEISFVS 605

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC H+GLVDEG R F++M     + P  EHY+C+VD+ AR G L +A+ F+E MP  
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D  + GALL  C+   +  ++++V + + E+E  N+G YV+ + I+A  + W+   ++R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725

Query: 539 ALMREKGVSKTPGCSWIGI 557
             + ++G+ K PGCSWI I
Sbjct: 726 KRIGQRGLRKNPGCSWIEI 744



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 243/459 (52%), Gaps = 25/459 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLL---------IRIIDLKDFNYASLLFHQ 77
           L S+L+ C  +K+++    + + NFI+   F++         +   +  D   AS +F +
Sbjct: 97  LCSVLQLCADSKSLKD--GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE 154

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +       +N+++  L  +   +S S+ L+ +M   G++ D++T+  V  S ++L +++ 
Sbjct: 155 VKIEKALFWNILMNELAKSGD-FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHG 213

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H  + K G  E + V +SL+  Y +  ++DSARKVFDE+ ERD++SWNS+I+GY  
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G A++ + +F +M       D  T+VSV   C D   + LG+ V    VK         
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + L+DMY KCG L  A+ VF  M ++ VV++ +MI  YA+ GL+ EA+ LF  M+  G+
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
           +PD  T+  VL+ CA    LD GK V ++  +  L  DIF           CGS+ +A  
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF +M V + +SWN +I   + N  A+EAL LF  + +E   + P++ T   VL AC   
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS-PDERTVACVLPACASL 512

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
              D+GR +   +  + G        + +VD+YA+ G L
Sbjct: 513 SAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGAL 550



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 48/372 (12%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R +   N+ +  + + G  + AV+L     + +  P   TL SVL  C D   L  GK 
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V+ F+  N   ++  +GS L  MY  CG L  A RVFD +  +  + WN ++   A++G 
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
            + +I LF +M  +GV  D  T   V  + +S+ ++  G+ +  +  + G       G+ 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNS 235

Query: 361 ----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                     +D A KVF++M   + +SWN++I+    NG A + L +F +M   G    
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG--IE 293

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDL------------------MSSSFGLIPKSE-- 450
            +  T + V + C  + L+  GR +  +                  M S  G +  ++  
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353

Query: 451 ----------HYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNT 497
                      Y+ M+  YAR G   EA    E M E+    D   + A+L  C + +  
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413

Query: 498 DVSQRVMQLLLE 509
           D  +RV + + E
Sbjct: 414 DEGKRVHEWIKE 425


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 311/591 (52%), Gaps = 57/591 (9%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR- 80
           ++   LL+LL+ C S     Q+H  + ++ +    F   R++     +    + H  +  
Sbjct: 35  VVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDHAAAIL 94

Query: 81  -----PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN---L 132
                PN Y    M+R    A +  S +  L+ ++ R  L  D  T  F   + A+    
Sbjct: 95  ARASAPNAYMLATMMRAFLRA-RLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEH 153

Query: 133 LALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
            + + G  VH    K G + +   V ++L+  YA    L  AR +FDE+ +RD+VSW ++
Sbjct: 154 HSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTL 213

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           + GY++ G A EA  +F RM     L P+E+TLV+V+ + G +G L  G+ V  +V    
Sbjct: 214 VDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGG 273

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV------------------------ 286
           +  +  + +ALIDM+GK G    AR VFD+M  KDV                        
Sbjct: 274 VGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFD 333

Query: 287 -------VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
                  V+W+ MI AY+Q     EA+ LF  M   GV P    L+ VLSACA +G LDL
Sbjct: 334 DMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDL 393

Query: 340 GKWV-DKYA-SQRGLRH--------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           G+W+ D Y  S + +          D++  CG  D A K+F +M   N VSWN+MI A A
Sbjct: 394 GRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHA 453

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G++ E L LFE++  +G    P+++TF+G+LSAC H+GLV EGRR F  M   +G+ P
Sbjct: 454 VHGQSEEVLRLFEQL--KGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEP 511

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           KSEHY+CM+DL  + G L EA++  + MP + DE   GALL AC+   N ++ +     L
Sbjct: 512 KSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKL 571

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +++   +SG YV+ S+I+A+   WD    +R LMRE+GV K PGCS I +D
Sbjct: 572 VQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVD 622


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 284/500 (56%), Gaps = 20/500 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F  +   N  ++  M+ G  T  +    + +L+  M ++  L+ + F    V  + 
Sbjct: 177 AKRVFDGMLHRNAVSWAAMVSGYATG-KCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAV 235

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L L  G  +H  V K GL     V +SL+TMYA+   +D+A +VF   +ER+ ++W+
Sbjct: 236 SVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWS 295

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GY++ G A  A  +F +M    F P E T V VL +C D+G LV+GK     +VK 
Sbjct: 296 AMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKL 355

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIML 308
             +   Y+ SAL+DMY KCG +  A+  F  + +  DVV W AMIT + QNG   EA+ML
Sbjct: 356 GFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALML 415

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           ++RM   G+ P  +T+  VL ACA + ALDLGK +  +A     R  +            
Sbjct: 416 YSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQL--HAQILKCRFSLGGSVGTALSTMY 473

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG+++D++ VF  MP  + +SWN++IS  + +GR  +AL +FE M  EG A  P+ +T
Sbjct: 474 SKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTA--PDHIT 531

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           FI +LSAC H GLVD G   F  M+  + LIP  +HY+CMVD+ +RAG L EA DF++ +
Sbjct: 532 FINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQLKEAKDFIDSI 591

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
                  +   +LGAC+  ++ DV     + L+E+ + +S  Y++ S I+A  + W+D  
Sbjct: 592 TIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVE 651

Query: 536 KMRALMREKGVSKTPGCSWI 555
           ++R LMR +GVSK  GCSW+
Sbjct: 652 RVRHLMRLRGVSKDLGCSWV 671



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 175/368 (47%), Gaps = 26/368 (7%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEIRE--RDLVSWNSMIS 193
           G ++H    K G      VS+SLIT Y    +  L +A  VF +I    RD+ SWNS+++
Sbjct: 33  GEALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALRDVASWNSLLN 92

Query: 194 GYSKMGYAKEAVELFGRM--REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
             S+  +   A+  F  M    E  LP   +  +   +   +     G        K   
Sbjct: 93  PLSRH-HPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHALACKLPS 151

Query: 252 DL---NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
                N ++ +AL++MY K GA+  A+RVFD M++++ V+W AM++ YA    S EA  L
Sbjct: 152 SCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFEL 211

Query: 309 FNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------- 360
           F  M +   +  ++     VLSA +    L +G  +     + GL   +   +       
Sbjct: 212 FRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYA 271

Query: 361 ----IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
               +D A++VF      N ++W+AMI+  A NG A+ A  +F +M   G    P + TF
Sbjct: 272 KAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSG--FTPTEFTF 329

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +GVL+AC   G +  G++   LM    G   +    S +VD+YA+ G + +A D   ++ 
Sbjct: 330 VGVLNACSDMGALVVGKQTHCLM-VKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLY 388

Query: 477 EKVDEIVL 484
           + VD++VL
Sbjct: 389 D-VDDVVL 395


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/485 (37%), Positives = 268/485 (55%), Gaps = 45/485 (9%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +P   TY  +   C  L AL+ G+ VH+     G      +S+ ++ MY +C  L +A++
Sbjct: 86  RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKR 145

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM------------------------ 211
           +FDE+ ERDL SWN MISGY+K G  +EA +LF +M                        
Sbjct: 146 LFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEA 205

Query: 212 --------REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
                   R E F  ++ T+ S L +   +  L LGK + G +++  +DL+  + SAL D
Sbjct: 206 LELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSD 265

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MYGKCG++  AR +FD  V++DVV+W AMI  Y + G   E   LF+ +  +G+ P++ T
Sbjct: 266 MYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFT 325

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
             GVL+ACA   A +LGK V  Y ++ G     F           CG+I +A +VF  MP
Sbjct: 326 FSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMP 385

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + VSW ++IS  A NG+  EAL  FE + K G   +P+ +TF+GVLSAC HAGLVD+G
Sbjct: 386 RPDLVSWTSLISGYAQNGQPDEALQFFELLLKSG--TQPDHITFVGVLSACTHAGLVDKG 443

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
              FD +    GL   ++HY+C++DL +R+G L EA D +++MP + D+ +  +LLG C+
Sbjct: 444 LEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCR 503

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N  +++R  + L EIE  N   Y   + I+A   +W   A++R +M  +GV K PG 
Sbjct: 504 IHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGL 563

Query: 553 SWIGI 557
           SWI I
Sbjct: 564 SWIEI 568



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 215/445 (48%), Gaps = 32/445 (7%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           ++  ++L +  KC S    +++  +M    +   N ++           A  LF Q++  
Sbjct: 125 VISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTER 184

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVS 140
           + +++  M  G     Q +  +L+L+  M+R    K + FT      + A + +L+ G  
Sbjct: 185 DNFSWTAMTSGYVRHDQ-HEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKE 243

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  + +IGLD D  V  +L  MY +CG +  AR +FD+  +RD+VSW +MI  Y K G 
Sbjct: 244 IHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGR 303

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +E   LF  + +    P+E T   VL +C D     LGK V G++ +   D + +  S 
Sbjct: 304 REEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAAST 363

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ MY KCG +  ARRVF+ M   D+V+W ++I+ YAQNG  +EA+  F  +  +G  PD
Sbjct: 364 LVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPD 423

Query: 321 KITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW 379
            IT +GVLSAC   G +D G ++ D    + GL H                        +
Sbjct: 424 HITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTH--------------------TADHY 463

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
             +I  L+ +GR  EA  + ++M  E     P+   +  +L  C   G +   +R  + +
Sbjct: 464 ACLIDLLSRSGRLQEAEDIIDKMPIE-----PDKFLWASLLGGCRIHGNLKLAKRAAEAL 518

Query: 440 SSSFGLIPKSE-HYSCMVDLYARAG 463
              F + P++   Y+ + ++YA AG
Sbjct: 519 ---FEIEPENPATYTTLANIYATAG 540



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 152/351 (43%), Gaps = 51/351 (14%)

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+++   +      P   T  ++L  C  L  L  G  V      +       + + +
Sbjct: 75  REAIQILDHVDR----PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRI 130

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--------- 312
           +DMY KC +LV A+R+FD M  +D+ +WN MI+ YA+ G   EA  LF++M         
Sbjct: 131 LDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWT 190

Query: 313 -----------------------KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
                                  ++     +K T+   L+A A+I +L LGK +  +  +
Sbjct: 191 AMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILR 250

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            GL  D             CGSI +A  +F+     + VSW AMI      GR  E   L
Sbjct: 251 IGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFAL 310

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  + K G    PN+ TF GVL+AC      + G+++   M +  G  P S   S +V +
Sbjct: 311 FSDLLKSG--IWPNEFTFSGVLNACADHAAEELGKQVHGYM-TRIGFDPSSFAASTLVHM 367

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           Y + G++  A      MP + D +   +L+    +    D + +  +LLL+
Sbjct: 368 YTKCGNIKNARRVFNGMP-RPDLVSWTSLISGYAQNGQPDEALQFFELLLK 417


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 174/445 (39%), Positives = 270/445 (60%), Gaps = 18/445 (4%)

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           P V  +C +LL    G  +H  V K+G + D  V+ SL+ MY+R G +  ARK+FD++  
Sbjct: 1   PPVVKACGDLL---DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           RD  SWN+MISGY + G A EA+++   MR E    D IT+ SVL  C  +GD++ GK +
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             +V+K+ ++   ++ +ALI+MY K G+L  A++VF  ++ KDVV+WN +IT YAQNGL+
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLA 176

Query: 303 NEAIMLFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           +EAI ++  M+ +  + P++ T + +L A + +GAL  G  +     +  L  D+F    
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG +DDA+ +F  +P  N V WNAMIS    +G   +AL LF  M  E    +
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAE--RVK 294

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ +TF+ +LSAC H+GLV + +  F++M   +G+ P  +HY CMVDL+ RAG L  A++
Sbjct: 295 PDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFN 354

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
           F+++MP + D    GALL AC+   N ++ +   + L E++S N G YV+ S I+AN+  
Sbjct: 355 FIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGK 414

Query: 531 WDDSAKMRALMREKGVSKTPGCSWI 555
           W+    +R+L R++G+ K PG S I
Sbjct: 415 WEGVDDVRSLARDRGLRKNPGWSSI 439



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 193/355 (54%), Gaps = 20/355 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  +   +  ++N MI G        + +L +  +M+  G+K D  T   V   CA
Sbjct: 48  ARKLFDDMPARDRGSWNAMISGYCQNGNA-AEALDIADEMRLEGVKMDAITVASVLPVCA 106

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +  +  G  +H  V K GL+ +  VS++LI MYA+ G L  A+KVF  +  +D+VSWN+
Sbjct: 107 QVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNT 165

Query: 191 MISGYSKMGYAKEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +I+GY++ G A EA+E++  M E EE +P++ T VS+L +   +G L  G  + G V+KN
Sbjct: 166 LITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN 225

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  + ++G+ LIDMYGKCG L  A  +F  +  K+ V WNAMI+ Y  +G   +A+ LF
Sbjct: 226 CLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELF 285

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF-- 357
             MK   V PD IT + +LSAC+  G +   +W      ++Y  +  L+H     D+F  
Sbjct: 286 REMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGR 345

Query: 358 CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGR----AHEALLLFERMSKEGG 407
            G ++ A    + MP+  + S W A+++A   +G      H +  LFE  S+  G
Sbjct: 346 AGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVG 400



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 18/265 (6%)

Query: 101 SHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           S ++++Y  M+    + P+  T+  +  + +++ AL  G+ +H  V K  L  D  V   
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI MY +CGKLD A  +F ++  ++ V WN+MIS Y   G  ++A+ELF  M+ E   PD
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKN---KMDLNFYMGSALIDMYGKCGALVPARR 276
            IT VS+L +C   G +   +W    + +    K  L  Y    ++D++G+ G L  A  
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHY--GCMVDLFGRAGELEMAFN 354

Query: 277 VFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
               M +  D   W A++ A   +G  N  +      +   V+ + +    +LS   +  
Sbjct: 355 FIKKMPIQPDASAWGALLNACRIHG--NIELGKHASERLFEVDSENVGYYVLLSNIYA-- 410

Query: 336 ALDLGKW-----VDKYASQRGLRHD 355
             ++GKW     V   A  RGLR +
Sbjct: 411 --NVGKWEGVDDVRSLARDRGLRKN 433


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/484 (36%), Positives = 276/484 (57%), Gaps = 16/484 (3%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N  +R L    + +  +L LY QM   G  P+ FT+PF F SCA+L     G  +H  
Sbjct: 23  SWNARLRELARQ-RHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGH 81

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDL-VSWNSMISGYSKMGYAK 202
           V K G + +  V  SLI+MY +C  + SARKVFDE    R+L V +N++I+GYS      
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +AV LF +MR+E    + +T++ ++  C     L  G  +    V+  +D +  +G+ L+
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY +CG++  AR++FD M  K ++TWNAMI+ YAQNGL+   + L+ +M++ G+ PD +
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL+GVLS+CA +GA   G+ V++     G   + F           CG++  A  +F+ M
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGM 321

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              N +SW A+I+    +G+   A+ LF+ M        P+   F+ VLSAC HAGL ++
Sbjct: 322 TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSD--ELPDGAAFVSVLSACSHAGLTEK 379

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G   F  M   +GL P  EHYSC+VDL  RAG L EA   +  M  + D  V GALLGAC
Sbjct: 380 GLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGAC 439

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  +N ++++   + ++E E +N G YV+ S IF+     +   ++R +MRE+ + K PG
Sbjct: 440 KIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPG 499

Query: 552 CSWI 555
           CS++
Sbjct: 500 CSYV 503



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 181/337 (53%), Gaps = 14/337 (4%)

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           SR     +N +I G +    ++S ++ L+ QM++ G+  +  T   +   CA  + L  G
Sbjct: 120 SRNLAVCYNALIAGYSLN-SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFG 178

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            S+H+   + GLD D  V + L+TMY RCG +D ARK+FD + E+ L++WN+MISGY++ 
Sbjct: 179 TSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQN 238

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G A   ++L+ +M     +PD +TLV VL SC  LG    G+ VE  +  +    N ++ 
Sbjct: 239 GLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLK 298

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +ALI+MY +CG LV AR +FD M  K+V++W A+I  Y  +G    A+ LF+ M  +   
Sbjct: 299 NALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL 358

Query: 319 PDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALK 366
           PD    + VLSAC+  G  + G +        Y  Q G  H     D+    G +++A K
Sbjct: 359 PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARK 418

Query: 367 VFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           +   M V  + + W A++ A   +     A L FE++
Sbjct: 419 LIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKV 455


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/500 (33%), Positives = 279/500 (55%), Gaps = 14/500 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F+    P   + N +I G     Q    +L+++  +++  L  D  +      +C+
Sbjct: 325 ARKVFNTFPNPTRQSHNALIVGYARQDQVLE-ALEIFRSLQKSYLDFDEISLSGALTACS 383

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +     G+ +H    K GLD +  V+++++ MYA+CG L  A  +FD++  +D VSWN+
Sbjct: 384 AIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNA 443

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+ + +  + +E + LF  M      PD+ T  SV+ +C     L  G  V G V+K+ 
Sbjct: 444 IIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSG 503

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           M L++++GSA+IDMY KCG LV A ++ + +  +  V+WN++I+ ++       A+  F+
Sbjct: 504 MGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFS 563

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           RM   GV PD  T   VL  CA++  ++LGK +     +  L  D++           CG
Sbjct: 564 RMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCG 623

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           ++ D+  +FE  P  + V+W+AMI A A++G   +A+ LFE M  +    +PN   FI V
Sbjct: 624 NMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQN--VKPNHTIFISV 681

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC H G VD+G   F  M S +GL P+ EHYSCMVDL  R+G ++EA + +E MP + 
Sbjct: 682 LRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEA 741

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D+++   LLG C+ Q N +V+++    LL+++  +S  YV+ S ++A   MW + AK+R+
Sbjct: 742 DDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRS 801

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            M+   + K PGCSWI + D
Sbjct: 802 FMKNYKLKKEPGCSWIQVRD 821



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 217/438 (49%), Gaps = 20/438 (4%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K  ++A  +F ++   N   ++ +I G      +++  LKLY  M   G+     T+   
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRN-DRFTEGLKLYKVMLDEGMGVSQATFASA 277

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
           F SCA L A   G  +H+   K     D+ V  + + MYA+C ++  ARKVF+       
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTR 337

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            S N++I GY++     EA+E+F  +++     DEI+L   L +C  +   + G  + G 
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            VK  +D N  + + ++DMY KCGAL+ A  +FD M  KD V+WNA+I A+ QN    E 
Sbjct: 398 AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEET 457

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + LF  M  + + PD  T   V+ ACA   AL+ G  V     + G+  D F        
Sbjct: 458 LALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDM 517

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG + +A K+ E +     VSWN++IS  +   +   AL  F RM + G    P++ 
Sbjct: 518 YCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVG--VIPDNF 575

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFV 472
           T+  VL  C +   V+ G+++   +     L   S+ Y  S +VD+Y++ G++ ++    
Sbjct: 576 TYATVLDICANLATVELGKQIHGQI---LKLQLHSDVYIASTIVDMYSKCGNMQDSRIMF 632

Query: 473 ERMPEKVDEIVLGALLGA 490
           E+ P++ D +   A++ A
Sbjct: 633 EKAPKR-DYVTWSAMICA 649



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 135/501 (26%), Positives = 236/501 (47%), Gaps = 57/501 (11%)

Query: 30  LLKKCPSTKTV---QQIHTQMLIN-FIQK---PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           + +KC + K +   +Q H Q+ +  F+      N LL       + NYA  +F ++ + +
Sbjct: 44  IFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRD 103

Query: 83  EYAFNVMIRGL--------------------TTAWQK----------YSHSLKLYYQMKR 112
             ++N MI G                       +W            +  S++++ +M+ 
Sbjct: 104 VISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRL 163

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           L ++ D  T+  V  +C  +     G+ VH    ++G D D     +L+ MY+ C KLD 
Sbjct: 164 LEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDH 223

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A  +F E+ ER+ V W+++I+GY +     E ++L+  M +E     + T  S   SC  
Sbjct: 224 AFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAG 283

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L    LG  +  + +K     +  +G+A +DMY KC  +V AR+VF+   N    + NA+
Sbjct: 284 LSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNAL 343

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YA+     EA+ +F  ++ + ++ D+I+L G L+AC++I     G  +   A + GL
Sbjct: 344 IVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGL 403

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +I            CG++ +A  +F+DM + + VSWNA+I+A   N    E L LF  
Sbjct: 404 DFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVS 463

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDL 458
           M +      P+D TF  V+ AC     ++ G  +   ++ S  GL    + +  S ++D+
Sbjct: 464 MLR--STMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGL----DWFVGSAIIDM 517

Query: 459 YARAGHLSEAWDFVERMPEKV 479
           Y + G L EA    ER+ E+ 
Sbjct: 518 YCKCGMLVEAEKIHERLEERT 538



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 188/421 (44%), Gaps = 46/421 (10%)

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
            T+  +F  C+NL A+N G   H+ +   G      VS+ L+  Y +C  L+ A  VFD+
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 180 IRERDLVSWNSMISGYSKM-------------------------------GYAKEAVELF 208
           + +RD++SWN+MI GY+ +                               G+ ++++E+F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            +MR  E   D  T   VL +C  + D  LG  V    ++   D +   G+AL+DMY  C
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
             L  A  +F  M  ++ V W+A+I  Y +N    E + L+  M   G+   + T     
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAF 278

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
            +CA + A +LG  +  YA +    +D             C  + DA KVF   P     
Sbjct: 279 RSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQ 338

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           S NA+I   A   +  EAL +F  + K       ++++  G L+AC       EG +L  
Sbjct: 339 SHNALIVGYARQDQVLEALEIFRSLQK--SYLDFDEISLSGALTACSAIKGYLEGIQLHG 396

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
           L +   GL       + ++D+YA+ G L EA    + M  K D +   A++ A ++ ++ 
Sbjct: 397 L-AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAAHEQNEHV 454

Query: 498 D 498
           +
Sbjct: 455 E 455



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 116/300 (38%), Gaps = 47/300 (15%)

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           ++T   +   C +L  +  GK     +         ++ + L+  Y KC  L  A  VFD
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 280 AMVNKDVVTWNAMITAYA-------------------------------QNGLSNEAIML 308
            M  +DV++WN MI  YA                               QNG   ++I +
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F +M+   +  D  T   VL AC  I    LG  V   A Q G   D+            
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYST 217

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C  +D A  +F +MP  N V W+A+I+    N R  E L L++ M  EG     +  TF 
Sbjct: 218 CKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGV--SQATFA 275

Query: 418 GVLSACVHAGLVDEGRRLFDL-MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
               +C      + G +L    + ++FG    +   +  +D+YA+   + +A       P
Sbjct: 276 SAFRSCAGLSAFELGTQLHAYALKTNFGY--DNIVGTATLDMYAKCDRMVDARKVFNTFP 333


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 291/548 (53%), Gaps = 21/548 (3%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPN 82
           ++  C  ++ ++   ++H  ++     K  F    ++D    L D   A+++F ++   +
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETD 267

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N  I G         H+L+L  QMK  GL P+ FT   +  +CA   A N G  +H
Sbjct: 268 VVSWNAFISGCVLHGHD-QHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIH 326

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K   D D++++  L+ MYA+ G LD A+KVFD I +RDLV WN++ISG S      
Sbjct: 327 GFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHA 386

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ LF RMR+E F  +  TL +VL S   L  +   + V     K     + ++ + LI
Sbjct: 387 EALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLI 446

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KC  L  A RVF+   + D++ + +MITA +Q     +AI LF  M   G++PD  
Sbjct: 447 DSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPF 506

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            L  +L+ACAS+ A + GK V  +  +R    D+F           CGSI+DA   F  +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGL 566

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P    VSW+AMI  LA +G    AL +F RM  E     PN +T   VL AC HAGLVDE
Sbjct: 567 PEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDE--HISPNHITMTSVLCACNHAGLVDE 624

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +R F+ M   FG+    EHY+CM+DL  RAG L +A + V  MP + +  V GALL A 
Sbjct: 625 AKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAAS 684

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  ++ ++ +   + L  +E   SG +V+ +  +A+  MWDD AK+R LM++  V K P 
Sbjct: 685 RVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPA 744

Query: 552 CSWIGIDD 559
            SW+ + D
Sbjct: 745 MSWVELKD 752



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 228/466 (48%), Gaps = 49/466 (10%)

Query: 92  GLTTAWQK---YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           GL +A+ K    SH++K++ +M   G++P+ F +  V  +C     L  G  VH+ V + 
Sbjct: 172 GLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRT 231

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G D+D   +++L+ MY++ G +  A  VF ++ E D+VSWN+ ISG    G+ + A+EL 
Sbjct: 232 GYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELL 291

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            +M+    +P+  TL S+L +C   G   LG+ + GF+VK   D + Y+   L+DMY K 
Sbjct: 292 LQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKH 351

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G L  A++VFD +  +D+V WNA+I+  +      EA+ LF RM+  G + ++ TL  VL
Sbjct: 352 GLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
            + AS+ A+   + V   A + G   D             C  ++ A +VFE     + +
Sbjct: 412 KSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDII 471

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF- 436
           ++ +MI+AL+      +A+ LF  M ++G    P+      +L+AC      ++G+++  
Sbjct: 472 AFTSMITALSQCDHGEDAIKLFMEMLRKG--LDPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 437 -----DLMSSSF------------GLIPKSE------------HYSCMVDLYARAGHLSE 467
                  MS  F            G I  ++             +S M+   A+ GH   
Sbjct: 530 HLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKR 589

Query: 468 AWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           A D   RM ++    + I + ++L AC      D ++R    + E+
Sbjct: 590 ALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 237/506 (46%), Gaps = 34/506 (6%)

Query: 25  EKLLSLLKKCPSTKTVQQ---IHTQMLIN--FIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           E +  LL +  +T+++ Q   IH  +L +  F    N LL      +    A  +F +I 
Sbjct: 5   ETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIP 64

Query: 80  RPNEYAFNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            P   +++     L TA+   +    +L  +  M+   ++ + F  P V + CA      
Sbjct: 65  DPCHVSWS----SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVV-LKCAPDAGF- 118

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-ERDLVSWNSMISGY 195
            G  +H+     GL  D  V+++L+ MY   G +D AR VFDE   ER+ VSWN ++S Y
Sbjct: 119 -GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            K      AV++FG M      P+E     V+ +C    DL  G+ V   V++   D + 
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           +  +AL+DMY K G +  A  VF  +   DVV+WNA I+    +G    A+ L  +MK +
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDA 364
           G+ P+  TL  +L ACA  GA +LG+ +  +  +     D +            G +DDA
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDA 357

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVF+ +P  + V WNA+IS  +   +  EAL LF RM KEG     N  T   VL +  
Sbjct: 358 KKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDV--NRTTLAAVLKSTA 415

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
               + + R++  L +   G +  S   + ++D Y +   L+ A+   E+     D I  
Sbjct: 416 SLEAISDTRQVHAL-AEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGS-YDIIAF 473

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEI 510
            +++ A  +    D  +  ++L +E+
Sbjct: 474 TSMITALSQ---CDHGEDAIKLFMEM 496


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 285/496 (57%), Gaps = 14/496 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   N  ++  MI G  ++      +++++  M+R     + F    V  +  
Sbjct: 172 ARKLFDRMPERNTVSWATMISGYASS-DIADKAVEVFELMRREEEIQNEFALTSVLSALT 230

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           + + +  G  VHS   K GL     V+++L+TMYA+CG LD A + F+   +++ ++W++
Sbjct: 231 SDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSA 290

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M++GY++ G + +A++LF +M     LP E TLV V+ +C DL  +V GK +  F  K  
Sbjct: 291 MVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLG 350

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
             L  Y+ SA++DMY KCG+L  AR+ F+ +   DVV W ++IT Y QNG     + L+ 
Sbjct: 351 FGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYG 410

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCG 359
           +M+   V P+++T+  VL AC+S+ ALD GK +     + G + ++            CG
Sbjct: 411 KMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCG 470

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+DD   +F  MP  + +SWNAMIS L+ NG  ++AL LFE+M  EG   +P+ VTF+ +
Sbjct: 471 SLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEG--IKPDPVTFVNL 528

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H GLVD G   F +M   F + P  EHY+CMVD+ +RAG L+EA +F+E      
Sbjct: 529 LSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDH 588

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
              +   LLGAC+  +N ++     + L+E+ S  S  YV+ S I+  L   ++  ++R 
Sbjct: 589 GLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRR 648

Query: 540 LMREKGVSKTPGCSWI 555
           +M+ +GV+K PGCSWI
Sbjct: 649 IMKARGVNKEPGCSWI 664



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 158/510 (30%), Positives = 257/510 (50%), Gaps = 32/510 (6%)

Query: 26  KLLSLLKKCPSTKTV---QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           +LL  L +C   K +   + +H ++L    I+ I   N  L         ++A  LF  I
Sbjct: 13  QLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSI 72

Query: 79  SR--PNEYAFNVMIRGLTT--AWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLL 133
           +    ++ ++N +I   +   +    S ++ L+ +M R   + P+  T   VF + +NL 
Sbjct: 73  NDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLS 132

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G   HS   K G   D +V  SL+ MY + G +  ARK+FD + ER+ VSW +MIS
Sbjct: 133 DVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMIS 192

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+    A +AVE+F  MR EE + +E  L SVL +      +  G+ V    +KN +  
Sbjct: 193 GYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLA 252

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + +AL+ MY KCG+L  A R F+   +K+ +TW+AM+T YAQ G S++A+ LFN+M 
Sbjct: 253 IVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMH 312

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +GV P + TL+GV++AC+ + A+  GK +  +A + G    ++           CGS+ 
Sbjct: 313 SSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLA 372

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA K FE +   + V W ++I+    NG     L L+ +M  E     PN++T   VL A
Sbjct: 373 DARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQME--RVIPNELTMASVLRA 430

Query: 423 CVHAGLVDEGRRLF-DLMSSSFGL-IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           C     +D+G+++   ++   F L +P     S M   Y + G L + +    RMP + D
Sbjct: 431 CSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAM---YTKCGSLDDGYLIFWRMPSR-D 486

Query: 481 EIVLGALL-GACQKQKNTDVSQRVMQLLLE 509
            I   A++ G  Q        +   ++LLE
Sbjct: 487 VISWNAMISGLSQNGHGNKALELFEKMLLE 516



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 172/318 (54%), Gaps = 5/318 (1%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LS L       T +Q+H+  + N     +   N L+         + A   F      N
Sbjct: 225 VLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKN 284

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              ++ M+ G          +LKL+ +M   G+ P  FT   V  +C++L A+  G  +H
Sbjct: 285 SITWSAMVTGYAQGGDS-DKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMH 343

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S  FK+G     +V  +++ MYA+CG L  ARK F+ +++ D+V W S+I+GY + G  +
Sbjct: 344 SFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYE 403

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
             + L+G+M+ E  +P+E+T+ SVL +C  L  L  GK +   ++K    L   +GSAL 
Sbjct: 404 GGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALS 463

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG+L     +F  M ++DV++WNAMI+  +QNG  N+A+ LF +M   G+ PD +
Sbjct: 464 AMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPV 523

Query: 323 TLIGVLSACASIGALDLG 340
           T + +LSAC+ +G +D G
Sbjct: 524 TFVNLLSACSHMGLVDRG 541



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 133/270 (49%), Gaps = 20/270 (7%)

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           F P    L+  L  C    +++ G+ +   ++K     + Y+ +  +++Y K   L  A 
Sbjct: 7   FPPQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHAL 66

Query: 276 RVFDAM--VNKDVVTWNAMITAYAQNGLSNE---AIMLFNRMKYA-GVNPDKITLIGVLS 329
            +FD++   +KD V+WN++I A++QN  S+    AI LF RM  A  V P+  TL GV S
Sbjct: 67  TLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFS 126

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVS 378
           A +++  +  GK     A + G   D++ GS           + DA K+F+ MP  N VS
Sbjct: 127 AASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVS 186

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W  MIS  A +  A +A+ +FE M +E      N+     VLSA      V  GR++  L
Sbjct: 187 WATMISGYASSDIADKAVEVFELMRRE--EEIQNEFALTSVLSALTSDVFVYTGRQVHSL 244

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
              + GL+      + +V +YA+ G L +A
Sbjct: 245 AIKN-GLLAIVSVANALVTMYAKCGSLDDA 273


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 182/504 (36%), Positives = 279/504 (55%), Gaps = 29/504 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS--LKLYYQMKRLGLKPDNFTYPFVFIS 128
           A  +F QI  PN   +N M RG +   Q  SH   + L+ QMK L + P+ FT+P +  S
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYS---QNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C  + AL  G  VH  V K G   +  V+ +LI MYA  G + +A +VF E+ ER++++W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-EGFVV 247
            +MI+GY        A  LF    E     D +   +++    +  D++  + + +    
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPER----DIVLWNTMISGYIEAKDVIRARELFDKMPN 176

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+ M  N      +++ Y   G ++   R+F+ M  ++V +WNA+I  Y +NG  +E + 
Sbjct: 177 KDVMSWN-----TVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLS 231

Query: 308 LFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            F RM   G V P+  TL+ VLSACA +GALDLGKWV  YA   G + +++         
Sbjct: 232 AFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMY 291

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG ++ AL VF+ M   + +SWN +I  LA +G   +AL LF  M   G    P+ +T
Sbjct: 292 AKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAG--ENPDGIT 349

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           FIG+L AC H GLV++G   F  M+  + ++P+ EHY C+VDL  RAG L+ A DF+ +M
Sbjct: 350 FIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKM 409

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + D ++  ALLGAC+  KN ++++  ++ L+E E  N  NYV+ S I+ +   W D A
Sbjct: 410 PIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVA 469

Query: 536 KMRALMREKGVSKTPGCSWIGIDD 559
           +++  MR+ G  K PGCS I ++D
Sbjct: 470 RLKVAMRDTGFKKLPGCSLIEVND 493



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 12/327 (3%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           +++A KVFD+I E +   WN+M  GYS+    K+ + LF +M+  + +P+  T   +L S
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  +  L  G+ V  FV+K+    N ++ + LIDMY   GA+  A RVF  M+ ++V+ W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
            AMI  Y        A  LF+      +      + G + A   I A +L    DK  ++
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRAREL---FDKMPNK 177

Query: 350 RGLRHDIFC------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             +  +         G +    ++FE+MP  N  SWNA+I     NG   E L  F+RM 
Sbjct: 178 DVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRML 237

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +G    PND T + VLSAC   G +D G+ +  + + S G        + ++D+YA+ G
Sbjct: 238 VDGTVV-PNDATLVNVLSACARLGALDLGKWV-HVYAESHGYKGNVYVRNALMDMYAKCG 295

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGA 490
            +  A D  + M  K D I    ++G 
Sbjct: 296 VVETALDVFKSMDNK-DLISWNTIIGG 321


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 287/508 (56%), Gaps = 18/508 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D   A  +F ++   N   + +MI  L   +     ++ L+  M   G +PD FT   V 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQ-FGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC---GKLDSARKVFDEIRER 183
            +CAN+  L  G  +HS   + GL  D  V   LI MYA+C   G + +ARK+FD+I + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 184 DLVSWNSMISGY-SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           ++ SW +MI+GY  K GY +EA++LF  M     +P+  T  S L +C +L  L +G+ V
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
               VK        + ++LI MY + G +  AR+ FD +  K+++++N +I AYA+N  S
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
            EA+ LFN ++  G+     T   +LS  ASIG +  G+ +     + GL+ +       
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG+I+ A +VFEDM   N +SW ++I+  A +G A +AL LF +M +EG   RP
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEG--VRP 576

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           N+VT+I VLSAC H GLV+EG + F  M +  G+IP+ EHY+C+VD+  R+G LSEA  F
Sbjct: 577 NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQF 636

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +  MP K D +V    LGAC+   N ++ +   ++++E E  +   Y++ S ++A++  W
Sbjct: 637 INSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKW 696

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
           D+ + +R  M+EK + K  GCSW+ +++
Sbjct: 697 DEVSNIRKAMKEKXLIKEAGCSWVEVEN 724



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 201/394 (51%), Gaps = 22/394 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLI 161
           +L  +  M   G  P+ + +     +C+    ++ G S+   V K G L  D  V   LI
Sbjct: 152 ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLI 211

Query: 162 TMYARC-GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
            M+ +  G L SA KVF+++ ER+ V+W  MI+   + GYA EA++LF  M    + PD 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDR 271

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALVPARRV 277
            TL  V+ +C ++  L+LG+ +    +++ + L+  +G  LI+MY KC   G++  AR++
Sbjct: 272 FTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKI 331

Query: 278 FDAMVNKDVVTWNAMITAYAQ-NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           FD +++ +V +W AMIT Y Q  G   EA+ LF  M    V P+  T    L ACA++ A
Sbjct: 332 FDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAA 391

Query: 337 LDLGKWVDKYASQRGLRHDIFC------------GSIDDALKVFEDMPVTNEVSWNAMIS 384
           L +G+ V  +A + G    + C            G IDDA K F+ +   N +S+N +I 
Sbjct: 392 LRIGEQVFTHAVKLGFS-SVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
           A A N  + EAL LF  +  +G  A     TF  +LS     G + +G ++   +  S G
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASA--FTFASLLSGAASIGTIGKGEQIHARVIKS-G 507

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L       + ++ +Y+R G++  A+   E M ++
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR 541



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 211/442 (47%), Gaps = 36/442 (8%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
            M   G  PD  TY      C    + + G  VH  + +  L  D    +SLI++Y++CG
Sbjct: 56  HMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCG 115

Query: 169 KLDSARKVFDEI-RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           + + A  +F  +   RDL+SW++M+S ++       A+  F  M E  + P+E    +  
Sbjct: 116 QWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAAT 175

Query: 228 GSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKD 285
            +C     + +G  + GFV+K   +  +  +G  LIDM+ K  G LV A +VF+ M  ++
Sbjct: 176 RACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
            VTW  MIT   Q G + EAI LF  M ++G  PD+ TL GV+SACA++  L LG+ +  
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 346 YASQRGLRHD--IFC------------GSIDDALKVFEDMPVTNEVSWNAMISA-LAFNG 390
            A + GL  D  + C            GS+  A K+F+ +   N  SW AMI+  +   G
Sbjct: 296 QAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGG 355

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF----DLMSSSFGLI 446
              EAL LF  M        PN  TF   L AC +   +  G ++F     L  SS   +
Sbjct: 356 YDEEALDLFRGMILT--HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCV 413

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
             S     ++ +YAR+G + +A    + + EK + I    ++ A  K  N   S+  ++L
Sbjct: 414 ANS-----LISMYARSGRIDDARKAFDILFEK-NLISYNTVIDAYAKNLN---SEEALEL 464

Query: 507 LLEIESSNSGNYVISSKIFANL 528
             EIE    G    S+  FA+L
Sbjct: 465 FNEIEDQGMG---ASAFTFASL 483



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 17/278 (6%)

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G   +A+     M  +   PD  T    L  C       +G  V   + ++ + L+    
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 259 SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           ++LI +Y KCG    A  +F  M  ++D+++W+AM++ +A N +   A++ F  M   G 
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIF--CGSID----------DA 364
            P++        AC++   + +G  +  +  + G L+ D+   CG ID           A
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVFE MP  N V+W  MI+ L   G A EA+ LF  M   G    P+  T  GV+SAC 
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSG--YEPDRFTLSGVISACA 282

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
           +  L+  G++L    +   GL        C++++YA+ 
Sbjct: 283 NMELLLLGQQLHS-QAIRHGLTLDRCVGCCLINMYAKC 319



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 17/194 (8%)

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG  ++AI     M + G +PD  T    L  C    + D+G  V +  +Q  L+ D   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 358 ----------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEG 406
                     CG  + A  +F  M  + + +SW+AM+S  A N     ALL F  M + G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC-MVDLYARA-GH 464
               PN+  F     AC  A  V  G  +F  +  + G +       C ++D++ +  G 
Sbjct: 164 --YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKT-GYLQSDVCVGCGLIDMFVKGRGD 220

Query: 465 LSEAWDFVERMPEK 478
           L  A+   E+MPE+
Sbjct: 221 LVSAFKVFEKMPER 234


>gi|115484979|ref|NP_001067633.1| Os11g0256100 [Oryza sativa Japonica Group]
 gi|62734753|gb|AAX96862.1| Similar to selenium-binding protein [Oryza sativa Japonica Group]
 gi|77549625|gb|ABA92422.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113644855|dbj|BAF27996.1| Os11g0256100 [Oryza sativa Japonica Group]
 gi|125597201|gb|EAZ36981.1| hypothetical protein OsJ_21321 [Oryza sativa Japonica Group]
          Length = 582

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 198/536 (36%), Positives = 292/536 (54%), Gaps = 19/536 (3%)

Query: 43  IHTQMLINFIQ-KPNFL--LIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK 99
           IH + ++  I   P F   LI  +      YA  +F      + Y +N ++R    +   
Sbjct: 44  IHARAVVLGISANPAFATSLITAVAPACLAYARRVFDAAPSRDAYMWNTLLRAHAHSRAH 103

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
              +L LY +M+  G+ PD++TYP V  +CA   A   G + H    +  L  D  VS +
Sbjct: 104 ARDALALYARMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALARDGFVSSA 163

Query: 160 LITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           LI+MY++ G++  A +VF E  + R +VSW +M++GY++  +  EAV LF  M     LP
Sbjct: 164 LISMYSQEGEVRDAERVFAERDDARTVVSWTAMVAGYAQNCFFGEAVTLFSDMVAAGVLP 223

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +EITL+S L        L +G+ V GFVVK   D N  M +ALI MYG+CG+   AR +F
Sbjct: 224 NEITLISFLPCLRGQEWLPVGEMVHGFVVKLGFDANVPMVNALITMYGRCGSAPVARVLF 283

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           + M ++ +V+WN M+  Y Q+G   +AI  F RM    V  D +TL+ VLSACA  GAL 
Sbjct: 284 NGMSSRTLVSWNTMVAMYEQHGDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARSGALG 343

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE--VSWNAMISA 385
            GKWV + A   GL  D             CG I  A +VF    +     VSW+AMI+A
Sbjct: 344 TGKWVHELARSHGLDTDARIGNVLVDMYAKCGEIAYAKEVFHSHGLRGHSVVSWSAMINA 403

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G A EAL LF  M  EG   RPN  TF  VL AC H+GLVDEG + F+ +++ + +
Sbjct: 404 YANHGEAEEALKLFSLMRNEG--VRPNSFTFTAVLMACCHSGLVDEGLKHFNSIATDYQM 461

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EHY+CMVD+  RAG L EA+  +  MP + D+ V GA LG C+     ++++ V +
Sbjct: 462 SPTLEHYACMVDMLGRAGRLVEAYGIIRGMPIRPDKCVWGAFLGGCRLHGMVELAEYVAK 521

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPK 561
            L +  S++   YV+ + ++    M +D+ ++R +M+E  + KT G S +  D  +
Sbjct: 522 ELFDSGSNDVTFYVLMANMYFEAGMLEDAERIRGVMKEMELKKTAGHSLVCTDRER 577


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 186/544 (34%), Positives = 308/544 (56%), Gaps = 25/544 (4%)

Query: 36  STKTVQQIHT-QMLINFIQKPNF---------LLIRIIDLKDFNYASLLFHQISRPNEYA 85
           S  +++ +H  + L  FI K  F         L+   +  +  + A  +F +++  +  +
Sbjct: 53  SFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS 112

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N +I G  +        L ++ QM   G++ D  T   VF  CA+   ++ G +VHS  
Sbjct: 113 WNSIINGYVSNGLA-EKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 171

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K     +D   ++L+ MY++CG LDSA+ VF E+ +R +VS+ SMI+GY++ G A EAV
Sbjct: 172 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 231

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           +LF  M EE   PD  T+ +VL  C     L  GK V  ++ +N +  + ++ +AL+DMY
Sbjct: 232 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 291

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITL 324
            KCG++  A  VF  M  KD+++WN +I  Y++N  +NEA+ LFN + +    +PD+ T+
Sbjct: 292 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 351

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGL---RH------DIF--CGSIDDALKVFEDMPV 373
             VL ACAS+ A D G+ +  Y  + G    RH      D++  CG++  A  +F+D+  
Sbjct: 352 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 411

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + VSW  MI+    +G   EA+ LF +M + G  A  ++++F+ +L AC H+GLVDEG 
Sbjct: 412 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA--DEISFVSLLYACSHSGLVDEGW 469

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           R F++M     + P  EHY+C+VD+ AR G L +A+ F+E MP   D  + GALL  C+ 
Sbjct: 470 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             +  ++++V + + E+E  N+G YV+ + I+A  + W+   ++R  + ++G+ K PGCS
Sbjct: 530 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 589

Query: 554 WIGI 557
           WI I
Sbjct: 590 WIEI 593



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/402 (33%), Positives = 217/402 (53%), Gaps = 14/402 (3%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F ++       +N+++  L  +   +S S+ L+ +M   G++ D++T+  V  S ++L +
Sbjct: 1   FDEVKIEKALFWNILMNELAKS-GDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 59

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           ++ G  +H  + K G  E + V +SL+  Y +  ++DSARKVFDE+ ERD++SWNS+I+G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y   G A++ + +F +M       D  T+VSV   C D   + LG+ V    VK      
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
               + L+DMY KCG L  A+ VF  M ++ VV++ +MI  YA+ GL+ EA+ LF  M+ 
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            G++PD  T+  VL+ CA    LD GK V ++  +  L  DIF           CGS+ +
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  VF +M V + +SWN +I   + N  A+EAL LF  + +E   + P++ T   VL AC
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS-PDERTVACVLPAC 358

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
                 D+GR +   +  + G        + +VD+YA+ G L
Sbjct: 359 ASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGAL 399


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 286/508 (56%), Gaps = 18/508 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D   A  +F ++   N   + +MI  L   +     ++ L+ +M   G +PD FT   V 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQ-FGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC---GKLDSARKVFDEIRER 183
            +CAN+  L  G  +HS   + GL  D  V   LI MYA+C   G + +ARK+FD+I + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 184 DLVSWNSMISGY-SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           ++ SW +MI+GY  K GY +EA++LF  M     +P+  T  S L +C +L  L +G+ V
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
               VK        + ++LI MY + G +  AR+ FD +  K+++++N +I AYA+N  S
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
            EA+ LFN ++  G+     T   +LS  ASIG +  G+ +     + GL+ +       
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG+I+ A +VFEDM   N +SW ++I+  A +G A +AL LF +M +EG   RP
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEG--VRP 576

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           N VT+I VLSAC H GLV+EG + F  M +  G+IP+ EHY+CMVD+  R+G LSEA  F
Sbjct: 577 NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQF 636

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +  MP K D +V    LGAC+   N ++ +   ++++E E  +   Y++ S ++A+   W
Sbjct: 637 INSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKW 696

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
           D+ + +R  M+EK + K  GCSW+ +++
Sbjct: 697 DEVSNIRKAMKEKNLIKEAGCSWVEVEN 724



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 201/394 (51%), Gaps = 22/394 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLI 161
           +L  +  M   G  P+ + +     +C+    ++ G S+   V K G L  D  V   LI
Sbjct: 152 ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLI 211

Query: 162 TMYARC-GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
            M+ +  G L SA KVF+++ ER+ V+W  MI+   + GYA EA++LF  M    + PD 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDR 271

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALVPARRV 277
            TL  V+ +C ++  L+LG+ +    +++ + L+  +G  LI+MY KC   G++  AR++
Sbjct: 272 FTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKI 331

Query: 278 FDAMVNKDVVTWNAMITAYAQ-NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           FD +++ +V +W AMIT Y Q  G   EA+ LF  M    V P+  T    L ACA++ A
Sbjct: 332 FDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAA 391

Query: 337 LDLGKWVDKYASQRGLRHDIFC------------GSIDDALKVFEDMPVTNEVSWNAMIS 384
           L +G+ V  +A + G    + C            G IDDA K F+ +   N +S+N +I 
Sbjct: 392 LRIGEQVFTHAVKLGFS-SVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
           A A N  + EAL LF  +  +G  A     TF  +LS     G + +G ++   +  S G
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASA--FTFASLLSGAASIGTIGKGEQIHARVIKS-G 507

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L       + ++ +Y+R G++  A+   E M ++
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDR 541



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 210/442 (47%), Gaps = 36/442 (8%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
            M   G  PD  TY      C    + + G  VH  + +  L  D    +SLI++Y++CG
Sbjct: 56  HMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCG 115

Query: 169 KLDSARKVFDEI-RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           + + A  +F  +   RDL+SW++M+S ++       A+  F  M E  + P+E    +  
Sbjct: 116 QWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAAT 175

Query: 228 GSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKD 285
            +C     + +G  + GFVVK   +  +  +G  LIDM+ K  G LV A +VF+ M  ++
Sbjct: 176 RACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
            VTW  MIT   Q G + EAI LF  M  +G  PD+ TL GV+SACA++  L LG+ +  
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 346 YASQRGLRHD--IFC------------GSIDDALKVFEDMPVTNEVSWNAMISA-LAFNG 390
            A + GL  D  + C            GS+  A K+F+ +   N  SW AMI+  +   G
Sbjct: 296 QAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGG 355

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF----DLMSSSFGLI 446
              EAL LF  M        PN  TF   L AC +   +  G ++F     L  SS   +
Sbjct: 356 YDEEALDLFRGMILT--HVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCV 413

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
             S     ++ +YAR+G + +A    + + EK + I    ++ A  K  N   S+  ++L
Sbjct: 414 ANS-----LISMYARSGRIDDARKAFDILFEK-NLISYNTVIDAYAKNLN---SEEALEL 464

Query: 507 LLEIESSNSGNYVISSKIFANL 528
             EIE    G    S+  FA+L
Sbjct: 465 FNEIEDQGMG---ASAFTFASL 483



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 17/278 (6%)

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G   +A+     M  +   PD  T    L  C       +G  V   + ++ + L+    
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 259 SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           ++LI +Y KCG    A  +F  M  ++D+++W+AM++ +A N +   A++ F  M   G 
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIF--CGSID----------DA 364
            P++        AC++   + +G  +  +  + G L+ D+   CG ID           A
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVFE MP  N V+W  MI+ L   G A EA+ LF  M   G    P+  T  GV+SAC 
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSG--YEPDRFTLSGVISACA 282

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
           +  L+  G++L    +   GL        C++++YA+ 
Sbjct: 283 NMELLLLGQQLHS-QAIRHGLTLDRCVGCCLINMYAKC 319



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG  ++AI     M + G +PD  T    L  C    + D+G  V +  +Q  L+ D   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 358 ----------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEG 406
                     CG  + A  +F+ M  + + +SW+AM+S  A N     ALL F  M + G
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC-MVDLYARA-GH 464
               PN+  F     AC  A  V  G  +F  +  + G +       C ++D++ +  G 
Sbjct: 164 --YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKT-GYLQSDVCVGCGLIDMFVKGRGD 220

Query: 465 LSEAWDFVERMPEK 478
           L  A+   E+MPE+
Sbjct: 221 LVSAFKVFEKMPER 234


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 286/514 (55%), Gaps = 63/514 (12%)

Query: 103 SLKLYYQMKR---LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           +L++ ++M     L L+PD  T   +  +CA++ AL HG  VH    + GL +D  V ++
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNA 274

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE---- 215
           L++MYA+C K++ A KVF+ I+++D+VSWN+M++GYS++G    A+ LF  M+EE+    
Sbjct: 275 LVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLD 334

Query: 216 -------------------------------FLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
                                            P+ +TL S+L  C  +G L+ GK    
Sbjct: 335 VITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHA 394

Query: 245 FVVKNKMDLNF-------YMGSALIDMYGKCGALVPARRVFDAMVNKD--VVTWNAMITA 295
           +V+KN ++LN+        + + LIDMY KC +   AR +FD++  KD  VVTW  MI  
Sbjct: 395 YVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGG 454

Query: 296 YAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           YAQ+G +N+A+ LF ++  +   + P+  TL   L ACA +G L LG+ +  YA +    
Sbjct: 455 YAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENE 514

Query: 354 HDIF------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
            ++              G ID A  VF++M + N VSW ++++    +GR  EAL LF++
Sbjct: 515 SEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQ 574

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M K G A   + +TF+ VL AC H+G+VD+G   F  M   FG+ P +EHY+CMVDL  R
Sbjct: 575 MQKLGFAV--DGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGR 632

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG L+EA + ++ M  +   +V  ALL A +   N ++ +     L E+ + N G+Y + 
Sbjct: 633 AGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLL 692

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           S ++AN + W D A++R+LM+  G+ K PGCSWI
Sbjct: 693 SNLYANARRWKDVARIRSLMKHTGIRKRPGCSWI 726



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 265/536 (49%), Gaps = 77/536 (14%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKD 67
           S H   T    P  +   L+SLL++C +    +  H Q+ ++ F +  ++ +   I+   
Sbjct: 17  SVHFYSTFTTSPPTI--PLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGA 74

Query: 68  FNYASLLFHQI--SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
              A  L  ++  S    + +N +IR  +        +L  Y QM+RLG  PD++T+PFV
Sbjct: 75  SAEAVSLLQRLIPSHSTVFWWNALIR-RSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFV 133

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-- 183
             +C  + +L HG SVH+ V   GL  +  + +S++ MY RCG LD A ++FDE+ ER  
Sbjct: 134 LKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKI 193

Query: 184 -DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---PDEITLVSVLGSCGDLGDLVLG 239
            D+VSWNS+++ Y + G ++ A+ +  RM     L   PD ITLV++L +C  +  L  G
Sbjct: 194 EDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHG 253

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT----- 294
           K V GF V+N +  + ++G+AL+ MY KC  +  A +VF+ +  KDVV+WNAM+T     
Sbjct: 254 KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQI 313

Query: 295 ------------------------------AYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
                                          YAQ G   EA+ +F +M+  G+ P+ +TL
Sbjct: 314 GSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTL 373

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRH----------------DIF--CGSIDDALK 366
             +LS CAS+GAL  GK    Y  +  L                  D++  C S   A  
Sbjct: 374 ASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARS 433

Query: 367 VFEDMPV--TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           +F+ +     N V+W  MI   A +G A++AL LF ++ K+  + +PN  T    L AC 
Sbjct: 434 IFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACA 493

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEAWDFVERM 475
             G +  GR+L      ++ L  ++E       +C++D+Y+++G +  A    + M
Sbjct: 494 RLGELRLGRQL-----HAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNM 544


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 313/557 (56%), Gaps = 23/557 (4%)

Query: 15  TELNDPSLLREKLLS---LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD---- 67
           TEL   S +R    +   +LK C S    +++H  +L    +   ++   +I L      
Sbjct: 138 TELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGA 197

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
              A  +F  +   +  ++N MI G        + +L++  +MK   +K D  T   +  
Sbjct: 198 VEVAHKVFVDMPVRDVGSWNAMISGFCQN-GNVAEALRVLDRMKTEEVKMDTVTVSSMLP 256

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
            CA    +  GV VH  V K GL+ D  VS++LI MY++ G+L  A++VFD +  RDLVS
Sbjct: 257 ICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVS 316

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNS+I+ Y +      A+  F  M      PD +T+VS+    G L D  +G+ V GFVV
Sbjct: 317 WNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVV 376

Query: 248 KNK-MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           + + ++++  +G+AL++MY K G++  AR VF+ + ++DV++WN +IT YAQNGL++EAI
Sbjct: 377 RCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAI 436

Query: 307 MLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
             +N M+    + P++ T + +L A + +GAL  G  +     +  L  D+F        
Sbjct: 437 DAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDM 496

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG ++DA+ +F ++P    V WNA+IS+L  +G   +AL LF+ M  +G   + + +
Sbjct: 497 YGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADG--VKADHI 554

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ +LSAC H+GLVDE +  FD M   + + P  +HY CMVDL+ RAG+L +A++ V  
Sbjct: 555 TFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSN 614

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP + D  + G LL AC+   N ++       LLE++S N G YV+ S I+AN+  W+ +
Sbjct: 615 MPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGA 674

Query: 535 AKMRALMREKGVSKTPG 551
            K+R+L R++G+ KTPG
Sbjct: 675 VKVRSLARDRGLRKTPG 691



 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 146/467 (31%), Positives = 249/467 (53%), Gaps = 23/467 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           + + C +    +Q+H  +L+    +   LL +++ L     D + +S  F  I R N ++
Sbjct: 57  VFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           +N M+        +Y  S+    ++  L G++PD +T+P V  +C   L+L  G  +H  
Sbjct: 117 WNSMVSAYVRR-GRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCW 172

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V K+G + D +V+ SLI +Y+R G ++ A KVF ++  RD+ SWN+MISG+ + G   EA
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + +  RM+ EE   D +T+ S+L  C    D+V G  V  +V+K+ ++ + ++ +ALI+M
Sbjct: 233 LRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINM 292

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y K G L  A+RVFD M  +D+V+WN++I AY QN     A+  F  M + G+ PD +T+
Sbjct: 293 YSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTV 352

Query: 325 IGVLSACASIGALDLGKWVDKYASQ-RGLRHDIFC-----------GSIDDALKVFEDMP 372
           + + S    +    +G+ V  +  + R L  DI             GSID A  VFE +P
Sbjct: 353 VSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP 412

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + +SWN +I+  A NG A EA+  +  M +EG    PN  T++ +L A  H G + +G
Sbjct: 413 SRDVISWNTLITGYAQNGLASEAIDAYNMM-EEGRTIVPNQGTWVSILPAYSHVGALQQG 471

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
            ++   +  +  L       +C++D+Y + G L +A      +P++ 
Sbjct: 472 MKIHGRLIKN-CLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQET 517


>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 461

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/457 (38%), Positives = 262/457 (57%), Gaps = 38/457 (8%)

Query: 12  LAFTELNDPSLLREKLLS--LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DL 65
           L FT    PSL+    L   LL+   S K ++ +H  +L     + ++L   II    D 
Sbjct: 2   LIFTNTTSPSLINALNLKNRLLQSFNSLKQLKHVHAALLRLGFDQGSYLWSMIIRSSFDF 61

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
            D  Y  L+F+QI  P+   +N MIRGL ++   ++ S++ YY M++ G  P+NFT+PFV
Sbjct: 62  NDTTYTRLIFNQIKEPDVVLYNTMIRGLVSS-DCFTESIEFYYSMRKKGFLPNNFTFPFV 120

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +CA LL    G+ +H+ V K+G D +  V+ SL+++YA+CG +D A K+ D I E ++
Sbjct: 121 IKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNI 180

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW ++ISGY  +G  +EA++LF RM E    PD  T+V VL +C  +GDL  G+W++ +
Sbjct: 181 VSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRY 240

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           + +N M  N ++ ++L+D+Y K G +  AR +FD M  +D+V+W+AMI  YA NGL  +A
Sbjct: 241 ITENVMARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDA 300

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW--------------------VDK 345
           + LF +M  AG+ PD   ++G L ACA +GAL+LG W                    +D 
Sbjct: 301 LDLFFKMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDM 360

Query: 346 YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           YA          CGS+  A +VF+ +   +   WNA IS LA NG    A  LF +M + 
Sbjct: 361 YAK---------CGSMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERF 411

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           G   +P+  TF+G+L  C HAGLVDEGR+ F  M  S
Sbjct: 412 G--IQPDGNTFVGLLCGCTHAGLVDEGRKYFHSMGRS 446



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 185/349 (53%), Gaps = 14/349 (4%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+++ ++G D+  ++   +I            R +F++I+E D+V +N+MI G      
Sbjct: 35  VHAALLRLGFDQGSYLWSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDC 94

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             E++E +  MR++ FLP+  T   V+ +C  L D  LG  +   VVK   D N ++ ++
Sbjct: 95  FTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTS 154

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ +Y KCG++  A ++ D +   ++V+W A+I+ Y   G   EAI LF RM   G+ PD
Sbjct: 155 LVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPD 214

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFE 369
             T++ VLSAC  IG L  G+W+D+Y ++  +  ++F            G+++ A  +F+
Sbjct: 215 SFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKARCLFD 274

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M   + VSW+AMI   A NG   +AL LF +M   G   +P+    +G L AC   G +
Sbjct: 275 GMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAG--LKPDHYAMVGFLCACARLGAL 332

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           + G    +LM  +          + ++D+YA+ G +++AW+  + +  K
Sbjct: 333 ELGDWGSNLMDRT-EFFTNHVLGTALIDMYAKCGSMAKAWEVFKGIKGK 380


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 281/508 (55%), Gaps = 30/508 (5%)

Query: 69  NYASLLF----HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           N+A  +F    H+I   N +AFN +I G  T         + Y +M+  G+ PD FT+P 
Sbjct: 9   NFALSIFSDPTHEI---NVFAFNAIISGFITNGFP-EEGFEFYQKMRNEGVMPDKFTFPC 64

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
              +C ++L +     +H  +FK GL+ D  +  +L+  Y + G ++ A+  F+E+  RD
Sbjct: 65  AIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRD 121

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +V WN+M++GY+++G  +  +E F RM +E  +P   T+  +L     +GDL  G+ + G
Sbjct: 122 VVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHG 181

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           F +K   D    + ++LIDMYGKC  +  A  +F+ M  KD+ +WN++ + + Q G  + 
Sbjct: 182 FAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDG 241

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--------- 355
            + L +RM  AG+ PD +T+  VL AC+ + AL  G+ +  Y    GL  D         
Sbjct: 242 TLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLL 301

Query: 356 --------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CGS+ DA  VFE M   +  SWN MI     +G  +EAL +F RM +   
Sbjct: 302 KNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV-- 359

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             +P++VTF+GVLSAC HAG V +GR     M S + + P  EHY+C++D+  RAG L E
Sbjct: 360 QLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDE 419

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A++    MP + + +V  ALL AC+  K+  +++   Q + E+E  + G+YV+ S ++  
Sbjct: 420 AYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGA 479

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +  +++  ++R  MR++ V KTPGCSWI
Sbjct: 480 VGRYEEVLEVRHTMRQQNVRKTPGCSWI 507


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 179/495 (36%), Positives = 278/495 (56%), Gaps = 14/495 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  +   N  ++  MI G        + ++ +++Q+ + G +PD F    +  SC 
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLD-TEAMSMFWQLSQAGWQPDVFACTSILNSCG 350

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L A+  G  VH+ V K  L+ D++V ++LI MYA+C  L  AR VF+ + E D +S+N+
Sbjct: 351 SLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNA 410

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY+++G    AVE+FG+MR     P  +T VS+LG      DL L K + G +VK+ 
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSG 470

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
             L+ Y GSALID+Y K   +  A+ VF  M N+D+V WNAMI   AQN    EA+ LF 
Sbjct: 471 TSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFA 530

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           R++ +G+ P++ T + +++  +++ ++  G+       + G   D             CG
Sbjct: 531 RLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCG 590

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            I++   +FE     + + WN+MIS  A +G A EAL +F  M  EG    PN VTF+ V
Sbjct: 591 FIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMM--EGAGVEPNYVTFVSV 648

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC HAGLVDEG   F+ M + + + P +EHY+ +V+L+ R+G L  A +F+ERMP + 
Sbjct: 649 LSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEP 708

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
              +  +LL AC    N ++ +   ++ L  + ++SG  V+ S I+A+  +W D+ K+R 
Sbjct: 709 VATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQ 768

Query: 540 LMREKGVSKTPGCSW 554
            M   GV K PG SW
Sbjct: 769 GMDCAGVVKEPGYSW 783



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 227/459 (49%), Gaps = 22/459 (4%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L S L+ C  ++     +Q+H       +    F+   +++L       + A  +F  + 
Sbjct: 140 LASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALP 199

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N   +  +I G + A Q    +L+L+ +M   G++PD F       +C+ L  +  G 
Sbjct: 200 ARNPVTWTAVITGYSQAGQA-GVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGR 258

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H   ++   + D  V ++LI +Y +C +L  AR++FD +  R+LVSW +MI+GY +  
Sbjct: 259 QIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNS 318

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EA+ +F ++ +  + PD     S+L SCG L  +  G+ V   V+K  ++ + Y+ +
Sbjct: 319 LDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKN 378

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALIDMY KC  L  AR VF+A+   D +++NAMI  YA+ G    A+ +F +M+Y  + P
Sbjct: 379 ALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKP 438

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVF 368
             +T + +L   +S   L+L K +     + G   D++ GS           +DDA  VF
Sbjct: 439 SLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVF 498

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             M   + V WNAMI  LA N R  EA+ LF R+   G    PN+ TF+ +++       
Sbjct: 499 SLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSG--LTPNEFTFVALVTVASTLAS 556

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           +  G++ F       G        + ++D+YA+ G + E
Sbjct: 557 IFHGQQ-FHAQIIKAGADSDPHISNALIDMYAKCGFIEE 594



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 225/463 (48%), Gaps = 28/463 (6%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G  P+ F       +CA   A   G  VH    K+GLD +  V  +L+ +YA+ G++D+A
Sbjct: 132 GEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAA 191

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
             VFD +  R+ V+W ++I+GYS+ G A  A+ELFGRM  +   PD   L S   +C  L
Sbjct: 192 MSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGL 251

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           G +  G+ + G+  +   + +  + +ALID+Y KC  L+ ARR+FD+M N+++V+W  MI
Sbjct: 252 GFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMI 311

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
             Y QN L  EA+ +F ++  AG  PD      +L++C S+ A+  G+ V  +  +  L 
Sbjct: 312 AGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLE 371

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D +           C  + +A  VFE +   + +S+NAMI   A  G    A+ +F +M
Sbjct: 372 SDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKM 431

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMV 456
                + +P+ +TF+ +L        V   R   +L     GLI KS         S ++
Sbjct: 432 RY--CSLKPSLLTFVSLLG-------VSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALI 482

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIESSNS 515
           D+Y++   + +A   V  + +  D ++  A++ G  Q ++  +  +   +L +   + N 
Sbjct: 483 DVYSKFSLVDDA-KLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNE 541

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             +V    + + L       +  A + + G    P  S   ID
Sbjct: 542 FTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALID 584



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 220/457 (48%), Gaps = 57/457 (12%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H+     GL  D  +++ L+  Y++ G+L  AR++FD +  R+LVSW S IS Y++ G 
Sbjct: 52  AHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGR 111

Query: 201 AKEAVELF------GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
             +A+ LF      G    +   P+E  L S L +C        G+ V G   K  +D N
Sbjct: 112 EDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDAN 171

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++G+AL+++Y K G +  A  VFDA+  ++ VTW A+IT Y+Q G +  A+ LF RM  
Sbjct: 172 VFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGL 231

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            GV PD+  L    SAC+ +G ++ G+ +  YA +     D             C  +  
Sbjct: 232 DGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLL 291

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A ++F+ M   N VSW  MI+    N    EA+ +F ++S+ G   +P+      +L++C
Sbjct: 292 ARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGW--QPDVFACTSILNSC 349

Query: 424 VHAGLVDEGRRLF------DLMSSSF------GLIPKSEH------------------YS 453
                + +GR++       DL S  +       +  K EH                  Y+
Sbjct: 350 GSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYN 409

Query: 454 CMVDLYARAGHLSEAWDFVERM---PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
            M++ YAR G L+ A +   +M     K   +   +LLG    + + ++S+++  L+++ 
Sbjct: 410 AMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKS 469

Query: 511 ESS---NSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            +S    +G+ +I   +++   + DD+  + +LM+ +
Sbjct: 470 GTSLDLYAGSALI--DVYSKFSLVDDAKLVFSLMQNR 504


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 311/585 (53%), Gaps = 58/585 (9%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFI------QKPNFLLIRIIDLKDFNYASLLFHQIS 79
           + +S+L  C +T   +Q+H+Q +   +      QK  F+          +YA  LF +I 
Sbjct: 36  RFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIP 95

Query: 80  RPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFISCA-NLLAL 135
            P+   +N MI+G    W K       ++LY  M + G+ PD+ T+PF+      +  AL
Sbjct: 96  EPDVVVWNNMIKG----WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGAL 151

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H  V K GL  + +V ++L+ MY+ CG +D AR VFD   + D+ SWN MISGY
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           ++M   +E++EL   M      P  +TL+ VL +C  + D  L K V  +V + K + + 
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA------------------------ 291
            + +AL++ Y  CG +  A R+F +M  +DV++W +                        
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 292 -------MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
                  MI  Y + G  NE++ +F  M+ AG+ PD+ T++ VL+ACA +G+L++G+W+ 
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            Y  +  +++D+            CG  + A KVF DM   ++ +W AM+  LA NG+  
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQ 451

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           EA+ +F +M  +  + +P+D+T++GVLSAC H+G+VD+ R+ F  M S   + P   HY 
Sbjct: 452 EAIKVFFQM--QDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVD+  RAG + EA++ + +MP   + IV GALLGA +   +  +++   + +LE+E  
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPD 569

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           N   Y +   I+A  K W D  ++R  + +  + KTPG S I ++
Sbjct: 570 NGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 174/495 (35%), Positives = 280/495 (56%), Gaps = 16/495 (3%)

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           QI   + Y +N +IRG          ++ +Y  +++ GLK D +T  FV  +C     + 
Sbjct: 38  QIDGLDTYTWNTIIRGYLEG-NDPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVIL 96

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  +FK+G + +  +  +L+ +Y    +    +++FDE+ +RDLV WN++I+ Y+
Sbjct: 97  EGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYA 156

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
                 +  E+   M      P+ +T VS+L  C  L  L  GK V G+V KN ++ + +
Sbjct: 157 HGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVF 216

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +ALI +Y KCG++  A +VF  M  ++VV+W ++I  Y+ N   NEA+  F +M+   
Sbjct: 217 VHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAEN 276

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------------IFCGSIDDA 364
           + PD+IT++GV+  C+ + + +LG+W+ +Y  + GL  +              CG+I+ A
Sbjct: 277 IRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRA 336

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F+ M     VSW  MI  LA +G    AL+ F +M +EG   +P+ + F+ +LSAC 
Sbjct: 337 CQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREG--FKPDSLVFLSLLSACS 394

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLVDEG R F  M + + + P  EHY CMVD+  RAG + EA+ FV+ MP K D IV 
Sbjct: 395 HAGLVDEGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVW 454

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
             LLGAC  Q N  ++ +VM  L E+    S +YV+ S +FA+   WD+  ++R  M ++
Sbjct: 455 RTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVLLSNLFASNAEWDNVGEVRKEMGDR 514

Query: 545 GVSKT-PGCSWIGID 558
           GV+K  PGCS+I  D
Sbjct: 515 GVTKQDPGCSFIEAD 529



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 172/323 (53%), Gaps = 15/323 (4%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G    AR++ D+I   D  +WN++I GY +    +EA+ ++  +R++    D  TLV V+
Sbjct: 27  GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVI 86

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CG    ++ G+ + G + K   +    + +AL+++YG        +++FD M  +D+V
Sbjct: 87  KACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLV 146

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
            WNA+I AYA      +   +   M  + V P+ +T + +LS C+S+ AL  GK V  Y 
Sbjct: 147 MWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYV 206

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           ++  +  D+F           CGSI DA++VF+ MP+ N VSW ++I+  + N   +EAL
Sbjct: 207 TKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEAL 266

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-CM 455
             F++M  E    RP+++T +GV+  C      + G  +   +    GL+ +S   +  +
Sbjct: 267 GFFKQMEAEN--IRPDEITVLGVVCMCSKLRSFELGEWISQYV-VKIGLLKESPAIANAL 323

Query: 456 VDLYARAGHLSEAWDFVERMPEK 478
           +D++A+ G+++ A    + M EK
Sbjct: 324 MDMHAKCGNINRACQIFDGMEEK 346


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 311/585 (53%), Gaps = 58/585 (9%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFI------QKPNFLLIRIIDLKDFNYASLLFHQIS 79
           + +S+L  C +T   +Q+H+Q +   +      QK  F+          +YA  LF +I 
Sbjct: 36  RFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIP 95

Query: 80  RPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFISCA-NLLAL 135
            P+   +N MI+G    W K       ++LY  M + G+ PD+ T+PF+      +  AL
Sbjct: 96  EPDVVVWNNMIKG----WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGAL 151

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H  V K GL  + +V ++L+ MY+ CG +D AR VFD   + D+ SWN MISGY
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           ++M   +E++EL   M      P  +TL+ VL +C  + D  L K V  +V + K + + 
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA------------------------ 291
            + +AL++ Y  CG +  A R+F +M  +DV++W +                        
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 292 -------MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
                  MI  Y + G  NE++ +F  M+ AG+ PD+ T++ VL+ACA +G+L++G+W+ 
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            Y  +  +++D+            CG  + A KVF DM   ++ +W AM+  LA NG+  
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQ 451

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           EA+ +F +M  +  + +P+D+T++GVLSAC H+G+VD+ R+ F  M S   + P   HY 
Sbjct: 452 EAIKVFFQM--QDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVD+  RAG + EA++ + +MP   + IV GALLGA +   +  +++   + +LE+E  
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPD 569

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           N   Y +   I+A  K W D  ++R  + +  + KTPG S I ++
Sbjct: 570 NGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 282/524 (53%), Gaps = 16/524 (3%)

Query: 48  LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY 107
           L+N +   + LL   + + +   +  +F ++   N   +  +I GL  A   YS +   Y
Sbjct: 147 LVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRA--GYSEAGLAY 204

Query: 108 YQ-MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR 166
           +  M R  ++ D++ Y     + A+  ALNHG S+H+   K G DE+  V++SL TMY +
Sbjct: 205 FSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNK 264

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
           CGKLD     F ++R  D+VSW ++++ Y +MG     ++ F RMR    +P+E T  +V
Sbjct: 265 CGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAV 324

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           +  C +   L  G+ +   V+         + ++++ +Y KCG L    +VF +M  +D+
Sbjct: 325 ISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDI 384

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           +TW+ +I AY+Q G   EA    +RM+  G  P++  L  VLS C S+  L+ GK +  +
Sbjct: 385 ITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAH 444

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
               GL                CGSI +A K+F D    + +SW AMIS  A +G + EA
Sbjct: 445 VLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEA 504

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           + LFE + K G   RP+ VTFIGVL+AC HAG+VD G   F+ MS  + + P  EHY CM
Sbjct: 505 IELFENIQKVG--LRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCM 562

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           +DL  RAG L +A   +  MP + D++V   LL AC+   + D  QR    +L+++ + +
Sbjct: 563 IDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCA 622

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           G ++  + IFA    W ++A +R LM+ KGV K PG S + + D
Sbjct: 623 GTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKD 666



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 203/423 (47%), Gaps = 19/423 (4%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLK 116
           +L++   LKD   A  LF Q+ + +E ++  +I G   +    S +L+L+ +M+ +  L+
Sbjct: 58  ILVKTNHLKD---ARDLFDQLPQRDEVSWTNIISGYVNS-SDSSEALRLFSKMRLQSELR 113

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
            D F       +C   L   +G ++H    K GL     V  +L+ MY + G++  + KV
Sbjct: 114 IDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKV 173

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
           FDE+  R+ V+W ++I+G  + GY++  +  F  M   +   D       L +  D G L
Sbjct: 174 FDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGAL 233

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
             G+ +    +K   D N ++ ++L  MY KCG L      F  M   DVV+W  ++TAY
Sbjct: 234 NHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAY 293

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            Q G  +  +  F RM+ + V P++ T   V+S CA+   L  G+ +  +    G  + +
Sbjct: 294 IQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNAL 353

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                       CG +    KVF  M   + ++W+ +I+A +  G   EA     RM  E
Sbjct: 354 SVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSE 413

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   +PN+     VLS C    ++++G++L   +  S GL   S   S ++ +YA+ G +
Sbjct: 414 G--PKPNEFALASVLSVCGSMAILEQGKQLHAHV-LSVGLEQTSMVCSALIIMYAKCGSI 470

Query: 466 SEA 468
           +EA
Sbjct: 471 AEA 473



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 189/432 (43%), Gaps = 63/432 (14%)

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR-EEEFLPD 219
           + +  +   L  AR +FD++ +RD VSW ++ISGY     + EA+ LF +MR + E   D
Sbjct: 56  LKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID 115

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
              L   L +CG   + + G  + GF VK  +  + ++GSAL+DMY K G +  + +VFD
Sbjct: 116 PFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFD 175

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  ++ VTW A+IT   + G S   +  F+ M  + V  D       L A A  GAL+ 
Sbjct: 176 EMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNH 235

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G+ +     ++G   + F           CG +D  L  F  M   + VSW  +++A   
Sbjct: 236 GRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQ 295

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL------------F 436
            G+    L  F+RM        PN+ TF  V+S C +   +  G +L             
Sbjct: 296 MGKEDCGLQAFKRM--RASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNAL 353

Query: 437 DLMSSSFGLIPKSEH------------------YSCMVDLYARAGHLSEAWDFVERMPE- 477
            + +S   L  K                     +S ++  Y++ G+  EA++++ RM   
Sbjct: 354 SVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSE 413

Query: 478 --KVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIES----------SNSGNYVIS 521
             K +E  L ++L  C      ++   +   V+ + LE  S          +  G+   +
Sbjct: 414 GPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEA 473

Query: 522 SKIFANLKMWDD 533
           SKIF  +  W D
Sbjct: 474 SKIF--MDSWKD 483


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 282/524 (53%), Gaps = 16/524 (3%)

Query: 48  LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY 107
           L+N +   + LL   + + +   +  +F ++   N   +  +I GL  A   YS +   Y
Sbjct: 147 LVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRA--GYSEAGLAY 204

Query: 108 YQ-MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR 166
           +  M R  ++ D++ Y     + A+  ALNHG S+H+   K G DE+  V++SL TMY +
Sbjct: 205 FSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNK 264

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
           CGKLD     F ++R  D+VSW ++++ Y +MG     ++ F RMR    +P+E T  +V
Sbjct: 265 CGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAV 324

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           +  C +   L  G+ +   V+         + ++++ +Y KCG L    +VF +M  +D+
Sbjct: 325 ISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDI 384

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           +TW+ +I AY+Q G   EA    +RM+  G  P++  L  VLS C S+  L+ GK +  +
Sbjct: 385 ITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAH 444

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
               GL                CGSI +A K+F D    + +SW AMIS  A +G + EA
Sbjct: 445 VLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEA 504

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           + LFE + K G   RP+ VTFIGVL+AC HAG+VD G   F+ MS  + + P  EHY CM
Sbjct: 505 IELFENIQKVG--LRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCM 562

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           +DL  RAG L +A   +  MP + D++V   LL AC+   + D  QR    +L+++ + +
Sbjct: 563 IDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCA 622

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           G ++  + IFA    W ++A +R LM+ KGV K PG S + + D
Sbjct: 623 GTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKD 666



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 203/423 (47%), Gaps = 19/423 (4%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLK 116
           +L++   LKD   A  LF Q+ + +E ++  +I G   +    S +L+L+ +M+ +  L+
Sbjct: 58  ILVKTNHLKD---ARDLFDQLPQRDEVSWTNIISGYVNS-SDSSEALRLFSKMRLQSELR 113

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
            D F       +C   L   +G ++H    K GL     V  +L+ MY + G++  + KV
Sbjct: 114 IDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKV 173

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
           FDE+  R+ V+W ++I+G  + GY++  +  F  M   +   D       L +  D G L
Sbjct: 174 FDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGAL 233

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
             G+ +    +K   D N ++ ++L  MY KCG L      F  M   DVV+W  ++TAY
Sbjct: 234 NHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAY 293

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            Q G  +  +  F RM+ + V P++ T   V+S CA+   L  G+ +  +    G  + +
Sbjct: 294 IQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNAL 353

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                       CG +    KVF  M   + ++W+ +I+A +  G   EA     RM  E
Sbjct: 354 SVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSE 413

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   +PN+     VLS C    ++++G++L   +  S GL   S   S ++ +YA+ G +
Sbjct: 414 G--PKPNEFALASVLSVCGSMAILEQGKQLHAHV-LSVGLEQTSMVCSALIIMYAKCGSI 470

Query: 466 SEA 468
           +EA
Sbjct: 471 AEA 473



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 189/432 (43%), Gaps = 63/432 (14%)

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR-EEEFLPD 219
           + +  +   L  AR +FD++ +RD VSW ++ISGY     + EA+ LF +MR + E   D
Sbjct: 56  LKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID 115

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
              L   L +CG   + + G  + GF VK  +  + ++GSAL+DMY K G +  + +VFD
Sbjct: 116 PFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFD 175

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  ++ VTW A+IT   + G S   +  F+ M  + V  D       L A A  GAL+ 
Sbjct: 176 EMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNH 235

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G+ +     ++G   + F           CG +D  L  F  M   + VSW  +++A   
Sbjct: 236 GRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQ 295

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL------------F 436
            G+    L  F+RM        PN+ TF  V+S C +   +  G +L             
Sbjct: 296 MGKEDCGLQAFKRM--RASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNAL 353

Query: 437 DLMSSSFGLIPKSEH------------------YSCMVDLYARAGHLSEAWDFVERMPE- 477
            + +S   L  K                     +S ++  Y++ G+  EA++++ RM   
Sbjct: 354 SVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSE 413

Query: 478 --KVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIES----------SNSGNYVIS 521
             K +E  L ++L  C      ++   +   V+ + LE  S          +  G+   +
Sbjct: 414 GPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEA 473

Query: 522 SKIFANLKMWDD 533
           SKIF  +  W D
Sbjct: 474 SKIF--MDSWKD 483


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 291/549 (53%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLK----DFNYASLLFHQISRP 81
           SLL  C S       +Q+H+ ++   +     +   ++DL     D   A   F      
Sbjct: 319 SLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE 378

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +NVM+          S S  ++ QM+  GL P+ +TYP +  +C +L AL+ G  +
Sbjct: 379 NVVLWNVMLVAYGQL-GNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQI 437

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V K G   + +V   LI MYA+ G+LD+AR +   +RE D+VSW +MI+GY++    
Sbjct: 438 HTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLF 497

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA++LF  M  +    D I   S + +C  +  L  G+ +      +    +  +G+AL
Sbjct: 498 AEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNAL 557

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + +Y +CG    A   F+ +  KD ++WNA+I+ +AQ+G   EA+ +F++M  AGV  + 
Sbjct: 558 VSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANL 617

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T    +SA A+   +  GK +     + G   +             CGSI+DA + F +
Sbjct: 618 FTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFE 677

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  N VSWNAMI+  + +G   EA+ LFE M + G    PN VTF+GVLSAC H GLV+
Sbjct: 678 MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLG--LMPNHVTFVGVLSACSHVGLVN 735

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F  MS   GL+PK EHY C+VDL  RA  L  A +F+E MP + D ++   LL A
Sbjct: 736 EGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSA 795

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C   KN ++ +   + LLE+E  +S  YV+ S ++A    WD   + R +M+++GV K P
Sbjct: 796 CTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEP 855

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 856 GRSWIEVKN 864



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/542 (26%), Positives = 270/542 (49%), Gaps = 35/542 (6%)

Query: 29  SLLKKCPSTK----TVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISR 80
           S+L+ C   K      +QIH +++ +       +   +IDL   N     A L+F ++  
Sbjct: 116 SVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFL 175

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +  ++  MI GL+   ++   ++ L+ QM +  + P  + +  V  +C  +     G  
Sbjct: 176 KDSVSWVAMISGLSQNGRE-DEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQ 234

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  + K GL  +  V ++L+T+Y+R G L +A ++F ++  RD +S+NS+ISG ++ G+
Sbjct: 235 LHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGF 294

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           +  A++LF +M+ +   PD +T+ S+L +C  +G    GK +  +V+K  M  +  +  +
Sbjct: 295 SDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGS 354

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+D+Y KC  +  A   F     ++VV WN M+ AY Q G  +E+  +F +M+  G+ P+
Sbjct: 355 LLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPN 414

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFE 369
           + T   +L  C S+GALDLG+ +     + G + +++            G +D A  + +
Sbjct: 415 QYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQ 474

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +   + VSW AMI+    +    EAL LF+ M  +G   R +++ F   +SAC     +
Sbjct: 475 RLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQG--IRSDNIGFSSAISACAGIQAL 532

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL- 488
           ++G+++    S   G        + +V LYAR G   +A+   E++  K D I   AL+ 
Sbjct: 533 NQGQQI-HAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNALIS 590

Query: 489 -----GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
                G C++     V  ++ Q  +E      G+ V ++   AN+K      ++ A+M +
Sbjct: 591 GFAQSGHCEEA--LQVFSQMNQAGVEANLFTFGSAVSATANTANIK---QGKQIHAMMIK 645

Query: 544 KG 545
            G
Sbjct: 646 TG 647



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 211/439 (48%), Gaps = 47/439 (10%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+  G++ +  TY ++F  C N  +L     +H+ +FK G D +D +   LI +Y   G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           +D+A K+FD+I   ++  WN +ISG      A + + LF  M  E   PDE T  SVL +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 230 C-GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           C G      + + +   ++ +    +  + + LID+Y K G +  A+ VF+ +  KD V+
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           W AMI+  +QNG  +EAI+LF +M  + V P       VLSAC  I    LG+ +  +  
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 349 QRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + GL  + F            G++  A ++F  M   + +S+N++IS LA  G +  AL 
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR-------------------LFDL 438
           LFE+M  +    +P+ VT   +LSAC   G   +G++                   L DL
Sbjct: 301 LFEKMQLD--CMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 439 MSSSFGLIPKSEHY-----------SCMVDLYARAGHLSEA-WDFVERMPEKV--DEIVL 484
               F +    E++           + M+  Y + G+LSE+ W F++   E +  ++   
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 485 GALLGACQKQKNTDVSQRV 503
            ++L  C      D+ +++
Sbjct: 419 PSILRTCTSLGALDLGEQI 437


>gi|293333548|ref|NP_001170485.1| uncharacterized protein LOC100384484 [Zea mays]
 gi|238005588|gb|ACR33829.1| unknown [Zea mays]
 gi|413920755|gb|AFW60687.1| hypothetical protein ZEAMMB73_143396 [Zea mays]
          Length = 569

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 202/539 (37%), Positives = 292/539 (54%), Gaps = 23/539 (4%)

Query: 36  STKTVQQIHTQMLINFIQ-KPNFL--LIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRG 92
           S + +  IH + ++  +   P F   L+  +      YA  +F      + Y +N ++R 
Sbjct: 33  SLRALLPIHARAIVLGVSANPAFATSLLAGVAPASLAYARRVFDATPVRDAYMWNTLLRA 92

Query: 93  LTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
            + +  + SH   +L LY +M+  G+ PD++TYP V  +CA    L  G +VH  V +  
Sbjct: 93  HSHS--QLSHAADTLALYKRMRAAGVAPDHYTYPIVLPACAAARELWLGRAVHGDVVRFA 150

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVEL 207
           L  D  V  +LITMY + G++  A  VF E     R +VSW SM++GY +  Y  EAV L
Sbjct: 151 LAGDGFVHSALITMYFQEGEVADAELVFAESHGSSRTVVSWTSMVAGYVQNYYFGEAVAL 210

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           FG M  E  LP+EITL+S L        L  G+ V GFV++   D N  + +ALI MYGK
Sbjct: 211 FGTMIAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRLGFDANIPLANALIAMYGK 270

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           CG++  A+ +F+ M  + + +WN M+  Y Q+    EAI  F RM    V  D +TL+ V
Sbjct: 271 CGSIPMAQTLFEGMPARSLASWNTMVAMYEQHADVVEAIKFFRRMLTEKVGFDCVTLVSV 330

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE 376
           LSACA  GAL  GKWV + A   GL  D             CG I  A  VF+ + + + 
Sbjct: 331 LSACARSGALQTGKWVHELARNHGLDTDARIGNVLVDMYAKCGEIASARNVFDCLRMRSV 390

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           VSW+AMISA A +G + EAL LF  M  EG   RPN  TF  VL AC H+GLV+EG + F
Sbjct: 391 VSWSAMISAYANHGASEEALKLFSLMKNEG--VRPNSFTFTAVLVACGHSGLVEEGLKHF 448

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
           + + S + + P  EHY+CMVD+  RAG L EA++ +  M    D+ V GA L  C+   N
Sbjct: 449 NSILSDYQMSPTLEHYACMVDMLGRAGRLIEAYEIIRGMSLCPDKCVWGAFLAGCKLHGN 508

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            ++++ V + L +  S++   YV+ S ++    M  D+ +MR  M+E  ++KT G S I
Sbjct: 509 LELAEFVARDLFQSGSNDVTFYVLMSNMYFEAGMLKDAERMRWAMKEMELNKTAGRSAI 567


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/555 (34%), Positives = 294/555 (52%), Gaps = 61/555 (10%)

Query: 23  LREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
           ++   L LL+ C  +K++   ++IH   L N     + +L ++  L         A  LF
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 76  HQISRPNEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            +I  P+   +N +IR    AW   +  ++ LY+ M  LG++P+ +TYPFV  +C+ LLA
Sbjct: 67  DEIPNPSVILWNQIIRAY--AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  GV +HS     GL+ D  V  +L+  YA+CG L  A+++F  +  RD+V+WN+MI+G
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            S  G   +AV+L  +M+EE   P+  T+V VL +C                        
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC------------------------ 220

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
                       +C  L+ AR++FD M  ++ V+W+AMI  Y  +    EA+ +F  M+ 
Sbjct: 221 ------------QC--LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQL 266

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           +G++PD  T++GVL AC+ + AL  G     Y   RG   D             CG I  
Sbjct: 267 SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 326

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A +VF  M   + VSWNAMI     +G   EAL LF  +   G   +P+D+TFI +LS+C
Sbjct: 327 AREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG--LKPDDITFICLLSSC 384

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H+GLV EGR  FD MS  F ++P+ EH  CMVD+  RAG + EA  F+  MP + D  +
Sbjct: 385 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 444

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             ALL AC+  KN ++ + V + +  +   ++GN+V+ S I++    WDD+A +R   ++
Sbjct: 445 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 504

Query: 544 KGVSKTPGCSWIGID 558
            G+ K PGCSWI I+
Sbjct: 505 WGLKKIPGCSWIEIN 519


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/450 (38%), Positives = 265/450 (58%), Gaps = 13/450 (2%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   C N  A+  G  VH+ + K       ++S  LI +Y +C  L  AR VFDE+R
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER++VSW +MISGYS+ G+A EA+ LF +M   +  P+E T  +VL SC       LG+ 
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +   + K   + + ++GS+L+DMY K G +  AR VF+ +  +DVV+  A+I+ YAQ GL
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
             EA+ LF R++  G++ + +T   +L+A + + ALD GK V  +  +  L         
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS 252

Query: 355 --DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
             D++  CG+++ A K+F +MPV   +SWNAM+   + +G+  E + LF+ M +E    +
Sbjct: 253 LIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREE-NKVK 311

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYSCMVDLYARAGHLSEAW 469
           P+ VTF+ VLS C H GL D+G  +FD M +    I    EHY C++DL  RAG + EA+
Sbjct: 312 PDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAF 371

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
           + +++MP +    + G+LLGAC+   NT++ + V   LLEIE  N+GNYVI S ++A+  
Sbjct: 372 ELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAG 431

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            W+D   +R LM EK V K PG SWI +D 
Sbjct: 432 RWEDVRNVRELMMEKAVIKEPGRSWIELDQ 461



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 230/461 (49%), Gaps = 42/461 (9%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LL +C + + V   Q++H  M+      P +L  R+I L    +    A  +F ++   N
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  MI G +      S +L L+ QM R   +P+ FT+  V  SC        G  +H
Sbjct: 76  VVSWTAMISGYSQRGFA-SEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S +FK   +    V  SL+ MYA+ G++  AR VF+ + ERD+VS  ++ISGY+++G  +
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDE 194

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ELF R++ E    + +T  S+L +   L  L  GK V   V++ ++     + ++LI
Sbjct: 195 EALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLI 254

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDK 321
           DMY KCG L  AR++F+ M  + V++WNAM+  Y+++G   E + LF  M+    V PD 
Sbjct: 255 DMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDS 314

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNA 381
           +T + VLS C+  G  D           +GL  ++F    D+ +   +++    E  +  
Sbjct: 315 VTFLAVLSGCSHGGLED-----------KGL--EMF----DEMMNGGDEIEAGIE-HYGC 356

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GRRLFD 437
           +I  L   GR  EA  L ++M  E     P    +  +L AC VH+   + E  G RL +
Sbjct: 357 VIDLLGRAGRVEEAFELIKKMPFE-----PTAAIWGSLLGACRVHSNTNIGEFVGCRLLE 411

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +   + G      +Y  + +LYA AG   +  +  E M EK
Sbjct: 412 IEPENAG------NYVILSNLYASAGRWEDVRNVRELMMEK 446


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/497 (34%), Positives = 276/497 (55%), Gaps = 26/497 (5%)

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           H+I   N +AFN +I G  T         + Y +M+  G+ PD FT+P    +C ++L +
Sbjct: 100 HEI---NVFAFNAIISGFITNGFP-EEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI 155

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
                +H  +FK GL+ D  +  +L+  Y + G ++ A+  F+E+  RD+V WN+M++GY
Sbjct: 156 K---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           +++G  +  +E F RM +E  +P   T+   L     +GDL  G+ + GF +K   D   
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            + ++LIDMYGKC  +  A  +F+ M  KD+ +WN++++ + Q G  +  + L +RM  A
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------------IFC 358
           G+ PD +T+  VL AC+ + AL  G+ +  Y    GL  D                   C
Sbjct: 333 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 392

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS+ DA  VFE M   +  SWN MI     +G  +EAL +F RM +     +P++VTF+G
Sbjct: 393 GSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEV--QLKPDEVTFVG 450

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSAC HAG V +GR     M S + + P  EHY+C++D+  RAG L EA++    MP +
Sbjct: 451 VLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 510

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + +V  ALL AC+  K+  +++   Q + E+E  + G+YV+ S ++  +  +++  ++R
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVR 570

Query: 539 ALMREKGVSKTPGCSWI 555
             MR++ V KTPGCSWI
Sbjct: 571 HTMRQQNVRKTPGCSWI 587



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 160/318 (50%), Gaps = 23/318 (7%)

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D   E ++ ++N++ISG+   G+ +E  E + +MR E  +PD+ T    + +C D+ ++ 
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI- 155

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
             K + G + K  ++L+ ++GSAL++ Y K G +  A+  F+ +  +DVV WNAM+  YA
Sbjct: 156 --KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 213

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           Q G     +  F RM    V P + T+ G LS  A +G L+ G+ +  +A + G    + 
Sbjct: 214 QIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVA 273

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      C  I+DAL++FE M   +  SWN+++S     G     L L +RM   G
Sbjct: 274 VSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRML--G 331

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMVDLYA 460
              +P+ VT   VL AC H   +  GR +   M  S GL    +        + ++D+YA
Sbjct: 332 AGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVS-GLGKDGKDIDDVLLKNAVIDMYA 390

Query: 461 RAGHLSEAWDFVERMPEK 478
           + G + +A    ERM  K
Sbjct: 391 KCGSMRDAHLVFERMSNK 408


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/551 (34%), Positives = 299/551 (54%), Gaps = 21/551 (3%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           + SLL  C S   +   +Q+H+ +L   +     +   ++DL         A  +F    
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD 306

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           R N   +N+M+          + S  L+ QM   G++P+ FTYP +  +C     +N G 
Sbjct: 307 RTNVVLWNLMLVAYGQI-SDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGE 365

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H    K G + D +VS  LI MY++ G LD AR++ + +  +D+VSW SMI+GY +  
Sbjct: 366 QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHE 425

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + KEA+E F  M+     PD I L S + +C  +  +  G+ +   V  +    +  + +
Sbjct: 426 FCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWN 485

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+++Y +CG    A  +F+A+ +KD +TWN M++ +AQ+GL  EA+ +F +M  AGV  
Sbjct: 486 ALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKY 545

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +  T +  +SA A++  +  GK +     + G   +             CGSI+DA   F
Sbjct: 546 NVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQF 605

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            +M   N VSWN +I++ + +G   EAL LF++M +EG   +PNDVTFIGVL+AC H GL
Sbjct: 606 FEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEG--LKPNDVTFIGVLAACSHVGL 663

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+EG   F  MSS  G+ P+ +HY+C+VD+  RAG L  A  FVE MP   + +V   LL
Sbjct: 664 VEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLL 723

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+  KN ++ +   + LLE+E  +S +YV+ S  +A    W     +R +M+++GV K
Sbjct: 724 SACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRK 783

Query: 549 TPGCSWIGIDD 559
            PG SWI + +
Sbjct: 784 EPGRSWIEVKN 794



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 209/419 (49%), Gaps = 15/419 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F Q+S  +  ++  M+ G          ++ LY+QM   G+ P  +    V  +C 
Sbjct: 96  ARRVFEQLSARDNVSWVAMLSGYARNGLG-EEAVGLYHQMHCSGVVPTPYVLSSVLSACT 154

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                  G  VH+ V+K G   +  V ++LI +Y R G L  A +VF E+   D V++N+
Sbjct: 155 KAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNT 214

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +IS +++ G  + A+E+F  MR   + PD +T+ S+L +C  +GDL  GK +  +++K  
Sbjct: 215 LISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAG 274

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           M  ++ +  +L+D+Y KCG +V A  +F +    +VV WN M+ AY Q     ++  LF 
Sbjct: 275 MSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFC 334

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------G 359
           +M  AGV P++ T   +L  C   G ++LG+ +   + + G   D++            G
Sbjct: 335 QMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYG 394

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D A ++ E +   + VSW +MI+    +    EAL  F+ M   G    P+++     
Sbjct: 395 WLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG--IWPDNIGLASA 452

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +SAC     + +G+++   +  S G       ++ +V+LYAR G   EA+   E +  K
Sbjct: 453 ISACAGIKAMRQGQQIHSRVYVS-GYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK 510



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 182/349 (52%), Gaps = 14/349 (4%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+     GL ED    + LI +YA+ G +  AR+VF+++  RD VSW +M+SGY++ G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +EAV L+ +M     +P    L SVL +C        G+ V   V K        +G+A
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LI +Y + G+L  A RVF  M   D VT+N +I+ +AQ G    A+ +F  M+ +G  PD
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFE 369
            +T+  +L+ACASIG L+ GK +  Y  + G+  D           + CG I +AL++F+
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
               TN V WN M+ A        ++  LF +M   G   RPN+ T+  +L  C +AG +
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAG--VRPNEFTYPCLLRTCTYAGEI 361

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           + G ++  L+S   G          ++D+Y++ G L +A   +E +  K
Sbjct: 362 NLGEQI-HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK 409


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 298/554 (53%), Gaps = 21/554 (3%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           + L    + L  KC    T      Q     +   N L+         + A  LF QI +
Sbjct: 43  TYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQ 102

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+  +FN +I          S +L L+ +M+ +GL  D FT+  V  +C N + L     
Sbjct: 103 PDLVSFNTLINAYADRGDTLS-ALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIR--Q 159

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKM 198
           +HS  F  G D    V +SL+T Y++ G L+ A  VF+ + E  RD VSWNSMI  Y + 
Sbjct: 160 LHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQH 219

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               +A+ L+  M    F  D  TL SVL +   + DL  G       +K   + N ++G
Sbjct: 220 KRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVG 279

Query: 259 SALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEAIMLFNRMKYAG 316
           S LIDMY KCGA +  +R+VF+ +   D+V WN MI+ Y+QN  LS EA+  F +M+ AG
Sbjct: 280 SGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAG 339

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------------CGSIDDA 364
             PD  + +  +SAC+++ +   GK     A +  +  +              CG++ DA
Sbjct: 340 YWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDA 399

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            K+F+ MP  N V+ N++I+  A +G   E+L LFE+M     +  P  +T + +LSAC 
Sbjct: 400 RKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQML--AASIAPTSITLVSILSACA 457

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H G V+EG++ F++M   FG+ P++EHYSCM+DL  RAG LSEA   ++ MP        
Sbjct: 458 HTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAW 517

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            ALLGAC+K  N +++++     L++E +N+  Y++ + +++  + W+++A++R LMR++
Sbjct: 518 AALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDR 577

Query: 545 GVSKTPGCSWIGID 558
           G+ K PGCSWI ++
Sbjct: 578 GIRKKPGCSWIELN 591



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 190/418 (45%), Gaps = 54/418 (12%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G S+H+   K  +    ++S+  I +Y++C  L +A   F++  E ++ S+N++I+ Y+K
Sbjct: 27  GKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAK 86

Query: 198 -------------------------------MGYAKEAVELFGRMREEEFLPDEITLVSV 226
                                           G    A+ LFG MRE   + D  T   V
Sbjct: 87  ESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGV 146

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K 284
           + +C +   L+  + +      +  D    + ++L+  Y K G L  A  VF+ M    +
Sbjct: 147 ITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVR 204

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D V+WN+MI AY Q+    +A+ L+  M + G   D  TL  VL+  + +  L  G    
Sbjct: 205 DEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFH 264

Query: 345 KYASQRGL---RH------DIF--CGS-IDDALKVFEDMPVTNEVSWNAMISALAFNGR- 391
             A + G    RH      D++  CG+ + ++ KVFE++  ++ V WN MIS  + N   
Sbjct: 265 AKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKEL 324

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           + EAL  F +M + G    P+D +F+  +SAC +     +G++   L   S   IP ++ 
Sbjct: 325 SVEALECFRQMQRAG--YWPDDCSFVCAISACSNLSSPSQGKQFHALAMKS--EIPSNQI 380

Query: 452 Y--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
              + +V +Y++ G+L +A    +RMP+     +   + G  Q    T+      Q+L
Sbjct: 381 SVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQML 438



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 42/223 (18%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L SC    DL+ GK +    +K+ +  + Y+ +  I +Y KC  L  A   F+     +
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 286 VVTWNAMITAYAQNGLSN-------------------------------EAIMLFNRMKY 314
           V ++NA+I AYA+  L +                                A+ LF  M+ 
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 315 AGVNPDKITLIGVLSACAS-------IGALDLGKWVDKYASQRG--LRHDIFCGSIDDAL 365
            G+  D  T  GV++AC +       + +L      D Y S +   L +    G +++A 
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAE 193

Query: 366 KVFEDM--PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
            VF  M   V +EVSWN+MI A   + R  +AL L+  M   G
Sbjct: 194 MVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRG 236


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 313/595 (52%), Gaps = 58/595 (9%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF 68
           +++L  T L +PS ++ K              +Q+H Q+L   +  P+ L   +    + 
Sbjct: 4   TQNLCKTLLQNPSSVKSK-----------SQAKQLHAQILRTSLPSPSLLSTILSIYSNL 52

Query: 69  NY---ASLLFHQI-SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           N    + L+F+ + S P   A+  +IR  T+    + HSL  + QM   G  PD+  +P 
Sbjct: 53  NLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSH-GLFLHSLSFFIQMLASGKYPDHNVFPS 111

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD------------- 171
           V  SC  +  L  G SVH  + ++G+  D +  ++L+ MY++   L+             
Sbjct: 112 VLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGK 171

Query: 172 ----------------SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
                           S RKVF+ + +RD+VSWN++ISG ++ G  ++A+ +   M   +
Sbjct: 172 TSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNAD 231

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  TL SVL    +  +L+ GK + G+ ++N  D + ++GS+LIDMY KC  +  + 
Sbjct: 232 LRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSC 291

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           RVF  +   D ++WN++I    QNG+ +E +  F +M  A + P+ ++   ++ ACA + 
Sbjct: 292 RVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 351

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
            L LGK +  Y  +     ++F           CG+I  A  +F+ M + + VSW AMI 
Sbjct: 352 TLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIM 411

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
             A +G A++A+ LF+RM  EG   +PN V F+ VL+AC HAGLVDE  + F+ M+  + 
Sbjct: 412 GYALHGHAYDAISLFKRMEVEG--VKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR 469

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           +IP  EHY+ + DL  R G L EA++F+  M  +    V   LL AC+  KN +++++V 
Sbjct: 470 IIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVS 529

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + L  ++  N G YV+ S I++    W D+ K+R  MR+KG+ K P CSWI I +
Sbjct: 530 KKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKN 584


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/505 (35%), Positives = 276/505 (54%), Gaps = 55/505 (10%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
             +F++A  +F  I  PN + +N++I+G      K   ++  Y +M  +  +P+ FTYP 
Sbjct: 80  FSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN-NKLFKAIYFYGRMV-IDARPNKFTYPT 137

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +F +C+   A+  G  +H  V K G+  D H+  + I MYA  G+L+ ARK+F    E D
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESD 196

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +V WN+MI GY K G  + A  LF +M  +                       +G W   
Sbjct: 197 VVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN----------------------IGSW--- 231

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
                         + +I+   K G L  AR++FD M  +D ++W++M+  Y   G   E
Sbjct: 232 --------------NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKE 277

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ +F +M+     P +  L  VL+AC++IGA+D G+WV  Y  +  ++ D         
Sbjct: 278 ALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLD 337

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG +D   +VFE+M      +WNAMI  LA +GRA +AL LF ++ +  G  +PN 
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQE--GRMKPNG 395

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +T +GVL+AC HAG VD+G R+F  M   +G+ P+ EHY CMVDL  R+G  SEA D + 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP K +  V GALLGAC+   N D+++RV ++LLE+E  NSG YV+ S I+A +  +DD
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 534 SAKMRALMREKGVSKTPGCSWIGID 558
            +K+R LM+++G+   PG S + ++
Sbjct: 516 VSKIRKLMKDRGIKTVPGVSIVDLN 540



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 45/372 (12%)

Query: 33  KCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRG 92
           KC   +  + +  QM +  I   N ++  +    +   A  LF ++S  +E +++ M+ G
Sbjct: 209 KCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDG 268

Query: 93  LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
             +A  +Y  +L+++ QM+R   +P  F    V  +C+N+ A++ G  VH+ + +  +  
Sbjct: 269 YISA-GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKL 327

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           D  +  +L+ MYA+CG+LD   +VF+E++ER++ +WN+MI G +  G A++A+ELF +++
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
           E    P+ ITLV VL +C             GFV     D    +   + + YG      
Sbjct: 388 EGRMKPNGITLVGVLTACAH----------AGFV-----DKGLRIFQTMREFYG------ 426

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
                    V+ ++  +  M+    ++GL +EA  L N M    + P+      +L AC 
Sbjct: 427 ---------VDPELEHYGCMVDLLGRSGLFSEAEDLINSMP---MKPNAAVWGALLGACR 474

Query: 333 SIGALDLGKWVDKY--------ASQRGLRHDIFC--GSIDDALKVFEDMPVTNEVSWNAM 382
             G  DL + V K         + +  L  +I+   G  DD  K+ + M     +     
Sbjct: 475 IHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK-DRGIKTVPG 533

Query: 383 ISALAFNGRAHE 394
           +S +  NG  HE
Sbjct: 534 VSIVDLNGTVHE 545


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 276/472 (58%), Gaps = 17/472 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++ L+  M+  G  PD FTY  V  +C  L  L  G  +HS V ++GL  D  V  SL+ 
Sbjct: 35  AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVD 94

Query: 163 MYARC---GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA-KEAVELFGRMREEEFLP 218
           MYA+C   G +D +RKVF+++ E +++SW ++I+ Y++ G   KEA+ELF +M      P
Sbjct: 95  MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 154

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  +  SVL +CG+L D   G+ V  + VK  +     +G++LI MY + G +  AR+ F
Sbjct: 155 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 214

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  K++V++NA++  YA+N  S EA +LFN +   G+     T   +LS  ASIGA+ 
Sbjct: 215 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 274

Query: 339 LGKWVDK------YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +        Y S + + + +      CG+I+ A +VF +M   N +SW +MI+  A
Sbjct: 275 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 334

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G A  AL +F +M + G   +PN++T++ VLSAC H G++ EG++ F+ M    G++P
Sbjct: 335 KHGFATRALEMFHKMLETG--TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 392

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+CMVDL  R+G L EA +F+  MP   D +V   LLGAC+   NT++ +   +++
Sbjct: 393 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 452

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           LE E  +   Y++ S + A+   W D  K+R  M+E+ + K  GCSWI +++
Sbjct: 453 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 504



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 187/345 (54%), Gaps = 17/345 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F Q+   N  ++  +I     + +    +++L+ +M    ++P++F++  V  +C NL 
Sbjct: 111 VFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 170

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  V+S   K+G+   + V +SLI+MYAR G+++ ARK FD + E++LVS+N+++ 
Sbjct: 171 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 230

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+K   ++EA  LF  + +        T  S+L     +G +  G+ + G ++K     
Sbjct: 231 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 290

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +ALI MY +CG +  A +VF+ M +++V++W +MIT +A++G +  A+ +F++M 
Sbjct: 291 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 350

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGL--RHDIFCGSID-------- 362
             G  P++IT + VLSAC+ +G +  G K  +    + G+  R + +   +D        
Sbjct: 351 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 410

Query: 363 -DALKVFEDMPV-TNEVSWNAMISALAFNGRA----HEALLLFER 401
            +A++    MP+  + + W  ++ A   +G      H A ++ E+
Sbjct: 411 VEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 455



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 178/325 (54%), Gaps = 26/325 (8%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A KVFD++ ER+LV+W  MI+ ++++G A++A++LF  M    ++PD  T  SVL +C +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALVPARRVFDAMVNKDVVTW 289
           LG L LGK +   V++  + L+  +G +L+DMY KC   G++  +R+VF+ M   +V++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 290 NAMITAYAQNG-LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
            A+ITAYAQ+G    EAI LF +M    + P+  +   VL AC ++     G+ V  YA 
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 349 QRGLRHDIFC------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           + G+   + C            G ++DA K F+ +   N VS+NA++   A N ++ EA 
Sbjct: 184 KLGIA-SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSC- 454
           LLF  ++  G     +  TF  +LS     G + +G ++   L+   +    KS    C 
Sbjct: 243 LLFNEIADTGIGI--SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY----KSNQCICN 296

Query: 455 -MVDLYARAGHLSEAWDFVERMPEK 478
            ++ +Y+R G++  A+     M ++
Sbjct: 297 ALISMYSRCGNIEAAFQVFNEMEDR 321



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 18/221 (8%)

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
           PA +VFD M  +++VTW  MIT +AQ G + +AI LF  M+ +G  PD+ T   VLSAC 
Sbjct: 3   PAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 62

Query: 333 SIGALDLGKWVDKYASQRGLRHDIFC--------------GSIDDALKVFEDMPVTNEVS 378
            +G L LGK +     + GL  D+                GS+DD+ KVFE MP  N +S
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 379 WNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           W A+I+A A +G    EA+ LF +M    G  RPN  +F  VL AC +      G +++ 
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMIS--GHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 180

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +   G+   +   + ++ +YAR+G + +A    + + EK
Sbjct: 181 Y-AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 220


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 276/472 (58%), Gaps = 17/472 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++ L+  M+  G  PD FTY  V  +C  L  L  G  +HS V ++GL  D  V  SL+ 
Sbjct: 40  AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVD 99

Query: 163 MYARC---GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA-KEAVELFGRMREEEFLP 218
           MYA+C   G +D +RKVF+++ E +++SW ++I+ Y++ G   KEA+ELF +M      P
Sbjct: 100 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRP 159

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  +  SVL +CG+L D   G+ V  + VK  +     +G++LI MY + G +  AR+ F
Sbjct: 160 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 219

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  K++V++NA++  YA+N  S EA +LFN +   G+     T   +LS  ASIGA+ 
Sbjct: 220 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 279

Query: 339 LGKWVDK------YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +        Y S + + + +      CG+I+ A +VF +M   N +SW +MI+  A
Sbjct: 280 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 339

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G A  AL +F +M + G   +PN++T++ VLSAC H G++ EG++ F+ M    G++P
Sbjct: 340 KHGFATRALEMFHKMLETG--TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 397

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+CMVDL  R+G L EA +F+  MP   D +V   LLGAC+   NT++ +   +++
Sbjct: 398 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 457

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           LE E  +   Y++ S + A+   W D  K+R  M+E+ + K  GCSWI +++
Sbjct: 458 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 509



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 187/345 (54%), Gaps = 17/345 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F Q+   N  ++  +I     + +    +++L+ +M    ++P++F++  V  +C NL 
Sbjct: 116 VFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 175

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  V+S   K+G+   + V +SLI+MYAR G+++ ARK FD + E++LVS+N+++ 
Sbjct: 176 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 235

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+K   ++EA  LF  + +        T  S+L     +G +  G+ + G ++K     
Sbjct: 236 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 295

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +ALI MY +CG +  A +VF+ M +++V++W +MIT +A++G +  A+ +F++M 
Sbjct: 296 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 355

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGL--RHDIFCGSID-------- 362
             G  P++IT + VLSAC+ +G +  G K  +    + G+  R + +   +D        
Sbjct: 356 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 415

Query: 363 -DALKVFEDMPV-TNEVSWNAMISALAFNGRA----HEALLLFER 401
            +A++    MP+  + + W  ++ A   +G      H A ++ E+
Sbjct: 416 VEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 460



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 178/325 (54%), Gaps = 26/325 (8%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A KVFD++ ER+LV+W  MI+ ++++G A++A++LF  M    ++PD  T  SVL +C +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALVPARRVFDAMVNKDVVTW 289
           LG L LGK +   V++  + L+  +G +L+DMY KC   G++  +R+VF+ M   +V++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 290 NAMITAYAQNG-LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
            A+ITAYAQ+G    EAI LF +M    + P+  +   VL AC ++     G+ V  YA 
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 349 QRGLRHDIFC------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           + G+   + C            G ++DA K F+ +   N VS+NA++   A N ++ EA 
Sbjct: 189 KLGIA-SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSC- 454
           LLF  ++  G     +  TF  +LS     G + +G ++   L+   +    KS    C 
Sbjct: 248 LLFNEIADTGIGI--SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY----KSNQCICN 301

Query: 455 -MVDLYARAGHLSEAWDFVERMPEK 478
            ++ +Y+R G++  A+     M ++
Sbjct: 302 ALISMYSRCGNIEAAFQVFNEMEDR 326



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 18/221 (8%)

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
           PA +VFD M  +++VTW  MIT +AQ G + +AI LF  M+ +G  PD+ T   VLSAC 
Sbjct: 8   PAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 67

Query: 333 SIGALDLGKWVDKYASQRGLRHDIFC--------------GSIDDALKVFEDMPVTNEVS 378
            +G L LGK +     + GL  D+                GS+DD+ KVFE MP  N +S
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 379 WNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           W A+I+A A +G    EA+ LF +M    G  RPN  +F  VL AC +      G +++ 
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMIS--GHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 185

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +   G+   +   + ++ +YAR+G + +A    + + EK
Sbjct: 186 Y-AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 225


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 269/459 (58%), Gaps = 13/459 (2%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           +M  LG +     Y  +  +C +  AL  G  VH+ + K       ++   L+  Y +C 
Sbjct: 41  EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 100

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            L+ ARKV DE+ E+++VSW +MIS YS+ G++ EA+ +F  M   +  P+E T  +VL 
Sbjct: 101 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLT 160

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           SC     L LGK + G +VK   D + ++GS+L+DMY K G +  AR +F+ +  +DVV+
Sbjct: 161 SCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVS 220

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
             A+I  YAQ GL  EA+ +F R++  G+ P+ +T   +L+A + +  LD GK    +  
Sbjct: 221 CTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVL 280

Query: 349 QRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +R L           D++  CG++  A ++F++MP    +SWNAM+   + +G   E L 
Sbjct: 281 RRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 340

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMV 456
           LF R+ ++    +P+ VT + VLS C H  + D G  ++D +++  +G+ P +EHY C+V
Sbjct: 341 LF-RLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIV 399

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D+  RAG + EA++F++RMP K    VLG+LLGAC+   + D+ + V   L+EIE  N+G
Sbjct: 400 DMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAG 459

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           NYVI S ++A+   W+D   +RA+M +K V+K PG SWI
Sbjct: 460 NYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWI 498



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 215/447 (48%), Gaps = 42/447 (9%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRP 81
           +LL  C   + +   Q++H  M+        +L  R++           A  +  ++   
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 115

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI   +      S +L ++ +M R   KP+ FT+  V  SC     L  G  +
Sbjct: 116 NVVSWTAMISRYSQTGHS-SEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQI 174

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + K   D    V  SL+ MYA+ G+++ AR++F+ + ERD+VS  ++I+GY+++G  
Sbjct: 175 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLD 234

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+E+F R++ E   P+ +T  S+L +   L  L  GK     V++ ++     + ++L
Sbjct: 235 EEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 294

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-YAGVNPD 320
           IDMY KCG L  A+R+FD M  +  ++WNAM+  Y+++GL  E + LF  M+    V PD
Sbjct: 295 IDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 354

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            +TL+ VLS C+       GK  D      GL       SI D +   E     +   + 
Sbjct: 355 AVTLLAVLSGCSH------GKMEDT-----GL-------SIYDGMVAGEYGIKPDTEHYG 396

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GRRLF 436
            ++  L   GR  EA    +RM      ++P       +L AC VH  + + E  G RL 
Sbjct: 397 CIVDMLGRAGRIDEAFEFIKRM-----PSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLI 451

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAG 463
           ++   + G      +Y  + +LYA AG
Sbjct: 452 EIEPENAG------NYVILSNLYASAG 472


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 297/542 (54%), Gaps = 21/542 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNF-----LLIRIIDLKDFNYASLLFHQISRPNEY 84
           L++  P   +  Q+H   L   +  PN      L+   +       A  +F ++   +  
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVP 134

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           A+N M+ GL     + + ++ L  +M   G+  D  T   V   C  L      + +H  
Sbjct: 135 AWNAMLSGLCRN-TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVY 193

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K GL  +  V ++LI +Y + G L  A  VF  +  RDLV+WNS+IS   + G    A
Sbjct: 194 AVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAA 253

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALID 263
           VELF  M E    PD +TLVS+  +    GD +  K V  +V +   D+ +   G+A++D
Sbjct: 254 VELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVD 313

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKI 322
           MY K   +  A++VFD + ++DVV+WN +IT Y QNGL+NEAI ++N M  + G+ P + 
Sbjct: 314 MYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQG 373

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T + VL A + +G L  G  +   + + GL  D++           CG + +A+ +FE M
Sbjct: 374 TFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHM 433

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  +   WNA+I+ L  +G   +AL LF +M +E    +P+ VTF+ +L+AC HAGLVD+
Sbjct: 434 PRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQE--EIKPDHVTFVSLLAACSHAGLVDQ 491

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           GR  FDLM + +G++P ++HY+CMVD+  RAG L EA++F++ MP K D  V GALLGAC
Sbjct: 492 GRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGAC 551

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N ++ +   Q L E++  N G YV+ S ++A +  WD    +R+L+R + + KTPG
Sbjct: 552 RIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPG 611

Query: 552 CS 553
            S
Sbjct: 612 WS 613



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 202/377 (53%), Gaps = 18/377 (4%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSA 173
           L+PD+FT+P +  +     +      +H+   ++G L  +   S SL+  Y R G++  A
Sbjct: 65  LRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
            +VFDE+ ERD+ +WN+M+SG  +   A +AV L GRM  E    D +TL SVL  C  L
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVL 181

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           GD  L   +  + VK+ +    ++ +ALID+YGK G L  A  VF  M  +D+VTWN++I
Sbjct: 182 GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSII 241

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           +A  Q G    A+ LF+ M  +GV PD +TL+ + SA A  G     K V  Y  +RG  
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWD 301

Query: 354 -HDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             DI  G+           ID A KVF+++P  + VSWN +I+    NG A+EA+ ++  
Sbjct: 302 VGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYND 361

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M    G  +P   TF+ VL A  + G + +G R+  L S   GL       +C++DLYA+
Sbjct: 362 MHNHEG-LKPIQGTFVSVLPAYSYLGGLQQGMRMHAL-SIKTGLNLDVYVTTCLIDLYAK 419

Query: 462 AGHLSEAWDFVERMPEK 478
            G L EA    E MP +
Sbjct: 420 CGKLVEAMFLFEHMPRR 436


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/468 (36%), Positives = 270/468 (57%), Gaps = 13/468 (2%)

Query: 101 SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           + ++ +++Q+ + G +PD F    +  SC +L A+  G  VH+   K  L+ D++V +SL
Sbjct: 298 AEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSL 357

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           I MYA+C  L  AR VF+ + E D +S+N+MI GYS++G    A+++F +MR     P  
Sbjct: 358 IDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSP 417

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           +T VS+LG       + L K + G +VK+   L+ Y GS+LID+Y K   +  A+ VF+ 
Sbjct: 418 LTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNL 477

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M N+D+V WNAMI   AQN    EA+ LFN+++ +G+ P++ T + +++  +++ ++  G
Sbjct: 478 MHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHG 537

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           +       + G   D             CG I +   +FE     + + WN+MIS  A +
Sbjct: 538 QQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQH 597

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G+A EAL +F  M   G    PN VTF+GVLSAC HAGLVDEG R FD M + + + P +
Sbjct: 598 GQAEEALYVFRMMGGTG--VEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGT 655

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+ +V+L+ R+G L  A +F+ERMP +    V  +LL AC    N ++ +   ++ L 
Sbjct: 656 EHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALL 715

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            + ++SG  V+ S I+A+  +W D+ K+R  M   GV K PG SWI +
Sbjct: 716 ADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEV 763



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 237/461 (51%), Gaps = 26/461 (5%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQIS 79
           L S L+ C  ++ V   QQ+H   +   +    ++   +I+L       + A L+F  + 
Sbjct: 117 LASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALP 176

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N   +  +I G +   Q    +L+L+ +M   G++PD F       +C+ L  L  G 
Sbjct: 177 VKNPVTWTAVITGYSQIGQG-GVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGR 235

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
             H   ++I ++ D  V ++LI +Y +C +L  ARK+FD +  R+LVSW +MI+GY +  
Sbjct: 236 QTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNS 295

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EA+ +F ++ +E + PD     S+L SCG L  +  G+ V    +K  ++ + Y+ +
Sbjct: 296 CDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKN 355

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +LIDMY KC  L  AR VF+A+   D +++NAMI  Y++ G    AI +F++M+Y  + P
Sbjct: 356 SLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKP 415

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVF 368
             +T + +L   +S  A++L K +     + G   D++ GS           ++DA  VF
Sbjct: 416 SPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVF 475

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             M   + V WNAMI  LA N +  EA+ LF ++   G A  PN+ TF+ +++       
Sbjct: 476 NLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLA--PNEFTFVALVTVASTLVS 533

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSE 467
           +  G++    +  +      S+H+  + ++D+YA+ G + E
Sbjct: 534 MFHGQQFHAQIIKAGA---DSDHHVSNALIDMYAKCGFIKE 571



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 214/430 (49%), Gaps = 28/430 (6%)

Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
           +Q    G  P+ F       +CA   A++ G  VH    +IGLD + +V  +LI +YA+ 
Sbjct: 103 FQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKV 162

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G +D+A  VFD +  ++ V+W ++I+GYS++G    A+ELFG+M  +   PD   L S +
Sbjct: 163 GCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAV 222

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  LG L  G+   G+  +  ++ +  + +ALID+Y KC  L  AR++FD M N+++V
Sbjct: 223 SACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLV 282

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W  MI  Y QN    EA+ +F ++   G  PD      +L++C S+ A+  G+ V  +A
Sbjct: 283 SWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHA 342

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            +  L  D +           C  + +A  VFE +   + +S+NAMI   +  G    A+
Sbjct: 343 IKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAI 402

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY---- 452
            +F +M     + +P+ +TF+ +L        V   +   +L     GLI KS       
Sbjct: 403 DVFSKMRY--CSLKPSPLTFVSLLG-------VSSSQSAIELSKQIHGLIVKSGTSLDLY 453

Query: 453 --SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLE 509
             S ++D+Y++   + +A      M  + D ++  A++ G  Q ++  +  +   QL + 
Sbjct: 454 AGSSLIDVYSKFSLVEDAKAVFNLMHNR-DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVS 512

Query: 510 IESSNSGNYV 519
             + N   +V
Sbjct: 513 GLAPNEFTFV 522



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 189/362 (52%), Gaps = 21/362 (5%)

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+     G   D  +++ L+  Y++ G++  AR++FD +  ++LVSW S IS +++ G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 202 KEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           ++AV LF   +       P+E  L S L +C     +  G+ V G  V+  +D N Y+G+
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGT 153

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALI++Y K G +  A  VFDA+  K+ VTW A+IT Y+Q G    A+ LF +M   GV P
Sbjct: 154 ALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRP 213

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D+  L   +SAC+++G L+ G+    YA +  +  D             C  +  A K+F
Sbjct: 214 DRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLF 273

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   N VSW  MI+    N    EA+ +F ++S+EG   +P+      +L++C     
Sbjct: 274 DCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGW--QPDVFACASILNSCGSLAA 331

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           + +GR++    + +     +S+ Y  + ++D+YA+  HL+EA    E + E  D I   A
Sbjct: 332 IWQGRQVH---AHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAED-DAISYNA 387

Query: 487 LL 488
           ++
Sbjct: 388 MI 389


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/518 (33%), Positives = 284/518 (54%), Gaps = 18/518 (3%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           F++  ++D+     D   A  +F ++   N  ++  M+ G +         L L+ +M++
Sbjct: 158 FVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSG-SIQNGIAEEGLVLFNEMRQ 216

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
             + P  +T   V  +CA L  L+ G  +H SV K GL  +  +S SL+ MYA+C K++ 
Sbjct: 217 DNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVED 276

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR+VFDE+   D+V W +MI GY++     +A++LF   +    +P+ +T+ +V+ +   
Sbjct: 277 ARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQ 336

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L  L LG+ V    VK     +  + +AL+DMY KC AL  A  +F  ++ KDVV WN+M
Sbjct: 337 LRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSM 396

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           +  Y++NG++NE+++LFNRM+  G++PD I+++  LSAC  +  L +GK    YA +   
Sbjct: 397 MAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAF 456

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +I+           C  +  A +VF DM   N V+W+AMI      G +  ++ LF  
Sbjct: 457 MSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNE 516

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M KE     PN+V F  +LSAC H G+V  G+  FD M+  F + P  +HY+CMVD+ AR
Sbjct: 517 MLKEN--IHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMAR 574

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG+L EA +F++ MP K    V G+ L  C+     +  +  ++ +  +       YV+ 
Sbjct: 575 AGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLM 634

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++ +   WD S  +R  M+E+G+ K PGCS +G ++
Sbjct: 635 SNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSVGHEN 672



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/490 (30%), Positives = 252/490 (51%), Gaps = 25/490 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINF------IQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           L+ LL  C + ++++ +H ++L+        I+    LL     L D   A  +     R
Sbjct: 24  LVLLLPACGTLRSLRALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARGVLDGTPR 83

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHG 138
           P+ YA+ VM+  L  A   ++ ++ L+  M+R        +        +C       +G
Sbjct: 84  PDAYAYRVMLGWLVDA-GSHADAVALHRDMRRRCPAAAQADVVLSLALKACVRSADFRYG 142

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H  V K G   D  V +SL+ MYA+ G L++ARKVFD + ER++VSW SM+SG  + 
Sbjct: 143 RRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQN 201

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G A+E + LF  MR++   P E T+VSVL +C  LG L  G+W+ G V+K  +  N ++ 
Sbjct: 202 GIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFIS 261

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L+DMY KC  +  ARRVFD +   D+V W AMI  Y QN    +A+ LF   K+  + 
Sbjct: 262 ASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIV 321

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIF----------CGSIDDALKV 367
           P+ +T+  V+SA A +  L LG+ V     + G +  D+           C ++ +A  +
Sbjct: 322 PNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSI 381

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  + + + V+WN+M++  + NG A+E+L+LF RM  +G    P+ ++ +  LSACV   
Sbjct: 382 FGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQG--ISPDAISVVNALSACVCLA 439

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            +  G+  F   +  +  +      + +++LY++   L  A      M ++ + +   A+
Sbjct: 440 DLHIGKG-FHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDR-NSVTWSAM 497

Query: 488 LGACQKQKNT 497
           +G    Q ++
Sbjct: 498 IGGYGMQGDS 507



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 214/415 (51%), Gaps = 25/415 (6%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           ++S+L  C     + Q   IH  ++   +   +F+   ++D+    +    A  +F ++ 
Sbjct: 226 MVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELE 285

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +   +  MI G T   ++   +L+L+   K + + P++ T   V  + A L  L  G 
Sbjct: 286 FVDIVLWTAMIVGYTQN-KRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGR 344

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           SVH+   K+G  E D V ++L+ MYA+C  L  A  +F  I  +D+V+WNSM++GYS+ G
Sbjct: 345 SVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENG 404

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A E++ LF RMR +   PD I++V+ L +C  L DL +GK    + +K     N Y+ +
Sbjct: 405 MANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNT 464

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+++Y KC  L  A+RVF+ M +++ VTW+AMI  Y   G S  +I LFN M    ++P
Sbjct: 465 ALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHP 524

Query: 320 DKITLIGVLSACASIGALDLGK-WVDKYASQ----RGLRH-----DIF--CGSIDDALKV 367
           +++    +LSAC+  G +  GK + D  A        ++H     D+    G++++AL+ 
Sbjct: 525 NEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEF 584

Query: 368 FEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            ++MP+   +S W + +       + H  L   E   K+  A  P    F  ++S
Sbjct: 585 IQNMPIKAGISVWGSFLHGC----KLHSRLEFGEEAIKKMAALHPETPDFYVLMS 635


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/505 (35%), Positives = 275/505 (54%), Gaps = 55/505 (10%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
             +F++A  +F  I  PN + +N++I+G      K   ++  Y +M  +  +P+ FTYP 
Sbjct: 80  FSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN-NKLFKAIYFYGRMV-IDARPNKFTYPT 137

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +F +C+   A+  G  +H  V K G+  D H+  + I MYA  G+L+ ARK+F    E D
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESD 196

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +V WN+MI GY K G  + A  LF +M  +                       +G W   
Sbjct: 197 VVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN----------------------IGSW--- 231

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
                         + +I+   K G L  AR++FD M  +D ++W++M+  Y   G   E
Sbjct: 232 --------------NVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKE 277

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ +F +M+     P +  L  VL+AC++IGA+D G+WV  Y  +  ++ D         
Sbjct: 278 ALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLD 337

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG +D   +VFE+M      +WNAMI  LA +GRA +AL LF ++ +  G  +PN 
Sbjct: 338 MYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQE--GRMKPNG 395

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +T +GVL+AC HAG VD+G R+F  M   +G+ P+ EHY CMVDL  R+G  SEA D + 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP K +  V GALLGAC+   N D+++RV ++LLE+E  NSG YV+ S I+A +  +DD
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 534 SAKMRALMREKGVSKTPGCSWIGID 558
            +K+R LM+ +G+   PG S + ++
Sbjct: 516 VSKIRKLMKNRGIKTVPGVSIVDLN 540



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 45/372 (12%)

Query: 33  KCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRG 92
           KC   +  + +  QM +  I   N ++  +    +   A  LF ++S  +E +++ M+ G
Sbjct: 209 KCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDG 268

Query: 93  LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
             +A  +Y  +L+++ QM+R   +P  F    V  +C+N+ A++ G  VH+ + +  +  
Sbjct: 269 YISA-GRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKL 327

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           D  +  +L+ MYA+CG+LD   +VF+E++ER++ +WN+MI G +  G A++A+ELF +++
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
           E    P+ ITLV VL +C             GFV     D    +   + + YG      
Sbjct: 388 EGRMKPNGITLVGVLTACAH----------AGFV-----DKGLRIFQTMREFYG------ 426

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
                    V+ ++  +  M+    ++GL +EA  L N M    + P+      +L AC 
Sbjct: 427 ---------VDPELEHYGCMVDLLGRSGLFSEAEDLINSMP---MKPNAAVWGALLGACR 474

Query: 333 SIGALDLGKWVDKY--------ASQRGLRHDIFC--GSIDDALKVFEDMPVTNEVSWNAM 382
             G  DL + V K         + +  L  +I+   G  DD  K+ + M     +     
Sbjct: 475 IHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK-NRGIKTVPG 533

Query: 383 ISALAFNGRAHE 394
           +S +  NG  HE
Sbjct: 534 VSIVDLNGTVHE 545


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/442 (38%), Positives = 263/442 (59%), Gaps = 13/442 (2%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA   A+    + H  + +I L+ D  + + LI  Y++CG ++ AR+VFD + ER LVSW
Sbjct: 63  CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 122

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MI  Y++     EA+++F  MR E F   E T+ SVL +CG   D +  K +    VK
Sbjct: 123 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVK 182

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +DLN Y+G+AL+D+Y KCG +  A +VF++M +K  VTW++M+  Y QN    EA++L
Sbjct: 183 TCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLL 242

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           + R +   +  ++ TL  V+ AC+++ AL  GK +     + G   ++F           
Sbjct: 243 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAK 302

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CGS+ ++  +F ++   N   WN +IS  A + R  E ++LFE+M ++G    PN+VTF 
Sbjct: 303 CGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDG--MHPNEVTFS 360

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +LS C H GLV+EGRR F LM +++GL P   HYSCMVD+  RAG LSEA++ ++ +P 
Sbjct: 361 SLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPF 420

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
                + G+LL +C+  KN ++++   + L E+E  N+GN+V+ S I+A  K W++ AK 
Sbjct: 421 DPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKS 480

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R L+R+  V K  G SWI I D
Sbjct: 481 RKLLRDCDVKKVRGKSWIDIKD 502



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 147/258 (56%), Gaps = 3/258 (1%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA-NLLALNHGVSVHS 143
           ++N MI GL T  +  S +L ++ +M+  G K   FT   V  +C  N  AL     +H 
Sbjct: 121 SWNTMI-GLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDAL-ECKKLHC 178

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K  +D + +V  +L+ +YA+CG +  A +VF+ ++++  V+W+SM++GY +    +E
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+ L+ R +      ++ TL SV+ +C +L  L+ GK +   + K+    N ++ S+ +D
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 298

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG+L  +  +F  +  K++  WN +I+ +A++    E ++LF +M+  G++P+++T
Sbjct: 299 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 358

Query: 324 LIGVLSACASIGALDLGK 341
              +LS C   G ++ G+
Sbjct: 359 FSSLLSVCGHTGLVEEGR 376



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 14/264 (5%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L  C   G ++  K   G +++  ++ +  + + LI+ Y KCG +  AR+VFD M+ + 
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA-SIGALDLGKW-- 342
           +V+WN MI  Y +N + +EA+ +F  M+  G    + T+  VLSAC  +  AL+  K   
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 178

Query: 343 --------VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
                   ++ Y     L     CG I DA++VFE M   + V+W++M++    N    E
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           ALLL+ R  +   +   N  T   V+ AC +   + EG+++  ++  S G        S 
Sbjct: 239 ALLLYRRAQR--MSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASS 295

Query: 455 MVDLYARAGHLSEAWDFVERMPEK 478
            VD+YA+ G L E++     + EK
Sbjct: 296 AVDMYAKCGSLRESYIIFSEVQEK 319



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 119/227 (52%), Gaps = 3/227 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +   +   ++ M+ G     + Y  +L LY + +R+ L+ + FT   V  +C+
Sbjct: 208 AVQVFESMQDKSSVTWSSMVAGYVQN-KNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 266

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           NL AL  G  +H+ + K G   +  V+ S + MYA+CG L  +  +F E++E++L  WN+
Sbjct: 267 NLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNT 326

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKN 249
           +ISG++K    KE + LF +M+++   P+E+T  S+L  CG  G +  G ++ +      
Sbjct: 327 IISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTY 386

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
            +  N    S ++D+ G+ G L  A  +  ++  +     W +++ +
Sbjct: 387 GLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 433


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 286/497 (57%), Gaps = 16/497 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F ++   NE  +  MI G   A Q+ +  + +++  M+R     + F +  V  + 
Sbjct: 165 AREVFDRMPERNEVTWATMISGY--AIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSAL 222

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A    ++ G  +H    K GL     + ++L+TMYA+CG LD + +VF+   +++ ++W+
Sbjct: 223 AVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWS 282

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+GY++ G + +A++LF RM      P E TLV VL +C D   +  GK V  +++K 
Sbjct: 283 AMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKL 342

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +   Y+ +AL+DMY K G    AR+ F+ +   D+V W +MI  Y QNG + +A+ L+
Sbjct: 343 GFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLY 402

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            RM+  G+ P+++T+  VL AC+++ A D G+ +     + GL  ++            C
Sbjct: 403 CRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKC 462

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G++++   VF  MP  + +SWNAMIS L+ NG   EAL LFE M ++    +P+DVTF+ 
Sbjct: 463 GNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQD--TKPDDVTFVN 520

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSAC H GLVD G   F +M   FGL+PK EHY+CMVD+ +RAG L EA +F+E     
Sbjct: 521 VLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTID 580

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +   LLGAC+  +N ++     + L+E+ S  S  YV+ S I+  L   +D  ++R
Sbjct: 581 HGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVR 640

Query: 539 ALMREKGVSKTPGCSWI 555
           ++M+ +GVSK PGCSWI
Sbjct: 641 SMMKVRGVSKEPGCSWI 657



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 141/420 (33%), Positives = 226/420 (53%), Gaps = 15/420 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A L+F +I   +  ++N +I G +       S  ++L+ +M+   + P+  T+  +F + 
Sbjct: 62  AKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAA 121

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +NL ++  G   H+   K+    D  V  SL+ MY + G L  AR+VFD + ER+ V+W 
Sbjct: 122 SNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWA 181

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MISGY+    A EA E+F  MR EE   +E    SVL +      +  GK +    VK 
Sbjct: 182 TMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKT 241

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            + +   + +AL+ MY KCG+L  + +VF+   +K+ +TW+AMIT YAQ+G S++A+ LF
Sbjct: 242 GLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLF 301

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           +RM +AG+NP + TL+GVL+AC+   A++ GK V  Y  + G    ++            
Sbjct: 302 SRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKS 361

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G  +DA K F  +   + V W +MI+    NG   +AL L+ RM  EG    PN++T   
Sbjct: 362 GVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEG--ILPNELTMAS 419

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC +    D+GR++    +  +GL  +    S +  +YA+ G+L E      RMPE+
Sbjct: 420 VLKACSNLAAFDQGRQI-HARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPER 478



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 223/443 (50%), Gaps = 25/443 (5%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDSA 173
           L P N +     +   +  +L  G ++H+ + K+       ++++SLI  YA+C  L  A
Sbjct: 3   LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKA 62

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEA--VELFGRMREEEFLPDEITLVSVLGSCG 231
           + VFD I  +D++SWN +I+GYS+ G    +  +ELF RMR +  LP+  T   +  +  
Sbjct: 63  KLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAAS 122

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
           +L  +  G+      +K     + ++GS+L++MY K G L  AR VFD M  ++ VTW  
Sbjct: 123 NLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWAT 182

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MI+ YA   L+ EA  +F  M+    + ++     VLSA A    +D GK +   A + G
Sbjct: 183 MISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTG 242

Query: 352 LRHDIF-------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           L   +F             CGS+DD+L+VFE     N ++W+AMI+  A +G +H+AL L
Sbjct: 243 LL--VFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKL 300

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMV 456
           F RM   G    P++ T +GVL+AC  A  V+EG+++ + +     L  +S+ Y  + +V
Sbjct: 301 FSRMHFAG--INPSEFTLVGVLNACSDACAVEEGKQVHNYL---LKLGFESQLYIMTALV 355

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D+YA++G   +A      + +    +    + G  Q  +N D      ++ +E    N  
Sbjct: 356 DMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNEL 415

Query: 517 NYVISSKIFANLKMWDDSAKMRA 539
                 K  +NL  +D   ++ A
Sbjct: 416 TMASVLKACSNLAAFDQGRQIHA 438



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 168/305 (55%), Gaps = 7/305 (2%)

Query: 41  QQIH-----TQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           +QIH     T +L+ F+   N L+         + +  +F   +  N   ++ MI G   
Sbjct: 232 KQIHCLAVKTGLLV-FLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQ 290

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           +   +  +LKL+ +M   G+ P  FT   V  +C++  A+  G  VH+ + K+G +   +
Sbjct: 291 SGDSHK-ALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLY 349

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           +  +L+ MYA+ G  + ARK F+ +++ DLV W SMI+GY + G  ++A+ L+ RM+ E 
Sbjct: 350 IMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEG 409

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
            LP+E+T+ SVL +C +L     G+ +    +K  + L   +GSAL  MY KCG L    
Sbjct: 410 ILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGN 469

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            VF  M  +D+++WNAMI+  +QNG   EA+ LF  M+     PD +T + VLSAC+ +G
Sbjct: 470 IVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMG 529

Query: 336 ALDLG 340
            +D G
Sbjct: 530 LVDSG 534


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/472 (35%), Positives = 276/472 (58%), Gaps = 14/472 (2%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           K   +LK + +MK LG +P++ T+  V  SC  LL L  G  VH  + +  +  D  V  
Sbjct: 187 KAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLS 246

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           +L+ MY +CG L+ A++VF++I  ++ ++WN+MI+GYS  G ++  +EL  RM +E   P
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKP 306

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
             +TL S++ +      L  GK++ G++++N++D++ ++  +LID Y KCG +  A  +F
Sbjct: 307 TLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIF 366

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             +   +VV+WN MI+ +   G   +A+ +++ MK   V PD +T    LSAC+ + ALD
Sbjct: 367 RTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALD 426

Query: 339 LGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +        L           D++  CG +D+A K+F  +P  + VSW +MI A  
Sbjct: 427 KGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYG 486

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G+A EAL LF+ M K     R + VTF+ VLSAC HAGLVDEG   F+ M   + + P
Sbjct: 487 SHGQASEALRLFDEMQKLN--VRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKP 544

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQL 506
             EHYSC++DL  RAG L EA++ ++R  E   +I +L  L  AC    N  +  ++ ++
Sbjct: 545 GIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKM 604

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L+E++  +   Y++ S ++A++  WD+  K+R  M+E G+ K+PGCSWI I+
Sbjct: 605 LIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEIN 656



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 243/472 (51%), Gaps = 24/472 (5%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           LLS L+ C S+K ++Q   IH ++     Q    L   +I       D+  A L+F    
Sbjct: 6   LLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTND 65

Query: 80  RPNEYAF-NVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNH 137
            P + +  N ++   T  + ++  +L+L+ Q+     ++PD +TYP V  +C  L  + +
Sbjct: 66  CPLDVSLWNALLSAYTNNF-RFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIY 124

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+ + K GL  D  V  SL+ MYA+C +   A K+FDE  +RD+  WN++IS Y K
Sbjct: 125 GRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFK 184

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G A+ A++ F +M+E  F P+ +T   V+ SC  L +L  GK V   +++ ++ L+ ++
Sbjct: 185 DGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFV 244

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            SAL+DMYGKCG L  A+ VF+ +  K+ +TWNAMIT Y+  G S   I L  RM   G 
Sbjct: 245 LSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGT 304

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P  +TL  ++ A +    L  GK++  Y  +  +  DIF           CG +  A  
Sbjct: 305 KPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAET 364

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F  +     VSWN MIS     G   +AL +++ M +     +P+ +TF   LSAC   
Sbjct: 365 IFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEH--HVKPDALTFSSTLSACSQL 422

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +D+GR L   + +   L         ++D+YA+ G + EA     ++P++
Sbjct: 423 AALDKGRELHYCIINH-KLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKR 473



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 14/171 (8%)

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D +TL+  L  C S   L  GK + +     G + +I            C     A  VF
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 369 EDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           +      +VS WNA++SA   N R  EAL LF++++      RP+  T+  VL AC   G
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNC-NSYVRPDFYTYPVVLKACGGLG 120

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            V  GRR+ + +  + GLI      S ++++YA+     +A    +  P++
Sbjct: 121 RVIYGRRIHNHLLKT-GLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQR 170


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/540 (34%), Positives = 304/540 (56%), Gaps = 27/540 (5%)

Query: 40  VQQIHTQMLIN--FIQKPNFLLIRIID-----LKDFNYASLLFHQISRPNEYAFNVMI-- 90
           ++QIH  +L +  F  + +  L R++         F YA  L  Q+   +   ++ +I  
Sbjct: 17  LKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGH 76

Query: 91  -RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
             G  T  ++ S     Y  M+R G+ P   T+P +  +   L   N     H+ + K G
Sbjct: 77  FSGGITLNRRLS--FLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFG 133

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           LD D  V +SLI+ Y+  G  D A ++FD   ++D+V+W +MI G+ + G A EA+  F 
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFV 193

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKC 268
            M++     +E+T+VSVL + G + D+  G+ V G  ++  ++  + ++GS+L+DMYGKC
Sbjct: 194 EMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
                A++VFD M +++VVTW A+I  Y Q+   ++ +++F  M  + V P++ TL  VL
Sbjct: 254 SCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVL 313

Query: 329 SACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEV 377
           SACA +GAL  G+ V  Y  +  +  +           + CG +++A+ VFE +   N  
Sbjct: 314 SACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 373

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           +W AMI+  A +G A +A  LF  M        PN+VTF+ VLSAC H GLV+EGRRLF 
Sbjct: 374 TWTAMINGFAAHGYARDAFDLFYTML--SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFL 431

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
            M   F + PK++HY+CMVDL+ R G L EA   +ERMP +   +V GAL G+C   K+ 
Sbjct: 432 SMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDY 491

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++ +     +++++ S+SG Y + + +++  + WD+ A++R  M+++ V K+PG SWI +
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEV 551


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/466 (37%), Positives = 271/466 (58%), Gaps = 15/466 (3%)

Query: 106 LYYQMKRLGLKPDNFTYPFVFISCAN-LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           L+  M   G+KPD+ T+   F+ C N LL+L H   +H  + +  +  D  +  +LI +Y
Sbjct: 247 LFRGMISAGIKPDSITFA-SFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIY 305

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
            +C  ++ A+K+  +    D V   +MISGY   G  KEA+E F  + +E   P  +T  
Sbjct: 306 FKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFS 365

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           S+  +   L  L LGK + G ++K K+D   ++GSA++DMY KCG L  A RVF+ +  K
Sbjct: 366 SIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEK 425

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D + WN+MIT+ +QNG   EAI LF +M   G   D +++ G LSACA++ AL  GK + 
Sbjct: 426 DAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIH 485

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
               +  LR D++           CG+++ + +VF+ M   NEVSWN++ISA   +G   
Sbjct: 486 GLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLK 545

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           E L LF  M + G   +P+ VTF+G++SAC HAG VDEG R + LM+  +G+  + EHY+
Sbjct: 546 ECLALFHEMLRNG--IQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYA 603

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           C+ D++ RAG L EA++ +  MP   D  V G LLGAC    N ++++   + L +++  
Sbjct: 604 CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 663

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           NSG YV+ + + A    W    K+R++M+E+GV K PG SWI +++
Sbjct: 664 NSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNN 709



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 220/448 (49%), Gaps = 19/448 (4%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           + +R   LKD   A  LF+ +      A+N MIRG T   Q ++++L  Y +M   G+ P
Sbjct: 1   MYVRTGSLKD---AKNLFYTLQLGCTSAWNWMIRGFTMMGQ-FNYALLFYLKMLGAGVSP 56

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D +T+P+V  +C  L ++  G  VH +V  +GL ED  V  SLI +YA  G L  A+ +F
Sbjct: 57  DKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D I ++D V WN M++GY K G +  A+++F  MR  E  P+ +T   VL  C     L 
Sbjct: 117 DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LG  + G  V   ++L+  + + L+ MY KC  L  AR++FD     D+V+WN +I+ Y 
Sbjct: 177 LGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYV 236

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           QNGL  EA  LF  M  AG+ PD IT    L     + +L   K +  Y  +  +  D+F
Sbjct: 237 QNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      C  ++ A K+       + V    MIS    NG+  EAL  F  + +E 
Sbjct: 297 LKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQE- 355

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
              +P  VTF  +  A      ++ G+ L   +  +  L  K    S ++D+YA+ G L 
Sbjct: 356 -RMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLD 413

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQ 494
            A     R+ EK D I   +++ +C + 
Sbjct: 414 LACRVFNRITEK-DAICWNSMITSCSQN 440



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 201/392 (51%), Gaps = 18/392 (4%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+     L  + +  S K  ++IH  ++ + +    FL   +ID+    +D   A  +  
Sbjct: 260 SITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILC 319

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q S  +      MI G      K   +L+ +  + +  +KP + T+  +F + A L ALN
Sbjct: 320 QSSSFDTVVCTTMISGYVLN-GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN 378

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H S+ K  LDE  HV  +++ MYA+CG+LD A +VF+ I E+D + WNSMI+  S
Sbjct: 379 LGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCS 438

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G   EA+ LF +M  E    D +++   L +C +L  L  GK + G ++K  +  + Y
Sbjct: 439 QNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLY 498

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             S+LIDMY KCG L  +RRVFD M  ++ V+WN++I+AY  +G   E + LF+ M   G
Sbjct: 499 AESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNG 558

Query: 317 VNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDA 364
           + PD +T +G++SAC   G +D G        ++Y     + H     D+F   G +D+A
Sbjct: 559 IQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEA 618

Query: 365 LKVFEDMPVTNEVS-WNAMISALAFNGRAHEA 395
            +    MP   +   W  ++ A   +G    A
Sbjct: 619 FETINSMPFPPDAGVWGTLLGACHIHGNVELA 650


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 279/487 (57%), Gaps = 20/487 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANL 132
           +F  +  P+   +N ++ GL       S +L+ + +M  +G ++PD+ T      + A  
Sbjct: 171 VFDAVPSPDTILWNTLLAGLPG-----SVALEAFVRMVEVGRVRPDSTTLASSLRAAAEA 225

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
             +  G  VH    K GL E +HV   L+++Y++CG +D AR +FD + + DLV++N++I
Sbjct: 226 SHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALI 285

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           SGYS  G  + +VELF  +   ++ P+  TLV+V+      G  +L + +  FVVK ++D
Sbjct: 286 SGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLD 345

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + +AL  +Y +   +  AR +FDAM  K + +WNAMI+ YAQNGL+  A+ LF  M
Sbjct: 346 ADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLM 405

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +   V P+  T+   LSACA +GAL LG WV +  ++  L  +++           CGSI
Sbjct: 406 QELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSI 465

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            +A  +F+ M   N VSWNAMIS    +GR  EAL L++ M        P   TF+ VL 
Sbjct: 466 AEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLD--ACILPTSSTFLSVLY 523

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD 480
           AC H GLVDEG+++F +M++ + + P  EH +CMVDL  RAG L+EA D +   P+  + 
Sbjct: 524 ACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIG 583

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             V GALL AC   KN+D+++   Q L E++S N+G YV+ S ++ + K + ++A  + L
Sbjct: 584 PGVWGALLSACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVGQYL 643

Query: 541 MREKGVS 547
           + E  VS
Sbjct: 644 LIEAAVS 650



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 191/359 (53%), Gaps = 19/359 (5%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D + A  LF ++  P+  A+N +I G +      S S++L+ ++     +P++ T   V 
Sbjct: 262 DMDCARSLFDRMEDPDLVAYNALISGYSVNGMVES-SVELFKELAASDWRPNSSTLVAVI 320

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
              +          +H+ V K  LD D  VS +L T+Y R   ++SAR +FD + E+ + 
Sbjct: 321 PVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTME 380

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MISGY++ G  + AVELF  M+E    P+  T+ S L +C  LG L LG WV   +
Sbjct: 381 SWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRII 440

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            K  ++LN Y+ +ALIDMY KCG++  AR +FD M NK+VV+WNAMI+ Y  +G   EA+
Sbjct: 441 AKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEAL 500

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DI 356
            L+  M  A + P   T + VL AC+  G +D G+ V     ++Y    G+ H     D+
Sbjct: 501 KLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDL 560

Query: 357 F--CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALL----LFERMSKEGG 407
               G +++AL +  + P        W A++SA   +  +  A L    LFE  S+  G
Sbjct: 561 LGRAGKLNEALDLISEFPQSAIGPGVWGALLSACMVHKNSDLAKLASQKLFELDSENAG 619



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 202/427 (47%), Gaps = 46/427 (10%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF    RP+ +  N ++R L         SL+ +     L   PD+F++ F   S ++  
Sbjct: 76  LFRAFPRPDRFLRNALLRSLP--------SLRPHL----LFPSPDSFSFAFAATSLSSSC 123

Query: 134 ALN----------HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           +            HG+SV +     G   D  V+ +L  +Y +  K+D ARKVFD +   
Sbjct: 124 SSRGRDAAAARTLHGLSVAA-----GYAADTFVASALAKLYFKLSKVDDARKVFDAVPSP 178

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           D + WN++++G         A+E F RM E     PD  TL S L +  +   + +G+ V
Sbjct: 179 DTILWNTLLAGLP----GSVALEAFVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCV 234

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G+ VK  +  + ++ + L+ +Y KCG +  AR +FD M + D+V +NA+I+ Y+ NG+ 
Sbjct: 235 HGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMV 294

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------- 355
             ++ LF  +  +   P+  TL+ V+   +  G   L + +  +  +  L  D       
Sbjct: 295 ESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTAL 354

Query: 356 --IFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
             ++C    ++ A  +F+ MP     SWNAMIS  A NG    A+ LF+ M +     +P
Sbjct: 355 TTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELN--VQP 412

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           N  T    LSAC   G +  G  +  +++    L       + ++D+YA+ G ++EA   
Sbjct: 413 NPTTISSTLSACAQLGALSLGTWVHRIIAKE-NLELNVYVMTALIDMYAKCGSIAEARSI 471

Query: 472 VERMPEK 478
            +RM  K
Sbjct: 472 FDRMDNK 478


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/495 (35%), Positives = 287/495 (57%), Gaps = 15/495 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF ++S P+  ++N MI G         + L+++ QM  LG++ D  T   V ++CAN+ 
Sbjct: 252 LFDELSEPDVVSWNSMINGCVVNGFS-GNGLEIFIQMLILGVEVDLTTLVSVLVACANIG 310

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L+ G ++H    K    E+   S++L+ MY++CG L+ A +VF ++ +  +VSW S+I+
Sbjct: 311 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIA 370

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y + G   +A+ LF  M+ +   PD  T+ S++ +C     L  G+ V  +V+KN M  
Sbjct: 371 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGS 430

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +ALI+MY KCG++  AR VF  +  KD+V+WN MI  Y+QN L NEA+ LF  M+
Sbjct: 431 NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
                PD IT+  VL ACA + ALD G+ +  +  +RG   D+            CG + 
Sbjct: 491 KQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 549

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  +F+ +P  + +SW  MI+    +G  +EA+  F  M   G    P++ +F  +L+A
Sbjct: 550 LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAG--IEPDESSFSAILNA 607

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H+GL++EG + F+ M +  G+ PK EHY+C+VDL AR G+LS+A+ F+E MP K D  
Sbjct: 608 CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 667

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + G LL  C+   +  ++++V + + E+E  N+  YV+ + ++A  + W++  K+R  M+
Sbjct: 668 IWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQ 727

Query: 543 EKGVSKTPGCSWIGI 557
           ++G  + PGCSWI +
Sbjct: 728 KRGFKQNPGCSWIEV 742



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/471 (31%), Positives = 246/471 (52%), Gaps = 29/471 (6%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRP 81
           S+L+ C   K+++   ++H+ ++ N I     L  +++    +  D      +F +I   
Sbjct: 99  SVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             + +N+++         +  S+ L+ +M++LG+  + +T+  V    A L  +     V
Sbjct: 159 KVFLWNLLMSEYAKIGN-FRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V K+G   +  V +SLI  Y + G ++SA  +FDE+ E D+VSWNSMI+G    G++
Sbjct: 218 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 277

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
              +E+F +M       D  TLVSVL +C ++G+L LG+ + GF VK          + L
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTL 337

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG L  A  VF  M +  +V+W ++I AY + GL ++AI LF+ M+  GV PD 
Sbjct: 338 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDI 397

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFED 370
            T+  ++ ACA   +LD G+ V  Y  + G+  ++            CGS+++A  VF  
Sbjct: 398 YTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSK 457

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +PV + VSWN MI   + N   +EAL LF  M K+    +P+D+T   VL AC     +D
Sbjct: 458 IPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ---FKPDDITMACVLPACAGLAALD 514

Query: 431 EGRRLFD--LMSSSFGLIPKSEHYSC-MVDLYARAGHLSEAWDFVERMPEK 478
           +GR +    L    F  +    H +C +VD+YA+ G L  A    + +P+K
Sbjct: 515 KGREIHGHILRRGYFSDL----HVACALVDMYAKCGLLVLAQLLFDMIPKK 561



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 186/369 (50%), Gaps = 14/369 (3%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           +Y  V   CA   +L  G  VHS +   G+  D+ +   L+ MY  CG L   RK+FD+I
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
               +  WN ++S Y+K+G  +E+V LF +M++   + +  T   VL     LG +   K
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V G+V+K     N  + ++LI  Y K G +  A  +FD +   DVV+WN+MI     NG
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 275

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            S   + +F +M   GV  D  TL+ VL ACA+IG L LG+ +  +  +     ++    
Sbjct: 276 FSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSN 335

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG+++ A +VF  M  T  VSW ++I+A    G   +A+ LF+ M  +G   
Sbjct: 336 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG--V 393

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           RP+  T   ++ AC  +  +D+GR +   +  + G+       + ++++YA+ G + EA 
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEAR 452

Query: 470 DFVERMPEK 478
               ++P K
Sbjct: 453 LVFSKIPVK 461



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 18/299 (6%)

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+ I+ + +MG  + A+EL  + +  E   +  +  SVL  C +   L  GK V   ++ 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N + ++  +G+ L+ MY  CG LV  R++FD ++N  V  WN +++ YA+ G   E++ L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F +M+  GV  +  T   VL   A++G +   K V  Y  + G   +             
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            G ++ A  +F+++   + VSWN+MI+    NG +   L +F +M   G     +  T +
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG--VEVDLTTLV 300

Query: 418 GVLSACVHAGLVDEGRRLFDL-MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            VL AC + G +  GR L    + + F    +    + ++D+Y++ G+L+ A +   +M
Sbjct: 301 SVLVACANIGNLSLGRALHGFGVKACFS--EEVVFSNTLLDMYSKCGNLNGATEVFVKM 357


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/477 (37%), Positives = 264/477 (55%), Gaps = 19/477 (3%)

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIG 149
           R LT++   + H+L+++  +      P + T P    S + L   L  G  +H+   K+ 
Sbjct: 47  RALTSS-ALHLHALRVHCLLP----NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLP 101

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
              + HV  SL+++YA+CG L  A++VFDE+     V W ++I+ Y   G  +EAV +  
Sbjct: 102 SHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVAR 161

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
                   PD  T V VL +C  + DL  G+ V     +  +  + ++ +A +D+Y KCG
Sbjct: 162 NAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCG 221

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            +  AR VFD M +KD V W AM+  YA NG   EA+ LF  M+  G+ PD   + G LS
Sbjct: 222 EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 281

Query: 330 ACASIGALDLGKWV------DKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVS 378
           AC  +GALDLG+        D++     L   +      CGS  +A  VF+ M   + + 
Sbjct: 282 ACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIV 341

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WNAMI  L   G    A  L  +M K G   + ND TFIG+L +C H GL+ +GRR F  
Sbjct: 342 WNAMILGLGMTGHEKIAFALVGQMEKSG--VKLNDNTFIGLLCSCTHTGLIQDGRRYFHN 399

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M+  + + P+ EHY CMVDL +RAG L EA   V+ MP   + ++LGALLG C+  +NT+
Sbjct: 400 MTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTE 459

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +++ V++ L+ +E  NSGNYV+ S I++N   W+D+AK+R  M+ KGV K P CSW+
Sbjct: 460 LAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWV 516


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/473 (37%), Positives = 271/473 (57%), Gaps = 21/473 (4%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L L+ +M+   L  + FT   +  +C  L  L+ G  VH  V K G++ + +++ SL+ M
Sbjct: 220 LMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNM 279

Query: 164 YARCGKLDSARKVFDEIRER------DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           Y +CG +  AR VFDE          DLV W +MI GY++ GY + A+ELF   +    L
Sbjct: 280 YVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRIL 339

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           P+ +TL S+L +C  L ++V+GK +   VVK  +D +  + ++L+DMY KCG +  A  V
Sbjct: 340 PNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYV 398

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F   V+KDVV+WN++I+ YAQ+G + EA+ LFNRM+     PD +T++GVLSACAS+GA 
Sbjct: 399 FATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAH 458

Query: 338 DLGKWVDKYASQRGL-RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
            +G  +  +A + GL    I+           CG    A  VF+ M   N V+W AMI  
Sbjct: 459 QIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGG 518

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
               G    +L LF  M KE     PN+V F  +L+AC H+G+V+EG  +FD M      
Sbjct: 519 CGMQGDGVGSLALFRDMLKE--ELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNF 576

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
           +P  +HY+CMVDL ARAG+L EA DF+++MP +    V GA L  C    N D  +  ++
Sbjct: 577 VPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIR 636

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            +LE+    +  YV+ S ++A+   W    ++R +++++G++K PG S + +D
Sbjct: 637 RMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGVSLVEMD 689



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 165/493 (33%), Positives = 255/493 (51%), Gaps = 36/493 (7%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF-NYASLLFHQISRPNEYAF 86
           + L + C    TV+ +H  ++I+    P+  LI +     F  +A  LFH++  P  ++F
Sbjct: 44  IHLSRICKHPTTVKTLHASLIISG-HPPDTTLISLYASFGFLRHARTLFHRLPSPTHHSF 102

Query: 87  NVMIRGLTTAWQ----KYSHSLKLYYQMKR--LGLKPDNFTYPFVFISCANLLALNHGVS 140
            ++IR     W      +SH +  +Y + R  LG   D   +  +  + + L  +     
Sbjct: 103 KLIIR-----WHFLNDVHSHVVS-FYNLARTTLGSFNDLVVFSILLKTASQLRDIVLTTK 156

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H ++ K     D  V  SL+  Y++CGKL  ARKVFDEI +R +VSW SMI  Y +   
Sbjct: 157 LHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNEC 215

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A+E + LF RMRE     +  T+ S++ +C  LG L  GKWV G+V+KN +++N Y+ ++
Sbjct: 216 AEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATS 275

Query: 261 LIDMYGKCGALVPARRVFDAMV------NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
           L++MY KCG +  AR VFD           D+V W AMI  Y Q G    A+ LF   K+
Sbjct: 276 LLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKW 335

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--------DIF--CGSIDDA 364
             + P+ +TL  +LSACA +  + +GK +     + GL          D++  CG I DA
Sbjct: 336 YRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVDMYAKCGLIPDA 395

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF      + VSWN++IS  A +G A+EAL LF RM  E  +  P+ VT +GVLSAC 
Sbjct: 396 HYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRME--SFLPDAVTVVGVLSACA 453

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
             G    G  L    +  +GL+  S +  + +++ YA+ G  + A    + M EK + + 
Sbjct: 454 SVGAHQIGLSLHGF-ALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEK-NAVT 511

Query: 484 LGALLGACQKQKN 496
             A++G C  Q +
Sbjct: 512 WAAMIGGCGMQGD 524


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/515 (35%), Positives = 295/515 (57%), Gaps = 17/515 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L++    L D   A  LF  +       +  MI     +   +  +L ++ +M+   +
Sbjct: 240 NSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQS-GCFQEALNVFAKMQEFKM 298

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD-EDDHVSHSLITMYARCGKLDSAR 174
           +P+  T   V  +CA L  +  G SVH  V +  +D E D +  +L+ +YA  G L    
Sbjct: 299 EPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCH 358

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           KVF+ I+E+ ++SWN++IS +++ G  +EA+ LF +M+ +  +PD  +L S L +CG + 
Sbjct: 359 KVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTIS 418

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
              LG  + G+++K   + N ++ +ALIDMY KCG +  A ++F+ +  K +VTWN+MI 
Sbjct: 419 FSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMIC 477

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            ++QNG S EAI LF++M    V  DK+T + V+ AC+ +G L+ GKWV       GLR 
Sbjct: 478 GFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRK 537

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D +           CG +  A  VF+ M   + VSW+ MI+    +G+ +  + LF +M 
Sbjct: 538 DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 597

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G   +PND+TF+ +LSAC HAG V+EG+  F+ MS  FG+ PK +H++CMVDL +RAG
Sbjct: 598 --GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAG 654

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L+ A+  +  +P   +  + GALL  C+  K  D+ + + + LL+++++++G Y + S 
Sbjct: 655 DLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSN 714

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           I+A    WD   K+R++M+ KG+ K PG S I ID
Sbjct: 715 IYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 749



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 246/474 (51%), Gaps = 34/474 (7%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNE 83
           + L ++C ++ T+ Q+H  + I  + +      ++I+    +  F  +  +F    +P+ 
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDS 64

Query: 84  YAFNVMIRGLTTAWQKY-SHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           + + V+I+     W  +   ++ LY++M  +   +  NF +P V  +C+    L+ G  V
Sbjct: 65  FMWGVLIK--CYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V K G + D  V  SL+ MY     LD A K FD +  RD+V+W+S++  + + G A
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            E +++F +M  E   PD +T++SV  +C +LG L LG+ V G+VV+ +++ N  + ++L
Sbjct: 183 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSL 242

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MYGK G L  A R+F+ +  +    W  MI+ Y Q+G   EA+ +F +M+   + P++
Sbjct: 243 IVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ 302

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI------------FCGSIDDALKVFE 369
           +T++GVL ACA +G +  G+ V  +  +R +  ++              G++ D  KVFE
Sbjct: 303 VTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFE 362

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +     +SWN +IS    NG+  EALLLF +M  +G    P+  +    LSAC      
Sbjct: 363 TIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQG--LMPDSYSLASSLSACGTISFS 420

Query: 430 DEGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEAWDFVERMPEK 478
             G ++        G I K+ ++     + ++D+YA+ G +  A    E++ EK
Sbjct: 421 QLGAQI-------HGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEK 467


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 194/546 (35%), Positives = 302/546 (55%), Gaps = 21/546 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQIS--R 80
           LLS+L +  +    QQ+H +++I+  Q    L   +    I     ++A+  F +I   +
Sbjct: 10  LLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWK 69

Query: 81  PNEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            N +++N ++ G + +    YS  L LY +M+R     D+F   F   +C  L  L +G+
Sbjct: 70  RNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGM 129

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H    K GLD+DD+V+ SL+ MYA+ G ++SA+KVFDE+  R+ V W  ++ GY K  
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYS 189

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMG 258
              E   LF  MR+     D +TL+ ++ +CG++     GK V G  ++   +D + Y+ 
Sbjct: 190 KDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLE 249

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +++IDMY KC  L  AR++F+  V ++VV W  +I+ +A+   + EAI LF +M    + 
Sbjct: 250 ASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESIL 309

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P+  TL  +L +C+S+G+L  GK V  Y  + G+  D             CG+I  A KV
Sbjct: 310 PNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKV 369

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ MP  N +SW++MI+A   NG   EAL  F+ M  +     PN VTF+ +LSAC H+G
Sbjct: 370 FDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLV--PNSVTFVSLLSACSHSG 427

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            V EG + F+ M+  +GL+P+ EHY+CMVDL  RAG + EA  F++ MP K      GAL
Sbjct: 428 NVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+  K  D++  + + LL +E   S  YV+ S I+A+  MW+    +R  M  KG  
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLLSNIYADAGMWEMVNCVRHKMGIKGYR 547

Query: 548 KTPGCS 553
           K  G S
Sbjct: 548 KPMGLS 553


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/442 (38%), Positives = 263/442 (59%), Gaps = 13/442 (2%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA   A+    + H  + +I L+ D  + + LI  Y++CG ++ AR+VFD + ER LVSW
Sbjct: 71  CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MI  Y++     EA+++F  MR E F   E T+ SVL +CG   D +  K +    VK
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVK 190

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +DLN Y+G+AL+D+Y KCG +  A +VF++M +K  VTW++M+  Y QN    EA++L
Sbjct: 191 TCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLL 250

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           + R +   +  ++ TL  V+ AC+++ AL  GK +     + G   ++F           
Sbjct: 251 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAK 310

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CGS+ ++  +F ++   N   WN +IS  A + R  E ++LFE+M ++G    PN+VTF 
Sbjct: 311 CGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDG--MHPNEVTFS 368

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +LS C H GLV+EGRR F LM +++GL P   HYSCMVD+  RAG LSEA++ ++ +P 
Sbjct: 369 SLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPF 428

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
                + G+LL +C+  KN ++++   + L E+E  N+GN+V+ S I+A  K W++ AK 
Sbjct: 429 DPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKS 488

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R L+R+  V K  G SWI I D
Sbjct: 489 RKLLRDCDVKKVRGKSWIDIKD 510



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 147/258 (56%), Gaps = 3/258 (1%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA-NLLALNHGVSVHS 143
           ++N MI GL T  +  S +L ++ +M+  G K   FT   V  +C  N  AL     +H 
Sbjct: 129 SWNTMI-GLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECK-KLHC 186

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K  +D + +V  +L+ +YA+CG +  A +VF+ ++++  V+W+SM++GY +    +E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+ L+ R +      ++ TL SV+ +C +L  L+ GK +   + K+    N ++ S+ +D
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG+L  +  +F  +  K++  WN +I+ +A++    E ++LF +M+  G++P+++T
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 366

Query: 324 LIGVLSACASIGALDLGK 341
              +LS C   G ++ G+
Sbjct: 367 FSSLLSVCGHTGLVEEGR 384



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 14/264 (5%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L  C   G ++  K   G +++  ++ +  + + LI+ Y KCG +  AR+VFD M+ + 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA-SIGALDLGKW-- 342
           +V+WN MI  Y +N + +EA+ +F  M+  G    + T+  VLSAC  +  AL+  K   
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 343 --------VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
                   ++ Y     L     CG I DA++VFE M   + V+W++M++    N    E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           ALLL+ R  +   +   N  T   V+ AC +   + EG+++  ++  S G        S 
Sbjct: 247 ALLLYRRAQRM--SLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASS 303

Query: 455 MVDLYARAGHLSEAWDFVERMPEK 478
            VD+YA+ G L E++     + EK
Sbjct: 304 AVDMYAKCGSLRESYIIFSEVQEK 327



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 119/227 (52%), Gaps = 3/227 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +   +   ++ M+ G     + Y  +L LY + +R+ L+ + FT   V  +C+
Sbjct: 216 AVQVFESMQDKSSVTWSSMVAGYVQN-KNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 274

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           NL AL  G  +H+ + K G   +  V+ S + MYA+CG L  +  +F E++E++L  WN+
Sbjct: 275 NLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNT 334

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKN 249
           +ISG++K    KE + LF +M+++   P+E+T  S+L  CG  G +  G ++ +      
Sbjct: 335 IISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTY 394

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
            +  N    S ++D+ G+ G L  A  +  ++  +     W +++ +
Sbjct: 395 GLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 275/472 (58%), Gaps = 17/472 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++ L+  M+  G  PD FTY  V  +C  L  L  G  +HS V ++GL  D  V  SL+ 
Sbjct: 233 AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVD 292

Query: 163 MYARC---GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA-KEAVELFGRMREEEFLP 218
           MYA+C   G +D +RKVF+++ E +++SW ++I+ Y + G   KEA+ELF +M      P
Sbjct: 293 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRP 352

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  +  SVL +CG+L D   G+ V  + VK  +     +G++LI MY + G +  AR+ F
Sbjct: 353 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 412

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  K++V++NA++  YA+N  S EA +LFN +   G+     T   +LS  ASIGA+ 
Sbjct: 413 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 472

Query: 339 LGKWVDK------YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +        Y S + + + +      CG+I+ A +VF +M   N +SW +MI+  A
Sbjct: 473 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 532

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G A  AL +F +M + G   +PN++T++ VLSAC H G++ EG++ F+ M    G++P
Sbjct: 533 KHGFATRALEMFHKMLETG--TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 590

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+CMVDL  R+G L EA +F+  MP   D +V   LLGAC+   NT++ +   +++
Sbjct: 591 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 650

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           LE E  +   Y++ S + A+   W D  K+R  M+E+ + K  GCSWI +++
Sbjct: 651 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 702



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/420 (32%), Positives = 217/420 (51%), Gaps = 24/420 (5%)

Query: 78  ISRPN-EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           +  PN E   N +IR L     +  H+      M +    PD  TY  +  SC       
Sbjct: 4   LKNPNFEPLKNRLIRQLDVG--RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQ 61

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI-RERDLVSWNSMISGY 195
            G  VH  + + GL+ D  V ++LI++Y++CG  ++AR +F+ +  +RDLVSW++M+S +
Sbjct: 62  LGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 121

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLN 254
           +      +A+  F  M E  F P+E    +V+ +C +     +G+ + GFVVK   ++ +
Sbjct: 122 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEAD 181

Query: 255 FYMGSALIDMYGK-CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             +G  LIDM+ K  G L  A +VFD M  +++VTW  MIT +AQ G + +AI LF  M+
Sbjct: 182 VCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC--------------G 359
            +G  PD+ T   VLSAC  +G L LGK +     + GL  D+                G
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIG 418
           S+DD+ KVFE MP  N +SW A+I+A   +G    EA+ LF +M    G  RPN  +F  
Sbjct: 302 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS--GHIRPNHFSFSS 359

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC +      G +++   +   G+   +   + ++ +YAR+G + +A    + + EK
Sbjct: 360 VLKACGNLSDPYTGEQVYSY-AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 418



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/504 (28%), Positives = 253/504 (50%), Gaps = 44/504 (8%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRII 63
           A+S     T+ N P  L    + LLK C   +  Q    +H +++ + ++  + +L  +I
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSI-LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLI 86

Query: 64  DL----KDFNYASLLFHQISRPNE-YAFNVMIRGL---TTAWQKYSHSLKLYYQMKRLGL 115
            L     D   A L+F  +    +  +++ M+      +  WQ    ++  +  M  LG 
Sbjct: 87  SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ----AIWTFLDMLELGF 142

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYAR-CGKLDSA 173
            P+ + +  V  +C+N      G  ++  V K G L+ D  V   LI M+ +  G L SA
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 202

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
            KVFD++ ER+LV+W  MI+ ++++G A++A++LF  M    ++PD  T  SVL +C +L
Sbjct: 203 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 262

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALVPARRVFDAMVNKDVVTWN 290
           G L LGK +   V++  + L+  +G +L+DMY KC   G++  +R+VF+ M   +V++W 
Sbjct: 263 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 322

Query: 291 AMITAYAQNG-LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           A+ITAY Q+G    EAI LF +M    + P+  +   VL AC ++     G+ V  YA +
Sbjct: 323 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 382

Query: 350 RGLRHDIFC------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            G+   + C            G ++DA K F+ +   N VS+NA++   A N ++ EA L
Sbjct: 383 LGIA-SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 441

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSC-- 454
           LF  ++  G        TF  +LS     G + +G ++   L+   +    KS    C  
Sbjct: 442 LFNEIADTGIGISA--FTFASLLSGAASIGAMGKGEQIHGRLLKGGY----KSNQCICNA 495

Query: 455 MVDLYARAGHLSEAWDFVERMPEK 478
           ++ +Y+R G++  A+     M ++
Sbjct: 496 LISMYSRCGNIEAAFQVFNEMEDR 519



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 187/345 (54%), Gaps = 17/345 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F Q+   N  ++  +I     + +    +++L+ +M    ++P++F++  V  +C NL 
Sbjct: 309 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 368

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  V+S   K+G+   + V +SLI+MYAR G+++ ARK FD + E++LVS+N+++ 
Sbjct: 369 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 428

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+K   ++EA  LF  + +        T  S+L     +G +  G+ + G ++K     
Sbjct: 429 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 488

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +ALI MY +CG +  A +VF+ M +++V++W +MIT +A++G +  A+ +F++M 
Sbjct: 489 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 548

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGL--RHDIFCGSID-------- 362
             G  P++IT + VLSAC+ +G +  G K  +    + G+  R + +   +D        
Sbjct: 549 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 608

Query: 363 -DALKVFEDMPV-TNEVSWNAMISALAFNGRA----HEALLLFER 401
            +A++    MP+  + + W  ++ A   +G      H A ++ E+
Sbjct: 609 VEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 653


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 295/559 (52%), Gaps = 35/559 (6%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQ 77
           LL EKL  L  KC +  +V QIH Q+L   + +  F+  ++I      +    A  +F+ 
Sbjct: 20  LLEEKLCDL-HKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNH 78

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +  PN + +N +IR         S     ++QM++ GL PDNFTYPF+  +C    +L  
Sbjct: 79  VPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPL 138

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEIRERDLVSWNSMISGY 195
              +H+ V K G   D  V +SLI  Y+RCG   LD A  +F  ++ERD+V+WNSMI G 
Sbjct: 139 VRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGL 198

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLN 254
            + G  + A +LF  M E     D ++  ++L      G++        F +  +M   N
Sbjct: 199 VRCGELEGACKLFDEMPER----DMVSWNTMLDGYAKAGEMD-----RAFELFERMPQRN 249

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
               S ++  Y K G +  AR +FD    K+VV W  +I  YA+ G   EA  L+ +M+ 
Sbjct: 250 IVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEE 309

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSI 361
           AG+ PD   LI +L+ACA  G L LGK +  +AS R  R            D++  CG +
Sbjct: 310 AGLRPDDGFLISILAACAESGMLGLGKRI--HASMRRWRFRCGTKVLNAFIDMYAKCGCL 367

Query: 362 DDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           D A  VF  M    +V SWN+MI   A +G   +AL LF RM  EG    P+  TF+G+L
Sbjct: 368 DAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEG--FEPDTYTFVGLL 425

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
            AC HAGLV+EGR+ F  M   +G++P+ EHY CM+DL  R GHL EA+  +  MP + +
Sbjct: 426 CACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPN 485

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
            I+LG LL AC+   + D ++ V + L ++E ++ GNY + S I+A    W + A +R  
Sbjct: 486 AIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQ 545

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M   G  K  G S I +++
Sbjct: 546 MMNTGGQKPSGASSIEVEE 564


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 195/596 (32%), Positives = 310/596 (52%), Gaps = 61/596 (10%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLL 74
           L  E++ SLL  C + +   QI+  +++        L   +          +  +++  L
Sbjct: 12  LSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSHTL 71

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL- 133
           F QI+ P+ + +N +I+  +       H   L+  M    + PD+FT+PF+  +CAN+L 
Sbjct: 72  FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLI 131

Query: 134 -ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            A   G  VH  V + G   D  V+++L+  Y   G + +A KVFDE   RD VS+N+MI
Sbjct: 132 SAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMI 191

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK--NK 250
           +G+++ G       +FG MR     PDE T V++L  C  L D  +G+ V G V +    
Sbjct: 192 NGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGC 251

Query: 251 MDLNFYMGSALIDMYGKCGALV---------------------------------PARRV 277
              N  + + L+DMY KCG LV                                  ARR+
Sbjct: 252 FGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRL 311

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD M  +DVV+W AMI+ Y+  G   EA+ LF +++  G+ PD++ ++  LSACA +GAL
Sbjct: 312 FDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGAL 371

Query: 338 DLGKWVDK-YASQ-------RGLRHDIF-----CGSIDDALKVFEDMPVTNEVS--WNAM 382
           +LG+ + + YA +       RG    +      CGSID AL VF       + +  +N++
Sbjct: 372 ELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSI 431

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           IS LA +GR   A  LFE M   G   +P+++TF+ VLSAC H GLVD G++LF+ M + 
Sbjct: 432 ISGLAHHGRGEYAKNLFEEMGLLG--LKPDNITFVAVLSACGHCGLVDFGKKLFESMFTV 489

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           +G+ P+ EHY CMVDL  RAGHL EA   + +MP K + ++  ALL AC+   +  +++ 
Sbjct: 490 YGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALARV 549

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
               L+E++  +   YV+ S + ++    D++A +R  +   G+ K PG S++ ++
Sbjct: 550 ASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMN 605


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 275/472 (58%), Gaps = 17/472 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++ L+  M+  G  PD FTY  V  +C  L  L  G  +HS V ++GL  D  V  SL+ 
Sbjct: 215 AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVD 274

Query: 163 MYARC---GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA-KEAVELFGRMREEEFLP 218
           MYA+C   G +D +RKVF+++ E +++SW ++I+ Y + G   KEA+ELF +M      P
Sbjct: 275 MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRP 334

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  +  SVL +CG+L D   G+ V  + VK  +     +G++LI MY + G +  AR+ F
Sbjct: 335 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 394

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  K++V++NA++  YA+N  S EA +LFN +   G+     T   +LS  ASIGA+ 
Sbjct: 395 DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 454

Query: 339 LGKWVDK------YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +        Y S + + + +      CG+I+ A +VF +M   N +SW +MI+  A
Sbjct: 455 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 514

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G A  AL +F +M + G   +PN++T++ VLSAC H G++ EG++ F+ M    G++P
Sbjct: 515 KHGFATRALEMFHKMLETG--TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 572

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+CMVDL  R+G L EA +F+  MP   D +V   LLGAC+   NT++ +   +++
Sbjct: 573 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 632

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           LE E  +   Y++ S + A+   W D  K+R  M+E+ + K  GCSWI +++
Sbjct: 633 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVEN 684



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 208/398 (52%), Gaps = 21/398 (5%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           +  H+      M +    PD  TY  +  SC        G  VH  + + GL+ D  V +
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 159 SLITMYARCGKLDSARKVFDEI-RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           +LI++Y++CG  ++AR +F+ +  +RDLVSW++M+S ++      +A+  F  M E  F 
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGK-CGALVPAR 275
           P+E    +V+ +C +     +G+ + GFVVK   ++ +  +G  LIDM+ K  G L  A 
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +VFD M  +++VTW  MIT +AQ G + +AI LF  M+ +G  PD+ T   VLSAC  +G
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 245

Query: 336 ALDLGKWVDKYASQRGLRHDIFC--------------GSIDDALKVFEDMPVTNEVSWNA 381
            L LGK +     + GL  D+                GS+DD+ KVFE MP  N +SW A
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 382 MISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           +I+A   +G    EA+ LF +M    G  RPN  +F  VL AC +      G +++   +
Sbjct: 306 IITAYVQSGECDKEAIELFCKMIS--GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY-A 362

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              G+   +   + ++ +YAR+G + +A    + + EK
Sbjct: 363 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 400



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 146/504 (28%), Positives = 253/504 (50%), Gaps = 44/504 (8%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRII 63
           A+S     T+ N P  L    + LLK C   +  Q    +H +++ + ++  + +L  +I
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSI-LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLI 68

Query: 64  DL----KDFNYASLLFHQISRPNE-YAFNVMIRGL---TTAWQKYSHSLKLYYQMKRLGL 115
            L     D   A L+F  +    +  +++ M+      +  WQ    ++  +  M  LG 
Sbjct: 69  SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ----AIWTFLDMLELGF 124

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYAR-CGKLDSA 173
            P+ + +  V  +C+N      G  ++  V K G L+ D  V   LI M+ +  G L SA
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
            KVFD++ ER+LV+W  MI+ ++++G A++A++LF  M    ++PD  T  SVL +C +L
Sbjct: 185 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 244

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---GALVPARRVFDAMVNKDVVTWN 290
           G L LGK +   V++  + L+  +G +L+DMY KC   G++  +R+VF+ M   +V++W 
Sbjct: 245 GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWT 304

Query: 291 AMITAYAQNG-LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           A+ITAY Q+G    EAI LF +M    + P+  +   VL AC ++     G+ V  YA +
Sbjct: 305 AIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK 364

Query: 350 RGLRHDIFC------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            G+   + C            G ++DA K F+ +   N VS+NA++   A N ++ EA L
Sbjct: 365 LGIA-SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 423

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSC-- 454
           LF  ++  G        TF  +LS     G + +G ++   L+   +    KS    C  
Sbjct: 424 LFNEIADTGIGISA--FTFASLLSGAASIGAMGKGEQIHGRLLKGGY----KSNQCICNA 477

Query: 455 MVDLYARAGHLSEAWDFVERMPEK 478
           ++ +Y+R G++  A+     M ++
Sbjct: 478 LISMYSRCGNIEAAFQVFNEMEDR 501



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 187/345 (54%), Gaps = 17/345 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F Q+   N  ++  +I     + +    +++L+ +M    ++P++F++  V  +C NL 
Sbjct: 291 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLS 350

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  V+S   K+G+   + V +SLI+MYAR G+++ ARK FD + E++LVS+N+++ 
Sbjct: 351 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 410

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY+K   ++EA  LF  + +        T  S+L     +G +  G+ + G ++K     
Sbjct: 411 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKS 470

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +ALI MY +CG +  A +VF+ M +++V++W +MIT +A++G +  A+ +F++M 
Sbjct: 471 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKML 530

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGL--RHDIFCGSID-------- 362
             G  P++IT + VLSAC+ +G +  G K  +    + G+  R + +   +D        
Sbjct: 531 ETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLL 590

Query: 363 -DALKVFEDMPV-TNEVSWNAMISALAFNGRA----HEALLLFER 401
            +A++    MP+  + + W  ++ A   +G      H A ++ E+
Sbjct: 591 VEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 635



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 20/297 (6%)

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           +G    A      M ++   PD  T   +L SC    +  LGK V   ++++ ++L+  +
Sbjct: 4   VGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 63

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            + LI +Y KCG    AR +F+ M NK D+V+W+AM++ +A N +  +AI  F  M   G
Sbjct: 64  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-------------GSIDD 363
             P++     V+ AC++     +G+ +  +  + G      C             G +  
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A KVF+ MP  N V+W  MI+  A  G A +A+ LF  M   G    P+  T+  VLSAC
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV--PDRFTYSSVLSAC 241

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA---GHLSEAWDFVERMPE 477
              GL+  G++L   +    GL         +VD+YA+    G + ++    E+MPE
Sbjct: 242 TELGLLALGKQLHSRV-IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 297


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/478 (37%), Positives = 265/478 (55%), Gaps = 21/478 (4%)

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIG 149
           R LT++   + H+L+++  +      P + T P    S + L   L  G  +H+   K+ 
Sbjct: 502 RALTSS-ALHLHALRVHCLLP----NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLP 556

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
              + HV  SL+++YA+CG L  A++VFDE+     V W ++I+ Y   G  +EAV +  
Sbjct: 557 SHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVAR 616

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
                   PD  T V VL +C  + DL  G+ V     +  +  + ++ +A +D+Y KCG
Sbjct: 617 NAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCG 676

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            +  AR VFD M +KD V W AM+  YA NG   EA+ LF  M+  G+ PD   + G LS
Sbjct: 677 EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 736

Query: 330 ACASIGALDLGK-------WVDKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEV 377
           AC  +GALDLG+       W D++     L   +      CGS  +A  VF+ M   + +
Sbjct: 737 ACTRLGALDLGRQAIRMVDW-DEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 795

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
            WNAMI  L   G    A  L  +M K G   + ND TFIG+L +C H GL+ +GRR F 
Sbjct: 796 VWNAMILGLGMTGHEKIAFALVGQMEKSG--VKLNDNTFIGLLCSCTHTGLIQDGRRYFH 853

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
            M+  + + P+ EHY CMVDL +RAG L EA   V+ MP   + ++LGALLG C+  +NT
Sbjct: 854 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 913

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++++ V++ L+ +E  NSGNYV+ S I++N   W+D+AK+R  M+ KGV K P CSW+
Sbjct: 914 ELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWV 971


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 270/468 (57%), Gaps = 13/468 (2%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           ++  SL+L+ +M+ +G  P++FT+  V  +C  L A + G SVH  V K   + D +V  
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            L+ +Y + G  +   +VF+E+ + D++ W+ MIS Y++   ++EAVELFG+MR    LP
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           ++ T  SVL SC  + +L LGK V   V+K  +D N ++ +AL+D+Y KCG L  + ++F
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF 301

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             + N++ VTWN MI  Y Q+G  ++A+ L+  M    V   ++T   VL ACAS+ A++
Sbjct: 302 MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAME 361

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           LG  +   + +     D+            CGSI +A  VF+ +   +E+SWNAMIS  +
Sbjct: 362 LGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYS 421

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   EAL  F+ M +      PN +TF+ +LSAC +AGL+D G+  F  M   +G+ P
Sbjct: 422 MHGLVGEALKAFQMMQET--ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEP 479

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             EHY+CMV L  R+GHL +A   +E +P + +  V  ALLGAC    + D+     Q +
Sbjct: 480 CMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQI 539

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           L+I+  +   +V+ S I+A  + W+  A +R  M+ KGV K PG SWI
Sbjct: 540 LQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWI 587



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 234/448 (52%), Gaps = 30/448 (6%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP-----FVFISCANLLALN 136
           N  +F  +I+G   ++Q     + L+ ++ R G + + F +       V + CA L    
Sbjct: 5   NTVSFVTLIQGYVQSFQ-LDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL---- 59

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
              S+H+ ++K+G + +  V  +LI  YA CG ++SAR+ FD I  +D+VSW  M++ Y+
Sbjct: 60  -AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +    +++++LF  MR   F P+  T   VL +C  L    +GK V G V+K   +++ Y
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G  L+D+Y K G      RVF+ M   DV+ W+ MI+ YAQ+  S EA+ LF +M+ A 
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           V P++ T   VL +CASI  L LGK V  +  + GL  ++F           CG +D+++
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K+F ++P  NEV+WN MI     +G   +AL L++ M +     + ++VT+  VL AC  
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLE--CQVQASEVTYSSVLRACAS 356

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
              ++ G ++  L   S   I   +    + ++D+YA+ G +  A    + + E+ DEI 
Sbjct: 357 LAAMELGTQIHSL---SLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSER-DEIS 412

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIE 511
             A++           + +  Q++ E E
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQMMQETE 440



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 191/337 (56%), Gaps = 16/337 (4%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D N    +F ++ + +   ++ MI     + Q    +++L+ QM+R  + P+ FT+  V 
Sbjct: 192 DANDVLRVFEEMPKHDVIPWSFMISRYAQSNQS-REAVELFGQMRRAFVLPNQFTFASVL 250

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SCA++  L  G  VH  V K+GLD +  VS++L+ +YA+CG+LD++ K+F E+  R+ V
Sbjct: 251 QSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEV 310

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +WN+MI GY + G   +A+ L+  M E +    E+T  SVL +C  L  + LG  +    
Sbjct: 311 TWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLS 370

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K   D +  +G+ALIDMY KCG++  AR VFD +  +D ++WNAMI+ Y+ +GL  EA+
Sbjct: 371 LKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEAL 430

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHDIFC--- 358
             F  M+     P+K+T + +LSAC++ G LD+G+      V  Y  +  + H   C   
Sbjct: 431 KAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEH-YTCMVW 489

Query: 359 -----GSIDDALKVFEDMPVTNEVS-WNAMISALAFN 389
                G +D A+K+ E++P+   V  W A++ A   +
Sbjct: 490 LLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIH 526



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 15/345 (4%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R+ VS+ ++I GY +     E V+LF R+  E    +     ++L     +    L   
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +   + K   + N ++G+ALID Y  CG++  AR+ FDA+  KD+V+W  M+  YA+N  
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC--- 358
             +++ LF  M+  G NP+  T  GVL AC  + A  +GK V     +     D++    
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 359 --------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                   G  +D L+VFE+MP  + + W+ MIS  A + ++ EA+ LF +M +      
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRR--AFVL 240

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN  TF  VL +C     +  G+++        GL       + ++D+YA+ G L  +  
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQV-HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
               +P + +E+    ++    +  + D +  + + +LE +   S
Sbjct: 300 LFMELPNR-NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQAS 343



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M +++ V++  +I  Y Q+   +E + LF+R+   G   +      +L    S+   +L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
             +     + G   + F           CGS++ A + F+ +   + VSW  M++  A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
            R  ++L LF  M   G    PN  TF GVL AC+       G   F +  S  G + K+
Sbjct: 121 DRFQDSLQLFAEMRMVG--FNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVLKT 171

Query: 450 EHY------SCMVDLYARAGHLSEAWDFVERMPE 477
            +         ++DLY + G  ++     E MP+
Sbjct: 172 CYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPK 205


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 299/563 (53%), Gaps = 55/563 (9%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF----------------- 68
           KL+SL   C   K  +++   M    +   NF++     + DF                 
Sbjct: 139 KLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 69  ---NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
                AS LF ++   +  ++N MI G  +        L++Y QM  LG+  D  T   V
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLT-ERGLEIYKQMMYLGIDVDLATIISV 257

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            + CAN   L+ G +VHS   K   +   + S++L+ MY++CG LD A +VF+++ ER++
Sbjct: 258 LVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 317

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW SMI+GY++ G +  A+ L  +M +E    D +   S+L +C   G L  GK V  +
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY 377

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           +  N M+ N ++ +AL+DMY KCG++  A  VF  MV KD+++WN MI            
Sbjct: 378 IKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI------------ 425

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD---------- 355
                      + PD  T+  +L ACAS+ AL+ GK +  Y  + G   D          
Sbjct: 426 ---------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 356 -IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
            + CG +  A  +F+ +P  + VSW  MIS    +G  +EA+  F  M   G    P++V
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAG--IEPDEV 534

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           +FI +L AC H+GL+++G R F +M + F + PK EHY+CMVDL +R G+LS+A++F+E 
Sbjct: 535 SFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIET 594

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           +P   D  + GALL  C+   + +++++V + + E+E  N+G YV+ + I+A  + W++ 
Sbjct: 595 LPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEV 654

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
            +MR  + +KG+ K PGCSWI I
Sbjct: 655 KRMREKIGKKGLRKNPGCSWIEI 677



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 180/420 (42%), Gaps = 86/420 (20%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  V   CA   +L  G  VHS +    +  D+ +   L+++YA CG L   R+VFD +
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE------------------------- 215
            ++++  WN M+S Y+K+G  KE++ LF  M E+                          
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 216 -----------------------FLPDEITLVS---VLGSCGDLGDLVLGKWVEGFVVKN 249
                                  +L  ++ L +   VL  C + G L LGK V    +K+
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +      + L+DMY KCG L  A RVF+ M  ++VV+W +MI  Y ++G S+ AI L 
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M+  GV  D +    +L ACA  G+LD GK V  Y     +  ++F           C
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKC 400

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS+D A  VF  M V + +SWN MI                       G  +P+  T   
Sbjct: 401 GSMDGANSVFSTMVVKDIISWNTMI-----------------------GELKPDSRTMAC 437

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC     ++ G+ +   +  + G        + +VDLY + G L  A    + +P K
Sbjct: 438 ILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 165/380 (43%), Gaps = 72/380 (18%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R +  +N+ I  + ++G  + A+EL    ++ E   +  T  SVL  C     L  GK 
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSEL--ETKTYSSVLQLCAGSKSLTDGKK 120

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
           V   +  N + ++  +G  L+ +Y  CG L   RRVFD M                    
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 282 -------------------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                                           ++DV++WN+MI+ Y  NGL+   + ++ 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYK 240

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M Y G++ D  T+I VL  CA+ G L LGK V   A +      I            CG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D AL+VFE M   N VSW +MI+    +GR+  A+ L ++M KEG   + + V    +
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG--VKLDVVATTSI 358

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPE 477
           L AC  +G +D G+ + D + ++     +S  + C  ++D+Y + G +  A      M  
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANN---MESNLFVCNALMDMYTKCGSMDGANSVFSTMVV 415

Query: 478 KVDEIVLGALLGACQKQKNT 497
           K D I    ++G  +    T
Sbjct: 416 K-DIISWNTMIGELKPDSRT 434


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 192/577 (33%), Positives = 303/577 (52%), Gaps = 69/577 (11%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           + +K+L +L+ C + + ++Q H Q+ I+ +Q  +F+L ++I +                 
Sbjct: 1   MEQKMLRILQHCKNIRELKQTHLQIFIHGLQHSDFMLPKLITVSS--------------- 45

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             AFN++       +  +  +L++Y +MK L ++ ++FT+ F+        AL  G  +H
Sbjct: 46  --AFNLL------DYATHKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIH 97

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
             + K+G      V +SL+  YA C + L SA +VF+E+ ERD++SWNSMIS Y   G  
Sbjct: 98  GEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEI 157

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-EGFVVKNKMDLN------ 254
           + A+ L  +M E       +T  SV+      G++ L   V E   ++N++  N      
Sbjct: 158 QSAIGLLDKMPERNI----VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGY 213

Query: 255 ------------FYMG--------SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
                       FY          +A+I  Y   G L  A  +F+ M  K+VV+WNAMI+
Sbjct: 214 VRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMIS 273

Query: 295 AYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            Y  N   ++A+ +F+ M   G   PD+ TLI +LSACA +G+L+ GKW++ Y  +  L 
Sbjct: 274 GYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLH 333

Query: 354 H---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                     D+F  CG +++A +VF  M     ++W  M+S LA NG+  EA+ LF++M
Sbjct: 334 LSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKM 393

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
             EG   +P+DV FI VLSAC H GLV+EG+R+FD M   FG+ P+ EHY CMVDL  RA
Sbjct: 394 CLEG--TKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRA 451

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L EA  F  RM  K + ++   LL  C+   N D+ + V + +++ E SN     + S
Sbjct: 452 GKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVS 511

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            + A+   W+D    R  MR++ + K PGCS I + +
Sbjct: 512 NLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGN 548


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 201/570 (35%), Positives = 306/570 (53%), Gaps = 33/570 (5%)

Query: 12  LAFTELNDPSLLREKLLSLL-KKCPSTKTVQQIHTQMLINFIQKPNF-----LLIRIIDL 65
           L F  L  PS       +LL  KC S       + Q   +  Q PN      L+      
Sbjct: 34  LYFKSLIPPSTYLSNHFTLLYSKCGSLH-----NAQTSFDLTQYPNVFSYNTLINAYAKH 88

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
              + A  +F +I +P+  ++N +I       +    +L+L+ +++ L    D FT   V
Sbjct: 89  SLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRP-ALRLFAEVRELRFGLDGFTLSGV 147

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--- 182
            I+C + + L     +H  V   G D    V+++++  Y+R G L+ AR+VF E+ E   
Sbjct: 148 IIACGDDVGLVR--QLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGG 205

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           RD VSWN+MI    +     EAVELF  M       D  T+ SVL +   + DLV G   
Sbjct: 206 RDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQF 265

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYAQ-NG 300
            G ++K+    N ++GS LID+Y KC G +V  R+VF+ +   D+V WN MI+ ++Q   
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYED 325

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
           LS + I  F  M++ G +PD  + + V SAC+++ +  +GK V   A +  + ++     
Sbjct: 326 LSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVN 385

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG++ DA +VF+ MP  N VS N+MI+  A +G   E+L LFE M ++  A
Sbjct: 386 NALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIA 445

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             PN +TFI VLSACVH G V+EG++ F++M   F + P++EHYSCM+DL  RAG L EA
Sbjct: 446 --PNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEA 503

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
              +E MP     I    LLGAC+K  N +++ +     L++E  N+  YV+ S ++A+ 
Sbjct: 504 ERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASA 563

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             W+++A ++ LMRE+GV K PGCSWI ID
Sbjct: 564 ARWEEAATVKRLMRERGVKKKPGCSWIEID 593



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 215/479 (44%), Gaps = 60/479 (12%)

Query: 121 TYPFVFISCANLLA-------LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS- 172
           T+P    +  NLL        L  G ++H+  FK  +    ++S+    +Y++CG L + 
Sbjct: 4   TFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNA 63

Query: 173 ------------------------------ARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
                                         AR+VFDEI + D+VS+N++I+ Y+  G  +
Sbjct: 64  QTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECR 123

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            A+ LF  +RE  F  D  TL  V+ +CGD  D+ L + +  FVV    D    + +A++
Sbjct: 124 PALRLFAEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVL 181

Query: 263 DMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
             Y + G L  ARRVF  M     +D V+WNAMI A  Q+    EA+ LF  M   G+  
Sbjct: 182 ACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKV 241

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--ID----------DALKV 367
           D  T+  VL+A   +  L  G        + G   +   GS  ID          +  KV
Sbjct: 242 DMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKV 301

Query: 368 FEDMPVTNEVSWNAMISALA-FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           FE++   + V WN MIS  + +   + + +  F  M   G    P+D +F+ V SAC + 
Sbjct: 302 FEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNG--FHPDDCSFVCVTSACSNL 359

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
                G+++  L   S     +    + +V +Y++ G++ +A    + MPE  + + L +
Sbjct: 360 SSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEH-NMVSLNS 418

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           ++    +      S R+ +L+L+ + + N+  ++       +    ++  K   +M+E+
Sbjct: 419 MIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKER 477


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 179/478 (37%), Positives = 265/478 (55%), Gaps = 21/478 (4%)

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIG 149
           R LT++   + H+L+++  +      P + T P    S + L   L  G  +H+   K+ 
Sbjct: 526 RALTSS-ALHLHALRVHCLLP----NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLP 580

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
              + HV  SL+++YA+CG L  A++VFDE+     V W ++I+ Y   G  +EAV +  
Sbjct: 581 SHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVAR 640

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
                   PD  T V VL +C  + DL  G+ V     +  +  + ++ +A +D+Y KCG
Sbjct: 641 NAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCG 700

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            +  AR VFD M +KD V W AM+  YA NG   EA+ LF  M+  G+ PD   + G LS
Sbjct: 701 EMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS 760

Query: 330 ACASIGALDLGK-------WVDKYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEV 377
           AC  +GALDLG+       W D++     L   +      CGS  +A  VF+ M   + +
Sbjct: 761 ACTRLGALDLGRQAIRMVDW-DEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDII 819

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
            WNAMI  L   G    A  L  +M K G   + ND TFIG+L +C H GL+ +GRR F 
Sbjct: 820 VWNAMILGLGMTGHEKIAFALVGQMEKSG--VKLNDNTFIGLLCSCTHTGLIQDGRRYFH 877

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
            M+  + + P+ EHY CMVDL +RAG L EA   V+ MP   + ++LGALLG C+  +NT
Sbjct: 878 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 937

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++++ V++ L+ +E  NSGNYV+ S I++N   W+D+AK+R  M+ KGV K P CSW+
Sbjct: 938 ELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWV 995


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 282/505 (55%), Gaps = 16/505 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           D   A  +F +I   N  ++  M+ G L   + +    L L+ +M+   + P  +T   V
Sbjct: 172 DLENARKVFDRILGRNVVSWTSMLSGCLQNGFAE--EGLALFNEMREERVLPSEYTMASV 229

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            ++C  L +L+ G  VH SV K G+  +  ++ +++ MY +CG+++ AR++FDE+   DL
Sbjct: 230 LMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDL 289

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           V W +MI GY++ G   +A+ LF   +    +P+ +T+ +VL +   L +L LG+ +   
Sbjct: 290 VLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAM 349

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            VK  +  N  + +AL+DMY KC AL  A  +F  + NKDVVTWN++I  Y +N + NEA
Sbjct: 350 SVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEA 409

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           +MLF++M+  G +PD I+++  LSAC  +G L +GK    YA +R    +++        
Sbjct: 410 LMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNL 469

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              C  +  A +VF +M   N V+W AMI      G +  ++ L  +M K+    +PN+V
Sbjct: 470 YNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDN--IQPNEV 527

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
            F  +LS C H G+V  G+  FD M+  F + P  +HY+CMVD+ ARAG+L EA +F+++
Sbjct: 528 VFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQK 587

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP   D  + GA L  C+     +  +  +  ++ +       YV+ S ++ +   WD S
Sbjct: 588 MPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKS 647

Query: 535 AKMRALMREKGVSKTPGCSWIGIDD 559
             +R LM+E+G+ K PGCS +G+++
Sbjct: 648 LAIRRLMQERGLVKLPGCSSVGLEN 672



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 256/497 (51%), Gaps = 23/497 (4%)

Query: 30  LLKKCPSTKTVQQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYA 85
           LL  C +  +++ +H ++L    +  ++    LL     L D   A  +  +  RP+ Y 
Sbjct: 29  LLPACATLPSLRALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYT 88

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP--DNFTYPFVFISCANLLALNHGVSVHS 143
           + V + G   A  +++ +L L+  M+R   +   D         +        +G  +H 
Sbjct: 89  YRVAL-GWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHC 147

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
           +  K G   D  V + L+ MYA+ G L++ARKVFD I  R++VSW SM+SG  + G+A+E
Sbjct: 148 NAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEE 206

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            + LF  MREE  LP E T+ SVL +C  LG L  G+WV G V+K+ M  N ++ +A++D
Sbjct: 207 GLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLD 266

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG +  ARR+FD +   D+V W  MI  Y QNG   +A++LF+  K+  + P+ +T
Sbjct: 267 MYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVT 326

Query: 324 LIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF----------CGSIDDALKVFEDMP 372
           +  VLSA A +  L LG+ +   + +   + +D+           C ++ +A  +F  + 
Sbjct: 327 IATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRIS 386

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + V+WN++I+    N   +EAL+LF +M  +G +  P+ ++ +  LSACV  G +  G
Sbjct: 387 NKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSS--PDAISIVNALSACVCLGDLLIG 444

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
            + F   +     +      + +++LY +   L  A      M E+ + +  GA++G   
Sbjct: 445 -KCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSER-NSVTWGAMIGGYG 502

Query: 493 KQKNTDVSQRVMQLLLE 509
            Q ++  S  ++  +L+
Sbjct: 503 MQGDSAGSIDLLNKMLK 519


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 281/551 (50%), Gaps = 61/551 (11%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII-------DLKDFNYASLLFHQIS 79
           +LS  ++  S   +QQ H  ML   +    F   +++       + K  +YA  + ++I 
Sbjct: 12  ILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIE 71

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            PN +  N +IR    +      +L ++ +M    + PD +++ FV  +CA       G 
Sbjct: 72  SPNGFTHNSVIRAYANS-STPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGR 130

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H    K  L  D  V ++LI +Y R G  + ARKV D +  RD VSWNS++S Y   G
Sbjct: 131 QIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKG 190

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +EA  LF  M E                                  +N    NF    
Sbjct: 191 LVEEARALFDEMEE----------------------------------RNVESWNF---- 212

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVN 318
            +I  Y   G +  AR VFD+M  KDVV+WNAM+TAYA  G  NE + +FN M   +   
Sbjct: 213 -MISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAER 271

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD  TL+ VLSACAS+G+L  G+WV  Y  + G+  + F           CG ID AL+V
Sbjct: 272 PDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEV 331

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F D    +  +WN++I+ L+ +G   +AL +F  M  EG   +PN +TFIGVLSAC H G
Sbjct: 332 FRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEG--FKPNGITFIGVLSACNHVG 389

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           L+D+ R+LF++M+S +G+ P  EHY CMVDL  R G   EA + V  +P     I+L +L
Sbjct: 390 LLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESL 449

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LGAC++    + ++R+   LLE     S  YV  S ++A+   WD++ ++R  MR + V 
Sbjct: 450 LGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVK 509

Query: 548 KTPGCSWIGID 558
           K PGCS I +D
Sbjct: 510 KNPGCSMIEVD 520


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 284/508 (55%), Gaps = 24/508 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N  +L      R + Y++N +I  L         SL+ +  M++L +KP+  T+P    S
Sbjct: 33  NLTTLFNKYFDRTDVYSWNSLIAELARGGDS-CESLRAFSWMRKLDIKPNRSTFPCAIKS 91

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C+ L  LN G   H      G + D  VS +LI MY++CGKL +AR +FDEI  R++V+W
Sbjct: 92  CSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTW 151

Query: 189 NSMISGYSKMGYAKEAVELF---------GRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
            S+I+GY +   A EA+ +F         G   E     D + ++SVL +C  + +  + 
Sbjct: 152 TSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVS 211

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + V G  +K  +D    + + L+D Y KCG +  +R+VFD M  KDVV+WN+MI  YAQN
Sbjct: 212 EGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQN 271

Query: 300 GLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           GLS +A  +F+ M K  G   +++TL  +L ACA  GAL +G  +     + G  +++  
Sbjct: 272 GLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIM 331

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG  + A   F+ M   N  SW AMI+    +G A EAL +F +M   G 
Sbjct: 332 ATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAG- 390

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             +PN +TFI VL+AC HAG ++EG R F+ MS  + + P  EHY CMVDL  RAG++ E
Sbjct: 391 -VKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKE 449

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A++ ++ M  + D ++ G+LL AC+  K+ ++++   + L +++ SN G YV+ + I+A+
Sbjct: 450 AYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYAD 509

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWI 555
              W D  +MR L++++G+ K PG S +
Sbjct: 510 AGRWKDVERMRILVKDRGLVKPPGYSLV 537


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 285/496 (57%), Gaps = 14/496 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ +   N   +N MI G          SL L+ +M   G+ PD+ T+     S     
Sbjct: 130 LFNTMPDTNVVTWNGMIAGFVQNGFMDEASL-LFSEMISAGVSPDSITFASFLPSVTESA 188

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           +L  G  +H  + + G+  D  +  +LI +Y +C  +  A K+F +    D+V   ++IS
Sbjct: 189 SLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIIS 248

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY   G   +A+E+F  + EE+  P+ +TL SVL +C  L  L LGK +   ++K+ +D 
Sbjct: 249 GYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDE 308

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             ++GSA++DMY KCG L  A ++F  M  KD V WNA+IT  +QNG   EAI LF +M 
Sbjct: 309 RRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMG 368

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             G++ D +++   LSACA++ AL  GK +  +  +     ++F           CG++ 
Sbjct: 369 REGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLS 428

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  VF+ M   NEVSWN++I+A   +G    +L LF +M ++G   +P+ VTF+ +LSA
Sbjct: 429 VARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDG--IQPDHVTFLTILSA 486

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAG VD+G + F  M+  +G+  + EHY+C+VDL+ RAG L+EA++ ++ MP   D+ 
Sbjct: 487 CGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDG 546

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V G LLGAC+   N ++++   + LL+++  NSG YV+ S + A+   W    K+R+LM+
Sbjct: 547 VWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMK 606

Query: 543 EKGVSKTPGCSWIGID 558
           ++GV K PG SWI ++
Sbjct: 607 KRGVQKVPGYSWIEVN 622



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 242/453 (53%), Gaps = 22/453 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +   +NVM+ G     +  S ++K++  M+    KP++ T+  V   CA
Sbjct: 26  ARRLFDKMPNKDCVLWNVMLNGFVKCGEPNS-AVKVFEDMRNCQTKPNSITFASVLSICA 84

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +      G  +H  V   G   D  V+++L+ MY++ G+L  A K+F+ + + ++V+WN 
Sbjct: 85  SEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNG 144

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+G+ + G+  EA  LF  M      PD IT  S L S  +   L  GK + G+++++ 
Sbjct: 145 MIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHG 204

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ ++ SALID+Y KC  +  A ++F    N D+V   A+I+ Y  NGL+N+A+ +F 
Sbjct: 205 IALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFR 264

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RH------DIF--CG 359
            +    ++P+ +TL  VL ACA +  L+LGK +     + GL   RH      D++  CG
Sbjct: 265 WLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCG 324

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D A ++F  MP  + V WNA+I+  + NG+  EA+ LF +M +EG +   + V+    
Sbjct: 325 RLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSY--DCVSISAA 382

Query: 420 LSACVHAGLVDEGRRLFDLM-SSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMP 476
           LSAC +   +  G+ +   M   +F     SE +  S ++D+Y + G+LS A    + M 
Sbjct: 383 LSACANLPALHHGKAIHSFMIKGAF----DSEVFAESALIDMYGKCGNLSVARCVFDMMR 438

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EK +E+   +++ A     + +VS  +   +LE
Sbjct: 439 EK-NEVSWNSIIAAYGSHGHLEVSLALFHKMLE 470



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 205/392 (52%), Gaps = 18/392 (4%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+     L  + +  S K  ++IH  +L + I    FL   +ID+    +D   A  +F 
Sbjct: 174 SITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFK 233

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q +  +      +I G        + +L+++  +    + P+  T   V  +CA L  LN
Sbjct: 234 QSTNVDIVVCTAIISGYVLNGLN-NDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLN 292

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H+++ K GLDE  HV  +++ MYA+CG+LD A ++F  + E+D V WN++I+  S
Sbjct: 293 LGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCS 352

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  +EA++LF +M  E    D +++ + L +C +L  L  GK +  F++K   D   +
Sbjct: 353 QNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVF 412

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             SALIDMYGKCG L  AR VFD M  K+ V+WN++I AY  +G    ++ LF++M   G
Sbjct: 413 AESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDG 472

Query: 317 VNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDA 364
           + PD +T + +LSAC   G +D G        ++Y     + H     D+F   G +++A
Sbjct: 473 IQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEA 532

Query: 365 LKVFEDMPVT-NEVSWNAMISALAFNGRAHEA 395
            +  ++MP + ++  W  ++ A   +G    A
Sbjct: 533 FETIKNMPFSPDDGVWGTLLGACRVHGNVELA 564



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 181/358 (50%), Gaps = 15/358 (4%)

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
           +G + D+ V  SLI +YA  G ++ AR++FD++  +D V WN M++G+ K G    AV++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           F  MR  +  P+ IT  SVL  C        G  + G V+      +  + +AL+ MY K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
            G L  A ++F+ M + +VVTWN MI  + QNG  +EA +LF+ M  AGV+PD IT    
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE 376
           L +     +L  GK +  Y  + G+  D+F           C  +  A K+F+     + 
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           V   A+IS    NG  ++AL +F  + +E     PN VT   VL AC     ++ G+ L 
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEE--KMSPNAVTLASVLPACAGLATLNLGKELH 298

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
             +    GL  +    S ++D+YA+ G L  A+    RMPEK D +   A++  C + 
Sbjct: 299 ANILKH-GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQN 354


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/471 (38%), Positives = 274/471 (58%), Gaps = 19/471 (4%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L L+ +M+   +  + FT   +  +C  L  L+ G  VH  V K G+  + +++ SL+ M
Sbjct: 219 LTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNM 278

Query: 164 YARCGKLDSARKVFDEIR----ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           Y +CG +  A KVFDE      +RDLVSW +MI GYS+ GY   A+ELF   +    LP+
Sbjct: 279 YVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPN 338

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
            +T+ S+L SC  LG+ V+GK + G  VK  +D +  + +AL+DMY KCG +  AR VF+
Sbjct: 339 SVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFE 397

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
           AM+ KDVV+WN++I+ + Q+G + EA+ LF RM     +PD +T++G+LSACAS+G L L
Sbjct: 398 AMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHL 457

Query: 340 GKWVDKYASQRGLR-HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           G  V   A + GL    I+           CG    A  VF+ M   N V+W AMI    
Sbjct: 458 GCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYG 517

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
             G  + +L LF  M +E     PN+V F  +L+AC H+G+V EG RLF+LM      +P
Sbjct: 518 MQGDGNGSLTLFRDMLEE--LVEPNEVVFTTILAACSHSGMVGEGSRLFNLMCGELNFVP 575

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             +HY+CMVD+ ARAG+L EA DF+ERMP +    V GA L  C      ++    ++ +
Sbjct: 576 SMKHYACMVDMLARAGNLEEALDFIERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKM 635

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           LE+    +  YV+ S ++A+   W    ++R +++++G++K PGCS + +D
Sbjct: 636 LELHPDEACYYVLVSNLYASDGRWGMVKQVREMIKQRGLNKVPGCSSVEMD 686



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 164/503 (32%), Positives = 255/503 (50%), Gaps = 30/503 (5%)

Query: 30  LLKKCPSTKTVQQIHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYA 85
           L + C +  +++ +H   LI    N +     LL          +A  +F+ +   + Y 
Sbjct: 39  LSRLCTNLPSLKTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYC 98

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP---DNFTYPFVFISCANLLALNHGVSVH 142
           F VMIR            +   Y++ RL L P   D   +  VF SCA           H
Sbjct: 99  FKVMIRAYFL--NDTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITH 156

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD-LVSWNSMISGYSKMGYA 201
               K  L  D  V   L+  YA+  ++D A + FDEI E D +VSW SMI  Y +   A
Sbjct: 157 CHFVK-SLPSDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCA 215

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +E + LF RMRE     +E T+ S++ +C  L  L  GKWV GFV+KN + +N Y+ ++L
Sbjct: 216 REGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSL 275

Query: 262 IDMYGKCGALVPARRVFD----AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           ++MY KCG +  A +VFD    +  ++D+V+W AMI  Y+Q G  + A+ LF   K++G+
Sbjct: 276 LNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGI 335

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--------DIF--CGSIDDALKV 367
            P+ +T+  +LS+CA +G   +GK +   A + GL          D++  CG + DA  V
Sbjct: 336 LPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDDHPVRNALVDMYAKCGVVSDARCV 395

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           FE M   + VSWN++IS    +G A+EAL LF RM  E     P+ VT +G+LSAC   G
Sbjct: 396 FEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLE--LFSPDAVTVVGILSACASLG 453

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           ++  G  +  L     GL+  S +  + +++ YA+ G    A    + M EK + +  GA
Sbjct: 454 MLHLGCSVHGLALKD-GLVVSSIYVGTALLNFYAKCGDARAARMVFDSMGEK-NAVTWGA 511

Query: 487 LLGACQKQKNTDVSQRVMQLLLE 509
           ++G    Q + + S  + + +LE
Sbjct: 512 MIGGYGMQGDGNGSLTLFRDMLE 534


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/535 (34%), Positives = 297/535 (55%), Gaps = 20/535 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           Q IHT ++ +      ++   ++D+       + A  LF ++   N  ++N MI G +  
Sbjct: 72  QIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQI 131

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
                    L+  M+ +G +PD  T   +  +  +  +L    +VH+   + GLD D  V
Sbjct: 132 -GSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSV 190

Query: 157 SHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           S++ I  Y++CG+L  A+ VF  I++  R  VSWNS+I+ Y+  G   +AV+ +  +  +
Sbjct: 191 SNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCD 250

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
            F PD  T++S+L SC     L+ G  + G   +   D +  + + LI MY +CG +  A
Sbjct: 251 GFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSA 310

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
             +FD M  +  V+W AMI+ Y++ G  ++A++LFN M+  G  PD +T++ ++S C   
Sbjct: 311 TILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKT 370

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
           GAL LG W+D YAS   L+ D+            CGS++DA ++F  +P    VSW AMI
Sbjct: 371 GALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMI 430

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +A A NG   EAL LF  +S+ G    PN++TF+ VL AC H G +++GR  F +M+  +
Sbjct: 431 AACALNGEFREALDLFSLLSESG--IEPNNITFLAVLQACCHGGYLEKGRECFMMMTERY 488

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           G+ P  +HYSCM+DL  R G L EA + ++ MP K DE + GALLGAC+   N ++ + V
Sbjct: 489 GINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYV 548

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            + L E++   + ++V  + I+A++  WD+ A MR  MR   + K+PG S + ++
Sbjct: 549 SRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQVN 603



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/419 (30%), Positives = 209/419 (49%), Gaps = 18/419 (4%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N  IRG        S +L L++Q+K  GL+P+NFT+PF+  +CA L  L +   +H+ V
Sbjct: 20  WNSSIRGAVNQGNA-SKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHV 78

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K     D +V  +++ MY +CGK+D A  +FD++  R++ SWN+MI G+S++G      
Sbjct: 79  VKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVF 138

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            LF  MR     PD  T++ +  +      L   K V    ++  +D +  + +  I  Y
Sbjct: 139 NLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAY 198

Query: 266 GKCGALVPARRVFDAM--VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
            KCG L  A+ VF  +    +  V+WN++I  YA  G   +A+  +  +   G  PD  T
Sbjct: 199 SKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAST 258

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
           +I +LS+C    AL  G  +  +  Q G   DI            CG I  A  +F+ M 
Sbjct: 259 IISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMS 318

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
           +   VSW AMIS  +  GR  +AL+LF  M + G   +P+ VT + ++S C   G +  G
Sbjct: 319 IRTCVSWTAMISGYSEVGRVDDALVLFNAMEETG--EKPDIVTVLSLISGCGKTGALGLG 376

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
             + D  +S   L       + ++D+YA+ G L++A +    +P +   +   A++ AC
Sbjct: 377 HWI-DNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRT-VVSWTAMIAAC 433



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 20/299 (6%)

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           L  WNS I G    G A +A+ LF +++     P+  T   +  +C  L  L   + +  
Sbjct: 17  LTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHT 76

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            VVK+    + Y+ +A++DMY KCG +  A  +FD M  +++ +WNAMI  ++Q G  + 
Sbjct: 77  HVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDR 136

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
              LF  M+  G  PD  T+IG+  A  S  +L   K V     + GL  D         
Sbjct: 137 VFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIA 196

Query: 358 ----CGSIDDALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
               CG +  A  VF  +  T  + VSWN++I+  A  G+  +A+  ++ +  +G   +P
Sbjct: 197 AYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDG--FKP 254

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE--HYSCMVDLYARAGHLSEA 468
           +  T I +LS+C     +  G   F +    F L   S+    + ++ +Y+R G +S A
Sbjct: 255 DASTIISLLSSCQQPEALIYG---FLIHGHGFQLGCDSDISLINTLISMYSRCGDISSA 310


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 273/479 (56%), Gaps = 19/479 (3%)

Query: 93  LTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           L TA+ +  H   +L LY +M   G+  D  TY     +CA+L AL  G ++HS VF+ G
Sbjct: 315 LMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECG 374

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYAKEAVELF 208
             +   V  +L+TMYA+CG+LD+AR VF+ +R+ R++  W +MIS Y++ G+ +EA+EL+
Sbjct: 375 F-QSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELY 433

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            +M  E   P+E T  +VL +C   GDL  G  + G V  +++  N  + +AL+ MY KC
Sbjct: 434 DQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKC 493

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G+L  A+  F+A   KD+V+WNAMI AYAQ+GL  EA+ L+  M   GV PD++T+   L
Sbjct: 494 GSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSL 553

Query: 329 SACASIGALDLGKWV-DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE 376
           SACA  G+L LG+ +  +    +  R  +            CG ++ A  +FEDM   + 
Sbjct: 554 SACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDV 613

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           +SW AM SA A  G A + L L+  M   G   RPN++TF  +L  C HAGL+  G   F
Sbjct: 614 LSWTAMTSAYAQQGHADQVLDLYLEMVLHG--IRPNEITFTSILVGCSHAGLLARGVECF 671

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
             M S   ++P  EH+ CMVDL  R+G L +A   VE MP + D +    +LG+C+   +
Sbjct: 672 LEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSD 731

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            D ++R  + + E++  N+  Y + S IF    +  ++ +++  M+E G+ K PG S I
Sbjct: 732 ADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLI 790



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 224/404 (55%), Gaps = 21/404 (5%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS-- 157
           ++ +L+LY++M   G +PD  TY  V  SC+ + +L     +H+S+ +      D++S  
Sbjct: 125 WNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQ 184

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           ++L+ MY +CG ++ ARKVFD I+ RD VSW SMIS Y+  G+  EA++L+ +M  +   
Sbjct: 185 NALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQ 244

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           PD IT  S L +C  L D   GK +   +V + M+ +F +GSALI+MY +CG +  AR+ 
Sbjct: 245 PDSITFTSALLACTKLVD---GKAIHARIVSSNMESDF-VGSALINMYARCGDVSSARQA 300

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+ + NK VV W +++TAY Q     EA+ L+ RM + GV+ D +T +  L ACAS+GAL
Sbjct: 301 FEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGAL 360

Query: 338 DLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMPVTNEV-SWNAMISAL 386
             GK +     + G +  +           CG +D A  VF  +     V  W AMISA 
Sbjct: 361 KEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAY 420

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A  G   EAL L+++M  EG   RPN+ TF  VL+AC  +G ++ G ++   + +S  L 
Sbjct: 421 AQAGHTQEALELYDQMVAEG--TRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENS-ELA 477

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
                 + +V +YA+ G L  A    E    K D +   A++GA
Sbjct: 478 SNVAVQNALVTMYAKCGSLELAKSAFEASGRK-DLVSWNAMIGA 520



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 199/428 (46%), Gaps = 51/428 (11%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   C  L +L  G  VH  + + G   +  + + LI MY  CG++  AR  F    
Sbjct: 45  YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104

Query: 182 E-RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
             + +  +N M+S Y K G    A+EL+ RM EE   PD+IT   VLGSC  +G L   +
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164

Query: 241 WVEGFVVKNKMDL--NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
            +   +++    +  N  + +AL++MYGKCG++  AR+VFD + N+D V+W +MI++YA 
Sbjct: 165 EIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYAN 224

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG  +EA+ L+ +M   G+ PD IT    L AC  +  +D GK +        +  D   
Sbjct: 225 NGFCDEALDLYQQMDADGIQPDSITFTSALLACTKL--VD-GKAIHARIVSSNMESDFVG 281

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG +  A + FE +   + V W ++++A        EAL L+ RM  EG  
Sbjct: 282 SALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEG-- 339

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGR----RLF-----------------------DLMSS 441
              + VT++  L AC   G + EG+    R+F                       D   +
Sbjct: 340 VHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARA 399

Query: 442 SFGLIPKSEHYSC---MVDLYARAGHLSEAWDFVERM---PEKVDEIVLGALLGACQKQK 495
            F  + +  +  C   M+  YA+AGH  EA +  ++M     + +E     +L AC    
Sbjct: 400 VFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSG 459

Query: 496 NTDVSQRV 503
           + +   ++
Sbjct: 460 DLEAGMKI 467


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 264/469 (56%), Gaps = 14/469 (2%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+ +M+   +KP+  T   +  +CA+L  L  G S+H    K  +D D     +L++
Sbjct: 414 ALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVS 473

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+CG   +A   F+ +  RD+V+WNS+I+GY+++G    A+++F ++R     PD  T
Sbjct: 474 MYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGT 533

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM- 281
           +V V+ +C  L DL  G  + G +VK   + + ++ +ALIDMY KCG+L  A  +F+   
Sbjct: 534 MVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTD 593

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             KD VTWN +I AY QNG + EAI  F++M+    +P+ +T + VL A A + A   G 
Sbjct: 594 FTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
                  Q G   +             CG +  + K+F +M   + VSWNAM+S  A +G
Sbjct: 654 AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
               A+ LF  M +     + + V+F+ VLSAC H GLV+EGR++F  MS  + + P  E
Sbjct: 714 HGDRAIALFSLMQES--QVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLE 771

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+CMVDL  RAG   E   F++ MP + D  V GALLG+C+   N  + +  +  L+++
Sbjct: 772 HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 831

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           E  N  ++V+ S I+A    W D+ K R+ M + G+ KTPGCSW+ + +
Sbjct: 832 EPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 240/464 (51%), Gaps = 22/464 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF----NYASLLFHQISRPNEYA 85
           LL  C     + QIH Q++++   K +  +  +I+L       + A  +F     P+   
Sbjct: 38  LLSSCKHLNPLLQIHAQIIVSGF-KHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRIL 96

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MIR  T + ++Y+ +L++YY M   GL+PD +T+ FV  +C   L L  GV  H  +
Sbjct: 97  WNSMIRAYTRS-KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEI 155

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            + GL+ D  +   L+ MY++ G L  AR+VFD++ +RD+V+WN+MI+G S+     EAV
Sbjct: 156 DRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAV 215

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           + F  M+     P  ++L+++      L ++ L + + G+V +   D +  + + LID+Y
Sbjct: 216 DFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLY 273

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG +  ARRVFD MV++D V+W  M+  YA NG   E + LF++MK   V  +K++ +
Sbjct: 274 SKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAV 333

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
               A A    L+ GK +   A Q+ +  DI            CG  + A ++F  +   
Sbjct: 334 SAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR 393

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           + V+W+A+I+AL   G   EAL LF+ M  +    +PN VT + +L AC    L+  G+ 
Sbjct: 394 DLVAWSAIIAALVQTGYPEEALSLFQEMQNQ--KMKPNRVTLMSILPACADLSLLKLGKS 451

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +    +    +       + +V +YA+ G  + A     RM  +
Sbjct: 452 I-HCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR 494



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 236/461 (51%), Gaps = 29/461 (6%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS------LKLYYQMKRLGLKPDNF 120
           D + A  +F Q+   ++ ++  M+ G       Y+H+      L+L+ +MK   ++ +  
Sbjct: 278 DVDVARRVFDQMVDQDDVSWGTMMAG-------YAHNGCFVEVLELFDKMKLGNVRINKV 330

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           +    F++ A  + L  G  +H    +  +D D  V+  L+ MYA+CG+ + A+++F  +
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGL 390

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           + RDLV+W+++I+   + GY +EA+ LF  M+ ++  P+ +TL+S+L +C DL  L LGK
Sbjct: 391 QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +  F VK  MD +   G+AL+ MY KCG    A   F+ M ++D+VTWN++I  YAQ G
Sbjct: 451 SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
               AI +F +++ + +NPD  T++GV+ ACA +  LD G  +     + G   D     
Sbjct: 511 DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570

Query: 358 --------CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                   CGS+  A  +F     T +EV+WN +I+A   NG A EA+  F +M  E   
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-- 628

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             PN VTF+ VL A  +     EG   F       G +  +   + ++D+YA+ G L  +
Sbjct: 629 FHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYS 687

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
                 M  K D +   A+L       + D +  +  L+ E
Sbjct: 688 EKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQE 727



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 251/509 (49%), Gaps = 25/509 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C     +Q+    H ++    +++  F+   ++D+     D   A  +F ++ + +
Sbjct: 135 VLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRD 194

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             A+N MI GL+ + +    ++  +  M+ +G++P + +   +F     L  +    S+H
Sbjct: 195 VVAWNAMIAGLSQS-EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIH 253

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             VF+   D    VS+ LI +Y++CG +D AR+VFD++ ++D VSW +M++GY+  G   
Sbjct: 254 GYVFR--RDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFV 311

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E +ELF +M+      ++++ VS   +  +  DL  GK + G  ++ ++D +  + + L+
Sbjct: 312 EVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLM 371

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG    A+++F  +  +D+V W+A+I A  Q G   EA+ LF  M+   + P+++
Sbjct: 372 VMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL+ +L ACA +  L LGK +  +  +  +  D+            CG    AL  F  M
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + V+WN++I+  A  G  + A+ +F ++     A  P+  T +GV+ AC     +D+
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL--SAINPDAGTMVGVVPACALLNDLDQ 549

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA- 490
           G  +  L+    G        + ++D+YA+ G L  A     +     DE+    ++ A 
Sbjct: 550 GTCIHGLI-VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            Q     +      Q+ LE    NS  +V
Sbjct: 609 MQNGHAKEAISSFHQMRLENFHPNSVTFV 637



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 15/323 (4%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           YP +  SC +L   N  + +H+ +   G      ++H LI +Y+   K D AR VFD   
Sbjct: 35  YPRLLSSCKHL---NPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTP 90

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
               + WNSMI  Y++     EA+E++  M E+   PD+ T   VL +C    +L  G W
Sbjct: 91  NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVW 150

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
             G + +  ++ + ++G+ L+DMY K G L  AR VFD M  +DVV WNAMI   +Q+  
Sbjct: 151 FHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED 210

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
             EA+  F  M+  GV P  ++L+ +      +  ++L + +  Y  +R           
Sbjct: 211 PCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLI 270

Query: 355 DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           D++  CG +D A +VF+ M   ++VSW  M++  A NG   E L LF++M  + G  R N
Sbjct: 271 DLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM--KLGNVRIN 328

Query: 413 DVTFIGVLSACVHAGLVDEGRRL 435
            V+ +    A      +++G+ +
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEI 351


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 287/516 (55%), Gaps = 16/516 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL      +    A  LF  + + +  ++N +I G          +  L+  M   G+
Sbjct: 198 NTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN-GLMGEAEHLFRGMISAGI 256

Query: 116 KPDNFTYPFVFISCAN-LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           KPD+ T+   F+ C N LL+L H   +H  + +  +  D  +  +LI +Y +C  ++ A+
Sbjct: 257 KPDSITFA-SFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQ 315

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           K   +    D V   +MISGY   G  KEA+E F  + +E   P  +T  S+  +   L 
Sbjct: 316 KNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLA 375

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L LGK + G ++K K+D   ++GSA++DMY KCG L  A RVF+ +  KD + WN+MIT
Sbjct: 376 ALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMIT 435

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           + +QNG   EAI LF +M   G   D +++ G LSACA++ AL  GK +     +  LR 
Sbjct: 436 SCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRS 495

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D++           CG+++ + +VF+ M   NEVSWN++ISA   +G   E L LF  M 
Sbjct: 496 DLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEML 555

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G   +P+ VTF+G++SAC HAG VDEG R + LM+  +G+  + EHY+C+ D++ RAG
Sbjct: 556 RNG--IQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAG 613

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA++ +  MP   D  V G LLGAC    N ++++   + L +++  NSG YV+ + 
Sbjct: 614 RLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLAN 673

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + A    W    K+R++M+E+GV K PG SWI +++
Sbjct: 674 VQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNN 709



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 220/448 (49%), Gaps = 19/448 (4%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           + +R   LKD   A  LF+ +      A+N MIRG T   Q ++++L  Y +M   G+ P
Sbjct: 1   MYVRTGSLKD---AKNLFYTLQLGCTSAWNWMIRGFTMMGQ-FNYALLFYLKMLGAGVSP 56

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D +T+P+V  +C  L ++  G  VH +V  +GL ED  V  SLI +YA  G L  A+ +F
Sbjct: 57  DKYTFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLF 116

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D I ++D V WN M++GY K G +  A+++F  MR  E  P+ +T   VL  C     L 
Sbjct: 117 DNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLD 176

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LG  + G  V   ++L+  + + L+ MY KC  L  AR++FD +   D+V+WN +I+ Y 
Sbjct: 177 LGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYV 236

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           QNGL  EA  LF  M  AG+ PD IT    L     + +L   K +  Y  +  +  D+F
Sbjct: 237 QNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      C  ++ A K        + V    MIS    NG+  EAL  F  + +E 
Sbjct: 297 LKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQE- 355

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
              +P  VTF  +  A      ++ G+ L   +  +  L  K    S ++D+YA+ G L 
Sbjct: 356 -RMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLD 413

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQ 494
            A     R+ EK D I   +++ +C + 
Sbjct: 414 LACRVFNRITEK-DAICWNSMITSCSQN 440



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 199/392 (50%), Gaps = 18/392 (4%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+     L  + +  S K  ++IH  ++ + +    FL   +ID+    +D   A     
Sbjct: 260 SITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLC 319

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q S  +      MI G      K   +L+ +  + +  +KP + T+  +F + A L ALN
Sbjct: 320 QSSSFDTVVCTTMISGYVLN-GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALN 378

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H S+ K  LDE  HV  +++ MYA+CG+LD A +VF+ I E+D + WNSMI+  S
Sbjct: 379 LGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCS 438

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G   EA+ LF +M  E    D +++   L +C +L  L  GK + G ++K  +  + Y
Sbjct: 439 QNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLY 498

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             S+LIDMY KCG L  +RRVFD M  K+ V+WN++I+AY  +G   E + LF+ M   G
Sbjct: 499 AESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNG 558

Query: 317 VNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDA 364
           + PD +T +G++SAC   G +D G        ++Y     + H     D+F   G + +A
Sbjct: 559 IQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEA 618

Query: 365 LKVFEDMPVTNEVS-WNAMISALAFNGRAHEA 395
            +    MP   +   W  ++ A   +G    A
Sbjct: 619 FETINSMPFPPDAGVWGTLLGACHIHGNVELA 650


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 300/559 (53%), Gaps = 35/559 (6%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQ 77
           LL EKL  L  KC +  +V QIH Q+L   + +  F+  ++I      +    A  +F+ 
Sbjct: 20  LLEEKLCDL-HKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNH 78

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +  PN + +N +IR         S     ++QM++ GL PDNFTYPF+  +C+   +L  
Sbjct: 79  VPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPL 138

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEIRERDLVSWNSMISGY 195
              +H+ V KIG   D  V +SLI  Y+RCG   LD A  +F  + ERD+V+WNSMI G 
Sbjct: 139 VRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGL 198

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-N 254
            + G  + A +LF  M +     D ++  ++L      G++        F +  +M   N
Sbjct: 199 VRCGELQGACKLFDEMPDR----DMVSWNTMLDGYAKAGEMD-----TAFELFERMPWRN 249

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
               S ++  Y K G +  AR +FD    K+VV W  +I  YA+ GL+ EA  L+ +M+ 
Sbjct: 250 IVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEE 309

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSI 361
           AG+ PD   L+ +L+ACA  G L LGK +  +AS R  R            D++  CG +
Sbjct: 310 AGMRPDDGFLLSILAACAESGMLGLGKRI--HASMRRWRFRCGAKVLNAFIDMYAKCGCL 367

Query: 362 DDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           D A  VF  M    +V SWN+MI   A +G   +AL LF  M +EG    P+  TF+G+L
Sbjct: 368 DAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEG--FEPDTYTFVGLL 425

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
            AC HAGLV+EGR+ F  M   +G++P+ EHY CM+DL  R GHL EA+  +  MP + +
Sbjct: 426 CACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPN 485

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
            I+LG LL AC+   + D+++ V + L ++E S+ GNY + S I+A    W + A +R  
Sbjct: 486 AIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQ 545

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M+  G  K  G S I +++
Sbjct: 546 MKNTGGEKPSGASSIEVEE 564


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 174/480 (36%), Positives = 277/480 (57%), Gaps = 23/480 (4%)

Query: 101 SHSLKLYYQMKRLGLKPDNFTYPFV------FISCANLLALNHGV----SVHSSVFKIGL 150
           S ++ ++   ++  L P  ++  F       FI    L A N  V    + H    ++ L
Sbjct: 35  SRNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMEL 94

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
             D  +S+ LI  Y++CG ++ AR+VFD + ER LVSWN+MI  Y++     EA+++F  
Sbjct: 95  QGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWE 154

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           MR E F   E T+ SVL +CG   D +  K +    +K  +DLN Y+G+AL+D+Y KCG 
Sbjct: 155 MRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGM 214

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  A +VF++M +K  VTW++M+  Y Q+    EA++L+ R +   +  ++ TL  V+ A
Sbjct: 215 INDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 274

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSW 379
           C+++ AL  GK +     + G   ++F           CGS+ ++  +F ++   N   W
Sbjct: 275 CSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELW 334

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           N +IS  A + R  E ++LFE+M ++G    PN+VTF  +LS C H GLV+EGRR F LM
Sbjct: 335 NTIISGFAKHARPKEVMILFEKMQQDG--MHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM 392

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
            +++GL P   HYSCMVD+  RAG LSEA++ ++ +P +    + G+LL +C+  KN ++
Sbjct: 393 RTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLEL 452

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           ++   + L E+E  N+GN+V+ S I+A  K W++ AK R L+R+  V K  G SWI I D
Sbjct: 453 AEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKD 512



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 150/258 (58%), Gaps = 3/258 (1%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC-ANLLALNHGVSVHS 143
           ++N MI GL T  +  S +L ++++M+  G K   FT   V  +C AN  AL     +H 
Sbjct: 131 SWNTMI-GLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECK-KLHC 188

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K  LD + +V  +L+ +YA+CG ++ A +VF+ ++++  V+W+SM++GY +    +E
Sbjct: 189 LSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEE 248

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+ L+ R +      ++ TL SV+ +C +L  L+ GK +   + K+    N ++ S+ +D
Sbjct: 249 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVD 308

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG+L  +  +F  +  K++  WN +I+ +A++    E ++LF +M+  G++P+++T
Sbjct: 309 MYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 368

Query: 324 LIGVLSACASIGALDLGK 341
              +LS C   G ++ G+
Sbjct: 369 FSSLLSVCGHTGLVEEGR 386



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 2/214 (0%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N A  +F  +   +   ++ M+ G   + + Y  +L LY + +R+ L+ + FT   V  +
Sbjct: 216 NDAVQVFESMQDKSSVTWSSMVAGYVQS-KNYEEALLLYRRAQRMSLEQNQFTLSSVICA 274

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C+NL AL  G  +H+ + K G   +  V+ S + MYA+CG L  +  +F E++E+++  W
Sbjct: 275 CSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELW 334

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVV 247
           N++ISG++K    KE + LF +M+++   P+E+T  S+L  CG  G +  G ++ +    
Sbjct: 335 NTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 394

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
              +  N    S ++D+ G+ G L  A  +  ++
Sbjct: 395 TYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 428


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/452 (37%), Positives = 266/452 (58%), Gaps = 20/452 (4%)

Query: 123 PFVFIS----CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
           P  FIS    C N+  +     VH+ V   G+  D  V++ L+ M A+   L +A  +F+
Sbjct: 3   PDFFISTLFKCRNIFQIKQ---VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFN 59

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           ++ ERD VSW+ MI G+ K G  +   + F  +      PD  +L  V+ +C D   L++
Sbjct: 60  KMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIM 119

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G+ +   V+KN + L+ ++ S L+DMY KCG +  A+++FD M  KD+VT   MI  YA+
Sbjct: 120 GRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAE 179

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
            G  NE+ +LF++M+  G  PDK+ ++ +++ACA +GA++  + V  Y   R    D+  
Sbjct: 180 CGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVEL 239

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CGSID + ++F+ M   N +SW+AMI A  ++G+  EAL LF  M   G 
Sbjct: 240 GTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSG- 298

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              PN +TFI +L AC HAGLVD+G +LF LMS S+G+ P  +HY+CMVDL  RAG L +
Sbjct: 299 -IIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQ 357

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A   +E M  + DE +  A LGAC+  +  D++++  +LLL +++ N G+Y++ S I+AN
Sbjct: 358 ALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYAN 417

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
              W D AK+R LM ++ + K PG +WI +D+
Sbjct: 418 AGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDN 449



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 236/446 (52%), Gaps = 41/446 (9%)

Query: 27  LLSLLKKCPSTKTVQQIHTQM----LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
            +S L KC +   ++Q+H Q+    +I+ +   N LL      KD   A LLF+++   +
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERD 65

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             +++VMI G       Y    + + ++ R G KPDNF+ PFV  +C + + L  G  +H
Sbjct: 66  PVSWSVMIGGFVKNGD-YERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIH 124

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S+V K GL  D+ V  +L+ MYA+CG +D+A+++FD + ++DLV+   MI+GY++ G   
Sbjct: 125 STVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPN 184

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E+  LF +MR + F+PD++ +V+++ +C  LG +   + V  +V   +  L+  +G+A+I
Sbjct: 185 ESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMI 244

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG++  +R +FD M  K+V++W+AMI AY  +G   EA+ LF+ M  +G+ P++I
Sbjct: 245 DMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRI 304

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV----- 377
           T I +L AC+  G                         +DD L++F  M V+  V     
Sbjct: 305 TFISLLYACSHAGL------------------------VDDGLQLFSLMSVSYGVRPDVK 340

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
            +  M+  L   GR  +AL L E M  E      ++  +   L AC     VD   +   
Sbjct: 341 HYTCMVDLLGRAGRLDQALRLIENMEVE-----KDEGIWCAFLGACRIHRQVDLAEKAAK 395

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAG 463
           L+ S     P   HY  + ++YA AG
Sbjct: 396 LLLSLQTQNPG--HYILLSNIYANAG 419


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/595 (33%), Positives = 303/595 (50%), Gaps = 78/595 (13%)

Query: 37  TKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRG 92
           ++ V+ IH  ++        FL   I+     +K   YA  +F +I +PN +++N ++  
Sbjct: 22  SRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLA 81

Query: 93  LTTA--------------------W----QKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
            + A                    W    + YS S  +   +K       +F+     ++
Sbjct: 82  YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141

Query: 129 CANLLALNH-------GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF---- 177
              +L L+        G  +H  V K+G +    V   L+ MYA  G +  A+KVF    
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201

Query: 178 ---------------------DEIR-----ERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
                                D ++     E+D VSW +MI G ++ G AKEA+E F  M
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM 261

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
           + +    D+    SVL +CG LG +  GK +   +++     + Y+GSALIDMY KC  L
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             A+ VFD M  K+VV+W AM+  Y Q G + EA+ +F  M+ +G++PD  TL   +SAC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
           A++ +L+ G      A   GL H +            CG IDD+ ++F +M V + VSW 
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           AM+SA A  GRA E + LF++M + G   +P+ VT  GV+SAC  AGLV++G+R F LM+
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHG--LKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS 500
           S +G++P   HYSCM+DL++R+G L EA  F+  MP   D I    LL AC+ + N ++ 
Sbjct: 500 SEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIG 559

Query: 501 QRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +   + L+E++  +   Y + S I+A+   WD  A++R  MREK V K PG SWI
Sbjct: 560 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 304/546 (55%), Gaps = 21/546 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQIS--R 80
           LL++L +  +    QQ+H +++I+  +    L   +    I     ++A+  F++I   +
Sbjct: 10  LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69

Query: 81  PNEYAFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            N +++N ++ G + +    YS  L LY +M+R     D+F   F   +C  L  L +G+
Sbjct: 70  RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H    K GLD+DD+V+ SL+ MYA+ G ++SA+KVFDEI  R+ V W  ++ GY K  
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMG 258
              E   LF  MR+     D +TL+ ++ +CG++    +GK V G  ++   +D + Y+ 
Sbjct: 190 KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQ 249

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +++IDMY KC  L  AR++F+  V+++VV W  +I+ +A+   + EA  LF +M    + 
Sbjct: 250 ASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESIL 309

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P++ TL  +L +C+S+G+L  GK V  Y  + G+  D             CG+I  A  V
Sbjct: 310 PNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTV 369

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ MP  N +SW++MI+A   NG   EAL  F +M  +     PN VTF+ +LSAC H+G
Sbjct: 370 FDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQN--VVPNSVTFVSLLSACSHSG 427

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            V EG + F+ M+  +G++P+ EHY+CMVDL  RAG + EA  F++ MP K      GAL
Sbjct: 428 NVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+  K  D++  + + LL +E   S  YV+ S I+A+  MW+    +R  M  KG  
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYR 547

Query: 548 KTPGCS 553
           K  G S
Sbjct: 548 KHVGQS 553


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 310/589 (52%), Gaps = 57/589 (9%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
           ++   LLS+L+ C S + + Q+   + ++ +    F   R++      D     +A+ + 
Sbjct: 29  VVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAHAAAVL 88

Query: 76  HQISR-PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            Q +  PN Y    M+RG   A  K +H+L L+ ++ R  L  D  T  F   + A   +
Sbjct: 89  AQCTEGPNAYMLATMMRGFLRA-GKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSS 147

Query: 135 LNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
                ++H   FK G + +     ++L+ MY     L  ARK+FDE+ +RD+VSW ++I 
Sbjct: 148 PTE--AIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLID 205

Query: 194 GYSKMGYAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           GY++ G   EA  +F RM   E   P+E+TLV+   + G +G L LG+ V   +V++   
Sbjct: 206 GYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGR 265

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG------------ 300
           ++  + +AL+DM+GKCG +  A+ VFD M  KDV +W +M++AYA+ G            
Sbjct: 266 MSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEI 325

Query: 301 -------------------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
                              + +EAI +FN M  AGV P   TL+ VLSACA + +LD+G 
Sbjct: 326 PNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGT 385

Query: 342 WV-DKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           W+ D Y     +           D+F  CG +  A ++F +M   N VSWN MI A   +
Sbjct: 386 WLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLH 445

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G+  EAL LF+    +G    P++ T+IGVLSAC H GLV EGR  F  M   +G+ P++
Sbjct: 446 GQPEEALHLFQEF--KGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRA 503

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+CM+DL  + G L EA++    MP   DE   GALL AC+   N ++ +     L  
Sbjct: 504 EHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAG 563

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++ S+SG YV+ S+I+A+   W     +R +MR++ V K PGCS I +D
Sbjct: 564 LDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVD 612


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 286/502 (56%), Gaps = 13/502 (2%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F+ A  LF  +SR +   +N MI G   +      SL  +Y+M   G+ PD  T+  +  
Sbjct: 286 FDDAIKLFRMMSRADTVTWNCMISGYVQS-GLMEESLIFFYEMISSGVLPDAITFSSLLP 344

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           S +    L +   +H  + +  +  D  ++ +LI  Y +C  +  A+K+F +    D+V 
Sbjct: 345 SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVV 404

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           + +MISGY   G   +A+E+F  + + +  P+EITLVS+L   G L  L LG+ + GF++
Sbjct: 405 FTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFII 464

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K   D    +G A+IDMY KCG +  A  +F  +  +D+V+WN+MIT  AQ+   + AI 
Sbjct: 465 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAID 524

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           +F +M  +G+  D +++   LSACA++ +   GK +  +  +  L  D++          
Sbjct: 525 IFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYA 584

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG++  A+ VF+ M   N VSWN++I+A   +G+  ++L LF  M ++ G  RP+ +TF
Sbjct: 585 KCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSG-NRPDQITF 643

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + ++S C H G VDEG R F  M+  +G+ P+ EHY+C+VDL+ RAG LSEA++ V+ MP
Sbjct: 644 LEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMP 703

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
              D  V G LLGA +  KN ++++     L++++  NSG YV+ S   AN   W+   K
Sbjct: 704 FPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTK 763

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R+LM+E+ V K PG SWI I+
Sbjct: 764 VRSLMKEREVQKIPGYSWIEIN 785



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 237/499 (47%), Gaps = 35/499 (7%)

Query: 23  LREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
           L  +L  LL+ C +   +   +Q+H  +++N I   ++   RI+ +      F+    +F
Sbjct: 30  LPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMF 89

Query: 76  HQIS------RPNEYAFNVMIR-GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           +++       RP     +  +R GL       + +L  Y++M   G+ PD  T+P +  +
Sbjct: 90  YRLDSRLSSIRPWNSIISSFVRMGLL------NQALAFYFKMLCFGVSPDVSTFPCLVKA 143

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C  L        +  +V  +G+D ++ V+ SLI  Y   GK+D A K+FD + ++D V W
Sbjct: 144 CVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIW 203

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N M++GY+K G +   ++ F  MR ++  P+ +T   VL  C     + LG  + G VV 
Sbjct: 204 NVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVV 263

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           + +D    + ++L+ MY KCG    A ++F  M   D VTWN MI+ Y Q+GL  E+++ 
Sbjct: 264 SGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIF 323

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F  M  +GV PD IT   +L + +    L+  + +  Y  +  +  DIF           
Sbjct: 324 FYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFK 383

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C  +  A K+F      + V + AMIS    NG   +AL +F  + K      PN++T +
Sbjct: 384 CRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKV--KISPNEITLV 441

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +L        +  GR L   +    G   +      ++D+YA+ G ++ A++   R+ +
Sbjct: 442 SILPVIGGLLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSK 500

Query: 478 KVDEIVLGALLGACQKQKN 496
           + D +   +++  C +  N
Sbjct: 501 R-DIVSWNSMITRCAQSDN 518


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 296/553 (53%), Gaps = 24/553 (4%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           + LL+   K  S K   QIH+Q++       +   N LL+        ++  LLF+    
Sbjct: 101 KHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPH 160

Query: 81  P--NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           P  N   +  +I  L+ + + +  +L  + +M+  G+ P++FT+  +  +CA+   L+ G
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPF-QALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H+ + K     D  V+ +L+ MYA+CG +  A  VFDE+  R+LVSWNSMI G+ K 
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN 279

Query: 199 GYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
                A+ +F   RE   L PD++++ SVL +C  L +L  GK V G +VK  +    Y+
Sbjct: 280 KLYGRAIGVF---REVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYV 336

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++L+DMY KCG    A ++F    ++DVVTWN MI    +     +A   F  M   GV
Sbjct: 337 KNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGV 396

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PD+ +   +  A ASI AL  G  +  +  + G   +             CGS+ DA +
Sbjct: 397 EPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQ 456

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF +    N V W AMI+    +G A+EA+ LFE M  EG    P  +TF+ VLSAC H 
Sbjct: 457 VFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEG--VVPEYITFVSVLSACSHT 514

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           G +D+G + F+ M++   + P  EHY+CMVDL  R G L EA  F+E MP + D +V GA
Sbjct: 515 GKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGA 574

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC K  N ++ + V + L ++E  N GNY++ S I+    M +++ ++R LM   GV
Sbjct: 575 LLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGV 634

Query: 547 SKTPGCSWIGIDD 559
            K  GCSWI + +
Sbjct: 635 RKESGCSWIDVKN 647


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 285/497 (57%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + R +   +N MI G          +L L+  M++ G++PD+ T   +  +  +L 
Sbjct: 304 LFGLMPRDDLVTWNGMISGCVQN-GFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLN 362

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
             N G  +H  + +  +  D  +  +L+ +Y +C  +  A+ V+D  +  D+V  ++MIS
Sbjct: 363 GFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMIS 422

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY   G ++EAV++F  + E+   P+ + + SVL +C  +  + LG+ +  + +KN  + 
Sbjct: 423 GYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEG 482

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             Y+ SAL+DMY KCG L  +  +F  +  KD VTWN+MI+++AQNG   EA+ LF  M 
Sbjct: 483 RCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMC 542

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV    +T+  VLSACAS+ A+  GK +     +  +R D+F           CG+++
Sbjct: 543 MEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLE 602

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A +VFE MP  NEVSWN++I++    G   E++ L   M +EG  A  + VTF+ ++SA
Sbjct: 603 WAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKA--DHVTFLALVSA 660

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAG V EG RLF  M+  + + P+ EH++CMVDLY+RAG L +A + +  MP K D  
Sbjct: 661 CAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAG 720

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL AC+  +N ++++   Q L +++  NSG YV+ S I A    WD  +K+R LM+
Sbjct: 721 IWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMK 780

Query: 543 EKGVSKTPGCSWIGIDD 559
           +  V K PG SW+ +++
Sbjct: 781 DTKVQKIPGYSWVDVNN 797



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 251/528 (47%), Gaps = 34/528 (6%)

Query: 25  EKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLL-IRIIDL----KDFNYASLLFH 76
            +LL++L+ C S   +    Q+H + +   +   +  L  R++ +    + F  A  +F 
Sbjct: 40  RRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFS 99

Query: 77  QISR---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFVFISCAN 131
            + R        +N +IRGLT A   Y  +L  Y +M        PD+ T+P+V  SCA 
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMA-GDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA 158

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L A+  G  VH +   +GLD D  V  +LI MYA  G L  AR+VFD + ERD V WN M
Sbjct: 159 LGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVM 218

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           + GY K G    AVELFG MR     P+  TL   L       DL  G  +    VK  +
Sbjct: 219 MDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           +    + + L+ MY KC  L    ++F  M   D+VTWN MI+   QNG  ++A++LF  
Sbjct: 279 ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCD 338

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M+ +G+ PD +TL+ +L A   +   + GK +  Y  +  +  D+F           C +
Sbjct: 339 MQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRA 398

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +  A  V++     + V  + MIS    NG + EA+ +F  + ++G   RPN V    VL
Sbjct: 399 VRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG--IRPNAVAIASVL 456

Query: 421 SACVHAGLVDEGRRL--FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            AC     +  G+ L  + L ++  G   +    S ++D+YA+ G L  +     ++  K
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEG---RCYVESALMDMYAKCGRLDLSHYIFSKISAK 513

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
            DE+   +++ +  +    + +  + + +  +E     N  ISS + A
Sbjct: 514 -DEVTWNSMISSFAQNGEPEEALNLFREMC-MEGVKYSNVTISSVLSA 559



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 205/400 (51%), Gaps = 26/400 (6%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
           +++H  ++ N +    FL+  ++D+  F   ++   Q    +  A +V+I   +T    Y
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIY-FKCRAVRMAQSVYDSSKAIDVVIG--STMISGY 424

Query: 101 ------SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
                   ++K++  +   G++P+      V  +CA++ A+  G  +HS   K   +   
Sbjct: 425 VLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRC 484

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  +L+ MYA+CG+LD +  +F +I  +D V+WNSMIS +++ G  +EA+ LF  M  E
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
                 +T+ SVL +C  L  +  GK + G V+K  +  + +  SALIDMYGKCG L  A
Sbjct: 545 GVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            RVF++M  K+ V+WN++I +Y   GL  E++ L   M+  G   D +T + ++SACA  
Sbjct: 605 HRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHA 664

Query: 335 GALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNA 381
           G +  G        ++Y     + H     D++   G +D A+++  DMP   +   W A
Sbjct: 665 GQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           ++ A     R H  + L E  S+E     P++  +  ++S
Sbjct: 725 LLHAC----RVHRNVELAEIASQELFKLDPHNSGYYVLMS 760


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 285/510 (55%), Gaps = 23/510 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N  +L    + + + +++N +I  L  +    + +L+ +  M++L L P   ++P    +
Sbjct: 27  NLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEALRAFSSMRKLSLYPTRSSFPCAIKA 85

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C++LL +  G   H   F  G   D  VS +LI MY+ CGKL+ ARKVFDEI +R++VSW
Sbjct: 86  CSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEE------FLPDEITLVSVLGSCGDLGDLVLGKWV 242
            SMI GY   G A +AV LF  +  EE         D + +VSV+ +C  +    L + +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESI 205

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCG--ALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
             FV+K   D    +G+ L+D Y K G   +  AR++FD +V+KD V++N++++ YAQ+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 301 LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           +SNEA  +F R+ K   V  + ITL  VL A +  GAL +GK +     + GL  D+   
Sbjct: 266 MSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG ++ A   F+ M   N  SW AMI+    +G A +AL LF  M   G  
Sbjct: 326 TSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-- 383

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            RPN +TF+ VL+AC HAGL D G   F+ M   FG+ P  EHY CMVDL  RAG L +A
Sbjct: 384 VRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
           +D +++M  + D I+  +LL AC+  KN ++++  +  L E++ SN G Y++ S I+A+ 
Sbjct: 444 YDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADS 503

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             W D  ++R  M+ +G+ K PG S + ++
Sbjct: 504 GRWKDVERVRMTMKNRGLVKPPGFSLLELN 533


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 196/550 (35%), Positives = 292/550 (53%), Gaps = 23/550 (4%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPN 82
           ++  C  ++ ++   Q+H  ++    +K  F    ++D    L D   A+ +F ++   +
Sbjct: 211 VVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAAD 270

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N  I G  T    +  +L+L  QMK  GL P+ FT   V  +CA   A N G  +H
Sbjct: 271 VVSWNAFISGCVTHGHDH-RALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIH 329

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K   D D+ V+  L+ MYA+ G LD ARKVFD +  RDL+ WN++ISG S  G   
Sbjct: 330 GFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHG 389

Query: 203 EAVELFGRMREEEFLPD--EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           E + LF RMR+E    D    TL SVL S      +   + V     K  +  + ++ + 
Sbjct: 390 EVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVING 449

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LID Y KCG L  A +VF    + D+++   M+TA +Q     +AI LF +M   G+ PD
Sbjct: 450 LIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPD 509

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
              L  +L+AC S+ A + GK V  +  +R    D+F           CGSI+DA   F 
Sbjct: 510 SFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFS 569

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +P    VSW+AMI  LA +G    AL LF RM  EG A  PN +T   VLSAC HAGLV
Sbjct: 570 GLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVA--PNHITLTSVLSACNHAGLV 627

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           D+ ++ F+ M  +FG+    EHY+CM+D+  RAG L +A + V  MP + +  V GALLG
Sbjct: 628 DDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLG 687

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           A +  ++ ++ +   + L  +E   SG +V+ +  +A+  MWD+ AK+R LM++  V K 
Sbjct: 688 ASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKE 747

Query: 550 PGCSWIGIDD 559
           P  SW+ I D
Sbjct: 748 PAMSWVEIKD 757



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 231/474 (48%), Gaps = 49/474 (10%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++N MI       Q    ++ ++ +M   G +P+ F +  V  +C     L  G  V
Sbjct: 169 NAVSWNTMISAYVKNDQS-GDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQV 227

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H +V + G ++D   +++L+ MY++ G ++ A  VF+++   D+VSWN+ ISG    G+ 
Sbjct: 228 HGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHD 287

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+EL  +M+    +P+  TL SVL +C   G   LG+ + GF+VK   D + ++   L
Sbjct: 288 HRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGL 347

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD- 320
           +DMY K G L  AR+VFD M  +D++ WNA+I+  + +G   E + LF+RM+  G++ D 
Sbjct: 348 VDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDV 407

Query: 321 -KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
            + TL  VL + AS  A+   + V   A + GL  D             CG +D A+KVF
Sbjct: 408 NRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVF 467

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           ++    + +S   M++AL+      +A+ LF +M ++G    P+      +L+AC     
Sbjct: 468 KESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG--LEPDSFVLSSLLNACTSLSA 525

Query: 429 VDEGRRLF----------DLMSS------------------SFGLIPKSE--HYSCMVDL 458
            ++G+++           D+ +                   +F  +P+     +S M+  
Sbjct: 526 YEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGG 585

Query: 459 YARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
            A+ GH   A D   RM ++    + I L ++L AC      D +++  + + E
Sbjct: 586 LAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKE 639



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/413 (31%), Positives = 203/413 (49%), Gaps = 20/413 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F +I  P   +++ ++   +        +L  +  M+  G+  + F  P V + CA
Sbjct: 56  ARAVFDEIPDPCHVSWSSLVTAYSNNGMPRD-ALLAFRAMRGRGVPCNEFALPVV-LKCA 113

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI----RERDLV 186
               +  G  VH+      L  D  V+++L+ +Y   G +D AR++FDE      ER+ V
Sbjct: 114 P--DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAV 171

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MIS Y K   + +A+ +F  M      P+E     V+ +C    DL  G+ V G V
Sbjct: 172 SWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAV 231

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           V+   + + +  +AL+DMY K G +  A  VF+ M   DVV+WNA I+    +G  + A+
Sbjct: 232 VRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRAL 291

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-------- 358
            L  +MK +G+ P+  TL  VL ACA  GA +LG+ +  +  +     D F         
Sbjct: 292 ELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMY 351

Query: 359 ---GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
              G +DDA KVF+ MP  + + WNA+IS  + +GR  E L LF RM KEG     N  T
Sbjct: 352 AKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTT 411

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
              VL +   +  +   R++  L +   GL+  S   + ++D Y + G L  A
Sbjct: 412 LASVLKSTASSEAICHTRQVHAL-AEKIGLLSDSHVINGLIDSYWKCGQLDYA 463



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 183/370 (49%), Gaps = 24/370 (6%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +HS + K GL      S+ L+T+Y+RC    +AR VFDEI +   VSW+S+++ YS 
Sbjct: 23  GAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  ++A+  F  MR      +E  L  VL  C    D+  G  V    V  ++  + ++
Sbjct: 81  NGMPRDALLAFRAMRGRGVPCNEFALPVVL-KCAP--DVRFGAQVHALAVATRLVHDVFV 137

Query: 258 GSALIDMYGKCGALVPARRVFDAMVN----KDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
            +AL+ +YG  G +  ARR+FD  V     ++ V+WN MI+AY +N  S +AI +F  M 
Sbjct: 138 ANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMV 197

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSID 362
           ++G  P++     V++AC     L+ G+ V     + G   D+F            G I+
Sbjct: 198 WSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIE 257

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  VFE MP  + VSWNA IS    +G  H AL L  +M   G    PN  T   VL A
Sbjct: 258 MAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSG--LVPNVFTLSSVLKA 315

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C  AG  + GR++   M  +     +      +VD+YA+ G L +A    + MP + D I
Sbjct: 316 CAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMPRR-DLI 373

Query: 483 VLGALLGACQ 492
           +  AL+  C 
Sbjct: 374 LWNALISGCS 383



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 23/381 (6%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQIS 79
           L S+LK C         +QIH  M+        F+ + ++D+       + A  +F  + 
Sbjct: 309 LSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP 368

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD--NFTYPFVFISCANLLALNH 137
           R +   +N +I G +    ++   L L+++M++ GL  D    T   V  S A+  A+ H
Sbjct: 369 RRDLILWNALISGCSHD-GRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH 427

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
              VH+   KIGL  D HV + LI  Y +CG+LD A KVF E R  D++S  +M++  S+
Sbjct: 428 TRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQ 487

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
             + ++A++LF +M  +   PD   L S+L +C  L     GK V   ++K +   + + 
Sbjct: 488 CDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFA 547

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+  Y KCG++  A   F  +  + +V+W+AMI   AQ+G    A+ LF+RM   GV
Sbjct: 548 GNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGV 607

Query: 318 NPDKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIF--CGSIDDAL 365
            P+ ITL  VLSAC   G +D  K           +D+         DI    G ++DA+
Sbjct: 608 APNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAM 667

Query: 366 KVFEDMPV-TNEVSWNAMISA 385
           ++  +MP   N   W A++ A
Sbjct: 668 ELVNNMPFQANAAVWGALLGA 688


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 281/514 (54%), Gaps = 15/514 (2%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           L+   +   D + A   F  I+  +   +N +I  L         + + YY+M+  G+  
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVE-AFEQYYRMRSDGVAL 328

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           +  TY  +  +C+   AL  G  +HS + + G   D  + ++LI+MYARCG L  AR++F
Sbjct: 329 NRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
             + +RDL+SWN++I+GY++     EA+ L+ +M+ E   P  +T + +L +C +     
Sbjct: 389 YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYA 448

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            GK +   ++++ +  N ++ +AL++MY +CG+L+ A+ VF+    +DV++WN+MI  +A
Sbjct: 449 DGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-- 355
           Q+G    A  LF  M+   + PD IT   VLS C +  AL+LGK +    ++ GL+ D  
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568

Query: 356 ---------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                    I CGS+ DA  VF  +   + +SW AMI   A  G   +A+ LF +M  EG
Sbjct: 569 LGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628

Query: 407 GAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
              RP D  TF  +LSAC HAGLV EG ++F  M S +G++P  EHY C+V L  RA   
Sbjct: 629 --FRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRF 686

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA   + +MP   D  V   LLGAC+   N  +++      L++ + N   Y++ S ++
Sbjct: 687 QEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVY 746

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           A    WDD AK+R +M  +G+ K PG SWI +D+
Sbjct: 747 AAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 780



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 250/470 (53%), Gaps = 26/470 (5%)

Query: 24  REKLLSLLKKCPSTK---TVQQIHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFH 76
           R   ++LL+ C   +     ++IH QM+   +       N L+   +  +    A  +F 
Sbjct: 27  RATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFK 86

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           ++ R +  ++N +I     A Q +   + +L+ +M+  G  P+  TY  +  +C +   L
Sbjct: 87  EMPRRDVISWNSLIS--CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
            +G  +HS + K G   D  V +SL++MY +CG L  AR+VF  I  RD+VS+N+M+  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           ++  Y KE + LFG+M  E   PD++T +++L +      L  GK +    V+  ++ + 
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            +G+AL+ M  +CG +  A++ F  + ++DVV +NA+I A AQ+G + EA   + RM+  
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDA 364
           GV  ++ T + +L+AC++  AL+ GK +  + S+ G   D+            CG +  A
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F  MP  + +SWNA+I+  A      EA+ L+++M  EG   +P  VTF+ +LSAC 
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG--VKPGRVTFLHLLSACA 442

Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           ++    +G+ +  D++ S  G+       + ++++Y R G L EA +  E
Sbjct: 443 NSSAYADGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 216/401 (53%), Gaps = 15/401 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D  TY  +  +C     L     +H+ + + G+  D  +S+ LI MY +C  +  A +VF
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
            E+  RD++SWNS+IS Y++ G+ K+A +LF  M+   F+P++IT +S+L +C    +L 
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            GK +   ++K     +  + ++L+ MYGKCG L  AR+VF  +  +DVV++N M+  YA
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI- 356
           Q     E + LF +M   G++PDK+T I +L A  +   LD GK + K   + GL  DI 
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 357 ----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CG +D A + F+ +   + V +NA+I+ALA +G   EA   + RM  +G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
            A   N  T++ +L+AC  +  ++ G+ +   +S   G     +  + ++ +YAR G L 
Sbjct: 326 VAL--NRTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLP 382

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           +A +    MP++ D I   A++    ++++   + R+ + +
Sbjct: 383 KARELFYTMPKR-DLISWNAIIAGYARREDRGEAMRLYKQM 422


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/564 (33%), Positives = 299/564 (53%), Gaps = 57/564 (10%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFH-------QI 78
           KL+S    C   K  +++   M    +   NF++     + DF  +  LF        + 
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 79  SRPNEYAF--------------NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
            RP E AF              N MI G  +        L +Y QM  LG+  D  T   
Sbjct: 199 KRP-ESAFELFDKLCDRDVISWNSMISGYVSNGLT-ERGLGIYKQMMYLGIDVDLATIIS 256

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           V + CAN   L+ G +VHS   K   +   + S++L+ MY++CG LD A +VF+++ ER+
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +VSW SMI+GY++ G +  A++L  +M +E    D + + S+L +C   G L  GK V  
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 376

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           ++  N M+ N ++ +AL+DMY KCG++  A  VF  MV KD+++WN MI           
Sbjct: 377 YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------- 425

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--------- 355
                       + PD  T+  VL ACAS+ AL+ GK +  Y  + G   D         
Sbjct: 426 ----------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVD 475

Query: 356 --IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
             + CG +  A  +F+ +P  + VSW  MI+    +G  +EA+  F  M   G    P++
Sbjct: 476 LYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG--IEPDE 533

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           V+FI +L AC H+GL+++G R F +M + F + PK EHY+CMVDL +R G+LS+A++F+E
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIE 593

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            +P   D  + GALL  C+   + +++++V + + E+E  NSG YV+ + I+A  + W++
Sbjct: 594 TLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEE 653

Query: 534 SAKMRALMREKGVSKTPGCSWIGI 557
             ++R  + ++G+ K PGCSWI I
Sbjct: 654 VKRLREKIGKQGLRKNPGCSWIEI 677



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 183/420 (43%), Gaps = 86/420 (20%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  V   CA L +   G  VHS +    +  D+ +   L++ YA CG L   R+VFD +
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELF---------GRMREEEF-LPDEI--------- 221
            ++++  WN M+S Y+K+G  KE++ LF         G+  E  F L D++         
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 222 --------------------------------TLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
                                           T++SVL  C + G L LGK V    +K+
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +      + L+DMY KCG L  A RVF+ M  ++VV+W +MI  Y ++G S+ AI L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M+  GV  D + +  +L ACA  G+LD GK V  Y     +  ++F           C
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS++ A  VF  M V + +SWN MI                       G  +P+  T   
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMI-----------------------GELKPDSRTMAC 437

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC     ++ G+ +   +  + G        + +VDLY + G L  A    + +P K
Sbjct: 438 VLPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 164/380 (43%), Gaps = 72/380 (18%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +  +  +N+ I  + ++G  + A+EL    ++ E   +  T  SVL  C  L     GK 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTDGKK 120

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
           V   +  N + ++  +G  L+  Y  CG L   RRVFD M                    
Sbjct: 121 VHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 282 -------------------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                                           ++DV++WN+MI+ Y  NGL+   + ++ 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M Y G++ D  T+I VL  CA+ G L LGK V   A +      I            CG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 300

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D AL+VFE M   N VSW +MI+    +GR+  A+ L ++M KEG   + + V    +
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG--VKLDVVAITSI 358

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPE 477
           L AC  +G +D G+ + D + ++     +S  + C  ++D+YA+ G +  A      M  
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANN---MESNLFVCNALMDMYAKCGSMEAANSVFSTMVV 415

Query: 478 KVDEIVLGALLGACQKQKNT 497
           K D I    ++G  +    T
Sbjct: 416 K-DIISWNTMIGELKPDSRT 434


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 257/456 (56%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L+PD   Y  +   C  L  L  G  VH  V       D  + +SL+ MYARCG L+ AR
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           ++FDE+  RD+VSW SMI+GY++   A +A+ LF RM  +   P+E TL S++  CG + 
Sbjct: 130 RLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA 189

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
               G+ +     K     N ++GS+L+DMY +CG L  A  VFD +  K+ V+WNA+I 
Sbjct: 190 SYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIA 249

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK--------- 345
            YA+ G   EA+ LF RM+  G  P + T   +LS+C+S+G L+ GKW+           
Sbjct: 250 GYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKL 309

Query: 346 --YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             Y     L      GSI DA KVF+ +   + VS N+M+   A +G   EA   F+ M 
Sbjct: 310 VGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMI 369

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G    PND+TF+ VL+AC HA L+DEG+  F LM   + + PK  HY+ +VDL  RAG
Sbjct: 370 RFG--IEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAG 426

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L +A  F+E MP +    + GALLGA +  KNT++     Q + E++ S  G + + + 
Sbjct: 427 LLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLAN 486

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+   W+D AK+R +M++ GV K P CSW+ +++
Sbjct: 487 IYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVEN 522



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 198/376 (52%), Gaps = 20/376 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQML-INFIQK---PNFLLIRIIDLKDFNYASLLFHQISRP 81
           +LLK+C     +++   +H  +L  NF       N LL           A  LF ++   
Sbjct: 79  TLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHR 138

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  MI G      + S +L L+ +M   G +P+ FT   +   C  + + N G  +
Sbjct: 139 DMVSWTSMITGYAQN-DRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQI 197

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+  +K G   +  V  SL+ MYARCG L  A  VFD++  ++ VSWN++I+GY++ G  
Sbjct: 198 HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEG 257

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+ LF RM+ E + P E T  ++L SC  +G L  GKW+   ++K+   L  Y+G+ L
Sbjct: 258 EEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTL 317

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY K G++  A +VFD +V  DVV+ N+M+  YAQ+GL  EA   F+ M   G+ P+ 
Sbjct: 318 LHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPND 377

Query: 322 ITLIGVLSACASIGALDLGK----WVDKYASQRGLRH-----DIF--CGSIDDALKVFED 370
           IT + VL+AC+    LD GK     + KY  +  + H     D+    G +D A    E+
Sbjct: 378 ITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEE 437

Query: 371 MPVTNEVS-WNAMISA 385
           MP+   V+ W A++ A
Sbjct: 438 MPIEPTVAIWGALLGA 453



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 15/200 (7%)

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           S   + + + +    + PD+     +L  C  +G L  GK V  +      +HD+     
Sbjct: 55  SKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNS 114

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CGS++ A ++F++MP  + VSW +MI+  A N RA +ALLLF RM  +G  A 
Sbjct: 115 LLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDG--AE 172

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN+ T   ++  C +    + GR++       +G        S +VD+YAR G+L EA  
Sbjct: 173 PNEFTLSSLVKCCGYMASYNCGRQI-HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAML 231

Query: 471 FVERMPEKVDEIVLGALLGA 490
             +++  K +E+   AL+  
Sbjct: 232 VFDKLGCK-NEVSWNALIAG 250


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 271/470 (57%), Gaps = 16/470 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+L+ +M+  G +P++ +      +C+ LL L  G  +H    K G + D++V+ +L+ 
Sbjct: 192 ALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVD 251

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +C  L+ AR+VF ++  + LV+WNSMI GY   G +K  VE+  RM  E   P + T
Sbjct: 252 MYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTT 311

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L S+L +C    +L+ GK++ G+V+++ ++ + Y+  +LID+Y KCG    A  VF +  
Sbjct: 312 LTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVF-SKT 370

Query: 283 NKDVV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
            KDV  +WN MI++Y   G   +A+ ++++M   GV PD +T   VL AC+ + AL+ GK
Sbjct: 371 QKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGK 430

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +    S+  L  D             CG+  +A ++F  +P  + VSW  MISA   +G
Sbjct: 431 QIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHG 490

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +  EAL  F+ M K G   +P+ VT + VLSAC HAGL+DEG + F  M S +G+ P  E
Sbjct: 491 QPREALYQFDEMQKFG--LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIE 548

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLE 509
           HYSCM+D+  RAG L EA++ +++ PE  D   +L  L  AC       +  R+ +LL+E
Sbjct: 549 HYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVE 608

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
               ++  Y++   ++A+ + WD + ++R  M+E G+ K PGCSWI + D
Sbjct: 609 NYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSD 658



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 248/474 (52%), Gaps = 25/474 (5%)

Query: 26  KLLSLLKKCP-STKTVQQI---HTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQ 77
           KLLSLL++C  STK++++I   H ++L   +++   L   +I++    KD   A  +F  
Sbjct: 5   KLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFEN 64

Query: 78  IS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLAL 135
              R + Y +N ++ G +     +  +L+++ ++    +  PD+FT+P V  +   L   
Sbjct: 65  FDIRSDVYIWNSLMSGYSKN-SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGRE 123

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H+ V K G   D  V+ SL+ MYA+    +++ +VFDE+ ERD+ SWN++IS +
Sbjct: 124 FLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCF 183

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            + G A++A+ELFGRM    F P+ ++L   + +C  L  L  GK +    VK   +L+ 
Sbjct: 184 YQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDE 243

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           Y+ SAL+DMYGKC  L  AR VF  M  K +V WN+MI  Y   G S   + + NRM   
Sbjct: 244 YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           G  P + TL  +L AC+    L  GK++  Y  +  +  DI+           CG  + A
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLA 363

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF         SWN MIS+    G   +A+ ++++M   G   +P+ VTF  VL AC 
Sbjct: 364 ETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVG--VKPDVVTFTSVLPACS 421

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
               +++G+++   +S S  L       S ++D+Y++ G+  EA+     +P+K
Sbjct: 422 QLAALEKGKQIHLSISES-RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK 474


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/466 (39%), Positives = 265/466 (56%), Gaps = 15/466 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L LY +M+  G+ PD++TYP V  +CA       G +VH    +  LD D  V  +LI 
Sbjct: 105 ALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLIA 164

Query: 163 MYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           MY + G++  A  VF E     R +VSW +M++GY +  +  EA+ LF  M  E  LP+E
Sbjct: 165 MYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNE 224

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           ITL+S L        L  G+ V GFV+++  D N  + +ALI MYGKCG++  A  +F+ 
Sbjct: 225 ITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALFEG 284

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  + +V+WN M+  Y Q+G   EAI  F+RM    V  D +TL+ VLSAC   GAL+ G
Sbjct: 285 MAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRSGALETG 344

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           KWV ++A   GL  D             CG I DA KVF+ + V   VSW+AMISA A +
Sbjct: 345 KWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVSWSAMISAYANH 404

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G + EAL LF  M  EG   RPN  TF  VL AC H+GLV+EG + F+ + S + + P  
Sbjct: 405 GDSEEALKLFCLMKSEG--VRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDYQMSPTL 462

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+C+VD+  RAG L EA++ +  M    D+ V GA LG C+   N ++++ V + L +
Sbjct: 463 EHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVAKDLFQ 522

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             S++   YV+ S ++    M +D+ ++R  M+E  + KT G S +
Sbjct: 523 SGSNDVTFYVLMSNMYFEAGMLEDAERIRRAMKEMELKKTAGHSAV 568



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 185/351 (52%), Gaps = 20/351 (5%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA-LNHGVSVHSSVFKIGLDEDDHVSH 158
           +  +L L+  M   G+ P+  T    F+ C      L+ G  VH  V + G D +  +++
Sbjct: 205 FGEALALFSTMVAEGVLPNEITL-ISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLAN 263

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           +LI MY +CG +  A  +F+ +  R LVSWN+M++ Y + G   EA++ F RM  E+   
Sbjct: 264 ALIAMYGKCGSIPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGF 323

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D +TLVSVL +CG  G L  GKWV  F   + +D +  +G+ L+DMY KCG +  AR+VF
Sbjct: 324 DCVTLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVF 383

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  + VV+W+AMI+AYA +G S EA+ LF  MK  GV P+  T   VL AC   G ++
Sbjct: 384 DCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVN 443

Query: 339 LG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVT-NEVSWNAMISA 385
            G       +  Y     L H     D+    G + +A ++   M +  ++  W A +  
Sbjct: 444 EGLKHFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPDKCVWGAFLGG 503

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGLVDEGRRL 435
                + H  L L E ++K+   +  NDVTF  ++S     AG++++  R+
Sbjct: 504 C----KLHSNLELAEFVAKDLFQSGSNDVTFYVLMSNMYFEAGMLEDAERI 550



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 123/292 (42%), Gaps = 56/292 (19%)

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN--------EAIMLFNRMKYAGVNPD 320
            +L  ARRVFDA   +D   WN ++ A+A +   +        +A+ L+ RM+ AGV PD
Sbjct: 61  ASLAYARRVFDAAPVRDAYMWNTLLRAHAHSHSHSQSSHSHAVDALALYKRMRAAGVAPD 120

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFE 369
             T   VL ACA+     LG+ V   A +  L  D F            G + DA  VF 
Sbjct: 121 HYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLIAMYFQEGEVADAELVFA 180

Query: 370 DMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           +   ++   VSW AM++    N    EAL LF  M  EG    PN++T I  L       
Sbjct: 181 ESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEG--VLPNEITLISFLPCLQGQE 238

Query: 428 LVDEG--------RRLFD----------LMSSSFGLIPKSE------------HYSCMVD 457
            +D G        R  FD           M    G IP +E             ++ MV 
Sbjct: 239 WLDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALFEGMAVRSLVSWNTMVA 298

Query: 458 LYARAGHLSEAWDFVERM-PEKV--DEIVLGALLGACQKQKNTDVSQRVMQL 506
           +Y + G + EA  F  RM  EKV  D + L ++L AC +    +  + V + 
Sbjct: 299 IYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRSGALETGKWVHEF 350


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/505 (34%), Positives = 272/505 (53%), Gaps = 49/505 (9%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           +  +L  Y QM   G++PD FTYP V  +C   L +  G  +H+S+    L  +  V +S
Sbjct: 175 HGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNS 234

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE----- 214
           L++MYA+ G+L +AR +F+ + ERD VSWN+MISGY+  G  KEA ELFG+MR E     
Sbjct: 235 LVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELN 294

Query: 215 ---------------------EFLP---------DEITLVSVLGSCGDLGDLVLGKWVEG 244
                                E L          D +  +  LG+C  +G + LG+ + G
Sbjct: 295 IITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHG 354

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
             +++  D    + +ALI MY +C  L  A  +F +   K+++TWN+M++ Y     S E
Sbjct: 355 SAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEE 414

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A  LF  M  +G+ P+ +T+  +L  CA +  L  GK    Y  +R    D         
Sbjct: 415 ASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLV 474

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                 G + +A ++F+ +   +EV++ ++I+     G   EAL LF+ M K     +P+
Sbjct: 475 DMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKR--HIKPD 532

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            VT + VLSAC H+GLV EG +LF+LM S++G+IP+ EH++CMVDL+ RAG L +A + +
Sbjct: 533 HVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMI 592

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
            RMP +    +   LLGAC+   N ++ +   + LLE+   NSG YV+ + ++A    W 
Sbjct: 593 TRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWS 652

Query: 533 DSAKMRALMREKGVSKTPGCSWIGI 557
             AK+R  MR+ GV K PGC+W+ +
Sbjct: 653 KLAKVRTYMRDLGVRKAPGCAWVDV 677


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 269/459 (58%), Gaps = 13/459 (2%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           +M  LG +     Y  +  +C +  AL  G  VH+ + K       ++   L+  Y +C 
Sbjct: 42  EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 101

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            L+ ARKV DE+ E+++VSW +MIS YS+ G++ EA+ +F  M   +  P+E T  +VL 
Sbjct: 102 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLT 161

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           SC     L LGK + G +VK   D + ++GS+L+DMY K G +  AR +F+ +  +DVV+
Sbjct: 162 SCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVS 221

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
             A+I  YAQ GL  EA+ +F+R+   G++P+ +T   +L+A + +  LD GK    +  
Sbjct: 222 CTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVL 281

Query: 349 QRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +R L           D++  CG++  A ++F++MP    +SWNAM+   + +G   E L 
Sbjct: 282 RRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 341

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMV 456
           LF R+ ++    +P+ VT + VLS C H  + D G  +FD +++  +G  P +EHY C+V
Sbjct: 342 LF-RLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIV 400

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D+  RAG + EA++F++RMP K    VLG+LLGAC+   + D+ + V + L+EIE  N+G
Sbjct: 401 DMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAG 460

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           NYVI S ++A+   W D   +RA+M +K V+K PG SWI
Sbjct: 461 NYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWI 499



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 222/462 (48%), Gaps = 42/462 (9%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRP 81
           +LL  C   + +   Q++H  M+        +L  R++           A  +  ++   
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI   +      S +L ++ +M R   KP+ FT+  V  SC     L  G  +
Sbjct: 117 NVVSWTAMISRYSQTGHS-SEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI 175

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + K   D    V  SL+ MYA+ G++  AR++F+ + ERD+VS  ++I+GY+++G  
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLD 235

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+E+F R+  E   P+ +T  S+L +   L  L  GK     V++ ++     + ++L
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-YAGVNPD 320
           IDMY KCG L  ARR+FD M  +  ++WNAM+  Y+++GL  E + LF  M+    V PD
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            +TL+ VLS C+       G+  D      GL  +IF G +      +   P T    + 
Sbjct: 356 AVTLLAVLSGCSH------GRMEDT-----GL--NIFDGMVAGE---YGTKPGTEH--YG 397

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GRRLF 436
            ++  L   GR  EA    +RM      ++P       +L AC VH  + + E  GRRL 
Sbjct: 398 CIVDMLGRAGRIDEAFEFIKRM-----PSKPTAGVLGSLLGACRVHLSVDIGESVGRRLI 452

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           ++   + G      +Y  + +LYA AG  ++  +    M +K
Sbjct: 453 EIEPENAG------NYVILSNLYASAGRWADVNNVRAMMMQK 488


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 259/454 (57%), Gaps = 14/454 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           DN++      + A + ++  G  +H+   K+GL  D  V ++LI MY+ C    +AR V 
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151

Query: 178 DEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           D   +   D VSWN++I+GY   G   +A++ F +M + + + D++TL++ L +C     
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +GK     +V N  ++N YMGS+LI MY KCG +  ARR+FD M +++ V W +MI+ 
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y Q G S EAI LF  M+ AGV  D  T+  V+S+C  +GALDLG++V  Y    GL  D
Sbjct: 272 YTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKD 331

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           I            CG I  A  +F  M   +  SW  +I   A NG + EAL LF +M +
Sbjct: 332 ISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEE 391

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           EGG   PN++TF+GVL++C H GLV++G R F  MSS +G+ P+ EHY CMVDL  RA  
Sbjct: 392 EGG-VMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKL 450

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L+EA  F++ MP   D ++  +LL AC+      +++ V + +  +E +  G  V+ S +
Sbjct: 451 LAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDVLLSTV 510

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +A    W D+ K+R  +     +K PGCS+I +D
Sbjct: 511 YATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVD 544


>gi|356534299|ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 634

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 299/567 (52%), Gaps = 36/567 (6%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           DP+     L +LL+       + QIH ++      + N +  R+I       A  +FH +
Sbjct: 35  DPT----NLATLLQGNIPRSHLLQIHARIFYLGAHQDNLIATRLIGHYPSRAALRVFHHL 90

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
             PN + FN +IR L      + H+L ++  +KR  L P++ T+ F+F  C     + + 
Sbjct: 91  QNPNIFPFNAIIRVLAQDGH-FFHALSVFNYLKRRSLSPNDLTFSFLFKPCFRTKDVRYV 149

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYAR-CGKLDSARKVFDEIRERDLVS-WNSMISGYS 196
             +H+ + KIG   D  V + L+++YA+    L SARKVFDEI ++ LVS W ++I+G++
Sbjct: 150 EQIHAHIQKIGFLSDPFVCNGLVSVYAKGFNSLVSARKVFDEIPDKMLVSCWTNLITGFA 209

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV------VKNK 250
           + G+++E ++LF  M  +  LP   T+VSVL +C  L    + KWV  F+      V  +
Sbjct: 210 QSGHSEEVLQLFQVMVRQNLLPQSDTMVSVLSACSSLEMPKIEKWVNVFLELVGDGVSTR 269

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIM 307
              +  + + L+ ++GK G +  +R  FD +       VV WNAMI AY QNG   E + 
Sbjct: 270 ETCHDSVNTVLVYLFGKWGRIEKSRENFDRISTSGKSSVVPWNAMINAYVQNGCPVEGLN 329

Query: 308 LFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
           LF  M +     P+ IT++ VLSACA IG L  G WV  Y    G RH I          
Sbjct: 330 LFRMMVEEETTRPNHITMVSVLSACAQIGDLSFGSWVHGYLISLGHRHTIGSNQILATSL 389

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG++D A KVFE     + V +NAMI  LA  G+  +AL LF ++ + G   +P
Sbjct: 390 IDMYSKCGNLDKAKKVFEHTVSKDVVLFNAMIMGLAVYGKGEDALRLFYKIPEFG--LQP 447

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           N  TF+G LSAC H+GL+  GR++F     +       EH +C +DL AR G + EA + 
Sbjct: 448 NAGTFLGALSACSHSGLLVRGRQIFR--ELTLSTTLTLEHCACYIDLLARVGCIEEAIEV 505

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           V  MP K +  V GALLG C      +++Q V + L+E++  NS  YV+ +   A+   W
Sbjct: 506 VTSMPFKPNNFVWGALLGGCLLHSRVELAQEVSRRLVEVDPDNSAGYVMLANALASDNQW 565

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGID 558
            D + +R  M+EKGV K PG SWI +D
Sbjct: 566 SDVSGLRLEMKEKGVKKQPGSSWIIVD 592


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 281/499 (56%), Gaps = 20/499 (4%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD---NFTYPFVFISCAN 131
           F+ I +    +F   I  L    Q + HSL  +         P    ++ Y  +  SC +
Sbjct: 3   FYSIKKTQHTSF---IFNLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCID 59

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
             ALN G  +H+  + +G+  +  ++  L+ +YA    L +AR +FD+I +++L  WN +
Sbjct: 60  SKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVL 119

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I GY+  G    A+ L+ +M +    PD  TL  VL +C  L  +  G+ +  +V+K+  
Sbjct: 120 IRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGW 179

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           + + ++G+ALIDMY KCG ++ A RVFD +V +D V WN+M+ AYAQNG  +E+I L   
Sbjct: 180 ERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCRE 239

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGS 360
           M   GV P + TL+ V+S+ A +  L  G+ +  +  + G +          D++  CGS
Sbjct: 240 MAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGS 299

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +  AL +FE +     VSWNA+I+  A +G A  AL LF++M KE    RP+ +TF+GVL
Sbjct: 300 VKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED---RPDHITFVGVL 356

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           +AC    L+DEGR L++LM   +G+ P  +HY+CM+DL    G L EA+D +  M  K D
Sbjct: 357 AACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPD 416

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             V GALL +C+   N ++++  ++ L+E+E  +SGNYVI + ++A    W+   K+R +
Sbjct: 417 SGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQV 476

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M +K + K   CSWI + +
Sbjct: 477 MIDKRIKKNIACSWIEVKN 495



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/395 (35%), Positives = 219/395 (55%), Gaps = 24/395 (6%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL----LFHQISRP 81
           SLL+ C  +K +   +Q+H Q     I     L  +++ L   + + L    LF +I + 
Sbjct: 52  SLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQ 111

Query: 82  NEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           N + +NV+IRG   AW   + +++ LY++M   GL+PDNFT PFV  +C+ L A+  G S
Sbjct: 112 NLFLWNVLIRGY--AWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V K G + D  V  +LI MYA+CG +  A +VFD+I  RD V WNSM++ Y++ G+
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             E++ L   M      P E TLV+V+ S  D+  L  G+ + GF  ++    N  + +A
Sbjct: 230 PDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTA 289

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KCG++  A  +F+ +  K VV+WNA+IT YA +GL+  A+ LF++M+     PD
Sbjct: 290 LIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPD 348

Query: 321 KITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CGSIDDALKVF 368
            IT +GVL+AC+    LD G+      V  Y     ++H     D+   CG +D+A  + 
Sbjct: 349 HITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLI 408

Query: 369 EDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
            +M V  +   W A++++   +G    A L  E++
Sbjct: 409 RNMSVKPDSGVWGALLNSCKIHGNVELAELALEKL 443


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 275/497 (55%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F+ +  P   ++N +I G     Q    +L+++  ++R  L  D  +      +C+ + 
Sbjct: 296 VFNTLPNPPRQSYNAIIVGYARQDQGLK-ALEIFQSLQRTYLSFDEISLSGALTACSVIK 354

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G+ +H    K GL  +  V+++++ MY +CG L  A  +FD++  RD VSWN++I+
Sbjct: 355 GHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIA 414

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            + +     + + LF  M      PD+ T  SV+ +C     L  G  + G +VK+ M L
Sbjct: 415 AHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGL 474

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           ++++GSAL+DMYGKCG L+ A ++ D +  K  V+WN++I+ ++    S  A   F++M 
Sbjct: 475 DWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQML 534

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV PD  T   VL  CA++  ++LGK +     +  L  D++           CG++ 
Sbjct: 535 EMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQ 594

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           D+  +FE  P  + V+W+AMI A A++G   +A+ LFE M       +PN   FI VL A
Sbjct: 595 DSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLN--VKPNHTIFISVLRA 652

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H G VD+G   F +M S +GL P  EHYSCMVDL  R+  ++EA   +E M  + D++
Sbjct: 653 CAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDV 712

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +   LL  C+ Q N +V+++    LL+++  +S  YV+ + ++AN+ MW + AK+R++M+
Sbjct: 713 IWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMK 772

Query: 543 EKGVSKTPGCSWIGIDD 559
              + K PGCSWI + D
Sbjct: 773 NCKLKKEPGCSWIEVRD 789



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 200/399 (50%), Gaps = 31/399 (7%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  + R +  ++N +I       ++   +L L+  M R  ++PD+FTY  V  +CA
Sbjct: 394 ACTIFDDMERRDAVSWNAIIAAHEQN-EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              ALN+G+ +H  + K G+  D  V  +L+ MY +CG L  A K+ D + E+  VSWNS
Sbjct: 453 GQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNS 512

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISG+S    ++ A   F +M E   +PD  T  +VL  C ++  + LGK +   ++K  
Sbjct: 513 IISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLN 572

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + Y+ S L+DMY KCG +  +R +F+    +D VTW+AMI AYA +G   +AI LF 
Sbjct: 573 LHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFE 632

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFE 369
            M+   V P+    I VL ACA +G +D G  +     S  GL         D  ++   
Sbjct: 633 EMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGL---------DPHME--- 680

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
                    ++ M+  L  + + +EAL L E M  E      +DV +  +LS C   G V
Sbjct: 681 --------HYSCMVDLLGRSDQVNEALKLIESMHFEA-----DDVIWRTLLSNCKMQGNV 727

Query: 430 DEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSE 467
           +   + F+   S   L P+ S  Y  + ++YA  G   E
Sbjct: 728 EVAEKAFN---SLLQLDPQDSSAYVLLANVYANVGMWGE 763



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/532 (26%), Positives = 253/532 (47%), Gaps = 58/532 (10%)

Query: 30  LLKKCPSTKTV---QQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +L+KC + K +   +Q H QM++      I   N L+       + NYA  +F ++   +
Sbjct: 12  ILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRD 71

Query: 83  EYAFNVMIRGL--------------------TTAWQK----YSH------SLKLYYQMKR 112
             ++N MI G                       +W      Y H      S++++ +M+ 
Sbjct: 72  VISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRS 131

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           L +  D  T+  V  +C+ +     G+ VH    ++G + D     +L+ MY++C KLD 
Sbjct: 132 LKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDG 191

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A ++F E+ ER+LV W+++I+GY +     E ++LF  M +      + T  SV  SC  
Sbjct: 192 AFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG 251

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L    LG  + G  +K+    +  +G+A +DMY KC  +  A +VF+ + N    ++NA+
Sbjct: 252 LSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAI 311

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YA+     +A+ +F  ++   ++ D+I+L G L+AC+ I     G  +   A + GL
Sbjct: 312 IVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGL 371

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +I            CG++ +A  +F+DM   + VSWNA+I+A   N    + L LF  
Sbjct: 372 GFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDL 458
           M +      P+D T+  V+ AC     ++ G  +   ++ S  GL    + +  S +VD+
Sbjct: 432 MLR--STMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGL----DWFVGSALVDM 485

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           Y + G L EA    +R+ EK   +   +++     QK ++ +QR    +LE+
Sbjct: 486 YGKCGMLMEAEKIHDRLEEKT-TVSWNSIISGFSSQKQSENAQRYFSQMLEM 536



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 216/438 (49%), Gaps = 20/438 (4%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K  + A  +F ++   N   ++ +I G      ++   LKL+  M ++G+     TY  V
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQN-DRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
           F SCA L A   G  +H    K     D  +  + + MYA+C ++  A KVF+ +     
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            S+N++I GY++     +A+E+F  ++      DEI+L   L +C  +   + G  + G 
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGL 365

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            VK  +  N  + + ++DMYGKCGALV A  +FD M  +D V+WNA+I A+ QN    + 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + LF  M  + + PD  T   V+ ACA   AL+ G  +     + G+  D F        
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDM 485

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG + +A K+ + +     VSWN++IS  +   ++  A   F +M + G    P++ 
Sbjct: 486 YGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG--VIPDNF 543

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFV 472
           T+  VL  C +   ++ G+++    +    L   S+ Y  S +VD+Y++ G++ ++    
Sbjct: 544 TYATVLDVCANMATIELGKQIH---AQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 473 ERMPEKVDEIVLGALLGA 490
           E+ P++ D +   A++ A
Sbjct: 601 EKTPKR-DYVTWSAMICA 617



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 192/418 (45%), Gaps = 46/418 (11%)

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           FT+  +   C+NL ALN G   H+ +         +V++ L+  Y +   ++ A KVFD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 180 IRERDLVSWNSMISGYSK---MGYA----------------------------KEAVELF 208
           +  RD++SWN+MI GY++   MG+A                            ++++E+F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            RMR  +   D  T   VL +C  + D  LG  V    ++   + +   GSAL+DMY KC
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
             L  A R+F  M  +++V W+A+I  Y QN    E + LF  M   G+   + T   V 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
            +CA + A  LG  +  +A +    +D             C  + DA KVF  +P     
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           S+NA+I   A   +  +AL +F+ + +       ++++  G L+AC       EG +L  
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRT--YLSFDEISLSGALTACSVIKGHLEGIQLHG 364

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           L +   GL       + ++D+Y + G L EA    + M E+ D +   A++ A ++ +
Sbjct: 365 L-AVKCGLGFNICVANTILDMYGKCGALVEACTIFDDM-ERRDAVSWNAIIAAHEQNE 420



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 132/318 (41%), Gaps = 61/318 (19%)

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           + T   +L  C +L  L  GK     ++        Y+ + L+  Y K   +  A +VFD
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 280 AMVNKDVVTWNAMITAYAQ-------------------------------NGLSNEAIML 308
            M ++DV++WN MI  YA+                               NG++ ++I +
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-------- 360
           F RM+   +  D  T   VL AC+ I    LG  V   A Q G  +D+  GS        
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              +D A ++F +MP  N V W+A+I+    N R  E L LF+ M K G     +  T+ 
Sbjct: 186 CKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS--TYA 243

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDF 471
            V  +C        G   F L +   G   KS+        +  +D+YA+   +S+AW  
Sbjct: 244 SVFRSCA-------GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKV 296

Query: 472 VERMP----EKVDEIVLG 485
              +P    +  + I++G
Sbjct: 297 FNTLPNPPRQSYNAIIVG 314


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 294/560 (52%), Gaps = 76/560 (13%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQIS 79
           ++S+L KC S   ++QIH QM+   +    F + R+I            +YAS +F +I 
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-----GLKPDNFTYPFVFISCANLLA 134
            PN + F  +I+G +        SL LY +M        G++   F+ P V  +C  LLA
Sbjct: 69  HPNSFIFFALIKGFSDT-SNPVESLILYARMLSCLNYSSGVE---FSIPSVLKACGKLLA 124

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
            + G  VH  V K  L  D  V +S++ MY   G+++ AR+VFD +  RD+VSWNSMI+G
Sbjct: 125 FDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAG 184

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y K G  + A ELF  M E + +           SC                        
Sbjct: 185 YLKAGEIELASELFDEMPERDLV-----------SC------------------------ 209

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
               +A+ID YGKCG    A +VF+ M +KDVVTW +MI+AY QN    +A+ LF  M  
Sbjct: 210 ----NAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLS 265

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH----------DIF--CGSID 362
            G+ PD   ++ VLSA A +G ++ GKW+  Y S   +            D++  CG I+
Sbjct: 266 LGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIE 325

Query: 363 DALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLF---ERMSKEGGAARPNDVTFIG 418
           +A  VF  +     +  WN+MIS LA +G A EAL +F   ERM  E     PN++TF+G
Sbjct: 326 NAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIE-----PNEITFLG 380

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +LS C H GLV+EG+  F+ M   + ++P+ +HY CM+DL+ RAG L +A   ++ MP +
Sbjct: 381 LLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFE 440

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D +   A+L A  K  + ++ +      +E+   +S +YV+ S I+A    WDD AK+R
Sbjct: 441 ADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIR 500

Query: 539 ALMREKGVSKTPGCSWIGID 558
            +MR++GV K  GCS + +B
Sbjct: 501 LMMRQRGVKKIAGCSSMLVB 520


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 307/561 (54%), Gaps = 72/561 (12%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLINFIQK--PNFLLIRIIDLK----DFNYASLLF- 75
           K + LL +C +  +++Q   I  Q++ + I    PN + ++ I +     +  ++ L+F 
Sbjct: 23  KTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFN 82

Query: 76  HQISRPNEYAFNVMIRGLT--TAWQKYSHSLKLYYQMKRL---GLKPDNFTYPFVFISCA 130
           H +S PN +A+N +++  +   AW    H+   Y+  + +      PD +T+  V  +CA
Sbjct: 83  HFLSFPNIFAYNALLKAFSQHNAW----HTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  +  G  VH  V K G + +  V +SL+ +Y + G    A+K+FDE+  RD+VSWN+
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNT 198

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISGY   G   +A  +F  M                                       
Sbjct: 199 LISGYCFSGMVDKARMVFDGM--------------------------------------- 219

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           M+ N    S +I  Y + G L  AR++F+ M  ++VV+WNAMI  YAQN    +AI LF 
Sbjct: 220 MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFR 279

Query: 311 RMKY-AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           +M++  G+ P+ +TL+ VLSACA +GALDLGKW+ ++  +  +   +F           C
Sbjct: 280 QMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKC 339

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G + +A  VF +M   + +SW+ +I  LA  G A+EA   F  M ++G    PND++F+G
Sbjct: 340 GCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG--LEPNDISFMG 397

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L+AC HAGLVD+G   FD+M   +G+ PK EHY C+VDL +RAG L +A   +  MP +
Sbjct: 398 LLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQ 457

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + IV GALLG C+  K+ +  +RV+  +LE++S++SG+ V  + ++A++   DD+A  R
Sbjct: 458 PNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCR 517

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
             MR+    KTPGCSWI I++
Sbjct: 518 LRMRDNKSMKTPGCSWIEINN 538


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 285/497 (57%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + R +   +N MI G          +L L+  M++ G++PD+ T   +  +  +L 
Sbjct: 304 LFGLMPRDDLVTWNGMISGCVQN-GFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLN 362

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
             N G  +H  + +  +  D  +  +L+ +Y +C  +  A+ V+D  +  D+V  ++MIS
Sbjct: 363 GFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMIS 422

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY   G ++EAV++F  + E+   P+ + + SVL +C  +  + LG+ +  + +KN  + 
Sbjct: 423 GYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEG 482

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             Y+ SAL+DMY KCG L  +  +F  +  KD VTWN+MI+++AQNG   EA+ LF  M 
Sbjct: 483 RCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMC 542

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV    +T+  VLSACAS+ A+  GK +     +  +R D+F           CG+++
Sbjct: 543 MEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLE 602

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A +VFE MP  NEVSWN++I++    G   E++ L   M +EG  A  + VTF+ ++SA
Sbjct: 603 WAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKA--DHVTFLALVSA 660

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAG V EG RLF  M+  + + P+ EH++CMVDLY+RAG L +A + +  MP K D  
Sbjct: 661 CAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAG 720

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL AC+  +N ++++   Q L +++  NSG YV+ S I A    WD  +K+R LM+
Sbjct: 721 IWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMK 780

Query: 543 EKGVSKTPGCSWIGIDD 559
           +  V K PG SW+ +++
Sbjct: 781 DTKVQKIPGYSWVDVNN 797



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 251/528 (47%), Gaps = 34/528 (6%)

Query: 25  EKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLL-IRIIDL----KDFNYASLLFH 76
            +LL++L+ C S   +    Q+H + +   +   +  L  R++ +    + F  A  +F 
Sbjct: 40  RRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFS 99

Query: 77  QISR---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFVFISCAN 131
            + R        +N +IRGLT A   Y  +L  Y +M        PD+ T+P+V  SCA 
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMA-GDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA 158

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L A+  G  VH +   +GLD D  V  +LI MYA  G L  AR+VFD + ERD V WN M
Sbjct: 159 LGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVM 218

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           + GY K G    AVELFG MR     P+  TL   L       DL  G  +    VK  +
Sbjct: 219 MDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           +    + + L+ MY KC  L    ++F  M   D+VTWN MI+   QNG  ++A++LF  
Sbjct: 279 ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCD 338

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M+ +G+ PD +TL+ +L A   +   + GK +  Y  +  +  D+F           C +
Sbjct: 339 MQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRA 398

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +  A  V++     + V  + MIS    NG + EA+ +F  + ++G   RPN V    VL
Sbjct: 399 VRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG--IRPNAVAIASVL 456

Query: 421 SACVHAGLVDEGRRL--FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            AC     +  G+ L  + L ++  G   +    S ++D+YA+ G L  +     ++  K
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEG---RCYVESALMDMYAKCGRLDLSHYIFSKISAK 513

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
            DE+   +++ +  +    + +  + + +  +E     N  ISS + A
Sbjct: 514 -DEVTWNSMISSFAQNGEPEEALNLFREMC-MEGVKYSNVTISSVLSA 559



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 205/400 (51%), Gaps = 26/400 (6%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
           +++H  ++ N +    FL+  ++D+  F   ++   Q    +  A +V+I   +T    Y
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIY-FKCRAVRMAQSVYDSSKAIDVVIG--STMISGY 424

Query: 101 ------SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
                   ++K++  +   G++P+      V  +CA++ A+  G  +HS   K   +   
Sbjct: 425 VLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRC 484

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  +L+ MYA+CG+LD +  +F +I  +D V+WNSMIS +++ G  +EA+ LF  M  E
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
                 +T+ SVL +C  L  +  GK + G V+K  +  + +  SALIDMYGKCG L  A
Sbjct: 545 GVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            RVF++M  K+ V+WN++I +Y   GL  E++ L   M+  G   D +T + ++SACA  
Sbjct: 605 HRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHA 664

Query: 335 GALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNA 381
           G +  G        ++Y     + H     D++   G +D A+++  DMP   +   W A
Sbjct: 665 GQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           ++ A     R H  + L E  S+E     P++  +  ++S
Sbjct: 725 LLHAC----RVHRNVELAEIASQELFKLDPHNSGYYVLMS 760


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 310/589 (52%), Gaps = 57/589 (9%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
           ++   LLS+L+ C S + + Q+   + ++ +    F   R++      D     +A+ + 
Sbjct: 29  VVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAHAAAVL 88

Query: 76  HQISR-PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            Q +  PN Y    M+RG   A  K +H+L L+ ++ R  L  D  T  F   + A   +
Sbjct: 89  AQCTEGPNAYMLATMMRGFLRA-GKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSS 147

Query: 135 LNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
                ++H   FK G + +     ++L+ MY     L  ARK+FDE+ +RD+VSW ++I 
Sbjct: 148 PTE--AIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLID 205

Query: 194 GYSKMGYAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           GY++ G   EA  +F RM   E   P+E+TLV+   + G +G L LG+ V   +V++   
Sbjct: 206 GYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGR 265

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG------------ 300
           ++  + +AL+DM+GKCG +  A+ VFD M  KDV +W +M++AYA+ G            
Sbjct: 266 MSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEI 325

Query: 301 -------------------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
                              + +EAI +FN M  AGV P   TL+ VLSACA + +LD+G 
Sbjct: 326 PNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGT 385

Query: 342 WV-DKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           W+ D Y     +           D+F  CG +  A ++F +M   N VSWN MI A   +
Sbjct: 386 WLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLH 445

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G+  EAL LF+    +G    P++ T+IGVLSAC H GLV EGR  F  M   +G+ P++
Sbjct: 446 GQPEEALHLFQEF--KGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRA 503

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+CM+DL  + G L EA++    MP   DE   GALL AC+   N ++ +     L  
Sbjct: 504 EHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAG 563

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++ S+SG YV+ S+I+A+   W     +R +MR++ V K PGCS I +D
Sbjct: 564 LDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVD 612


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 308/575 (53%), Gaps = 56/575 (9%)

Query: 29  SLLKKCPSTKTV--------QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           SLL+ C + K++          I TQ     I   N L+   + L     A  +F ++  
Sbjct: 69  SLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPV 128

Query: 81  PNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
            N  ++  MI     A+ ++ H   +L  +Y+M+ +G++P++FT+  +  +C +L  L  
Sbjct: 129 KNVVSWTAMI----AAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE 184

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
               H  + K G + +  V + L+ MYA+ G ++ AR++FD++ +RD+VSWN+MI+GY +
Sbjct: 185 ---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQ 241

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV----------LGKW---VEG 244
            G  ++A++LF  + + + +    T+++    CGD+ + V          L  W   + G
Sbjct: 242 NGLIEDALKLFQEIPKRDVITWN-TMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAG 300

Query: 245 FV----VKNKMDL-------NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           +V    VK    L       N    +A+I  + + G +  A ++F  M   +VV+WNAMI
Sbjct: 301 YVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMI 360

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
             Y+QNG +  A+ LF +M+   + P+  T   VL ACA++  L+ G    +   + G +
Sbjct: 361 AGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQ 420

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D+            CGSI+DA KVF+ M   +  S +AMI   A NG + E+L LFE+M
Sbjct: 421 SDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQM 480

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G   +P+ VTF+GVLSAC HAGLVDEGR+ FD+M+  + + P  EHY CM+DL  RA
Sbjct: 481 QFTG--LKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRA 538

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G   EA D + +MP K D  + G+LL AC+   N D+ ++V Q L+ +   N   YV+ S
Sbjct: 539 GCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLS 598

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            I+A    WDD   +R  M+++ V K  GCSWI I
Sbjct: 599 NIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVI 633



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 219/437 (50%), Gaps = 49/437 (11%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD-EDDHVS 157
           +   +L +   M   G+ P + TY  +   C N  +L     +H+ + +   + +D  + 
Sbjct: 44  RLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLG 103

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           + L+++Y + G L  AR+VFDE+  +++VSW +MI+ Y++  + +EA+  F  M++    
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQ 163

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           P+  T  S+L +C DL   VLG++ +  +VK   + N ++G+ L+DMY K G +  AR +
Sbjct: 164 PNHFTFASILPACTDLE--VLGEFHDE-IVKGGFESNVFVGNGLVDMYAKRGCIEFAREL 220

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD M  +DVV+WNAMI  Y QNGL  +A+ LF  +       D IT   +++  A  G +
Sbjct: 221 FDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDV 276

Query: 338 DLG-KWVDKYASQRGLRHDIFC------GSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           +   +  +K   Q  +  +         GS+ +A K+F+ MP  N +SWNA+IS  A NG
Sbjct: 277 ENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNG 336

Query: 391 RAHEALLLFERM---------------SKEGGAA--------------RPNDVTFIGVLS 421
           +  EAL LF+ M               S+ G A               +PN  TF  VL 
Sbjct: 337 QVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLP 396

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--- 478
           AC    ++++G    +++  S G        + +V +YA+ G + +A    +RM ++   
Sbjct: 397 ACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSA 455

Query: 479 -VDEIVLGALLGACQKQ 494
            +  +++G  +  C K+
Sbjct: 456 SLSAMIVGYAINGCSKE 472



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 26/302 (8%)

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           + ++    K G  +EA+ +   M E    P   T  S+L  C +   L   K +   +++
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 249 NKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
            + +  +  +G+ L+ +Y K G+LV ARRVFD M  K+VV+W AMI AYA++    EA+ 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------- 360
            F  M+  G+ P+  T   +L AC  +    LG++ D+   + G   ++F G+       
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPACTDLEV--LGEFHDEIV-KGGFESNVFVGNGLVDMYA 209

Query: 361 ----IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
               I+ A ++F+ MP  + VSWNAMI+    NG   +AL LF+ + K       + +T+
Sbjct: 210 KRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR------DVITW 263

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
             +++     G V+    LF+ M     L+     ++ M+  Y + G + EA+   + MP
Sbjct: 264 NTMMAGYAQCGDVENAVELFEKMPEQ-NLVS----WNTMIAGYVQNGSVKEAFKLFQIMP 318

Query: 477 EK 478
           E+
Sbjct: 319 ER 320


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 290/500 (58%), Gaps = 14/500 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  + + +   +N MI G          S+ L+ +M   G+KPD+ T+     S A
Sbjct: 165 ARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASM-LFNEMISAGIKPDSITFTSFLPSLA 223

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              +L     +H  + + G+  D +++ +LI +Y +C     A K+F+   + D+V + +
Sbjct: 224 ESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTA 283

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MISGY   G  K+A+E+F  + +++ +P+ +T  S+L +C  L  + LG+ + G+++KN+
Sbjct: 284 MISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNE 343

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           ++    +GSA+++MY KCG L  A  +F  +  KD + WN++IT+++Q+G   EAI LF 
Sbjct: 344 LEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFR 403

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M   GV  D +T+   LSACA+I AL  GK +  +  +     D+F           CG
Sbjct: 404 QMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCG 463

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            ++ A  VF  M   NEV+WN++I+A  ++G   ++L LF  M +EG   +P+ +TF+ +
Sbjct: 464 KLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEG--IQPDHITFLTI 521

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LS+C HAG V++G R F  M+  +G+  + EHY+CM DL+ RAGHL EA++ +  MP   
Sbjct: 522 LSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPP 581

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
              V G LLGAC+   N ++++   + LL++E  NSG Y++ + + A+   W    K++ 
Sbjct: 582 AASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQH 641

Query: 540 LMREKGVSKTPGCSWIGIDD 559
           LM+E+GV K PGCSWI +++
Sbjct: 642 LMKERGVQKVPGCSWIEVNN 661



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 222/420 (52%), Gaps = 24/420 (5%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF-ISCANLLALNHGVSVHSS 144
           +NVMI G     +  S ++KL+  M     KPD+ T+  V  ISC+  + + +G  +H  
Sbjct: 79  WNVMINGYVQCGESDS-AIKLFKDMMSSEAKPDSVTFACVLSISCSEAM-VEYGRQLHGL 136

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V + GLD    V ++L+T+Y++  +L  ARK+FD + + DLV WN MI GY + G+  +A
Sbjct: 137 VVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDA 196

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
             LF  M      PD IT  S L S  +   L   K + G++V++ + L+ Y+ SALID+
Sbjct: 197 SMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDL 256

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KC   V A ++F+     D+V + AMI+ Y  NG++ +A+ +F  +    + P+ +T 
Sbjct: 257 YFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTF 316

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
             +L ACA + A+ LG+ +  Y  +  L                CG +D A  +F  + +
Sbjct: 317 SSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISI 376

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + + WN++I++ + +G+  EA+ LF +M  EG   + + VT    LSAC +   +  G+
Sbjct: 377 KDAICWNSIITSFSQDGKPEEAIYLFRQMGMEG--VKYDCVTVSAALSACANIPALHYGK 434

Query: 434 RLFDLM-SSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            +   M   +F    +S+ +  S ++++YA+ G L+ A      M EK +E+   +++ A
Sbjct: 435 EIHGFMIKGAF----ESDLFDMSALINMYAKCGKLNIARLVFNLMQEK-NEVAWNSIIAA 489



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 183/370 (49%), Gaps = 14/370 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M   G+ PD +T+P V   C  L  +  G  +   + ++G D D  V+ SLI +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           ++ AR+ FD++ ++D V WN MI+GY + G +  A++LF  M   E  PD +T   VL  
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
                 +  G+ + G VV++ +D    +G+ L+ +Y K   L  AR++FD M   D+V W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           N MI  Y QNG  ++A MLFN M  AG+ PD IT    L + A   +L   K +  Y  +
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR 240

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            G+  D++           C     A K+F      + V + AMIS    NG   +AL +
Sbjct: 241 HGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  + ++     PN +TF  +L AC     +  GR L   +  +  L  K    S ++++
Sbjct: 301 FRWLLQK--KMIPNALTFSSILPACAGLAAIKLGRELHGYIIKN-ELEEKCPVGSAIMNM 357

Query: 459 YARAGHLSEA 468
           YA+ G L  A
Sbjct: 358 YAKCGRLDLA 367



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 18/392 (4%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+     L  L +  S K +++IH  ++ + +    +L   +IDL    +D   A  +F+
Sbjct: 212 SITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFN 271

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
             ++ +   +  MI G          +L+++  + +  + P+  T+  +  +CA L A+ 
Sbjct: 272 LSTKFDIVIYTAMISGYVLNGMN-KDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIK 330

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  + K  L+E   V  +++ MYA+CG+LD A  +F  I  +D + WNS+I+ +S
Sbjct: 331 LGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFS 390

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  +EA+ LF +M  E    D +T+ + L +C ++  L  GK + GF++K   + + +
Sbjct: 391 QDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLF 450

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             SALI+MY KCG L  AR VF+ M  K+ V WN++I AY  +G   +++ LF+ M   G
Sbjct: 451 DMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEG 510

Query: 317 VNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CGSIDDA 364
           + PD IT + +LS+C   G ++ G        ++Y     + H     D+F   G +D+A
Sbjct: 511 IQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEA 570

Query: 365 LKVFEDMPVTNEVS-WNAMISALAFNGRAHEA 395
            +V   MP     S W  ++ A   +G    A
Sbjct: 571 FEVITSMPFPPAASVWGTLLGACRVHGNVELA 602


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 282/498 (56%), Gaps = 16/498 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYY-QMKRLGLKPDNFTYPFVFISCANL 132
           +F ++   N  ++  +I GL  A   Y+    LY+ +M R  +  D+ T+     + A+ 
Sbjct: 181 VFEKMMTRNVVSWTAIIAGLVHA--GYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADS 238

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
             L+HG ++H+   K G DE   V ++L TMY +CGK D   ++F+++R  D+VSW ++I
Sbjct: 239 SLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLI 298

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           S Y +MG  + AVE F RMR+    P++ T  +V+ SC +L     G+ + G V++  + 
Sbjct: 299 STYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLV 358

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
               + +++I +Y KCG L  A  VF  +  KD+++W+ +I+ Y+Q G + EA    + M
Sbjct: 359 NALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWM 418

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +  G  P++  L  VLS C S+  L+ GK V  +    G+ H+             CGS+
Sbjct: 419 RREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSV 478

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            +A K+F  M + + +SW AMI+  A +G + EA+ LFE++S  G   +P+ V FIGVL+
Sbjct: 479 QEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVG--LKPDYVMFIGVLT 536

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAG+VD G   F LM++ + + P  EHY C++DL  RAG LSEA   +  MP   D+
Sbjct: 537 ACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDD 596

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
           +V   LL AC+   + D  +   + LL+++ +++G ++  + I+A    W ++A +R LM
Sbjct: 597 VVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLM 656

Query: 542 REKGVSKTPGCSWIGIDD 559
           + KGV K  G SW+ ++D
Sbjct: 657 KSKGVIKERGWSWVNVND 674



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 243/496 (48%), Gaps = 48/496 (9%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKDF----NYASLLFHQISRPNEYAFNVMIRGLTTA 96
           + IHTQ +     + +F++  +  + +     +Y   LF ++  P+  ++  +I      
Sbjct: 245 KAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQM 304

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            ++  H+++ + +M++  + P+ +T+  V  SCANL A   G  +H  V ++GL     V
Sbjct: 305 GEE-EHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSV 363

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           ++S+IT+Y++CG L SA  VF  I  +D++SW+++IS YS+ GYAKEA +    MR E  
Sbjct: 364 ANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGP 423

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            P+E  L SVL  CG +  L  GK V   ++   +D    + SA+I MY KCG++  A +
Sbjct: 424 KPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASK 483

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F+ M   D+++W AMI  YA++G S EAI LF ++   G+ PD +  IGVL+AC   G 
Sbjct: 484 IFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGM 543

Query: 337 LDLGKW----------VDKYASQRGLRHDIFC--GSIDDALKVFEDMPV-TNEVSWNAMI 383
           +DLG +          +       G   D+ C  G + +A  +   MP  T++V W+ ++
Sbjct: 544 VDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLL 603

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
            A   +G         E++ +    +    +T   + +A    G   E   +  LM S  
Sbjct: 604 RACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAA---KGRWKEAAHIRKLMKSK- 659

Query: 444 GLI------------------------PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           G+I                        P+SEH + ++ L   + ++ +A   +  + E V
Sbjct: 660 GVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVLKLL--SANIGDAQQEIRSLHEDV 717

Query: 480 DEIVLGALLGACQKQK 495
           +++    +L     +K
Sbjct: 718 EDLAYSCILSHGNARK 733



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 204/425 (48%), Gaps = 18/425 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F +++  +E ++  +I G   A   Y  +L L+  M    G + D F       +C
Sbjct: 76  ARYMFDKMTHRDEISWTTLIAGYVNASDSYE-ALILFSNMWVHPGPQRDQFMISVALKAC 134

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A  + +  G  +H    K GL     VS +LI MY + GK++   +VF+++  R++VSW 
Sbjct: 135 ALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWT 194

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I+G    GY  E +  F  M   +   D  T    L +  D   L  GK +    +K 
Sbjct: 195 AIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQ 254

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             D + ++ + L  MY KCG      R+F+ M   DVV+W  +I+ Y Q G    A+  F
Sbjct: 255 GFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAF 314

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            RM+ + V+P+K T   V+S+CA++ A   G+ +  +  + GL + +            C
Sbjct: 315 KRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKC 374

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G +  A  VF  +   + +SW+ +IS  +  G A EA      M +EG   +PN+     
Sbjct: 375 GLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREG--PKPNEFALSS 432

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLS C    L+++G+++   +    G+  ++  +S ++ +Y++ G + EA      M  K
Sbjct: 433 VLSVCGSMALLEQGKQVHAHL-LCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGM--K 489

Query: 479 VDEIV 483
           +++I+
Sbjct: 490 INDII 494



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 186/424 (43%), Gaps = 61/424 (14%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV- 226
           G+L  AR +FD++  RD +SW ++I+GY     + EA+ LF  M        +  ++SV 
Sbjct: 71  GQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVA 130

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +C    ++  G+ + GF VK+ +  + ++ SALIDMY K G +    RVF+ M+ ++V
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNV 190

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           V+W A+I      G + E ++ F+ M  + V  D  T    L A A    L  GK +   
Sbjct: 191 VSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQ 250

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
             ++G     F           CG  D  +++FE M + + VSW  +IS     G    A
Sbjct: 251 TIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHA 310

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD------------------ 437
           +  F+RM K      PN  TF  V+S+C +      G ++                    
Sbjct: 311 VEAFKRMRKS--YVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSII 368

Query: 438 LMSSSFGLIPKSE------------HYSCMVDLYARAGHLSEAWDFV---ERMPEKVDEI 482
            + S  GL+  +              +S ++ +Y++ G+  EA+D++    R   K +E 
Sbjct: 369 TLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEF 428

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIE--------------SSNSGNYVISSKIFANL 528
            L ++L  C      +  ++V   LL I                S  G+   +SKIF  +
Sbjct: 429 ALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGM 488

Query: 529 KMWD 532
           K+ D
Sbjct: 489 KIND 492


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 169/472 (35%), Positives = 266/472 (56%), Gaps = 13/472 (2%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L++   M    LKP   T   V  + + L  +  G  +H    + G D   +++ +L+ 
Sbjct: 220 ALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+CG L +AR +FD + ER++VSWNSMI  Y +    KEA+ +F +M +E   P +++
Sbjct: 280 MYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVS 339

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           ++  L +C DLGDL  G+++    V+ ++D N  + ++LI MY KC  +  A  +F  + 
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           ++ +V+WNAMI  +AQNG   EA+  F++M+   V PD  T + V++A A +      KW
Sbjct: 400 SRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +     +  L  ++F           CG+I  A  +F+ M   +  +WNAMI     +G 
Sbjct: 460 IHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGI 519

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
              AL LFE M K  G  RPN VTF+ V+SAC H+GLV+ G + F +M  ++ + P  +H
Sbjct: 520 GKAALELFEEMQK--GTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDH 577

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y  MVDL  RAG L+EAWDF+ +MP K    V GA+LGACQ  KN + +++V + L E+ 
Sbjct: 578 YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELN 637

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
             + G +V+ + I+    MW+   ++R  M  +G+ KTPGCS + I +   S
Sbjct: 638 PEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/464 (29%), Positives = 241/464 (51%), Gaps = 19/464 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           LL++C S K ++ I   +  N + + +    +++ L       + A+ +F  I +     
Sbjct: 43  LLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVL 102

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +  M++G          +LK + +M+   ++P  + + ++   C +   L  G  +H  +
Sbjct: 103 YYTMLKGFAKV-SDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K G   D      L  MYA+C ++  ARKVFD + ERDLVSWN++++GYS+ G A+ A+
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           E+   M EE   P  IT+VSVL +   L  + +GK + G+ ++   D    + +AL+DMY
Sbjct: 222 EMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMY 281

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG+L  AR +FD M+ ++VV+WN+MI AY QN    EA+++F +M   GV P  ++++
Sbjct: 282 AKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVM 341

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
           G L ACA +G L+ G+++ K + +  L  ++            C  +D A  +F  +   
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
             VSWNAMI   A NGR  EAL  F +M  +    +P+  T++ V++A     +    + 
Sbjct: 402 TIVSWNAMILGFAQNGRPIEALNYFSQM--QARTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +  ++  +  L       + +VD+YA+ G +  A    + M E+
Sbjct: 460 IHGVVMRN-CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 187/354 (52%), Gaps = 18/354 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A LLF  +   N  ++N MI       +    ++ ++ +M   G+KP + +      +CA
Sbjct: 290 ARLLFDGMLERNVVSWNSMIDAYVQN-ENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L  L  G  +H    ++ LD +  V +SLI+MY +C ++D+A  +F +++ R +VSWN+
Sbjct: 349 DLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA 408

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI G+++ G   EA+  F +M+     PD  T VSV+ +  +L      KW+ G V++N 
Sbjct: 409 MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC 468

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D N ++ +AL+DMY KCGA++ AR +FD M  + V TWNAMI  Y  +G+   A+ LF 
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFE 528

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--C 358
            M+   + P+ +T + V+SAC+  G ++ G        + Y+ +  + H     D+    
Sbjct: 529 EMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRA 588

Query: 359 GSIDDALKVFEDMPVTNEVS-WNAMISALAF----NGRAHEALLLFERMSKEGG 407
           G +++A      MPV   V+ + AM+ A       N     A  LFE   ++GG
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGG 642


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 313/565 (55%), Gaps = 34/565 (6%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQ---QIH------TQMLINFIQKPNFLLIRIIDLKDF- 68
           D +   E +  LL+ C   K ++   ++H      TQ   +F+     L  RII +    
Sbjct: 100 DSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFV-----LNTRIITMYSMC 154

Query: 69  ---NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPF 124
              + + ++F ++ R N + +N ++   T   + +  ++ ++ ++  +   KPDNFT P 
Sbjct: 155 GSPSDSRMVFDKLRRKNLFQWNAIVSAYTRN-ELFEDAMSIFSELISVTEHKPDNFTLPC 213

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-RKVFDEIRER 183
           V  +CA LL L  G  +H    K+ L  D  V ++LI MY +CG ++ A ++VFD +  +
Sbjct: 214 VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTK 273

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
            + SWN+++ GY++    ++A++L+ +M +    PD  T+ S+L +C  +  L  G+ + 
Sbjct: 274 TVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 333

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           GF ++N + ++ ++G +L+ +Y  CG    A+ +FD M ++ +V+WN MI  Y+QNGL +
Sbjct: 334 GFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPD 393

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC----- 358
           EAI LF +M   G+ P +I ++ V  AC+ + AL LGK +  +A +  L  DIF      
Sbjct: 394 EAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSII 453

Query: 359 ------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                 G I  + ++F+ +   +  SWN +I+    +GR  EAL LFE+M + G   +P+
Sbjct: 454 DMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG--LKPD 511

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
           D TF G+L AC HAGLV++G   F+ M +   + PK EHY+C+VD+  RAG + +A   +
Sbjct: 512 DFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLI 571

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           E MP   D  +  +LL +C+   N  + ++V   LLE+E     NYV+ S +FA    WD
Sbjct: 572 EEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWD 631

Query: 533 DSAKMRALMREKGVSKTPGCSWIGI 557
           D  ++R  M++ G+ K  GCSWI +
Sbjct: 632 DVRRVRGRMKDIGLQKDAGCSWIEV 656



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 19/242 (7%)

Query: 199 GYAKEAVELFGRMREEEFLPD---EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN- 254
           G  KEA++   R  ++  L        +  +L +CG   D+ +G+ +   V  +    N 
Sbjct: 81  GNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCND 140

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-K 313
           F + + +I MY  CG+   +R VFD +  K++  WNA+++AY +N L  +A+ +F+ +  
Sbjct: 141 FVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELIS 200

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
                PD  TL  V+ ACA +  L LG+ +   A++  L  D+F           CG ++
Sbjct: 201 VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 260

Query: 363 DALK-VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           +A+K VF+ M      SWNA++   A N    +AL L+ +M+  G    P+  T   +L 
Sbjct: 261 EAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG--LDPDWFTIGSLLL 318

Query: 422 AC 423
           AC
Sbjct: 319 AC 320


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/501 (34%), Positives = 284/501 (56%), Gaps = 14/501 (2%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           + S+L     R N   +NVMI G  +    +S +L L+ +M   G+KPD  T   +F  C
Sbjct: 269 FNSILDKDSVRRNAVIWNVMISGYVSN-GCFSQALLLFIKMMVWGIKPDYSTMVSLFSLC 327

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +  L +  G  +H  +FK GL  +  V  +L+ MY +CG + +  K+F   +  +L+ W+
Sbjct: 328 SESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWS 387

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++IS  ++ G   +A+ELF   + E+ L D   LV+VL +C  L     G  + G   K 
Sbjct: 388 AVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKM 447

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               + ++GSAL+D+Y KC  +  +++VF  +  KD+V+WNA+I+ YAQ+  ++EA+  F
Sbjct: 448 GFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAF 507

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+   + P+ +T+  +LS CA +  + L K V  Y  ++GL   +            C
Sbjct: 508 RDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKC 567

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G I+ +L  FE MP  N+VSWN++I  +  + R  E ++LF++M   G   +P+ VTF  
Sbjct: 568 GDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASG--IKPDHVTFTA 625

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +LSAC HAG VDEG + F  M   F L P+ E Y+CMVDL  RAGHL++A+D +  MP  
Sbjct: 626 ILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCT 685

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D+ + G+LLG+C+   +  +++ V   + ++  S+ G  V+ + ++ NL    + +K+R
Sbjct: 686 PDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVR 745

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
           + +++ G+ K PGCSWI +D+
Sbjct: 746 SEIKDMGLKKKPGCSWIEVDN 766



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 217/417 (52%), Gaps = 22/417 (5%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTY-PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           +  ++ +Y +M   G+K + F Y P +  +   L  +  G  +H  V K+G+ +D  V +
Sbjct: 89  FDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVN 148

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK-MGYAKEAVELFGRMREEEFL 217
           SL+TMY +CG ++ A ++F+++ E DLVSWN+MISG+ K M Y +  +     + E    
Sbjct: 149 SLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIY 208

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           P+ +  VS + SC  L  L  G+ + G VVK+ +D+  Y+ S+LI+MY KCG++  A  +
Sbjct: 209 PNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENI 268

Query: 278 FDAMVNKD-----VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
           F+++++KD      V WN MI+ Y  NG  ++A++LF +M   G+ PD  T++ + S C+
Sbjct: 269 FNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCS 328

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
               +  GK +     + GL+++I            CG +   LK+F      N + W+A
Sbjct: 329 ESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSA 388

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           +IS  A +G   +AL LF     E G A  +    + VL AC    L  EG ++  L ++
Sbjct: 389 VISNCAQSGCPTKALELFYEFKMEDGLA--DSGILVAVLRACSSLTLKPEGMQIHGL-AT 445

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
             G +      S +VDLYA+   +  +     R+ +K D +   AL+    + +  D
Sbjct: 446 KMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQK-DLVSWNALISGYAQDECAD 501


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 308/577 (53%), Gaps = 30/577 (5%)

Query: 2   LLRAKAYSRHLAFTELNDPSLLREKLL---SLLKKCPSTKTVQ---QIHTQMLINFIQKP 55
           L ++   S  L   +  DP  +  K +   SLL+ C          QIH  ++ + ++  
Sbjct: 34  LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFD 93

Query: 56  NFLLIRIIDL-----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
            F+   ++ L      DF     +F  +   +  ++  MI G      K  +SL+L+++M
Sbjct: 94  RFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRV-GKPMNSLELFWKM 152

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
              G++P+ FT   V  +C+ L  L  G   H  V   G D +  ++ +LI M+ R   L
Sbjct: 153 LAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCAL 212

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGS 229
           D AR++FDE+ E D + W S+IS  ++  +  EA+  F  M R+    PD  T  +VL +
Sbjct: 213 DDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTA 272

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           CG+LG L  GK V   V+      N  + S+L+DMYGKCG++  ++R+FD M  K+ V+W
Sbjct: 273 CGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSW 332

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYAS 348
           +A++  Y QNG     I +F +M+      D      +L  CA + A+  GK V  +Y  
Sbjct: 333 SALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIR 388

Query: 349 QRGLRHDIF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           + G R  I           CG I+ A  +F+ MPV N ++WN+MI   A NGR  EAL +
Sbjct: 389 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 448

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F +M KEG   +P+ ++FIG+L AC H GLVDEGR  F  M+  +G+    EHYSCMVDL
Sbjct: 449 FNQMVKEG--IKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDL 506

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             RAG L EA   +E    + D  +  ALLGAC    N ++++R+ + ++E+E     +Y
Sbjct: 507 LGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSY 566

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           V+ + ++  +  W+D+ ++R LM+++GV+K PG SWI
Sbjct: 567 VLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWI 603


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 267/455 (58%), Gaps = 18/455 (3%)

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI---TMYARCGKLDSARK 175
           N  +P   +S     +LN    + +   K  L  D  V   LI   T+      +D A  
Sbjct: 28  NQLHPLSLLS--KCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHH 85

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           +FD+I ++D++ +N M  GY++      A  LFG +     LPD+ T  S+L +C     
Sbjct: 86  LFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKA 145

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G  +  F VK  ++ N Y+   LI+MY +C  +  AR VFD M    +V++NA+IT 
Sbjct: 146 LREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITG 205

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH- 354
           YA++   NEA+ LF  ++ + + P  +T++ V+ +CA +GALDLGKW+ +Y  ++G    
Sbjct: 206 YARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKY 265

Query: 355 --------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                   D+F  CGS+ DA+ +FE M V +  +W+AMI A A +G   +A+ +FE M +
Sbjct: 266 VKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKR 325

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           EG   RP+++TF+G+L AC HAGLV++GR  F  MS ++G+ P  +HY CMVDL  RAGH
Sbjct: 326 EG--VRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGH 383

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L EA++FV+++  K   I+   LL AC    N ++++RV++ + E++ ++ G+YVI S +
Sbjct: 384 LDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNL 443

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +A +  W+D   +R LM+++GV K PGCS + +++
Sbjct: 444 YARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNN 478



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 214/395 (54%), Gaps = 21/395 (5%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN-------YASLLFHQISR 80
           LSLL KC S   ++QI    +   +Q    +L ++I+    N       +A  LF QI  
Sbjct: 33  LSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILD 92

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +   FN+M RG   +   Y  +  L+ ++   GL PD++T+  +  +CA+  AL  G+ 
Sbjct: 93  KDIILFNIMARGYARSNSPYL-AFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMG 151

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K+GL+ + ++  +LI MYA C  +++AR VFDE+ +  +VS+N++I+GY++   
Sbjct: 152 LHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQ 211

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             EA+ LF  ++     P ++T++SV+ SC  LG L LGKW+  +V K   D    + +A
Sbjct: 212 PNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTA 271

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDM+ KCG+L  A  +F+ M  +D   W+AMI A+A +G   +AI +F  MK  GV PD
Sbjct: 272 LIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPD 331

Query: 321 KITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CGSIDDALKVF 368
           +IT +G+L AC+  G ++ G+         Y    G++H     D+    G +D+A    
Sbjct: 332 EITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFV 391

Query: 369 EDMPV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
           + + +    + W  ++SA + +G    A  + ER+
Sbjct: 392 DKLEIKATPILWRTLLSACSTHGNVEMAKRVIERI 426


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 302/569 (53%), Gaps = 33/569 (5%)

Query: 25  EKLLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQ 77
           + LL LL+ C    S K  QQ H Q+L N   +  FL  R++       +   +  +F  
Sbjct: 29  QSLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFES 88

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +   + Y +N +I G       +  +L L+ +M R G+ PD++T   VF     L  L  
Sbjct: 89  VEAKSVYLWNSLINGYVKN-HDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVS 147

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H    +IG   D  V +SL++MY RCG+   A KVFDE   R++ S+N +ISG + 
Sbjct: 148 GKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAA 207

Query: 198 MGYAK-----EAVELFGRMREEEFLPDEITLVSVLG-SCGDLGDLVLGKWVEGFVVKN-- 249
           +         +    F RM+ E F  D  T+ S+L   CGD G    G+ +  +VVKN  
Sbjct: 208 LENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGL 267

Query: 250 --KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
             KMD + ++GS+LIDMY +   +V  RRVFD M N++V  W AMI  Y QNG  ++A++
Sbjct: 268 DLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALV 327

Query: 308 LFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
           L   M+   G+ P+K++LI  L AC  +  L  GK +  ++ +  L  D+          
Sbjct: 328 LLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMY 387

Query: 358 --CGSIDDALKVFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
             CGS+D A + FE      + ++W++MISA   +GR  EA++ + +M ++G   +P+ +
Sbjct: 388 SKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQG--FKPDMI 445

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T +GVLSAC  +GLVDEG  ++  + + + + P  E  +C+VD+  R+G L +A +F++ 
Sbjct: 446 TVVGVLSACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKE 505

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP      V G+LL A     N+       + LLE+E  N  NY+  S  +A+ + WD  
Sbjct: 506 MPLDPGPSVWGSLLTASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVV 565

Query: 535 AKMRALMREKGVSKTPGCSWIGIDDPKQS 563
            ++R +M+E+G+ K PGCSWI I     S
Sbjct: 566 TEVRTIMKERGLKKVPGCSWITISGKTHS 594


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 308/577 (53%), Gaps = 30/577 (5%)

Query: 2   LLRAKAYSRHLAFTELNDPSLLREKLL---SLLKKCPSTKTVQ---QIHTQMLINFIQKP 55
           L ++   S  L   +  DP  +  K +   SLL+ C          QIH  ++ + ++  
Sbjct: 93  LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFD 152

Query: 56  NFLLIRIIDL-----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
            F+   ++ L      DF     +F  +   +  ++  MI G      K  +SL+L+++M
Sbjct: 153 RFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRV-GKPMNSLELFWKM 211

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
              G++P+ FT   V  +C+ L  L  G   H  V   G D +  ++ +LI M+ R   L
Sbjct: 212 LAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCAL 271

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGS 229
           D AR++FDE+ E D + W S+IS  ++  +  EA+  F  M R+    PD  T  +VL +
Sbjct: 272 DDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTA 331

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           CG+LG L  GK V   V+      N  + S+L+DMYGKCG++  ++R+FD M  K+ V+W
Sbjct: 332 CGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSW 391

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYAS 348
           +A++  Y QNG     I +F +M+      D      +L  CA + A+  GK V  +Y  
Sbjct: 392 SALLGGYCQNGDFKSVIQIFRKMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIR 447

Query: 349 QRGLRHDIF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           + G R  I           CG I+ A  +F+ MPV N ++WN+MI   A NGR  EAL +
Sbjct: 448 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 507

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F +M KEG   +P+ ++FIG+L AC H GLVDEGR  F  M+  +G+    EHYSCMVDL
Sbjct: 508 FNQMVKEG--IKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDL 565

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             RAG L EA   +E    + D  +  ALLGAC    N ++++R+ + ++E+E     +Y
Sbjct: 566 LGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSY 625

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           V+ + ++  +  W+D+ ++R LM+++GV+K PG SWI
Sbjct: 626 VLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWI 662


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 282/529 (53%), Gaps = 53/529 (10%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ I  P   A+  +IR  T+    +  SL  +  M   GL PD+  +P V  SCA L+
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPH-QSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL----------------------- 170
            LN G S+H  + ++GLD D +  ++L+ MY++   L                       
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 171 ---------DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
                    DS RK+F+ + E+DLVSWN++I+G ++ G  +E + +   M      PD  
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           TL SVL    +  D+  GK + G  ++  +D + Y+ S+LIDMY KC  +  + RVF  +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             +D ++WN++I    QNGL +E +  F +M  A + P   +   ++ ACA +  L LGK
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y ++ G   +IF           CG+I  A ++F+ M + + VSW AMI   A +G
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHG 420

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +A +A+ LFE+M  EG  A         VL+AC H GLVDE  + F+ M+  FG+ P  E
Sbjct: 421 QAPDAIELFEQMETEGIKA---------VLTACSHGGLVDEAWKYFNSMTRDFGIAPGVE 471

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+ + DL  RAG L EA+DF+  M       +   LL AC+  KN D++++V   +LE+
Sbjct: 472 HYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEV 531

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + +N+G Y++ + I++  + W ++AK RA MR  G+ KTP CSWI + +
Sbjct: 532 DPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 580



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 152/279 (54%), Gaps = 8/279 (2%)

Query: 60  IRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
           +R + +   +    +F  +   +  ++N +I G       Y  +L++  +M    LKPD+
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAG-NARNGLYEETLRMIREMGGANLKPDS 239

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           FT   V    A  + ++ G  +H    + GLD D +V+ SLI MYA+C ++  + +VF  
Sbjct: 240 FTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL 299

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + ERD +SWNS+I+G  + G   E +  F +M   +  P   +  S++ +C  L  L LG
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           K + G++ +N  D N ++ S+L+DMY KCG +  A+++FD M  +D+V+W AMI   A +
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           G + +AI LF +M+  G+         VL+AC+  G +D
Sbjct: 420 GQAPDAIELFEQMETEGIK-------AVLTACSHGGLVD 451



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 167/372 (44%), Gaps = 47/372 (12%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           +Y+    L  + ++F+ I     ++W S+I  Y+  G   +++  F  M      PD   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA-------- 274
             SVL SC  L DL LG+ + G++++  +D + Y G+AL++MY K   L  +        
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 275 ------------------------RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                                   R++F+ M  KD+V+WN +I   A+NGL  E + +  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M  A + PD  TL  VL   A    +  GK +   + ++GL  DI+           C 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            + D+ +VF  +   + +SWN++I+    NG   E L  F +M       +P   +F  +
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLM--AKIKPKSYSFSSI 346

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           + AC H   +  G++L   ++ + G        S +VD+YA+ G++  A    +RM  + 
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR- 404

Query: 480 DEIVLGALLGAC 491
           D +   A++  C
Sbjct: 405 DMVSWTAMIMGC 416


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 299/564 (53%), Gaps = 57/564 (10%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFH-------QI 78
           KL+S    C   K  +++   M    +   NF++     + DF  +  LF        + 
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 79  SRPNEYAF--------------NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
            RP E AF              N MI G  +        L +Y QM  LG+  D  T   
Sbjct: 199 KRP-ESAFELFDKLCDRDVISWNSMISGYVSNGLT-ERGLGIYKQMMYLGIDVDLATIIS 256

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           V + CAN   L+ G +VHS   K   +   + S++L+ MY++CG LD A +VF+++ ER+
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +VSW SMI+GY++ G +  A++L  +M +E    D + + S+L +C   G L  GK V  
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 376

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           ++  N M+ N ++ +AL+DMY KCG++  A  VF  MV KD+++WN MI           
Sbjct: 377 YIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------- 425

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--------- 355
                       + PD  T+  VL ACAS+ AL+ GK +  Y  + G   D         
Sbjct: 426 ----------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVD 475

Query: 356 --IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
             + CG +  A  +F+ +P  + VSW  MI+    +G  +EA+  F  M   G    P++
Sbjct: 476 LYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG--IEPDE 533

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           V+FI +L AC H+GL+++G R F +M + F + PK EHY+CMVDL +R G+LS+A++F+E
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFME 593

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            +P   D  + GALL  C+   + +++++V + + E+E  N+G YV+ + I+A  + W++
Sbjct: 594 TLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEE 653

Query: 534 SAKMRALMREKGVSKTPGCSWIGI 557
             ++R  + ++G+ K PGCSWI I
Sbjct: 654 VKRLREKIGKQGLRKNPGCSWIEI 677



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 182/420 (43%), Gaps = 86/420 (20%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  V   CA L +   G  VHS +    +  D  +   L++ YA CG L   R+VFD +
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELF---------GRMREEEF-LPDEI--------- 221
            ++++  WN M+S Y+K+G  KE++ LF         G+  E  F L D++         
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 222 --------------------------------TLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
                                           T++SVL  C + G L LGK V    +K+
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +      + L+DMY KCG L  A RVF+ M  ++VV+W +MI  Y ++G S+ AI L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M+  GV  D + +  +L ACA  G+LD GK V  Y     +  ++F           C
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKC 400

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS++ A  VF  M V + +SWN MI                       G  +P+  T   
Sbjct: 401 GSMEAANSVFSTMVVKDIISWNTMI-----------------------GELKPDSRTMAC 437

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC     ++ G+ +   +  + G        + +VDLY + G L  A    + +P K
Sbjct: 438 VLPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 164/380 (43%), Gaps = 72/380 (18%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +  +  +N+ I  + ++G  + A+EL    ++ E   +  T  SVL  C  L     GK 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELICMCQKSEL--ETKTYGSVLQLCAGLKSFTDGKK 120

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
           V   +  N + ++  +G  L+  Y  CG L   RRVFD M                    
Sbjct: 121 VHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 282 -------------------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                                           ++DV++WN+MI+ Y  NGL+   + ++ 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M Y G++ D  T+I VL  CA+ G L LGK V   A +      I            CG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 300

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D AL+VFE M   N VSW +MI+    +GR+  A+ L ++M KEG   + + V    +
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG--VKLDVVAITSI 358

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPE 477
           L AC  +G +D G+ + D + ++     +S  + C  ++D+YA+ G +  A      M  
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANN---MESNLFVCNALMDMYAKCGSMEAANSVFSTMVV 415

Query: 478 KVDEIVLGALLGACQKQKNT 497
           K D I    ++G  +    T
Sbjct: 416 K-DIISWNTMIGELKPDSRT 434


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/540 (34%), Positives = 303/540 (56%), Gaps = 27/540 (5%)

Query: 40  VQQIHTQMLIN--FIQKPNFLLIRIID-----LKDFNYASLLFHQISRPNEYAFNVMI-- 90
           ++QIH  +L +  F  + +  L R++         F YA  L  Q+   +   ++ +I  
Sbjct: 17  LKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGH 76

Query: 91  -RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
             G  T  ++ S     Y  M+R G+ P   T+P +  +   L   N     H+ + K G
Sbjct: 77  FSGGITLNRRLS--FLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFG 133

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           LD D  V +SLI+ Y+  G  D A ++FD   ++D+V+W +MI G+ + G A EA+  F 
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFV 193

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKC 268
            M++     +E+T+VSVL + G + D+  G+ V G  ++  ++  + ++GS+L+DMYGKC
Sbjct: 194 EMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
                A++VFD M +++VVTW A+I  Y Q+   ++ +++F  M  + V P++ TL  VL
Sbjct: 254 SCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVL 313

Query: 329 SACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEV 377
           SACA +GAL  G+ V  Y  +  +  +           + CG +++A+ VFE +   N  
Sbjct: 314 SACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 373

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           +W AMI+  A +G A +A  LF  M        PN+VTF+ VLSAC H GLV+EGRRLF 
Sbjct: 374 TWTAMINGFAAHGYARDAFDLFYTML--SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFL 431

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
            M   F +  K++HY+CMVDL+ R G L EA   +ERMP +   +V GAL G+C   K+ 
Sbjct: 432 SMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDY 491

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++ +     +++++ S+SG Y + + +++  + WD+ A++R  M+++ V K+PG SWI +
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEV 551


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 286/503 (56%), Gaps = 21/503 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A +LF ++   +  ++N MI G   +      +L L   ++ +    D+ T   +  +C 
Sbjct: 204 ARILFDEMPTRDMGSWNAMISGYCQSGNA-KEALTLSDGLRAM----DSVTVVSLLSACT 258

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                N GV++HS   K GL+ +  VS+ LI +YA  G L   +KVFD +  RDL+SWNS
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNS 318

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I  Y        A+ LF  MR     PD +TL+S+      LG++   + V+GF ++  
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 251 MDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             L +  +G+A++ MY K G +  AR VF+ + NKDV++WN +I+ YAQNG ++EAI ++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMY 438

Query: 310 NRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           N M+  G  ++ ++ T + VL AC+  GAL  G  +     + GL  D+F          
Sbjct: 439 NIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYG 498

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +DDAL +F  +P  N V WN +I+   F+G   +A++LF+ M  EG   +P+ +TF
Sbjct: 499 KCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG--VKPDHITF 556

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC H+GLVDEG   F++M + +G+ P  +HY CMVDLY RAG L  A +F++ MP
Sbjct: 557 VTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMP 616

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  + GALL AC+   N D+ +   + L E+E  + G +V+ S ++A+   W+   +
Sbjct: 617 LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDE 676

Query: 537 MRALMREKGVSKTPGCSWIGIDD 559
           +R++   KG+ KTPG S + +D+
Sbjct: 677 IRSITSGKGLRKTPGWSSMEVDN 699



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 146/482 (30%), Positives = 254/482 (52%), Gaps = 30/482 (6%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
           +L + C + ++ + +H +++++   +   +  ++++L     +   A   F  I   + Y
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVY 118

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGVSVH 142
           A+N+MI G   A   YS  +   + +  L  GL+PD  T+P V  +C N+     G  +H
Sbjct: 119 AWNLMISGYGRA--GYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNV---TDGNKIH 173

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
               K G   D +V+ SLI +Y R G + +AR +FDE+  RD+ SWN+MISGY + G AK
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAK 233

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ L   +R      D +T+VS+L +C + GD   G  +  + +K+ ++   ++ + LI
Sbjct: 234 EALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLI 289

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D+Y + G+L   ++VFD M  +D+++WN++I AY  N     AI+LF  M+ + + PD +
Sbjct: 290 DLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCL 349

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFED 370
           TLI + S  + +G +   + V  +  ++G    DI  G+           +D A  VF  
Sbjct: 350 TLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNW 409

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +P  + +SWN +IS  A NG A EA+ ++  M +EGG    N  T++ VL AC  AG + 
Sbjct: 410 LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALR 469

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +G +L   +  + GL       + + D+Y + G L +A     ++P +V+ +    L+ A
Sbjct: 470 QGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLI-A 526

Query: 491 CQ 492
           C 
Sbjct: 527 CH 528


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 171/452 (37%), Positives = 258/452 (57%), Gaps = 13/452 (2%)

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
           ++ +  V  S A  + +  G  +H    K GL     +S++L+TMY++C  L+ A K+FD
Sbjct: 210 DYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFD 269

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
              +R+ ++W++M++GYS+ G + EA++LF RM      P E T+V VL +C D+  LV 
Sbjct: 270 SSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVE 329

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           GK +  F++K   + + +  +AL+DMY K G L  AR+ FD +  +DV  W ++I+ Y Q
Sbjct: 330 GKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQ 389

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-- 356
           N  + EA++L+ RMK AG+ P+  T+  VL AC+S+  L+LGK V  +  + G   ++  
Sbjct: 390 NSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPI 449

Query: 357 ---------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CGS++D   VF   P  + VSWNAMIS L+ NG+  EAL LFE M  EG 
Sbjct: 450 GSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEG- 508

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              P+DVTF+ ++SAC H G V+ G   F +MS  FGL PK +HY+CMVD+ +RAG L E
Sbjct: 509 -TEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKE 567

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
             +F+E         +   LL AC+   N ++     + L+ + S  S  YV  + I+  
Sbjct: 568 TKEFIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTA 627

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           L    D  ++  LMR  GVSK  GCSWI + +
Sbjct: 628 LGRMRDVERVWKLMRTNGVSKEVGCSWIALKN 659



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 206/419 (49%), Gaps = 21/419 (5%)

Query: 41  QQIH----TQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +QIH       L+ F+   N L+      +  N A  +F      N   ++ M+ G +  
Sbjct: 230 RQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQN 289

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            +    ++KL+ +M   G+KP  +T   V  +C+++  L  G  +HS + K+G +     
Sbjct: 290 GESLE-AIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFA 348

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           + +L+ MYA+ G L  ARK FD ++ERD+  W S+ISGY +    +EA+ L+ RM+    
Sbjct: 349 TTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGI 408

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           +P++ T+ SVL +C  L  L LGK V G  +K+   L   +GSAL  MY KCG+L     
Sbjct: 409 IPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNL 468

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VF    NKDVV+WNAMI+  + NG  +EA+ LF  M   G  PD +T + ++SAC+  G 
Sbjct: 469 VFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGF 528

Query: 337 LDLG-KWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVS-WNAMI 383
           ++ G  +    + Q GL   +             G + +  +  E   + + +  W  ++
Sbjct: 529 VERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWRILL 588

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           SA   +G     +   E++   G       V   G+ +A    G + +  R++ LM ++
Sbjct: 589 SACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTA---LGRMRDVERVWKLMRTN 644



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 214/458 (46%), Gaps = 44/458 (9%)

Query: 37  TKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLT-T 95
           T T  Q H  +L+NF  K   L            A  +F+ I   +  ++N +I G +  
Sbjct: 47  TSTCTQ-HANVLVNFYAKCGQLA----------KAHSIFNAIICKDVVSWNSLITGYSQN 95

Query: 96  AWQKYSHS-LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
                SH+ ++L+ +M+   + P+ +T   +F + ++L +   G   H+ V K+    D 
Sbjct: 96  GGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDI 155

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  SL+ MY + G           ++   +V +   +  Y K    ++       + E+
Sbjct: 156 YVDTSLVGMYCKAG-----------LKYLYMVYYGFWLC-YKKDVLRRQLKSSICFLEEK 203

Query: 215 EFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
           E   D +    +VL S      + LG+ + G  VKN +     + +AL+ MY KC +L  
Sbjct: 204 EKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNE 263

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A ++FD+  +++ +TW+AM+T Y+QNG S EAI LF+RM  AG+ P + T++GVL+AC+ 
Sbjct: 264 ACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSD 323

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           I  L  GK +  +  + G    +F            G + DA K F+ +   +   W ++
Sbjct: 324 ICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSL 383

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSS 441
           IS    N    EAL+L+ RM   G    PND T   VL AC     ++ G+++    +  
Sbjct: 384 ISGYVQNSDNEEALILYRRMKTAG--IIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 441

Query: 442 SFGL-IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            FGL +P     S +  +Y + G L +      R P K
Sbjct: 442 GFGLEVPIG---SALSTMYTKCGSLEDGNLVFRRTPNK 476



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 184/384 (47%), Gaps = 35/384 (9%)

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           NL+A   G +VH+ + + G       ++ L+  YA+CG+L  A  +F+ I  +D+VSWNS
Sbjct: 31  NLVA---GRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNS 87

Query: 191 MISGYSKMG---YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +I+GYS+ G    +   ++LF  MR ++ LP+  TL  +  +   L    +G+     VV
Sbjct: 88  LITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVV 147

Query: 248 KNKMDLNFYMGSALIDMYGKCGA--LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           K     + Y+ ++L+ MY K G   L      F     KDV+          +  L +  
Sbjct: 148 KMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVL----------RRQLKSSI 197

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
             L  + K +  + D +    VLS+ A+   + LG+ +     + GL   +         
Sbjct: 198 CFLEEKEKES--DSDYV-FTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTM 254

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              C S+++A K+F+     N ++W+AM++  + NG + EA+ LF RM   G   +P++ 
Sbjct: 255 YSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAG--IKPSEY 312

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T +GVL+AC     + EG++L   +    G        + +VD+YA+AG L++A    + 
Sbjct: 313 TIVGVLNACSDICYLVEGKQLHSFL-LKLGFERHLFATTALVDMYAKAGCLADARKGFDC 371

Query: 475 MPEKVDEIVLGALLGACQKQKNTD 498
           + E+   +    + G  Q   N +
Sbjct: 372 LQERDVALWTSLISGYVQNSDNEE 395



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           TL+  L       +LV G+ V   +++          + L++ Y KCG L  A  +F+A+
Sbjct: 18  TLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAI 77

Query: 282 VNKDVVTWNAMITAYAQNG---LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           + KDVV+WN++IT Y+QNG    S+  + LF  M+   + P+  TL G+  A +S+ +  
Sbjct: 78  ICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCT 137

Query: 339 LGK 341
           +G+
Sbjct: 138 VGR 140


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 262/458 (57%), Gaps = 6/458 (1%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           S +++ QM+  G+ P+ FTYP +  +C  L A + G  +H+ V K G   + +VS  LI 
Sbjct: 422 SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLID 481

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+ GKLD A K+F  ++E D+VSW +MI+GY++     EA+ LF  M+++    D I 
Sbjct: 482 MYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG 541

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
             S + +C  +  L  G+ +      +    +  +G+AL+ +Y +CG +  A   FD + 
Sbjct: 542 FASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIY 601

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            KD V+WN++++ +AQ+G   EA+ +F +M  AG+  +  T    +SA A+I  + +GK 
Sbjct: 602 AKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ 661

Query: 343 VDKYASQRGLRHDIFCGSIDDAL-KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           +     + G   +     + +AL  ++      +++SWN+MI+  + +G   EAL LFE 
Sbjct: 662 IHGMIRKTGYDSET---EVSNALITLYAKCGTIDDISWNSMITGYSQHGCGFEALKLFED 718

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M +      PN VTF+GVLSAC H GLVDEG   F  MS +  L+PK EHY+C+VDL  R
Sbjct: 719 MKQLD--VLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGR 776

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           +G LS A  FVE MP + D +V   LL AC   KN D+ +     LLE+E  +S  YV+ 
Sbjct: 777 SGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLV 836

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++A    WD   + R +M+++GV K PG SW+ +D+
Sbjct: 837 SNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDN 874



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 226/466 (48%), Gaps = 37/466 (7%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQ 77
           L  + +LS   K    +  +Q+H  +L        ++   ++ L     + + A  +FH 
Sbjct: 252 LFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHC 311

Query: 78  ISRPNEYAFNVMIRGLTTAWQKY-SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           +S+ +  ++N +I GL  A Q Y + +L L+ +M     KPD  T   +  +CA++ AL 
Sbjct: 312 MSQRDRVSYNSLISGL--AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALP 369

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
           +G   HS   K G+  D  V  SL+ +Y +C  + +A + F                 Y 
Sbjct: 370 NGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYG 414

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           ++    ++ ++F +M+ E  +P++ T  S+L +C  LG   LG+ +   V+K     N Y
Sbjct: 415 QLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVY 474

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + S LIDMY K G L  A ++F  +   DVV+W AMI  Y Q+    EA+ LF  M+  G
Sbjct: 475 VSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG 534

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           +  D I     +SACA I ALD G+ +   +   G   D+            CG + +A 
Sbjct: 535 IKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAY 594

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
             F+ +   + VSWN+++S  A +G   EAL +F +M+K G     N  TF   +SA  +
Sbjct: 595 AAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAG--LEINSFTFGSAVSAAAN 652

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE-AWD 470
              V  G+++  ++  + G   ++E  + ++ LYA+ G + + +W+
Sbjct: 653 IANVRIGKQIHGMIRKT-GYDSETEVSNALITLYAKCGTIDDISWN 697



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 184/336 (54%), Gaps = 23/336 (6%)

Query: 14  FTELNDPSLLREKLL--SLLKKCPS---TKTVQQIHTQMLINFIQKPNFLLIRIIDL--- 65
           FT++    ++  +    S+LK C +   T   +QIHTQ+L    Q   ++   +ID+   
Sbjct: 426 FTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAK 485

Query: 66  -KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
               ++A  +F ++   +  ++  MI G T    K++ +L L+ +M+  G+K DN  +  
Sbjct: 486 HGKLDHALKIFRRLKENDVVSWTAMIAGYTQH-DKFTEALNLFKEMQDQGIKSDNIGFAS 544

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
              +CA + AL+ G  +H+     G  +D  + ++L+++YARCGK+  A   FD+I  +D
Sbjct: 545 AISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKD 604

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
            VSWNS++SG+++ GY +EA+ +F +M +     +  T  S + +  ++ ++ +GK + G
Sbjct: 605 NVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHG 664

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            + K   D    + +ALI +Y KCG +             D ++WN+MIT Y+Q+G   E
Sbjct: 665 MIRKTGYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFE 711

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           A+ LF  MK   V P+ +T +GVLSAC+ +G +D G
Sbjct: 712 ALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEG 747



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 253/529 (47%), Gaps = 56/529 (10%)

Query: 36  STKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIR 91
           S + V+QIH + + +  +   F+   +IDL   N     A  +F  +   +  ++  MI 
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLD 151
           GL+    +   ++ L+ Q+              V  +C  +     G  +H  V K G  
Sbjct: 239 GLSQNGYE-EEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFS 283

Query: 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
            + +V ++L+T+Y+R G L SA ++F  + +RD VS+NS+ISG ++ GY   A+ LF +M
Sbjct: 284 SETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKM 343

Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
             +   PD +T+ S+L +C  +G L  GK    + +K  M  +  +  +L+D+Y KC   
Sbjct: 344 NLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKC--- 400

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
                        D+ T +     Y Q    N++  +F +M+  G+ P++ T   +L  C
Sbjct: 401 ------------SDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTC 448

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWN 380
            ++GA DLG+ +     + G + +++            G +D ALK+F  +   + VSW 
Sbjct: 449 TTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWT 508

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           AMI+    + +  EAL LF+ M  +G   + +++ F   +SAC     +D+GR++    S
Sbjct: 509 AMIAGYTQHDKFTEALNLFKEMQDQG--IKSDNIGFASAISACAGIQALDQGRQI-HAQS 565

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKN 496
              G        + +V LYAR G + EA+   +++  K D +   +L+    +    ++ 
Sbjct: 566 CLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAK-DNVSWNSLVSGFAQSGYFEEA 624

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
            ++  ++ +  LEI S   G+ V ++   AN+++     ++  ++R+ G
Sbjct: 625 LNIFAQMNKAGLEINSFTFGSAVSAAANIANVRI---GKQIHGMIRKTG 670



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 26/396 (6%)

Query: 106 LYYQMKRLGLKPDNFTYPFVFISCA-NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           L+ +M    ++ D   +  V   C+ N ++      +H+     G +    + + LI +Y
Sbjct: 150 LFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLY 209

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
            + G L SA+KVF+ ++ RD VSW +MISG S+ GY +EA+ LF ++             
Sbjct: 210 FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI------------- 256

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
            VL +C  +     GK + G V+K       Y+ +AL+ +Y + G L  A ++F  M  +
Sbjct: 257 -VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR 315

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D V++N++I+  AQ G  N A+ LF +M      PD +T+  +LSACAS+GAL  GK   
Sbjct: 316 DRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFH 375

Query: 345 KYASQRGLRHDIFC-GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            YA + G+  DI   GS+ D      D+   +E                +++  +F +M 
Sbjct: 376 SYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHE-----FFLCYGQLDNLNKSFQIFTQMQ 430

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            EG    PN  T+  +L  C   G  D G ++   +  + G        S ++D+YA+ G
Sbjct: 431 IEG--IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHG 487

Query: 464 HLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTD 498
            L  A     R+ E  D +   A++ G  Q  K T+
Sbjct: 488 KLDHALKIFRRLKEN-DVVSWTAMIAGYTQHDKFTE 522



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 33/326 (10%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI  Y   G L+ A  VFDE+  R L  WN + + +           LF RM  +    D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGF---VVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           E     VL  C   G+ V  ++VE      + +  + + ++ + LID+Y K G L  A++
Sbjct: 163 ERIFAVVLRGCS--GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKK 220

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VF+ +  +D V+W AMI+  +QNG   EA++LF ++              VLSAC  +  
Sbjct: 221 VFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEF 266

Query: 337 LDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISA 385
            + GK +     ++G   + +            G++  A ++F  M   + VS+N++IS 
Sbjct: 267 FEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISG 326

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
           LA  G  + AL LF++M+ +    +P+ VT   +LSAC   G +  G++ F   +   G+
Sbjct: 327 LAQQGYINRALALFKKMNLD--CQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGM 383

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDF 471
                    ++DLY +   +  A +F
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEF 409



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 106/256 (41%), Gaps = 36/256 (14%)

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +FY G  LID Y   G L  A  VFD M  + +  WN +   +    L      LF RM 
Sbjct: 96  SFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRML 155

Query: 314 YAGVNPDKITLIGVLSACASIG-ALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
              V  D+     VL  C+    +    + +       G     F            G +
Sbjct: 156 TKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFL 215

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A KVFE++   + VSW AMIS L+ NG   EA+LLF ++                VLS
Sbjct: 216 SSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI----------------VLS 259

Query: 422 ACVHAGLVDEGRRLFDL-MSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEK 478
           AC      + G++L  L +   F     SE Y C  +V LY+R+G+LS A      M ++
Sbjct: 260 ACTKVEFFEFGKQLHGLVLKQGF----SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR 315

Query: 479 VDEIVLGALLGACQKQ 494
            D +   +L+    +Q
Sbjct: 316 -DRVSYNSLISGLAQQ 330


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 296/548 (54%), Gaps = 22/548 (4%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LK C     ++   +IH+   +  ++   F+   ++D          A  LF  +S  +
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             A+N MI G  + +     +++L  QM+  G+ P++ T   V  +     AL HG ++H
Sbjct: 175 VVAWNAMIAG-CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALH 233

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
               +   D    V   L+ MYA+C  L  ARK+FD +  R+ VSW++MI GY      K
Sbjct: 234 GYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMK 293

Query: 203 EAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           EA+ELF +M  ++ + P  +TL SVL +C  L DL  G+ +  +++K    L+  +G+ L
Sbjct: 294 EALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTL 353

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY KCG +  A R FD M  KD V+++A+++   QNG +  A+ +F  M+ +G++PD 
Sbjct: 354 LSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDL 413

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T++GVL AC+ + AL  G     Y   RG   D             CG I  A +VF  
Sbjct: 414 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNR 473

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWNAMI     +G   EAL LF  +   G   +P+D+TFI +LS+C H+GLV 
Sbjct: 474 MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG--LKPDDITFICLLSSCSHSGLVM 531

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EGR  FD MS  F ++P+ EH  CMVD+  RAG + EA  F+  MP + D  +  ALL A
Sbjct: 532 EGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN ++ + V + +  +   ++GN+V+ S I++    WDD+A +R   ++ G+ K P
Sbjct: 592 CRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIP 651

Query: 551 GCSWIGID 558
           GCSWI I+
Sbjct: 652 GCSWIEIN 659



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 250/477 (52%), Gaps = 33/477 (6%)

Query: 23  LREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
           ++   L LL+ C  +K++   ++IH   L N     + +L ++  L         A  LF
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 76  HQISRPNEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            +I  P+   +N +IR    AW   +  ++ LY+ M  LG++P+ +TYPFV  +C+ LLA
Sbjct: 67  DEIPNPSVILWNQIIRAY--AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  GV +HS     GL+ D  V  +L+  YA+CG L  A+++F  +  RD+V+WN+MI+G
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            S  G   +AV+L  +M+EE   P+  T+V VL + G+   L  GK + G+ V+   D  
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             +G+ L+DMY KC  L+ AR++FD M  ++ V+W+AMI  Y  +    EA+ LF++M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 315 A-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
              ++P  +TL  VL ACA +  L  G+ +  Y  + G   DI            CG ID
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVID 364

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA++ F+ M   + VS++A++S    NG A  AL +F  M   G    P+  T +GVL A
Sbjct: 365 DAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG--IDPDLTTMLGVLPA 422

Query: 423 CVHAGLVDEGRRLFDLMSSSF----GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           C H   +  G       S  +    G    +   + ++D+Y++ G +S A +   RM
Sbjct: 423 CSHLAALQHG-----FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/493 (36%), Positives = 276/493 (55%), Gaps = 16/493 (3%)

Query: 77  QISRPNEYAFNVMIRGLTTAW---QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           Q+    EY   V   G+   +   + +  SLKL+ +M+ +G KP+NFT+  V  +C  L 
Sbjct: 201 QVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLE 260

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
             N G +VH   FK    E+  V   LI +Y + G +D A +VF+E+ + D++ W+ MI+
Sbjct: 261 VFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIA 320

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y++   ++EA+E+F RMR    LP++ TL S+L +C  L DL LG  +   VVK  +D+
Sbjct: 321 RYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDM 380

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ +AL+DMY KCG +  + ++F    N   V+WN +I  Y Q G   +A++LF  M 
Sbjct: 381 NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDML 440

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWV---------DKYASQRGLRHDIF--CGSID 362
              V   ++T   VL ACA I AL+ G  +         DK         D++  CG+I 
Sbjct: 441 ECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIK 500

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA  VF+ +   ++VSWNAMIS  + +G   EAL  FE M +     +P+ VTF+G+LSA
Sbjct: 501 DARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLET--ECKPDKVTFVGILSA 558

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C +AGL+D G+  F  M   + + P +EHY+CMV L  R+GHL +A   V  +P +   +
Sbjct: 559 CSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVM 618

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V  ALL AC    + ++ +   Q +LEIE  +   +V+ S I+AN + W + A +R  M+
Sbjct: 619 VWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMK 678

Query: 543 EKGVSKTPGCSWI 555
            KG+ K PG SWI
Sbjct: 679 RKGIRKEPGLSWI 691



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 239/471 (50%), Gaps = 24/471 (5%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL   +       A+ LF ++   N  +F  +I+G +    ++S ++ L+ +++  G 
Sbjct: 83  NILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCL-RFSEAIGLFSRLQGEGH 141

Query: 116 KPDNFTYPFVFISCANLLALNH----GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
           + +    PFVF +   LL        G SVH+ V+K+G D D  V  +LI  Y+ CG  +
Sbjct: 142 ELN----PFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAE 197

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            AR+VFD I  +D+VSW  M++ Y +    +E+++LF RMR   F P+  T  SVL +C 
Sbjct: 198 CARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV 257

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            L    +GK V G   K       ++G  LID+Y K G +  A +VF+ M   DV+ W+ 
Sbjct: 258 GLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSF 317

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MI  YAQ+  S EAI +F RM+   V P++ TL  +L ACAS+  L LG  +  +  + G
Sbjct: 318 MIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVG 377

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  ++F           CG ++++L++F + P   +VSWN +I      G   +AL+LF+
Sbjct: 378 LDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFK 437

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M +     +  +VT+  VL AC     ++ G ++  L   +      +   + ++D+YA
Sbjct: 438 DMLE--CQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTI-YDKNTVVGNALIDMYA 494

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           + G++ +A   V  M  + D++   A++           + +  + +LE E
Sbjct: 495 KCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETE 544



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 191/350 (54%), Gaps = 18/350 (5%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           F+ + +IDL     D + A  +F ++ + +   ++ MI     + Q    +++++ +M+R
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQS-EEAIEMFCRMRR 340

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
             + P+ FT   +  +CA+L+ L  G  +H  V K+GLD +  VS++L+ MYA+CG++++
Sbjct: 341 GLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           + ++F E      VSWN++I GY + G  ++A+ LF  M E +    E+T  SVL +C  
Sbjct: 401 SLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAG 460

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           +  L  G  +    VK   D N  +G+ALIDMY KCG +  AR VFD +   D V+WNAM
Sbjct: 461 IAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAM 520

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYA 347
           I+ Y+ +GL  EA+  F  M      PDK+T +G+LSAC++ G LD G+      V++Y 
Sbjct: 521 ISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYD 580

Query: 348 SQRGLRHDIF-------CGSIDDALKVFEDMPVTNEV-SWNAMISALAFN 389
            +    H           G +D A K+  ++P    V  W A++SA   +
Sbjct: 581 IEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIH 630



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 178/375 (47%), Gaps = 16/375 (4%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           + + Y  +  SC        G  +H  + K G   D   ++ L+  Y +   L  A K+F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           DE+ +R+ VS+ ++I GYS+     EA+ LF R++ E    +     +VL          
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LG  V   V K   D + ++G+ALID Y  CG    AR+VFDA+  KD+V+W  M+  Y 
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           +N    E++ LF+RM+  G  P+  T   VL AC  +   ++GK V   A +     ++F
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 358 C-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                       G +DDAL+VFE+MP  + + W+ MI+  A + ++ EA+ +F RM +  
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRR-- 340

Query: 407 GAARPNDVTFIGVLSACVHAGLVD-EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   PN  T   +L AC  A LVD +            GL       + ++D+YA+ G +
Sbjct: 341 GLVLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRM 398

Query: 466 SEAWDFVERMPEKVD 480
             +       P   D
Sbjct: 399 ENSLQLFSESPNCTD 413


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 313/604 (51%), Gaps = 81/604 (13%)

Query: 31  LKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNE 83
           +K+C    +++ V+ IH  ++        FL   I+     ++   YA  +F  I +PN 
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 84  YAFNVMIRGLTTA--------------------W----QKYSHSLKLYYQMKRLGLKPDN 119
           +++N ++   + +                    W    + YS S  +   +K       +
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD 129

Query: 120 FTYPFVFISCANLLALNH-------GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           F+     ++   +L L+        G  +H  V K+G +    V   L+ MY++ G +  
Sbjct: 130 FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISD 189

Query: 173 ARKVF-------------------------DEIR-----ERDLVSWNSMISGYSKMGYAK 202
           A+KVF                         D ++     E+D VSW++MI G ++ G  K
Sbjct: 190 AKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEK 249

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+E F  M+ E    D+    SVL +CG LG +  G+ +   +++  +  + Y+GSALI
Sbjct: 250 EAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALI 309

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KC  L  A+ VFD M  K+VV+W AM+  Y Q G + EA+ +F  M+ +G++PD  
Sbjct: 310 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHY 369

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL   +SACA+I +L+ G      A   GL H I            CG IDD+ ++F +M
Sbjct: 370 TLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEM 429

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
            V +EVSW AM+SA A  GRA EA+ LF++M + G   +P+ VT  GV+SAC  AGLV++
Sbjct: 430 NVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLG--LKPDGVTLTGVISACSRAGLVEK 487

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G+R F+LM + +G++P + HYSCM+DL++R+G + EA  F+  MP + D I    LL AC
Sbjct: 488 GQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSAC 547

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           + + N ++ +   + L+E++  +   Y + S I+A+   WD  A++R  M+EK V K PG
Sbjct: 548 RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPG 607

Query: 552 CSWI 555
            SWI
Sbjct: 608 QSWI 611


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 317/606 (52%), Gaps = 84/606 (13%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-----LKDFNYASLLFHQISR 80
           +L S+  +  +   ++Q+H Q++ N +   N+ +  +I+         +Y  LLF+    
Sbjct: 3   ELGSIASRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLN 62

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK----------------------------- 111
           PN + F  M+R   +  Q ++  + +Y QM+                             
Sbjct: 63  PNVFVFTSMLR-FYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHV 121

Query: 112 -RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV------------------------- 145
            +LG   D F    V    A L  + H   V   +                         
Sbjct: 122 LKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQ 181

Query: 146 ----FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
               F +  + +     +++T YA+   L++AR+ FD + ER +VSWN+M+SGY++ G A
Sbjct: 182 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLA 241

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+ LF  M      PDE T V+V+ +C   GD  L   +   + + ++ LN ++ +AL
Sbjct: 242 EEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTAL 301

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPD 320
           +DMY K G L  AR++F+ M  ++VVTWN+MI  YAQNG S  AI LF  M  A  + PD
Sbjct: 302 LDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 361

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLR-----HD--IF----CGSIDDALKVFE 369
           ++T++ V+SAC  +GAL+LG WV ++ ++  ++     H+  IF    CGS++DA +VF+
Sbjct: 362 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 421

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           +M   + VS+N +IS  A +G   EA+ L   M KEGG   P+ VTFIGVL+AC HAGL+
Sbjct: 422 EMATRDVVSYNTLISGFAAHGHGVEAINLMSTM-KEGG-IEPDRVTFIGVLTACSHAGLL 479

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           +EGR++F+ +       P  +HY+CMVDL  R G L +A   +ERMP +    V G+LL 
Sbjct: 480 EEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLN 534

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           A +  K  ++ +     L E+E  NSGN+++ S I+A+   W D  ++R  M++ GV KT
Sbjct: 535 ASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKT 594

Query: 550 PGCSWI 555
            G SW+
Sbjct: 595 TGWSWV 600


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 310/556 (55%), Gaps = 31/556 (5%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQI 78
           L E+ LS L KC +   V+Q+H Q+L + +    F++ ++I      +    A+  F+Q+
Sbjct: 19  LLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQV 78

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
             PN + +N MIR  +   Q  S +   ++ M+R G   DNFT+PF+   C   + L   
Sbjct: 79  QYPNVHLYNTMIRAHSHNSQP-SQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVI 137

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGK--LDSARKVFDEI-RERDLVSWNSMISGY 195
            SVH+ + K G   D  V +SLI  Y++CG   + +A+K+F  +   RD+VSWNSMISG 
Sbjct: 138 ESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGL 197

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLN 254
           +K G  +EA ++F  M E+    D I+  ++L      G + +GK  + F + ++M + N
Sbjct: 198 AKGGLYEEARKVFDEMPEK----DGISWNTMLD-----GYVKVGKMDDAFKLFDEMPERN 248

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
               S ++  Y K G +  AR +FD M  K++V+W  +++ +A+ GL+ EAI LF++M+ 
Sbjct: 249 VVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEK 308

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDD 363
           A +  D  T++ +L+ACA  G L LG+ +         +          D++  CG ++ 
Sbjct: 309 ACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNI 368

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  VF D+   + VSWNAM+  LA +G   +AL LF+RM +EG +  PN VT IGVL AC
Sbjct: 369 AYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFS--PNKVTMIGVLCAC 426

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            HAGL+D+G R F  M   + L+P+ EHY CMVDL  R G L EA   +  MP   + I+
Sbjct: 427 THAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAII 486

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            G LLGAC+     ++++ V+  L+E+E ++SGN+ + S I+A    W+  A  R  MR 
Sbjct: 487 WGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRS 546

Query: 544 KGVSKTPGCSWIGIDD 559
            G  K  G S I +++
Sbjct: 547 IGTKKPSGASSIEVNN 562



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 172/349 (49%), Gaps = 42/349 (12%)

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           +++  Y + G ++ AR +FD++  ++LVSW  ++SG+++ G A+EA+ LF +M +     
Sbjct: 254 TMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKL 313

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D  T++S+L +C + G L LG+ +   +  N       + +AL+DMY KCG L  A  VF
Sbjct: 314 DNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVF 373

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           + + NKDVV+WNAM+   A +G   +A+ LF RMK  G +P+K+T+IGVL AC   G   
Sbjct: 374 NDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGL-- 431

Query: 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVF----EDMPVTNEVS-WNAMISALAFNGRAH 393
                                 IDD ++ F     D  +  EV  +  M+  L   GR  
Sbjct: 432 ----------------------IDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLE 469

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452
           EA+ L   M        PN + +  +L AC     V+  R + D +     L P  S ++
Sbjct: 470 EAIRLIRNM-----PMAPNAIIWGTLLGACRMHNAVELAREVLDHLVE---LEPTDSGNF 521

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
           S + ++YA AG     W+ V     ++  I      GA   + N +V +
Sbjct: 522 SMLSNIYAAAGD----WNCVANTRLRMRSIGTKKPSGASSIEVNNEVHE 566


>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 1 [Cucumis sativus]
 gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like isoform 2 [Cucumis sativus]
          Length = 517

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 275/498 (55%), Gaps = 25/498 (5%)

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           ++ P  + FN ++  L  +     + L LY QM R     ++FT+ +   +C  L     
Sbjct: 23  LTNPKPHIFNPLLGSLVNSIFP-ENGLFLYNQMLRYPSSHNHFTFTYALKACCFLHQTQK 81

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G+ +H+ + K G   D  + +SL+  Y   G + SA  +FD I + D+VSW S+ISG SK
Sbjct: 82  GLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSK 141

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           +G+ KEA+  F  M      P+  TLV+ L +C  L  L LGK + G  ++   + N  +
Sbjct: 142 LGFEKEALSKFLSMNVR---PNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVIL 198

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG- 316
            +AL+D Y +C  L  A  +F+ M  +DVV+W  MI  YAQ+GL  EA+ +F  M + G 
Sbjct: 199 ENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGE 258

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------------CGSI 361
             P++ TL+ VLSAC+SI AL LG+WV  Y + R   HD+                CG++
Sbjct: 259 AIPNEATLVNVLSACSSISALHLGQWVHSYINSR---HDVIIDGNVGNALINMYVKCGNM 315

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           + A+ +F+ +   + VSW+ +IS LA NG   +A +LF  M   G    P+D+TF+G+LS
Sbjct: 316 EMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHG--VSPDDITFLGLLS 373

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC H GL+++G  +F+ M   + + P+  HY+CMVD+Y +AG L EA  F++ MP + + 
Sbjct: 374 ACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAFIKEMPMEAEG 433

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
            V GALL ACQ   N    ++V + LL  +    G + + S  +A    W+D+  +R  M
Sbjct: 434 PVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVGTFALLSNTYACCDRWNDANDVRVAM 493

Query: 542 REKGVSKTPGCSWIGIDD 559
           R +G+ K  G SWI + D
Sbjct: 494 RSRGLKKMAGRSWIEMVD 511



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 210/384 (54%), Gaps = 30/384 (7%)

Query: 31  LKKCPSTKTVQ---QIHTQMLIN------FIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           LK C      Q   +IH  ++ +      FIQ  + L   I+D  D + ASL+F  I  P
Sbjct: 70  LKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQN-SLLHFYILD-GDVSSASLIFDSIPDP 127

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I GL+    K     +   +   + ++P++ T      +C++L  L  G ++
Sbjct: 128 DVVSWTSIISGLS----KLGFEKEALSKFLSMNVRPNSTTLVTALSACSSLRCLKLGKAI 183

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    +   +E+  + ++L+  Y RC  L SA  +F+++ +RD+VSW +MI GY++ G  
Sbjct: 184 HGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLC 243

Query: 202 KEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV-VKNKMDLNFYMGS 259
           +EAV +F  M    E +P+E TLV+VL +C  +  L LG+WV  ++  ++ + ++  +G+
Sbjct: 244 EEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGN 303

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALI+MY KCG +  A  +F A+ +KD+V+W+ +I+  A NGL  +A +LF+ M   GV+P
Sbjct: 304 ALINMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSP 363

Query: 320 DKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKV 367
           D IT +G+LSAC+  G ++ G  V     D Y     +RH     D++   G +D+A   
Sbjct: 364 DDITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAF 423

Query: 368 FEDMPVTNEVS-WNAMISALAFNG 390
            ++MP+  E   W A++ A   +G
Sbjct: 424 IKEMPMEAEGPVWGALLHACQLHG 447


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/519 (32%), Positives = 288/519 (55%), Gaps = 20/519 (3%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQMK 111
           F++  ++D+     D   A  +F +I   N  ++  M+ G L     K    L L+ +M+
Sbjct: 163 FVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAK--EGLVLFNEMR 220

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
           +  + P  +T   V ++C  L +L+ G  +H SV K GL  +  ++ +++ MY +CG+ +
Sbjct: 221 QESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAE 280

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            AR+VFDE+   DLV W +MI GY++ G   +A+ LF   +    +P+ +T+ +VL +  
Sbjct: 281 DARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASA 340

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            L +L LG+ + G  VK     N  + +AL+DMY KC AL  A+ +F  ++NKDVVTWN+
Sbjct: 341 QLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNS 400

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           +I  YA+N + ++A+MLF+ M+  G  PD I+++  LSAC  +G L +GK    YA +  
Sbjct: 401 LIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHA 460

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
              +I+           C  +  A +VF +M   N V+W AMI      G +  ++ LF 
Sbjct: 461 FMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFN 520

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M K+    +PN+  F  +LS C H G+V  G++ F+ M+  F + P  +HY+CMVD+ A
Sbjct: 521 EMLKDN--IQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLA 578

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG+L EA +F+++MP + D  +  A L  C+     + ++  +  ++ +        V+
Sbjct: 579 RAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVM 638

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            S ++ +   WD S  +R LM+E+G+ K PGCS +G+++
Sbjct: 639 MSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSVGLEN 677



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 246/485 (50%), Gaps = 23/485 (4%)

Query: 30  LLKKCPSTKTVQQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYA 85
           LL  C +  +++ +H ++L    +  ++    LL     L D   A  +  +   P+ Y 
Sbjct: 34  LLPACTTLPSLRALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYT 93

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           + V + G   A  +++ ++ ++  M+R     + D         +        +G  +H 
Sbjct: 94  YKVAL-GWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHC 152

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            V K G   D  V ++L+ MYA+ G L +ARKVFD I +R++VSW SM+SG  + G AKE
Sbjct: 153 DVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKE 211

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            + LF  MR+E  LP E T+ SVL +C  LG L  G+ + G V+K+ +  N ++ +A++D
Sbjct: 212 GLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLD 271

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG    AR+VFD +   D+V W  MI  Y QNG   +A++LF   K+  + P+ +T
Sbjct: 272 MYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVT 331

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRG-LRHDIF----------CGSIDDALKVFEDMP 372
           +  VLSA A +  L LG+ +   + + G + +D+           C ++ DA  +F  + 
Sbjct: 332 IATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVL 391

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + V+WN++I+  A N    +AL+LF  M  +G  + P+ ++ +  LSACV  G +  G
Sbjct: 392 NKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQG--SLPDAISVVNALSACVCLGDLLIG 449

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
            + F   +     +      + +++LY +   L  A      M ++ + +  GA++G   
Sbjct: 450 -KCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDR-NTVTWGAMIGGYG 507

Query: 493 KQKNT 497
            Q ++
Sbjct: 508 MQGDS 512


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/444 (38%), Positives = 260/444 (58%), Gaps = 16/444 (3%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C +L  LN G  +H+ +      +D  + ++L+ +YA+CG L  ARK+FDE+  RD+V+W
Sbjct: 25  CTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTW 84

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG--DLVLGKWVEGFV 246
            ++I+GYS+    ++A+ L   M      P++ TL S+L +   +G  D++ G+ + G  
Sbjct: 85  TALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLC 144

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           ++   D N Y+  A++DMY +C  L  A+ +FD MV+K+ V+WNA+I  YA+ G  ++A 
Sbjct: 145 LRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAF 204

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG------- 359
            LF+ M    V P   T   VL ACAS+G+L+ GKWV     + G +   F G       
Sbjct: 205 CLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMY 264

Query: 360 ----SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
               SI+DA KVF+ +   + VSWN+M++  + +G    AL  FE M +   A  PND+T
Sbjct: 265 AKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA--PNDIT 322

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+ VL+AC HAGL+DEGR  FD+M   + + P+  HY  MVDL  RAGHL  A  F+  M
Sbjct: 323 FLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEM 381

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P K    V GALLGAC+  KN ++     + + E++S   G +V+   I+A    W+D+A
Sbjct: 382 PIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAA 441

Query: 536 KMRALMREKGVSKTPGCSWIGIDD 559
           K+R +M+E GV K P CSW+ +++
Sbjct: 442 KVRKMMKESGVKKEPACSWVEMEN 465



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/383 (31%), Positives = 200/383 (52%), Gaps = 22/383 (5%)

Query: 24  REKLLSLLKKCPSTKTVQQ---IHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFH 76
           RE   +LLK+C     + +   IH  +L +  +      N LL       D  YA  LF 
Sbjct: 15  REICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFD 74

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           ++S  +   +  +I G +    +   +L L  +M R+GLKP+ FT   +  + + + + +
Sbjct: 75  EMSSRDVVTWTALITGYSQH-DRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTD 133

Query: 137 --HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
              G  +H    + G D + +VS +++ MYARC  L+ A+ +FD +  ++ VSWN++I+G
Sbjct: 134 VLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAG 193

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y++ G   +A  LF  M  E   P   T  SVL +C  +G L  GKWV   ++K    L 
Sbjct: 194 YARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV 253

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++G+ L+DMY K G++  A++VFD +  +DVV+WN+M+T Y+Q+GL   A+  F  M  
Sbjct: 254 AFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLR 313

Query: 315 AGVNPDKITLIGVLSACASIGALDLGK----WVDKYASQRGLRHDIF-------CGSIDD 363
             + P+ IT + VL+AC+  G LD G+     + KY  +  + H +         G +D 
Sbjct: 314 TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 364 ALKVFEDMPVTNEVS-WNAMISA 385
           A++   +MP+    + W A++ A
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGA 396


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 271/470 (57%), Gaps = 16/470 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+L+ +M+R   +P++ +      +C+ LL L  G  +H    K   + D++V+ +L+ 
Sbjct: 191 ALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVD 250

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY RC  L+ AR+VF ++R + LV+WNSMI GY   G +K  VEL  RM  E   P + T
Sbjct: 251 MYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTT 310

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L S+L +C    +L+ GK+V G+V+++ +D + Y+  +LID+Y KCG +  A  VF    
Sbjct: 311 LTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVF-LKT 369

Query: 283 NKDVV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
            KDVV +WN MI+ Y   G   +A+ ++++M   GV PD +T   VLS C+ + AL+ GK
Sbjct: 370 QKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGK 429

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +    S+  L  D             CG++ +A ++F  +P  + VSW  MISA   +G
Sbjct: 430 QIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHG 489

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +  EAL  F+ M K G   +P+ VTF+ VLSAC HAGL+DEG + F  M S +G+    E
Sbjct: 490 QPREALYHFDEMQKFG--VKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIE 547

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLE 509
            YSC++D+  RAG L EA+  +++ PE  D   +L  L  AC   ++  +   + +LL+E
Sbjct: 548 QYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVE 607

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
               ++  Y +   ++A+ + WD + ++R  M+E G+ K PGCSWI +++
Sbjct: 608 KYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMNE 657



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 249/473 (52%), Gaps = 24/473 (5%)

Query: 26  KLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           KLLSLL++C +TK+++Q   +H ++L   ++    L   +I++    KD   A L+F  I
Sbjct: 5   KLLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENI 64

Query: 79  S-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALN 136
             R + Y +N ++ G +     +  +LK++ ++    +  PD+FTYP V  +   L    
Sbjct: 65  DIRSDVYIWNSLVSGYSKN-SMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREF 123

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H+ V K G   D  V+ SL+ MYA+    + + +VFDE+ ERD+ SWN++IS + 
Sbjct: 124 LGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFY 183

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G A++A+ELFGRM   +F P+ +++   + +C  L  L  GK +    +K + +L+ Y
Sbjct: 184 QRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEY 243

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + SAL+DMYG+C  L  AR VF  M  K +V WN+MI  Y   G S   + L NRM   G
Sbjct: 244 VNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEG 303

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
             P + TL  +L AC+    L  GK+V  Y  +  +  DI+           CG +  A 
Sbjct: 304 TRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAE 363

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VF         SWN MIS     G   +A+ ++++M   G   +P+ VTF  VLS C  
Sbjct: 364 TVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVG--VQPDIVTFTSVLSTCSQ 421

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              +++G+++   +S S  L       S ++D+Y++ G++ EA      +P+K
Sbjct: 422 LAALEKGKQIHLSISES-RLETDELLLSALLDMYSKCGNVKEASRIFNSIPKK 473


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 285/495 (57%), Gaps = 15/495 (3%)

Query: 74   LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            LF ++S P+  ++N MI G         + L+++ QM  LG++ D  T   V ++ AN+ 
Sbjct: 527  LFDELSEPDVVSWNSMINGCVVNGFS-GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIG 585

Query: 134  ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
             L+ G ++H    K    E+   S++L+ MY++CG L+ A +VF ++ +  +VSW S I+
Sbjct: 586  NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIA 645

Query: 194  GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
             Y + G   +A+ LF  M+ +   PD  T+ S++ +C     L  G+ V  +V+KN M  
Sbjct: 646  AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGS 705

Query: 254  NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
            N  + +ALI+MY KCG++  AR VF  +  KD+V+WN MI  Y+QN L NEA+ LF  M+
Sbjct: 706  NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765

Query: 314  YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
                 PD IT+  VL ACA + ALD G+ +  +  +RG   D+            CG + 
Sbjct: 766  -KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 824

Query: 363  DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
             A  +F+ +P  + +SW  MI+    +G  +EA+  F  M   G    P++ +F  +L+A
Sbjct: 825  LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAG--IEPDESSFSVILNA 882

Query: 423  CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
            C H+GL++EG + F+ M +  G+ PK EHY+C+VDL AR G+LS+A+ F+E MP K D  
Sbjct: 883  CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 942

Query: 483  VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
            + G LL  C+   +  ++++V + + E+E  N+  YV+ + ++A  + W++  K+R  M+
Sbjct: 943  IWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQ 1002

Query: 543  EKGVSKTPGCSWIGI 557
            ++G  + PGCSWI +
Sbjct: 1003 KRGFKQNPGCSWIEV 1017



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 244/471 (51%), Gaps = 29/471 (6%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRP 81
           S+L+ C   K+++   ++H+ ++ N I     L  +++    +  D      +F +I   
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             + +N+++         +  S+ L+ +M++LG+  + +T+  V    A L  +     V
Sbjct: 434 KVFLWNLLMSEYAKIGN-FRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V K+G   +  V +SLI  Y + G ++SA  +FDE+ E D+VSWNSMI+G    G++
Sbjct: 493 HGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
              +E+F +M       D  TLVSVL +  ++G+L LG+ + GF VK          + L
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTL 612

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG L  A  VF  M +  +V+W + I AY + GL ++AI LF+ M+  GV PD 
Sbjct: 613 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDI 672

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFED 370
            T+  ++ ACA   +LD G+ V  Y  + G+  ++            CGS+++A  VF  
Sbjct: 673 YTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSK 732

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +PV + VSWN MI   + N   +EAL LF  M K+    +P+D+T   VL AC     +D
Sbjct: 733 IPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ---FKPDDITMACVLPACAGLAALD 789

Query: 431 EGRRLFD--LMSSSFGLIPKSEHYSC-MVDLYARAGHLSEAWDFVERMPEK 478
           +GR +    L    F  +    H +C +VD+YA+ G L  A    + +P+K
Sbjct: 790 KGREIHGHILRRGYFSDL----HVACALVDMYAKCGLLVLAQLLFDMIPKK 836



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 197/402 (49%), Gaps = 18/402 (4%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           +Y  V   CA   +L  G  VHS +   G+  D+ +   L+ MY  CG L   RK+FD+I
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
               +  WN ++S Y+K+G  +E+V LF +M++   + +  T   VL     LG +   K
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V G+V+K     N  + ++LI  Y K G +  A  +FD +   DVV+WN+MI     NG
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNG 550

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            S   + +F +M   GV  D  TL+ VL A A+IG L LG+ +  +  +     ++    
Sbjct: 551 FSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN 610

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG+++ A +VF  M  T  VSW + I+A    G   +A+ LF+ M  +G   
Sbjct: 611 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG--V 668

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           RP+  T   ++ AC  +  +D+GR +   +  + G+       + ++++YA+ G + EA 
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEAR 727

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
               ++P K D +    ++G         +    ++L L+++
Sbjct: 728 LVFSKIPVK-DIVSWNTMIGG---YSQNSLPNEALELFLDMQ 765



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 146/299 (48%), Gaps = 18/299 (6%)

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+ I+ + +MG  + A+EL  + +  E   +  +  SVL  C +   L  GK V   ++ 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N + ++  +G+ L+ MY  CG LV  R++FD ++N  V  WN +++ YA+ G   E++ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F +M+  GV  +  T   VL   A++G +   K V  Y  + G   +             
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            G ++ A  +F+++   + VSWN+MI+    NG +   L +F +M   G     +  T +
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG--VEVDLTTLV 575

Query: 418 GVLSACVHAGLVDEGRRLFDL-MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            VL A  + G +  GR L    + + F    +    + ++D+Y++ G+L+ A +   +M
Sbjct: 576 SVLVAWANIGNLSLGRALHGFGVKACFS--EEVVFSNTLLDMYSKCGNLNGATEVFVKM 632


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 296/548 (54%), Gaps = 22/548 (4%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LK C     ++   +IH+   +  ++   F+   ++D          A  LF  +S  +
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             A+N MI G  + +     +++L  QM+  G+ P++ T   V  +     AL HG ++H
Sbjct: 175 VVAWNAMIAG-CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALH 233

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
               +   D    V   L+ MYA+C  L  ARK+FD +  R+ VSW++MI GY      K
Sbjct: 234 GYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMK 293

Query: 203 EAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           EA+ELF +M  ++ + P  +TL SVL +C  L DL  G+ +  +++K    L+  +G+ L
Sbjct: 294 EALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTL 353

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY KCG +  A R FD M  KD V+++A+++   QNG +  A+ +F  M+ +G++PD 
Sbjct: 354 LSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDL 413

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T++GVL AC+ + AL  G     Y   RG   D             CG I  A +VF  
Sbjct: 414 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNR 473

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWNAMI     +G   EAL LF  +   G   +P+D+TFI +LS+C H+GLV 
Sbjct: 474 MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALG--LKPDDITFICLLSSCSHSGLVM 531

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EGR  FD MS  F ++P+ EH  CMVD+  RAG + EA  F+  MP + D  +  ALL A
Sbjct: 532 EGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN ++ + V + +  +   ++GN+V+ S I++    WDD+A +R   ++ G+ K P
Sbjct: 592 CRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIP 651

Query: 551 GCSWIGID 558
           GCSWI I+
Sbjct: 652 GCSWIEIN 659



 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 251/477 (52%), Gaps = 33/477 (6%)

Query: 23  LREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
           ++   L LL+ C  +K++   ++IH   L N     + +L ++  L         A  LF
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 76  HQISRPNEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            +I  P+   +N +IR    AW   +  ++ LY+ M  LG++P+ +TYPFV  +C+ LLA
Sbjct: 67  DEIPNPSVILWNQIIRAY--AWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  GV +HS     GL+ D  V  +L+  YA+CG L  A+++F  +  RD+V+WN+MI+G
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            S  G   +AV+L  +M+EE   P+  T+V VL + G+   L  GK + G+ V+   D  
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             +G+ L+DMY KC  L+ AR++FD M  ++ V+W+AMI  Y  +    EA+ LF++M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 315 A-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
              ++P  +TL  VL ACA +  L  G+ +  Y  + G   DI            CG ID
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVID 364

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA++ F++M   + VS++A++S    NG A  AL +F  M   G    P+  T +GVL A
Sbjct: 365 DAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG--IDPDLTTMLGVLPA 422

Query: 423 CVHAGLVDEGRRLFDLMSSSF----GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           C H   +  G       S  +    G    +   + ++D+Y++ G +S A +   RM
Sbjct: 423 CSHLAALQHG-----FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 275/506 (54%), Gaps = 18/506 (3%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTY 122
            +    AS +F ++   +  ++  MI        W K    LK+  +M+  G+ P+  T 
Sbjct: 169 FRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKV---LKMLSEMQAEGIIPNKVTI 225

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             +  +C    A++ G  V++ V K G++ D  + ++LI+MY +CG L  A + F  +  
Sbjct: 226 ISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPA 285

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           R   SWN++I G+ +    KEA+ +F  M      PD ITLVSVL +C  LG+L  G  V
Sbjct: 286 RYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHV 345

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             ++  N +  +  + ++LI+MY KCG +  A RVF  M  KDVV+W  M+  Y +    
Sbjct: 346 HSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQF 405

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
             A  LF  MK A V   ++ L+ +LSAC+ +GALD G+ +  Y  +  +  D+      
Sbjct: 406 TMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESAL 465

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG ID A ++F  M     +SWNAMI  LA NG   EA+ LF++M  E    +P
Sbjct: 466 VDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQM-LELQDPKP 524

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           + +T   VL AC H G+VDEG R F LM SS G++P +EHY C+VDL  RAG L EA+ F
Sbjct: 525 DGITLKAVLGACAHVGMVDEGLRYFYLM-SSLGVVPDTEHYGCIVDLLGRAGMLDEAFHF 583

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +++MP + + ++ G+LL AC+     D+ + + Q ++ +  ++ G +V+ S + A    W
Sbjct: 584 IKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQW 643

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGI 557
           DD   +R LM  +G+ KTPG S + +
Sbjct: 644 DDVEHVRGLMGSRGIEKTPGHSSVQV 669



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 157/547 (28%), Positives = 267/547 (48%), Gaps = 28/547 (5%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLF 75
           +R  LL+ L  C S   + ++H +++   +   +F+  R+I L        D  YA  +F
Sbjct: 16  IRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVF 75

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
             +++PN + +N MIRG ++  +    +L ++ +M+R G+ PDN+T   V  + A    L
Sbjct: 76  DGMAQPNAFVWNCMIRGYSSC-EAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGL 134

Query: 136 ---NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
              ++G ++H+ V +IG   D  V   L+  Y     ++ A KVF+E+ ERD+VSW SMI
Sbjct: 135 KWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMI 194

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           S  ++ G+  + +++   M+ E  +P+++T++S+L +CG    +  G+WV   V K  ++
Sbjct: 195 SACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIE 254

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + +ALI MY KCG L  A   F AM  +   +WN +I  + QN    EA+ +F  M
Sbjct: 255 ADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM 314

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
              GV PD ITL+ VLSACA +G L  G  V  Y    G+  D             CG +
Sbjct: 315 LLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDM 374

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A +VF+ M   + VSW  M+       +   A  LFE M      A  +++  + +LS
Sbjct: 375 AAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVA--HEMALVSLLS 432

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC   G +D+GR +   +     +       S +VD+YA+ G +  A +   +M  K   
Sbjct: 433 ACSQLGALDKGREIHSYI-EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHK-QT 490

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSAKMRA 539
           +   A++G          +  +   +LE++        + + +   A++ M D+  +   
Sbjct: 491 LSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFY 550

Query: 540 LMREKGV 546
           LM   GV
Sbjct: 551 LMSSLGV 557


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/500 (35%), Positives = 274/500 (54%), Gaps = 18/500 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           AS +F ++   +  ++  MI        W K    LK+  +M+  G+ P+  T   +  +
Sbjct: 175 ASKVFEEMYERDVVSWTSMISACAQCGHWDKV---LKMLSEMQAEGIIPNKVTIISLLSA 231

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C    A++ G  V++ V K G++ D  + ++LI+MY +CG L  A + F  +  R   SW
Sbjct: 232 CGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSW 291

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++I G+ +    KEA+ +F  M      PD ITLVSVL +C  LG+L  G  V  ++  
Sbjct: 292 NTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKD 351

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N +  +  + ++LI+MY KCG +  A RVF  M  KDVV+W  M+  Y +      A  L
Sbjct: 352 NGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNL 411

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F  MK A V   ++ L+ +LSAC+ +GALD G+ +  Y  +  +  D+            
Sbjct: 412 FEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAK 471

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG ID A ++F  M     +SWNAMI  LA NG   EA+ LF++M  E    +P+ +T  
Sbjct: 472 CGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQM-LELQDPKPDGITLK 530

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VL AC H G+VDEG R F LM SS G++P +EHY C+VDL  RAG L EA+ F+++MP 
Sbjct: 531 AVLGACAHVGMVDEGLRYFYLM-SSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPI 589

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           + + ++ G+LL AC+     D+ + + Q ++ +  ++ G +V+ S + A    WDD   +
Sbjct: 590 EPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHV 649

Query: 538 RALMREKGVSKTPGCSWIGI 557
           R LM  +G+ KTPG S + +
Sbjct: 650 RGLMGSRGIEKTPGHSSVQV 669



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/547 (28%), Positives = 266/547 (48%), Gaps = 28/547 (5%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLF 75
           +R  LL+ L  C S   + ++H +++   +   +F+  R+I L        D  YA  +F
Sbjct: 16  IRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVF 75

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
             +++PN + +N MIRG ++  +    +L ++ +M+R G+ PDN+T   V  + A    L
Sbjct: 76  DGMAQPNAFVWNCMIRGYSSC-EAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGL 134

Query: 136 ---NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
              ++G ++H+ V +IG   D  V   L+  Y     +  A KVF+E+ ERD+VSW SMI
Sbjct: 135 KWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMI 194

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           S  ++ G+  + +++   M+ E  +P+++T++S+L +CG    +  G+WV   V K  ++
Sbjct: 195 SACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIE 254

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + +ALI MY KCG L  A   F AM  +   +WN +I  + QN    EA+ +F  M
Sbjct: 255 ADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM 314

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
              GV PD ITL+ VLSACA +G L  G  V  Y    G+  D             CG +
Sbjct: 315 LLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDM 374

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A +VF+ M   + VSW  M+       +   A  LFE M      A  +++  + +LS
Sbjct: 375 AAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVA--HEMALVSLLS 432

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC   G +D+GR +   +     +       S +VD+YA+ G +  A +   +M  K   
Sbjct: 433 ACSQLGALDKGREIHSYI-EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHK-QT 490

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSAKMRA 539
           +   A++G          +  +   +LE++        + + +   A++ M D+  +   
Sbjct: 491 LSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFY 550

Query: 540 LMREKGV 546
           LM   GV
Sbjct: 551 LMSSLGV 557


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/497 (36%), Positives = 282/497 (56%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + R +   +N MI G          +L+L+  M++ GL+PD+ T   +  +   L 
Sbjct: 305 LFGLMPRDDLVTWNGMISGCVQN-GLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELN 363

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  +H  + +     D  +  +L+ +Y +C  +  A+ VFD  +  D+V  ++MIS
Sbjct: 364 GFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMIS 423

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY     ++ AV++F  +      P+ + + S L +C  +  + +G+ + G+V+KN  + 
Sbjct: 424 GYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEG 483

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             Y+ SAL+DMY KCG L  +  +F  M  KD VTWN+MI+++AQNG   EA+ LF +M 
Sbjct: 484 RCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMI 543

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV  + +T+  +LSACA + A+  GK +     +  +R D+F           CG+++
Sbjct: 544 MEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLE 603

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            AL+VFE MP  NEVSWN++ISA   +G   E++ L   M +EG  A  + VTF+ ++SA
Sbjct: 604 LALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKA--DHVTFLALISA 661

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAG V EG RLF  M+  + + P+ EH SCMVDLY+RAG L +A  F+  MP K D  
Sbjct: 662 CAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAG 721

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL AC+  +N ++++   Q L +++  N G YV+ S I A    WD  +KMR LM+
Sbjct: 722 IWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMK 781

Query: 543 EKGVSKTPGCSWIGIDD 559
           +K V K PG SW+ +++
Sbjct: 782 DKKVQKIPGYSWVDVNN 798



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 156/537 (29%), Positives = 245/537 (45%), Gaps = 50/537 (9%)

Query: 26  KLLSLLKKCPSTKTVQ---QIHTQMLINFI-----QKPNFLLIRIIDL----KDFNYASL 73
           +LL+LL+ C +   +    +IH + + + +       P  L  R++ +    + F  A  
Sbjct: 38  RLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVA 97

Query: 74  LFHQISRPNE---YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG----LKPDNFTYPFVF 126
           +F  + R        +N +IRG T A     H L + + +K        +PD  T P+V 
Sbjct: 98  VFSSLPRAAAAAALPWNWLIRGFTMAGH---HRLAVLFYVKMWAHPSSPRPDGHTLPYVV 154

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SCA L AL+ G  VH +   +GLD D +V  +LI MYA  G LD AR+VFD + ERD V
Sbjct: 155 KSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCV 214

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
            WN M+ GY K G    AV LF  MR     P+  TL   L  C    DL+ G  +    
Sbjct: 215 LWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLA 274

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           VK  ++    + + L+ MY KC  L  A R+F  M   D+VTWN MI+   QNGL ++A+
Sbjct: 275 VKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDAL 334

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF  M+ +G+ PD +TL  +L A   +     GK +  Y  +     D+F         
Sbjct: 335 RLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIY 394

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             C  +  A  VF+     + V  + MIS    N  +  A+ +F  +   G   +PN V 
Sbjct: 395 FKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALG--IKPNAVM 452

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVDLYARAGHLSEAW 469
               L AC     +  G+ L        G + K+ +       S ++D+Y++ G L  + 
Sbjct: 453 VASTLPACASMAAMRIGQEL-------HGYVLKNAYEGRCYVESALMDMYSKCGRLDLSH 505

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
               +M  K DE+   +++ +  +    + +  + + ++ +E     N  ISS + A
Sbjct: 506 YMFSKMSAK-DEVTWNSMISSFAQNGEPEEALDLFRQMI-MEGVKYNNVTISSILSA 560



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 214/422 (50%), Gaps = 22/422 (5%)

Query: 17  LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYAS 72
           L   S+    LL  L +    K  ++IH  ++ N      FL+  ++D+    +D   A 
Sbjct: 345 LQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQ 404

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
            +F      +    + MI G     +    ++K++  +  LG+KP+         +CA++
Sbjct: 405 NVFDATKSIDVVIGSTMISGYVLN-RMSEAAVKMFRYLLALGIKPNAVMVASTLPACASM 463

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            A+  G  +H  V K   +   +V  +L+ MY++CG+LD +  +F ++  +D V+WNSMI
Sbjct: 464 AAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMI 523

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           S +++ G  +EA++LF +M  E    + +T+ S+L +C  L  +  GK + G ++K  + 
Sbjct: 524 SSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIR 583

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            + +  SALIDMYGKCG L  A RVF+ M  K+ V+WN++I+AY  +GL  E++ L   M
Sbjct: 584 ADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCM 643

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGS 360
           +  G   D +T + ++SACA  G +  G        ++Y  +  + H     D++   G 
Sbjct: 644 QEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGK 703

Query: 361 IDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +D A++   DMP   +   W A++ A     R H  + L E  S+E     P++  +  +
Sbjct: 704 LDKAMQFIADMPFKPDAGIWGALLHAC----RVHRNVELAEIASQELFKLDPHNCGYYVL 759

Query: 420 LS 421
           +S
Sbjct: 760 MS 761


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/535 (34%), Positives = 286/535 (53%), Gaps = 55/535 (10%)

Query: 76  HQISRPN------EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN-FTYPFVFIS 128
           HQI  P       + A+   IR   T  +     L     ++R GL P      P +  S
Sbjct: 22  HQIPSPPTTHLDPDRAYLATIRAAATTPRLV---LAACACLRRTGLPPPGPRALPALLRS 78

Query: 129 CANLLALNHGV-SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
            A  +     V   H+  F++G  +D  V  +L+  YA CG +  ARKVFD +  RD+VS
Sbjct: 79  AARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVS 138

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  M+  Y +    KEA+  F +M+    L D++ L +VL +CG +  L  GK +  +++
Sbjct: 139 WGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYML 198

Query: 248 KNKMDLNFYMGSALIDMYGKCGAL---------VP----------------------ARR 276
            + + +N ++ SALI++Y  C ++         +P                      AR 
Sbjct: 199 VSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARY 258

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +FD M  KDVV+W+AMI+ YA +   NEA+ LFN M+  G+ PD++T++ V+SACA++G+
Sbjct: 259 IFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGS 318

Query: 337 LDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           LD  KW+  +    GL           D+F  CG I+ AL +F +MP  N ++W +MI+A
Sbjct: 319 LDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITA 378

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G    AL LFE+M  EG    PN+VTF+ +L AC HAGLV EGR LF  M   +G+
Sbjct: 379 FAMHGDGKSALCLFEQMRNEG--VEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGI 436

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            PK EHY CMVDL  RA  + EA + +E M  + +  V G+LL AC    +  +     +
Sbjct: 437 EPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAK 496

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDP 560
            +L+++ ++ G  V+ SKI+      +D+ ++R +M+ +GVSK  G SW+ +++P
Sbjct: 497 KILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNEP 551


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/466 (36%), Positives = 273/466 (58%), Gaps = 13/466 (2%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+ +M+  GL PD+     +  +C  L A+  G+++     + G + D +VS+++I 
Sbjct: 217 ALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVID 276

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG    A +VF  +   D+VSW+++I+GYS+    +E+ +L+  M       + I 
Sbjct: 277 MYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIV 336

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
             SVL + G L  L  GK +  FV+K  +  +  +GSALI MY  CG++  A  +F+   
Sbjct: 337 ATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTS 396

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           +KD++ WN+MI  Y   G    A   F R+  A   P+ IT++ +L  C  +GAL  GK 
Sbjct: 397 DKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKE 456

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  Y ++ GL  ++            CG ++   KVF+ M V N  ++N MISA   +G+
Sbjct: 457 IHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQ 516

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             + L  +E+M +EG   RPN VTFI +LSAC HAGL+D G  L++ M + +G+ P  EH
Sbjct: 517 GEKGLAFYEQMKEEGN--RPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEH 574

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           YSCMVDL  RAG L  A+ F+ RMP   D  V G+LLGAC+     ++++ + + +L+++
Sbjct: 575 YSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLK 634

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + +SG+YV+ S ++A+ K W+D +K+R+++++KG+ K PG SWI +
Sbjct: 635 ADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQV 680



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 231/455 (50%), Gaps = 25/455 (5%)

Query: 31  LKKCPSTKTVQQIHTQMLINFIQKPNF---------LLIRIIDLKDFNYASLLFHQISRP 81
           LK  P+    + +H  +L+    +P           L+   ++     +A L F  +   
Sbjct: 37  LKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHK 96

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
              A+N ++RGL  A   ++ ++  Y+ M + G+ PDN+TYP V  +C++L AL  G  V
Sbjct: 97  PIIAWNAILRGLV-AVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWV 155

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H ++       + +V  ++I M+A+CG ++ AR++F+E+ +RDL SW ++I G    G  
Sbjct: 156 HETMHG-KTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGEC 214

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA+ LF +MR E  +PD + + S+L +CG L  + LG  ++   V++  + + Y+ +A+
Sbjct: 215 LEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAV 274

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMY KCG  + A RVF  MV  DVV+W+ +I  Y+QN L  E+  L+  M   G+  + 
Sbjct: 275 IDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNA 334

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           I    VL A   +  L  GK +  +  + GL  D+            CGSI +A  +FE 
Sbjct: 335 IVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFEC 394

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + + WN+MI      G    A   F R+   G   RPN +T + +L  C   G + 
Sbjct: 395 TSDKDIMVWNSMIVGYNLVGDFESAFFTFRRI--WGAEHRPNFITVVSILPICTQMGALR 452

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           +G+ +   ++ S GL       + ++D+Y++ G L
Sbjct: 453 QGKEIHGYVTKS-GLGLNVSVGNSLIDMYSKCGFL 486



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 166/316 (52%), Gaps = 13/316 (4%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y  S KLY  M  +GL  +      V  +   L  L  G  +H+ V K GL  D  V  +
Sbjct: 315 YQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSA 374

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI MYA CG +  A  +F+   ++D++ WNSMI GY+ +G  + A   F R+   E  P+
Sbjct: 375 LIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPN 434

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
            IT+VS+L  C  +G L  GK + G+V K+ + LN  +G++LIDMY KCG L    +VF 
Sbjct: 435 FITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFK 494

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M+ ++V T+N MI+A   +G   + +  + +MK  G  P+K+T I +LSAC+  G LD 
Sbjct: 495 QMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDR 554

Query: 340 G-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISAL 386
           G       ++ Y  +  + H     D+    G +D A K    MP+T + + + +++ A 
Sbjct: 555 GWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGAC 614

Query: 387 AFNGRAHEALLLFERM 402
             + +     LL ER+
Sbjct: 615 RLHNKVELTELLAERI 630



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS+  A   F  +P    ++WNA++  L   G   +A+  +  M + G    P++ T+  
Sbjct: 81  GSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHG--VTPDNYTYPL 138

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC-MVDLYARAGHLSEAWDFVERMPE 477
           VL AC     +  GR + + M    G    + +  C ++D++A+ G + +A    E MP+
Sbjct: 139 VLKACSSLHALQLGRWVHETMH---GKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPD 195

Query: 478 K 478
           +
Sbjct: 196 R 196


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 297/545 (54%), Gaps = 66/545 (12%)

Query: 35  PSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKD-----------FNYASLLFHQISRPN 82
           P+ KT++QIH  M+IN F    NFL   ++ +              NYA  LF QI +P+
Sbjct: 13  PNLKTLKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPD 72

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            + +NVMIRG + +      ++ LY +M R  +K D++T+PFV  +C  L  +N G +VH
Sbjct: 73  TFMYNVMIRGSSQSPNPL-RAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVH 131

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V ++G   +  V ++L+  +A+CG L+ A  +FD+  + D+V+W+S+I+GY++ G  K
Sbjct: 132 GMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLK 191

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            A +LF  M E                     DLV   W                 + +I
Sbjct: 192 VARKLFNEMPER--------------------DLV--SW-----------------NVMI 212

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
             Y K G +  AR +FD    KDVV+WNAMI  Y   GLS +A+ LFN M  AGV PD++
Sbjct: 213 TGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEV 272

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRH----------DIF--CGSIDDALKVFED 370
           TL+ +LSACA +G L+ GK V     +  +            D++  CG+I ++L VF  
Sbjct: 273 TLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWS 332

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   + +SWN++I  +A +G   E+L LF+ M +      PN++TF+GVL AC HAG +D
Sbjct: 333 ITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRT--KICPNEITFVGVLVACSHAGEID 390

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG + FDLMSS + + P   H  CMVD+  RAG L EA  F++ M  + + I+   LL A
Sbjct: 391 EGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAA 450

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   + ++++   + L  +   +SG+YV+ S ++A+   WD + K+R LM + GV+K  
Sbjct: 451 CKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIR 510

Query: 551 GCSWI 555
           G S++
Sbjct: 511 GSSFV 515


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 300/548 (54%), Gaps = 24/548 (4%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
           S+LK C +     +IH   L        ++   +I L    K    A +LF ++   +  
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N MI G   +      +L L   ++ +    D+ T   +  +C      N GV++HS 
Sbjct: 218 SWNAMISGYCQSGNA-KEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSY 272

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K GL+ +  VS+ LI +YA  G+L   +KVFD +  RDL+SWNS+I  Y        A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALID 263
           + LF  MR     PD +TL+S+      LGD+   + V+GF ++    L +  +G+A++ 
Sbjct: 333 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKI 322
           MY K G +  AR VF+ + N DV++WN +I+ YAQNG ++EAI ++N M+  G +  ++ 
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T + VL AC+  GAL  G  +     + GL  D+F           CG ++DAL +F  +
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  N V WN +I+   F+G   +A++LF+ M  EG   +P+ +TF+ +LSAC H+GLVDE
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG--VKPDHITFVTLLSACSHSGLVDE 570

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G+  F++M + +G+ P  +HY CMVD+Y RAG L  A  F++ M  + D  + GALL AC
Sbjct: 571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N D+ +   + L E+E  + G +V+ S ++A+   W+   ++R++   KG+ KTPG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690

Query: 552 CSWIGIDD 559
            S + +D+
Sbjct: 691 WSSMEVDN 698



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 247/480 (51%), Gaps = 27/480 (5%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
           +L + C + ++ + +H +++++   +   +  ++++L     +   A   F  I   + Y
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           A+N+MI G   A             M   GL PD  T+P V  +C  ++    G  +H  
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCL 175

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K G   D +V+ SLI +Y+R   + +AR +FDE+  RD+ SWN+MISGY + G AKEA
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + L   +R      D +T+VS+L +C + GD   G  +  + +K+ ++   ++ + LID+
Sbjct: 236 LTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y + G L   ++VFD M  +D+++WN++I AY  N     AI LF  M+ + + PD +TL
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351

Query: 325 IGVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMP 372
           I + S  + +G +   + V  +  ++G    DI  G+           +D A  VF  +P
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
            T+ +SWN +IS  A NG A EA+ ++  M +EG  A  N  T++ VL AC  AG + +G
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA-ANQGTWVSVLPACSQAGALRQG 470

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
            +L   +  + GL       + + D+Y + G L +A     ++P +V+ +    L+ AC 
Sbjct: 471 MKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI-ACH 527


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 280/496 (56%), Gaps = 24/496 (4%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N +A+N +I G   A    +   + Y +M+ +G+ PD FT+P V  +C   + +     +
Sbjct: 41  NVFAYNAIIAGFV-ANGLAADGFQFYKRMRSVGVMPDKFTFPCVVRACCEFMEVR---KI 96

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  +FK+GL+ +  V  +L+  Y +    + A KVF+E+ ERD+V WN+MI+GY+K+G+ 
Sbjct: 97  HGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHL 156

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            +AV +F RM EE       T  S+L     +GD+  G+ + G V K        + +AL
Sbjct: 157 NKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNAL 216

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMYGKC     A  +F+ +  KD+ +WN++I+A+ Q    +  + LF +M  + V PD 
Sbjct: 217 IDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDV 276

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRH--------------DIF--CGSIDDAL 365
           IT+  VL AC+ + AL  G+ +  Y    GL                D++  CG + +A 
Sbjct: 277 ITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNAD 336

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +F+ M   +  SWN MI   A +G   EAL +F RM +     +P+ VTF+GVLSAC H
Sbjct: 337 IIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCE--AQIKPDVVTFVGVLSACSH 394

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AG V +GR     M   FG+IP  EHY+C++D+  RAGHL EA+D  +R+P + + I+  
Sbjct: 395 AGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWM 454

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSN--SGNYVISSKIFANLKMWDDSAKMRALMRE 543
           ALLGAC+   N ++   V + + ++E  +  SG+Y++ S ++  +  ++++ ++R  M+E
Sbjct: 455 ALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKE 514

Query: 544 KGVSKTPGCSWIGIDD 559
           + V KTPGCSWI + D
Sbjct: 515 QNVKKTPGCSWIELKD 530



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 172/328 (52%), Gaps = 25/328 (7%)

Query: 159 SLITMYARCGKLDSARKVF-DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           SLI MY+RC +++ A  VF D   ER++ ++N++I+G+   G A +  + + RMR    +
Sbjct: 15  SLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVM 74

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           PD+ T   V+ +C +  ++   + + G + K  ++LN ++GSAL++ Y K      A +V
Sbjct: 75  PDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKV 131

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+ +  +DVV WNAMI  Y + G  N+A+++F RM   G++  + T   +LS   S+G +
Sbjct: 132 FEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDI 191

Query: 338 DLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           + G+ +    ++ G            D++  C   +DAL +FE +   +  SWN++ISA 
Sbjct: 192 NNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAH 251

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
                    L LF +M   G    P+ +T   VL AC H   +  GR +   M  + GL 
Sbjct: 252 EQCDDHDGTLRLFGKML--GSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVN-GL- 307

Query: 447 PKSEH------YSCMVDLYARAGHLSEA 468
            K+E+       + ++D+YA+ G +  A
Sbjct: 308 GKNENGDDVLLNNAIMDMYAKCGCMKNA 335



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 31/268 (11%)

Query: 259 SALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           ++LI+MY +C  +  A  VF D    ++V  +NA+I  +  NGL+ +    + RM+  GV
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALK 366
            PDK T   V+ AC     +   + +     + GL  ++F GS            +DA K
Sbjct: 74  MPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VFE++P  + V WNAMI+     G  ++A+++F+RM +EG     +  T   +LS     
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEG--ISLSRFTTTSILSILTSM 188

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSC------MVDLYARAGHLSEAWDFVERMPEKVD 480
           G ++ GR +        G++ K  + SC      ++D+Y +  H  +A    E + EK D
Sbjct: 189 GDINNGRAI-------HGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEK-D 240

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLL 508
                +++ A ++  + D + R+   +L
Sbjct: 241 LFSWNSIISAHEQCDDHDGTLRLFGKML 268


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 303/551 (54%), Gaps = 22/551 (3%)

Query: 27  LLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQIS 79
           L S+++ C     V+   Q+H  ++ +   +  ++   +ID    N     A L+F Q+S
Sbjct: 154 LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS 213

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
                 +  +I G T    + + SL+L+ QM+   + PD +    V  +C+ L  L  G 
Sbjct: 214 EKTAVTWTTIIAGYTKC-GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H+ V + G + D  V + LI  Y +C ++ + RK+FD++  ++++SW +MISGY +  
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 332

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +  EA++LFG M    + PD     SVL SCG    L  G+ V  + +K  ++ + ++ +
Sbjct: 333 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKN 392

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LIDMY K   L+ A++VFD M  ++V+++NAMI  Y+     +EA+ LF+ M+     P
Sbjct: 393 GLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKP 452

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           ++ T   +++A +++ +L  G+       + GL    F           CGSI++A K+F
Sbjct: 453 NEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMF 512

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
                 + V WN+MIS  A +G A EAL +F  M KEG   +PN VTF+ VLSAC HAG 
Sbjct: 513 NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG--IQPNYVTFVAVLSACSHAGR 570

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G   F+ M   FG+ P +EHY+C+V L  R+G L EA +F+E+MP +   IV  +LL
Sbjct: 571 VEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLL 629

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+   N ++ +   ++ +  +  +SG+Y++ S IFA+  MW D  K+R  M    V K
Sbjct: 630 SACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVK 689

Query: 549 TPGCSWIGIDD 559
            PG SWI +++
Sbjct: 690 EPGRSWIEVNN 700



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/444 (31%), Positives = 230/444 (51%), Gaps = 24/444 (5%)

Query: 43  IHTQMLINFIQKPNFL---LIRIIDLKD-FNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
           IH Q++++ +Q   FL   LI +    D  + A ++F ++   N   ++ M+   +   Q
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQ--Q 128

Query: 99  KYSH-SLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            YS  +L ++  ++R  G  P+ F    V  +C  L  +  G  +H  V + G D+D +V
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SLI  Y++ G ++ AR VFD++ E+  V+W ++I+GY+K G +  ++ELF +MRE   
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           +PD   + SVL +C  L  L  GK +  +V++   +++  + + LID Y KC  +   R+
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +FD MV K++++W  MI+ Y QN    EA+ LF  M   G  PD      VL++C S  A
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368

Query: 337 LDLGKWVDKYASQRGLRHDIFC--GSID---------DALKVFEDMPVTNEVSWNAMISA 385
           L+ G+ V  Y  +  L  D F   G ID         DA KVF+ M   N +S+NAMI  
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFG 444
            +   +  EAL LF  M       +PN+ TF  +++A  +   +  G++  + L+     
Sbjct: 429 YSSQEKLSEALELFHEMRVR--LQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLD 486

Query: 445 LIPKSEHYSCMVDLYARAGHLSEA 468
             P   +   +VD+YA+ G + EA
Sbjct: 487 FCPFVTN--ALVDMYAKCGSIEEA 508



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 209/418 (50%), Gaps = 64/418 (15%)

Query: 130 ANLLALN-------HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           ANLL L+       H   +H  +   GL  D  +++ LI + ++  ++D+AR VFD++  
Sbjct: 53  ANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPH 112

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ++L++W+SM+S YS+ GY++EA+ +F  + R+    P+E  L SV+ +C  LG +  G  
Sbjct: 113 KNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 172

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + GFVV++  D + Y+G++LID Y K G +  AR VFD +  K  VTW  +I  Y + G 
Sbjct: 173 LHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGR 232

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           S  ++ LF +M+   V PD+  +  VLSAC+ +  L+ GK +  Y  +RG   D+     
Sbjct: 233 SAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNV 292

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  C  +    K+F+ M V N +SW  MIS    N    EA+ LF  M++ G   +
Sbjct: 293 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGW--K 350

Query: 411 PNDVTFIGVLSAC-----------VHA---------------GLVD---------EGRRL 435
           P+      VL++C           VHA               GL+D         + +++
Sbjct: 351 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKV 410

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP---EKVDEIVLGALLGA 490
           FD+M+    +      Y+ M++ Y+    LSEA +    M    +K +E    AL+ A
Sbjct: 411 FDVMAEQNVI-----SYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITA 463


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 286/565 (50%), Gaps = 74/565 (13%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYS------------------------- 101
           D + A  +F  I RP+ + +N MI G +  +  Y                          
Sbjct: 196 DVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQ 255

Query: 102 -----HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
                  L ++ +M   G  P+  TY  V  +CA+   L  G  +H+ + ++    D   
Sbjct: 256 HGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVF 315

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
            + LI MYA+CG LD A++VF  +RE D +SWNS+I+G    G  ++A+ LF +MR    
Sbjct: 316 GNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSV 375

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG------- 269
           + DE  L ++LG C        G+ + G+ +K+ M  +  +G+A+I MY KCG       
Sbjct: 376 VLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADL 435

Query: 270 --ALVP----------------------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
              L+P                      AR  FD M  +++VTWN+M++ Y QNG S E 
Sbjct: 436 VFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEG 495

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + L+  M+  GV PD IT    + ACA +  + LG  V  +A++ GL  ++         
Sbjct: 496 LKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM 555

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG I +A   F+ +   + +SWNAM++A A NG   + +  FE M K     +PN +
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKT--ECKPNHI 613

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           +++ VLS C H GLV EG+  FD M+  FG+ P +EH+SCMVDL  RAG L +A D +E 
Sbjct: 614 SYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEG 673

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP K +  V  ALLG+C+   +  +++   + L+E++   S  YV+ S +++     D+ 
Sbjct: 674 MPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNV 733

Query: 535 AKMRALMREKGVSKTPGCSWIGIDD 559
           A MR LM+ KG+  + GCSWI +D+
Sbjct: 734 ADMRKLMKVKGIRTSRGCSWIEVDN 758


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/473 (37%), Positives = 270/473 (57%), Gaps = 27/473 (5%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR 166
           Y +M + G+ PD FTYP V  +CA    L  G +VH      G+D +    ++L++MYA+
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP-------- 218
           CG L SARKVFD + +RD+VSWNSMIS Y+ +G   EA+ELF RMR+E   P        
Sbjct: 198 CGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMV 257

Query: 219 ------DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
                 D +TLV  L +C  +G L LGK + G  V+   D    + +ALI MY +C  + 
Sbjct: 258 RGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDME 317

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            AR +F  +    VVTWN M++++A +  + EA  +F  M   GV P+ +T++  L+ CA
Sbjct: 318 CARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCA 377

Query: 333 SIGALDLGKWVDKYASQRGLRH---------DIFC--GSIDDALKVFEDMPVTNEVSWNA 381
            +  L  G+ +  +  + G +          D++   G +  A  VF+ M   + +S+ +
Sbjct: 378 RVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTS 437

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI+     G+   AL LFE+M   G   +P+ +  + VLSAC H+GLV EG  LF+ M  
Sbjct: 438 MIAGYGMQGKGTVALRLFEQMIDSG--IKPDHIIMVTVLSACSHSGLVLEGEELFNKMVI 495

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
           S+G+ P+ EHYSCM+DLYARAG L +A + ++  P      +  AL+GAC  + N ++ +
Sbjct: 496 SYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGE 555

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           R  + LLE+ + N+G+YV+ + ++A    WD+ A +R LMR+ GV+K PG +W
Sbjct: 556 RAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAW 608



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 18/273 (6%)

Query: 38  KTVQQIHTQMLINFIQK-PNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIR--GLT 94
           K +  +  +M  + ++   N L+      KD   A +LF  +  P    +N M+    L+
Sbjct: 285 KEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALS 344

Query: 95  TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
              ++ S    ++ +M   G+KP+  T       CA +  L HG  +H  + K G     
Sbjct: 345 DCAEEAS---SIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYR 401

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
            + +SLI MY++ G+L  A+ VFD + + D++S+ SMI+GY   G    A+ LF +M + 
Sbjct: 402 LLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDS 461

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG------SALIDMYGKC 268
              PD I +V+VL +C   G LVL    EG  + NKM +++ +       S +ID+Y + 
Sbjct: 462 GIKPDHIIMVTVLSACSHSG-LVL----EGEELFNKMVISYGIKPQMEHYSCMIDLYARA 516

Query: 269 GALVPARRVFDAMVNKDVVT-WNAMITAYAQNG 300
           G L  A  + D        T W A++ A    G
Sbjct: 517 GLLEKAEEMLDHTPFPPTSTMWAALVGACHDRG 549


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/499 (36%), Positives = 274/499 (54%), Gaps = 16/499 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAW--QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           +F  +   N Y ++ M+ G  T    ++      L+ + K  G   D + +  V  S A 
Sbjct: 175 VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAA 233

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
            + +  G  +H    K GL     +S++L+TMY++C  L+ A K+FD   +R+ ++W++M
Sbjct: 234 TIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAM 293

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           ++GYS+ G + EAV+LF RM      P E T+V VL +C D+  L  GK +  F++K   
Sbjct: 294 VTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF 353

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           + + +  +AL+DMY K G L  AR+ FD +  +DV  W ++I+ Y QN  + EA++L+ R
Sbjct: 354 ERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRR 413

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGS 360
           MK AG+ P+  T+  VL AC+S+  L+LGK V  +  + G   ++            CGS
Sbjct: 414 MKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGS 473

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           ++D   VF   P  + VSWNAMIS L+ NG+  EAL LFE M  EG    P+DVTF+ ++
Sbjct: 474 LEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEG--MEPDDVTFVNII 531

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC H G V+ G   F++MS   GL PK +HY+CMVDL +RAG L EA +F+E       
Sbjct: 532 SACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHG 591

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             +   LL AC+     ++     + L+ + S  S  YV  S I+  L    D  ++   
Sbjct: 592 LCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKH 651

Query: 541 MREKGVSKTPGCSWIGIDD 559
           MR  GVSK  GCSWI + +
Sbjct: 652 MRANGVSKEVGCSWIELKN 670



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 207/427 (48%), Gaps = 24/427 (5%)

Query: 16  ELNDPSLLREKLLSLLKKCPSTKTVQQIHT----QMLINFIQKPNFLLIRIIDLKDFNYA 71
           E +D   +   +LS L         +QIH       L+ F+   N L+      +  N A
Sbjct: 216 EGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEA 275

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
             +F      N   ++ M+ G +   +    ++KL+ +M   G+KP  +T   V  +C++
Sbjct: 276 CKMFDSSGDRNSITWSAMVTGYSQNGESL-EAVKLFSRMFSAGIKPSEYTIVGVLNACSD 334

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           +  L  G  +HS + K+G +     + +L+ MYA+ G L  ARK FD ++ERD+  W S+
Sbjct: 335 ICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSL 394

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           ISGY +    +EA+ L+ RM+    +P++ T+ SVL +C  L  L LGK V G  +K+  
Sbjct: 395 ISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGF 454

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
            L   +GSAL  MY KCG+L     VF    NKDVV+WNAMI+  + NG  +EA+ LF  
Sbjct: 455 GLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEE 514

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKW---------------VDKYASQRGLRHDI 356
           M   G+ PD +T + ++SAC+  G ++ G W               VD YA    L    
Sbjct: 515 MLAEGMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLDPKVDHYACMVDLLSR- 572

Query: 357 FCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             G + +A +  E   + + +  W  ++SA   +G+    +   E++   G       V 
Sbjct: 573 -AGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQ 631

Query: 416 FIGVLSA 422
             G+ +A
Sbjct: 632 LSGIYTA 638



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 240/485 (49%), Gaps = 26/485 (5%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML----INFIQKPNFLLIRIIDLKDFNY 70
           TELN  +    K L+   +  +    + +H Q++       IQ  N L+           
Sbjct: 8   TELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAK 67

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH--SLKLYYQMKRLGLKPDNFTYPFVFIS 128
           A  +F+ I   +  ++N +I G +      S    ++L+ +M+   + P+ +T   +F +
Sbjct: 68  AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            ++L +   G   H+ V K+    D +V  SL+ MY + G ++   KVF  + ER+  +W
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTW 187

Query: 189 NSMISGYSKMGYAKEAVELFGR-MREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFV 246
           ++M+SGY+  G  +EA+++F   +RE+E   D +    +VL S      + LG+ +    
Sbjct: 188 STMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCIT 247

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +KN +     + +AL+ MY KC +L  A ++FD+  +++ +TW+AM+T Y+QNG S EA+
Sbjct: 248 IKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAV 307

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF+RM  AG+ P + T++GVL+AC+ I  L+ GK +  +  + G    +F         
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 367

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
              G + DA K F+ +   +   W ++IS    N    EAL+L+ RM   G    PND T
Sbjct: 368 AKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAG--IIPNDPT 425

Query: 416 FIGVLSACVHAGLVDEGRRLF-DLMSSSFGL-IPKSEHYSCMVDLYARAGHLSEAWDFVE 473
              VL AC     ++ G+++    +   FGL +P     S M   Y++ G L +      
Sbjct: 426 MASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTM---YSKCGSLEDGNLVFR 482

Query: 474 RMPEK 478
           R P K
Sbjct: 483 RTPNK 487



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 196/385 (50%), Gaps = 24/385 (6%)

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           NL+A   G +VH  + + G       ++ L+  YA+CGKL  A  +F+ I  +D+VSWNS
Sbjct: 29  NLVA---GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNS 85

Query: 191 MISGYSKMG---YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +I+GYS+ G    +   ++LF  MR ++ LP+  TL  +  +   L    +G+     VV
Sbjct: 86  LITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVV 145

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K     + Y+ ++L+ MY K G +    +VF  M  ++  TW+ M++ YA  G   EAI 
Sbjct: 146 KMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIK 205

Query: 308 LFN---RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           +FN   R K  G + D +    VLS+ A+   + LG+ +     + GL   +        
Sbjct: 206 VFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVT 264

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               C S+++A K+F+     N ++W+AM++  + NG + EA+ LF RM   G   +P++
Sbjct: 265 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG--IKPSE 322

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T +GVL+AC     ++EG++L   +    G        + +VD+YA+AG L++A    +
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFL-LKLGFERHLFATTALVDMYAKAGCLADARKGFD 381

Query: 474 RMPEKVDEIVLGALLGACQKQKNTD 498
            + E+   +    + G  Q   N +
Sbjct: 382 CLQERDVALWTSLISGYVQNSDNEE 406



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 15/270 (5%)

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
           + E  P   TL+  L       +LV G+ V G +++          + L++ Y KCG L 
Sbjct: 7   QTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLA 66

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNG---LSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            A  +F+A++ KDVV+WN++IT Y+QNG    S   + LF  M+   + P+  TL G+  
Sbjct: 67  KAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFK 126

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           A +S+ +  +G+       +     DI+            G ++D LKVF  MP  N  +
Sbjct: 127 AESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYT 186

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W+ M+S  A  GR  EA+ +F    +E      +D  F  VLS+      V  GR++   
Sbjct: 187 WSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI-HC 245

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           ++   GL+      + +V +Y++   L+EA
Sbjct: 246 ITIKNGLLGFVALSNALVTMYSKCESLNEA 275


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 285/526 (54%), Gaps = 47/526 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR--LGLKPDNFTYPFVFISCAN 131
           LF  + + +  ++N ++ G + A   ++ +   Y  + R   G++P   T   V +  + 
Sbjct: 99  LFTSLPQRDAVSYNALLAGFSRA-GAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASA 157

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE------------ 179
           L     G  VH  + ++G          L+ MYA+ G +  AR+VFDE            
Sbjct: 158 LGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 180 -------------------IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
                              I ERD ++W +M++G ++ G   EA+++F RMR E    D+
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQ 277

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T  S+L +CG L  L  GK +  ++ +   + N ++GSAL+DMY KC ++  A  VF  
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRR 337

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M+ K++++W AMI  Y QNG   EA+ +F+ M+  G+ PD  TL  V+S+CA++ +L+ G
Sbjct: 338 MMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEG 397

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
                 A   GLR  +            CGSI+DA ++F++M   ++VSW A++   A  
Sbjct: 398 AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQF 457

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G+A E + LFE+M  +G   +P+ VTFIGVLSAC  +GLVD+GR  F  M     ++P  
Sbjct: 458 GKAKETIDLFEKMLSKG--VKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLD 515

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           +HY+CM+DLY+R+G L +A +F+++MP   D      LL AC+ + + ++ +   + LL+
Sbjct: 516 DHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLK 575

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++  N  +YV+   + A+   W+D AK+R  MR++ V K PGCSWI
Sbjct: 576 LDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWI 621



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 174/351 (49%), Gaps = 20/351 (5%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N ++  ++  K    A  LF  I   +   +  M+ GLT    + S +L ++ +M+  G+
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLE-SEALDVFRRMRAEGV 273

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
             D +T+  +  +C  L AL  G  +H+ + +   +++  V  +L+ MY++C  +  A  
Sbjct: 274 GIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEA 333

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF  +  ++++SW +MI GY + G  +EAV +F  M+ +   PD+ TL SV+ SC +L  
Sbjct: 334 VFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLAS 393

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G       + + +     + +AL+ +YGKCG++  A R+FD M   D V+W A++  
Sbjct: 394 LEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMG 453

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           YAQ G + E I LF +M   GV PD +T IGVLSAC+  G +D G+    Y       HD
Sbjct: 454 YAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR---SYFHSMQQDHD 510

Query: 356 IF---------------CGSIDDALKVFEDMP-VTNEVSWNAMISALAFNG 390
           I                 G +  A +  + MP   +   W  ++SA    G
Sbjct: 511 IVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 176/393 (44%), Gaps = 78/393 (19%)

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           ++L+T YA  G L  AR+VFD +  R+LV+ NS++S  ++ G  ++   LF  + + + +
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 218 ---------------------------------PDEITLVSVLGSCGDLGDLVLGKWVEG 244
                                            P  IT+  V+     LGD  LG+ V  
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHC 169

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV----------------- 287
            +++       + GS L+DMY K G +  ARRVFD M  K+VV                 
Sbjct: 170 QILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAE 229

Query: 288 --------------TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
                         TW  M+T   QNGL +EA+ +F RM+  GV  D+ T   +L+AC +
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           + AL+ GK +  Y ++     ++F           C S+  A  VF  M   N +SW AM
Sbjct: 290 LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAM 349

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I     NG   EA+ +F  M ++G   +P+D T   V+S+C +   ++EG + F  ++  
Sbjct: 350 IVGYGQNGCGEEAVRVFSEMQRDG--IKPDDFTLGSVISSCANLASLEEGAQ-FHCLALV 406

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            GL P     + +V LY + G + +A    + M
Sbjct: 407 SGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 149/326 (45%), Gaps = 51/326 (15%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L  C +   ++   QIH  +     +   F+   ++D+    +    A  +F ++   
Sbjct: 282 SILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWK 341

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI G          +++++ +M+R G+KPD+FT   V  SCANL +L  G   
Sbjct: 342 NIISWTAMIVGYGQNGCG-EEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQF 400

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H      GL     VS++L+T+Y +CG ++ A ++FDE+   D VSW +++ GY++ G A
Sbjct: 401 HCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKA 460

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KE ++LF +M  +   PD +T + VL +C                            S L
Sbjct: 461 KETIDLFEKMLSKGVKPDGVTFIGVLSACSR--------------------------SGL 494

Query: 262 IDMYGKCGALVPARRVFDAM-VNKDVVT----WNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +D           R  F +M  + D+V     +  MI  Y+++G   +A     +M    
Sbjct: 495 VD---------KGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRC- 544

Query: 317 VNPDKITLIGVLSACASIGALDLGKW 342
             PD      +LSAC   G +++GKW
Sbjct: 545 --PDAFGWATLLSACRLRGDMEIGKW 568



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 77/255 (30%)

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY- 314
           Y+ + L+  Y   G L  ARRVFDAM  +++VT N++++A A+ GL  +   LF  +   
Sbjct: 47  YLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQR 106

Query: 315 --------------------------------AGVNPDKITLIGVLSACASIGALDLGKW 342
                                           AGV P +IT+ GV+   +++G   LG+ 
Sbjct: 107 DAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQ 166

Query: 343 VDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTN---------------- 375
           V     + G     F GS           I DA +VF++M   N                
Sbjct: 167 VHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKM 226

Query: 376 ---------------EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
                           ++W  M++ L  NG   EAL +F RM  EG     +  TF  +L
Sbjct: 227 VAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI--DQYTFGSIL 284

Query: 421 SACVHAGLVDEGRRL 435
           +AC     ++EG+++
Sbjct: 285 TACGALAALEEGKQI 299


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 310/585 (52%), Gaps = 46/585 (7%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQ 77
            D S +   L+ +  +C +     ++  ++    I   N +L+  +     ++A  LF  
Sbjct: 170 QDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDS 229

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +   +  ++N+M+  L+ +  +   +L +   M+  G++ D+ TY     +CA L +L  
Sbjct: 230 MPERDVVSWNMMVSALSQS-GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW 288

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+ V +     D +V+ +L+ +YA+CG    A+ VF+ + +R+ V+W  +I+G+ +
Sbjct: 289 GKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQ 348

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G   E+VELF +MR E    D+  L +++  C    DL LG+ +    +K+       +
Sbjct: 349 HGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 258 GSALIDMYGKC-------------------------------GALVPARRVFDAMVNKDV 286
            ++LI MY KC                               G +  AR  FD M  K+V
Sbjct: 409 SNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV 468

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           +TWNAM+ AY Q+G   + + ++N M     V PD +T + +   CA +GA  LG  +  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIG 528

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
              + GL  D             CG I +A KVF+ + V + VSWNAMI+  + +G   +
Sbjct: 529 RTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 588

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A+ +F+ + K G  A+P+ ++++ VLS C H+GLV EG+  FD+M     + P  EH+SC
Sbjct: 589 AIEIFDDILKRG--AKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSC 646

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514
           MVDL  RAGHL+EA D ++ MP K    V GALL AC+   N ++++   + + E++S +
Sbjct: 647 MVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 706

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           SG+Y++ +KI+A+    DDSA++R LMR+KG+ K PG SW+ +++
Sbjct: 707 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNN 751



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 212/450 (47%), Gaps = 55/450 (12%)

Query: 46  QMLINFIQKPNFLLIRI-----IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
           ++L+  I  PN +   +     + L   + A  LF ++   +  ++N ++ G   + Q+Y
Sbjct: 60  RLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQS-QQY 118

Query: 101 SHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
             SL+ +  M R G   P+ FT+ +   SC  L   +  + +   V K G  +D  V+ +
Sbjct: 119 LASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAA 178

Query: 160 LITMYARCGKLDSARK-------------------------------VFDEIRERDLVSW 188
           L+ M+ RCG +D A +                               +FD + ERD+VSW
Sbjct: 179 LVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSW 238

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N M+S  S+ G  +EA+++   M+ +    D  T  S L +C  L  L  GK +   V++
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N   ++ Y+ SAL+++Y KCG    A+ VF+++ +++ V W  +I  + Q+G   E++ L
Sbjct: 299 NLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVEL 358

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           FN+M+   +  D+  L  ++S C S   L LG+ +     + G    +            
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C ++  A  +F  M   + VSW +MI+A +  G   +A   F+ MS +      N +T+ 
Sbjct: 419 CDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTK------NVITWN 472

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +L A +  G  ++G R++++M S   + P
Sbjct: 473 AMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 179/426 (42%), Gaps = 78/426 (18%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK-VFDEIRERDLV 186
           SC    AL    ++H  +  +GL     + ++L+  Y  CG L  AR+ +  +I   +++
Sbjct: 13  SCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVI 72

Query: 187 SWNSMISGYSKMGYAKEAVELFGRM----------------REEEFL------------- 217
           + N M++GY K+G   +AVELFGRM                + +++L             
Sbjct: 73  THNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSG 132

Query: 218 ---PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
              P+  T    + SCG LG+  L   + G V K     +  + +AL+DM+ +CG +  A
Sbjct: 133 DSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLA 192

Query: 275 RR-------------------------------VFDAMVNKDVVTWNAMITAYAQNGLSN 303
            R                               +FD+M  +DVV+WN M++A +Q+G   
Sbjct: 193 SRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVR 252

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----------WVDKYASQRGL 352
           EA+ +   M+  GV  D  T    L+ACA + +L  GK            +D Y +   +
Sbjct: 253 EALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALV 312

Query: 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG   +A  VF  +   N V+W  +I+    +G   E++ LF +M  E      +
Sbjct: 313 ELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE--LMTLD 370

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
                 ++S C     +  GR+L  L   S G I      + ++ +YA+  +L  A    
Sbjct: 371 QFALATLISGCCSRMDLCLGRQLHSLCLKS-GQIQAVVVSNSLISMYAKCDNLQSAESIF 429

Query: 473 ERMPEK 478
             M EK
Sbjct: 430 RFMNEK 435


>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
          Length = 598

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 302/553 (54%), Gaps = 28/553 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL-----KDFNYASLLFHQISR 80
           SL+K C     +++   IH  +L   +     +L  ++ L     K    A  LF +I  
Sbjct: 45  SLIKACNRLSAIREGRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFDKIPE 104

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG----LKPDNFTYPFVFISCANLLALN 136
                 N MI G     +++   + L+ ++   G    +KP+  T   +   C      +
Sbjct: 105 KTIVTVNCMISGFVKN-KRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRFS 163

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G S+HS   K  LD  + V ++LI +YA    +D+A K+F E   RDLVSWN+MI+GY+
Sbjct: 164 IGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYA 223

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           K    + A  LF  MR      D ++LVS++ +C +  DL +GK V  F+  + M++  +
Sbjct: 224 KNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGMEMMIH 283

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             +ALI+MY KCG++   R+VFD + ++++ +WN+MI  Y + G + EA+ L+N ++   
Sbjct: 284 FETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQSRK 343

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH----------DIF--CGSIDDA 364
           + PD++T++G++SAC S G L  G  ++ Y                  D++  CGS+D A
Sbjct: 344 IKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKCGSMDRA 403

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF  MP  + +SW ++I   A NG   EALL F +M  E     PN VTF+GVLSAC 
Sbjct: 404 ETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAE--KIEPNSVTFLGVLSACD 461

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLVD+G+ L+D+M   + + PK EH  CMVD++ARAG L EA+ FV+ MP + + +V 
Sbjct: 462 HAGLVDKGKNLYDIMCKYYHIEPKIEHCGCMVDMHARAGMLEEAYKFVKDMPVEPNAVVW 521

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSG-NYVISSKIFANLKMWDDSAKMRALMRE 543
             L+ AC+   + ++   ++  L+++++ +   ++VISS IFA    WDD  + R+LM  
Sbjct: 522 RMLINACRVHGDFNLGLNLVSGLIDVKTEHGPEDHVISSNIFAEAGRWDDVLQERSLMVA 581

Query: 544 KGVSKTPGCSWIG 556
           +   K PG S I 
Sbjct: 582 QKAVKLPGKSSIA 594



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 192/377 (50%), Gaps = 18/377 (4%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKV 176
           D+F Y  +  +C  L A+  G S+H  V + GLD + +V ++L+ +Y+   K +  A  +
Sbjct: 39  DHFVYASLIKACNRLSAIREGRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACAL 98

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF----LPDEITLVSVLGSCGD 232
           FD+I E+ +V+ N MISG+ K       V LF R+    F     P+ +TLV ++  C +
Sbjct: 99  FDKIPEKTIVTVNCMISGFVKNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVE 158

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
            G   +G  +  +  K  +DL   + +ALI +Y +   +  A ++F     +D+V+WN M
Sbjct: 159 FGRFSIGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNTM 218

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YA+N     A  LF  M+   V  D+++L+ ++SAC +   L +GK V  +    G+
Sbjct: 219 IAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGM 278

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
              I            CGSI+   KVF+++   N  SWN+MI      G   EAL L+  
Sbjct: 279 EMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNV 338

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           +       +P++VT +G++SAC  +G + +G ++   + SS  L   +   + ++D+YA+
Sbjct: 339 IQSR--KIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAK 396

Query: 462 AGHLSEAWDFVERMPEK 478
            G +  A     +MP +
Sbjct: 397 CGSMDRAETVFSKMPRR 413



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 182/422 (43%), Gaps = 73/422 (17%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRM----REEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           W +MI  ++       A+  F  +    RE   L D     S++ +C  L  +  G+ + 
Sbjct: 4   WLTMIRRHASDANPFHAISFFKAIPRNQRENAPLDDHFVYASLIKACNRLSAIREGRSIH 63

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             V++  +D N  + +AL+ +Y     ++  A  +FD +  K +VT N MI+ + +N   
Sbjct: 64  CHVLRFGLDYNVNVLNALVYLYSSAEKSMGCACALFDKIPEKTIVTVNCMISGFVKNKRF 123

Query: 303 NEAIMLFNRMKYAG----VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG--LRHDI 356
           +  + LFNR+   G    V P+ +TL+ ++S C   G   +G  +  Y  +    L++++
Sbjct: 124 HAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEV 183

Query: 357 FCGSI---------DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
               I         D A K+F +  V + VSWN MI+  A N     A  LF  M    G
Sbjct: 184 RNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRI--G 241

Query: 408 AARPNDVTFIGVLSAC-----------VHA------------------------GLVDEG 432
               + V+ + ++SAC           VHA                        G ++ G
Sbjct: 242 NVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELG 301

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA---WDFVERMPEKVDEIVLGALLG 489
           R++FD ++           ++ M+  Y   G   EA   W+ ++    K DE+ +  L+ 
Sbjct: 302 RKVFDELADE-----NIASWNSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLIS 356

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV-SK 548
           AC  + + D+ Q + Q+   IESS   +++  S +  N  + D  AK  ++ R + V SK
Sbjct: 357 AC--RSSGDLHQGI-QINSYIESS---DHLSGSTVLCN-ALIDMYAKCGSMDRAETVFSK 409

Query: 549 TP 550
            P
Sbjct: 410 MP 411


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 173/454 (38%), Positives = 258/454 (56%), Gaps = 14/454 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           DN++    F + + L +++ G  +HS   K+GL  D  V +SLI MY+ C    +AR+V 
Sbjct: 92  DNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVL 151

Query: 178 DEIRER--DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           D   +   D VSWN++ISGY + G   +A++ FG+M +E+   D++TL++ L +    G 
Sbjct: 152 DSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGK 211

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G+     VV N   +N YMGS+LI MY KCG +  AR+VF  M  ++VV W +MI+ 
Sbjct: 212 VKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISG 271

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y Q G   EA+ LF  M+  G+  D  T+  V+S+CA +GALDLG++V  Y    GL  +
Sbjct: 272 YTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKE 331

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG I+ A ++F  +   +  SW AMI     NG   EAL LF +M  
Sbjct: 332 LSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEG 391

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           E G   PN+VTF+GVL++C H GLV++G   F  MS  + L P+ EHY CMVDL  RA  
Sbjct: 392 E-GKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKL 450

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L+EA  F++ MP   D +V  +LL AC+      +++ V + +LE+E      +V+ S +
Sbjct: 451 LTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNV 510

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +A    W D  ++R  M    +SK PGCS+I +D
Sbjct: 511 YATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVD 544



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 210/417 (50%), Gaps = 31/417 (7%)

Query: 10  RHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN 69
           RH  +  L++ SL      S   + PS     Q+H+  +   +    F+L  +I++    
Sbjct: 84  RHSGYVTLDNYSL--NIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINM---- 137

Query: 70  YASLLFHQISRP----------NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
           Y+S  +   +R           +  ++N +I G        + +L+ + QM +  +  D+
Sbjct: 138 YSSCSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMP-NKALQAFGQMVKEQVTLDD 196

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
            T     ++ A    +  G   HS V   G   + ++  SLI+MYA+CG ++ ARKVF  
Sbjct: 197 VTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHG 256

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + ER++V W SMISGY+++G  KEAV LF  M+      D+ T+ +V+ SC  +G L LG
Sbjct: 257 MHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLG 316

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           ++V  +   + +     + ++LIDMY KCG +  A  +F  +  +DV +W AMI  +  N
Sbjct: 317 RYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVN 376

Query: 300 GLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLG-------KWVDKYASQ-- 349
           GL +EA+ LF +M+  G V P+++T +GVL++C+  G ++ G         V K A +  
Sbjct: 377 GLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIE 436

Query: 350 -RGLRHDIFCGS--IDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERM 402
             G   D+   +  + +A +  ++MP+  + V W +++ A    G    A  + ER+
Sbjct: 437 HYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERI 493


>gi|15223380|ref|NP_174012.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216976|sp|Q9ZVG8.1|PPR60_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g26900, mitochondrial; Flags: Precursor
 gi|4262179|gb|AAD14496.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332192635|gb|AEE30756.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 281/511 (54%), Gaps = 16/511 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK---DFNYASLLFHQISRP 81
           +KL++ L+ C  T  V +IH  M+   + K +F + +++      D  YAS +F  +S  
Sbjct: 29  QKLINDLRSCRDTVEVSRIHGYMVKTGLDKDDFAVSKLLAFSSVLDIRYASSIFEHVSNT 88

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N + FN MIRG + +  +   +  ++ Q++  GL  D F++     SC+  L ++ G  +
Sbjct: 89  NLFMFNTMIRGYSIS-DEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGL 147

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSKMGY 200
           H    + G      + ++LI  Y  CGK+  ARKVFDE+ +  D V+++++++GY ++  
Sbjct: 148 HGIALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSK 207

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
              A++LF  MR+ E + +  TL+S L +  DLGDL   +      +K  +DL+ ++ +A
Sbjct: 208 KALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITA 267

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LI MYGK G +  ARR+FD  + KDVVTWN MI  YA+ GL  E + L  +MKY  + P+
Sbjct: 268 LIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPN 327

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFE 369
             T +G+LS+CA   A  +G+ V     +  +  D   G+           ++ A+++F 
Sbjct: 328 SSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFN 387

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M   +  SW AMIS    +G A EA+ LF +M +E    RPN++TF+ VL+AC H GLV
Sbjct: 388 RMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLV 447

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            EG R F  M  ++   PK EHY C+VDL  RAG L EA++ +  +P   D     ALL 
Sbjct: 448 MEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLA 507

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           AC+   N D+ + VM  L E+  ++  + ++
Sbjct: 508 ACRVYGNADLGESVMMRLAEMGETHPADAIL 538



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 191/356 (53%), Gaps = 21/356 (5%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           F+ ++ G     +K + +L L+  M++  +  +  T      + ++L  L+   S H   
Sbjct: 195 FSTLMNGYLQVSKK-ALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLC 253

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            KIGLD D H+  +LI MY + G + SAR++FD    +D+V+WN MI  Y+K G  +E V
Sbjct: 254 IKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECV 313

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            L  +M+ E+  P+  T V +L SC       +G+ V   + + ++ L+  +G+AL+DMY
Sbjct: 314 WLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMY 373

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG--VNPDKIT 323
            K G L  A  +F+ M +KDV +W AMI+ Y  +GL+ EA+ LFN+M+     V P++IT
Sbjct: 374 AKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEIT 433

Query: 324 LIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDM 371
            + VL+AC+  G +  G     + V+ Y+    + H     D+    G +++A ++  ++
Sbjct: 434 FLVVLNACSHGGLVMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNL 493

Query: 372 PVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           P+T++  +W A+++A    G A     +  R++ E G   P D     +L A  HA
Sbjct: 494 PITSDSTAWRALLAACRVYGNADLGESVMMRLA-EMGETHPAD----AILLAGTHA 544


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 183/510 (35%), Positives = 284/510 (55%), Gaps = 44/510 (8%)

Query: 61  RIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
           ++ DL D   A  +F +I +P+  ++N +I G     + +  +L+L  QMKR        
Sbjct: 305 KVGDLAD---AISVFEKIKQPDIVSWNAVIAGCVLH-EHHEQALELLGQMKR-------- 352

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
                               +HSS+ K+ ++ D  VS  L+ MY++C  L+ AR  F+ +
Sbjct: 353 -------------------QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 393

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            E+DL++WN++ISGYS+     EA+ LF  M +E    ++ TL ++L S   L  + + +
Sbjct: 394 PEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCR 453

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V G  VK+    + Y+ ++LID YGKC  +  A R+F+     D+V++ +MITAYAQ G
Sbjct: 454 QVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYG 513

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
              EA+ LF  M+   + PD+     +L+ACA++ A + GK +  +  + G   DIF   
Sbjct: 514 QGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN 573

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CGSIDDA + F ++     VSW+AMI  LA +G   +AL LF +M KEG   
Sbjct: 574 SLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG--V 631

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            PN +T + VL AC HAGLV E +  F+ M   FG  P  EHY+CM+DL  RAG ++EA 
Sbjct: 632 SPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAV 691

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
           + V +MP + +  V GALLGA +  K+ ++ +R  ++L  +E   SG +V+ + I+A+  
Sbjct: 692 ELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAG 751

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            W++ A++R LMR+  V K PG SWI + D
Sbjct: 752 KWENVAEVRRLMRDSKVKKEPGMSWIEVKD 781



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 217/428 (50%), Gaps = 33/428 (7%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H+ ++   ++   F+ + ++D+         A + F+ +   +  A+N +I G +  
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
           W+    +L L+ +M + G+  +  T   +  S A L  ++    VH    K G   D +V
Sbjct: 412 WEDME-ALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 470

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
            +SLI  Y +C  ++ A ++F+E    DLVS+ SMI+ Y++ G  +EA++LF  M++ E 
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 530

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            PD     S+L +C +L     GK +   ++K    L+ + G++L++MY KCG++  A R
Sbjct: 531 KPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 590

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
            F  +  + +V+W+AMI   AQ+G   +A+ LFN+M   GV+P+ ITL+ VL AC   G 
Sbjct: 591 AFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGL 650

Query: 337 LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           +   K              ++  S+++   +F   P+     +  MI  L   G+ +EA+
Sbjct: 651 VTEAK--------------LYFESMEE---LFGFKPMQEH--YACMIDLLGRAGKINEAV 691

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCM 455
            L  +M  E  A+      +  +L A      V+ GRR  +++   F L P KS  +  +
Sbjct: 692 ELVNKMPFEANAS-----VWGALLGAARIHKDVELGRRAAEML---FILEPEKSGTHVLL 743

Query: 456 VDLYARAG 463
            ++YA AG
Sbjct: 744 ANIYASAG 751



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 159/300 (53%), Gaps = 11/300 (3%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P + +Y  +   C    +L  G+ +H+ + K GL +D  + + LI +Y++C     ARK+
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
            DE  E DLVSW+++ISGY++ G    A+  F  M       +E T  SVL +C  + DL
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
            +GK V G VV +  + + ++ + L+ MY KC   + ++R+FD +  ++VV+WNA+ + Y
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            Q     EA+ LF  M  +G+ P++ +L  +++AC  +     GK +  Y  + G   D 
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           F            G + DA+ VFE +   + VSWNA+I+    +    +AL L  +M ++
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 149/561 (26%), Positives = 259/561 (46%), Gaps = 66/561 (11%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LL +C +TK+++   QIH  +  + +     +   +I+L    + F YA  L  + S P+
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPD 121

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             +++ +I G          +L  +++M  LG+K + FT+  V  +C+ +  L  G  VH
Sbjct: 122 LVSWSALISGYAQNGLG-GGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V   G + D  V+++L+ MYA+C +   ++++FDEI ER++VSWN++ S Y +  +  
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCG 240

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EAV LF  M      P+E +L S++ +C  L D   GK + G+++K   D + +  +AL+
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALV 300

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY K G L  A  VF+ +   D+V+WNA+I     +    +A+ L  +MK   ++   +
Sbjct: 301 DMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ-LHSSLM 359

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAM 382
            +        S+G +D+      Y+          C  ++DA   F  +P  + ++WNA+
Sbjct: 360 KMDMESDLFVSVGLVDM------YSK---------CDLLEDARMAFNLLPEKDLIAWNAI 404

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI-------GVLSAC--VHAGLVDEGR 433
           IS  +      EAL LF  M KEG       ++ I        V+  C  VH   V  G 
Sbjct: 405 ISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGF 464

Query: 434 R----LFDLMSSSFGLIPKSE---------------HYSCMVDLYARAGHLSEAWDF--- 471
                + + +  S+G     E                ++ M+  YA+ G   EA      
Sbjct: 465 HSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLE 524

Query: 472 VERMPEKVDEIVLGALLGAC------QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
           ++ M  K D  V  +LL AC      ++ K   V       +L+I + NS        ++
Sbjct: 525 MQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS-----LVNMY 579

Query: 526 ANLKMWDDSAKMRALMREKGV 546
           A     DD+ +  + + E+G+
Sbjct: 580 AKCGSIDDAGRAFSELTERGI 600



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 140/290 (48%), Gaps = 21/290 (7%)

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           F P  ++   +L  C     L  G  +   + K+ +  +  + + LI++Y KC     AR
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYAR 111

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           ++ D     D+V+W+A+I+ YAQNGL   A+M F+ M   GV  ++ T   VL AC+ + 
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
            L +GK V       G   D+F           C    D+ ++F+++P  N VSWNA+ S
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR-RLFD--LMSS 441
                    EA+ LF  M   G   +PN+ +   +++AC   GL D  R ++    L+  
Sbjct: 232 CYVQXDFCGEAVGLFYEMVLSG--IKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKL 287

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +   P S   + +VD+YA+ G L++A    E++ +  D +   A++  C
Sbjct: 288 GYDWDPFSA--NALVDMYAKVGDLADAISVFEKIKQP-DIVSWNAVIAGC 334


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 300/566 (53%), Gaps = 25/566 (4%)

Query: 12  LAFTELNDPSLLREKLLSLL-KKCPSTKTVQ-QIHTQMLINFIQKPNFLLIRIIDLKDFN 69
           L F  L  PS       +LL  KC S    Q   H     N     N L+         +
Sbjct: 34  LYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSY-NTLINAYAKHSLIH 92

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            A  +F +I +P+  ++N +I       +    +L+L+ +++ L L  D FT   V  +C
Sbjct: 93  IARRVFDEIPQPDIVSYNTLIAAYADRGE-CGPTLRLFEEVRELRLGLDGFTLSGVITAC 151

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLV 186
            + + L     +H  V   G D    V+++++  Y+R G L  AR+VF E+ E   RD V
Sbjct: 152 GDDVGLVR--QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEV 209

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MI    +     EAV LF  M       D  T+ SVL +   + DLV G+   G +
Sbjct: 210 SWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMM 269

Query: 247 VKNKMDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYA-QNGLSNE 304
           +K+    N ++GS LID+Y KC G++V  R+VF+ +   D+V WN MI+ ++    LS +
Sbjct: 270 IKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSED 329

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
            +  F  M+  G  PD  + + V SAC+++ +  LGK V   A +  + ++         
Sbjct: 330 GLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALV 389

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG++ DA +VF+ MP  N VS N+MI+  A +G   E+L LFE M ++  A  PN
Sbjct: 390 AMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIA--PN 447

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            +TFI VLSACVH G V+EG++ F++M   F + P++EHYSCM+DL  RAG L EA   +
Sbjct: 448 SITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERII 507

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           E MP     I    LLGAC+K  N +++ +     L +E  N+  YV+ S ++A+   W+
Sbjct: 508 ETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWE 567

Query: 533 DSAKMRALMREKGVSKTPGCSWIGID 558
           ++A ++ LMRE+GV K PGCSWI ID
Sbjct: 568 EAATVKRLMRERGVKKKPGCSWIEID 593



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 215/479 (44%), Gaps = 60/479 (12%)

Query: 121 TYPFVFISCANLLA-------LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS- 172
           TYP    +  NLL        L  G  +H+  FK  +    ++S+    +Y++CG L + 
Sbjct: 4   TYPLQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNA 63

Query: 173 ------------------------------ARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
                                         AR+VFDEI + D+VS+N++I+ Y+  G   
Sbjct: 64  QTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECG 123

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
             + LF  +RE     D  TL  V+ +CGD  D+ L + +  FVV    D    + +A++
Sbjct: 124 PTLRLFEEVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVL 181

Query: 263 DMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
             Y + G L  ARRVF  M     +D V+WNAMI A  Q+    EA+ LF  M   G+  
Sbjct: 182 ACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKV 241

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF---CGSIDDALKV 367
           D  T+  VL+A   +  L  G+       + G            D++    GS+ +  KV
Sbjct: 242 DMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKV 301

Query: 368 FEDMPVTNEVSWNAMISALA-FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           FE++   + V WN MIS  + +   + + L  F  M + G   RP+D +F+ V SAC + 
Sbjct: 302 FEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNG--FRPDDCSFVCVTSACSNL 359

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
                G+++  L   S     +    + +V +Y++ G++ +A    + MPE  + + L +
Sbjct: 360 SSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEH-NTVSLNS 418

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           ++    +      S R+ +L+LE + + NS  ++       +    ++  K   +M+E+
Sbjct: 419 MIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKER 477


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 277/496 (55%), Gaps = 14/496 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A L F QI   +  A+N MI G      +   +++L+YQM+  G KP++ T+  V  +  
Sbjct: 200 AGLAFDQIENKDIVAWNTMITGYAQNCYE-EEAIELFYQMELEGFKPNDTTFCCVLKAST 258

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +     G   H+ V K+G   D  V+ +L+ MY++   ++   + F E+ +R+LVS+N+
Sbjct: 259 AMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNA 318

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+GYS MG  +EA+ ++ +++ E   PD  T V +  SC     +  G  V    VK  
Sbjct: 319 LITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFG 378

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D +  +G+++++ Y KCG    A   F+++   + V W  +I+ +AQNG   +A+M F 
Sbjct: 379 LDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFC 438

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M+      D+ +   V+ A +S  A++ G+ +  +  + GL   I+           CG
Sbjct: 439 KMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCG 498

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            ++DA KVF  MP  N VSWN+MI+  A NG   EALLLF+ M+  G    P  VTF+G+
Sbjct: 499 MVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSG--ILPTAVTFVGI 556

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC HAGLV+EGR  ++LM  ++G+ P  EH +CMVDL  RAG+L EA  F+       
Sbjct: 557 LFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSK 616

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           +  + G+LL AC   KN+DV  R  Q  L +E   S +Y   S I+A+ ++W + +++R 
Sbjct: 617 EPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRD 676

Query: 540 LMREKGVSKTPGCSWI 555
           LM++ GV K PGCSWI
Sbjct: 677 LMKDMGVEKEPGCSWI 692



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 201/389 (51%), Gaps = 18/389 (4%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
            +L  + QM R G++P+  TY     +CA     +   S+H  + K G      VS  LI
Sbjct: 24  QALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLI 83

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE----EFL 217
           +MY++  ++  AR +FD++ ERD VSWNSMI+GYS+ G  +EA  LF  M       + L
Sbjct: 84  SMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLL 143

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
             + TL +VL +CG LG   +GK V G+ VK   D + ++  + + MY KCG L  A   
Sbjct: 144 VSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLA 203

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD + NKD+V WN MIT YAQN    EAI LF +M+  G  P+  T   VL A  ++   
Sbjct: 204 FDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDS 263

Query: 338 DLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISAL 386
            +G+       + G   D+F  +           I+D  + F +M   N VS+NA+I+  
Sbjct: 264 AVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGY 323

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           +  G+  EAL ++ ++  EG    P+  TF+G+ S+C  +  V EG ++  + S  FGL 
Sbjct: 324 SLMGKYEEALRVYSQLQSEG--MEPDSFTFVGLFSSCSVSSTVAEGAQV-HVHSVKFGLD 380

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERM 475
                 + +V+ Y++ G    A +  E +
Sbjct: 381 SDVSVGNSIVNFYSKCGFTDSALEAFESI 409



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 212/423 (50%), Gaps = 19/423 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM----KRLGLKPDNFTYPFVF 126
           A  LF  +   ++ ++N MI G +        +  L+  M    +   L   +FT   V 
Sbjct: 95  ARFLFDDMPERDDVSWNSMIAGYSQRGLN-EEACGLFCSMINSCENWKLLVSDFTLATVL 153

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +C  L     G  VH    KIG D D  VS S + MY +CG LD A   FD+I  +D+V
Sbjct: 154 KACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIV 213

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +WN+MI+GY++  Y +EA+ELF +M  E F P++ T   VL +   + D  +G+     V
Sbjct: 214 AWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKV 273

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K    ++ ++ +AL+DMY K   +    R F  M  +++V++NA+IT Y+  G   EA+
Sbjct: 274 LKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEAL 333

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            ++++++  G+ PD  T +G+ S+C+    +  G  V  ++ + GL  D+          
Sbjct: 334 RVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFY 393

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG  D AL+ FE +   N V W  +IS  A NG   +AL+ F +M K     + ++ +
Sbjct: 394 SKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKF--IDKTDEFS 451

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
              V+ A      V++GR L   +  S GL       S ++D+Y++ G + +A      M
Sbjct: 452 SSSVIKAVSSWAAVEQGRHLHAHVMKS-GLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVM 510

Query: 476 PEK 478
           PEK
Sbjct: 511 PEK 513



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 167/281 (59%), Gaps = 4/281 (1%)

Query: 61  RIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
           +  D++D   A   F ++S+ N  +FN +I G +    KY  +L++Y Q++  G++PD+F
Sbjct: 294 KFYDIEDVERA---FGEMSKRNLVSFNALITGYSLM-GKYEEALRVYSQLQSEGMEPDSF 349

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  +F SC+    +  G  VH    K GLD D  V +S++  Y++CG  DSA + F+ I
Sbjct: 350 TFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESI 409

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
              + V W  +ISG+++ G  ++A+  F +MR+     DE +  SV+ +      +  G+
Sbjct: 410 NRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGR 469

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +   V+K+ +D   Y+GSA+IDMY KCG +  A++VF  M  K+VV+WN+MIT YAQNG
Sbjct: 470 HLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNG 529

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
              EA++LF  M  +G+ P  +T +G+L AC+  G ++ G+
Sbjct: 530 FCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGR 570



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 147/332 (44%), Gaps = 47/332 (14%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           E ++V W S I+  ++ G   +A+  F +M      P+ IT  + + +C       L   
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +   ++K       ++ S LI MY K   +  AR +FD M  +D V+WN+MI  Y+Q GL
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 302 SNEAIMLFNRMKYAGVN----PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           + EA  LF  M  +  N        TL  VL AC  +G   +GK V  YA + G   D+F
Sbjct: 123 NEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLF 182

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CG +D A   F+ +   + V+WN MI+  A N    EA+ LF +M  EG
Sbjct: 183 VSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEG 242

Query: 407 GAARPNDVTFIGVLSA-----------CVHA---------------GLVDEGRRLFDL-- 438
              +PND TF  VL A           C HA                LVD   + +D+  
Sbjct: 243 --FKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIED 300

Query: 439 MSSSFGLIPKSE--HYSCMVDLYARAGHLSEA 468
           +  +FG + K     ++ ++  Y+  G   EA
Sbjct: 301 VERAFGEMSKRNLVSFNALITGYSLMGKYEEA 332



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M+  +VV W + IT  A+ GL ++A+  F +M  AG+ P+ IT    +SACA      L 
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 341 KWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFN 389
             +     ++G  + +F  S           I +A  +F+DMP  ++VSWN+MI+  +  
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 390 GRAHEALLLFERM--SKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
           G   EA  LF  M  S E      +D T   VL AC   G    G+
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGK 166


>gi|326524926|dbj|BAK04399.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 584

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 192/539 (35%), Positives = 283/539 (52%), Gaps = 23/539 (4%)

Query: 38  KTVQQIHTQ-MLINFIQKPNFL--LIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRG-- 92
           + +  IH + +L+     P F   L+         YA  +F    R + Y +N ++R   
Sbjct: 37  RALLPIHARAVLLGVAANPAFATRLLAAAAPCSLAYARRVFDAAPRRDAYMWNTLLRAHA 96

Query: 93  --LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
                A      +L+LY +M+  G+ PD +TYP V  +CA   A   G + H    +  L
Sbjct: 97  HAQAPAGSTAGGALQLYKRMRAAGVAPDCYTYPIVLPACAAARAPRLGRAAHGDAVRFAL 156

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVF---DEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
            ED  V  +LI MY + G +  A +VF     +  R +VSW +M++GY++     +AV +
Sbjct: 157 AEDGFVHSALIAMYCQEGDVADAEQVFLAAAAVGARTVVSWTAMVAGYAQNCLFGQAVTV 216

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           FG M  +  LP+EITL+S L        L  G+ V GFVVK   D N  + +ALI MYGK
Sbjct: 217 FGAMVAQGMLPNEITLISFLPCLQGQECLAAGEMVHGFVVKLGFDANLPLVNALIAMYGK 276

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           CG++  A+ +FD M    VV+WN M+  Y QNG    AI  F+RM    V  D +TL+ V
Sbjct: 277 CGSIAAAKELFDGMAAHTVVSWNTMVAMYEQNGDGVRAIKFFHRMLSEKVGFDAVTLVSV 336

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE 376
           LSAC   GAL+ GKWV + A  RGL  D             CG I  A + F+ +     
Sbjct: 337 LSACTRQGALETGKWVHELARSRGLDTDARIGNVLVDMYAKCGEIAYARQAFDGLREPGV 396

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           VSW+AMISA A +G   EAL LF  M  +G   +PN  T   VL AC H+GLVDEG  +F
Sbjct: 397 VSWSAMISAYANHGEPEEALNLFSAMKDQG--VKPNSFTLTAVLVACGHSGLVDEGLAIF 454

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
           + +   + + P  E+Y+CMVD+  RAG L EA++ +  M  + D+ + GA LG C+   N
Sbjct: 455 NSIVRDYHISPTLENYACMVDMLGRAGRLVEAYEIIRGMSMQPDKCIWGAFLGGCRLHGN 514

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            ++++ V + L +  S++   YV+ + ++    M +D+ + R  M+E  + KT G S +
Sbjct: 515 LELAEFVAKDLFQSGSNDVTFYVLMANMYFEAGMLEDAERTRRAMKEMELKKTAGHSLV 573


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/502 (34%), Positives = 280/502 (55%), Gaps = 25/502 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           NY  L F   S   ++  N      T   Q+   S  L+Y  KR         +    +S
Sbjct: 12  NYGKLRFSSASLSWQFDVNCNSNEPTPCSQESECSHVLHYDTKR---------FRSSLLS 62

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C NL  +     VH+ +   G   +  V++ L+ MY   G L+ A+++FD + +R   SW
Sbjct: 63  CRNLFQVRQ---VHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSW 119

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           + ++ GY+K+G       +F  +       D+ +   V+ +C DL DL  G+ +    +K
Sbjct: 120 SVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLK 179

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +D   ++ + L+DMY +C  +  A ++F  M  +D+ TW  MI A A++G+  E+++ 
Sbjct: 180 CGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVF 239

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F+RM+  G+ PDK+ L+ V+ ACA +GA++  K +  Y +  G   D+            
Sbjct: 240 FDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAK 299

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CGS++ A  +F+ M V N ++W+AMI+A  ++G+  +AL LF  M + G    PN +TF+
Sbjct: 300 CGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSG--ILPNRITFV 357

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +L AC HAGL++EG+R F  M   +G+ P  +HY+CMVDL  RAG L EA + +E MP 
Sbjct: 358 SLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPV 417

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           + DE++ GALLGAC+  ++ D+++RV + LL+++S   G+YV+ S I+AN   W+D AK 
Sbjct: 418 EKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKT 477

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R LM + G+ K PG +WI + +
Sbjct: 478 RDLMTKGGLRKIPGRTWIEVGE 499



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 216/404 (53%), Gaps = 28/404 (6%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINF----IQKPNFLLIRIIDLKDFNYASLL 74
           D    R  LLS    C +   V+Q+H Q+  N     +   N LL   ++      A  L
Sbjct: 52  DTKRFRSSLLS----CRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQEL 107

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F  +S+ + Y+++V++ G       +S    ++ ++ R G   D+++ P V  +C +L  
Sbjct: 108 FDGMSKRHPYSWSVIVGGYAKVGNFFS-CFWMFRELLRSGAPLDDYSAPVVIRACRDLKD 166

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G  +H    K GLD    V  +L+ MYARC  ++ A ++F ++ +RDL +W  MI  
Sbjct: 167 LKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGA 226

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            ++ G   E++  F RMR +  +PD++ LV+V+ +C  LG +   K +  ++      L+
Sbjct: 227 LAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLD 286

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             +G+A+IDMY KCG++  AR +FD M  ++V+TW+AMI AY  +G   +A+ LF  M  
Sbjct: 287 VILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLR 346

Query: 315 AGVNPDKITLIGVLSACASIGALDLGK------WVDKYASQRGLRH-----DIF--CGSI 361
           +G+ P++IT + +L AC+  G ++ G+      W D+Y     ++H     D+    G +
Sbjct: 347 SGILPNRITFVSLLYACSHAGLIEEGQRFFSSMW-DEYGVTPDVKHYTCMVDLLGRAGRL 405

Query: 362 DDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           D+AL++ E MPV  +EV W A++ A     R H  L L ER+++
Sbjct: 406 DEALEMIEGMPVEKDEVLWGALLGAC----RIHRHLDLAERVAR 445


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 275/513 (53%), Gaps = 57/513 (11%)

Query: 62  IIDLKDFN---YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD 118
           I  L  FN   YA L + Q+  PN + +N MI+G   ++Q    +L+LY QM R  + P 
Sbjct: 21  ISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPV-QALELYVQMLRANVSPT 79

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
           ++T+P +  +C  +  L    +VH  V++ G D    V  SL+  Y+  G+++ + +VFD
Sbjct: 80  SYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFD 139

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           E+ ERD+ +W +M+SG  ++G    A  LF      + +PD                  L
Sbjct: 140 EMPERDVFAWTTMVSGLVRVGDMSSAGRLF------DMMPDR----------------NL 177

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
             W                 + LID Y +   +  A  +F+ M  +D+++W  MI  Y+Q
Sbjct: 178 ATW-----------------NTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQ 220

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           N    EA+ +FN M   G++PD++T+  V+SACA +GALDLGK +  Y  Q G   D++ 
Sbjct: 221 NKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYI 280

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CGS+D +L +F  +   N   WN++I  LA +G A EAL +F++M +E  
Sbjct: 281 GSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMERE-- 338

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             +PN VTF+ VLSAC HAGL++EGR+ F  M+    + P  EHY CMVDL ++AG L E
Sbjct: 339 KIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEE 398

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A   +  M  + + ++ GALL  C+  +N +++Q     L+ +E  NSG Y +   + A 
Sbjct: 399 ALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAE 458

Query: 528 LKMWDDSAKMRALMREKGVSK-TPGCSWIGIDD 559
           +  W ++AK+R  M+E+GV K  PG SWI ++ 
Sbjct: 459 VNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMES 491



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 164/344 (47%), Gaps = 43/344 (12%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +++ + K   ++D ++ +  I+  +   ++D A   + ++   ++  +N+MI G+ +   
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             +A+EL+ +M      P   T  S++ +CG +  L   + V G V +N  D + ++ ++
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+D Y   G +  + RVFD M  +DV  W  M++   + G  + A  LF+ M      PD
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMM------PD 174

Query: 321 KITLIGVLSACASIGALDLGKW---VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377
           +                +L  W   +D YA  R          +D A  +F  MP  + +
Sbjct: 175 R----------------NLATWNTLIDGYARLR---------EVDVAELLFNQMPARDII 209

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL-F 436
           SW  MI+  + N R  EAL +F  M+K G    P++VT   V+SAC H G +D G+ + +
Sbjct: 210 SWTTMINCYSQNKRFREALGVFNEMAKHG--ISPDEVTMATVISACAHLGALDLGKEIHY 267

Query: 437 DLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEK 478
            +M   F L    + Y  S ++D+YA+ G L  +     ++ EK
Sbjct: 268 YIMQHGFNL----DVYIGSALIDMYAKCGSLDRSLLMFFKLREK 307


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 297/579 (51%), Gaps = 46/579 (7%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           P+ L   LL+   K       +++  +M    +   N LL  +   +       LF  + 
Sbjct: 47  PTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP 106

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHG 138
             +  ++N +I G ++     + S++LY  + R   ++P   T   + +  + L     G
Sbjct: 107 ERDAVSYNALITGFSSTGSP-ARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALG 165

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR----------------- 181
            SVH  V ++G      V   L+ MYA+ G +  AR+VF E+                  
Sbjct: 166 HSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRC 225

Query: 182 --------------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
                         +RD ++W +M++G ++ G   EA+++F RMR E    D+ T  S+L
Sbjct: 226 KMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSIL 285

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CG L  L  GK +  ++ +   + N ++GSAL+DMY KC ++  A  VF  M  ++++
Sbjct: 286 TACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W AMI  Y QN  S EA+  F+ M+  G+ PD  TL  V+S+CA++ +L+ G      A
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              GL   I            CGSI+DA ++F++M   ++VSW A+++  A  G+A E +
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LFE+M   G   +P+ VTFIGVLSAC  AGLV++G   FD M    G++P  +HY+CM+
Sbjct: 466 DLFEKMLANG--LKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DLY+R+G   EA +F+++MP   D      LL +C+ + N ++ +   + LLE +  N  
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +YV+   + A    W + A +R  MR++ V K PGCSWI
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/558 (32%), Positives = 287/558 (51%), Gaps = 73/558 (13%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A+ +FH++  P    +N  I  L    +K    ++L+ +M+   LK +  T   V  +C 
Sbjct: 728  ANQVFHEMPNPEALLWNEAII-LNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACG 786

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
             + ALN    +H  VF+ GLD D  + + LI+MY++ GKL+ AR+VFD +  R+  SWNS
Sbjct: 787  KMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNS 846

Query: 191  MISGYSKMG-----------------------------------YAKEAVELFGRMREEE 215
            MIS Y+ +G                                   Y +E + +  RM+ E 
Sbjct: 847  MISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEG 906

Query: 216  FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
            F P+  ++ SVL +  +LG L +GK   G+V++N  D + Y+G++LIDMY K  +L  A+
Sbjct: 907  FKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQ 966

Query: 276  RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS------ 329
             VFD M N+++  WN++++ Y+  G+  +A+ L N+M+  G+ PD +T  G++S      
Sbjct: 967  AVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG 1026

Query: 330  ------------------ACASIGALDLGKWVDKYASQRGLRHDIFCG-----------S 360
                              ACAS+  L  GK +   + + G   D+F             S
Sbjct: 1027 CARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSS 1086

Query: 361  IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
            + +A KVF  +      SWN MI   A  G   EA+ +F  M K G    P+ +TF  +L
Sbjct: 1087 LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG--PDAITFTALL 1144

Query: 421  SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
            SAC ++GL+ EG + FD M + + ++P+ EHY CMVDL  RAG+L EAWD +  MP K D
Sbjct: 1145 SACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD 1204

Query: 481  EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
              + GALLG+C+  KN   ++   + L ++E +NS NY++   +++    W+D   +R L
Sbjct: 1205 ATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLREL 1264

Query: 541  MREKGVSKTPGCSWIGID 558
            M   GV      SWI I+
Sbjct: 1265 MGAAGVRNRQVWSWIQIN 1282



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 217/482 (45%), Gaps = 71/482 (14%)

Query: 67   DFNYASLLFHQISRPNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
            DF  A+++F+ +  P  Y  +N  +    ++       L+++ ++   G+  D+  Y   
Sbjct: 622  DFWSAAMVFY-VGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVA 680

Query: 126  FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              +C  ++ +  G+ +H  + K G D D ++  +L+  Y RC  L+ A +VF E+   + 
Sbjct: 681  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 740

Query: 186  VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            + WN  I    +    ++ VELF +M+      +  T+V VL +CG +G L   K + G+
Sbjct: 741  LLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGY 800

Query: 246  VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            V +  +D +  + + LI MY K G L  ARRVFD+M N++  +WN+MI++YA  G  N+A
Sbjct: 801  VFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDA 860

Query: 306  IMLF-----------------------------------NRMKYAGVNPDKITLIGVLSA 330
              LF                                    RM+  G  P+  ++  VL A
Sbjct: 861  WSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQA 920

Query: 331  CASIGALDLGKWVDKYASQRGLRHDIFCG-----------SIDDALKVFEDMPVTNEVSW 379
             + +G L++GK    Y  + G   D++ G           S+  A  VF++M   N  +W
Sbjct: 921  ISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAW 980

Query: 380  NAMISALAFNGRAHEALLLFERMSKEG------------------GAAR----PNDVTFI 417
            N+++S  +F G   +AL L  +M KEG                  G AR    PN  +  
Sbjct: 981  NSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASIT 1040

Query: 418  GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
             +L AC    L+ +G+ +   +S   G I      + ++D+Y+++  L  A     R+  
Sbjct: 1041 CLLRACASLSLLQKGKEI-HCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN 1099

Query: 478  KV 479
            K 
Sbjct: 1100 KT 1101



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 154  DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY-SKMGYAKEAVELFGRMR 212
            D  + +LI+ Y   G   SA  VF     R+ + WNS +  + S  G     +E+F  + 
Sbjct: 607  DAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELH 666

Query: 213  EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
             +  + D       L +C  + D+ LG  + G ++K   DL+ Y+  AL++ YG+C  L 
Sbjct: 667  GKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLE 726

Query: 273  PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
             A +VF  M N + + WN  I    Q+    + + LF +M+++ +  +  T++ VL AC 
Sbjct: 727  KANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACG 786

Query: 333  SIGALDLGKWVDKYASQRGLRHDI-FC----------GSIDDALKVFEDMPVTNEVSWNA 381
             +GAL+  K +  Y  + GL  D+  C          G ++ A +VF+ M   N  SWN+
Sbjct: 787  KMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNS 846

Query: 382  MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
            MIS+ A  G  ++A  LF  +  E    +P+ VT+  +LS     G  +E   +   M  
Sbjct: 847  MISSYAALGFLNDAWSLFYEL--ESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 904

Query: 442  SFGLIPKSEHYSCMVDLYARAGHLS---EAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
              G  P S   + ++   +  G L+   E   +V R     D  V  +L+    K  +  
Sbjct: 905  E-GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLX 963

Query: 499  VSQRVMQLLLEIESSN--SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
             +Q V      +++ N  + N ++S   F    M++D+ ++   M ++G+ K    +W G
Sbjct: 964  SAQAVFD---NMKNRNIFAWNSLVSGYSFKG--MFEDALRLLNQMEKEGI-KPDLVTWNG 1017

Query: 557  I 557
            +
Sbjct: 1018 M 1018


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 297/579 (51%), Gaps = 46/579 (7%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           P+ L   LL+   K       +++  +M    +   N LL  +   +       LF  + 
Sbjct: 47  PTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP 106

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHG 138
             +  ++N +I G ++     + S++LY  + R   ++P   T   + +  + L     G
Sbjct: 107 ERDAVSYNALITGFSSTGSP-ARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALG 165

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR----------------- 181
            SVH  V ++G      V   L+ MYA+ G +  AR+VF E+                  
Sbjct: 166 HSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRC 225

Query: 182 --------------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
                         +RD ++W +M++G ++ G   EA+++F RMR E    D+ T  S+L
Sbjct: 226 KMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSIL 285

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CG L  L  GK +  ++ +   + N ++GSAL+DMY KC ++  A  VF  M  ++++
Sbjct: 286 TACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W AMI  Y QN  S EA+  F+ M+  G+ PD  TL  V+S+CA++ +L+ G      A
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              GL   I            CGSI+DA ++F++M   ++VSW A+++  A  G+A E +
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LFE+M   G   +P+ VTFIGVLSAC  AGLV++G   FD M    G++P  +HY+CM+
Sbjct: 466 DLFEKMLANG--LKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DLY+R+G   EA +F+++MP   D      LL +C+ + N ++ +   + LLE +  N  
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +YV+   + A    W + A +R  MR++ V K PGCSWI
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 259/454 (57%), Gaps = 15/454 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           DN++      + A + ++  G  +H+   K+GL  D  V ++LI MY+ C    +AR V 
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151

Query: 178 DEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           D   +   D VSWN++I+GY   G   +A++ F +M + + + D++TL++ L +C     
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCM 211

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +GK     +V N  ++N YMGS+LI MY KCG +  ARR+FD M +++ V W +MI+ 
Sbjct: 212 MKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y Q G S EAI LF  M+ AGV  D  T+  V+S+C  +GALDLG++V  Y    GL  D
Sbjct: 272 YTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKD 331

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           I            CG I  A  +F  M   +  SW  +I   A NG + EAL LF +M +
Sbjct: 332 ISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWT-VIMGFAANGLSGEALDLFAQMEE 390

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           EGG   PN++TF+GVL++C H GLV++G R F  MSS +G+ P+ EHY CMVDL  RA  
Sbjct: 391 EGG-VMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKL 449

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L+EA  F++ MP   D ++  +LL AC+      +++ V + +  +E +  G  V+ S +
Sbjct: 450 LAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDVLLSTV 509

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +A    W D+ K+R  +     +K PGCS+I +D
Sbjct: 510 YATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVD 543


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/563 (32%), Positives = 296/563 (52%), Gaps = 55/563 (9%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN---------------- 69
           KL+S    C   K  +++   M    +   NF++     + DF                 
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 70  ----YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
                AS LF ++   +  ++N MI G  +        L +Y QM  LG+  D  T   V
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLT-ERGLGIYKQMMYLGIDVDLATIISV 119

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            + CA    L+ G +VHS   K   +   + S++L+ MY++CG LD A +VF+++ ER++
Sbjct: 120 LVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 179

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW SMI+GY++ G++  A+ L  +M +E    D + + S+L +C   G L  GK V  +
Sbjct: 180 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 239

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           +  N M  N ++ +AL+DMY KCG++  A  VF  MV KD+++WN M+            
Sbjct: 240 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV------------ 287

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD---------- 355
                      + PD  T+  +L ACAS+ AL+ GK +  Y  + G   D          
Sbjct: 288 ---------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 338

Query: 356 -IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
            + CG +  A  +F+ +P  + VSW  MI+    +G  +EA+  F  M   G    P++V
Sbjct: 339 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG--IEPDEV 396

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           +FI +L AC H+GL+++G R F +M + F + PK EHY+CMVDL +R G+LS+A+ F+E 
Sbjct: 397 SFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIET 456

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           +P   D  + GALL  C+   + +++++V + + E+E  N+G YV+ + I+A  + W++ 
Sbjct: 457 LPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEV 516

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
            +MR  + +KG+ K PGCSWI I
Sbjct: 517 KRMREKIGKKGLRKNPGCSWIEI 539


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 294/541 (54%), Gaps = 53/541 (9%)

Query: 35  PSTKTVQQIHTQMLINFIQKPNFLL-IRIID----LKDFNYASLLFHQISRPNEYAFNVM 89
           P  KT++++H+++LI+    PN  L I+++       +  Y   +F +I+  N   FNVM
Sbjct: 49  PDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVM 108

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           IR        Y  +L ++  M   G  PDN+TYP V  +C+    L  G+ +H +V K+G
Sbjct: 109 IRSYVNN-GLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLG 167

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           LD + ++ + L++MY +C  LD+AR+V DE+  RD+VSWNSM++GY++ G   +A++L  
Sbjct: 168 LDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCR 227

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
            M + +  PD  T+ S+L +                 V N                  C 
Sbjct: 228 EMEDLKLKPDAGTMGSLLPA-----------------VTNT----------------SCD 254

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            ++  + +F  +  K +++WN MI  Y  N + NEA+ L+ +M+  GV PD +++  VL 
Sbjct: 255 NVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLP 314

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           AC  + A  LG+ + +Y  ++ LR ++            CG + +A  VF+ M   + VS
Sbjct: 315 ACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVS 374

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W +MISA   +G+  +A+ LF++M   G    P+ + F+ VL+AC HAGLVDEGR  F+L
Sbjct: 375 WTSMISAYGMSGQGKDAVALFKKMRDSGFT--PDWIAFVSVLAACSHAGLVDEGRYCFNL 432

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M+  +G+ P  EHY+CMVDL  RAG + EA+    +MP + +E V G+LL AC+   + +
Sbjct: 433 MAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMN 491

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++      L ++    SG YV+ S I+A    W D   +R++M  KG+ K PG S + I+
Sbjct: 492 IALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEIN 551

Query: 559 D 559
           D
Sbjct: 552 D 552


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 279/498 (56%), Gaps = 14/498 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF+ +   N  ++N +I G   +  K   +L ++  +++ GL  D  +    F +CA
Sbjct: 329 AQKLFNSLPNHNLQSYNAIIVGYARS-DKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA 387

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +     G+ VH    K     +  V+++++ MY +CG L  A  VF+E+  RD VSWN+
Sbjct: 388 VIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNA 447

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+ + + G  ++ + LF  M +    PDE T  SVL +C     L  G  +   ++K++
Sbjct: 448 IIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR 507

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ ++G ALIDMY KCG +  A ++ D +  + VV+WNA+I+ ++    S EA   F+
Sbjct: 508 LGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFS 567

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M   GV+PD  T   +L  CA++  ++LGK +     ++ L+ D +           CG
Sbjct: 568 KMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 627

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           ++ D   +FE  P  + V+WNAM+   A +G   EAL +FE M  E    +PN  TF+ V
Sbjct: 628 NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN--VKPNHATFLAV 685

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC H GLV++G   F  M S++GL P+ EHYSC+VD+  R+G +S+A + +E MP + 
Sbjct: 686 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEA 745

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D ++   LL  C+   N +V+++    +L++E  +S  YV+ S I+AN  MW++  K+R 
Sbjct: 746 DAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRK 805

Query: 540 LMREKGVSKTPGCSWIGI 557
           +MR  G+ K PGCSWI I
Sbjct: 806 MMRFNGLKKEPGCSWIEI 823



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 212/419 (50%), Gaps = 21/419 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            FH +   N  +++ +I G           L+L+ +M++ G+     T+  VF SCA L 
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQN-DDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLS 289

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +H    K     D  +  + + MY +C  L  A+K+F+ +   +L S+N++I 
Sbjct: 290 ALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIV 349

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++     EA+ +F  +++     DE++L     +C  +   + G  V G  +K+    
Sbjct: 350 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQS 409

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMYGKCGALV A  VF+ MV++D V+WNA+I A+ QNG   + + LF  M 
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 469

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD+ T   VL ACA   AL+ G  +     +  L  D F           CG ++
Sbjct: 470 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 529

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A K+ + +     VSWNA+IS  +   ++ EA   F +M + G    P++ T+  +L  
Sbjct: 530 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG--VDPDNFTYATILDT 587

Query: 423 CVHAGLVDEGRRLF-DLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEK 478
           C +   V+ G+++   ++        +S+ Y  S +VD+Y++ G++ +     E+ P +
Sbjct: 588 CANLVTVELGKQIHAQIIKKEL----QSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 642



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 251/517 (48%), Gaps = 19/517 (3%)

Query: 6   KAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           +A++R +  TE      +   L+ +  KC   +   ++   M        N +L      
Sbjct: 63  QAHAR-MILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGR 121

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
            D   A  LF  +   +  ++N +I G       +   + ++ QM R+G   D  T+  V
Sbjct: 122 GDIGVAQKLFDAMPERDVVSWNSLISGYLHN-GDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             SC++L     G+ +H    K+G D D     +L+ MYA+C KLD + + F  + E++ 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW+++I+G  +    +  +ELF  M++      + T  SV  SC  L  L LG  + G 
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K     +  +G+A +DMY KC  L  A+++F+++ N ++ ++NA+I  YA++    EA
Sbjct: 301 ALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEA 360

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + +F  ++ +G+  D+++L G   ACA I     G  V   + +   + +I         
Sbjct: 361 LGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDM 420

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG++ +A  VFE+M   + VSWNA+I+A   NG   + L LF  M + G    P++ 
Sbjct: 421 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG--MEPDEF 478

Query: 415 TFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           T+  VL AC     ++ G  + + ++ S  GL   S     ++D+Y++ G + +A    +
Sbjct: 479 TYGSVLKACAGWQALNCGMEIHNRIIKSRLGL--DSFVGIALIDMYSKCGMMEKAEKLHD 536

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           R+ E+   +   A++     QK ++ +Q+    +LE+
Sbjct: 537 RLAEQT-VVSWNAIISGFSLQKQSEEAQKTFSKMLEM 572



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 191/436 (43%), Gaps = 56/436 (12%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  +F  C++  AL  G   H+ +          V++ LI MY +C  L+ A KVFD +
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP---------------------- 218
            +RD VSWN+M+ GY+  G    A +LF  M E + +                       
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 219 ---------DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
                    D  T   VL SC  L D   G  + G  VK   D +   GSAL+DMY KC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            L  + + F +M  K+ V+W+A+I    QN      + LF  M+ AGV   + T   V  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           +CA + AL LG  +  +A +     D+            C ++ DA K+F  +P  N  S
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV-----HAGLVDEGR 433
           +NA+I   A + +  EAL +F  + K G     ++V+  G   AC        GL   G 
Sbjct: 344 YNAIIVGYARSDKGIEALGMFRLLQKSGLGL--DEVSLSGAFRACAVIKGDLEGLQVHGL 401

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            +  L  S+  +       + ++D+Y + G L EA    E M  + D +   A++ A ++
Sbjct: 402 SMKSLCQSNICVA------NAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAAHEQ 454

Query: 494 QKNTDVSQRVMQLLLE 509
             N + +  +   +L+
Sbjct: 455 NGNEEKTLSLFVWMLQ 470


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 325/624 (52%), Gaps = 81/624 (12%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
            +A + +  F  LN       + L+  K+C ++ T+ Q+H  + I  + +      ++I+
Sbjct: 334 GEASAEYACFFTLNS-----SRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIE 388

Query: 65  ----LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY-------------------- 100
               +  F  +  +F    +P+ + + V+I+     W  +                    
Sbjct: 389 SYAQIGIFESSKRVFDTFPKPDSFMWGVLIK--CYVWGGFFEEAVSLYHEMVYQDQTQIS 446

Query: 101 --------------------------SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
                                     S  L ++ QM    ++PD+ T   V  +C+ L +
Sbjct: 447 NFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGS 506

Query: 135 L--------NHGVSVHSSVFKIGLD-EDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
           L          G SVH  V +  +D E D +  +L+ +YA  G L    KVF+ I+E+ +
Sbjct: 507 LRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI 566

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +SWN++IS +++ G  +EA+ LF +M+ +  +PD  +L S L +CG +    LG  + G+
Sbjct: 567 LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGY 626

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++K   + N ++ +ALIDMY KCG +  A ++F+ +  K +VTWN+MI  ++QNG S EA
Sbjct: 627 IIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEA 685

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           I LF++M    V  DK+T + V+ AC+ +G L+ GKWV       GLR D +        
Sbjct: 686 ITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDM 745

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG +  A  VF+ M   + VSW+ MI+    +G+ +  + LF +M   G   +PND+
Sbjct: 746 YSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML--GSGIKPNDI 803

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ +LSAC HAG V+EG+  F+ MS  FG+ PK +H++CMVDL +RAG L+ A+  +  
Sbjct: 804 TFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITS 862

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           +P   +  + GALL  C+  K  D+ + + + LL+++++++G Y + S I+A    WD  
Sbjct: 863 LPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKF 922

Query: 535 AKMRALMREKGVSKTPGCSWIGID 558
            K+R++M+ KG+ K PG S I ID
Sbjct: 923 GKVRSMMKSKGLRKVPGYSTIEID 946


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 181/533 (33%), Positives = 290/533 (54%), Gaps = 20/533 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRG-LTT 95
           +QIH     +  +    ++  +IDL       + A  LF  +   N  ++  MI G +  
Sbjct: 241 RQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQN 300

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           ++   + ++ +++ M + G +PD F    +  SC +L A+  G  +H+ V K  L+ D++
Sbjct: 301 SFN--AEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEY 358

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++LI MYA+C  L  AR VFD + E D +S+N+MI GYSK     EAV +F RMR   
Sbjct: 359 VKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFS 418

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P  +T VS+LG       + L K + G ++K+   L+ Y  SALID+Y KC  +  A+
Sbjct: 419 LRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAK 478

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            VF+ +  KD+V WN+MI  +AQN    EAI LFN++  +G+ P++ T + +++  +++ 
Sbjct: 479 TVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLA 538

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           ++  G+    +  + G+ +D             CG I +   +FE     + + WN+MI+
Sbjct: 539 SMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMIT 598

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
             A +G A EAL +F  M +      PN VTF+GVLSAC HAG V EG   F+ M S++ 
Sbjct: 599 TYAQHGHAEEALQVFRLMGE--AEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYD 656

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           + P  EHY+ +V+L+ R+G L  A +F+ERMP K    V  +LL AC    N ++ +   
Sbjct: 657 IEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAA 716

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++ L  + ++SG YV+ S I+A+  +W D   +R  M   G  K  GCSWI +
Sbjct: 717 EMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEV 769



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/511 (27%), Positives = 253/511 (49%), Gaps = 25/511 (4%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQIS 79
           L S+L+ C  +K V   +Q+H   +   +    ++   +I+L       + A L+FH + 
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 182

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
                 +N +I G          +L+L+ +M   G++PD F       +C+ L  L  G 
Sbjct: 183 VRTPVTWNTVITGYAQIGCG-GVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGR 241

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H   ++   + D  V + LI +Y +C +L +ARK+FD +  R+LVSW +MISGY +  
Sbjct: 242 QIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNS 301

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +  EA+ +F  M +  + PD     S+L SCG L  +  G+ +   V+K  ++ + Y+ +
Sbjct: 302 FNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKN 361

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALIDMY KC  L  AR VFDA+   D +++NAMI  Y++N    EA+ +F RM++  + P
Sbjct: 362 ALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRP 421

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
             +T + +L   +S  A++L K +     + G   D++           C  ++DA  VF
Sbjct: 422 SLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVF 481

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             +   + V WN+MI   A N +  EA+ LF ++   G A  PN+ TF+ +++       
Sbjct: 482 NMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMA--PNEFTFVALVTVASTLAS 539

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           +  G++    +  + G+       + ++D+YA+ G + E     E    + D I   +++
Sbjct: 540 MFHGQQFHAWIIKA-GVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGE-DVICWNSMI 597

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
               +  + + + +V +L+ E E     NYV
Sbjct: 598 TTYAQHGHAEEALQVFRLMGEAEVEP--NYV 626



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 245/521 (47%), Gaps = 28/521 (5%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL    +L     A  LF ++   N  ++  +I  + T   +   ++ L+   ++   
Sbjct: 57  NLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVI-SMYTQHGRDDCAISLFVAFQKASC 115

Query: 116 K-PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           + P+ F    V  +C    A++ G  VH    K+ LD + +V  +LI +YA+ G +D A 
Sbjct: 116 EVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAM 175

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            VF  +  R  V+WN++I+GY+++G    A+ELF RM  E   PD   L S + +C  LG
Sbjct: 176 LVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALG 235

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L  G+ + G+  ++  + +  + + LID+Y KC  L  AR++FD M  +++V+W  MI+
Sbjct: 236 FLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMIS 295

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            Y QN  + EAI +F  M  AG  PD      +L++C S+ A+  G+ +  +  +  L  
Sbjct: 296 GYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEA 355

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D +           C  + +A  VF+ +   + +S+NAMI   + N    EA+ +F+RM 
Sbjct: 356 DEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRM- 414

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVD 457
               + RP+ +TF+ +L        V   +   +L     GLI KS         S ++D
Sbjct: 415 -RFFSLRPSLLTFVSLLG-------VSSSQLAIELSKQIHGLIIKSGTSLDLYAASALID 466

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           +Y++   +++A      +  K   I    + G  Q ++  +  +   QLLL   + N   
Sbjct: 467 VYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFT 526

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +V    + + L       +  A + + GV   P  S   ID
Sbjct: 527 FVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALID 567



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 196/378 (51%), Gaps = 22/378 (5%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           ++H+     G  +D  +++ L+  Y+  G+L  AR +FD +  R+LVSW S+IS Y++ G
Sbjct: 39  AIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHG 98

Query: 200 YAKEAVELFGRMREEEF-LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               A+ LF   ++    +P+E  L SVL +C     + LG+ V G  VK  +D N Y+G
Sbjct: 99  RDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVG 158

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +ALI++Y K G +  A  VF A+  +  VTWN +IT YAQ G    A+ LF+RM   GV 
Sbjct: 159 TALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVR 218

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD+  L   +SAC+++G L+ G+ +  YA +     D             C  +  A K+
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKL 278

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ M   N VSW  MIS    N    EA+ +F  M++ G   +P+      +L++C    
Sbjct: 279 FDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGW--QPDGFACTSILNSCGSLA 336

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            + +GR++    +       +++ Y  + ++D+YA+  HL+EA    + + E  D I   
Sbjct: 337 AIWQGRQIH---AHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAED-DAISYN 392

Query: 486 ALLGACQKQKNTDVSQRV 503
           A++      KN D+++ V
Sbjct: 393 AMIEG--YSKNRDLAEAV 408


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 183/558 (32%), Positives = 311/558 (55%), Gaps = 33/558 (5%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
           TEL   +L RE   +LLK      +  +++ Q         N LL+        + A  +
Sbjct: 277 TELAQLNLGRELHAALLK------SGSEVNIQC--------NALLVMYTKCGRVDSALRV 322

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
           F +I   +  ++N M   L+   Q   Y+ +++   +M R G +PD+     +  +  +L
Sbjct: 323 FREIDEKDYISWNSM---LSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHL 379

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
             L +G  VH+   K  LD D  V ++L+ MY +C  ++ +  VFD +R +D +SW ++I
Sbjct: 380 GWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTII 439

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           + Y++     EA+E+F   ++E    D + + S+L +C  L  ++L K +  + ++N + 
Sbjct: 440 TCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL- 498

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           L+  + + +ID+YG+CG +  + ++F+ +  KD+VTW +MI  YA +GL NEA++LF  M
Sbjct: 499 LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEM 558

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSI 361
           +   V PD + L+ +L A   + +L  GK V  +  +R             D++  CGS+
Sbjct: 559 QSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSL 618

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             ALKVF  +   + V W AMI+A   +G   +A+ LF+RM + G    P+ V+F+ +L 
Sbjct: 619 SGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTG--VTPDHVSFLALLY 676

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC H+ LV+EG+   D+M S++ L P  EHY+C+VDL  R+G   EA++F++ MP K   
Sbjct: 677 ACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKS 736

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
           +V  +LLGAC+  KN +++      LLE+E  N GNYV+ S +FA +  W+++ ++RA +
Sbjct: 737 VVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARI 796

Query: 542 REKGVSKTPGCSWIGIDD 559
            E+G+ K P CSWI I +
Sbjct: 797 SERGLRKDPACSWIEIGN 814



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/436 (30%), Positives = 230/436 (52%), Gaps = 22/436 (5%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N MI G       +  +L L+  M+R  L  +++T   V   C  L  LN G  +H++
Sbjct: 233 SWNSMISGCLQNGM-FLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAA 291

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + K G  E +   ++L+ MY +CG++DSA +VF EI E+D +SWNSM+S Y + G   EA
Sbjct: 292 LLKSG-SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEA 350

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           +E    M    F PD   +VS+  + G LG L+ GK V  + +K ++D +  +G+ L+DM
Sbjct: 351 IEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDM 410

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KC  +  +  VFD M  KD ++W  +IT YAQ+    EA+ +F   +  G+  D + +
Sbjct: 411 YMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMI 470

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRH--------DIF--CGSIDDALKVFEDMPVT 374
             +L AC+ +  + L K +  YA + GL          DI+  CG +  +LK+FE +   
Sbjct: 471 GSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQK 530

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           + V+W +MI+  A +G  +EAL+LF  M  +    +P+ V  + +L A      + +G+ 
Sbjct: 531 DIVTWTSMINCYANSGLLNEALVLFAEM--QSTDVQPDSVALVSILGAIGGLSSLAKGKE 588

Query: 435 LFD-LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC-- 491
           +   L+  +F +  +    S +VD+Y+  G LS A      +  K D ++  A++ A   
Sbjct: 589 VHGFLIRRNFHM--EEAIVSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGM 645

Query: 492 --QKQKNTDVSQRVMQ 505
               ++  D+ +R++Q
Sbjct: 646 HGHGKQAIDLFKRMLQ 661



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 207/427 (48%), Gaps = 51/427 (11%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDD-HVSHSLITMYARCGKLD 171
           G  P    Y +V    A   A+  GV VH+     G L+ DD  ++  L+ MY +CG++ 
Sbjct: 53  GRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVA 112

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLG 228
            AR +FD +  R + SWN++I  Y   G A EA+ ++  MR        PD  TL SVL 
Sbjct: 113 DARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLK 172

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN-KDVV 287
           + G  GD   G  V G  VK+ +D + ++ +ALI MY KCG L  A RVF+ M + +DV 
Sbjct: 173 ASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVA 232

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +WN+MI+   QNG+  +A+ LF  M+ A ++ +  T +GVL  C  +  L+LG+ +    
Sbjct: 233 SWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL 292

Query: 348 SQRGLRHDIF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            + G   +I           CG +D AL+VF ++   + +SWN+M+S    NG   EA+ 
Sbjct: 293 LKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIE 352

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR------------------------ 433
               M +  G  +P+    + + SA  H G +  G+                        
Sbjct: 353 FISEMLR--GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDM 410

Query: 434 ----RLFDLMSSSFGLIPKSEH--YSCMVDLYARAGHLSEAWD-FVERMPE--KVDEIVL 484
               R  +  +  F  +   +H  ++ ++  YA++    EA + F E   E  KVD +++
Sbjct: 411 YMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMI 470

Query: 485 GALLGAC 491
           G++L AC
Sbjct: 471 GSILEAC 477


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 263/485 (54%), Gaps = 45/485 (9%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           KP    Y  +  SC     L  G  VH  +   G      + + L+ MYA+C  L  ++K
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL--------------PDE- 220
           +FDE+ ERDL SWN +ISGY+KMG  +EA  LF +M E +                P+E 
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 221 -----------------ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
                             T+ S L +   +  L +GK + G++++  +D +  + SAL D
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MYGKCG++  AR +FD MV++D+VTW AMI  Y Q+G   E   LF  +  +G+ P++ T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
             GVL+ACA+  + +LGK V  Y ++ G     F           CG++  A +VF++ P
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETP 366

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             +  SW ++I+  A NG+  EA+  FE + K G   +P+ +TF+GVLSAC HAGLVD+G
Sbjct: 367 QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSG--TQPDHITFVGVLSACAHAGLVDKG 424

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
              F  +   +GL   ++HY+C++DL AR+G   EA + + +M  K D+ +  +LLG C+
Sbjct: 425 LDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCR 484

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N  ++QR  + L EIE  N   YV  + I+A   MW + AK+R  M ++GV K PG 
Sbjct: 485 IHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGL 544

Query: 553 SWIGI 557
           SWI I
Sbjct: 545 SWIAI 549



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 223/481 (46%), Gaps = 32/481 (6%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI 60
           +L + K   +H+  +       +  +LL +  KC S    Q++  +M    +   N L+ 
Sbjct: 85  LLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILIS 144

Query: 61  RIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDN 119
               +     A  LF ++   + +++  MI G      + + +L+L+  MKR    K + 
Sbjct: 145 GYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRH-DRPNEALELFRMMKRSDNSKSNK 203

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           FT      + A +  L  G  +H  + + GLD D+ V  +L  MY +CG ++ AR +FD+
Sbjct: 204 FTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDK 263

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + +RD+V+W +MI  Y + G  KE  +LF  +      P+E T   VL +C +     LG
Sbjct: 264 MVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELG 323

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           K V G++ +   D   +  SAL+ MY KCG +V A RVF      D+ +W ++I  YAQN
Sbjct: 324 KKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQN 383

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFC 358
           G  +EAI  F  +  +G  PD IT +GVLSACA  G +D G  +      Q GL H    
Sbjct: 384 GQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTH---- 439

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
                               +  +I  LA +G+  EA  +  +MS      +P+   +  
Sbjct: 440 ----------------TADHYACIIDLLARSGQFDEAENIISKMS-----MKPDKFLWAS 478

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPE 477
           +L  C   G +   +R  + +   F + P++   Y  + ++YA AG  SE     + M +
Sbjct: 479 LLGGCRIHGNLKLAQRAAEAL---FEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDD 535

Query: 478 K 478
           +
Sbjct: 536 R 536


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 316/589 (53%), Gaps = 47/589 (7%)

Query: 14  FTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL 73
           F    DP +    L+ +  +C       ++ +Q+    I   N +L     L   ++A  
Sbjct: 157 FDFWGDPDV-ETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 215

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            F  ++  +  ++N+MI  L+ +  +   +L L  +M R G++ D+ TY     +CA L 
Sbjct: 216 YFEDMAERDVVSWNMMIAALSQS-GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 274

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           +L  G  +H+ V +     D +V+ +LI +YA+CG    A++VF+ +++R+ VSW  +I 
Sbjct: 275 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 334

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G  +     ++VELF +MR E    D+  L +++  C +  DL LG+ +    +K+  + 
Sbjct: 335 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR 394

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ-----------NGLS 302
              + ++LI +Y KCG L  A  VF +M  +D+V+W +MITAY+Q           +G++
Sbjct: 395 AIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMA 454

Query: 303 NEAIMLFNRMKYA---------------------GVNPDKITLIGVLSACASIGALDLGK 341
               + +N M  A                      V PD +T + +   CA IGA  LG 
Sbjct: 455 TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGD 514

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  +  + GL  ++            CG I +A K+F+ +   + VSWNAMI+  + +G
Sbjct: 515 QIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 574

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              +A   F+ M  +G  A+P+ ++++ VLS C H+GLV EG+  FD+M+   G+ P  E
Sbjct: 575 MGKQAAKTFDDMLSKG--AKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 632

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           H+SCMVDL  RAGHL+EA D +++MP K    V GALL AC+   N ++++   + + E+
Sbjct: 633 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 692

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +S +SG+Y++ +KI+++    DDSA++R LMR+KG+ K PG SW+ +++
Sbjct: 693 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVEN 741



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 185/423 (43%), Gaps = 55/423 (13%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL------GLKPDNFTYPFVF 126
           LL   I  PN    N+M+ G        S + +L+ +M R        L  D       +
Sbjct: 77  LLRADIKEPNVITHNIMMNGYAKQ-GSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSW 135

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
           +SC  L        +    +K     D  V  +L+ M+ RCG +D A ++F +I    + 
Sbjct: 136 MSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 195

Query: 187 SWNSMISGYSKMGYAKEAVELF---------------------GRMREEEFLP------- 218
             NSM++GY+K+     A+E F                     GR+RE   L        
Sbjct: 196 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 255

Query: 219 ---DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
              D  T  S L +C  L  L  GK +   V+++   ++ Y+ SALI++Y KCG+   A+
Sbjct: 256 VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAK 315

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           RVF+++ +++ V+W  +I    Q    ++++ LFN+M+   +  D+  L  ++S C +  
Sbjct: 316 RVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRM 375

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
            L LG+ +     + G    I            CG + +A  VF  M   + VSW +MI+
Sbjct: 376 DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMIT 435

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
           A +  G   +A   F+      G A  N +T+  +L A +  G  ++G +++  M S   
Sbjct: 436 AYSQIGNIIKAREFFD------GMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 489

Query: 445 LIP 447
           + P
Sbjct: 490 VTP 492



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 170/406 (41%), Gaps = 64/406 (15%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-EIRERDLV 186
           SC +  AL    ++H  +  +GL     + ++L+  Y  CG L  AR++   +I+E +++
Sbjct: 29  SCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVI 88

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEE------FLPDEITLVSVLGSCGDLGDLVLGK 240
           + N M++GY+K G   +A ELF RM   +       + D         SCG LG   L  
Sbjct: 89  THNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAP 148

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV----------------------- 277
            + G   K     +  + +AL+DM+ +CG +  A R+                       
Sbjct: 149 QLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLY 208

Query: 278 --------FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
                   F+ M  +DVV+WN MI A +Q+G   EA+ L   M   GV  D  T    L+
Sbjct: 209 GIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLT 268

Query: 330 ACASIGALDLGK-----------WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS 378
           ACA + +L  GK            +D Y +   +     CGS  +A +VF  +   N VS
Sbjct: 269 ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVS 328

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W  +I          +++ LF +M  E  A   +      ++S C +   +  GR+L   
Sbjct: 329 WTVLIGGSLQYECFSKSVELFNQMRAELMAI--DQFALATLISGCFNRMDLCLGRQLHS- 385

Query: 439 MSSSFGLIPKSEH------YSCMVDLYARAGHLSEAWDFVERMPEK 478
                 L  KS H       + ++ LYA+ G L  A      M E+
Sbjct: 386 ------LCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 425



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 58/307 (18%)

Query: 215 EFLPDEIT--LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
             LP  +T  L   L SCG  G L   + + G +V   +    ++ + L+  Y  CGAL 
Sbjct: 13  RLLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALS 72

Query: 273 PARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN------PDKITLI 325
            ARR+  A + + +V+T N M+  YA+ G  ++A  LF+RM    V        D     
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPA 132

Query: 326 GVLSACASIGALDLGK-----------WVDK-----------------YASQ---RGLRH 354
           G   +C ++G  +L             W D                  +AS+   +  R 
Sbjct: 133 GSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 192

Query: 355 DIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            IFC +           ID A++ FEDM   + VSWN MI+AL+ +GR  EAL L   M 
Sbjct: 193 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYAR 461
           ++G   R +  T+   L+AC     +  G++L   +  S   +P+ + Y  S +++LYA+
Sbjct: 253 RKG--VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS---LPQIDPYVASALIELYAK 307

Query: 462 AGHLSEA 468
            G   EA
Sbjct: 308 CGSFKEA 314


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 178/508 (35%), Positives = 285/508 (56%), Gaps = 20/508 (3%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYP 123
           L   ++A  +F  +  P+   +N ++ GL+      S +++ + +M   G ++PD  T  
Sbjct: 162 LSRVDHARKVFDTVPSPDTVLWNTLLAGLSG-----SEAVESFARMVCDGSVRPDATTLA 216

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            V  + A +  +  G  VHS   K GL E +HV   LI++Y++CG ++SAR +FD + + 
Sbjct: 217 SVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKP 276

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           DLV++N++ISGYS  G    +V LF  +      P+  TLV+++      G  +L + + 
Sbjct: 277 DLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLH 336

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           GFV+K+    N  + +A+  ++ +   +  AR+ FD M  K + +WNAMI+ YAQNGL+ 
Sbjct: 337 GFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTE 396

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
            A+ LF +M    V P+ IT+   LSACA +GAL LGKW+ +  ++  L  +++      
Sbjct: 397 MAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALI 456

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGSI +A ++F  M   N VSWNAMI+    +G+  EAL L++ M        P 
Sbjct: 457 DMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLD--AHLLPT 514

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
             TF+ VL AC H GLV+EG ++F  M+  + + P  EH +CMVDL  RAG L EA++ +
Sbjct: 515 SATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELI 574

Query: 473 ERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
              P+  V   V GALLGAC   K++D+++   Q L E++  NSG YV+ S +  + K +
Sbjct: 575 SEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQY 634

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++A +R   + + + KTPG + I I +
Sbjct: 635 SEAAVVRQEAKSRKLVKTPGYTLIEIGN 662



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 203/424 (47%), Gaps = 38/424 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF    RP+ +  N ++R L +             + + L   PD+F++ F   S A L 
Sbjct: 74  LFRGFPRPDRFLRNALLRSLPS------------LRPRLLFPCPDSFSFAFAATSLAALC 121

Query: 134 ALNHGVS-------VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
           +   G +       +H+     G   D  V+ +L  +Y    ++D ARKVFD +   D V
Sbjct: 122 SRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTV 181

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            WN++++G S      EAVE F RM  +    PD  TL SVL +  ++ D+ +G+ V  F
Sbjct: 182 LWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSF 237

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
             K  +  + ++ + LI +Y KCG +  AR +FD M   D+V +NA+I+ Y+ NG+   +
Sbjct: 238 AEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSS 297

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD---------I 356
           + LF  +   G+ P+  TL+ ++   +  G   L + +  +  + G   +         +
Sbjct: 298 VNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTL 357

Query: 357 FC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
            C    ++ A K F+ MP     SWNAMIS  A NG    A+ LFE+M K     RPN +
Sbjct: 358 HCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLN--VRPNPI 415

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T    LSAC   G +  G+ L  +++    L P     + ++D+YA+ G +SEA      
Sbjct: 416 TISSTLSACAQLGALSLGKWLHRIITEE-DLEPNVYVMTALIDMYAKCGSISEARRIFNT 474

Query: 475 MPEK 478
           M  K
Sbjct: 475 MDNK 478


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 305/557 (54%), Gaps = 31/557 (5%)

Query: 17  LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL--- 73
           L+ PSLL   L +L K C S   + QIH +++   +++   L+   I     + +SL   
Sbjct: 5   LSHPSLL--SLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYS 62

Query: 74  --LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCA 130
             +F ++  P  Y +N +I+G +  +  +  ++ +  +M R GL +PD +T+P V   C+
Sbjct: 63  SSVFERVPSPGTYLWNHLIKGYSNKFL-FFETVSILMRMMRTGLARPDEYTFPLVMKVCS 121

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N   +  G SVH  V +IG D+D  V  S +  Y +C  L SARKVF E+ ER+ VSW +
Sbjct: 122 NNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTA 181

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           ++  Y K G  +EA  +F  M E         +  ++ S    GDLV  K +  F    K
Sbjct: 182 LVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKS----GDLVNAKKL--FDEMPK 235

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            D+  Y  +++ID Y K G +V AR +F+     DV  W+A+I  YAQNG  NEA  +F+
Sbjct: 236 RDIISY--TSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFS 293

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG------------LRHDIFC 358
            M    V PD+  ++G++SAC+ +G  +L + VD Y  QR             +  +  C
Sbjct: 294 EMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKC 353

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G +D A K+FE+MP  + VS+ +M+  +A +G   EA+ LFE+M  EG    P++V F  
Sbjct: 354 GHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEG--IVPDEVAFTV 411

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L  C  + LV+EG R F+LM   + ++   +HYSC+V+L +R G L EA++ ++ MP +
Sbjct: 412 ILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE 471

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
                 G+LLG C    NT++++ V + L E+E  ++G+YV+ S I+A L  W D A +R
Sbjct: 472 AHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLR 531

Query: 539 ALMREKGVSKTPGCSWI 555
             M E G++K  G SWI
Sbjct: 532 DKMNENGITKICGRSWI 548


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 268/456 (58%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L+P+   Y  +   C  L  L  G ++H+ +     ++D  + + ++ MYA+CG L+ A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            +FD++  +D+VSW  +ISGYS+ G A EA+ LF +M    F P+E TL S+L + G   
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGP 220

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
               G+ +  F +K   D+N ++GS+L+DMY +   +  A+ +F+++  K+VV+WNA+I 
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+ G     + LF +M   G  P   T   V +ACAS G+L+ GKWV  +  + G + 
Sbjct: 281 GHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQP 340

Query: 355 ---------DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
                    D++   GSI DA KVF  +   + VSWN++IS  A +G   EAL LFE+M 
Sbjct: 341 IAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQML 400

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K     +PN++TF+ VL+AC H+GL+DEG+  F+LM     +  +  H+  +VDL  RAG
Sbjct: 401 K--AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKH-KIEAQVAHHVTVVDLLGRAG 457

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L+EA  F+E MP K    V GALLG+C+  KN D+     + + E++  +SG +V+ S 
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+     D+AK+R +M+E GV K P CSW+ I++
Sbjct: 518 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIEN 553



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 210/390 (53%), Gaps = 22/390 (5%)

Query: 17  LNDPSLLREKLL--SLLKKCPSTKTVQQ---IHTQMLINFIQKP----NFLLIRIIDLKD 67
           +N  SL  E+ L   +L KC   + ++Q   IH  +  +  +      NF+L        
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
              A  LF ++   +  ++ V+I G + + Q  S +L L+ +M  LG +P+ FT   +  
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQA-SEALALFPKMLHLGFQPNEFTLSSLLK 214

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +     + +HG  +H+   K G D + HV  SL+ MYAR   +  A+ +F+ +  +++VS
Sbjct: 215 ASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS 274

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN++I+G+++ G  +  + LF +M  + F P   T  SV  +C   G L  GKWV   V+
Sbjct: 275 WNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVI 334

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+      Y+G+ LIDMY K G++  A++VF  +V +D+V+WN++I+ YAQ+GL  EA+ 
Sbjct: 335 KSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQ 394

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQRGLRHDIF------ 357
           LF +M  A V P++IT + VL+AC+  G LD G++    + K+  +  + H +       
Sbjct: 395 LFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLG 454

Query: 358 -CGSIDDALKVFEDMPVTNEVS-WNAMISA 385
             G +++A K  E+MP+    + W A++ +
Sbjct: 455 RAGRLNEANKFIEEMPIKPTAAVWGALLGS 484


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 300/533 (56%), Gaps = 18/533 (3%)

Query: 41  QQIHTQML---INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
           +++H  +L     F  + N LL+        + A  +F +I   +  ++N M+       
Sbjct: 285 RELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQN- 343

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157
           + Y+ ++  + +M + G  PD+     +  +  +L  L +G  VH+   K  LD D  ++
Sbjct: 344 RLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIA 403

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           ++L+ MY +C  ++ + +VFD +R +D VSW ++I+ Y++     EA+  F   ++E   
Sbjct: 404 NTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIK 463

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            D + + S+L +C  L  + L K V  + ++N + L+  + + +ID+YG+CG +  A  +
Sbjct: 464 VDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNI 522

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+ +  KD+VTW +M+  +A+NGL +EA+ LF +M  AG+ PD + L+G+L A A + +L
Sbjct: 523 FEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSL 582

Query: 338 DLGKWVD------KYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
             GK +       K+  +  +   +      CGS++ ALKVF++    + V W AMI+A 
Sbjct: 583 TKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINAT 642

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
             +G   +A+ +F+RM + G    P+ V+F+ +L AC H+ LVDEG+   D+M S + L 
Sbjct: 643 GMHGHGKQAIYIFKRMLETG--VSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQ 700

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P  EHY+C+VDL  R+G   EA+ F++ MP +   +V  ALLGAC+  KN +++      
Sbjct: 701 PWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDK 760

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           LLE+E  N GNYV+ S +FA +  W++  ++R  M E+G+ K P CSWI I +
Sbjct: 761 LLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGN 813



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 225/418 (53%), Gaps = 17/418 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+ +M+  G   +++T   V   CA L  LNHG  +H+++ K G  E +   ++L+ 
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCG-TEFNIQCNALLV 307

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYARCG +DSA +VF EI ++D +SWNSM+S Y +     EA++ FG M +  F PD   
Sbjct: 308 MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +VS+L + G LG L+ G+ V  + VK ++D +  + + L+DMY KC ++  + RVFD M 
Sbjct: 368 IVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            KD V+W  +I  YAQ+   +EAI  F   +  G+  D + +  +L AC+ + ++ L K 
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQ 487

Query: 343 VDKYASQRGLRH--------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
           V  YA + GL          DI+  CG +  AL +FE +   + V+W +M++  A NG  
Sbjct: 488 VHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLL 547

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEH 451
           HEA+ LF +M   G   +P+ V  +G+L A      + +G+ +   +    G  P +   
Sbjct: 548 HEAVALFGKMLNAG--IQPDSVALVGILGAIAGLSSLTKGKEIHGFLIR--GKFPVEGAV 603

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
            S +VD+Y+  G ++ A    +    K D ++  A++ A     +   +  + + +LE
Sbjct: 604 VSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLE 660



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 211/443 (47%), Gaps = 63/443 (14%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDD--HVSHSLITMYARCGKLDSA 173
           P    Y +V    A   A++ G  +H+     G L +DD   ++  L+ MY +CG+L  A
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL----PDEITLVSVLGS 229
            ++FD +  R + SWN++I      G A EAV ++  MR  E +    PD  TL SVL +
Sbjct: 113 HRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKA 172

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN-KDVVT 288
           CG  GD   G  V G  VK+ +D +  + +AL+ MY KCG L  A RVF+ M + +DV +
Sbjct: 173 CGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVAS 232

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN+ I+   QNG+  EA+ LF RM+  G + +  T +GVL  CA +  L+ G+ +     
Sbjct: 233 WNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 349 QRGLRHDI----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           + G   +I           CG +D AL+VF ++   + +SWN+M+S    N    EA+  
Sbjct: 293 KCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDF 352

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR------------------------- 433
           F  M + G    P+    + +LSA  H G +  GR                         
Sbjct: 353 FGEMVQNG--FNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMY 410

Query: 434 ----------RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA---WDFVERMPEKVD 480
                     R+FD M      I     ++ ++  YA++   SEA   +   ++   KVD
Sbjct: 411 IKCYSVECSARVFDRMR-----IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVD 465

Query: 481 EIVLGALLGACQKQKNTDVSQRV 503
            +++G++L AC   K+  + ++V
Sbjct: 466 PMMMGSILEACSGLKSISLLKQV 488


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 189/552 (34%), Positives = 295/552 (53%), Gaps = 34/552 (6%)

Query: 34  CPSTKTVQQIHTQMLINFIQKPNFLLIRII----------DLKDFNYASLLFHQISRPNE 83
           C S+K ++Q   Q+L   I +   L   II            +D   A   F ++ +   
Sbjct: 68  CSSSKDLKQ--GQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQM---KRLGLKPDNFTYPFVFISCANLLALNHGVS 140
             +N +I G +     +  +LK+Y  M      G+KPD  T+     +C  +  ++ G  
Sbjct: 126 VTWNALIAGYSRNGD-HRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           + +     G   D  V ++LI MY++CG L+SARKVFD ++ RD+++WN+MISGY+K G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A +A+ELF RM   +  P+ +T + +L +C +L DL  G+ +   V ++  + +  +G+ 
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 261 LIDMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           L++MY KC  +L  AR+VF+ M  +DV+TWN +I AY Q G + +A+ +F +M+   V P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           ++ITL  VLSACA +GA   GK V    +    + D+            CGS+DD + VF
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             +   + VSW+ +I+A A +G +   L  F  + +EG AA  +DVT +  LSAC H G+
Sbjct: 425 AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAA--DDVTMVSTLSACSHGGM 482

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + EG + F  M    GL P   H+ CMVDL +RAG L  A + +  MP   D +   +LL
Sbjct: 483 LKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLL 542

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYV-ISSKIFANLKMWDDSAKMRALMREKGVS 547
             C+   +T  + RV   L E+ES +  + V + S ++A    WDD  K R     +   
Sbjct: 543 SGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAAR 599

Query: 548 KTPGCSWIGIDD 559
           K PGCS+I I+D
Sbjct: 600 KNPGCSYIEIND 611



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 214/384 (55%), Gaps = 19/384 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +FH I  PN  ++ +++         Y  +L  Y +M   GL+PD   +      C++  
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGH-YREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSK 72

Query: 134 ALNHGVSVHSSVFKIGLDEDDHV-SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            L  G  +H+ + +  L E D +   +LITMYARC  L+ ARK FDE+ ++ LV+WN++I
Sbjct: 73  DLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 193 SGYSKMGYAKEAVELFGRM---REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +GYS+ G  + A++++  M     E   PD IT  S L +C  +GD+  G+ +E   V +
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVAS 192

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               +  + +ALI+MY KCG+L  AR+VFD + N+DV+ WN MI+ YA+ G + +A+ LF
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG---------- 359
            RM      P+ +T IG+L+AC ++  L+ G+ + +   + G   D+  G          
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKC 312

Query: 360 --SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
             S+++A +VFE M   + ++WN +I A    G+A +AL +F++M  E  A  PN++T  
Sbjct: 313 SSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVA--PNEITLS 370

Query: 418 GVLSACVHAGLVDEGRRLFDLMSS 441
            VLSAC   G   +G+ +  L++S
Sbjct: 371 NVLSACAVLGAKRQGKAVHALIAS 394



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 157/288 (54%), Gaps = 17/288 (5%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG +  A  VF  I   + VSW  +++ +++ G+ +EA+  + RM  E   PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            V  +G C    DL  G+ +   +++ + ++ +  +G+ALI MY +C  L  AR+ FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRM---KYAGVNPDKITLIGVLSACASIGALD 338
             K +VTWNA+I  Y++NG    A+ ++  M      G+ PD IT    L AC  +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 339 LGKWVDK------YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ ++       YAS   +++ +      CGS++ A KVF+ +   + ++WN MIS  A
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
             G A +AL LF+RM       +PN VTFIG+L+AC +   +++GR +
Sbjct: 241 KQGAATQALELFQRMGPND--PKPNVVTFIGLLTACTNLEDLEQGRAI 286



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 15/244 (6%)

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MYGKCG++  A  VF A+ + + V+W  ++ A+A+NG   EA+  + RM   G+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 324 LIGVLSACASIGALDLGKWVDKYA-SQRGLRHDIF-----------CGSIDDALKVFEDM 371
            +  +  C+S   L  G+ +       R L  DI            C  ++ A K F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERM-SKEGGAARPNDVTFIGVLSACVHAGLVD 430
                V+WNA+I+  + NG    AL +++ M SK     +P+ +TF   L AC   G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +GR + +  + + G    S   + ++++Y++ G L  A    +R+  + D I    ++  
Sbjct: 181 QGREI-EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISG 238

Query: 491 CQKQ 494
             KQ
Sbjct: 239 YAKQ 242


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 297/555 (53%), Gaps = 32/555 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISR 80
           E+ L  L KC +   V+Q+H Q++   + +   +  ++I      +  N A  +F+Q+  
Sbjct: 20  EERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQE 79

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN +  N +IR      Q Y  +  ++ +M+R GL  DNFTYPF+  +C+    L     
Sbjct: 80  PNVHLCNSLIRAHAQNSQPY-QAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKM 138

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLD--SARKVFDEIRERDLVSWNSMISGYSKM 198
           +H+ + K+GL  D +V ++LI  Y+RCG L    A K+F+++ ERD VSWNSM+ G  K 
Sbjct: 139 MHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKA 198

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYM 257
           G  ++A  LF  M + + +    T++     C ++         + F +  KM + N   
Sbjct: 199 GELRDARRLFDEMPQRDLISWN-TMLDGYARCREMS--------KAFELFEKMPERNTVS 249

Query: 258 GSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            S ++  Y K G +  AR +FD M    K+VVTW  +I  YA+ GL  EA  L ++M  +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           G+  D   +I +L+AC   G L LG  +     +  L  + +           CG++  A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF D+P  + VSWN M+  L  +G   EA+ LF RM +EG   RP+ VTFI VL +C 
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG--IRPDKVTFIAVLCSCN 427

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGL+DEG   F  M   + L+P+ EHY C+VDL  R G L EA   V+ MP + + ++ 
Sbjct: 428 HAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIW 487

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           GALLGAC+     D+++ V+  L++++  + GNY + S I+A  + W+  A +R+ M+  
Sbjct: 488 GALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSM 547

Query: 545 GVSKTPGCSWIGIDD 559
           GV K  G S + ++D
Sbjct: 548 GVEKPSGASSVELED 562


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/474 (36%), Positives = 262/474 (55%), Gaps = 51/474 (10%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           +L H   VH+++ ++GLDED ++ + ++      G  + + ++F + +E ++  +N+MI 
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G       +E++E++  MR+E   PD  T   +L +C  L D  LG  + G VVK   + 
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141

Query: 254 NFYMGSALIDMYGKCGAL---------VPARRV--------------------------- 277
           + ++ ++L+ +YGKCG +         +P + V                           
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201

Query: 278 --FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
             FD M+ KD+V+W++MI  YA NGL  EA+ LF +M   G  PD   ++GVL ACA +G
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261

Query: 336 ALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           AL+LG W      +              D++  CG +D A +VF  M   + V WNA IS
Sbjct: 262 ALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAIS 321

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
            LA +G    A  LF +M K G    P+  TF+G+L AC HAGLVDEGR+ F+ M   F 
Sbjct: 322 GLAMSGHVKAAFGLFGQMEKSG--IEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFT 379

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           L P+ EHY CMVDL  RAG L EA   V+ MP + + IV GALLG C+  ++T + + V+
Sbjct: 380 LTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVL 439

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + L+ +E SNSGNYV+ S I++    W+D+AK+R++M E+G+ K PG SWI +D
Sbjct: 440 KQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVD 493



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/441 (32%), Positives = 223/441 (50%), Gaps = 60/441 (13%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNE 83
           + L +   S K ++ +H  +L   + + ++LL +++    +  + NY+  +FHQ   PN 
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNI 73

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           + FN MI GL      +  S+++Y+ M++ GL PD+FT+PF+  +CA LL    G+ +H 
Sbjct: 74  FLFNTMIHGLVLN-DSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHG 132

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR---------------------- 181
            V K G + D  V+ SL+++Y +CG +D+A KVFD+I                       
Sbjct: 133 LVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCRE 192

Query: 182 ----------------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
                           E+D+VSW+SMI GY+  G  KEA++LF +M  E F PD   +V 
Sbjct: 193 AIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVG 252

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           VL +C  LG L LG W    + +N+   N  +G+ALIDMY KCG +  A  VF  M  KD
Sbjct: 253 VLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKD 312

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW--- 342
           +V WNA I+  A +G    A  LF +M+ +G+ PD  T +G+L AC   G +D G+    
Sbjct: 313 IVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFN 372

Query: 343 -------VDKYASQRGLRHDIF--CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRA 392
                  +       G   D+    G +D+A ++ + MP+  N + W A++       R 
Sbjct: 373 SMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGC----RL 428

Query: 393 HEALLLFERMSKEGGAARPND 413
           H    L E + K+  A  P++
Sbjct: 429 HRDTQLVEGVLKQLIALEPSN 449


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 273/474 (57%), Gaps = 15/474 (3%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDN-FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
           Q ++  L   +++      P N + Y  +  SC +  AL  G  +H+ + ++G+  +  +
Sbjct: 36  QSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDL 95

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           +  L+  Y+ C  L +A  +FD+I + +L  WN +I  Y+  G  + A+ L+ +M E   
Sbjct: 96  ATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGL 155

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            PD  TL  VL +C  L  +  G+ +   V+++  + + ++G+AL+DMY KCG +V AR 
Sbjct: 156 KPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARH 215

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VFD +V++D V WN+M+ AYAQNG  +E++ L   M   GV P + TL+ V+S+ A I  
Sbjct: 216 VFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIAC 275

Query: 337 LDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L  G+ +  +  + G ++         D++  CGS+  A  +FE +     VSWNA+I+ 
Sbjct: 276 LPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITG 335

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G A EAL LFERM KE   A+P+ +TF+G L+AC    L+DEGR L++LM     +
Sbjct: 336 YAMHGLAVEALDLFERMMKE---AQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRI 392

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EHY+CMVDL    G L EA+D + +M    D  V GALL +C+   N ++++  ++
Sbjct: 393 NPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALE 452

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            L+E+E  +SGNYVI + ++A    W+  A++R LM +KG+ K   CSWI + +
Sbjct: 453 KLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKN 506



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 210/397 (52%), Gaps = 28/397 (7%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL+ C S K ++   Q+H ++    I     L  ++++          A  LF +I + 
Sbjct: 63  SLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKG 122

Query: 82  NEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           N + +NV+IR    AW   +  ++ LY+QM   GLKPDNFT PFV  +C+ L  +  G  
Sbjct: 123 NLFLWNVLIRAY--AWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V + G + D  V  +L+ MYA+CG +  AR VFD+I +RD V WNSM++ Y++ G+
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             E++ L   M  +   P E TLV+V+ S  D+  L  G+ + GF  ++    N  + +A
Sbjct: 241 PDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTA 300

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KCG++  A  +F+ +  K VV+WNA+IT YA +GL+ EA+ LF RM      PD
Sbjct: 301 LIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPD 359

Query: 321 KITLIGVLSACASIGALDLGK--------------WVDKYASQRGLRHDIFCGSIDDALK 366
            IT +G L+AC+    LD G+               V+ Y     L     CG +D+A  
Sbjct: 360 HITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLG--HCGQLDEAYD 417

Query: 367 VFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           +   M V  +   W A++++   +G    A +  E++
Sbjct: 418 LIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKL 454


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 298/547 (54%), Gaps = 24/547 (4%)

Query: 30  LLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LK C   PS +   ++H+ +L+   Q   F+   ++D+      F+ A L+F Q+   +
Sbjct: 34  VLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSARLVFDQMPIKS 93

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N +I      +     S  +  QM+ LGL+  + T+     SC+    L  G+S+H
Sbjct: 94  LVSWNSIISAHCRDFH-IDQSFGILKQMQLLGLELSSATFTGFLASCS----LPQGLSIH 148

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K+GLD    +++S+++MY R  ++D A  VF  + ++ +VSW  ++ GY   G   
Sbjct: 149 GYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVA 208

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +   +F +MR +   PD I  V+++  C   G+L+L   V   ++K+  D    + + L+
Sbjct: 209 KVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLV 268

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KC  LV ARRVFDA+  K V  W +MI+ YAQ G  NEA+ LFN +      P+++
Sbjct: 269 AMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNEL 328

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           TL  VLSACA +G+L +G+ +++Y    GL  D+            CGSI  A  +FE +
Sbjct: 329 TLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERI 388

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  +   W+AMI+  A +G   EAL LF +M  E G  +P+ + +  VL AC H+GL+++
Sbjct: 389 PNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVG-IKPDAIVYTSVLLACSHSGLIED 447

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G + F  M   FG+ P  +HYSC+VDL  RAG++  A   ++ MP  V   V    L AC
Sbjct: 448 GLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPVLVQARVWAPFLSAC 507

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
               N ++ +   + L ++E  ++GN+V+ + ++ ++  W ++AK R+++  +G+ K PG
Sbjct: 508 YTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAKARSIINARGLVKEPG 567

Query: 552 CSWIGID 558
            S I ID
Sbjct: 568 WSQIEID 574



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 182/381 (47%), Gaps = 28/381 (7%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+    FT+PFV  +CA L +L     +HS +   G      V  +L+ +Y++C    SA
Sbjct: 23  GVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSA 82

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI---TLVSVLGSC 230
           R VFD++  + LVSWNS+IS + +  +  ++   FG +++ + L  E+   T    L SC
Sbjct: 83  RLVFDQMPIKSLVSWNSIISAHCRDFHIDQS---FGILKQMQLLGLELSSATFTGFLASC 139

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
                L  G  + G++ K  +DL+  + ++++ MY +   +  A  VF  +  K +V+W 
Sbjct: 140 ----SLPQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWT 195

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            ++  Y   G   +   +FN+M+   V PD I  + ++S C   G L L   V     + 
Sbjct: 196 IILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKS 255

Query: 351 GLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           G  H              C  +  A +VF+ +   +   W +MIS  A  G  +EAL LF
Sbjct: 256 GFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLF 315

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL--FDLMSSSFGLIPKSEHYSCMVD 457
             + +   A+RPN++T   VLSAC   G +  G  +  + L++   GL       + ++ 
Sbjct: 316 NMLLRT--ASRPNELTLATVLSACAEMGSLRMGEEIEQYILLN---GLGSDLRVQTSLIH 370

Query: 458 LYARAGHLSEAWDFVERMPEK 478
           ++ + G + +A    ER+P K
Sbjct: 371 MFCKCGSIKKAQALFERIPNK 391



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           +GV+  + T   VL ACA + +L+    +  +    G +  +F           C     
Sbjct: 22  SGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHS 81

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  VF+ MP+ + VSWN++ISA   +    ++  + ++M   G     +  TF G L++C
Sbjct: 82  ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLG--LELSSATFTGFLASC 139


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 316/589 (53%), Gaps = 47/589 (7%)

Query: 14  FTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL 73
           F    DP +    L+ +  +C       ++ +Q+    I   N +L     L   ++A  
Sbjct: 167 FDFWGDPDV-ETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 225

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            F  ++  +  ++N+MI  L+ +  +   +L L  +M R G++ D+ TY     +CA L 
Sbjct: 226 YFEDMAERDVVSWNMMIAALSQS-GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           +L  G  +H+ V +     D +V+ +LI +YA+CG    A++VF+ +++R+ VSW  +I 
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G  +     ++VELF +MR E    D+  L +++  C +  DL LG+ +    +K+  + 
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR 404

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ-----------NGLS 302
              + ++LI +Y KCG L  A  VF +M  +D+V+W +MITAY+Q           +G++
Sbjct: 405 AIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMA 464

Query: 303 NEAIMLFNRMKYA---------------------GVNPDKITLIGVLSACASIGALDLGK 341
               + +N M  A                      V PD +T + +   CA IGA  LG 
Sbjct: 465 TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGD 524

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  +  + GL  ++            CG I +A K+F+ +   + VSWNAMI+  + +G
Sbjct: 525 QIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 584

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              +A   F+ M  +G  A+P+ ++++ VLS C H+GLV EG+  FD+M+   G+ P  E
Sbjct: 585 MGKQAAKTFDDMLSKG--AKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 642

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           H+SCMVDL  RAGHL+EA D +++MP K    V GALL AC+   N ++++   + + E+
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 702

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +S +SG+Y++ +KI+++    DDSA++R LMR+KG+ K PG SW+ +++
Sbjct: 703 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVEN 751



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 217/494 (43%), Gaps = 59/494 (11%)

Query: 2   LLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR 61
           L  A+A    L    L     L+  LL     C +    ++    +L   I++PN +   
Sbjct: 20  LAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARR----LLRADIKEPNVITHN 75

Query: 62  II-----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           I+          + A  LF ++ R +  ++N ++ G   A +++   L+ +  M R G  
Sbjct: 76  IMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQA-RRFLDGLETFVSMHRSGDS 134

Query: 117 -PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            P+ FT+  V  SC  L        +    +K     D  V  +L+ M+ RCG +D A +
Sbjct: 135 LPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASR 194

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELF---------------------GRMREE 214
           +F +I    +   NSM++GY+K+     A+E F                     GR+RE 
Sbjct: 195 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 254

Query: 215 EFLP----------DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
             L           D  T  S L +C  L  L  GK +   V+++   ++ Y+ SALI++
Sbjct: 255 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG+   A+RVF+++ +++ V+W  +I    Q    ++++ LFN+M+   +  D+  L
Sbjct: 315 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 374

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
             ++S C +   L LG+ +     + G    I            CG + +A  VF  M  
Sbjct: 375 ATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 434

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + VSW +MI+A +  G   +A   F+      G A  N +T+  +L A +  G  ++G 
Sbjct: 435 RDIVSWTSMITAYSQIGNIIKAREFFD------GMATRNAITWNAMLGAYIQHGAEEDGL 488

Query: 434 RLFDLMSSSFGLIP 447
           +++  M S   + P
Sbjct: 489 KMYSAMLSQKDVTP 502



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 175/432 (40%), Gaps = 90/432 (20%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-EIRERDLV 186
           SC +  AL    ++H  +  +GL     + ++L+  Y  CG L  AR++   +I+E +++
Sbjct: 13  SCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVI 72

Query: 187 SWNSMISGYSKMGYAKEAVELFGRM--------------------------------REE 214
           + N M++GY+K G   +A ELF RM                                R  
Sbjct: 73  THNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSG 132

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           + LP+  T   V+ SCG LG   L   + G   K     +  + +AL+DM+ +CG +  A
Sbjct: 133 DSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFA 192

Query: 275 RRV-------------------------------FDAMVNKDVVTWNAMITAYAQNGLSN 303
            R+                               F+ M  +DVV+WN MI A +Q+G   
Sbjct: 193 SRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVR 252

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----------WVDKYASQRGL 352
           EA+ L   M   GV  D  T    L+ACA + +L  GK            +D Y +   +
Sbjct: 253 EALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALI 312

Query: 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGS  +A +VF  +   N VSW  +I          +++ LF +M  E  A   +
Sbjct: 313 ELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI--D 370

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVDLYARAGHLS 466
                 ++S C +   +  GR+L         L  KS H       + ++ LYA+ G L 
Sbjct: 371 QFALATLISGCFNRMDLCLGRQLHS-------LCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 467 EAWDFVERMPEK 478
            A      M E+
Sbjct: 424 NAEFVFSSMSER 435



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 136/324 (41%), Gaps = 82/324 (25%)

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            L   L SCG  G L   + + G +V   +    ++ + L+  Y  CGAL  ARR+  A 
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 282 VNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN---------------------- 318
           + + +V+T N M+  YA+ G  ++A  LF+RM    V                       
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 319 ----------PDKITLIGVLSACASIGALDLGK-----------WVDK------------ 345
                     P+  T   V+ +C ++G  +L             W D             
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 346 -----YASQ---RGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISAL 386
                +AS+   +  R  IFC +           ID A++ FEDM   + VSWN MI+AL
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           + +GR  EAL L   M ++G   R +  T+   L+AC     +  G++L   +  S   +
Sbjct: 246 SQSGRVREALGLVVEMHRKG--VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS---L 300

Query: 447 PKSEHY--SCMVDLYARAGHLSEA 468
           P+ + Y  S +++LYA+ G   EA
Sbjct: 301 PQIDPYVASALIELYAKCGSFKEA 324


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 296/514 (57%), Gaps = 17/514 (3%)

Query: 56   NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS-LKLYYQMKRLG 114
            N L+       + + A  LF ++   +  ++N MI G       +SHS L+ + QM  L 
Sbjct: 592  NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVM--NGFSHSALEFFVQMLILR 649

Query: 115  LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
            +  D  T      +CAN+ +L+ G ++H    K     +   +++L+ MY++CG L+ A 
Sbjct: 650  VGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAI 709

Query: 175  KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            + F+++ ++ +VSW S+I+ Y + G   +A+ LF  M  +   PD  ++ SVL +C    
Sbjct: 710  QAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGN 769

Query: 235  DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
             L  G+ V  ++ KN M L   + +AL+DMY KCG++  A  VF  +  KD+V+WN MI 
Sbjct: 770  SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 295  AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV------DKYAS 348
             Y++N L NEA+ LF  M+     PD IT+  +L AC S+ AL++G+ +      + Y+S
Sbjct: 830  GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSS 888

Query: 349  QRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            +  + + +      CGS+  A  +F+ +P  + ++W  MIS    +G  +EA+  F++M 
Sbjct: 889  ELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMR 948

Query: 404  KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
              G   +P+++TF  +L AC H+GL++EG   F+ M S   + PK EHY+CMVDL AR G
Sbjct: 949  IAG--IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTG 1006

Query: 464  HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            +LS+A++ +E MP K D  + GALL  C+   + +++++V + + E+E  N+G YV+ + 
Sbjct: 1007 NLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLAN 1066

Query: 524  IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            I+A  + W++  K+R  + ++G+ K+PGCSWI +
Sbjct: 1067 IYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEV 1100



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 250/486 (51%), Gaps = 33/486 (6%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDLKDFNYAS---------LLFH 76
           S+L+ C   K +Q+   +H+ +  N I     L  +++    F Y S         +  H
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV----FMYVSCGALREGRRIFDH 511

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            +S    + +N+M+         Y  S+ L+ +M++LG+  +++T+  +    A L  + 
Sbjct: 512 ILSDNKVFLWNLMMSEYAKIGD-YRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVG 570

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
               +H  V+K+G    + V +SLI  Y + G++DSA K+FDE+ +RD+VSWNSMISG  
Sbjct: 571 ECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCV 630

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
             G++  A+E F +M       D  TLV+ + +C ++G L LG+ + G  VK        
Sbjct: 631 MNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVM 690

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             + L+DMY KCG L  A + F+ M  K VV+W ++I AY + GL ++AI LF  M+  G
Sbjct: 691 FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG 750

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR---------HDIF--CGSIDDAL 365
           V+PD  ++  VL ACA   +LD G+ V  Y  +  +           D++  CGS+++A 
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAY 810

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VF  +PV + VSWN MI   + N   +EAL LF  M KE   +RP+ +T   +L AC  
Sbjct: 811 LVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKE---SRPDGITMACLLPACGS 867

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
              ++ GR +   +  + G   +    + ++D+Y + G L  A    + +PEK D I   
Sbjct: 868 LAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK-DLITWT 925

Query: 486 ALLGAC 491
            ++  C
Sbjct: 926 VMISGC 931



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 199/404 (49%), Gaps = 23/404 (5%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI- 180
           Y  +   CA    L  G  VHS +   G+  +  +   L+ MY  CG L   R++FD I 
Sbjct: 454 YSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHIL 513

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            +  +  WN M+S Y+K+G  +E++ LF +M++     +  T   +L     LG +   K
Sbjct: 514 SDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECK 573

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            + G V K        + ++LI  Y K G +  A ++FD + ++DVV+WN+MI+    NG
Sbjct: 574 RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            S+ A+  F +M    V  D  TL+  ++ACA++G+L LG+ +     +     ++    
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNN 693

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG+++DA++ FE M     VSW ++I+A    G   +A+ LF  M  +G   
Sbjct: 694 TLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG--V 751

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGL-IPKSEHYSCMVDLYARAGHLSE 467
            P+  +   VL AC     +D+GR + + +  ++  L +P S   + ++D+YA+ G + E
Sbjct: 752 SPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS---NALMDMYAKCGSMEE 808

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           A+    ++P K D +    ++G   K     +    ++L  E++
Sbjct: 809 AYLVFSQIPVK-DIVSWNTMIGGYSKNS---LPNEALKLFAEMQ 848


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 301/560 (53%), Gaps = 38/560 (6%)

Query: 28  LSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI------ 78
           ++ L+ C     +   +++HT +L N        +  +I++  ++  SL+ H +      
Sbjct: 33  IATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINM--YSKCSLIDHSLRVFNFP 90

Query: 79  --SRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
                N +A+N +I G L  A  +   +L LY QM+ LG+ PD FT+P V  +C +    
Sbjct: 91  THHNKNVFAYNALIAGFLANALPQ--RALALYNQMRHLGIAPDKFTFPCVIRACGDDDDG 148

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
                +H  +FK+GL+ D  V  +L+  Y +   +  A +VF+E+  RD+V WN+M++G+
Sbjct: 149 FVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGF 208

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           +++G  +EA+ +F RM     +P   T+  VL     +GD   G+ V GFV K   +   
Sbjct: 209 AQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGV 268

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            + +ALIDMYGKC  +  A  VF+ M   D+ +WN++++ + + G     + LF+RM  +
Sbjct: 269 VVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGS 328

Query: 316 G-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL----RHDIF------------- 357
             V PD +T+  VL AC  + AL  G+ +  Y    GL     HD+F             
Sbjct: 329 SRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMY 388

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG++ DA  VF +M   +  SWN MI+    +G   EAL +F RM +      PN+++
Sbjct: 389 AKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQ--AQMVPNEIS 446

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+G+LSAC HAG+V EG      M S +G+ P  EHY+C++D+  RAG L EA+D V  M
Sbjct: 447 FVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTM 506

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P K D +   +LL AC+   +TD+++     ++E+E  + GNYV+ S ++  +  +++  
Sbjct: 507 PFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVL 566

Query: 536 KMRALMREKGVSKTPGCSWI 555
           + R  M+++ V K PGCSWI
Sbjct: 567 EWRYTMKQQNVKKRPGCSWI 586


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 296/550 (53%), Gaps = 30/550 (5%)

Query: 34  CPSTKTVQQ--------IHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYA 85
           C S+K ++Q        + TQ+L   I     L+      +D   A   F ++ +     
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQM---KRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           +N +I G +     +  +LK+Y  M      G+KPD  T+     +C+ +  ++ G  + 
Sbjct: 128 WNALIAGYSRNGD-HRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIE 186

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +     G   D  V ++LI MY++CG L+SARKVFD ++ RD+++WN+MISGY+K G A 
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A+ELF RM   +  P+ +T + +L +C +L DL  G+ +   V ++  + +  +G+ L+
Sbjct: 247 QALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLL 306

Query: 263 DMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +MY KC  +L  AR+VF+ +  +DV+TWN +I AY Q G + +A+ +F +M+   V P++
Sbjct: 307 NMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNE 366

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           ITL  VLSACA +GA   GK V    +    + D+            CGS+DD + VF  
Sbjct: 367 ITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAA 426

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   + VSW+ +I+A A +G +   L  F  + +EG AA  +DVT +  LSAC H G++ 
Sbjct: 427 IRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAA--DDVTMVSTLSACSHGGMLK 484

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG + F  M    GL P   H+ CMVDL +RAG L  A + +  MP   D +   +LL  
Sbjct: 485 EGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYV-ISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           C+   +T  + RV   L E+ES +  + V + S ++A    WDD  K R     +   K 
Sbjct: 545 CKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRAARKN 601

Query: 550 PGCSWIGIDD 559
           PGCS+I I+D
Sbjct: 602 PGCSYIEIND 611



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 214/384 (55%), Gaps = 19/384 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +FH I  PN  ++ +++         Y  +L  Y +M   GL+PD   +      C++  
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGH-YREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSK 72

Query: 134 ALNHGVSVHSSVFKIGLDEDDHV-SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            L  G  +H+ + +  L E D +   +LITMYARC  L+ ARK FDE+ ++ LV+WN++I
Sbjct: 73  DLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 193 SGYSKMGYAKEAVELFGRM---REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +GYS+ G  + A++++  M     E   PD IT  S L +C  +GD+  G+ +E   V +
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVAS 192

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               +  + +ALI+MY KCG+L  AR+VFD + N+DV+ WN MI+ YA+ G + +A+ LF
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG---------- 359
            RM      P+ +T IG+L+AC ++  L+ G+ + +   + G   D+  G          
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKC 312

Query: 360 --SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
             S+++A +VFE +   + ++WN +I A    G+A +AL +F++M  E  A  PN++T  
Sbjct: 313 SSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVA--PNEITLS 370

Query: 418 GVLSACVHAGLVDEGRRLFDLMSS 441
            VLSAC   G   +G+ +  L++S
Sbjct: 371 NVLSACAVLGAKRQGKAVHALIAS 394



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 158/288 (54%), Gaps = 17/288 (5%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG +  A  VF  I   + VSW  +++ +++ G+ +EA+  + RM  E   PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            V  +G C    DL  G+ +   +++ + ++ +  +G+ALI MY +C  L  AR+ FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRM---KYAGVNPDKITLIGVLSACASIGALD 338
             K +VTWNA+I  Y++NG    A+ ++  M      G+ PD IT    L AC+ +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 339 LGKWVDK------YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ ++       YAS   +++ +      CGS++ A KVF+ +   + ++WN MIS  A
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
             G A +AL LF+RM       +PN VTFIG+L+AC +   +++GR +
Sbjct: 241 KQGAATQALELFQRMGPND--PKPNVVTFIGLLTACTNLEDLEQGRAI 286



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 15/244 (6%)

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MYGKCG++  A  VF A+ + + V+W  ++ A+A+NG   EA+  + RM   G+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 324 LIGVLSACASIGALDLGKWVDKYA-SQRGLRHDIF-----------CGSIDDALKVFEDM 371
            +  +  C+S   L  G+ +       + L  DI            C  ++ A K F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERM-SKEGGAARPNDVTFIGVLSACVHAGLVD 430
                V+WNA+I+  + NG    AL +++ M SK     +P+ +TF   L AC   G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +GR + +  + + G    S   + ++++Y++ G L  A    +R+  + D I    ++  
Sbjct: 181 QGREI-EARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISG 238

Query: 491 CQKQ 494
             KQ
Sbjct: 239 YAKQ 242


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/512 (35%), Positives = 280/512 (54%), Gaps = 61/512 (11%)

Query: 103 SLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           ++K++ +M   LG++PD  +   V  +CA++ A + G  VH    + GL ED  V ++++
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 273

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---- 217
            MYA+CG ++ A KVF+ ++ +D+VSWN+M++GYS++G   +A+ LF ++REE+      
Sbjct: 274 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 333

Query: 218 -------------------------------PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
                                          P+ +TLVS+L  C   G L+ GK      
Sbjct: 334 TWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHA 393

Query: 247 VKNKMDLN-------FYMGSALIDMYGKCGALVPARRVFDAMVNKD--VVTWNAMITAYA 297
           +K  ++L+         + +ALIDMY KC +   AR +FD +  KD  VVTW  +I   A
Sbjct: 394 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 453

Query: 298 QNGLSNEAIMLFNRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Q+G +NEA+ LF++M      V P+  T+   L ACA +GAL  G+ +  Y  +      
Sbjct: 454 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 513

Query: 356 IF------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           +              G +D A  VF++M   N VSW ++++    +GR  EAL +F  M 
Sbjct: 514 MLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQ 573

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K G    P+ VTF+ VL AC H+G+VD+G   F+ M+  FG++P +EHY+CMVDL +RAG
Sbjct: 574 KVGLV--PDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAG 631

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA + +  MP K    V  ALL AC+   N ++ +     LLE+ES N G+Y + S 
Sbjct: 632 RLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSN 691

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           I+AN + W D A++R LM+  G+ K PGCSW+
Sbjct: 692 IYANARCWKDVARIRYLMKNTGIKKRPGCSWV 723



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 257/517 (49%), Gaps = 73/517 (14%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFI-QKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF- 86
           +L  +C S  + + IH Q+L+  +   P  ++   +       A  +  ++   +   F 
Sbjct: 34  TLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFW 93

Query: 87  -NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
            N +IR  +         L+LY +M+RLG +PD++T+PFV  +C  + +   G SVH+ V
Sbjct: 94  WNQLIR-RSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVV 152

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAK 202
           F  G + +  V + L++MY RCG  ++AR+VFDE+RER   DLVSWNS+++ Y + G + 
Sbjct: 153 FASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSI 212

Query: 203 EAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            A+++F RM E+    PD ++LV+VL +C  +G    GK V G+ +++ +  + ++G+A+
Sbjct: 213 RAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAV 272

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT--------------------------- 294
           +DMY KCG +  A +VF+ M  KDVV+WNAM+T                           
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 332

Query: 295 --------AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
                    YAQ GL  EA+ +F +M+  G  P+ +TL+ +LS CA  G L  GK    +
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCH 392

Query: 347 ASQRGLRHD------------------IFCGSIDDALKVFEDMPVTNE--VSWNAMISAL 386
           A +  L  D                    C S   A  +F+ +P  +   V+W  +I   
Sbjct: 393 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 452

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR-----LFDLMSS 441
           A +G A+EAL LF +M +      PN  T    L AC   G +  GR+     L +   S
Sbjct: 453 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 512

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +   +      +C++D+Y+++G +  A    + M ++
Sbjct: 513 AMLFVA-----NCLIDMYSKSGDVDAARVVFDNMHQR 544


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/506 (36%), Positives = 282/506 (55%), Gaps = 18/506 (3%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N A ++F  +   +   +N MI GL    +++  ++K + +M+R  L P NFT      S
Sbjct: 441 NDACVVFRLMDNKDSVTWNSMITGLDQN-KQFLEAVKTFQEMRRTELYPSNFTMISALSS 499

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA+L  ++ G  +H    K+GLD D  VS++L+ +Y  CG +   +K F  + + D VSW
Sbjct: 500 CASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSW 559

Query: 189 NSMISGYSKMGYAK-EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           NS+I   +    +  EAVE F  M    + P+ +T +++L +   L    LGK +   V+
Sbjct: 560 NSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVL 619

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAI 306
           K  +  +  + +AL+  YGKCG +     +F  M ++ D V+WN+MI+ Y  N L  +A+
Sbjct: 620 KRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAM 679

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            +   M   G   D  T   VLSACA++  L+ G  V   + +  L  DI          
Sbjct: 680 DMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMY 739

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG ID A + FE MP  N  SWN+MIS  A +G   ++L LF +M  +G    P+ VT
Sbjct: 740 AKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQG--PLPDHVT 797

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+GVLSAC HAGLV+EG   FD MS  +GL P+ EH+SCMVDL  R G L++  DF+ +M
Sbjct: 798 FVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQM 857

Query: 476 PEKVDEIVLGALLGACQKQ--KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
           P K + ++   +LGAC +   +NT + +R  ++LLE+E +N+ NY++ S ++A+   WDD
Sbjct: 858 PVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDD 917

Query: 534 SAKMRALMREKGVSKTPGCSWIGIDD 559
            AK R  MR+  V K  GCSW+ + D
Sbjct: 918 VAKTRVAMRKAFVKKEAGCSWVTMKD 943



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 219/430 (50%), Gaps = 29/430 (6%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFIS 128
           YA  +F ++S  N  + N +I GL    ++   +++L+ +MK  + L P+  +Y  +  +
Sbjct: 337 YAKNIFQKMSYRNVVSLNGLIIGLVRQ-KRGEEAVELFMEMKDSVELNPN--SYMIILTA 393

Query: 129 CANLLALNHG----VSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
                 L +G      VH+ + + GL +    + + LI MYA+CG ++ A  VF  +  +
Sbjct: 394 FPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNK 453

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D V+WNSMI+G  +     EAV+ F  MR  E  P   T++S L SC  LG + +G+ + 
Sbjct: 454 DSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLH 513

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +K  +DL+  + +AL+ +YG+CG +   ++ F  M++ D V+WN++I A A +  S 
Sbjct: 514 CEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSM 573

Query: 304 -EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
            EA+  F  M  AG +P+++T I +L+A +S+   +LGK +     +R +  D       
Sbjct: 574 LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENAL 633

Query: 358 ------CGSIDDALKVFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                 CG +     +F  M    +EVSWN+MIS    N    +A+ +   M ++G   R
Sbjct: 634 LACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKG--QR 691

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEA 468
            +  TF  VLSAC     ++ G    ++   S     +S+    S +VD+YA+ G +  A
Sbjct: 692 LDGFTFATVLSACATVATLERG---MEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYA 748

Query: 469 WDFVERMPEK 478
             F E MP +
Sbjct: 749 SRFFEMMPAR 758



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 203/406 (50%), Gaps = 28/406 (6%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  +FK G   D  + ++LI +YAR G L S RKVFDE+  R+LVSW+ +ISGY++   
Sbjct: 95  LHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRM 154

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD--LVLGKWVEGFVVKNKMDLNFYMG 258
             EA ELF +M  + F+P+     SV+ +C + G+  L  G  + G + K +   +    
Sbjct: 155 PNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTAS 214

Query: 259 SALIDMYGKCGALVP-ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-- 315
           + LI MYG    +V  ARR FD++  +++V+ N+MI+ Y Q G +  A  +F+ M+    
Sbjct: 215 NVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVM 274

Query: 316 --GVNPDKITLIGVLSACASIG--ALDLGKWVDKYASQRGLRHDIF-----------CGS 360
             G+ P++ T   ++SA  S+    L L + +     + G  HD++            GS
Sbjct: 275 GDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGS 334

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I  A  +F+ M   N VS N +I  L    R  EA+ LF  M K+     PN  +++ +L
Sbjct: 335 IGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPN--SYMIIL 391

Query: 421 SACVHAGLVDEGRR----LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +A     +++ G+R    +   +  S  L  +    + ++++YA+ G +++A   V R+ 
Sbjct: 392 TAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDAC-VVFRLM 450

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           +  D +   +++    + K    + +  Q +   E   S   +IS+
Sbjct: 451 DNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISA 496



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 236/507 (46%), Gaps = 42/507 (8%)

Query: 18  NDPSLLREKLLSLLKK----CPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFN 69
           ++P    EK+ SL ++    C S K  +++H Q+  N      FL   +I++     D  
Sbjct: 67  HNPVQHDEKIESLAQRYRYSCGS-KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLG 125

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
               +F ++   N  +++ +I G T   +  + + +L+ +M   G  P+++ +  V  +C
Sbjct: 126 SGRKVFDEMPLRNLVSWSCLISGYTRN-RMPNEACELFRKMVSDGFMPNHYAFGSVIRAC 184

Query: 130 ANL--LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC-GKLDSARKVFDEIRERDLV 186
                  L  G+ +H  + K     D   S+ LI+MY    G +D AR+ FD I  R+LV
Sbjct: 185 QECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLV 244

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREE----EFLPDEITLVSVLGSCGDLGD--LVLGK 240
           S NSMIS Y + G A  A ++F  M++E       P+E T  S++ +   L +  LVL +
Sbjct: 245 SLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLE 304

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +   V K+    + Y+GSAL+  + K G++  A+ +F  M  ++VV+ N +I    +  
Sbjct: 305 QLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQK 364

Query: 301 LSNEAIMLFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQRGLRHD 355
              EA+ LF  MK    +NP+   +I  L+A      L+ GK     V  +  + GL + 
Sbjct: 365 RGEEAVELFMEMKDSVELNPNSYMII--LTAFPEFHVLENGKRKGSEVHAFLIRSGLLNA 422

Query: 356 IF------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
                         CG+I+DA  VF  M   + V+WN+MI+ L  N +  EA+  F+ M 
Sbjct: 423 QIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMR 482

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           +      P++ T I  LS+C   G +  G +L        GL       + ++ LY   G
Sbjct: 483 RT--ELYPSNFTMISALSSCASLGWISVGEQL-HCEGLKLGLDLDVSVSNALLALYGECG 539

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGA 490
           ++ E       M +  D +   +L+GA
Sbjct: 540 YVKECQKAFSLMLD-YDHVSWNSLIGA 565


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/550 (32%), Positives = 298/550 (54%), Gaps = 48/550 (8%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
           FIQ  N L+    +    ++   +F  +S  N  ++  +I G      +   ++ L+++M
Sbjct: 167 FIQ--NCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARG-DRPKEAVSLFFEM 223

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
              G++P + T   V  +CA L  L+ G  V + + ++GL  +  + ++L+ MY +CG +
Sbjct: 224 VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAI 283

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           D+A+++FDE  +R+LV +N+++S Y++ G A+EA+ +   M ++   PD +T++S + + 
Sbjct: 284 DAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISAS 343

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             L DL  GK   G+V++N ++    +G+ +IDMY KCG    A RVFD M NK VV+WN
Sbjct: 344 AQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWN 403

Query: 291 AMITAYAQNG-------------------------------LSNEAIMLFNRMKYAGVNP 319
           ++   + +NG                               L  +AI LF  M+  G+  
Sbjct: 404 SLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKA 463

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D++T++G+ SAC  +GA +L KWV  Y  + G+  D+            CG    A++VF
Sbjct: 464 DRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVF 523

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             M   +  +W A I  +A  G    A  LF +M  +G   +P+ V F+ VL+AC H G 
Sbjct: 524 NKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQG--VKPDVVLFVQVLTACSHGGQ 581

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G  +F LM    G+ P+ EHY CMVDL  RAG L EA+D ++ MP + +++V G+LL
Sbjct: 582 VEQGLHIFSLMEDH-GISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 640

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+  KN +++    + + E+    +G +V+ S I+A+   W D A++R  +REKGV K
Sbjct: 641 AACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRK 700

Query: 549 TPGCSWIGID 558
            PG S + ++
Sbjct: 701 VPGSSSVQVN 710



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/514 (30%), Positives = 258/514 (50%), Gaps = 58/514 (11%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYA 71
           DP      L   L+ C +   ++Q+H Q+  N + +    L ++++        +  +YA
Sbjct: 20  DPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYA 79

Query: 72  SL---LFHQISRPNEYAF--NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
                LF +  R ++  F  N +IRG ++A      ++ LY +M  LG+ P+++T+PFV 
Sbjct: 80  RKAFELFKEDVRSDDALFMLNSLIRGYSSAGLG-REAILLYVRMLVLGVTPNHYTFPFVL 138

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             C  + A   G+ VH SV K+GL+ED  + + LI  YA CG +D   KVF+ + ER++V
Sbjct: 139 SGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVV 198

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SW S+I GY++    KEAV LF  M E    P  +T+V V+ +C  L DL +G+ V  ++
Sbjct: 199 SWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI 258

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +  + LN  M +AL+DMY KCGA+  A+R+FD  V++++V +N +++ YA+ GL+ EA+
Sbjct: 259 GELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREAL 318

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL-------------- 352
            + + M   G  PD++T++  +SA A +  L  GK    Y  + GL              
Sbjct: 319 AILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMY 378

Query: 353 ----RHDIFC------------------------GSIDDALKVFEDMPVTNEVSWNAMIS 384
               + ++ C                        G ++ A +VF  +P  N V WN MIS
Sbjct: 379 MKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMIS 438

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
            L       +A+ LF  M  EG   + + VT +G+ SAC + G  +  + +   +  + G
Sbjct: 439 GLVQKSLFEDAIELFREMQGEG--IKADRVTMMGIASACGYLGAPELAKWVHTYIEKN-G 495

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +       + +VD++AR G    A     +M E+
Sbjct: 496 IPCDMRLNTALVDMFARCGDPQSAMQVFNKMTER 529


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 315/589 (53%), Gaps = 47/589 (7%)

Query: 14  FTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL 73
           F    DP +    L+ +  +C       ++ +Q+    I   N +L     L   ++A  
Sbjct: 167 FDFWGDPDV-ETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 225

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            F  ++  +  ++N+MI  L+ +  +   +L L  +M R G++ D+ TY     +CA L 
Sbjct: 226 YFEDMAERDVVSWNMMIAALSQS-GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLF 284

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           +L  G  +H+ V +     D +V+ +LI +YA+CG    A++VF+ +++R+ VSW  +I 
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G  +     ++VELF +MR E    D+  L +++  C +  DL LG+ +    +K+  + 
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR 404

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ-----------NGLS 302
              + ++LI +Y KCG L  A  VF +M  +D+V+W +MITAY+Q           +G+ 
Sbjct: 405 AIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMD 464

Query: 303 NEAIMLFNRMKYA---------------------GVNPDKITLIGVLSACASIGALDLGK 341
               + +N M  A                      V PD +T + +   CA IGA  LG 
Sbjct: 465 TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGD 524

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  +  + GL  ++            CG I +A K+F+ +   + VSWNAMI+  + +G
Sbjct: 525 QIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 584

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              +A   F+ M  +G  A+P+ ++++ VLS C H+GLV EG+  FD+M+   G+ P  E
Sbjct: 585 MGKQAAKTFDDMLSKG--AKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLE 642

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           H+SCMVDL  RAGHL+EA D +++MP K    V GALL AC+   N ++++   + + E+
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFEL 702

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +S +SG+Y++ +KI+++    DDSA++R LMR+KG+ K PG SW+ +++
Sbjct: 703 DSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVEN 751



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 216/494 (43%), Gaps = 59/494 (11%)

Query: 2   LLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR 61
           L  A+A    L    L     L+  LL     C +    ++    +L   I++PN +   
Sbjct: 20  LAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARR----LLRADIKEPNVITHN 75

Query: 62  II-----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           I+          + A  LF ++ R +  ++N ++ G   A +++   L+ +  M R G  
Sbjct: 76  IMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQA-RRFLDGLETFVSMHRSGDS 134

Query: 117 -PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            P+ FT+  V  SC  L        +    +K     D  V  +L+ M+ RCG +D A +
Sbjct: 135 LPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASR 194

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELF---------------------GRMREE 214
           +F +I    +   NSM++GY+K+     A+E F                     GR+RE 
Sbjct: 195 LFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREA 254

Query: 215 EFLP----------DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
             L           D  T  S L +C  L  L  GK +   V+++   ++ Y+ SALI++
Sbjct: 255 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 314

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG+   A+RVF+++ +++ V+W  +I    Q    ++++ LFN+M+   +  D+  L
Sbjct: 315 YAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFAL 374

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
             ++S C +   L LG+ +     + G    I            CG + +A  VF  M  
Sbjct: 375 ATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSE 434

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + VSW +MI+A +  G   +A   F+ M         N +T+  +L A +  G  ++G 
Sbjct: 435 RDIVSWTSMITAYSQIGNIIKAREFFDGMDTR------NAITWNAMLGAYIQHGAEEDGL 488

Query: 434 RLFDLMSSSFGLIP 447
           +++  M S   + P
Sbjct: 489 KMYSAMLSQKDVTP 502



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 175/432 (40%), Gaps = 90/432 (20%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-EIRERDLV 186
           SC +  AL    ++H  +  +GL     + ++L+  Y  CG L  AR++   +I+E +++
Sbjct: 13  SCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVI 72

Query: 187 SWNSMISGYSKMGYAKEAVELFGRM--------------------------------REE 214
           + N M++GY+K G   +A ELF RM                                R  
Sbjct: 73  THNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSG 132

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           + LP+  T   V+ SCG LG   L   + G   K     +  + +AL+DM+ +CG +  A
Sbjct: 133 DSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFA 192

Query: 275 RRV-------------------------------FDAMVNKDVVTWNAMITAYAQNGLSN 303
            R+                               F+ M  +DVV+WN MI A +Q+G   
Sbjct: 193 SRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVR 252

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----------WVDKYASQRGL 352
           EA+ L   M   GV  D  T    L+ACA + +L  GK            +D Y +   +
Sbjct: 253 EALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALI 312

Query: 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGS  +A +VF  +   N VSW  +I          +++ LF +M  E  A   +
Sbjct: 313 ELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI--D 370

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVDLYARAGHLS 466
                 ++S C +   +  GR+L         L  KS H       + ++ LYA+ G L 
Sbjct: 371 QFALATLISGCFNRMDLCLGRQLHS-------LCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 467 EAWDFVERMPEK 478
            A      M E+
Sbjct: 424 NAEFVFSSMSER 435



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 136/324 (41%), Gaps = 82/324 (25%)

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            L   L SCG  G L   + + G +V   +    ++ + L+  Y  CGAL  ARR+  A 
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 282 VNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN---------------------- 318
           + + +V+T N M+  YA+ G  ++A  LF+RM    V                       
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 319 ----------PDKITLIGVLSACASIGALDLGK-----------WVDK------------ 345
                     P+  T   V+ +C ++G  +L             W D             
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 346 -----YASQ---RGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISAL 386
                +AS+   +  R  IFC +           ID A++ FEDM   + VSWN MI+AL
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           + +GR  EAL L   M ++G   R +  T+   L+AC     +  G++L   +  S   +
Sbjct: 246 SQSGRVREALGLVVEMHRKG--VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS---L 300

Query: 447 PKSEHY--SCMVDLYARAGHLSEA 468
           P+ + Y  S +++LYA+ G   EA
Sbjct: 301 PQIDPYVASALIELYAKCGSFKEA 324


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 192/546 (35%), Positives = 298/546 (54%), Gaps = 43/546 (7%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISRPNE 83
           L +KC S + ++ +H Q++++ +      L ++I      D  D  YA  +F QI +PN+
Sbjct: 120 LCEKCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNK 179

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           + +N +IRG + +       L L+ +M   GL P+ FT PFV  +C    A    V VH 
Sbjct: 180 FMYNSLIRGYSNSDDPIDAVL-LFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHG 238

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K+G+     V ++LI +Y  CG +  ARK+FD+I ++ LVSWNSMI           
Sbjct: 239 LAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIE------ITGV 292

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            +++  R            L  +   CG+L            +     + N    +++I 
Sbjct: 293 KIDIIVRN----------ALXDMYAKCGNLHS-------AQAIFDRTQEKNVVSWTSMIS 335

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
            Y + G++  AR++FD M  K+VV+WN+MI+ Y + G   EA+ LFN+M+ + V PD+ T
Sbjct: 336 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEAT 395

Query: 324 LIGVLSACASIGALDLGKWVDKYA-SQRGLRH--------DIF--CGSIDDALKVFEDMP 372
           L+ +L+AC+ +G L +GK +  Y  S +G           D++  CG +  AL +F +MP
Sbjct: 396 LVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP 455

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             N VSWN +I ALA +G   EA+ LFE M  +G    P+++T  G+LSAC H+GLVD G
Sbjct: 456 GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADG--TLPDEITLTGLLSACSHSGLVDMG 513

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
              FD M   + +  + EHY+CMVDL  R G L EA + + RMP K D +V GALLGAC+
Sbjct: 514 LYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACR 573

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++ +++++ LLE+E  + G YV+ S I+   + W+D  K+R LM ++G+ K    
Sbjct: 574 IHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAI 633

Query: 553 SWIGID 558
           S I ID
Sbjct: 634 SSIEID 639


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 294/534 (55%), Gaps = 19/534 (3%)

Query: 43  IHTQMLINFIQKPNFLLIRIIDLK-DFNYASL---LFHQISRPNEYAFNVMIRGLTTAWQ 98
           +H   +++ +    F+   I+DL   F  A L   +F  +   +   +N MI G +    
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN-S 193

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
            +  S++++  M  +GL  D+ T   V  + A L     G+ +     K GL  D +V  
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            LI++Y++CGK    R +FD+I + DL+S+N+MISGY+     + AV LF  +       
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  TLV ++        L L + ++   +K  + L   + +AL  +Y +   +  AR++F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D    K + +WNAMI+ Y QNGL++ AI LF  M    ++P+ +T+  +LSACA +GAL 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALS 432

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           +GKWV        L  +++           CGSI +A ++F+ M   N V+WNAMI+   
Sbjct: 433 IGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYG 492

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   EAL LF  M + G    P  VTF+ +L AC H+GLV EG  +F  M++++G  P
Sbjct: 493 LHGHGKEALKLFYEMLQSG--IPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQP 550

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
            SEHY+CMVD+  RAG L+ A +F+ERMP +    V GALLGAC   KNT+++    + L
Sbjct: 551 MSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRL 610

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPK 561
            +++  N G YV+ S I++  + +  +A +R +++++ ++KTPGC+ I IDD +
Sbjct: 611 FQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQ 664



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 233/468 (49%), Gaps = 21/468 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQ----KPNFLLIRIIDLKDFNYASLLFHQISRPN 82
            L+LL    +   + QI  Q++++ I         L  +  DL    +   LF+++S+P+
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPD 76

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVSV 141
            + FNV+IRG +      S S+ LY  +++   L+PDNFTY F   + + L     GV +
Sbjct: 77  LFLFNVLIRGFSDNGLPKS-SIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+     G+  +  V  +++ +Y +  + + ARKVFD + ERD V WN+MISG+S+  Y 
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++++ +F  M +     D  TL +VL +  +L +  LG  ++    K  +  + Y+ + L
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I +Y KCG     R +FD +   D++++NAMI+ Y  N  +  A+ LF  +  +G   + 
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGL---------RHDIFC--GSIDDALKVFED 370
            TL+G++        L L + +   + + G+            ++C    +  A ++F++
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
            P  +  SWNAMIS    NG    A+ LF+ M  +     PN VT   +LSAC   G + 
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ---LSPNPVTVTSILSACAQLGALS 432

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            G+ +  L+ S   L       + +VD+YA+ G + EA    + M +K
Sbjct: 433 IGKWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 294/534 (55%), Gaps = 19/534 (3%)

Query: 43  IHTQMLINFIQKPNFLLIRIIDLK-DFNYASL---LFHQISRPNEYAFNVMIRGLTTAWQ 98
           +H   +++ +    F+   I+DL   F  A L   +F  +   +   +N MI G +    
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRN-S 193

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
            +  S++++  M  +GL  D+ T   V  + A L     G+ +     K GL  D +V  
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            LI++Y++CGK    R +FD+I + DL+S+N+MISGY+     + AV LF  +       
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +  TLV ++        L L + ++   +K  + L   + +AL  +Y +   +  AR++F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D    K + +WNAMI+ Y QNGL++ AI LF  M    ++P+ +T+  +LSACA +GAL 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALS 432

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           +GKWV        L  +++           CGSI +A ++F+ M   N V+WNAMI+   
Sbjct: 433 IGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYG 492

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   EAL LF  M + G    P  VTF+ +L AC H+GLV EG  +F  M++++G  P
Sbjct: 493 LHGHGKEALKLFYEMLQSG--IPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQP 550

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
            SEHY+CMVD+  RAG L+ A +F+ERMP +    V GALLGAC   KNT+++    + L
Sbjct: 551 MSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRL 610

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPK 561
            +++  N G YV+ S I++  + +  +A +R +++++ ++KTPGC+ I IDD +
Sbjct: 611 FQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQ 664



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 233/468 (49%), Gaps = 21/468 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQ----KPNFLLIRIIDLKDFNYASLLFHQISRPN 82
            L+LL    +   + QI  Q++++ I         L  +  DL    +   LF+++S+P+
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPD 76

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
            + FNV+IRG +      S S+ LY  + K+  L+PDNFTY F   + + L     GV +
Sbjct: 77  LFLFNVLIRGFSDNGLPKS-SIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+     G+  +  V  +++ +Y +  + + ARKVFD + ERD V WN+MISG+S+  Y 
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++++ +F  M +     D  TL +VL +  +L +  LG  ++    K  +  + Y+ + L
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I +Y KCG     R +FD +   D++++NAMI+ Y  N  +  A+ LF  +  +G   + 
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGL---------RHDIFC--GSIDDALKVFED 370
            TL+G++        L L + +   + + G+            ++C    +  A ++F++
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
            P  +  SWNAMIS    NG    A+ LF+ M  +     PN VT   +LSAC   G + 
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ---LSPNPVTVTSILSACAQLGALS 432

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            G+ +  L+ S   L       + +VD+YA+ G + EA    + M +K
Sbjct: 433 IGKWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 196/609 (32%), Positives = 303/609 (49%), Gaps = 103/609 (16%)

Query: 12  LAFTELNDP--SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----L 65
           LA  + + P   ++ +K +SLL+ C +   + QI  Q++ + ++  +++    I     L
Sbjct: 8   LAVNQTSKPLHRVVEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARL 67

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
                A  +F + ++PN   +N M RG   A   +   + L+ +M R G  P+ FT+P V
Sbjct: 68  GGIRRARRVFDKTAQPNGATWNAMFRGYAQA-NCHLDVVVLFARMHRAGASPNCFTFPMV 126

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA-------------------- 165
             SCA   A   G  VH  V K G   +  V  +LI MY+                    
Sbjct: 127 VKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDK 186

Query: 166 -------------RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
                         C  + SAR++FD   +RD+V WN ++SGY ++G    A ELF RM 
Sbjct: 187 NVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMP 246

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
           +     D ++  +VL      G+      VE FV                          
Sbjct: 247 DR----DVMSWNTVLSGYATNGE------VESFV-------------------------- 270

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-----------KYAGVNPDK 321
              ++F+ M  ++V +WN +I  Y +NGL  EA+  F RM               V P+ 
Sbjct: 271 ---KLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPND 327

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T++ VL+AC+ +G L++GKWV  YA   G + ++F           CG I+ AL VF+ 
Sbjct: 328 YTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDG 387

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           + V + ++WN +I+ LA +G   +AL LFERM + G   RP+ VTF+G+LSAC H GLV 
Sbjct: 388 LDVKDIITWNTIINGLAMHGHVADALSLFERMKRAG--ERPDGVTFVGILSACTHMGLVR 445

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G   F  M   + ++P+ EHY CMVDL  RAG + +A D V +MP + D ++  ALLGA
Sbjct: 446 NGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGA 505

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN ++++  +Q L+E+E +N GN+V+ S I+ +L    D A+++  MR+ G  K P
Sbjct: 506 CRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVP 565

Query: 551 GCSWIGIDD 559
           GCS IG +D
Sbjct: 566 GCSVIGCND 574


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 294/552 (53%), Gaps = 61/552 (11%)

Query: 30  LLKKCPSTKTVQQIHTQMLIN--FIQKPNFLLIRII---DLKDFNYASLLF--------H 76
           LL+ C S  T++ IH+ +      +  P+FL   II    L D + A  LF         
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHG 90

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
               PN +  N M+R    A + Y  ++ LY  M+R+G+  +NFTYPFV   CA+ L   
Sbjct: 91  HTQAPNSFLCNTMLRAYANAGRSYE-AIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  VH  V + G   D  V  +L+ MYA+CG++  A +VFD +  RD+V W +MI+ Y 
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +     +A+ LF +M+EE FL DEIT +SV  + G LGD              +M     
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD-------------GRM----- 251

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
                        A+  AR VFD M  ++ ++WN+M++ Y QNG   +A+ LFN+M+ + 
Sbjct: 252 -------------AISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE 298

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKY---------ASQRGLRHDIF--CGSIDDAL 365
            +P+ +T + ++SAC+ +G+  LG+ +  +          + R    D++  CG +D A+
Sbjct: 299 CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV 358

Query: 366 KVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           ++F +  +      SWN +IS    +G   EAL LF RM  EG    PND+TF  +LSAC
Sbjct: 359 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEG--VEPNDITFTSILSAC 416

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            HAGL+DEGR+ F  M +   + P+ +HY+CMVD+  RAG L+EA+  ++++P +  + V
Sbjct: 417 SHAGLIDEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV 475

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            GALL AC+   NT++ +     L ++E  ++G YV+ S I+A    W +   +R  M+ 
Sbjct: 476 WGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKS 535

Query: 544 KGVSKTPGCSWI 555
           +G+ K    S I
Sbjct: 536 RGLKKPAAFSVI 547


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/495 (34%), Positives = 277/495 (55%), Gaps = 14/495 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ +   N  ++N +I G   +  K   +L ++  +++ GL  D  +      +CA + 
Sbjct: 269 LFNSLPNHNLQSYNAIIVGYARS-DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIK 327

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G+ VH    K     +  V+++++ MY +CG L  A  VF+E+  RD VSWN++I+
Sbjct: 328 GDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIA 387

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            + + G  ++ + LF  M +    PDE T  SVL +C     L  G  +   ++K++M L
Sbjct: 388 AHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGL 447

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++G ALIDMY KCG +  A ++ D +  + VV+WNA+I+ ++    S EA   F++M 
Sbjct: 448 DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKML 507

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV+PD  T   +L  CA++  ++LGK +     ++ L+ D +           CG++ 
Sbjct: 508 EMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 567

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           D   +FE  P  + V+WNAM+   A +G   EAL +FE M  E    +PN  TF+ VL A
Sbjct: 568 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN--VKPNHATFLAVLRA 625

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GLV++G   F  M S++GL P+ EHYSC+VD+  R+G +S+A + +E MP + D +
Sbjct: 626 CGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAV 685

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +   LL  C+   N +V+++    +L++E  +S  YV+ S I+AN  MW++  K+R +MR
Sbjct: 686 IWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMR 745

Query: 543 EKGVSKTPGCSWIGI 557
             G+ K PGCSWI I
Sbjct: 746 FNGLKKEPGCSWIEI 760



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 181/338 (53%), Gaps = 14/338 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A L+F ++   +  ++N +I        +   +L L+  M + G++PD FTY  V  +CA
Sbjct: 367 ACLVFEEMVSRDAVSWNAIIAAHEQNGNE-EKTLSLFVWMLQSGMEPDEFTYGSVLKACA 425

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              ALN G+ +H+ + K  +  D  V  +LI MY++CG ++ A K+ D + E+ +VSWN+
Sbjct: 426 GWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNA 485

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISG+S    ++EA + F +M E    PD  T  ++L +C +L  + LGK +   ++K +
Sbjct: 486 IISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKE 545

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + Y+ S L+DMY KCG +   + +F+   N+D VTWNAM+  YAQ+GL  EA+ +F 
Sbjct: 546 LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFE 605

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--C 358
            M+   V P+  T + VL AC  +G ++ G       +  Y     L H     DI    
Sbjct: 606 YMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRS 665

Query: 359 GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEA 395
           G +  AL++ E MP   + V W  ++S    +G    A
Sbjct: 666 GQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVA 703



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 243/539 (45%), Gaps = 97/539 (17%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKP-----NFLLIRIIDLKDFNYASLLFHQISRP 81
           + ++C   K +   +Q H +M++    KP     N L+   I   D  +A  +F  + + 
Sbjct: 48  IFQECSDRKALCPGKQAHARMILTEF-KPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQR 106

Query: 82  NEYAFNVMI-----RGLTTAWQKYSHSL--------KLY-YQMKRLGLKPDNFTYPFVFI 127
           +  ++N M+     RG     QK   ++        +L+ ++M R+G   D  T+  V  
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLK 166

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR--------------------- 166
           SC++L     G+ +H    K+G D D     +L+ MYA+                     
Sbjct: 167 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKA 226

Query: 167 --------------------------------CGKL-DSARKVFDEIRERDLVSWNSMIS 193
                                           C  L D + ++F+ +   +L S+N++I 
Sbjct: 227 GVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIV 286

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++     EA+ +F  +++     DE++L     +C  +   + G  V G  +K+    
Sbjct: 287 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQS 346

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMYGKCGALV A  VF+ MV++D V+WNA+I A+ QNG   + + LF  M 
Sbjct: 347 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 406

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD+ T   VL ACA   AL+ G  +     +  +  D F           CG ++
Sbjct: 407 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMME 466

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A K+ + +     VSWNA+IS  +   ++ EA   F +M + G    P++ T+  +L  
Sbjct: 467 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG--VDPDNFTYATILDT 524

Query: 423 CVHAGLVDEGRRLF-DLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEK 478
           C +   V+ G+++   ++        +S+ Y  S +VD+Y++ G++ +     E+ P +
Sbjct: 525 CANLVTVELGKQIHAQIIKKEL----QSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR 579



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 203/471 (43%), Gaps = 86/471 (18%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  +F  C++  AL  G   H+ +          V++ LI MY +C  L  A KVFD +
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 181 RERDLVSWNSMISGYS---KMGYAKE-----------AVELFG-RMREEEFLPDEITLVS 225
            +RD VSWN+M+ GY+    +G A++            VELF  RM     + D  T   
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC----------------- 268
           VL SC  L D   G  + G  VK   D +   GSAL+DMY KC                 
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 269 -----GALVPARRVFDAMVNKDVV--------------------------------TWNA 291
                GAL             DVV                                ++NA
Sbjct: 224 QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           +I  YA++    EA+ +F  ++ +G+  D+++L G   ACA I     G  V   + +  
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL 343

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
            + +I            CG++ +A  VFE+M   + VSWNA+I+A   NG   + L LF 
Sbjct: 344 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFV 403

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLY 459
            M + G    P++ T+  VL AC     ++ G  + + ++ S  GL   S     ++D+Y
Sbjct: 404 WMLQSG--MEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGL--DSFVGIALIDMY 459

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           ++ G + +A    +R+ E+   +   A++     QK ++ +Q+    +LE+
Sbjct: 460 SKCGMMEKAEKLHDRLAEQT-VVSWNAIISGFSLQKQSEEAQKTFSKMLEM 509


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 276/516 (53%), Gaps = 51/516 (9%)

Query: 87  NVMIRGLTTAWQKYSHS--LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           N++IR L    ++ SH+  + +YY ++  GL  D+FTYPFV  +   L     G   H++
Sbjct: 15  NLLIRTLA---RRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAA 71

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K G   D + + SL+ MY   G+L++ARKVFDE+ +R +V WN M+  Y + G   EA
Sbjct: 72  TLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEA 131

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           V L   M      PD +TL++ L +C   GDL LG+ +  ++       +  + +AL+DM
Sbjct: 132 VALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYM-DGVTGFSLPVANALLDM 190

Query: 265 YGKCGAL---------VPARRV----------------------FDAMVNKDVVTWNAMI 293
           Y K G L         +P+R V                      F     KD++ W AMI
Sbjct: 191 YVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMI 250

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            AY Q+G   EA+ LF  M+   + PD+ T++ +L+ CA++GALD G+ + ++A  R ++
Sbjct: 251 NAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMK 310

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D             CG ++ +++VFE M   +  +W A+I  LA NG+A  AL LFE M
Sbjct: 311 LDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDM 370

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
             E   A+P+ VTFIGVLSAC H GLVDEGR+ F  M   + + P+ EHYSC+V+L  RA
Sbjct: 371 --ERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRA 428

Query: 463 GHLSEAWDFVERMPEKVDEIVL-GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           G L EA   ++ +P   D + L GAL+ AC+ Q N  +S+R+ + + +         ++ 
Sbjct: 429 GQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLM 488

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           S ++A    W+D  ++R+ M    V K  GCS I +
Sbjct: 489 SNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEV 524



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 133/271 (49%), Gaps = 13/271 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A LLFHQ +  +   +  MI         +  +L L+  M+   ++PD FT   +   CA
Sbjct: 231 ARLLFHQCTEKDLIMWTAMINAYVQ-HGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCA 289

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           NL AL+ G  +H       +  D  +  +LI MYA+CG ++ + +VF+ +  RD  +W +
Sbjct: 290 NLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTA 349

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-----WVEGF 245
           +I G +  G A  A+ELF  M   E  PD +T + VL +C   G +  G+       E +
Sbjct: 350 IICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVY 409

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVT-WNAMITAYAQNGLSN 303
            ++ +++   Y  S L+++ G+ G L  A ++  ++ +NKD +  + A+ITA    G   
Sbjct: 410 RIRPRVE--HY--SCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVK 465

Query: 304 EAIMLFNRMKYAGVN-PDKITLIGVLSACAS 333
            +  L  R+   G   PD   L+  + A AS
Sbjct: 466 MSERLTKRIGKQGYQIPDVNLLMSNVYATAS 496


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 281/509 (55%), Gaps = 14/509 (2%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           +  N A  +F ++   +  ++N ++ G +        +L++   M    LKP   T   V
Sbjct: 184 RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMA-RMALEMVKSMCEENLKPSFITIVSV 242

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             + + L  ++ G  +H    + G D   ++S +L+ MYA+CG L++AR++FD + ER++
Sbjct: 243 LPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNV 302

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWNSMI  Y +    KEA+ +F +M +E   P +++++  L +C DLGDL  G+++   
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            V+  +D N  + ++LI MY KC  +  A  +F  + ++ +V+WNAMI  +AQNG   +A
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           +  F++M+   V PD  T + V++A A +      KW+     +  L  ++F        
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG+I  A  +F+ M   +  +WNAMI     +G    AL LFE M K  G  +PN V
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK--GTIKPNGV 540

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ V+SAC H+GLV+ G + F +M  ++ +    +HY  MVDL  RAG L+EAWDF+ +
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP K    V GA+LGACQ  KN + +++  + L E+   + G +V+ + I+    MW+  
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKV 660

Query: 535 AKMRALMREKGVSKTPGCSWIGIDDPKQS 563
            ++R  M  +G+ KTPGCS + I +   S
Sbjct: 661 GQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 246/464 (53%), Gaps = 19/464 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
           LL++C S K ++QI   +  N + + +F   +++ L       + A+ +F  I       
Sbjct: 43  LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           ++ M++G          +L+ + +M+   ++P  + + ++   C +   L  G  +H  +
Sbjct: 103 YHTMLKGFAKV-SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K G   D      L  MYA+C +++ ARKVFD + ERDLVSWN++++GYS+ G A+ A+
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           E+   M EE   P  IT+VSVL +   L  + +GK + G+ +++  D    + +AL+DMY
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMY 281

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG+L  AR++FD M+ ++VV+WN+MI AY QN    EA+++F +M   GV P  ++++
Sbjct: 282 AKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVM 341

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
           G L ACA +G L+ G+++ K + + GL  ++            C  +D A  +F  +   
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
             VSWNAMI   A NGR  +AL  F +M       +P+  T++ V++A     +    + 
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSR--TVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +  ++  S  L       + +VD+YA+ G +  A    + M E+
Sbjct: 460 IHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 283/518 (54%), Gaps = 18/518 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-G 114
           N LL   +D  D   A  LF ++   +  A++VMI G    W++    L+++ +M  + G
Sbjct: 188 NSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQ-WEEPQVGLQMFRKMVLVPG 245

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           ++PD      V  +CA+   +  G  VH  V   G D D  V +SLI MY++C    SA 
Sbjct: 246 IEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAF 305

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           KVF+EI +R+ VSWNSM+SG+       EA  L   MR+E    DE+TLV++L  C    
Sbjct: 306 KVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFV 365

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
                K +   +++   + N  + SALID Y KC  +  A  VF  M  +DVV+W+ MI+
Sbjct: 366 HPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMIS 425

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A  G  +EAI ++  M    V P+ IT+I +L AC+    L   KW    A ++G   
Sbjct: 426 GFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFAS 485

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           ++            CG I  + + F+ + + N V+W+AMI+A   NG AHEAL LF  M 
Sbjct: 486 EVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMK 545

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G   +PN VT + VL+AC H GLV+EG  LF  M    GL P  EHYSCMVD+  RAG
Sbjct: 546 RHG--LKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAG 603

Query: 464 HLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            L  A + ++ MP+  K    + G+LL AC+    T++ +  +  +LE+E SNS  Y+++
Sbjct: 604 KLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVA 663

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++A   +WDD+A++R L +EKGV    G S + ID+
Sbjct: 664 SSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDN 701



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           ++S+LK C S++ V   + +H  ++        F+   +ID+    KD   A  +F++IS
Sbjct: 253 MVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEIS 312

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           + N  ++N M+ G     + YS +  L   M++  ++ D  T   +   C   +   H  
Sbjct: 313 QRNNVSWNSMLSGFVLN-ENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCK 371

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H  + + G + ++ V  +LI  YA+C  ++ A +VF  +R RD+VSW++MISG++  G
Sbjct: 372 SIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCG 431

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EA+ ++  M  +   P+ IT++++L +C    +L   KW  G  ++        +G+
Sbjct: 432 KPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGT 491

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           A++DMY KCG ++ +RR FD +  K++VTW+AMI AY  NGL++EA+ LF  MK  G+ P
Sbjct: 492 AVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKP 551

Query: 320 DKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKV 367
           + +T + VL+AC+  G ++ G       V +   + G  H     D+    G +D A++V
Sbjct: 552 NPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEV 611

Query: 368 FEDMP--VTNEVS-WNAMISA 385
            + MP  + N  S W +++SA
Sbjct: 612 IKAMPDNLKNGASIWGSLLSA 632



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 185/409 (45%), Gaps = 39/409 (9%)

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
           ++A  K+   +  Y+++K+ G++  + +     +   + L+  HG S+H+ + K G D  
Sbjct: 22  SSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSF 81

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
             + +S++  Y RCG  D A  VF+ +R  RD VSWN +I G+   G     +  F   R
Sbjct: 82  TSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNAR 141

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
              F P+  T+V V+ +C  LG    G  + G+++K+       + ++L+ MY     + 
Sbjct: 142 VAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADME 200

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSAC 331
            AR +FD M  KDV+ W+ MI  Y Q       + +F +M    G+ PD + ++ VL AC
Sbjct: 201 CARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKAC 260

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
           AS   +  G+ V      RG   D+F           C     A KVF ++   N VSWN
Sbjct: 261 ASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWN 320

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----------VHAGLV 429
           +M+S    N    EA  L   M KE      ++VT + +L  C           +H  ++
Sbjct: 321 SMLSGFVLNENYSEAQSLISSMRKE--RVETDEVTLVNILQICKYFVHPFHCKSIHCVMI 378

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             G    +L+             S ++D YA+   +  AW+   RM  +
Sbjct: 379 RRGSEANELV------------LSALIDAYAKCYLIEIAWEVFARMRRR 415


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 274/497 (55%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F+ +  P   ++N +I G     Q    +L ++  ++R  L  D  +      +C+ + 
Sbjct: 296 VFNTLPNPPRQSYNAIIVGYARQDQGLK-ALDIFQSLQRNNLGFDEISLSGALTACSVIK 354

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G+ +H    K GL  +  V+++++ MY +CG L  A  +F+E+  RD VSWN++I+
Sbjct: 355 RHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIA 414

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            + +     + + LF  M      PD+ T  SV+ +C     L  G  + G ++K+ M L
Sbjct: 415 AHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGL 474

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           ++++GSAL+DMYGKCG L+ A ++   +  K  V+WN++I+ ++    S  A   F++M 
Sbjct: 475 DWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQML 534

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             G+ PD  T   VL  CA++  ++LGK +     +  L  D++           CG++ 
Sbjct: 535 EMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQ 594

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           D+  +FE  P  + V+W+AMI A A++G   +A+ LFE M       +PN   FI VL A
Sbjct: 595 DSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLN--VKPNHTIFISVLRA 652

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H G VD+G   F  M S +GL P+ EHYSCMVDL  R+G ++EA   +E MP + D++
Sbjct: 653 CAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDV 712

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +   LL  C+ Q N +V+++    LL+++  +S  YV+ + ++A + MW + AKMR++M+
Sbjct: 713 IWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMK 772

Query: 543 EKGVSKTPGCSWIGIDD 559
              + K PGCSWI + D
Sbjct: 773 NCKLKKEPGCSWIEVRD 789



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 207/407 (50%), Gaps = 35/407 (8%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A L+F ++ R +  ++N +I       ++   +L L+  M R  ++PD+FTY  V  +CA
Sbjct: 394 ACLIFEEMERRDAVSWNAIIAAHEQN-EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              ALN+G  +H  + K G+  D  V  +L+ MY +CG L  A K+   + E+  VSWNS
Sbjct: 453 GQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNS 512

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISG+S    ++ A   F +M E   +PD  T  +VL  C ++  + LGK +   ++K +
Sbjct: 513 IISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQ 572

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + Y+ S L+DMY KCG +  +R +F+    +D VTW+AMI AYA +GL  +AI LF 
Sbjct: 573 LHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFE 632

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFE 369
            M+   V P+    I VL ACA +G +D G  +  K  S  GL         D  ++   
Sbjct: 633 EMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGL---------DPQME--- 680

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
                    ++ M+  L  +G+ +EAL L E M  E      +DV +  +LS C   G V
Sbjct: 681 --------HYSCMVDLLGRSGQVNEALKLIESMPFEA-----DDVIWRTLLSNCKMQGNV 727

Query: 430 DEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475
           +   + F+   S   L P+ S  Y  + ++YA  G     W  V +M
Sbjct: 728 EVAEKAFN---SLLQLDPQDSSAYVLLANVYAIVG----MWGEVAKM 767



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/532 (26%), Positives = 253/532 (47%), Gaps = 58/532 (10%)

Query: 30  LLKKCPSTKTV---QQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +L+KC + K +   +Q+HTQM++      I   N LL         NYA  +F ++ + +
Sbjct: 12  ILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRD 71

Query: 83  EYAFNVMIRGL--------------------TTAWQK----YSH------SLKLYYQMKR 112
             ++N +I G                       +W      Y H      S++++ +M+ 
Sbjct: 72  VISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRS 131

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           L +  D  T+  +  +C+ +     G+ VH    ++G + D     +L+ MY++C KLD 
Sbjct: 132 LKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDD 191

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A +VF E+ ER+LV W+++I+GY +     E ++LF  M +      + T  SV  SC  
Sbjct: 192 AFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG 251

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L    LG  + G  +K+    +  +G+A +DMY KC  +  A +VF+ + N    ++NA+
Sbjct: 252 LSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAI 311

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YA+     +A+ +F  ++   +  D+I+L G L+AC+ I     G  +   A + GL
Sbjct: 312 IVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGL 371

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +I            CG++ +A  +FE+M   + VSWNA+I+A   N    + L LF  
Sbjct: 372 GFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDL 458
           M +      P+D T+  V+ AC     ++ G  +   ++ S  GL    + +  S +VD+
Sbjct: 432 MLR--STMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGL----DWFVGSALVDM 485

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           Y + G L EA     R+ EK   +   +++     QK ++ +QR    +LE+
Sbjct: 486 YGKCGMLMEAEKIHARLEEKT-TVSWNSIISGFSSQKQSENAQRYFSQMLEM 536



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 215/438 (49%), Gaps = 20/438 (4%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K  + A  +F ++   N   ++ +I G      ++   LKL+  M ++G+     TY  V
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQN-DRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
           F SCA L A   G  +H    K     D  +  + + MYA+C ++  A KVF+ +     
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPR 305

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            S+N++I GY++     +A+++F  ++      DEI+L   L +C  +   + G  + G 
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGL 365

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            VK  +  N  + + ++DMYGKCGAL+ A  +F+ M  +D V+WNA+I A+ QN    + 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + LF  M  + + PD  T   V+ ACA   AL+ G  +     + G+  D F        
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDM 485

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG + +A K+   +     VSWN++IS  +   ++  A   F +M + G    P++ 
Sbjct: 486 YGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG--IIPDNY 543

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFV 472
           T+  VL  C +   ++ G+++    +    L   S+ Y  S +VD+Y++ G++ ++    
Sbjct: 544 TYATVLDVCANMATIELGKQIH---AQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 473 ERMPEKVDEIVLGALLGA 490
           E+ P++ D +   A++ A
Sbjct: 601 EKAPKR-DYVTWSAMICA 617



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 194/418 (46%), Gaps = 46/418 (11%)

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
            T+  +   C+NL ALN G  VH+ +   G     +V++ L+  Y +  K++ A KVFD 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 180 IRERDLVSWNSMISGYS---KMGYA----------------------------KEAVELF 208
           + +RD++SWN++I GY+    MG+A                            ++++E+F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            RMR  +   D  T   +L +C  + D  LG  V    ++   + +   GSAL+DMY KC
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
             L  A RVF  M  +++V W+A+I  Y QN    E + LF  M   G+   + T   V 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSID-----------DALKVFEDMPVTNEV 377
            +CA + A  LG  +  +A +    +D   G+             DA KVF  +P     
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           S+NA+I   A   +  +AL +F+ + +       ++++  G L+AC       EG +L  
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQRNNLGF--DEISLSGALTACSVIKRHLEGIQLHG 364

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           L +   GL       + ++D+Y + G L EA    E M E+ D +   A++ A ++ +
Sbjct: 365 L-AVKCGLGFNICVANTILDMYGKCGALMEACLIFEEM-ERRDAVSWNAIIAAHEQNE 420



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 132/318 (41%), Gaps = 61/318 (19%)

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           ++T   +L  C +L  L  GK V   ++        Y+ + L+  Y K   +  A +VFD
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 280 AMVNKDVVTWNAMITAYA-------------------------------QNGLSNEAIML 308
            M  +DV++WN +I  YA                                NG++ ++I +
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-------- 360
           F RM+   +  D  T   +L AC+ I    LG  V   A Q G  +D+  GS        
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              +DDA +VF +MP  N V W+A+I+    N R  E L LF+ M K G     +  T+ 
Sbjct: 186 CKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS--TYA 243

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDF 471
            V  +C        G   F L +   G   KS+        +  +D+YA+   + +AW  
Sbjct: 244 SVFRSCA-------GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKV 296

Query: 472 VERMP----EKVDEIVLG 485
              +P    +  + I++G
Sbjct: 297 FNTLPNPPRQSYNAIIVG 314


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/551 (34%), Positives = 299/551 (54%), Gaps = 23/551 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           S++K C     V   +Q+H Q++     + +   N L+   +     + AS +F+ I   
Sbjct: 170 SIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAK 229

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVS 140
           +  +++ +I G +    ++  +L    +M   G+  P+ + +     +C++LL  ++G  
Sbjct: 230 DLISWSSIIAGFSQLGFEFE-ALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 288

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K+ L  +     SL  MYARCG LDSAR+VF++I   D  SWN +I+G +  GY
Sbjct: 289 IHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGY 348

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A EAV +F  MR   F+PD I+L S+L +      L  G  +  F++K     +  + ++
Sbjct: 349 ADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNS 408

Query: 261 LIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           L+ MY  C  L     +F+   NK D V+WNA++TA  Q+    E + LF  M  +   P
Sbjct: 409 LLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEP 468

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D IT+  +L  C  I +L LG  V  Y+ + GL  + F           CGS+  A ++F
Sbjct: 469 DHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIF 528

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   + VSW+ +I   A +G   EAL+LF  M   G    PN VTF+GVL+AC H GL
Sbjct: 529 DSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSG--IEPNHVTFVGVLTACSHVGL 586

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+EG +L+ +M +  G+ P  EH SC+VDL ARAGHL+EA  F++ M  + D +V   LL
Sbjct: 587 VEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLL 646

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+ Q N D++Q+  + +L+I+  NS  +V+   + A+   W+D+A +R+ M++  V K
Sbjct: 647 SACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKK 706

Query: 549 TPGCSWIGIDD 559
            PG SWI ++D
Sbjct: 707 IPGQSWIDVED 717



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 198/403 (49%), Gaps = 15/403 (3%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  +  +C++  +L  G  +H  +       D  +++ +++MY +CG L  AR+VFD +
Sbjct: 66  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 125

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            ER+LVS+ S+I+GYS+ G   EA+ L+ +M + + +PD+    S++ +C   GD+VLGK
Sbjct: 126 PERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGK 185

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +   V+K +   +    +ALI MY +   +  A +VF  +  KD+++W+++I  ++Q G
Sbjct: 186 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLG 245

Query: 301 LSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
              EA+     M   GV +P++      L AC+S+   D G  +     +  L  +    
Sbjct: 246 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAG 305

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG +D A +VF  +   +  SWN +I+ LA NG A EA+ +F  M   G  
Sbjct: 306 CSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFI 365

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             P+ ++   +L A      + +G ++   +    G +      + ++ +Y     L   
Sbjct: 366 --PDAISLRSLLCAQTKPMALCQGMQIHSFIIKC-GFLADLSVCNSLLTMYTFCSDLYCC 422

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           ++  E    K D +   A+L AC + +      R+ +L+L  E
Sbjct: 423 FNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSE 465


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 304/560 (54%), Gaps = 28/560 (5%)

Query: 24  REKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           R   L+ L  C S K +    +IH  ++   +    FL+  +I++     D   A  +F 
Sbjct: 142 RVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFE 201

Query: 77  QISRPNEYA------FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           +I R NE        +NVMI G  +  +  S +L+L+ +M  LG+ PD+ T   V + C+
Sbjct: 202 RI-RDNELVGRNMAVWNVMILGYVSN-ECLSLALELFVEMLELGISPDSSTVVVVLVLCS 259

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            LL L  G  +H  +  +GLD+D  V  +L+ MY +CG  +++ ++F   +  +LV W S
Sbjct: 260 QLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGS 319

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           ++   ++ GY  EA+E F     +   PD + L++ L +C  L     G  + GF +K  
Sbjct: 320 VMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMG 379

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            D + ++G AL+D YGKCG +  A++VF  +  +D+V+WNA+I+ +AQN  ++EA+  F 
Sbjct: 380 FDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFR 439

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+   + P+ +T+  +LS C  +  + L K V  Y  +     +             CG
Sbjct: 440 DMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCG 499

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            I  +  VFE +PV NEV+WN+++     +GR  E    FE+M +     +P+  TF  +
Sbjct: 500 DIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKE--ANIKPDHGTFTSL 557

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LS+C H+G VD G + F+ M   + L P+ E Y+CMVDL  RAG+L++A+D +  MP   
Sbjct: 558 LSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSP 617

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D+ + G+LL +C+   NT +++ V   + E+++S+ G  V+ + ++ +    ++  ++R 
Sbjct: 618 DDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRT 677

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            +++ G+ K PGCSWI +D+
Sbjct: 678 DIKQMGLKKQPGCSWIEVDN 697



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 194/418 (46%), Gaps = 23/418 (5%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTY-PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           +  ++++Y      G   + F + P +  +   L  +N G  +H  + K G  +D  V +
Sbjct: 19  FEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKN 78

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE--EF 216
           SL+ MY +CG   +A  +F+ + ERD VSWN+MISG+ + G   +++ +F RM +E    
Sbjct: 79  SLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGS 138

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             + +  ++ L SC  +  L  G  + GF+VK  +D + ++ SALI+MY KCG +  A  
Sbjct: 139 YHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAEN 198

Query: 277 VFD-----AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
           VF+      +V +++  WN MI  Y  N   + A+ LF  M   G++PD  T++ VL  C
Sbjct: 199 VFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLC 258

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
           + +  L +GK +       GL  D+            CG  + +L++F+     N V W 
Sbjct: 259 SQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWG 318

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           +++   A NG  +EAL  F     + G   P+ V  +  L AC    L   G  +    +
Sbjct: 319 SVMLNCAQNGYPNEALEFFSEFMLDCGF--PDPVILLAALRACSFLSLKPRGMAIHGF-A 375

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
              G          +VD Y + G +  A      +  + D +   AL+    + K  D
Sbjct: 376 IKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTR-DLVSWNALISGFAQNKCAD 432


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 302/572 (52%), Gaps = 23/572 (4%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRII 63
           A +  +A +    P +LR    SLLK C +     T + +H Q+    I         + 
Sbjct: 43  ALAAFVAMSSAGAPPVLR-TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 64  DL----KDFNYASLLFHQISRPNEYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPD 118
           ++    +    A  +F ++   +  A+N ++ G       + +  + +  Q +  G +PD
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE-GERPD 160

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
           + T   V  +CAN  AL      H+   + GL+E  +V+ +++  Y +CG + +AR VFD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            +  ++ VSWN+MI GY++ G ++EA+ LF RM EE     ++++++ L +CG+LG L  
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G  V   +V+  +D N  + +ALI MY KC  +  A  VFD +  +  V+WNAMI   AQ
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG S +A+ LF RM+   V PD  TL+ V+ A A I      +W+  Y+ +  L  D++ 
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYV 400

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG ++ A  +F      + ++WNAMI     +G    A+ LFE M   G 
Sbjct: 401 LTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGI 460

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              PN+ TF+ VLSAC HAGLVDEGR  F  M   +GL P  EHY  MVDL  RAG L E
Sbjct: 461 V--PNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDE 518

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           AW F+++MP      V GA+LGAC+  KN ++++   Q + E+       +V+ + I+AN
Sbjct: 519 AWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYAN 578

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             MW D A++R  M + G+ KTPG S I + +
Sbjct: 579 ASMWKDVARVRTAMEKNGLQKTPGWSIIQLKN 610


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/456 (37%), Positives = 268/456 (58%), Gaps = 15/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L+P+   Y  +   C  L  L  G ++H+ +     ++D  + + ++ MYA+CG L+ A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            +FD++  +D+VSW  +ISGYS+ G A EA+ LF +M    F P+E TL S+L + G   
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGP 220

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
               G+ +  F +K   D+N ++GS+L+DMY +   +  A+ +F+++  K+VV+WNA+I 
Sbjct: 221 SDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIA 280

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+ G     + LF +M   G  P   T   VL ACAS G+L+ GKWV  +  + G + 
Sbjct: 281 GHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQP 339

Query: 355 ---------DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
                    D++   GSI DA KVF  +   + VSWN++IS  A +G   EAL LFE+M 
Sbjct: 340 IAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQML 399

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K     +PN++TF+ VL+AC H+GL+DEG+  F+LM     +  +  H+  +VDL  RAG
Sbjct: 400 K--AKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKH-KIEAQVAHHVTVVDLLGRAG 456

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L+EA  F+E MP K    V GALLGAC+  KN D+     + + E++  +SG +V+ S 
Sbjct: 457 RLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 516

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+     D+AK+R +M+E GV K P CSW+ I++
Sbjct: 517 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIEN 552



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 211/390 (54%), Gaps = 23/390 (5%)

Query: 17  LNDPSLLREKLL--SLLKKCPSTKTVQQ---IHTQMLINFIQKP----NFLLIRIIDLKD 67
           +N  SL  E+ L   +L KC   + ++Q   IH  +  +  +      NF+L        
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
              A  LF ++   +  ++ V+I G + + Q  S +L L+ +M  LG +P+ FT   +  
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQA-SEALALFPKMLHLGFQPNEFTLSSLLK 214

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +     + +HG  +H+   K G D + HV  SL+ MYAR   +  A+ +F+ +  +++VS
Sbjct: 215 ASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS 274

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN++I+G+++ G  +  + LF +M  + F P   T  SVL +C   G L  GKWV   V+
Sbjct: 275 WNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVI 333

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+      Y+G+ LIDMY K G++  A++VF  +V +D+V+WN++I+ YAQ+GL  EA+ 
Sbjct: 334 KSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQ 393

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQRGLRHDIF------ 357
           LF +M  A V P++IT + VL+AC+  G LD G++    + K+  +  + H +       
Sbjct: 394 LFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLG 453

Query: 358 -CGSIDDALKVFEDMPVTNEVS-WNAMISA 385
             G +++A K  E+MP+    + W A++ A
Sbjct: 454 RAGRLNEANKFIEEMPIKPTAAVWGALLGA 483


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/563 (32%), Positives = 296/563 (52%), Gaps = 55/563 (9%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF----------------- 68
           KL+S    C   K  +++   M    +   NF++     + DF                 
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 69  ---NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
                AS LF ++   +  ++N MI G  +        L +Y QM  LG+  D  T   V
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLT-ERGLGIYKQMMYLGIDVDLATIISV 257

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            + CAN   L+ G +VHS   K   +   + S++L+ MY++CG LD A +VF+++ ER++
Sbjct: 258 LVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 317

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW SMI+GY++ G++  A+ L  +M +E    D + + S+L +C   G L  GK V  +
Sbjct: 318 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           +  N M  N ++ +AL+DMY KCG++  A  VF  MV KD+++WN M+            
Sbjct: 378 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV------------ 425

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD---------- 355
                      + PD  T+  +L ACAS+ AL+ GK +  Y  + G   D          
Sbjct: 426 ---------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 356 -IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
            + CG +  A  +F+ +P  + VSW  MI+    +G  +EA+  F  M   G    P++V
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG--IEPDEV 534

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           +FI +L AC H+GL+++G R F +M + F + PK EHY+CMVDL +R G+LS+A+ F+E 
Sbjct: 535 SFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIET 594

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           +P   D  + GALL  C+   + +++++V + + E+E  N+G YV+ + I+A  +  ++ 
Sbjct: 595 LPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEV 654

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
            +MR  + +KG+ K PGCSWI I
Sbjct: 655 KRMREKIGKKGLRKNPGCSWIEI 677



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 182/420 (43%), Gaps = 86/420 (20%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  V   CA L +L  G  VHS +    +  D+ +   L++ YA CG L   R+VFD +
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE------------------------- 215
            ++++  WN M+S Y+K+G  KE++ LF  M E+                          
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 216 -----------------------FLPDEITLVS---VLGSCGDLGDLVLGKWVEGFVVKN 249
                                  +L  ++ L +   VL  C + G L LGK V    +K+
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +      + L+DMY KCG L  A RVF+ M  ++VV+W +MI  Y ++G S+ AI+L 
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M+  GV  D + +  +L ACA  G+LD GK V  Y     +  ++F           C
Sbjct: 341 QQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKC 400

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS++ A  VF  M V + +SWN M+                       G  +P+  T   
Sbjct: 401 GSMEGANSVFSTMVVKDIISWNTMV-----------------------GELKPDSRTMAC 437

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L AC     ++ G+ +   +  + G        + +VDLY + G L  A    + +P K
Sbjct: 438 ILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 71/351 (20%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +  +  +N+ I  + ++G  + A+EL    ++ E   +  T  SVL  C  L  L  GK 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELVCMCQKSEL--ETKTYGSVLQLCAGLKSLTDGKK 120

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
           V   +  N + ++  +G  L+  Y  CG L   RRVFD M                    
Sbjct: 121 VHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 282 -------------------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                                           ++DV++WN+MI+ Y  NGL+   + ++ 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M Y G++ D  T+I VL  CA+ G L LGK V   A +      I            CG
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG 300

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D AL+VFE M   N VSW +MI+    +G +  A++L ++M KEG   + + V    +
Sbjct: 301 DLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG--VKLDVVAITSI 358

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEA 468
           L AC  +G +D G+ + D + ++      S  + C  ++D+YA+ G +  A
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANN---MASNLFVCNALMDMYAKCGSMEGA 406


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/518 (36%), Positives = 282/518 (54%), Gaps = 18/518 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-G 114
           N LL   +D  D   A  LF ++   +  A++VMI G    W++    L+++ +M  + G
Sbjct: 188 NSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQ-WEEPQVGLQMFRKMVLVPG 245

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           ++PD      V  +CA+   +  G  VH  V   G D D  V +SLI MY++C    SA 
Sbjct: 246 IEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAF 305

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           KVF+EI +R+ VSWNSM+SG+       EA  L   MR+E    DE+TLV++L  C    
Sbjct: 306 KVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFV 365

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
                K +   +++   + N  + SALID Y KC  +  A  VF  M  +DVV+W+ MI+
Sbjct: 366 HPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMIS 425

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A  G  +EAI ++  M    V P+ IT+I +L AC+    L   KW    A ++G   
Sbjct: 426 GFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFAS 485

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           ++            CG I  + + F+ + + N V+W+AMI+A   NG AHEAL LF  M 
Sbjct: 486 EVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMK 545

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G   +PN VT + VL+AC H GLV+EG  LF  M    GL P  EHYSCMVD+  RAG
Sbjct: 546 RHG--LKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAG 603

Query: 464 HLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            L  A + ++ MP   K    + G+LL AC+    T++ +  +  +LE+E SNS  Y+++
Sbjct: 604 KLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVA 663

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++A   +WDD+A++R L +EKGV    G S + ID+
Sbjct: 664 SSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDN 701



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 207/381 (54%), Gaps = 23/381 (6%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           ++S+LK C S++ V   + +H  ++        F+   +ID+    KD   A  +F++IS
Sbjct: 253 MVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEIS 312

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           + N  ++N M+ G     + YS +  L   M++  ++ D  T   +   C   +   H  
Sbjct: 313 QRNNVSWNSMLSGFVLN-ENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCK 371

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H  + + G + ++ V  +LI  YA+C  ++ A +VF  +R RD+VSW++MISG++  G
Sbjct: 372 SIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCG 431

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EA+ ++  M  +   P+ IT++++L +C    +L   KW  G  ++        +G+
Sbjct: 432 KPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGT 491

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           A++DMY KCG ++ +RR FD +  K++VTW+AMI AY  NGL++EA+ LF  MK  G+ P
Sbjct: 492 AVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKP 551

Query: 320 DKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKV 367
           + +T + VL+AC+  G ++ G       V +   + G  H     D+    G +D A++V
Sbjct: 552 NPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEV 611

Query: 368 FEDMP--VTNEVS-WNAMISA 385
            + MP  + N  S W +++SA
Sbjct: 612 IKAMPHNLKNGASIWGSLLSA 632



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 185/409 (45%), Gaps = 39/409 (9%)

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
           ++A  K+   +  Y+++K+ G++  + +     +   + L+  HG S+H+ + K G D  
Sbjct: 22  SSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSF 81

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
             + +S++  Y RCG  D A  VF+ +R  RD VSWN +I G+   G     +  F   R
Sbjct: 82  TSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNAR 141

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
              F P+  T+V V+ +C  LG    G  + G+++K+       + ++L+ MY     + 
Sbjct: 142 VAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADME 200

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSAC 331
            AR +FD M  KDV+ W+ MI  Y Q       + +F +M    G+ PD + ++ VL AC
Sbjct: 201 CARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKAC 260

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
           AS   +  G+ V      RG   D+F           C     A KVF ++   N VSWN
Sbjct: 261 ASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWN 320

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----------VHAGLV 429
           +M+S    N    EA  L   M KE      ++VT + +L  C           +H  ++
Sbjct: 321 SMLSGFVLNENYSEAQSLISSMRKE--RVETDEVTLVNILQICKYFVHPFHCKSIHCVMI 378

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             G    +L+             S ++D YA+   +  AW+   RM  +
Sbjct: 379 RRGSEANELV------------LSALIDAYAKCYLIEIAWEVFARMRRR 415


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/512 (35%), Positives = 279/512 (54%), Gaps = 61/512 (11%)

Query: 103 SLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           ++K++ +M   LG++PD  +   V  +CA++ A + G  VH    + GL ED  V ++++
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 292

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---- 217
            MYA+CG ++ A KVF+ ++ +D+VSWN+M++GYS++G   +A+ LF ++REE+      
Sbjct: 293 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 352

Query: 218 -------------------------------PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
                                          P+ +TLVS+L  C   G L+ GK      
Sbjct: 353 TWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHA 412

Query: 247 VKNKMDLN-------FYMGSALIDMYGKCGALVPARRVFDAMVNKD--VVTWNAMITAYA 297
           +K  ++L+         + +ALIDMY KC +   AR +FD +  KD  VVTW  +I   A
Sbjct: 413 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 472

Query: 298 QNGLSNEAIMLFNRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Q+G +NEA+ LF++M      V P+  T+   L ACA +GAL  G+ +  Y  +      
Sbjct: 473 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 532

Query: 356 IF------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           +              G +D A  VF++M   N VSW ++++    +GR  EAL +F  M 
Sbjct: 533 MLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQ 592

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K      P+ VTF+ VL AC H+G+VD+G   F+ M+  FG++P +EHY+CMVDL +RAG
Sbjct: 593 KV--XLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAG 650

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA + +  MP K    V  ALL AC+   N ++ +     LLE+ES N G+Y + S 
Sbjct: 651 RLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSN 710

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           I+AN + W D A++R LM+  G+ K PGCSW+
Sbjct: 711 IYANARCWKDVARIRYLMKNTGIKKRPGCSWV 742



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 256/517 (49%), Gaps = 73/517 (14%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFI-QKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF- 86
           +L  +C S  + +  H Q+L+  +   P  ++   +       A  +  ++   +   F 
Sbjct: 53  TLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFW 112

Query: 87  -NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
            N +IR  +         L+LY +M+RLG +PD++T+PFV  +C  + +   G SVH+ V
Sbjct: 113 WNQLIR-RSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVV 171

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAK 202
           F  G + +  V + L++MY RCG  ++AR+VFDE+RER   DLVSWNS+++ Y + G + 
Sbjct: 172 FASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSI 231

Query: 203 EAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            A+++F RM E+    PD ++LV+VL +C  +G    GK V G+ +++ +  + ++G+A+
Sbjct: 232 RAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAV 291

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT--------------------------- 294
           +DMY KCG +  A +VF+ M  KDVV+WNAM+T                           
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 351

Query: 295 --------AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
                    YAQ GL  EA+ +F +M   G  P+ +TL+ +LS CAS G L  GK    +
Sbjct: 352 VTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCH 411

Query: 347 ASQRGLRHD------------------IFCGSIDDALKVFEDMPVTNE--VSWNAMISAL 386
           A +  L  D                    C S   A  +F+ +P  +   V+W  +I   
Sbjct: 412 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 471

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR-----LFDLMSS 441
           A +G A+EAL LF +M +      PN  T    L AC   G +  GR+     L +   S
Sbjct: 472 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 531

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +   +      +C++D+Y+++G +  A    + M ++
Sbjct: 532 AMLFVA-----NCLIDMYSKSGDVDAARVVFDNMHQR 563


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/459 (38%), Positives = 263/459 (57%), Gaps = 16/459 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L+PD   Y  +   C  L  L  G  VH+ +       D  + +S++ MYA+CG L+ AR
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVE---LFGRMREEEFLPDEITLVSVLGSCG 231
           +VFDE+  +D+V+W SMI+GYS+ GYA  A     LF  M  +   P+E  L S++  CG
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            LG  V GK + G   K     N ++GS+L+DMY +CG L  +R VFD + +K+ V+WNA
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           +I+ +A+ G   EA+ LF +M+  G    + T   +L + ++ G+L+ GKW+  +  + G
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326

Query: 352 -----------LRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
                      L      G+I DA KVF+ +   + VS N+M+   A +G   EA+ LFE
Sbjct: 327 KKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFE 386

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M        PND+TF+ VL+AC HAGL+DEG   F+LM   +GL PK  HY+ +VDL+ 
Sbjct: 387 EMML-WVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFG 444

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG L +A  F+E MP + +  + GALLGA +  KNT++     Q +LE++    G + +
Sbjct: 445 RAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTL 504

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            S I+A+   W D AK+R  M++ G+ K P CSW+ I++
Sbjct: 505 LSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIEN 543



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 206/393 (52%), Gaps = 24/393 (6%)

Query: 17  LNDPSLLREKLL--SLLKKCPSTKTVQQ---IHTQML----INFIQKPNFLLIRIIDLKD 67
           +N+ SL  ++ +   LLK+C     ++Q   +HT ++     N +   N +L        
Sbjct: 82  INNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGS 141

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS--LKLYYQMKRLGLKPDNFTYPFV 125
              A  +F ++   +   +  MI G +      S +  L L+ +M R GL+P+ F    +
Sbjct: 142 LEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSL 201

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              C  L +   G  +H   +K G  E+  V  SL+ MYARCG+L  +R VFDE+  ++ 
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNE 261

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWN++ISG+++ G  +EA+ LF +M+ E F   E T  ++L S    G L  GKW+   
Sbjct: 262 VSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAH 321

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++K+   L  Y+G+ L+ MY K G +  A++VFD +V  DVV+ N+M+  YAQ+GL  EA
Sbjct: 322 MMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEA 381

Query: 306 IMLFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQRGLRH-----D 355
           + LF  M  +  + P+ IT + VL+AC+  G LD G +    + KY  +  L H     D
Sbjct: 382 VELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVD 441

Query: 356 IF--CGSIDDALKVFEDMPV-TNEVSWNAMISA 385
           +F   G +D A    E+MP+  N   W A++ A
Sbjct: 442 LFGRAGLLDQAKSFIEEMPIEPNATIWGALLGA 474



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 18/206 (8%)

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           N  S   + + + +    + PD+     +L  C  +G L  GK V  +      R+D+  
Sbjct: 69  NPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVI 128

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE---ALLLFERMSK 404
                     CGS++ A +VF++M V + V+W +MI+  + +G A     AL+LF  M +
Sbjct: 129 KNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVR 188

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           +G   RPN+     ++  C   G   +G+++       +G        S +VD+YAR G 
Sbjct: 189 DG--LRPNEFALSSLVKCCGFLGSCVDGKQIHGC-CWKYGFQENVFVGSSLVDMYARCGE 245

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGA 490
           L E+    + +  K +E+   AL+  
Sbjct: 246 LRESRLVFDELESK-NEVSWNALISG 270


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/536 (34%), Positives = 290/536 (54%), Gaps = 51/536 (9%)

Query: 66  KDFNYASLLF-HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
           ++   A LLF H    PN Y FN MI G   + +K   +  +Y  M + G  PD  T+ +
Sbjct: 14  ENLELAILLFNHFTPYPNLYIFNTMILGFPFSNEK---AFTIYRSMLQNGTYPDRQTFLY 70

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           + +     +A    +  H+ VF + L +++++ +SLI  Y   G  + AR++FDE+ +R+
Sbjct: 71  L-LQTTKFVAEVKQIHCHALVFGL-LSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRN 128

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +VS+N+MI G++K+G     +ELF  MR     PD+ T++ +L  CG LG+  LGK V  
Sbjct: 129 VVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHA 188

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-------------------- 284
            + K+    N  + +AL+DMY KC  L  AR+VFD  + K                    
Sbjct: 189 QIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELEL 248

Query: 285 -----------DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
                      D+V+WN++I+ YAQNG       LF RM    V PDK+T++ ++SA A 
Sbjct: 249 ACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAE 308

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           +GALD G+W+   A +   + + F           CGSI+ A  +F  +P  +  +W  M
Sbjct: 309 MGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTM 368

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I+  AF+G  ++AL LF  M  E    +PNDVTF+ VL+AC H+GLVDEG ++F  M   
Sbjct: 369 ITGFAFHGFGNKALELFSVMQAE---TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKR 425

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           + + P  EHY C+VDL  R+G L +A   +E+MP +    + GA+L AC+  +N ++++R
Sbjct: 426 YSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAER 485

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            +  LL++E    G Y++ S ++A    W  S  +R +M  +GV K  GCS + +D
Sbjct: 486 ALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 541



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 219/442 (49%), Gaps = 64/442 (14%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLI-NFIQKP----NFLLIRIIDLKDFNYASLLFHQI 78
           R+  L LL+       V+QIH   L+   + K     N L+ R +D   F  A  LF ++
Sbjct: 65  RQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEM 124

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           S  N  ++N MI G           L+L++ M+  GL+PD+FT   + + C  L     G
Sbjct: 125 SDRNVVSYNTMILGFAKVGNILG-ILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG 183

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-------------------- 178
            SVH+ + K     +  + ++L+ MY +C +L  ARKVFD                    
Sbjct: 184 KSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKV 243

Query: 179 -----------EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
                      +I  RD+VSWNS+ISGY++ G       LF RM  E   PD++T+V+++
Sbjct: 244 GELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLI 303

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +  ++G L  G+W+ G  VK    +  + GSALIDMY KCG++  A  +F+ +  KDV 
Sbjct: 304 SAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVT 363

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV---- 343
           TW  MIT +A +G  N+A+ LF+ M+ A   P+ +T + VL+AC+  G +D G  +    
Sbjct: 364 TWTTMITGFAFHGFGNKALELFSVMQ-AETKPNDVTFVSVLAACSHSGLVDEGLKIFSSM 422

Query: 344 -DKYASQRGLRH-----DIFC--GSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHE 394
             +Y+ + G+ H     D+ C  G + DA+ V E MP+    S W A++SA     R H 
Sbjct: 423 KKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSAC----RMHR 478

Query: 395 ALLLFERM---------SKEGG 407
            + L ER           KEGG
Sbjct: 479 NMELAERALMELLKLEPEKEGG 500


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 304/552 (55%), Gaps = 27/552 (4%)

Query: 30  LLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C +    ++ + +H       +    F+   ++D+      F +A+ +F ++   +
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             A+N M+ G      KYS ++     M+     P+  T   +    A   AL+ G +VH
Sbjct: 195 VVAWNAMLAGYAL-HGKYSDTIACLLLMQD-DHAPNASTLVALLPLLAQHGALSQGRAVH 252

Query: 143 S-SVFKIGL-DEDDHV--SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           + SV    L D  D V    +L+ MYA+CG L  A +VF+ +  R+ V+W++++ G+   
Sbjct: 253 AYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLC 312

Query: 199 GYAKEAVELFGRMREEEF-LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G   EA  LF  M  +        ++ S L +C +L DL LGK +   + K+ +  +   
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G++L+ MY K G +  A  +FD MV KD V+++A+++ Y QNG ++EA  +F +M+   V
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALK 366
            PD  T++ ++ AC+ + AL  GK        RG+           D++  CG ID + +
Sbjct: 433 QPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQ 492

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F+ MP  + VSWN MI+    +G   EA  LF  M  +  A  P+DVTFI ++SAC H+
Sbjct: 493 IFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQ--ACEPDDVTFICLISACSHS 550

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV EG+R F +M+  +G+ P+ EHY  MVDL AR G L EA+ F++ MP K D  V GA
Sbjct: 551 GLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGA 610

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC+  KN D+ ++V  ++ ++    +GN+V+ S IF+    +D++A++R + +E+G 
Sbjct: 611 LLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGF 670

Query: 547 SKTPGCSWIGID 558
            K+PGCSWI I+
Sbjct: 671 KKSPGCSWIEIN 682



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 218/430 (50%), Gaps = 25/430 (5%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D + A  LF QI  P  + +N +IR  +      +  L    + +RL  +P+N+T+PFV 
Sbjct: 78  DLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLP-QPNNYTFPFVL 136

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +C+ LL L    +VH    + GL  D  VS +L+ +YA+C     A  VF  +  RD+V
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +WN+M++GY+  G   + +     M+++   P+  TLV++L      G L  G+ V  + 
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 247 VK----NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
           V+    +       +G+AL+DMY KCG LV A RVF+AM  ++ VTW+A++  +   G  
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRM 315

Query: 303 NEAIMLFNRMKYAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359
            EA  LF  M   G   ++P  +     L ACA++  L LGK +    ++ GL  D+  G
Sbjct: 316 LEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLHTDLTAG 373

Query: 360 S-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
           +           ID A  +F+ M V + VS++A++S    NG+A EA  +F +M  +   
Sbjct: 374 NSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKM--QACN 431

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +P+  T + ++ AC H   +  G+     +    G+  ++   + ++D+YA+ G +  +
Sbjct: 432 VQPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLS 490

Query: 469 WDFVERMPEK 478
               + MP +
Sbjct: 491 RQIFDVMPAR 500



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 162/355 (45%), Gaps = 21/355 (5%)

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
           CG L  AR +FD+I    +  +N++I  YS  G A          R     P+  T   V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +C  L DL   + V     +  +  + ++ +AL+D+Y KC +   A  VF  M  +DV
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           V WNAM+  YA +G  ++ I     M+     P+  TL+ +L   A  GAL  G+ V  Y
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 347 ASQRGLRHD---------------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           + +    HD                 CG +  A +VFE M V NEV+W+A++      GR
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 392 AHEALLLFERMSKEGGA-ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
             EA  LF+ M  +G     P  V     L AC +   +  G++L  L++ S GL     
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKS-GLHTDLT 371

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
             + ++ +YA+AG + +A    ++M  K D +   AL+    +    D + RV +
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQMVVK-DTVSYSALVSGYVQNGKADEAFRVFR 425



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 356 IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
           + CG +  A  +F+ +P      +NA+I A +  G A    L      +     +PN+ T
Sbjct: 74  MICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRR--LPQPNNYT 131

Query: 416 FIGVLSACVHAGLVD-EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           F  VL AC  + L+D    R     ++  GL       + +VD+YA+      A     R
Sbjct: 132 FPFVLKAC--SALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRR 189

Query: 475 MPEKVDEIVLGALLG 489
           MP + D +   A+L 
Sbjct: 190 MPAR-DVVAWNAMLA 203


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 200/583 (34%), Positives = 309/583 (53%), Gaps = 61/583 (10%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQK---PNFLLIRIIDLKDFNYASLLFHQI 78
           ++   LLSLL+ C S + + Q+H  + +  +     P F  +    L      +     +
Sbjct: 33  VVTHPLLSLLESCASFRRLLQLHALLTVTGLAGNGFPAFGFLAFCALSTPPRLAHAAAIL 92

Query: 79  SR----PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           +R    PN Y    M+RG   A +  + +L L+ ++ R  L  D  T+ F   + A    
Sbjct: 93  ARASPGPNAYMLGTMMRGFLRA-RLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAE 151

Query: 135 LNHGVS------VHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
             HG +      +H +  K G + E   V ++L+  YA    LD A KVFDE+ ERD+VS
Sbjct: 152 SEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVS 211

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           W +++ GY++ G A EA  LF RM     + P+ +TLV+ + + G +G L  G  +  +V
Sbjct: 212 WTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYV 271

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG------ 300
            +  +  +  + +AL+DM+GKCG +  AR VFD M  KDV +W +M+ AYA+ G      
Sbjct: 272 TEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAE 331

Query: 301 -------------------------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
                                       EA+ LF  M  AGV+P   TL+ VLSACA +G
Sbjct: 332 QLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLG 391

Query: 336 ALDLGKWV-DKY--ASQRGLRH-------DIF--CGSIDDALKVFEDMPVTNEVSWNAMI 383
            LDLG+W+ + Y  +++ GL         D+F  CG + +A K+F++M   N VSWN MI
Sbjct: 392 CLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMI 451

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
            A A +G++ EA+ LFE++  E     P+ +TF+G+L++C H+GLV EGRR F  M   +
Sbjct: 452 MAHAVHGQSEEAIRLFEQLKGEN--IVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFY 509

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
            + P+ EHY+CM+DL  + G L EA++    MP + DE   GALL AC+   N ++   V
Sbjct: 510 RIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACV 569

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
              L+E++ S+SG YV+ S+I+A+   WD    +R  MR++G 
Sbjct: 570 ADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGT 612


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 188/551 (34%), Positives = 295/551 (53%), Gaps = 23/551 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINF----IQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           S++K C     +   +Q+H  ++ ++    +   N L+    +     +AS +F +I   
Sbjct: 265 SVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTK 324

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVS 140
           +  ++  MI G      +   +L L+  + R G  +P+ F +  VF +C++LL L +G  
Sbjct: 325 DLISWGTMITGYIQLGYRVE-ALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQ 383

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH    K GL  +     SL  MYA+ G L SA+  F +I+  D+VSWN++I+ ++  G 
Sbjct: 384 VHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGD 443

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A EA++ F +M      PD IT +S+L +CG    L  G+ +  ++VK   D    + ++
Sbjct: 444 ANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNS 503

Query: 261 LIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           L+ MY KC  L  A  VF D   N ++V+WNA+++A  Q     E   L+  M ++G  P
Sbjct: 504 LLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKP 563

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D IT+  +L  CA + +L +G  V  Y+ + GL  D+            CGS+  A  VF
Sbjct: 564 DSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVF 623

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           +     + VSW+++I   A  G  HEAL LF  M+  G   +PN+VT++G LSAC H GL
Sbjct: 624 DSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLG--VQPNEVTYLGALSACSHIGL 681

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+EG RL+  M +  G+ P  EH+SC+VDL ARAG L EA  F+++     D      LL
Sbjct: 682 VEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLL 741

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+   N D+++R    +L+++ SNS   V+   I A+   W++ AK+R LM++ GV K
Sbjct: 742 AACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQK 801

Query: 549 TPGCSWIGIDD 559
            PG SWI + D
Sbjct: 802 VPGQSWIEVKD 812



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 206/397 (51%), Gaps = 15/397 (3%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  + ++CAN  +L++   +H  V K        + + +I MY +CG +  ARKVFD +
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           +  ++VSW SMISGYS+ G A +A+ ++ +M      PD++T  SV+ +C   GD+ LG+
Sbjct: 221 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGR 280

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +   V+K+    +    +ALI MY   G +  A  VF  +  KD+++W  MIT Y Q G
Sbjct: 281 QLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLG 340

Query: 301 LSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359
              EA+ LF  +   G   P++     V SAC+S+  L+ GK V     + GLR ++F G
Sbjct: 341 YRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAG 400

Query: 360 -SIDDALKVFEDMP--------VTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
            S+ D    F  +P        + N   VSWNA+I+A A NG A+EA+  F +M   G  
Sbjct: 401 CSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIG-- 458

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             P+ +T+I +L  C     +++GR++   +    G   +    + ++ +Y +  HL +A
Sbjct: 459 LTPDSITYISLLCTCGSPVRLNQGRQIHSYI-VKIGFDKEITVCNSLLTMYTKCSHLHDA 517

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            +    +    + +   A+L AC ++K    + R+ +
Sbjct: 518 LNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYK 554


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/623 (30%), Positives = 315/623 (50%), Gaps = 97/623 (15%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQI---SRP 81
           +  ++C + +  +Q+H+Q+++    +  FL  R+I +       ++A  +F  I   S  
Sbjct: 36  AFFQRCFTLQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLH 95

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +N +IR    +   + H+L+LY +M++LG  PD FT P V  +C++L +      V
Sbjct: 96  HLLLWNSIIRA-NVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIV 154

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    ++G     HV + L+ MY + G+++ AR++FD +  R +VSWN+M+SGY+    +
Sbjct: 155 HCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDS 214

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGS-------------------------------- 229
             A  +F RM  E   P+ +T  S+L S                                
Sbjct: 215 LGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVV 274

Query: 230 ---CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
              C D+ ++  GK + G+VVK   +   ++ +ALI  YGK   +  A +VF  + NK++
Sbjct: 275 LSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNL 334

Query: 287 VTWNAMITAYAQNGLSNEA----------------------------------------- 305
           V+WNA+I++YA++GL +EA                                         
Sbjct: 335 VSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKS 394

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + LF +M+ A V  + +T+  VLS CA + AL+LG+ +  YA +  +  +I         
Sbjct: 395 LELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINM 454

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG   +   VF+++   + +SWN++I     +G    AL  F  M +     +P+++
Sbjct: 455 YMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIR--ARMKPDNI 512

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ +LSAC HAGLV  GR LFD M + F + P  EHY+CMVDL  RAG L EA D V  
Sbjct: 513 TFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRN 572

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP + +E V GALL +C+  K+ D+ +     +L ++S  +G++++ S I+A    WDDS
Sbjct: 573 MPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDS 632

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
           A++R   R KG+ K PG SWI +
Sbjct: 633 ARVRVSARTKGLKKIPGQSWIEV 655


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 278/517 (53%), Gaps = 70/517 (13%)

Query: 103 SLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           +L L+++M  R  + PD  +   +  +CA+L A   G  VH    + GL +D  V ++++
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVV 406

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF----- 216
            MYA+CGK++ A KVF  ++ +D+VSWN+M++GYS+ G  + A+ LF RM EE       
Sbjct: 407 DMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVV 466

Query: 217 ------------------------------LPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
                                          P+ +TLVS+L +C  +G L+ GK    + 
Sbjct: 467 TWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYA 526

Query: 247 VKNKMDLN--------FYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAY 296
           +K  ++L+          + + LIDMY KC +   AR++FD++   ++DVVTW  MI  Y
Sbjct: 527 IKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGY 586

Query: 297 AQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           AQ+G +N A+ LF+ M      + P+  TL   L ACA + AL  G+ V  Y     LR+
Sbjct: 587 AQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYV----LRN 642

Query: 355 --------------DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
                         D++   G +D A  VF++MP  N VSW ++++    +GR  +AL +
Sbjct: 643 FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRV 702

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F+ M K      P+ +TF+ VL AC H+G+VD G   F+ MS  FG+ P  EHY+CMVDL
Sbjct: 703 FDEMRKV--PLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDL 760

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
           + RAG L EA   +  MP +   +V  ALL AC+   N ++ +     LLE+ES N G+Y
Sbjct: 761 WGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSY 820

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            + S I+AN + W D A++R  M+  G+ K PGCSWI
Sbjct: 821 TLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWI 857



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 167/544 (30%), Positives = 263/544 (48%), Gaps = 67/544 (12%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLREKLLSL--LKKCPSTKTVQQIHTQMLIN--FIQKPN 56
           MLLR       L  ++  +  LL    + +  LK+C S    + +H Q ++         
Sbjct: 136 MLLRCFPIKSKLLQSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGLLFHLAT 195

Query: 57  FLLIRIIDLKDFNYASLLFHQI--SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114
            L+   I      YA LL  ++  S  + + +N +IR              LY QMK LG
Sbjct: 196 NLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRD-VFTLYRQMKSLG 254

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
             PD++T+PFVF +CANL +L+ G S+H++V + G   +  V +++++MY +CG L  A 
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAH 314

Query: 175 KVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSC 230
            +FD++  R   DLVSWNS++S Y     A  A+ LF +M     + PD I+LV++L +C
Sbjct: 315 NMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPAC 374

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             L   + G+ V GF +++ +  + ++G+A++DMY KCG +  A +VF  M  KDVV+WN
Sbjct: 375 ASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWN 434

Query: 291 AMITAYAQNGLSNEAIMLFNRMK-----------------YA------------------ 315
           AM+T Y+Q G    A+ LF RM                  YA                  
Sbjct: 435 AMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDC 494

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-------------------I 356
           G  P+ +TL+ +LSAC S+GAL  GK    YA +  L  D                    
Sbjct: 495 GSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYA 554

Query: 357 FCGSIDDALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
            C S + A K+F+ +   +   V+W  MI   A +G A+ AL LF  M K   + +PND 
Sbjct: 555 KCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDF 614

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T    L AC     +  GR++   +  +F         +C++D+Y+++G +  A    + 
Sbjct: 615 TLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDN 674

Query: 475 MPEK 478
           MP++
Sbjct: 675 MPQR 678



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 113/205 (55%), Gaps = 15/205 (7%)

Query: 101 SHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVS 157
           +++L+L+  M ++   +KP++FT     ++CA L AL  G  VH+ V +         V+
Sbjct: 593 NNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVA 652

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           + LI MY++ G +D+A+ VFD + +R+ VSW S+++GY   G  ++A+ +F  MR+   +
Sbjct: 653 NCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLV 712

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG------SALIDMYGKCGAL 271
           PD IT + VL +C   G +       G    N+M  +F +       + ++D++G+ G L
Sbjct: 713 PDGITFLVVLYACSHSGMV-----DHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRL 767

Query: 272 VPARRVFDAM-VNKDVVTWNAMITA 295
             A ++ + M +    V W A+++A
Sbjct: 768 GEAMKLINEMPMEPTPVVWVALLSA 792


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 285/548 (52%), Gaps = 21/548 (3%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           ++  C  ++ ++   Q+H  ++     K  F    ++D+       + AS++F ++   +
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD 267

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N +I G       +  +++L  QMK  GL P+ FT   +  +C+   A + G  +H
Sbjct: 268 VVSWNALISGCVLNGHDH-RAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K   D DD++   L+ MYA+   LD ARKVFD +  RDL+  N++ISG S  G   
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ LF  +R+E    +  TL +VL S   L      + V    VK     + ++ + LI
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLI 446

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KC  L  A RVF+   + D++   +MITA +Q      AI LF  M   G+ PD  
Sbjct: 447 DSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            L  +L+ACAS+ A + GK V  +  +R    D F           CGSI+DA   F  +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 566

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P    VSW+AMI  LA +G    AL LF RM  EG    PN +T   VL AC HAGLVDE
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG--INPNHITMTSVLCACNHAGLVDE 624

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +R F+ M   FG+    EHYSCM+DL  RAG L +A + V  MP + +  + GALLGA 
Sbjct: 625 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  K+ ++ +   + L  +E   SG +V+ +  +A+  MW++ AK+R LM++  + K P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 552 CSWIGIDD 559
            SWI + D
Sbjct: 745 MSWIEVKD 752



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 254/533 (47%), Gaps = 58/533 (10%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQI-SRPNEY 84
           +LK  P  +   Q+H   +        F+   ++ +   F +   A  +F++  S  N  
Sbjct: 109 VLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAV 168

Query: 85  AFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++N    GL +A+ K      +++++ +M   G++P  F +  V  +C     +  G  V
Sbjct: 169 SWN----GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V ++G D+D   +++L+ MY + G++D A  +F+++ + D+VSWN++ISG    G+ 
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+EL  +M+    +P+  TL S+L +C   G   LG+ + GF++K   D + Y+G  L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K   L  AR+VFD M ++D++  NA+I+  +  G  +EA+ LF  ++  G+  ++
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL  VL + AS+ A    + V   A + G   D             C  + DA +VFE+
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + ++  +MI+AL+       A+ LF  M ++G    P+      +L+AC      +
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKG--LEPDPFVLSSLLNACASLSAYE 522

Query: 431 EGRRLF------DLMSSSF------------GLIPKSE------------HYSCMVDLYA 460
           +G+++         MS +F            G I  +E             +S M+   A
Sbjct: 523 QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLA 582

Query: 461 RAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           + GH   A +   RM ++    + I + ++L AC      D ++R    + E+
Sbjct: 583 QHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 184/379 (48%), Gaps = 21/379 (5%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNY----ASLLFHQIS 79
           L S+LK C         +QIH  M+       +++ + ++D+   N+    A  +F  + 
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +    N +I G +    ++  +L L+Y++++ GL  +  T   V  S A+L A +   
Sbjct: 366 HRDLILCNALISGCSHG-GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   KIG   D HV + LI  Y +C  L  A +VF+E    D+++  SMI+  S+  
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + + A++LF  M  +   PD   L S+L +C  L     GK V   ++K +   + + G+
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+  Y KCG++  A   F ++  + VV+W+AMI   AQ+G    A+ LF RM   G+NP
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 320 DKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIF--CGSIDDALKV 367
           + IT+  VL AC   G +D  K           +D+         D+    G +DDA+++
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMEL 664

Query: 368 FEDMPVTNEVS-WNAMISA 385
              MP     S W A++ A
Sbjct: 665 VNSMPFQANASIWGALLGA 683



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 189/397 (47%), Gaps = 28/397 (7%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +H+S+ K G        + LI+ Y++C +   AR+ FDEI +   VSW+S+++
Sbjct: 19  ALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVT 76

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            YS  G  + A++ F  MR E    +E  L  VL     + D  LG  V    +      
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGS 133

Query: 254 NFYMGSALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           + ++ +AL+ MYG  G +  ARRVF +A   ++ V+WN +++AY +N    +AI +F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
            ++G+ P +     V++AC     ++ G+ V     + G   D+F            G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           D A  +FE MP ++ VSWNA+IS    NG  H A+ L  +M   G    PN  T   +L 
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG--LVPNVFTLSSILK 311

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKV 479
           AC  AG  D GR++   M  +      S+ Y    +VD+YA+   L +A    + M  + 
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANA---DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHR- 367

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D I+  AL+  C      D     + L  E+     G
Sbjct: 368 DLILCNALISGCSHGGRHD---EALSLFYELRKEGLG 401


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 285/548 (52%), Gaps = 21/548 (3%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           ++  C  ++ ++   Q+H  ++     K  F    ++D+       + AS++F ++   +
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD 267

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N +I G       +  +++L  QMK  GL P+ FT   +  +C+   A + G  +H
Sbjct: 268 VVSWNALISGCVLNGHDH-RAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K   D DD++   L+ MYA+   LD ARKVFD +  RDL+  N++ISG S  G   
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHD 386

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ LF  +R+E    +  TL +VL S   L      + V    VK     + ++ + LI
Sbjct: 387 EALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLI 446

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KC  L  A RVF+   + D++   +MITA +Q      AI LF  M   G+ PD  
Sbjct: 447 DSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            L  +L+ACAS+ A + GK V  +  +R    D F           CGSI+DA   F  +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 566

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P    VSW+AMI  LA +G    AL LF RM  EG    PN +T   VL AC HAGLVDE
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG--INPNHITMTSVLCACNHAGLVDE 624

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +R F+ M   FG+    EHYSCM+DL  RAG L +A + V  MP + +  + GALLGA 
Sbjct: 625 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGAS 684

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  K+ ++ +   + L  +E   SG +V+ +  +A+  MW++ AK+R LM++  + K P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 552 CSWIGIDD 559
            SWI + D
Sbjct: 745 MSWIEVKD 752



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 254/533 (47%), Gaps = 58/533 (10%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQI-SRPNEY 84
           +LK  P  +   Q+H   +        F+   ++ +   F +   A  +F++  S  N  
Sbjct: 109 VLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAV 168

Query: 85  AFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++N    GL +A+ K      +++++ +M   G++P  F +  V  +C     +  G  V
Sbjct: 169 SWN----GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V ++G D+D   +++L+ MY + G++D A  +F+++ + D+VSWN++ISG    G+ 
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+EL  +M+    +P+  TL S+L +C   G   LG+ + GF++K   D + Y+G  L
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K   L  AR+VFD M ++D++  NA+I+  +  G  +EA+ LF  ++  G+  ++
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL  VL + AS+ A    + V   A + G   D             C  + DA +VFE+
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + ++  +MI+AL+       A+ LF  M ++G    P+      +L+AC      +
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKG--LEPDPFVLSSLLNACASLSAYE 522

Query: 431 EGRRLF------DLMSSSF------------GLIPKSE------------HYSCMVDLYA 460
           +G+++         MS +F            G I  +E             +S M+   A
Sbjct: 523 QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLA 582

Query: 461 RAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           + GH   A +   RM ++    + I + ++L AC      D ++R    + E+
Sbjct: 583 QHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 190/397 (47%), Gaps = 28/397 (7%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +H+S+ K G        + LI+ Y++C +   AR+VFDEI +   VSW+S+++
Sbjct: 19  ALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            YS  G  + A++ F  MR E    +E  L  VL     + D  LG  V    +      
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGS 133

Query: 254 NFYMGSALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           + ++ +AL+ MYG  G +  ARRVF +A   ++ V+WN +++AY +N    +AI +F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
            ++G+ P +     V++AC     ++ G+ V     + G   D+F            G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           D A  +FE MP ++ VSWNA+IS    NG  H A+ L  +M   G    PN  T   +L 
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG--LVPNVFTLSSILK 311

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKV 479
           AC  AG  D GR++   M  +      S+ Y    +VD+YA+   L +A    + M  + 
Sbjct: 312 ACSGAGAFDLGRQIHGFMIKANA---DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHR- 367

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D I+  AL+  C      D     + L  E+     G
Sbjct: 368 DLILCNALISGCSHGGRHD---EALSLFYELRKEGLG 401



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 184/379 (48%), Gaps = 21/379 (5%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNY----ASLLFHQIS 79
           L S+LK C         +QIH  M+       +++ + ++D+   N+    A  +F  + 
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +    N +I G +    ++  +L L+Y++++ GL  +  T   V  S A+L A +   
Sbjct: 366 HRDLILCNALISGCSHG-GRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   KIG   D HV + LI  Y +C  L  A +VF+E    D+++  SMI+  S+  
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + + A++LF  M  +   PD   L S+L +C  L     GK V   ++K +   + + G+
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+  Y KCG++  A   F ++  + VV+W+AMI   AQ+G    A+ LF RM   G+NP
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 320 DKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIF--CGSIDDALKV 367
           + IT+  VL AC   G +D  K           +D+         D+    G +DDA+++
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMEL 664

Query: 368 FEDMPVTNEVS-WNAMISA 385
              MP     S W A++ A
Sbjct: 665 VNSMPFQANASIWGALLGA 683


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 302/572 (52%), Gaps = 23/572 (4%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRII 63
           A +  +A +    P +LR    SLLK C +     T + +H Q+    I         + 
Sbjct: 43  ALAAFVAMSSAGAPPVLR-TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 64  DL----KDFNYASLLFHQISRPNEYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPD 118
           ++    +    A  +F ++   +  A+N ++ G       + +  + +  Q +  G +PD
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE-GERPD 160

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
           + T   V  +CAN  AL      H+   + GL+E  +V+ +++  Y +CG + +AR VFD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            +  ++ VSWN+MI GY++ G ++EA+ LF RM EE     ++++++ L +CG+LG L  
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G  V   +V+  +D N  + +ALI MY KC  +  A  VFD +  +  V+WNAMI   AQ
Sbjct: 281 GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQ 340

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG S +A+ LF RM+   V PD  TL+ V+ A A I      +W+  Y+ +  L  D++ 
Sbjct: 341 NGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYV 400

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG ++ A  +F      + ++WNAMI     +G    A+ LFE M   G 
Sbjct: 401 LTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGI 460

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              PN+ TF+ VLSAC HAGLVDEGR  F  M   +GL P  EHY  MVDL  RAG L E
Sbjct: 461 V--PNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDE 518

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           AW F+++MP      V GA+LGAC+  KN ++++   Q + E+       +V+ + I+AN
Sbjct: 519 AWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYAN 578

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             MW D A++R  M + G+ KTPG S I + +
Sbjct: 579 ASMWKDVARVRTAMEKNGLQKTPGWSIIQLKN 610


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/526 (32%), Positives = 291/526 (55%), Gaps = 20/526 (3%)

Query: 48  LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY 107
           LIN +   + L+   + +        +F ++++ N  ++  +I GL  A   Y+    LY
Sbjct: 188 LINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHA--GYNMEALLY 245

Query: 108 YQ---MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           +    + ++G   D+ T+     + A+   L+HG ++H+   K G DE   V ++L TMY
Sbjct: 246 FSEMWISKVGY--DSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMY 303

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
            +CGK D   ++F++++  D+VSW ++I+ Y + G  + AVE F RMR+    P++ T  
Sbjct: 304 NKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFA 363

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           +V+ +C +L     G+ + G V++  +     + ++++ +Y K G L  A  VF  +  K
Sbjct: 364 AVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRK 423

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D+++W+ +I  Y+Q G + EA    + M+  G  P++  L  VLS C S+  L+ GK V 
Sbjct: 424 DIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVH 483

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            +    G+ H+             CGS+++A K+F  M + N +SW AMI+  A +G + 
Sbjct: 484 AHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQ 543

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           EA+ LFE++S  G   +P+ VTFIGVL+AC HAG+VD G   F LM++ + + P  EHY 
Sbjct: 544 EAINLFEKISSVG--LKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYG 601

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           C++DL  RAG LSEA   +  MP   D++V   LL +C+   + D  +   + LL ++ +
Sbjct: 602 CIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPN 661

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           ++G ++  + I+A    W ++A +R LM+ KGV K  G SW+ ++D
Sbjct: 662 SAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVND 707



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 204/369 (55%), Gaps = 22/369 (5%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           + IHTQ +     + +F++  +  + +     +Y   LF ++  P+  ++  +I   TT 
Sbjct: 278 KAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLI---TTY 334

Query: 97  WQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
            QK    H+++ + +M++  + P+ +T+  V  +CANL     G  +H  V ++GL +  
Sbjct: 335 VQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDAL 394

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
            V++S++T+Y++ G L SA  VF  I  +D++SW+++I+ YS+ GYAKEA +    MR E
Sbjct: 395 SVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRRE 454

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
              P+E  L SVL  CG +  L  GK V   V+   +D    + SALI MY KCG++  A
Sbjct: 455 GPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEA 514

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            ++F+ M   ++++W AMI  YA++G S EAI LF ++   G+ PD +T IGVL+AC+  
Sbjct: 515 SKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHA 574

Query: 335 GALDLGKW-----VDKYASQRGLRH-----DIFC--GSIDDALKVFEDMPV-TNEVSWNA 381
           G +DLG +      ++Y       H     D+ C  G + +A  +   MP  T++V W+ 
Sbjct: 575 GMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWST 634

Query: 382 MISALAFNG 390
           ++ +   +G
Sbjct: 635 LLRSCRVHG 643



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 201/422 (47%), Gaps = 18/422 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANL 132
           +F +++  +E ++  +I G   A   Y  +L L+  M  + GL+ D F       +C   
Sbjct: 112 MFDKMTHRDEISWTTLIAGYVNASDSYE-ALILFSNMWVQPGLQRDQFMISVALKACGLG 170

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           + +  G  +H    K GL     VS +LI MY + GK++   +VF ++ +R++VSW ++I
Sbjct: 171 VNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAII 230

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +G    GY  EA+  F  M   +   D  T    L +  D   L  GK +    +K   D
Sbjct: 231 AGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFD 290

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            + ++ + L  MY KCG      R+F+ M   DVV+W  +IT Y Q G    A+  F RM
Sbjct: 291 ESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRM 350

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
           + + V+P+K T   V+SACA++     G+ +  +  + GL   +             G +
Sbjct: 351 RKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLL 410

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A  VF  +   + +SW+ +I+  +  G A EA      M +EG   +PN+     VLS
Sbjct: 411 KSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREG--PKPNEFALSSVLS 468

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
            C    L+++G+++   +    G+  ++  +S ++ +Y++ G + EA      M  K++ 
Sbjct: 469 VCGSMALLEQGKQVHAHV-LCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGM--KINN 525

Query: 482 IV 483
           I+
Sbjct: 526 II 527



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 193/422 (45%), Gaps = 61/422 (14%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV- 226
           G+L  +R +FD++  RD +SW ++I+GY     + EA+ LF  M  +  L  +  ++SV 
Sbjct: 104 GQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVA 163

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +CG   ++  G+ + GF VK+ +  + ++ SALIDMY K G +    RVF  M  ++V
Sbjct: 164 LKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNV 223

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           V+W A+I      G + EA++ F+ M  + V  D  T    L A A    L  GK +   
Sbjct: 224 VSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQ 283

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
             ++G     F           CG  D  +++FE M + + VSW  +I+     G    A
Sbjct: 284 TIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHA 343

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR---------LFDLMS------ 440
           +  F+RM K      PN  TF  V+SAC +  +   G +         L D +S      
Sbjct: 344 VEAFKRMRKSN--VSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIV 401

Query: 441 ---SSFGLIPKSE------------HYSCMVDLYARAGHLSEAWDFV---ERMPEKVDEI 482
              S  GL+  +              +S ++ +Y++ G+  EA+D++    R   K +E 
Sbjct: 402 TLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEF 461

Query: 483 VLGALLGACQK----QKNTDVSQRVMQLLLEIES----------SNSGNYVISSKIFANL 528
            L ++L  C      ++   V   V+ + ++ E+          S  G+   +SKIF  +
Sbjct: 462 ALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGM 521

Query: 529 KM 530
           K+
Sbjct: 522 KI 523


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 261/456 (57%), Gaps = 17/456 (3%)

Query: 119 NFTYPFVFISC-ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI---TMYARCGKLDSAR 174
           N TYP   +SC     +L     + +   K  L  D  +   LI   T       +D A 
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           ++F+ I + D+V +NSM  GYS+     +A+ LF +      LPD+ T  S+L +C    
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
               GK +    +K  ++ N Y+   LI+MY  C  +  A+RVFD ++   VV++NA+IT
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            YA++   NEA+ LF +++   + P+ +T++ VLS+CA +GALDLGKW+ +Y  + GL  
Sbjct: 202 GYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDK 261

Query: 355 ---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
                    D++  CGS+D A+ VFE M V +  +W+AMI A A +G+  + + +FE M+
Sbjct: 262 YVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMA 321

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           +     +P+++TF+G+L AC H GLVDEG R F  MS  +G+IP  +HY CMVDL  RAG
Sbjct: 322 R--AKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAG 379

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA+ F++ +P K   I+   LL +C    N +++++VM  +LE++ S+ G+YVI S 
Sbjct: 380 LLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSN 439

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + A    W+D   +R LM  KG  K PGCS I +D+
Sbjct: 440 LCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDN 475



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 220/402 (54%), Gaps = 25/402 (6%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID---- 64
           S+H ++     PS     LLS L KC S K ++QI    +   +Q    +L ++I+    
Sbjct: 15  SQHSSYYNTTYPS----SLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQ 70

Query: 65  ---LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
                  +YA  LF  I +P+   FN M RG + +      ++ L+ +     L PD++T
Sbjct: 71  NPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLK-AISLFIKALNYNLLPDDYT 129

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +P +  +C    A   G  +H    K+GL+E+ +V  +LI MYA C  +D A++VFDEI 
Sbjct: 130 FPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEIL 189

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           E  +VS+N++I+GY++     EA+ LF +++  +  P+++T++SVL SC  LG L LGKW
Sbjct: 190 EPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKW 249

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +  +V KN +D    + +ALIDMY KCG+L  A  VF++M  +D   W+AMI AYA +G 
Sbjct: 250 IHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQ 309

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-- 354
             + + +F  M  A V PD+IT +G+L AC+  G +D G        + Y    G++H  
Sbjct: 310 GQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYG 369

Query: 355 ---DIF--CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNG 390
              D+    G + +A K  +++P+    + W  ++S+ + +G
Sbjct: 370 CMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHG 411


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 252/448 (56%), Gaps = 14/448 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y     +C    AL  G  VH+ +          +   L+TMY RCG LD AR V D + 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER +VSW +MISGYS+     EA++LF +M     +P+E TL +VL SC     +  GK 
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V   +VK   + + ++GS+L+DMY K   +  ARRVFD +  +DVV+  A+I+ YAQ GL
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
             EA+ LF ++   G+  + +T   +++A + + +LD GK V     ++ L         
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 355 --DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
             D++  CG +  + +VF++M   + VSWNAM+     +G  HE + LF+ + KE    +
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE---VK 309

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ VT + VLS C H GLVDEG  +FD +      +  + HY C++DL  R+G L +A +
Sbjct: 310 PDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALN 369

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +E MP +    + G+LLGAC+   N  V + V Q LLE+E  N+GNYVI S I+A   M
Sbjct: 370 LIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGM 429

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           W D  K+R LM EK V+K PG SWI +D
Sbjct: 430 WKDVFKVRKLMLEKTVTKEPGQSWIILD 457



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 227/447 (50%), Gaps = 40/447 (8%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H +M+    +   FL  R++ +       + A  +  ++   +  ++  MI G +  
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 89

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            +++  +L L+ +M R G  P+ +T   V  SC+   ++  G  VHS + K   +    V
Sbjct: 90  -ERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 148

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SL+ MYA+   +  AR+VFD + ERD+VS  ++ISGY++ G  +EA++LF ++  E  
Sbjct: 149 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM 208

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             + +T  +++ +   L  L  GK V   +++ ++     + ++LIDMY KCG L+ +RR
Sbjct: 209 QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRR 268

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VFD M+ + VV+WNAM+  Y ++GL +E I LF  + +  V PD +TL+ VLS C+  G 
Sbjct: 269 VFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGL 327

Query: 337 LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           +D G              DIF    D  +K  E   + +   +  +I  L  +GR  +AL
Sbjct: 328 VDEGL-------------DIF----DTVVK--EQSALLHTGHYGCIIDLLGRSGRLEKAL 368

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GRRLFDLMSSSFGLIPKSEHY 452
            L E M  E   +      +  +L AC VHA + V E   ++L ++   + G      +Y
Sbjct: 369 NLIENMPFESTPS-----IWGSLLGACRVHANVHVGELVAQKLLEMEPENAG------NY 417

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKV 479
             + ++YA AG   + +   + M EK 
Sbjct: 418 VILSNIYAAAGMWKDVFKVRKLMLEKT 444


>gi|297845488|ref|XP_002890625.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336467|gb|EFH66884.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 287/530 (54%), Gaps = 19/530 (3%)

Query: 9   SRHLAFTELNDPSLLR---EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           SR+  F   N  +LL    +KL+  L+ C     V +IH  M+   I K +F + +++  
Sbjct: 6   SRNFVFRRKNLDALLSPQCQKLVEDLRSCRDIFEVSRIHGYMVKTGIDKDDFSVSKLLAF 65

Query: 66  K---DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
               D  YAS +F  +S  N Y FN MIRG + +  +   + +++ Q++  G+  D F++
Sbjct: 66  SSVLDIRYASSIFEHVSNTNLYMFNTMIRGYSIS-DEPERAFRVFNQLRAKGITLDRFSF 124

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI-R 181
                SC+  L  + G  +H    + G      + ++L+  Y  CG+++ ARKVFDE+  
Sbjct: 125 ITTLKSCSRDLCSSIGEGLHGIALRSGFMVFTDLRNALLQFYCVCGRINDARKVFDEMPH 184

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
             D VS++++++GY ++     A++LF  MR  E   +  TL+S L + GDLG+L   + 
Sbjct: 185 SVDSVSFSTLMNGYLQVSKKALALDLFRIMRNSEVPVNVSTLLSFLSATGDLGNLSGAES 244

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
             G  +K   +L+ ++ +ALI MYGK G +  ARR+FD  + KDVVTWN MI  YA+ G+
Sbjct: 245 AHGLCIKIGFNLDLHLITALIGMYGKIGDIGSARRIFDCAIRKDVVTWNCMIDQYAKMGI 304

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
             E + L  +MKY  + P+  T +G+LS+CA+  A  +G+ V     +  +  D   G+ 
Sbjct: 305 LEECVWLLRQMKYERMKPNSSTFVGLLSSCANSEAAFVGRSVADLVEEERIALDAKLGTA 364

Query: 361 ----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                     +D A+++F  M   +  SW AMIS    +G A EA+ LF +M +E    R
Sbjct: 365 LVDMYAKLGMLDKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVR 424

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN++TF+ VL+AC H GL+ EG R F  M  ++   PK EHY C+VDL  RAG L EA++
Sbjct: 425 PNEITFLVVLNACSHGGLIMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYE 484

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
            +  +P   D     ALL AC+   N D+ + VM  L E++  +  + ++
Sbjct: 485 LIRNLPITSDSTAWRALLAACRVYGNADLGESVMMRLAEMDEIHPADAIL 534


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 168/430 (39%), Positives = 252/430 (58%), Gaps = 46/430 (10%)

Query: 173 ARKVFD--EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           A+++F+  E ++ +   WNS +   ++     +A+ LF R+R+ +  PD  T  SVL +C
Sbjct: 79  AQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
            +L DL  G+ + G V K     N Y+ + ++ +Y  CG +  AR +F+ M  +DVVTWN
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198

Query: 291 -------------------------------AMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                                          +MI  Y Q G + EAI LF +M+ AGV  
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC 258

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +++T++ VL+ACA +GALDLG  + +Y+++ G + ++            CG +++A KVF
Sbjct: 259 NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVF 318

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E+M     VSW+AMI  LA +GRA EAL LF  MS+ G    PN VTFIG+L AC H GL
Sbjct: 319 EEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG--IEPNGVTFIGLLHACSHMGL 376

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + EGRR F  M+  +G+IP+ EHY CMVDL +RAG L EA +F+  MP K + +V GALL
Sbjct: 377 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 436

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+  KN ++++  ++ LLE++  N G YV+ S I+A    W+D+A++R  M+++ V K
Sbjct: 437 GACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKK 496

Query: 549 TPGCSWIGID 558
           TPG S I +D
Sbjct: 497 TPGWSSITVD 506



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 231/478 (48%), Gaps = 74/478 (15%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQI--SRP 81
           + LL+   S   ++Q+H Q++          L R+         F+YA  +F  +   +P
Sbjct: 32  IDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKP 91

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             + +N  ++ L         ++ L+Y++++  + PD FT   V  +C NLL L++G  +
Sbjct: 92  ETFVWNSCLKALAEGDSPID-AIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 150

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN------------ 189
           H  V K+G   + ++ + ++ +YA CG++  AR +F+++ +RD+V+WN            
Sbjct: 151 HGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDH 210

Query: 190 -------------------SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
                              SMI+GY + G AKEA+ LF +M E     +E+T+V+VL +C
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAAC 270

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
            DLG L LG  +  +  ++    N  + + LIDMY KCG L  A +VF+ M  + VV+W+
Sbjct: 271 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           AMI   A +G + EA+ LF+ M   G+ P+ +T IG+L AC+ +G +  G+    +AS  
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRF--FAS-- 386

Query: 351 GLRHDIFCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                           +  D  +  ++  +  M+  L+  G  HEA      M       
Sbjct: 387 ----------------MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNM-----PM 425

Query: 410 RPNDVTFIGVLSAC-VHAG--LVDEG-RRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           +PN V +  +L AC VH    + +E  + L +L   + G      +Y  + ++YA AG
Sbjct: 426 KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDG------YYVVLSNIYAEAG 477


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 300/553 (54%), Gaps = 28/553 (5%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C +   +   + IH       +    F+   +IDL      F  A+ +F ++   +
Sbjct: 105 VLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             A+N M+ G       Y H++     M+ R GL+P+  T   +    A   AL  G SV
Sbjct: 165 VVAWNAMLAGYANHGM-YHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSV 223

Query: 142 HSSVFKIGLDEDDH---VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           H+   +  LD+++    +  +L+ MYA+C  L  A +VF  +  R+ V+W+++I G+   
Sbjct: 224 HAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLC 283

Query: 199 GYAKEAVELFGRMREEE--FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
               EA  LF  M  E   FL    ++ S L  C  L DL +G  +   + K+ +  +  
Sbjct: 284 DRMTEAFNLFKDMLVEGMCFL-SATSVASALRVCASLADLRMGTQLHALLAKSGIHADLT 342

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            G++L+ MY K G +  A  +FD +  KD +++ A+++ Y QNG + EA ++F +M+   
Sbjct: 343 AGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACN 402

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDAL 365
           V PD  T++ ++ AC+ + AL  G+        RGL           D++  CG ID + 
Sbjct: 403 VQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSR 462

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           +VF+ MP  + VSWN MI+    +G   EA  LF  M  +G    P+DVTFI +++AC H
Sbjct: 463 QVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQG--FEPDDVTFICLIAACSH 520

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           +GLV EG+  FD M+  +G++P+ EHY CMVDL AR G L EA+ F++ MP K D  V G
Sbjct: 521 SGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWG 580

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           ALLGAC+  KN D+ ++V +++ ++    +GN+V+ S IF+    +D++A++R + + KG
Sbjct: 581 ALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKG 640

Query: 546 VSKTPGCSWIGID 558
             K+PGCSWI I+
Sbjct: 641 FKKSPGCSWIEIN 653



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 218/425 (51%), Gaps = 22/425 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS-LKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F +I  P+  A+N +IR  +  W+   H+ + LY  M    + P+ +T+PFV  +C
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYS--WRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKAC 109

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L  L  G ++H+    +GL  D  VS +LI +Y RC +   A  VF ++  RD+V+WN
Sbjct: 110 SALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWN 169

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           +M++GY+  G    A+     M++   L P+  TLVS+L      G L  G  V  + ++
Sbjct: 170 AMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLR 229

Query: 249 NKMDLN---FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
             +D N     +G+AL+DMY KC  LV A RVF  M  ++ VTW+A+I  +       EA
Sbjct: 230 AYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEA 289

Query: 306 IMLFNRMKYAGVNPDKITLIG-VLSACASIGALDLGKWVDKYASQRGLRHDIFCGS---- 360
             LF  M   G+     T +   L  CAS+  L +G  +    ++ G+  D+  G+    
Sbjct: 290 FNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLS 349

Query: 361 -------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                  I++A  +F+++ + + +S+ A++S    NG+A EA L+F++M  +    +P+ 
Sbjct: 350 MYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM--QACNVQPDI 407

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T + ++ AC H   +  GR     +    GL  ++   + ++D+YA+ G +  +    +
Sbjct: 408 ATMVSLIPACSHLAALQHGRCSHGSVIIR-GLALETSICNSLIDMYAKCGRIDLSRQVFD 466

Query: 474 RMPEK 478
           +MP +
Sbjct: 467 KMPAR 471



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 160/336 (47%), Gaps = 18/336 (5%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G+L  AR+VFD I   D  ++N++I  YS  G    A++L+  M      P++ T   VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  L DL  G+ +        +  + ++ +ALID+Y +C    PA  VF  M  +DVV
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 288 TWNAMITAYAQNGLSNEAIM-LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
            WNAM+  YA +G+ + AI  L +     G+ P+  TL+ +L   A  GAL  G  V  Y
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 347 ASQRGLRH------------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             +  L              D++  C  +  A +VF  M V NEV+W+A+I       R 
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRM 286

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EA  LF+ M  E G    +  +    L  C     +  G +L  L++ S G+       
Sbjct: 287 TEAFNLFKDMLVE-GMCFLSATSVASALRVCASLADLRMGTQLHALLAKS-GIHADLTAG 344

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + ++ +YA+AG ++EA    + +  K D I  GALL
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALL 379



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 4/142 (2%)

Query: 349 QRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
           Q+ L   I  G +  A +VF+ +P  +  ++NA+I A ++ G  H A+ L+  M      
Sbjct: 37  QQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYF--R 94

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             PN  TF  VL AC     +  GR +    +++ GL       + ++DLY R      A
Sbjct: 95  VPPNKYTFPFVLKACSALADLCAGRTI-HAHAAAVGLHTDLFVSTALIDLYIRCARFGPA 153

Query: 469 WDFVERMPEKVDEIVLGALLGA 490
            +   +MP + D +   A+L  
Sbjct: 154 ANVFAKMPMR-DVVAWNAMLAG 174


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 301/552 (54%), Gaps = 32/552 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKDF----NYASLLFHQISRP 81
           L +L   C STK   QIHTQ++++  +Q+P      +  L  F     +A  LF  +  P
Sbjct: 62  LRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEP 121

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYY-QMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           + +  N ++R        Y+ +L  YY QM R  + P+++T+P +   C  + ++  G  
Sbjct: 122 DAFICNTIMRTYVNVNDPYT-ALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEK 180

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+ + K G + D  V +SLI MY+ CG++  AR +F+     DLV+WNSMI GY K G 
Sbjct: 181 IHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGE 240

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGS 259
              A ELF  M E +       +   +G+    GD+   +      + NKM   +    +
Sbjct: 241 IGAARELFEEMPERDLFSWNSMIAGYVGN----GDMTAAE-----DLFNKMPFRDIVSWN 291

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            +ID Y +   +  A  +F+ M  ++VV+WN M+  Y +    +E + +F++M      P
Sbjct: 292 CMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKM-MGETMP 350

Query: 320 DKITLIGVLSACASIGALDLGKWVDKY-ASQRGLRHDIF-----------CGSIDDALKV 367
           ++ TL+ VL+ACA +G LD GKW+  Y  + R +  D+            CG++D A  V
Sbjct: 351 NEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDV 410

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ M   + VSWN+MI     +G+A +AL +F  M K G    PND TFI VLSAC H+G
Sbjct: 411 FDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRG--PMPNDATFICVLSACAHSG 468

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           ++ EG   FDLM  ++ + PK EHY CMVDL  RAG + +  + + +MP +    + GAL
Sbjct: 469 MILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGAL 528

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+   N+++++ V + L+E+E  + G Y++ S I+A    WDD   +R +M+E+G++
Sbjct: 529 LSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLT 588

Query: 548 KTPGCSWIGIDD 559
           KT G SW+ I++
Sbjct: 589 KTTGFSWVHIEE 600


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/462 (36%), Positives = 262/462 (56%), Gaps = 18/462 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M RLG++PDNFT+PF+  +C+ L     G+ +H  V K G      +S+SLITMY +C K
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
            + +R+VFDE+ +++ VSW+++I    +    KE   LF +M  E   P    +++ +  
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
                +      V   VV+N +D +  + SA   M+ +CG +  AR++FD +++KD+VTW
Sbjct: 121 VRSHEE---ADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTW 177

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
              I AY +  +  EA+ L  +M   G+ PD ITL+GV+ AC+++ +  L   V    + 
Sbjct: 178 ATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITT 237

Query: 350 RGLRHDIF------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
               + +             CGS+  A KVF+ M   N ++W+AMIS    +G   EAL 
Sbjct: 238 GFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALN 297

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF++M     + +P+ +TF+ +LSAC H+GLV EG   F+ M+  FG+ P+ EHY+CMVD
Sbjct: 298 LFDQMK---ASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVD 354

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           +  RAG L EA DF+ERMP + +  V GALLGAC+   N D+++ V + L +++  N+G 
Sbjct: 355 ILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGR 414

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           YVI   I+       ++  +R LM+ +GV K  G S I I +
Sbjct: 415 YVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKN 456



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 16/202 (7%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL--DEDDHVSHSL 160
           +L L  QM   G+ PD  T   V  +C+ L +      VH  +   G   ++   V  +L
Sbjct: 193 ALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVH-GIITTGFFYNQLLAVETAL 251

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           I +Y +CG L  ARKVFD ++ER++++W++MISGY   G+ +EA+ LF +M+     PD 
Sbjct: 252 IDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMK-ASVKPDH 310

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG------SALIDMYGKCGALVPA 274
           IT VS+L +C   G LV     EG+   N M  +F +       + ++D+ G+ G L  A
Sbjct: 311 ITFVSILSACSHSG-LV----AEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEA 365

Query: 275 RRVFDAM-VNKDVVTWNAMITA 295
               + M V  +   W A++ A
Sbjct: 366 CDFIERMPVRPNAAVWGALLGA 387


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 168/499 (33%), Positives = 282/499 (56%), Gaps = 15/499 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISC 129
           A  LF      N  ++N +I G +     +    +L  +M+R   ++ +  T   V  +C
Sbjct: 353 ARALFDMNGGKNVVSWNTIIWGYSKEGD-FRGVFELLQEMQREEKVRVNEVTVLNVLPAC 411

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           +    L     +H   F+ G  +D+ V+++ +  YA+C  LD A +VF  +  + + SWN
Sbjct: 412 SGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWN 471

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I  +++ G+  ++++LF  M +    PD  T+ S+L +C  L  L  GK + GF+++N
Sbjct: 472 ALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRN 531

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            ++L+ ++G +L+ +Y +C +++  + +FD M NK +V WN MIT ++QN L  EA+  F
Sbjct: 532 GLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTF 591

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            +M   G+ P +I + GVL AC+ + AL LGK V  +A +  L  D F           C
Sbjct: 592 RQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKC 651

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G ++ +  +F+ +   +E  WN +I+    +G   +A+ LFE M  +GG  RP+  TF+G
Sbjct: 652 GCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGG--RPDSFTFLG 709

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC HAGLV EG +    M + +G+ PK EHY+C+VD+  RAG L+EA   V  MP++
Sbjct: 710 VLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE 769

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D  +  +LL +C+   + ++ + V + LLE+E + + NYV+ S ++A L  WD+  K+R
Sbjct: 770 PDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVR 829

Query: 539 ALMREKGVSKTPGCSWIGI 557
             M+E G+ K  GCSWI I
Sbjct: 830 QRMKENGLHKDAGCSWIEI 848



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 205/386 (53%), Gaps = 24/386 (6%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           GL PD  T   V  +CA +  +  G+ VH   FK+G+ E+  V++SL+ MY++CG L  A
Sbjct: 294 GLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEA 353

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGD 232
           R +FD    +++VSWN++I GYSK G  +   EL   M REE+   +E+T+++VL +C  
Sbjct: 354 RALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSG 413

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L+  K + G+  ++    +  + +A +  Y KC +L  A RVF  M  K V +WNA+
Sbjct: 414 EHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNAL 473

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I A+AQNG   +++ LF  M  +G++PD+ T+  +L ACA +  L  GK +  +  + GL
Sbjct: 474 IGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGL 533

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             D F           C S+     +F+ M   + V WN MI+  + N    EAL  F +
Sbjct: 534 ELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQ 593

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL---IPKSEHYSC-MVD 457
           M    G  +P ++   GVL AC     +  G+ +      SF L   + +    +C ++D
Sbjct: 594 MLS--GGIKPQEIAVTGVLGACSQVSALRLGKEVH-----SFALKAHLSEDAFVTCALID 646

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIV 483
           +YA+ G + ++ +  +R+ EK DE V
Sbjct: 647 MYAKCGCMEQSQNIFDRVNEK-DEAV 671



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 173/340 (50%), Gaps = 17/340 (5%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L PDNFT P V  +CA +  +  G +VH+   K G   D  V ++LI MY +CG ++SA 
Sbjct: 191 LAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAV 250

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM---REEEFLPDEITLVSVLGSCG 231
           KVF+ +R R+LVSWNS++   S+ G   E   +F R+    EE  +PD  T+V+V+ +C 
Sbjct: 251 KVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACA 310

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            +G++ +G  V G   K  +     + ++L+DMY KCG L  AR +FD    K+VV+WN 
Sbjct: 311 AVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNT 370

Query: 292 MITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           +I  Y++ G       L   M +   V  +++T++ VL AC+    L   K +  YA + 
Sbjct: 371 IIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRH 430

Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           G   D             C S+D A +VF  M      SWNA+I A A NG   ++L LF
Sbjct: 431 GFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF 490

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
             M   G    P+  T   +L AC     +  G+ +   M
Sbjct: 491 LVMMDSG--MDPDRFTIGSLLLACARLKFLRCGKEIHGFM 528



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 165/312 (52%), Gaps = 17/312 (5%)

Query: 128 SCANLLALNHGVSVHSSV-FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
           +C +   ++ G  VH+ V     L  D  +S  +I MY+ CG    +R VFD  +E+DL 
Sbjct: 101 ACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLF 160

Query: 187 SWNSMISGYSKMGYAKEAVELFGR-MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            +N+++SGYS+    ++A+ LF   +   +  PD  TL  V  +C  + D+ LG+ V   
Sbjct: 161 LYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHAL 220

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K     + ++G+ALI MYGKCG +  A +VF+ M N+++V+WN+++ A ++NG   E 
Sbjct: 221 ALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGEC 280

Query: 306 IMLFNRM---KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
             +F R+   +  G+ PD  T++ V+ ACA++G + +G  V   A + G+  ++      
Sbjct: 281 CGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSL 340

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG + +A  +F+     N VSWN +I   +  G       L + M +E    R 
Sbjct: 341 VDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE-EKVRV 399

Query: 412 NDVTFIGVLSAC 423
           N+VT + VL AC
Sbjct: 400 NEVTVLNVLPAC 411


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 180/503 (35%), Positives = 279/503 (55%), Gaps = 17/503 (3%)

Query: 70  YASLLFHQISRPNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           +A  LF ++S  N+  +++VMI G     +     L     +   G+ PD  T   V  +
Sbjct: 200 FAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKA 259

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C NL  ++ G  VH  V   GL++D  V +SLI MY++C  + SA K F EI E++++SW
Sbjct: 260 CTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISW 319

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N M+S Y       EA+ L G M  E    DE+TL +VL       D +  + V G +++
Sbjct: 320 NLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIR 379

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              + N  + +++ID Y KC  +  AR VFD M  KDVV W+ MI  +A+NG  +EAI +
Sbjct: 380 KGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISV 439

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F +M    V P+ ++++ ++ ACA    L   KW    A +RGL  ++            
Sbjct: 440 FKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSK 498

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I+ +++ F  +P  N V W+AMISA   NG AHEAL+LFE++ + G   +PN VT +
Sbjct: 499 CGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFEKIKQNG--TKPNAVTAL 556

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +LSAC H GL++EG   F  M    G+ P  EHYSC+VD+ +RAG  +EA + +E++P+
Sbjct: 557 SLLSACSHGGLIEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPK 616

Query: 478 KVD--EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           +++    + G LL +C+   N  +       +L++E  +S  Y+++S ++AN  +  DSA
Sbjct: 617 EMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSA 676

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
           KMR L +EKGV    G S + I+
Sbjct: 677 KMRRLAKEKGVKVVAGYSLVHIN 699



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 204/446 (45%), Gaps = 63/446 (14%)

Query: 97  WQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           WQ+   +L+LY++++  G +  D +  P +  +C+N  + N G ++H  + K G      
Sbjct: 28  WQE---ALQLYHEIRISGAQLSDTWVLPSILKACSNT-SFNLGTAMHGCLIKQGCQSSTS 83

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           +++S I  Y + G LDSA++ FD  + +D VSWN M+ G    G     +  F + R   
Sbjct: 84  IANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAH 143

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           F P+  +L+ V+ +  +L     G    G++ ++       + ++L+ +Y +   +  A 
Sbjct: 144 FQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAY 202

Query: 276 RVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLF-NRMKYAGVNPDKITLIGVLSACAS 333
           ++F  M V  DVV+W+ MI  + Q G   +  ++F N +  AG+ PD +T++ VL AC +
Sbjct: 203 KLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTN 262

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           +  + LG  V      RGL  D+F           C ++  A K F+++P  N +SWN M
Sbjct: 263 LKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLM 322

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----------------- 425
           +SA   N    EAL L   M +EG  A  ++VT   VL    H                 
Sbjct: 323 LSAYILNESHLEALALLGTMVREG--AEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRK 380

Query: 426 ------------------AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
                               LV+  R +FD M+           +S M+  +AR G   E
Sbjct: 381 GYESNELLLNSVIDAYAKCNLVELARMVFDGMNK-----KDVVAWSTMIAGFARNGKPDE 435

Query: 468 AWDFVERMPEKV--DEIVLGALLGAC 491
           A    ++M E+V  + + +  L+ AC
Sbjct: 436 AISVFKQMNEEVIPNNVSIMNLMEAC 461


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 180/504 (35%), Positives = 278/504 (55%), Gaps = 18/504 (3%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A  +F  +   +  ++N MI GL    +++  ++  ++ MKR G+ P NF+      SC+
Sbjct: 510  ACSVFQLMPSKDTVSWNSMISGLDHN-ERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCS 568

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +L  L  G  +H   FK GLD D  VS++L+T+YA    ++  +KVF ++ E D VSWNS
Sbjct: 569  SLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNS 628

Query: 191  MISGYSKM-GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
             I   +K      +A++ F  M +  + P+ +T +++L +      L LG  +   ++K 
Sbjct: 629  FIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKY 688

Query: 250  KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIML 308
             +  +  + +AL+  YGKC  +     +F  M  + D V+WN+MI+ Y  +G+ ++A+ L
Sbjct: 689  SVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDL 748

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
               M   G   D  T   VLSACAS+  L+ G  V   A +  L  D+            
Sbjct: 749  VWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAK 808

Query: 358  CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            CG ID A + FE MPV N  SWN+MIS  A +G   +AL +F RM + G +  P+ VTF+
Sbjct: 809  CGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQS--PDHVTFV 866

Query: 418  GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            GVLSAC H GLVDEG + F  M   +GL P+ EH+SCMVDL  RAG + +  DF++ MP 
Sbjct: 867  GVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPM 926

Query: 478  KVDEIVLGALLGACQKQ--KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
              + ++   +LGAC +   +NT++ QR  ++L+E+E  N+ NYV+ S + A    W+D  
Sbjct: 927  DPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVV 986

Query: 536  KMRALMREKGVSKTPGCSWIGIDD 559
            + R  MR+  V K  GCSW+ + D
Sbjct: 987  EARLAMRKAAVKKDAGCSWVNMKD 1010



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 156/290 (53%), Gaps = 1/290 (0%)

Query: 52  IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           +   N LL    +    N    +F Q+   ++ ++N  I  L         +LK + +M 
Sbjct: 592 VSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMM 651

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
           + G +P+  T+  +  + ++   L  G  +H+ + K  + +D+ + ++L+  Y +C +++
Sbjct: 652 QAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQME 711

Query: 172 SARKVFDEIRER-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
               +F  + ER D VSWNSMISGY   G   +A++L   M +     D  T  +VL +C
Sbjct: 712 DCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSAC 771

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             +  L  G  V    V+  ++ +  +GSAL+DMY KCG +  A R F+ M  +++ +WN
Sbjct: 772 ASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWN 831

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           +MI+ YA++G   +A+ +F RMK  G +PD +T +GVLSAC+ +G +D G
Sbjct: 832 SMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEG 881



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 210/425 (49%), Gaps = 25/425 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPF-VFIS 128
           A ++F Q+   N    N ++ GL    Q    + K++ +MK L  +  ++       F  
Sbjct: 405 AKMIFKQMYDRNAVTMNGLMVGLARQHQG-EEAAKVFKEMKDLVEINSESLVVLLSTFTE 463

Query: 129 CANLL-ALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +NL      G  VH+ +F+ GL D    + ++L+ MY +C  +D+A  VF  +  +D V
Sbjct: 464 FSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTV 523

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNSMISG       +EAV  F  M+    +P   +++S L SC  LG L LG+ + G  
Sbjct: 524 SWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEG 583

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN-EA 305
            K  +DL+  + +AL+ +Y +  ++   ++VF  M   D V+WN+ I A A+   S  +A
Sbjct: 584 FKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQA 643

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD----KY--ASQRGLRHDIF-- 357
           +  F  M  AG  P+++T I +L+A +S   L LG  +     KY  A    + + +   
Sbjct: 644 LKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAF 703

Query: 358 ---CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
              C  ++D   +F  M    +EVSWN+MIS    +G  H+A+ L   M + G   + + 
Sbjct: 704 YGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRG--QKLDG 761

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDF 471
            TF  VLSAC     ++ G    ++ + +     +S+    S +VD+YA+ G +  A  F
Sbjct: 762 FTFATVLSACASVATLERG---MEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRF 818

Query: 472 VERMP 476
            E MP
Sbjct: 819 FELMP 823



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 193/403 (47%), Gaps = 41/403 (10%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           +SHS     Q+++L  + D +       + ++L   NH   +H  ++K G  +D    ++
Sbjct: 135 FSHS-----QLQQLDSEFDRYK------TSSSLYDANH---LHLQLYKTGFTDDVFFCNT 180

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI +Y R G L SARK+FDE+ +++LVSW+ +ISGY++     EA  LF  +     LP+
Sbjct: 181 LINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPN 240

Query: 220 EITLVSVLGSCGDLGD--LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC-GALVPARR 276
              + S L +C   G   + LG  +  F+ K     +  + + L+ MY  C G++  A R
Sbjct: 241 HFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHR 300

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN----PDKITLIGVLSACA 332
           VFD +  ++ VTWN++I+ Y + G +  A  LF+ M+  GV     P++ TL  +++A  
Sbjct: 301 VFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAAC 360

Query: 333 SIG--ALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSW 379
           S+    L L + +     + G   D++ GS           +D A  +F+ M   N V+ 
Sbjct: 361 SLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTM 420

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           N ++  LA   +  EA  +F+ M         N  + + +LS       + EG+R    +
Sbjct: 421 NGLMVGLARQHQGEEAAKVFKEMKD---LVEINSESLVVLLSTFTEFSNLKEGKRKGQEV 477

Query: 440 SSSF---GLI-PKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +     GL+  +    + +V++Y +   +  A    + MP K
Sbjct: 478 HAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK 520


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 276/502 (54%), Gaps = 15/502 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F ++   +  A+N ++ G         +    +  Q +  G +PD+ T   V  +C
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A+  AL+    VH+   + GLDE  +VS +++  Y +CG +++AR VFD +  R+ VSWN
Sbjct: 130 ADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWN 189

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI GY+  G A EA+ LF RM +E     + ++++ L +CG+LG L   + V   +V+ 
Sbjct: 190 AMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRV 249

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV-VTWNAMITAYAQNGLSNEAIML 308
            +  N  + +ALI  Y KC     A +VF+ + NK   ++WNAMI  + QN    +A  L
Sbjct: 250 GLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERL 309

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F RM+   V PD  TL+ V+ A A I      +W+  Y+ +  L  D++           
Sbjct: 310 FARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSK 369

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG +  A ++F+     + ++WNAMI     +G    A+ LFE M  +G  + PN+ TF+
Sbjct: 370 CGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEM--KGTGSLPNETTFL 427

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VL+AC HAGLVDEG++ F  M   +GL P  EHY  MVDL  RAG L EAW F++ MP 
Sbjct: 428 SVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPI 487

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           +    V GA+LGAC+  KN ++++   Q++ E+       +V+ + I+AN  MW D A++
Sbjct: 488 EPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARV 547

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R  M +KG+ KTPG S I + +
Sbjct: 548 RTAMEKKGLQKTPGWSIIQLKN 569



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 164/316 (51%), Gaps = 16/316 (5%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  +   CA    L  G +VH+ +   GL  +   S +L  MY +C +   AR+VFD +
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVL 238
             RD V+WN++++GY++ G    A+E   RM+ EE    PD +TLVSVL +C D   L  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
            + V  F ++  +D    + +A++D Y KCGA+  AR VFD M  ++ V+WNAMI  YA 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           NG + EA+ LF RM   GV+    +++  L AC  +G LD  + V +   + GL  ++  
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 358 ----------CGSIDDALKVFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                     C   D A +VF ++      +SWNAMI     N    +A  LF RM  E 
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 407 GAARPNDVTFIGVLSA 422
              RP+  T + V+ A
Sbjct: 318 --VRPDSFTLVSVIPA 331



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 117/280 (41%), Gaps = 64/280 (22%)

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T   +L  CA+   L  G+ V      RGL  +             C    DA +VF+ M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-------- 423
           P  + V+WNA+++  A NG    A+    RM  E G  RP+ VT + VL AC        
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 424 ---VHA------------------------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
              VHA                        G V+  R +FD M      +  S  ++ M+
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMP-----VRNSVSWNAMI 192

Query: 457 DLYARAGHLSEA----WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE- 511
           D YA  G+ +EA    W  V+   +  D  VL A L AC +    D  +RV +LL+ +  
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAA-LQACGELGYLDEVRRVHELLVRVGL 251

Query: 512 SSNSG--NYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           SSN    N +I++  +A  K  D +A+   +  E G  KT
Sbjct: 252 SSNVSVTNALITT--YAKCKRADLAAQ---VFNELGNKKT 286


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 313/611 (51%), Gaps = 89/611 (14%)

Query: 27  LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L  +LK C   PS +     H  +  N  +   F+   ++ +         AS++F +I+
Sbjct: 158 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 217

Query: 80  R---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQM------KRLGLKPDNFTYPFVFISCA 130
           +    +  ++N ++     +   ++ +L L+ +M      K    + D  +   +  +C 
Sbjct: 218 QRGIDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 276

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L A+     VH +  + G   D  V ++LI  YA+CG +++A KVF+ +  +D+VSWN+
Sbjct: 277 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 336

Query: 191 MISGYSKMGYAKEAVELFGRMREEEF---------------------------------- 216
           M++GYS+ G  + A ELF  MR+E                                    
Sbjct: 337 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 396

Query: 217 -LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM----------DLNFYMGSALIDMY 265
            LP+ +T++SVL +C  LG    G  +  + +KN +          D +  + +ALIDMY
Sbjct: 397 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 456

Query: 266 GKCGALVPARRVFD--AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDK 321
            KC +   AR +FD   +  ++VVTW  MI  +AQ G SN+A+ LF  M  +  GV P+ 
Sbjct: 457 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 516

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------------CGSIDDA 364
            T+  +L ACA + A+ +GK +  Y     LRH  +                 CG +D A
Sbjct: 517 YTISCILMACAHLAAIRIGKQIHAYV----LRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF+ M   + +SW +M++    +GR  EAL +F++M K G    P+D+TF+ VL AC 
Sbjct: 573 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV--PDDITFLVVLYACS 630

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H G+VD+G   FD MS+ +GL P++EHY+C +DL AR+G L +AW  V+ MP +   +V 
Sbjct: 631 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 690

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            ALL AC+   N ++++  +  L+E+ + N G+Y + S I+A    W D A++R LM++ 
Sbjct: 691 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 750

Query: 545 GVSKTPGCSWI 555
           G+ K PGCSW+
Sbjct: 751 GIKKRPGCSWV 761



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/546 (28%), Positives = 256/546 (46%), Gaps = 101/546 (18%)

Query: 29  SLLKKCPSTKTVQQIHTQMLIN---------------------FIQKPNF---LLIRIID 64
           SLLK+C S  TV QIH Q++ +                     FI   +    ++   + 
Sbjct: 42  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLA 101

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
               +YA L+  +++      +N++IR       +   ++ +  +M R G +PD+FT P 
Sbjct: 102 CGATDYALLVLERVTPSPAVWWNLLIREHIKQ-GRLDSAINVSCRMLRAGTRPDHFTLPH 160

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER- 183
           V  +C  L +   G + H  +   G + +  + ++L+ MY+RCG L+ A  +FDEI +R 
Sbjct: 161 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 220

Query: 184 --DLVSWNSMISGYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLGD 235
             D++SWNS++S + K   A  A++LF +M      +      D I++V++L +CG L  
Sbjct: 221 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 280

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM--- 292
           +   K V G  ++N    + ++G+ALID Y KCG +  A +VF+ M  KDVV+WNAM   
Sbjct: 281 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 340

Query: 293 --------------------------------ITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
                                           I  Y+Q G S+EA+ LF +M ++G  P+
Sbjct: 341 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQR----------GLRHDIF-----------CG 359
            +T+I VLSACAS+GA   G  +  Y+ +           G   D+            C 
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 360 SIDDALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           S   A  +F+D+P+   N V+W  MI   A  G +++AL LF  M  E     PN  T  
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 520

Query: 418 GVLSACVHAGLVDEGRRL--FDLMSSSFGLIPKSEHY---SCMVDLYARAGHLSEAWDFV 472
            +L AC H   +  G+++  + L    +    +S  Y   +C++D+Y++ G +  A    
Sbjct: 521 CILMACAHLAAIRIGKQIHAYVLRHHRY----ESSAYFVANCLIDMYSKCGDVDTARHVF 576

Query: 473 ERMPEK 478
           + M +K
Sbjct: 577 DSMSQK 582


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 313/611 (51%), Gaps = 89/611 (14%)

Query: 27  LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L  +LK C   PS +     H  +  N  +   F+   ++ +         AS++F +I+
Sbjct: 165 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 224

Query: 80  R---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQM------KRLGLKPDNFTYPFVFISCA 130
           +    +  ++N ++     +   ++ +L L+ +M      K    + D  +   +  +C 
Sbjct: 225 QRGIDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 283

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L A+     VH +  + G   D  V ++LI  YA+CG +++A KVF+ +  +D+VSWN+
Sbjct: 284 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 343

Query: 191 MISGYSKMGYAKEAVELFGRMREEEF---------------------------------- 216
           M++GYS+ G  + A ELF  MR+E                                    
Sbjct: 344 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 403

Query: 217 -LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM----------DLNFYMGSALIDMY 265
            LP+ +T++SVL +C  LG    G  +  + +KN +          D +  + +ALIDMY
Sbjct: 404 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 463

Query: 266 GKCGALVPARRVFD--AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDK 321
            KC +   AR +FD   +  ++VVTW  MI  +AQ G SN+A+ LF  M  +  GV P+ 
Sbjct: 464 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 523

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------------CGSIDDA 364
            T+  +L ACA + A+ +GK +  Y     LRH  +                 CG +D A
Sbjct: 524 YTISCILMACAHLAAIRIGKQIHAYV----LRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF+ M   + +SW +M++    +GR  EAL +F++M K G    P+D+TF+ VL AC 
Sbjct: 580 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV--PDDITFLVVLYACS 637

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H G+VD+G   FD MS+ +GL P++EHY+C +DL AR+G L +AW  V+ MP +   +V 
Sbjct: 638 HCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVW 697

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            ALL AC+   N ++++  +  L+E+ + N G+Y + S I+A    W D A++R LM++ 
Sbjct: 698 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 757

Query: 545 GVSKTPGCSWI 555
           G+ K PGCSW+
Sbjct: 758 GIKKRPGCSWV 768



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/546 (28%), Positives = 256/546 (46%), Gaps = 101/546 (18%)

Query: 29  SLLKKCPSTKTVQQIHTQMLIN---------------------FIQKPNF---LLIRIID 64
           SLLK+C S  TV QIH Q++ +                     FI   +    ++   + 
Sbjct: 49  SLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLA 108

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
               +YA L+  +++      +N++IR       +   ++ +  +M R G +PD+FT P 
Sbjct: 109 CGATDYALLVLERVTPSPAVWWNLLIREHIKQ-GRLDSAINVSCRMLRAGTRPDHFTLPH 167

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER- 183
           V  +C  L +   G + H  +   G + +  + ++L+ MY+RCG L+ A  +FDEI +R 
Sbjct: 168 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 227

Query: 184 --DLVSWNSMISGYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLGD 235
             D++SWNS++S + K   A  A++LF +M      +      D I++V++L +CG L  
Sbjct: 228 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 287

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM--- 292
           +   K V G  ++N    + ++G+ALID Y KCG +  A +VF+ M  KDVV+WNAM   
Sbjct: 288 VPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 347

Query: 293 --------------------------------ITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
                                           I  Y+Q G S+EA+ LF +M ++G  P+
Sbjct: 348 YSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQR----------GLRHDIF-----------CG 359
            +T+I VLSACAS+GA   G  +  Y+ +           G   D+            C 
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 360 SIDDALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           S   A  +F+D+P+   N V+W  MI   A  G +++AL LF  M  E     PN  T  
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTIS 527

Query: 418 GVLSACVHAGLVDEGRRL--FDLMSSSFGLIPKSEHY---SCMVDLYARAGHLSEAWDFV 472
            +L AC H   +  G+++  + L    +    +S  Y   +C++D+Y++ G +  A    
Sbjct: 528 CILMACAHLAAIRIGKQIHAYVLRHHRY----ESSAYFVANCLIDMYSKCGDVDTARHVF 583

Query: 473 ERMPEK 478
           + M +K
Sbjct: 584 DSMSQK 589


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/441 (37%), Positives = 252/441 (57%), Gaps = 44/441 (9%)

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           S+S+I +  + G++  A K+F+E+ E+D+VSW+++ISGY + G  +EA+ +F  M     
Sbjct: 241 SNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM 300

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG---------- 266
             DE+ +VSVL +C  L  +  GK + G V++  ++    + +ALI MY           
Sbjct: 301 RLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQK 360

Query: 267 ---------------------KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
                                KCG++  AR +FD M  KD+V+W+A+I+ YAQ+   +E 
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + LF+ M+   + PD+  L+ V+SAC  + ALD GKWV  Y  + GL+ ++         
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDM 480

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG +++AL+VF  M      SWNA+I  LA NG    +L +F  M   G    PN++
Sbjct: 481 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNG--VIPNEI 538

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+GVL AC H GLVDEGR  F  M    G+ P  +HY CMVDL  RAG L+EA   +E 
Sbjct: 539 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 598

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP   D    GALLGAC+K  +T++ +RV + L+E++  + G +V+ S IFA+   W+D 
Sbjct: 599 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDV 658

Query: 535 AKMRALMREKGVSKTPGCSWI 555
            ++R +M+++GV KTPGCS I
Sbjct: 659 LEVRGMMKQQGVVKTPGCSLI 679



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 231/507 (45%), Gaps = 91/507 (17%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD------FNYASL 73
           P++    L + L  C + K   +I +QM++       F   R++           +Y+  
Sbjct: 37  PTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQ 96

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +I   N + +N M+R    +      +L LY  M +  + PDN+TYP V  +CA  L
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQS-NSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRL 155

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  +H  V K+G D D +V ++LI MYA CG +  ARK+FDE    D VSWNS+++
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY K G  +EA  +F +M +                                        
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQR--------------------------------------- 236

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N    +++I + GK G ++ A ++F+ M  KD+V+W+A+I+ Y QNG+  EA+++F  M 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR-------------------- 353
             G+  D++ ++ VLSACA +  +  GK +     + G+                     
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 354 ---------HDI-------------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
                    H++              CGS++ A  +F+ MP  + VSW+A+IS  A +  
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDC 416

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             E L LF  M  + G  RP++   + V+SAC H   +D+G+ +   +  + GL      
Sbjct: 417 FSETLALFHEM--QLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVIL 473

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEK 478
            + ++D+Y + G +  A +    M EK
Sbjct: 474 GTTLLDMYMKCGCVENALEVFNGMEEK 500



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 215/423 (50%), Gaps = 49/423 (11%)

Query: 43  IHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH 102
           I  QM    I   N +++ +  +     A  LF+++   +  +++ +I G       Y  
Sbjct: 229 IFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGM-YEE 287

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L ++ +M   G++ D      V  +CA+L  +  G  +H  V ++G++   ++ ++LI 
Sbjct: 288 ALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIH 347

Query: 163 MYA-------------------------------RCGKLDSARKVFDEIRERDLVSWNSM 191
           MY+                               +CG ++ AR +FD + E+D+VSW+++
Sbjct: 348 MYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAV 407

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           ISGY++     E + LF  M+  +  PDE  LVSV+ +C  L  L  GKWV  ++ KN +
Sbjct: 408 ISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGL 467

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
            +N  +G+ L+DMY KCG +  A  VF+ M  K V +WNA+I   A NGL   ++ +F+ 
Sbjct: 468 KVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSE 527

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CG 359
           MK  GV P++IT +GVL AC  +G +D G+      ++K+  +  ++H     D+    G
Sbjct: 528 MKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAG 587

Query: 360 SIDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
            +++A K+ E MP+  +V +W A++ A     + H    + ER+ ++    +P+   F  
Sbjct: 588 LLNEAEKLIESMPMAPDVATWGALLGAC----KKHGDTEMGERVGRKLIELQPDHDGFHV 643

Query: 419 VLS 421
           +LS
Sbjct: 644 LLS 646



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 27/231 (11%)

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           ++FD + N +   WN M+ AY Q+  + +A++L+  M    V PD  T   V+ ACA + 
Sbjct: 96  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VR 154

Query: 336 ALDLG-KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
            L+ G K +  +  + G   D++           CG++ DA K+F++ PV + VSWN+++
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +     G   EA L+F++M +    A  + +  +G +      G V E  +LF+ M    
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKM------GQVMEAWKLFNEMDEK- 267

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWD-FVERMPE--KVDEIVLGALLGAC 491
                   +S ++  Y + G   EA   F+E      ++DE+V+ ++L AC
Sbjct: 268 ----DMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSAC 314


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 294/550 (53%), Gaps = 25/550 (4%)

Query: 30  LLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LK C      +  Q IH  +L +  Q   F+    +D+         A  +F ++   +
Sbjct: 59  VLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRD 118

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N M+ G   A   +   L    +  RL G++PD  T   +  S   + +L    +V
Sbjct: 119 IASWNAMLLGF--AQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAV 176

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMG 199
           +S   +IG+  D  V+++LI  Y++CG L SA  +FDEI    R +VSWNSMI+ Y+   
Sbjct: 177 YSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFE 236

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              +AV  +  M +  F PD  T++++L SC     L  G  V    VK   D +  + +
Sbjct: 237 KHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVN 296

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LI MY KCG +  AR +F+ M +K  V+W  MI+AYA+ G  +EA+ LFN M+ AG  P
Sbjct: 297 TLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKP 356

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D +T++ ++S C   GAL+LGKW+D Y+   GL+ ++            CG  +DA ++F
Sbjct: 357 DLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELF 416

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             M     VSW  MI+A A NG   +AL LF  M + G   +PN +TF+ VL AC H GL
Sbjct: 417 YTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMG--MKPNHITFLAVLQACAHGGL 474

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+ G   F++M+  +G+ P  +HYSCMVDL  R GHL EA + ++ MP + D  +  ALL
Sbjct: 475 VERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALL 534

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+     ++ + V + L E+E   +  YV  + I+A+ +MW+  A +R  M+   V K
Sbjct: 535 SACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRK 594

Query: 549 TPGCSWIGID 558
           +PG S I ++
Sbjct: 595 SPGQSIIQVN 604



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 210/431 (48%), Gaps = 19/431 (4%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           ++L L+ QMK+ G+ P+N T+PFV  +CA L  L +   +H+ V K     +  V  + +
Sbjct: 36  NALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATV 95

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MY +CG+L+ A  VF E+  RD+ SWN+M+ G+++ G+      L   MR     PD +
Sbjct: 96  DMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAV 155

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           T++ ++ S   +  L     V  F ++  + ++  + + LI  Y KCG L  A  +FD +
Sbjct: 156 TVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEI 215

Query: 282 VN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            +  + VV+WN+MI AYA      +A+  +  M   G +PD  T++ +LS+C    AL  
Sbjct: 216 NSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFH 275

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G  V  +  + G   D+            CG +  A  +F  M     VSW  MISA A 
Sbjct: 276 GLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAE 335

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
            G   EA+ LF  M  E    +P+ VT + ++S C   G ++ G+ + D  S + GL   
Sbjct: 336 KGYMSEAMTLFNAM--EAAGEKPDLVTVLALISGCGQTGALELGKWI-DNYSINNGLKDN 392

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
               + ++D+YA+ G  ++A +    M  +   +    ++ AC    N DV   +    +
Sbjct: 393 VVVCNALIDMYAKCGGFNDAKELFYTMANRT-VVSWTTMITAC--ALNGDVKDALELFFM 449

Query: 509 EIESSNSGNYV 519
            +E     N++
Sbjct: 450 MLEMGMKPNHI 460



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 58/364 (15%)

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           R   L +WNS        G+A+ A+ LF +M++    P+  T   VL +C  L  L   +
Sbjct: 14  RFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQ 73

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +   V+K+    N ++ +A +DMY KCG L  A  VF  M  +D+ +WNAM+  +AQ+G
Sbjct: 74  IIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSG 133

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
             +    L   M+ +G+ PD +T++ ++ +   + +L     V  +  + G+  D+    
Sbjct: 134 FLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVAN 193

Query: 358 --------CGSIDDALKVFEDM--PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                   CG++  A  +F+++   + + VSWN+MI+A A   +  +A+  ++ M    G
Sbjct: 194 TLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLD--G 251

Query: 408 AARPNDVTFIGVLSAC-----------VHA------------------------GLVDEG 432
              P+  T + +LS+C           VH+                        G V   
Sbjct: 252 GFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSA 311

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA---WDFVERMPEKVDEIVLGALLG 489
           R LF+ MS           ++ M+  YA  G++SEA   ++ +E   EK D + + AL+ 
Sbjct: 312 RFLFNGMSDK-----TCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALIS 366

Query: 490 ACQK 493
            C +
Sbjct: 367 GCGQ 370


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 164/503 (32%), Positives = 287/503 (57%), Gaps = 14/503 (2%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K    A  +F ++   +  ++ +MI       Q + + L+   +M+  G KP+  T   +
Sbjct: 171 KSVEDARKVFEEMHERDVVSWTLMISAFAQCGQ-WDNVLRSLDEMQSEGTKPNKITIISL 229

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C  + A++ G+ V++ V + G++ D  + ++LI MY +CG +  A K F  +  R+ 
Sbjct: 230 LSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNT 289

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            SWN++I G+ + G  KEA+ +F  M  +  +PD ITLVSVL +   LGDL  G+++  +
Sbjct: 290 KSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNY 349

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           +  +++  +  + ++LI+MY KCG +  A  +F+ M  +D+V+W AM+  Y +      A
Sbjct: 350 IKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTA 409

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
             LF+ MK   V   ++ L+ +LSAC+ +GALD G+ +  Y  ++ +R D++        
Sbjct: 410 FNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDM 469

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG ID A ++F  M     ++WNAMI  LA  G+  EA+ LFE++ K     +P+ +
Sbjct: 470 YAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRD-PKPDAI 528

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T   VL AC H G+VDEG   F+LM  + G++P +EHY C+VDL  RAG L EA++F+++
Sbjct: 529 TLKVVLCACTHVGMVDEGLHYFNLM-LTLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQK 587

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP + + ++ G+LL AC+     ++ + + Q ++++  ++ G +V+ S + A    WDD 
Sbjct: 588 MPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDV 647

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
            ++R +M  + V K+PG S I +
Sbjct: 648 EQVRGMMGSRRVEKSPGHSSIQV 670



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 148/510 (29%), Positives = 249/510 (48%), Gaps = 30/510 (5%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFH 76
           R+ LL+ L  C S   + ++H +++   +     +  R++ L        D  YA  +F 
Sbjct: 18  RDSLLAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFD 77

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           ++++P    +N MIRG  +       +L+L+  M+R G+ PDN+T   V  S A   +  
Sbjct: 78  RMAQPTAIVWNCMIRGYNSCHAPMD-ALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWK 136

Query: 137 ---HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G +VH+ V +IG   D  V   LI  Y     ++ ARKVF+E+ ERD+VSW  MIS
Sbjct: 137 GRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMIS 196

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            +++ G     +     M+ E   P++IT++S+L +CG +  +  G WV   V +  ++ 
Sbjct: 197 AFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEA 256

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  + +ALI MY KCG +  A + F  M  ++  +WN +I  + QNG   EA+ +F  M 
Sbjct: 257 DVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEML 316

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV PD ITL+ VLS  A +G L  G+++  Y     +  DI            CG + 
Sbjct: 317 SDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMA 376

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  +FE+M   + VSW AM+       +   A  LF+ M      A  +++  + +LSA
Sbjct: 377 AAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMA--SEMALVSLLSA 434

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVD 480
           C   G +D+GR +   +        +++ +  S +VD+YA+ G +  A +   RM  K  
Sbjct: 435 CSQLGALDKGREIHSYIKEKS---VRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHK-Q 490

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
            +   A++G    Q     +  + + LL++
Sbjct: 491 TLAWNAMIGGLASQGQGKEAVALFEQLLKL 520


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 252/448 (56%), Gaps = 14/448 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y     +C    AL  G  VH+ +          +   L+TMY RCG LD AR V D + 
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER +VSW +MISGYS+     EA++LF +M     +P+E TL +VL SC     +  GK 
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V   +VK   + + ++GS+L+DMY K   +  ARRVFD +  +DVV+  A+I+ YAQ GL
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 224

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
             EA+ LF ++   G+  + +T   +++A + + +LD GK V     ++ L         
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 284

Query: 355 --DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
             D++  CG +  + +VF++M   + VSWNAM+     +G  HE + LF+ + KE    +
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE---VK 341

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ VT + VLS C H GLVDEG  +FD +      +  + HY C++DL  R+G L +A +
Sbjct: 342 PDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALN 401

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +E MP +    + G+LLGAC+   N  V + V Q LLE+E  N+GNYVI S I+A   M
Sbjct: 402 LIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGM 461

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           W D  K+R LM EK V+K PG SWI +D
Sbjct: 462 WKDVFKVRKLMLEKTVTKEPGQSWIILD 489



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 201/381 (52%), Gaps = 23/381 (6%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H +M+    +   FL  R++ +       + A  +  ++   +  ++  MI G +  
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 121

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            +++  +L L+ +M R G  P+ +T   V  SC+   ++  G  VHS + K   +    V
Sbjct: 122 -ERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 180

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SL+ MYA+   +  AR+VFD + ERD+VS  ++ISGY++ G  +EA++LF ++  E  
Sbjct: 181 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM 240

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             + +T  +++ +   L  L  GK V   +++ ++     + ++LIDMY KCG L+ +RR
Sbjct: 241 QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRR 300

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VFD M+ + VV+WNAM+  Y ++GL +E I LF  + +  V PD +TL+ VLS C+  G 
Sbjct: 301 VFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGL 359

Query: 337 LDLGKWVDKYAS----QRGLRHDIFCGSIDD----------ALKVFEDMPVTNEVS-WNA 381
           +D G  +D + +    Q  L H    G I D          AL + E+MP  +  S W +
Sbjct: 360 VDEG--LDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 417

Query: 382 MISALAFNGRAHEALLLFERM 402
           ++ A   +   H   L+ +++
Sbjct: 418 LLGACRVHANVHVGELVAQKL 438


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 180/503 (35%), Positives = 279/503 (55%), Gaps = 17/503 (3%)

Query: 70  YASLLFHQISRPNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           +A  LF ++S  N+  +++VMI G     +     L     +   G+ PD  T   V  +
Sbjct: 200 FAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKA 259

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C NL  ++ G  VH  V   GL++D  V +SLI MY++C  + SA K F EI E++++SW
Sbjct: 260 CTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISW 319

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N M+S Y       EA+ L G M  E    DE+TL +VL       D +  + V G +++
Sbjct: 320 NLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIR 379

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              + N  + +++ID Y KC  +  AR VFD M  KDVV W+ MI  +A+NG  +EAI +
Sbjct: 380 KGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISV 439

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------F 357
           F +M    V P+ ++++ ++ ACA    L   KW    A +RGL  ++            
Sbjct: 440 FKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSK 498

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I+ +++ F  +P  N V W+AMISA   NG AHEAL+LFE++ + G   +PN VT +
Sbjct: 499 CGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFEKIKQNG--TKPNAVTAL 556

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +LSAC H GL++EG   F  M    G+ P  EHYSC+VD+ +RAG  +EA + +E++P+
Sbjct: 557 SLLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPK 616

Query: 478 KVD--EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           +++    + G LL +C+   N  +       +L++E  +S  Y+++S ++AN  +  DSA
Sbjct: 617 EMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSA 676

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
           KMR L +EKGV    G S + I+
Sbjct: 677 KMRRLAKEKGVKVVAGYSLVHIN 699



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 204/446 (45%), Gaps = 63/446 (14%)

Query: 97  WQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           WQ+   +L+LY++++  G +  D +  P +  +C+N  + N G ++H  + K G      
Sbjct: 28  WQE---ALQLYHEIRISGAQLSDTWVLPSILKACSNT-SFNLGTAMHGCLIKQGCQSSTS 83

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           +++S I  Y + G LDSA++ FD  + +D VSWN M+ G    G     +  F + R   
Sbjct: 84  IANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAH 143

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           F P+  +L+ V+ +  +L     G    G++ ++       + ++L+ +Y +   +  A 
Sbjct: 144 FQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAH 202

Query: 276 RVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLF-NRMKYAGVNPDKITLIGVLSACAS 333
           ++F  M V  DVV+W+ MI  + Q G   +  ++F N +  AG+ PD +T++ VL AC +
Sbjct: 203 KLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTN 262

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           +  + LG  V      RGL  D+F           C ++  A K F+++P  N +SWN M
Sbjct: 263 LKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLM 322

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----------------- 425
           +SA   N    EAL L   M +EG  A  ++VT   VL    H                 
Sbjct: 323 LSAYILNESHLEALALLGTMVREG--AEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRK 380

Query: 426 ------------------AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
                               LV+  R +FD M+           +S M+  +AR G   E
Sbjct: 381 GYESNELLLNSVIDAYAKCNLVELARMVFDGMNK-----KDVVAWSTMIAGFARNGKPDE 435

Query: 468 AWDFVERMPEKV--DEIVLGALLGAC 491
           A    ++M E+V  + + +  L+ AC
Sbjct: 436 AISVFKQMNEEVIPNNVSIMNLMEAC 461


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 270/530 (50%), Gaps = 46/530 (8%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  + RP       +I  L+     +   L  +  + R G        P V  SCA
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLC-SHQELLDAFSSLHRRGSDVPPGCVPLVVKSCA 96

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV---- 186
            L A   G  VH      GL  D  V  +L+  YA+ G +D A KVFDE+  +D +    
Sbjct: 97  ILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNC 156

Query: 187 ---------------------------SWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
                                      SWNSMI+ Y+  G  +EA+ LF RM  E   P+
Sbjct: 157 LITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPN 216

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
            IT+ ++   C   GDL  GKW    + +  +  N  + +AL++MY KC A+  ARR FD
Sbjct: 217 AITIATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFD 275

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  +DVV W+ MI  YAQNG  +E++ LF RMK     P+++TL+GVLSACA +G+ +L
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G  +  +   + L    +           CG +  A  VF  M     ++WN+M+  LA 
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           NG A +A+ L++ M++E    +PN++TF+ +L+AC HAGLVD+G   F  M +   + P+
Sbjct: 396 NGFAQDAITLYKEMTEED--VQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQ 453

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            EH +C+VDL  ++G L EA+ F+  M  + + ++   LL AC+   + ++++     LL
Sbjct: 454 VEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLL 513

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            +E  NS  YV+ S I+A+  +W D  ++R LMR K V K    SWI +D
Sbjct: 514 VLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELD 563



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 50/352 (14%)

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM--REEEFLPDEITLVSVLGS 229
           +AR +FD +         ++IS  S++   +E ++ F  +  R  +  P  + LV  + S
Sbjct: 37  AARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLV--VKS 94

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG----------------------- 266
           C  L     GK V    +   +  + ++ +AL+D Y                        
Sbjct: 95  CAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPM 154

Query: 267 --------KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                   K G +V ARR+FD MV +   +WN+MI  YA  G   EA+ LF RM   G  
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGAR 214

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVF 368
           P+ IT+  + S CA  G L+ GKW     +++ L++ I           C +ID+A + F
Sbjct: 215 PNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREF 274

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   + V+W+ MI+  A NGR HE+L LFERM  +  + +PN+VT +GVLSAC   G 
Sbjct: 275 DRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM--KATSCKPNEVTLVGVLSACAQLGS 332

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKV 479
            + G ++   + S    +P + +  S ++D+Y + GH+  A     RM  KV
Sbjct: 333 DELGGQIGSHVESQN--LPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKV 382


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/448 (38%), Positives = 252/448 (56%), Gaps = 14/448 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y     +C    AL  G  VH+ +          +   L+TMY RCG LD AR V D + 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER +VSW +MISGYS+     EA++LF +M     +P+E TL +VL SC     +  GK 
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V   +VK   + + ++GS+L+DMY K   +  ARRVFD +  +DVV+  A+I+ YAQ GL
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
             EA+ LF ++   G+  + +T   +++A + + +LD GK V     ++ L         
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 355 --DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
             D++  CG +  + +VF++M   + VSWNAM+     +G  HE + LF+ + KE    +
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE---VK 309

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ VT + VLS C H GLVDEG  +FD +      +  + HY C++DL  R+G L +A +
Sbjct: 310 PDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALN 369

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +E MP +    + G+LLGAC+   N  V + V Q LLE+E  N+GNYVI S I+A   M
Sbjct: 370 LIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGM 429

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           W D  K+R LM EK V+K PG SWI +D
Sbjct: 430 WKDVFKVRKLMLEKTVTKEPGQSWIILD 457



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 201/381 (52%), Gaps = 23/381 (6%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H +M+    +   FL  R++ +       + A  +  ++   +  ++  MI G +  
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 89

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            +++  +L L+ +M R G  P+ +T   V  SC+   ++  G  VHS + K   +    V
Sbjct: 90  -ERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 148

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SL+ MYA+   +  AR+VFD + ERD+VS  ++ISGY++ G  +EA++LF ++  E  
Sbjct: 149 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM 208

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             + +T  +++ +   L  L  GK V   +++ ++     + ++LIDMY KCG L+ +RR
Sbjct: 209 QCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRR 268

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VFD M+ + VV+WNAM+  Y ++GL +E I LF  + +  V PD +TL+ VLS C+  G 
Sbjct: 269 VFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSGCSHGGL 327

Query: 337 LDLGKWVDKYAS----QRGLRHDIFCGSIDD----------ALKVFEDMPVTNEVS-WNA 381
           +D G  +D + +    Q  L H    G I D          AL + E+MP  +  S W +
Sbjct: 328 VDEG--LDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGS 385

Query: 382 MISALAFNGRAHEALLLFERM 402
           ++ A   +   H   L+ +++
Sbjct: 386 LLGACRVHANVHVGELVAQKL 406


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 191/607 (31%), Positives = 305/607 (50%), Gaps = 82/607 (13%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRP 81
           SLLK C  ++   Q   +H  +L    Q   FL   +I     L +  YA  +F  I +P
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQP 69

Query: 82  NEYAFNVMIR-----GLTTAWQKY-------------------------SHSLKLYYQM- 110
           N +++N ++      GL +  Q+                          S ++++Y  M 
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA----- 165
           K   +  +  T+  + I C+    ++ G  ++  + K G   D  V   L+ MY      
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189

Query: 166 --------------------------RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
                                     RCG ++ ++++F  ++ERD +SW  MI+G  + G
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNG 249

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +EA+++F  MR   F  D+ T  SVL +CG L  L  GK +  +V++     N ++GS
Sbjct: 250 LEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGS 309

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY KC ++  A  VF  M  K+V++W AM+  Y QNG S EA+ +F  M+  GV P
Sbjct: 310 ALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEP 369

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D  TL  V+S+CA++ +L+ G      A   GL   I            CGS +++ ++F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLF 429

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            +M + +EVSW A+++  A  G+A+E + LFERM   G   +P+ VTFIGVLSAC  AGL
Sbjct: 430 TEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHG--LKPDGVTFIGVLSACSRAGL 487

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G + F+ M    G++P  +H +C++DL  RAG L EA +F+  MP   D +    LL
Sbjct: 488 VEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            +C+   + ++ +     L+ +E  N  +YV+ S ++A+   WD  A++R  MR+K V K
Sbjct: 548 SSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRK 607

Query: 549 TPGCSWI 555
            PG SWI
Sbjct: 608 EPGYSWI 614


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 180/530 (33%), Positives = 270/530 (50%), Gaps = 46/530 (8%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF  + RP       +I  L+     +   L  +  + R G        P V  SCA
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLC-SHQELLDAFSSLHRRGSDVPPGCVPLVVKSCA 96

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV---- 186
            L A   G  VH      GL  D  V  +L+  YA+ G +D A KVFDE+  +D +    
Sbjct: 97  ILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNC 156

Query: 187 ---------------------------SWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
                                      SWNSMI+ Y+  G  +EA+ LF RM  E   P+
Sbjct: 157 LITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPN 216

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
            IT+ ++   C   GDL  GKW    + +  +  N  + +AL++MY KC A+  ARR FD
Sbjct: 217 AITIATMFSICAKTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFD 275

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  +DVV W+ MI  YAQNG  +E++ LF RMK     P+++TL+GVLSACA +G+ +L
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G  +  +   + L    +           CG +  A  VF  M     ++WN+M+  LA 
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           NG A +A+ L++ M++E    +PN++TF+ +L+AC HAGLVD+G   F  M +   + P+
Sbjct: 396 NGFAQDAITLYKEMTEED--VQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQ 453

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            EH +C+VDL  ++G L EA+ F+  M  + + ++   LL AC+   + ++++     LL
Sbjct: 454 VEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLL 513

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            +E  NS  YV+ S I+A+  +W D  ++R LMR K V K    SWI +D
Sbjct: 514 VLEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELD 563



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 50/352 (14%)

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM--REEEFLPDEITLVSVLGS 229
           +AR +FD +         ++IS  S++   +E ++ F  +  R  +  P  + LV  + S
Sbjct: 37  AARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLV--VKS 94

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG----------------------- 266
           C  L     GK V    +   +  + ++ +AL+D Y                        
Sbjct: 95  CAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPM 154

Query: 267 --------KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                   K G +V ARR+FD MV +   +WN+MI  YA  G   EA+ LF RM   G  
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGAR 214

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVF 368
           P+ IT+  + S CA  G L+ GKW     +++ L++ I           C +ID+A + F
Sbjct: 215 PNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREF 274

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   + V+W+ MI+  A NGR HE+L LFERM  +  + +PN+VT +GVLSAC   G 
Sbjct: 275 DRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM--KATSCKPNEVTLVGVLSACAQLGS 332

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKV 479
            + G ++   + S    +P + +  S ++D+Y + GH+  A     RM  KV
Sbjct: 333 DELGGQIGSHVESQN--LPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKV 382


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 246/398 (61%), Gaps = 13/398 (3%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR +FD + E D+V +NS+  GYS+     E   LF  + E++ LPD  T  S+L +C  
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L  G+ +    +K  +D N Y+   LI+MY +C  +  AR VFD +V   VV +NAM
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           IT YA+    NEA+ LF  M+   + P++ITL+ VLS+CA +G+LDLGKW+ +YA + G 
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGF 263

Query: 353 RH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
                      D+F  CGS+DDA+ +FE+M   +  +W+AMI A A +G+A  ++L+FER
Sbjct: 264 CKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFER 323

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M  E    +P+++TF+G+L+AC H GLV+EGR  F  M   FG++P  +HY  MVDL  R
Sbjct: 324 MRSEN--VQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGR 381

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AGHL +A++F++++P     ++   LL AC    N +++++V + +LE++ S+ G+YVI 
Sbjct: 382 AGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVIL 441

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++A  K W+    +R +M+++   K PGCS I +++
Sbjct: 442 SNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNN 479



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 217/395 (54%), Gaps = 26/395 (6%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQISRPN 82
           L+ KC S + + QI    + +  +  +F   ++I+           +YA  LF  +S P+
Sbjct: 37  LISKCNSERELMQIQAYAIKSHQEDVSFN-TKLINFCTESPTESSMSYARHLFDAMSEPD 95

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              FN + RG + +         L+ ++    L PDN+T+P +  +CA   AL  G  +H
Sbjct: 96  IVIFNSIARGYSRSTNPLE-VFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLH 154

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
               K+G+D++ +V  +LI MY  C  +D+AR VFD I E  +V +N+MI+GY++     
Sbjct: 155 CLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPN 214

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA+ LF  M+ +   P+EITL+SVL SC  LG L LGKW+  +  K+       + +ALI
Sbjct: 215 EALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALI 274

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DM+ KCG+L  A  +F+ M  KD   W+AMI AYA +G +  ++++F RM+   V PD+I
Sbjct: 275 DMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEI 334

Query: 323 TLIGVLSACASIGALDLGK----W-VDKYASQRGLRH-----DIF--CGSIDDALKVFED 370
           T +G+L+AC+  G ++ G+    W V ++     ++H     D+    G ++DA +  + 
Sbjct: 335 TFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDK 394

Query: 371 MPVT-NEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +P++   + W  +++A +    +H  L L E++S+
Sbjct: 395 LPISPTPMLWRILLAACS----SHNNLELAEKVSE 425


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 307/577 (53%), Gaps = 29/577 (5%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLR--EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL 58
           +LL  +     L    L  PS+ +   KLL+L       K  Q +HT ++ +  Q   F+
Sbjct: 39  LLLFRQMKQNGLEPNNLTFPSVAKACSKLLNL-------KYSQIVHTHVVKSRFQADLFV 91

Query: 59  LIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114
              ++D+        +A  LF ++ + +  ++N MI G           + L+ +M   G
Sbjct: 92  QTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQL-GFVDRVVSLFCEMGIEG 150

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           ++ D+ T   +  S  +L  L    S+HS   KIG+D D  VS++ I  YA+CG+   A 
Sbjct: 151 IRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAE 210

Query: 175 KVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
            VFD I +  +  VSWNSMI+GY+      +AV  F +M    F  D  T++S+L SC  
Sbjct: 211 TVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQ 270

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L  GK +    ++   D +  + + LI MY KCG +  AR +FD M+ K  V+W AM
Sbjct: 271 PEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAM 330

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I  YA+ G  +EA+ LF+ M+  G  PD +T+I ++S C   GAL+LGKW+D YA+  GL
Sbjct: 331 IAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGL 390

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           + ++            CGS+D+A ++F  MP  + VSW  +I+  A NG   EAL LF +
Sbjct: 391 KDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQ 450

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M + G   +PN +TF+ VL AC HAG +++G   F+LM+  + + P  +HYSCM DL  R
Sbjct: 451 MVELG--LKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGR 508

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            G L EA++F++ MP K D  +   LL AC+  +N  + + V   L E+E   +  YV  
Sbjct: 509 KGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQM 568

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + I+A+   WD  A +R +M+     K+PG S + ++
Sbjct: 569 ANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVN 605



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/395 (32%), Positives = 201/395 (50%), Gaps = 17/395 (4%)

Query: 98  QKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
           Q Y+H +L L+ QMK+ GL+P+N T+P V  +C+ LL L +   VH+ V K     D  V
Sbjct: 32  QGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFV 91

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             S++ MY +C +L  A  +F  + +RD+ SWNSMI G++++G+    V LF  M  E  
Sbjct: 92  QTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGI 151

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D +T++ +  S   L DL + + +  F +K  +D +  + +  I  Y KCG    A  
Sbjct: 152 RADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAET 211

Query: 277 VFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           VFD +    K  V+WN+MI  YA     ++A+  F +M   G   D  T++ +LS+C   
Sbjct: 212 VFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQP 271

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
             L  GK +  +  Q G   DI            CG I  A  +F++M     VSW AMI
Sbjct: 272 EVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMI 331

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +  A  G   EA+ LF  M   G   +P+ VT I ++S C   G ++ G+ + D  +++ 
Sbjct: 332 AGYAEKGDLDEAMTLFSAMEAVG--EKPDLVTIISLMSGCGQTGALELGKWI-DTYATAN 388

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           GL       + ++D+YA+ G +  A +    MPEK
Sbjct: 389 GLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEK 423



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 161/359 (44%), Gaps = 60/359 (16%)

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +  WNS I+     GYA +A+ LF +M++    P+ +T  SV  +C  L +L   + V  
Sbjct: 19  VAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            VVK++   + ++ ++++DMY KC  L  A  +F  M  +DV +WN+MI  +AQ G  + 
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDR 138

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
            + LF  M   G+  D +T+IG+  +  S+  L + + +  +  + G+  D+        
Sbjct: 139 VVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIA 198

Query: 358 ----CGSIDDALKVFE--DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-- 409
               CG    A  VF+  D  +   VSWN+MI+  A   +  +A+  F++M   G  A  
Sbjct: 199 AYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADL 258

Query: 410 -----------RP-------------------NDV----TFIGVLSACVHAGLVDEGRRL 435
                      +P                   +D+    T I + S C   G +   R L
Sbjct: 259 STILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKC---GDIGSARYL 315

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA---WDFVERMPEKVDEIVLGALLGAC 491
           FD M     L      ++ M+  YA  G L EA   +  +E + EK D + + +L+  C
Sbjct: 316 FDNM-----LGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGC 369


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/430 (39%), Positives = 251/430 (58%), Gaps = 46/430 (10%)

Query: 173 ARKVFD--EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           A+++F   E ++ +   WNS +   ++     +A+ LF R+R+ +  PD  T  SVL +C
Sbjct: 79  AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 138

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
            +L DL  G+ + G V K     N Y+ + ++ +Y  CG +  AR +F+ M  +DVVTWN
Sbjct: 139 LNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWN 198

Query: 291 -------------------------------AMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                                          +MI  Y Q G + EAI LF +M+ AGV  
Sbjct: 199 IMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC 258

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +++T++ VL+ACA +GALDLG  + +Y+++ G + ++            CG +++A KVF
Sbjct: 259 NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVF 318

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E+M     VSW+AMI  LA +GRA EAL LF  MS+ G    PN VTFIG+L AC H GL
Sbjct: 319 EEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG--IEPNGVTFIGLLHACSHMGL 376

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           + EGRR F  M+  +G+IP+ EHY CMVDL +RAG L EA +F+  MP K + +V GALL
Sbjct: 377 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 436

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+  KN ++++  ++ LLE++  N G YV+ S I+A    W+D+A++R  M+++ V K
Sbjct: 437 GACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKK 496

Query: 549 TPGCSWIGID 558
           TPG S I +D
Sbjct: 497 TPGWSSITVD 506



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 231/478 (48%), Gaps = 74/478 (15%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQI--SRP 81
           + LL+   S   ++Q+H Q++          L R+         F+YA  +F  +   +P
Sbjct: 32  IDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKP 91

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             + +N  ++ L         ++ L+Y++++  + PD FT   V  +C NLL L++G  +
Sbjct: 92  ETFVWNSCLKALAEGDSPID-AIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRIL 150

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN------------ 189
           H  V K+G   + ++ + ++ +YA CG++  AR +F+++ +RD+V+WN            
Sbjct: 151 HGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDH 210

Query: 190 -------------------SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
                              SMI+GY + G AKEA+ LF +M E     +E+T+V+VL +C
Sbjct: 211 EGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAAC 270

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
            DLG L LG  +  +  ++    N  + + LIDMY KCG L  A +VF+ M  + VV+W+
Sbjct: 271 ADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWS 330

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           AMI   A +G + EA+ LF+ M   G+ P+ +T IG+L AC+ +G +  G+    +AS  
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRF--FAS-- 386

Query: 351 GLRHDIFCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                           +  D  +  ++  +  M+  L+  G  HEA      M       
Sbjct: 387 ----------------MTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNM-----PM 425

Query: 410 RPNDVTFIGVLSAC-VHAG--LVDEG-RRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           +PN V +  +L AC VH    + +E  + L +L   + G      +Y  + ++YA AG
Sbjct: 426 KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDG------YYVVLSNIYAEAG 477


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 277/511 (54%), Gaps = 35/511 (6%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF--TYPFVFISCANLLALNHG 138
           P   ++   IR +  A   +  ++ L+ +M+       +   + P    SCA L     G
Sbjct: 12  PPPLSWAHQIR-MAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALG 70

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYAR--CG-----------------KLDSARKVFDE 179
            S+H+   + G   D   +++L+ +Y +  C                   L+S RKVFDE
Sbjct: 71  ASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDE 130

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + ERD+VSWN+++ G ++ G   EA+ L  +M  E F PD  TL SVL    +  D+  G
Sbjct: 131 MIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRG 190

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
             V GF V+N  D + ++GS+LIDMY  C     + +VFD +  +D + WN+++   AQN
Sbjct: 191 SEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQN 250

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           G   EA+ +F RM   GV P  +T   ++  C ++ +L  GK +  Y  + G   ++F  
Sbjct: 251 GSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFIS 310

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG I  A  +F+ M   + VSW AMI   A +G A EAL+LFERM  E G 
Sbjct: 311 SSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERM--ELGN 368

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           A+PN +TF+ VL+AC HAGLVD+G + F  MS  +G++P  EH + + D+  RAG L EA
Sbjct: 369 AKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEA 428

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
           ++F+ +M  K    V   LL AC+  KNT +++ V + ++E+E  + G++V+ S +++  
Sbjct: 429 YNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSAS 488

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             W+++A +R  MR+KG+ K P CSWI + +
Sbjct: 489 GRWNEAAHLRKSMRKKGMKKDPACSWIEVKN 519



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 184/361 (50%), Gaps = 18/361 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++   +  ++N ++ G      ++  +L L  +M R G +PD+FT   V    A   
Sbjct: 127 VFDEMIERDVVSWNTLVLGCAEE-GRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECA 185

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G  VH    + G D D  V  SLI MYA C + D + KVFD +  RD + WNS+++
Sbjct: 186 DVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLA 245

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G ++ G  +EA+ +F RM +    P  +T  S++  CG+L  L  GK +  +V++   + 
Sbjct: 246 GCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFED 305

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ S+LIDMY KCG +  A  +FD M + DVV+W AMI  YA +G + EA++LF RM+
Sbjct: 306 NVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERME 365

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSI 361
                P+ IT + VL+AC+  G +D G        D Y     L H     DI    G +
Sbjct: 366 LGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGEL 425

Query: 362 DDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           D+A      M +    S W+ ++ A     R H+  +L E ++K+     P  +    VL
Sbjct: 426 DEAYNFISKMQIKPTASVWSTLLRAC----RVHKNTMLAEEVAKKIMELEPRSIGSHVVL 481

Query: 421 S 421
           S
Sbjct: 482 S 482


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 280/497 (56%), Gaps = 15/497 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISC 129
           A +LF + +R N  ++N MI GL T    +  +  L+ +M+ +  ++ +  T   +  +C
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFE-AFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
             +  L     +H    + G   D+ V++  +  YA+CG L  A +VF  +  + + SWN
Sbjct: 247 LEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I G ++ G  ++A+ L+ +M     +PD  T+ S+L +   L  L  GK V GFV+++
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            ++++ ++G +L+ +Y  CG    AR +FD M  K  V+WNAMI+ Y+QNGL  +A++LF
Sbjct: 367 GLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILF 426

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--CGSID----- 362
            ++   G  P  I ++ VL AC+   AL LGK    YA +  L  D+F  C +ID     
Sbjct: 427 RKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKS 486

Query: 363 ----DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
               ++  VF+ +   +  SWNA+I+A   +G   E++ LFERM K G    P+  TFIG
Sbjct: 487 GCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVG--QMPDGFTFIG 544

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L+ C HAGLV+EG + F+ M +  G+ PK EHY+C++D+  RAG L +A   V  MPE+
Sbjct: 545 ILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQ 604

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D  V  +LL  C+     ++ Q V + LLE+E  N  NYV  S ++A    WDD  ++R
Sbjct: 605 PDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVR 664

Query: 539 ALMREKGVSKTPGCSWI 555
            ++++ G+ K  GCSWI
Sbjct: 665 QMIKDIGLQKDAGCSWI 681



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/419 (30%), Positives = 218/419 (52%), Gaps = 18/419 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
           +FH +   N  ++N +I G +   + K    + +       GL PD  T   V   CA  
Sbjct: 88  VFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCARE 147

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           + +  G+ +H    K+GL ED  V++SL+ MY++CG L  A+ +FD+   ++ VSWN+MI
Sbjct: 148 VDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMI 207

Query: 193 SGYSKMGYAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
            G    GY  EA  LF  M+ +E+   +E+T++++L +C ++  L   K + G+ +++  
Sbjct: 208 GGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGF 267

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             +  + +  +  Y KCG L+ A RVF +M  K V +WNA+I   AQNG   +A+ L+ +
Sbjct: 268 QYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQ 327

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M Y+G+ PD  T+  +L A A + +L  GK V  +  + GL  D F           CG 
Sbjct: 328 MTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGE 387

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
              A  +F+ M   + VSWNAMIS  + NG   +AL+LF ++  +G   +P+D+  + VL
Sbjct: 388 SSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDG--FQPSDIAVVSVL 445

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC-MVDLYARAGHLSEAWDFVERMPEK 478
            AC     +  G+        +  L+ +    +C  +D+YA++G + E+    + +  K
Sbjct: 446 GACSQQSALRLGKETHCYALKA--LLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK 502



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 212/446 (47%), Gaps = 56/446 (12%)

Query: 100 YSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           YS ++ ++ ++        DNFT+P V  +C   L    G  +H  V K+GL  D  V +
Sbjct: 11  YSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGN 70

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR--EEEF 216
           +LI MY + G +D+A KVF  +  R+LVSWNS+ISG+S+ G++K+  ++   M   EE  
Sbjct: 71  ALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGL 130

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           LPD  TLV+VL  C    D+ +G  + G  VK  +  +  + ++L+DMY KCG L  A+ 
Sbjct: 131 LPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQM 190

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIG 335
           +FD    K+ V+WN MI      G   EA  LF  M+    +  +++T++ +L AC  I 
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS 250

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
            L   K +  Y+ + G ++D             CG +  A +VF  M      SWNA+I 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 385 ALAFNGRAHEALLLFERMSKEG-------------GAARPNDV----------------- 414
             A NG   +AL L+ +M+  G              +A    +                 
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI 370

Query: 415 -TFIGV--LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
            +FIG+  LS  +H G     R LFD M         S  ++ M+  Y++ G   +A   
Sbjct: 371 DSFIGISLLSLYIHCGESSSARLLFDGMEEK-----SSVSWNAMISGYSQNGLPEDALIL 425

Query: 472 VERMPE---KVDEIVLGALLGACQKQ 494
             ++     +  +I + ++LGAC +Q
Sbjct: 426 FRKLVSDGFQPSDIAVVSVLGACSQQ 451


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 302/546 (55%), Gaps = 21/546 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNYASL---LFHQISRPNEYA 85
           +LK C +    ++IH        Q   F+   +I +   F +  +   LF  +   +  +
Sbjct: 224 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 283

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MI GL       + +L +  +M+  G+K +  T   +   C  L  ++  + +H  V
Sbjct: 284 WNAMISGLIQNGNA-AQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K GL+ D  VS++LI MYA+ G L+ ARK F ++   D+VSWNS+I+ Y +      A 
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDM 264
             F +M+   F PD +TLVS+        D    + V GF+++    + +  +G+A++DM
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKIT 323
           Y K G L  A +VF+ +  KDV++WN +IT YAQNGL++EAI ++  M+    + P++ T
Sbjct: 463 YAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGT 522

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
            + +L A A +GAL  G  +     +  L  D+F           CG + DA+ +F  +P
Sbjct: 523 WVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP 582

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + V+WNA+IS    +G A + L LF  M  EG   +P+ VTF+ +LSAC H+G V+EG
Sbjct: 583 QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEG--VKPDHVTFVSLLSACSHSGFVEEG 640

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           +  F LM   +G+ P  +HY CMVDL  RAG+L  A+DF++ MP + D  + GALLGAC+
Sbjct: 641 KWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACR 699

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++ +     L E++S N G YV+ S I+AN+  W+   K+R+L RE+G+ KTPG 
Sbjct: 700 IHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGW 759

Query: 553 SWIGID 558
           S I ++
Sbjct: 760 STIEVN 765



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 246/468 (52%), Gaps = 37/468 (7%)

Query: 36  STKT--VQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVM 89
           STKT   + +H  +++    +  F+  R+++L     D + +   F QI + + YA+N M
Sbjct: 129 STKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSM 188

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           I         +  ++  +YQ+  +  ++PD +T+P V  +C  L+    G  +H   FK+
Sbjct: 189 ISAYVHNGH-FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKL 244

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G   +  V+ SLI MY+R G    AR +FD++  RD+ SWN+MISG  + G A +A+++ 
Sbjct: 245 GFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVL 304

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             MR E    + +T+VS+L  C  LGD+     +  +V+K+ ++ + ++ +ALI+MY K 
Sbjct: 305 DEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKF 364

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G L  AR+ F  M   DVV+WN++I AY QN     A   F +M+  G  PD +TL+ + 
Sbjct: 365 GNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLA 424

Query: 329 SACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNE 376
           S  A        + V  +  +RG L  D+  G+           +D A KVFE +PV + 
Sbjct: 425 SIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDV 484

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           +SWN +I+  A NG A EA+ ++ +M +E     PN  T++ +L A  H G + +G ++ 
Sbjct: 485 ISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI- 542

Query: 437 DLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDFVERMPEK 478
                  G + K+  +      +C++D+Y + G L +A     ++P++
Sbjct: 543 ------HGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 291/561 (51%), Gaps = 44/561 (7%)

Query: 18  NDPSLLREKLL-SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FN 69
           ND + L   +L SLLK C    +    +++H     N      F+   ++++ +      
Sbjct: 81  NDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLV 140

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            A L+F Q+   +  ++  M+ G     + +  +L+L  +M+ +G+K        +    
Sbjct: 141 SARLVFDQMPERDVVSWTTML-GCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVF 199

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHS--LITMYARCGKLDSARKVFDEIRERDLVS 187
            NLL +  G +VH  + +   DE   VS +  LI MY + G L SA+++FD + +R +VS
Sbjct: 200 GNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVS 259

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  MI+G  +     E  + F RM EE+  P+EITL+S++  CG +G L LGKW   +++
Sbjct: 260 WTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLL 319

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +N   ++  + +ALIDMYGKCG +  AR +F+ +  KDV  W+ +I+AYA     ++   
Sbjct: 320 RNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFN 379

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF  M    V P+ +T++ +LS CA  GALDLGKW   Y ++ GL  D+           
Sbjct: 380 LFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYA 439

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A  +F +    +   WN M++  + +G   EAL LF  M   G    PND+TF
Sbjct: 440 KCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHG--VEPNDITF 497

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +  AC H+GL+                    EHY C+VDL  RAGHL EA + +E MP
Sbjct: 498 VSIFHACSHSGLM--------------------EHYGCLVDLLGRAGHLDEAHNIIENMP 537

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + + I+ GALL AC+  KN  + +   + +LE++  N G  V+ S I+A+ K W+D   
Sbjct: 538 MRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTS 597

Query: 537 MRALMREKGVSKTPGCSWIGI 557
           +R  M   G+ K PG SWI +
Sbjct: 598 VREAMSHSGMKKEPGLSWIEV 618


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 300/574 (52%), Gaps = 27/574 (4%)

Query: 15  TELNDPS---LLREKLLSLLKKCPSTKTVQQIHTQML-INFIQK---PNFLLIRIIDLKD 67
           T  NDP+   L     L +  K       +Q+H  ++   F Q     N +L   +  ++
Sbjct: 51  THFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQE 110

Query: 68  FNYASLLFHQISRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQ-MKRLGLK---PDNFTY 122
              A  LF ++   N  ++N+MIR  +    +  S  ++L +   +R+ L+   PD+ T+
Sbjct: 111 AEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITF 170

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             +   C     +  GV +H    K+G D D  V  +L+ +YA+CG +++AR+VF ++  
Sbjct: 171 NGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSC 230

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD--LGDLVLGK 240
           RDLV WN M+S Y      +EA  +F  MR +    DE T  S+L    D  L     GK
Sbjct: 231 RDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGK 290

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            V   V++   D +  + SALI+MY K   ++ ARRVFD M  ++VV WN MI  +  +G
Sbjct: 291 QVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHG 350

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
             NE + L   M   G  PD++T+  ++S+C    A+     V  +A +   +  +    
Sbjct: 351 DGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVAN 410

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CGSI  A K FE     + V+W ++I A AF+G A ++  +FE+M   G   
Sbjct: 411 SLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYG--I 468

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           +P+ + F+GVLSAC H GLV +G   F LM++++ ++P SEHY+C+VDL  R G ++EA+
Sbjct: 469 KPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAF 528

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
           + +  MP +VD   LGA +G+C+   N ++++   + L  IE   S NY + S IFA+ K
Sbjct: 529 EILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQK 588

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
            W D  ++R  M +K  +K PGCSWI I +   S
Sbjct: 589 HWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHS 622


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 290/529 (54%), Gaps = 49/529 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS LF ++   N  +F  +I+G   +  ++  +++L+ ++ R G + +    PFVF +  
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAES-VRFLEAIELFVRLHREGHELN----PFVFTTIL 146

Query: 131 NLLALNH----GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            LL        G  +H+ +FK+G + +  V  +LI  Y+ CG++D AR+VFD I  +D+V
Sbjct: 147 KLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMV 206

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SW  M++ +++    KEA++LF +MR   F P+  T  SV  +C  L    +GK V G  
Sbjct: 207 SWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCA 266

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K++ +L+ Y+G AL+D+Y K G +  ARR F+ +  KDV+ W+ MI  YAQ+  S EA+
Sbjct: 267 LKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAV 326

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            +F +M+ A V P++ T   VL ACA++  L+LG  +  +  + GL  D+F         
Sbjct: 327 EMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY 386

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM------------- 402
             CG +++++++F + P  N+V+WN +I      G   +AL LF  M             
Sbjct: 387 AKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 446

Query: 403 ----------SKEGG------AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
                     + E G        +P+ +TF+GVLSAC +AGL+D+G+  F  M    G+ 
Sbjct: 447 SALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIE 506

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P  EHY+CMV L  R GHL +A   ++ +P +   +V  ALLGAC    + ++ +   Q 
Sbjct: 507 PCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQR 566

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +LE+E  +   +V+ S ++A  K WD+ A +R  M+ KGV K PG SWI
Sbjct: 567 VLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWI 615



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 183/370 (49%), Gaps = 18/370 (4%)

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
           + G  +H  + K G   D    + L+ MY +   L  A K+FDE+ ER+ +S+ ++I GY
Sbjct: 55  SRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGY 114

Query: 196 SKMGYAKEAVELFGRMREE--EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           ++     EA+ELF R+  E  E  P   T +  L    D G+L  G  +   + K   + 
Sbjct: 115 AESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG--IHACIFKLGHES 172

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++G+ALID Y  CG +  AR VFD ++ KD+V+W  M+T +A+N    EA+ LF++M+
Sbjct: 173 NAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMR 232

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSID 362
             G  P+  T   V  AC  + A D+GK V   A +     D++            G ID
Sbjct: 233 MVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDID 292

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA + FE++P  + + W+ MI+  A + ++ EA+ +F +M +      PN  TF  VL A
Sbjct: 293 DARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQ--ALVLPNQFTFASVLQA 350

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C     ++ G ++        GL       + ++D+YA+ G +  + +     P + D  
Sbjct: 351 CATMEGLNLGNQI-HCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT 409

Query: 483 VLGALLGACQ 492
               ++G  Q
Sbjct: 410 WNTVIVGHVQ 419


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 275/497 (55%), Gaps = 44/497 (8%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++ L++QM   G++P+  T   V  +CA L  L  G  V S + ++G++    + ++L+ 
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVD 274

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG + +AR++FDE   ++LV +N+++S Y    +A + + +   M ++   PD++T
Sbjct: 275 MYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVT 334

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG------------- 269
           ++S + +C  LGDL +GK    +V++N ++    + +A+IDMY KCG             
Sbjct: 335 MLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP 394

Query: 270 --------ALVP----------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
                   +L+           A R+FD M+ +D+V+WN MI A  Q  +  EAI LF  
Sbjct: 395 NKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFRE 454

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGS 360
           M+  G+  D++T++G+ SAC  +GALDL KWV  Y  +  +  D+            CG 
Sbjct: 455 MQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGD 514

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
              A+ VF+ M   +  +W A I  +A  G    A+ LF  M ++    +P+DV F+ +L
Sbjct: 515 PSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQ--KVKPDDVVFVALL 572

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           +AC H G VD+GR+LF  M  + G+ P   HY CMVDL  RAG L EA D ++ MP + +
Sbjct: 573 TACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPN 632

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
           ++V G+LL AC+K KN +++    + L ++     G +V+ S I+A+   W D A++R  
Sbjct: 633 DVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQ 692

Query: 541 MREKGVSKTPGCSWIGI 557
           M+EKGV K PG S I +
Sbjct: 693 MKEKGVQKVPGSSSIEV 709



 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 283/534 (52%), Gaps = 60/534 (11%)

Query: 30  LLKKCPSTKTVQQIHTQMLIN--FIQKP----NFLL---IRIIDLKDFNYASLLF--HQI 78
           LL  C + K ++Q+H  M+       KP    N L+   ++I  L+  +YA   F     
Sbjct: 31  LLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDG 90

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           +  + + +N +IRG  +A      ++ LY QM  +G+ PD +T+PF+  +C+ +LAL+ G
Sbjct: 91  NMASLFMYNCLIRGYASAGLG-DQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEG 149

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           V VH +V K+GL+ D  VS+SLI  YA CGK+D  RK+FD + ER++VSW S+I+GYS  
Sbjct: 150 VQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGR 209

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
             +KEAV LF +M E    P+ +T+V V+ +C  L DL LGK V  ++ +  M+L+  M 
Sbjct: 210 DLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMV 269

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+DMY KCG +  AR++FD   NK++V +N +++ Y  +  +++ +++ + M   G  
Sbjct: 270 NALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPR 329

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKV 367
           PDK+T++  ++ACA +G L +GK    Y  + GL           D++  CG  + A KV
Sbjct: 330 PDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKV 389

Query: 368 FEDMPVTNEVSWNAMISALAFNGRA-------------------------------HEAL 396
           FE MP    V+WN++I+ L  +G                                  EA+
Sbjct: 390 FEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAI 449

Query: 397 LLFERMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
            LF  M  +G    P D VT +G+ SAC + G +D  + +   +  +  +    +  + +
Sbjct: 450 ELFREMQNQG---IPGDRVTMVGIASACGYLGALDLAKWVCTYIEKN-DIHVDLQLGTAL 505

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           VD+++R G  S A    +RM EK D     A +G    + NT+ +  +   +LE
Sbjct: 506 VDMFSRCGDPSSAMHVFKRM-EKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLE 558



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 149/320 (46%), Gaps = 9/320 (2%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           ++ +  KC   +   ++   M    +   N L+  ++   D   A  +F ++   +  ++
Sbjct: 373 IIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSW 432

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N MI  L      +  +++L+ +M+  G+  D  T   +  +C  L AL+    V + + 
Sbjct: 433 NTMIGALVQV-SMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIE 491

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           K  +  D  +  +L+ M++RCG   SA  VF  + +RD+ +W + I   +  G  + A+E
Sbjct: 492 KNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIE 551

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGSALIDMY 265
           LF  M E++  PD++  V++L +C   G +  G+ +   + K + +  +      ++D+ 
Sbjct: 552 LFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLL 611

Query: 266 GKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           G+ G L  A  +  +M +  + V W +++ A  ++   N  +  +   K   + P+++ +
Sbjct: 612 GRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKH--KNVELAHYAAEKLTQLAPERVGI 669

Query: 325 IGVLSACASIGALDLGKWVD 344
             +LS   +      GKW D
Sbjct: 670 HVLLSNIYA----SAGKWTD 685


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 302/549 (55%), Gaps = 24/549 (4%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLK C S + +Q    IHT   I  +    ++   ++ +         A  LF+ IS  +
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQD 172

Query: 83  E--YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
               A+N MI   +     ++ ++    QM++ G+ P++ T   +  +     AL+ G +
Sbjct: 173 RDIVAWNAMIAAFSFH-ALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKA 231

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+   +    ++  +  +L+ MYA+C  L  ARK+F+ + +++ V W++MI GY     
Sbjct: 232 IHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDS 291

Query: 201 AKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +A+ L+  M     L P   TL ++L +C  L DL  GK +   ++K+ MDL+  +G+
Sbjct: 292 ISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGN 351

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +LI MY KCG +  A    D M+ KD V+++A+I+   QNG + +A+++F +M+ +G+ P
Sbjct: 352 SLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAP 411

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
              T+I +L AC+ + AL  G     Y   RG  +D             CG I  + ++F
Sbjct: 412 YLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIF 471

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   + +SWN MI     +G   EAL LF+ +   G   +P+DVT I VLSAC H+GL
Sbjct: 472 DRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALG--LKPDDVTLIAVLSACSHSGL 529

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V EG+  F  MS +F + P+  HY CMVDL ARAG+L EA+ F++RMP   +  + GALL
Sbjct: 530 VTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALL 589

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+  KN ++ ++V + +  +    +GN+V+ S I++++  WDD+A +R++ R  G  K
Sbjct: 590 AACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKK 649

Query: 549 TPGCSWIGI 557
           +PGCSW+ I
Sbjct: 650 SPGCSWVEI 658



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 230/431 (53%), Gaps = 20/431 (4%)

Query: 63  IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFT 121
           I   +   A  +F QI +P+   +N+MIR  T AW   +  S+ LY  M +LG+ P NFT
Sbjct: 52  ISRNEIQLARHVFDQIPKPSVVLWNMMIR--TYAWSGPFQQSIYLYLHMLQLGVTPTNFT 109

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI- 180
           +PF+  +C++L AL  G  +H+    +GL  D +VS +L+ MYA+CG L  A+ +F+ I 
Sbjct: 110 FPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSIS 169

Query: 181 -RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
            ++RD+V+WN+MI+ +S      + +    +M++    P+  TLVS+L + G    L  G
Sbjct: 170 HQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQG 229

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           K +  + ++N    N  + +AL+DMY KC  L  AR++F+ +  K+ V W+AMI  Y  +
Sbjct: 230 KAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLH 289

Query: 300 GLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
              ++A+ L++ M    G+NP   TL  +L ACA +  L  GK +  +  + G+  D   
Sbjct: 290 DSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTV 349

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG +D+A+   ++M   + VS++A+IS    NG A +ALL+F +M   G 
Sbjct: 350 GNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGI 409

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           A  P   T I +L AC H   +  G       +   G    +   + ++D+Y++ G ++ 
Sbjct: 410 A--PYLETMIALLPACSHLAALQHGTCCHGY-TVVRGFTNDTSICNAIIDMYSKCGKITI 466

Query: 468 AWDFVERMPEK 478
           + +  +RM  +
Sbjct: 467 SREIFDRMQNR 477



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 208/400 (52%), Gaps = 26/400 (6%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQIS 79
           L+S+L        + Q   IH   + NF      L   ++D+        YA  +F+ ++
Sbjct: 213 LVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVN 272

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHG 138
           + N+  ++ MI G        S +L LY  M  + GL P   T   +  +CA L  L  G
Sbjct: 273 KKNDVCWSAMIGGYVLH-DSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG 331

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H  + K G+D D  V +SLI+MYA+CG +D+A    DE+  +D VS++++ISG  + 
Sbjct: 332 KKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQN 391

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           GYA++A+ +F +M+     P   T++++L +C  L  L  G    G+ V      +  + 
Sbjct: 392 GYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSIC 451

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +A+IDMY KCG +  +R +FD M N+D+++WN MI  Y  +GL  EA+ LF  ++  G+ 
Sbjct: 452 NAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLK 511

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQR-----GLRHDIF-------CGSIDDALK 366
           PD +TLI VLSAC+  G +  GK+     SQ       + H I         G++D+A  
Sbjct: 512 PDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYT 571

Query: 367 VFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
             + MP V N   W A+++A     R H+ + + E++SK+
Sbjct: 572 FIQRMPFVPNVRIWGALLAAC----RTHKNIEMGEQVSKK 607



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 172/360 (47%), Gaps = 19/360 (5%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR VFD+I +  +V WN MI  Y+  G  ++++ L+  M +    P   T   +L +C  
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWN 290
           L  L LG+ +        + ++ Y+ +AL+ MY KCG L  A+ +F+++   ++D+V WN
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           AMI A++ + L  + I    +M+ AGV P+  TL+ +L       AL  GK +  Y  + 
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
               ++            C  +  A K+F  +   N+V W+AMI     +    +AL L+
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           + M    G   P   T   +L AC     +  G++L   M  S G+   +   + ++ +Y
Sbjct: 300 DDMLCIYG-LNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMY 357

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
           A+ G +  A  F++ M  K D +   A++  C +      +++ + +  +++SS    Y+
Sbjct: 358 AKCGIMDNAVGFLDEMIAK-DTVSYSAIISGCVQ---NGYAEKALLIFRQMQSSGIAPYL 413


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 287/503 (57%), Gaps = 24/503 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ +   +   +N MI      +  ++ ++ L+ +M+   +K D  T   +   C +L 
Sbjct: 319 LFNAVPTSDAALWNSMISSYI-GFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDL- 376

Query: 134 ALNHGV----SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
             N G      +H+   K G++ D ++ ++L++MY +  ++ +A+ VF+++R  D++SWN
Sbjct: 377 --NDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWN 434

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MIS +++  +  +A ELF  M E E   +  T+VS+L  C D  DLV G+ + GF +KN
Sbjct: 435 TMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKN 494

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +++N  + ++L +MY  CG    A  +F     +D+V+WN++I++Y +N  + +A++LF
Sbjct: 495 GLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLF 554

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI------------- 356
           N M  + + P+ +T+I +L++C  +  L LG+ +  Y ++R +  ++             
Sbjct: 555 NHM-ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYA 613

Query: 357 FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A K+F  +   + VSWNAMI+    +GR  +A L F +M  +G   +PN+V+F
Sbjct: 614 RCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDG--FKPNNVSF 671

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
             VLSAC H+GL   G +LF  M   FG+ P+  HY CMVDL  R GH SEA  F+  MP
Sbjct: 672 ASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMP 731

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  +  ALL +CQ + N  + + +   L+E+E SN GN+++ S I+A   +W +  +
Sbjct: 732 IEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQ 791

Query: 537 MRALMREKGVSKTPGCSWIGIDD 559
           +R  +RE+G+ K PG SWI I +
Sbjct: 792 IRKWLRERGLGKPPGTSWIVIGN 814



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 184/314 (58%), Gaps = 13/314 (4%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L  Y QM+ LG+ PD+ T P V  +C  L A+ +GV +HS +  + L  D  V  +L+  
Sbjct: 45  LSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDF 104

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y +CG +  A KVF E+ ERDLVSWN++ISGY      KEAV LF  M++    P+  T+
Sbjct: 105 YCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTV 164

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           V++L +CG++ +L LG+ + G+ ++N + D++ Y+G+AL+  Y +  A V + RVF  M+
Sbjct: 165 VALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDA-VLSHRVFSLML 223

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +++V+WNA+IT +   G   +A+ L++ M   G+  D +T++ V+ ACA  G L LG  
Sbjct: 224 VRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQ 283

Query: 343 VDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           + + A +  L +D+F            GS++ +  +F  +P ++   WN+MIS+    G 
Sbjct: 284 LHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGF 343

Query: 392 AHEALLLFERMSKE 405
             EA+ LF +M  E
Sbjct: 344 HAEAIALFIKMRLE 357



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 215/439 (48%), Gaps = 19/439 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS +F ++   +  ++N +I G       Y  ++ L+ +MK+ GL P++ T   + ++C 
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLC-YKEAVLLFVEMKKAGLTPNSRTVVALLLACG 172

Query: 131 NLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
            +L L  G  +H    + GL D D +V  +L+  Y R   + S R VF  +  R++VSWN
Sbjct: 173 EMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWN 231

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I+G+  +G   +A++L+  M  E    D +T++ V+ +C + G L LG  +    +K 
Sbjct: 232 AIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKF 291

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  + ++ +AL++MY   G+L  +  +F+A+   D   WN+MI++Y   G   EAI LF
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALF 351

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDL-GKWVDKYASQRGLRHDIFCGS-------- 360
            +M+   +  D  T+  +LS C  +    + G+ +  +A + G+  D + G+        
Sbjct: 352 IKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVK 411

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              I  A  VFE M   + +SWN MISA A +    +A  LF  M +     + N  T +
Sbjct: 412 HNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCES--EIKFNSYTIV 469

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +L+ C     +  GR +      + GL   +   + + ++Y   G    A +   R P+
Sbjct: 470 SLLAFCKDGSDLVFGRSIHGFAIKN-GLEINTSLNTSLTEMYINCGDERAATNMFTRCPQ 528

Query: 478 KVDEIVLGALLGACQKQKN 496
           + D +   +L+ +  K  N
Sbjct: 529 R-DLVSWNSLISSYIKNDN 546



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 150/300 (50%), Gaps = 14/300 (4%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNS+I  ++K+      +  + +M      PD  T+  VL +CG L  +  G  +  F+ 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              +  +  +G+AL+D Y KCG +  A +VF  M  +D+V+WNA+I+ Y       EA++
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL-RHDIFCGS------ 360
           LF  MK AG+ P+  T++ +L AC  +  L LG+ +  Y  + GL   D + G+      
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 361 --IDDAL--KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
              D  L  +VF  M V N VSWNA+I+     G   +AL L+  M  EG   + + VT 
Sbjct: 208 MRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEG--IKFDAVTM 265

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + V+ AC   G +  G +L  L +  F LI      + ++++Y+  G L  +W     +P
Sbjct: 266 LVVIQACAEYGCLRLGMQLHQL-AIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP 324


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 266/486 (54%), Gaps = 46/486 (9%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-- 173
           +P  F++  +  SC +  +L+ G  +HS +   G   D  +S+ L+ +Y++CG+LD+A  
Sbjct: 51  EPSLFSH--LLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAIT 108

Query: 174 -----------------------------RKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
                                        RK+FDE+ ER++ +WN+M++G  +  + +E 
Sbjct: 109 LFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEG 168

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + LF RM E  FLPDE  L SVL  C  L  LV G+ V G+V K   + N  + S+L  M
Sbjct: 169 LGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHM 228

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG+L    R+  AM +++VV WN +I   AQNG   E +  +N MK AG  PDKIT 
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
           + V+S+C+ +  L  G+ +     + G    +            CG ++ +LKVF +   
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECEN 348

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + V W++MI+A  F+GR  EA+ LF +M +E   A  NDVTF+ +L AC H GL ++G 
Sbjct: 349 GDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEA--NDVTFLSLLYACSHCGLKEKGI 406

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           + FDLM   +G+ P+ EHY+CMVDL  R G + EA   +  MP K D I    LL AC+ 
Sbjct: 407 KFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKI 466

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
            K T++++R+ + +  ++  +   YV+ S I A+ K WDD + +R  MR++ + K PG S
Sbjct: 467 HKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGIS 526

Query: 554 WIGIDD 559
           W+ + +
Sbjct: 527 WLEVKN 532



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 205/418 (49%), Gaps = 19/418 (4%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
            +   LL+L  KC    T   +   M    I   N L+       D+  A  +F ++   
Sbjct: 88  FISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPER 147

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +N M+ GL   ++     L L+ +M  LG  PD F    V   CA L AL  G  V
Sbjct: 148 NVATWNAMVAGLIQ-FEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQV 206

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V K G + +  V  SL  MY +CG L    ++   +  +++V+WN++I+G ++ GY 
Sbjct: 207 HGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYP 266

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +E ++ +  M+   F PD+IT VSV+ SC +L  L  G+ +   V+K    L   + S+L
Sbjct: 267 EEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSL 326

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY +CG L  + +VF    N DVV W++MI AY  +G   EAI LFN+M+   +  + 
Sbjct: 327 ISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEAND 386

Query: 322 ITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIFC--GSIDDALKVFE 369
           +T + +L AC+  G  + G       V+KY  +  L H     D+    GS+++A  +  
Sbjct: 387 VTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIR 446

Query: 370 DMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
            MPV  +V +W  ++SA     + H+   +  R+S+E     P D     +LS  +HA
Sbjct: 447 SMPVKADVITWKTLLSAC----KIHKKTEMARRISEEVFRLDPRDPVPYVLLSN-IHA 499



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 141/311 (45%), Gaps = 53/311 (17%)

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVS-VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G+ K+A + F        +  E +L S +L SC     L LGK +   ++ +    + ++
Sbjct: 35  GHLKQAFDRFS-----SHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFI 89

Query: 258 GSALIDMYGKCGAL-------------------------------VPARRVFDAMVNKDV 286
            + L+++Y KCG L                               V AR++FD M  ++V
Sbjct: 90  SNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNV 149

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
            TWNAM+    Q   + E + LF+RM   G  PD+  L  VL  CA + AL  G+ V  Y
Sbjct: 150 ATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGY 209

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
             + G   ++            CGS+ +  ++   MP  N V+WN +I+  A NG   E 
Sbjct: 210 VRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEV 269

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSC 454
           L  +  M   G   RP+ +TF+ V+S+C     + +G+++  +++ +   LI      S 
Sbjct: 270 LDQYNMMKMAG--FRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV--ISS 325

Query: 455 MVDLYARAGHL 465
           ++ +Y+R G L
Sbjct: 326 LISMYSRCGCL 336


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/585 (30%), Positives = 308/585 (52%), Gaps = 46/585 (7%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQ 77
            D S +   L+ +  +C +     ++  ++    +   N +L   +     ++A  LF  
Sbjct: 170 QDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDS 229

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +   +  ++N+M+  L+ +  +   +L +   M+  G++ D+ TY     +CA L +L  
Sbjct: 230 MPERDVVSWNMMVSALSQS-GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW 288

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+ V +     D +V+ +L+ +YA+ G    A+ VF+ + +R+ V+W  +ISG+ +
Sbjct: 289 GKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQ 348

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G   E+VELF +MR E    D+  L +++  C    DL LG+ +    +K+       +
Sbjct: 349 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 258 GSALIDMYGKC-------------------------------GALVPARRVFDAMVNKDV 286
            ++LI MY KC                               G +  AR  FD M  K+V
Sbjct: 409 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 468

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           +TWNAM+ AY Q+G   + + ++  M     V PD +T + +   CA +GA  LG  +  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIG 528

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
              + GL  D             CG I +A KVF+ + V + VSWNAMI+  + +G   +
Sbjct: 529 RTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 588

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A+ +F+ + K G  A+P+ ++++ VLS C H+GLV EG+  FD+M  +  + P  EH+SC
Sbjct: 589 AIEIFDDILKRG--AKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSC 646

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514
           MVDL  RAGHL+EA D ++ MP K    V GALL AC+   N ++++   + + E++S +
Sbjct: 647 MVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 706

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           SG+Y++ +KI+A+    DDSA++R LMR+KG+ K PG SW+ +D+
Sbjct: 707 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDN 751



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 206/444 (46%), Gaps = 55/444 (12%)

Query: 46  QMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
           ++L+  I  PN +   ++      L   + A  LF ++   +  ++N ++ G   + Q Y
Sbjct: 60  RLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQ-Y 118

Query: 101 SHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
             SL+ +  M R G   P+ FT      SC  L   +  + + + V K    +D  V+ +
Sbjct: 119 LVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAA 178

Query: 160 LITMYARCGKLDSARK-------------------------------VFDEIRERDLVSW 188
           L+ M+ RCG +D A +                               +FD + ERD+VSW
Sbjct: 179 LVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSW 238

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N M+S  S+ G  +EA+++   M+ +    D  T  S L +C  L  L  GK +   V++
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N   ++ Y+ SAL+++Y K G    A+ VF+++ +++ V W  +I+ + Q G   E++ L
Sbjct: 299 NLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVEL 358

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           FN+M+   +  D+  L  ++S C S   L LG+ +     + G    +            
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C ++  A  +F  M   + VSW +MI+A +  G   +A   F+ MS++      N +T+ 
Sbjct: 419 CDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEK------NVITWN 472

Query: 418 GVLSACVHAGLVDEGRRLFDLMSS 441
            +L A +  G  ++G R++ +M S
Sbjct: 473 AMLGAYIQHGAEEDGLRMYKVMLS 496



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 201/489 (41%), Gaps = 108/489 (22%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK-VFDEIRERDLV 186
           SC    AL    ++H  +  +GL     + ++L+  Y  CG L  AR+ +  +I   +++
Sbjct: 13  SCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVI 72

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMRE-----------------------EEFL------ 217
           + N M++GY+K+G   +AVELFGRM                         E FL      
Sbjct: 73  THNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSG 132

Query: 218 ---PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
              P+  TL   + SCG LG   L   +   V K     +  + +AL+DM+ +CGA+  A
Sbjct: 133 DSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLA 192

Query: 275 RR-------------------------------VFDAMVNKDVVTWNAMITAYAQNGLSN 303
            R                               +FD+M  +DVV+WN M++A +Q+G   
Sbjct: 193 SRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVR 252

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW-----------VDKYASQRGL 352
           EA+ +   M+  GV  D  T    L+ACA + +L  GK            +D Y +   +
Sbjct: 253 EALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALV 312

Query: 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                 G   +A  VF  +   N V+W  +IS     G   E++ LF +M  E      +
Sbjct: 313 ELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE--LMTLD 370

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLM------------SSSFGLIPKSEH--------- 451
                 ++S C     +  GR+L  L             +S   +  K ++         
Sbjct: 371 QFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFR 430

Query: 452 ---------YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
                    ++ M+  Y++ G++++A +F + M EK + I   A+LGA  +    +   R
Sbjct: 431 FMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEK-NVITWNAMLGAYIQHGAEEDGLR 489

Query: 503 VMQLLLEIE 511
           + +++L  E
Sbjct: 490 MYKVMLSEE 498


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 195/567 (34%), Positives = 286/567 (50%), Gaps = 85/567 (14%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP------DNF 120
           +   A  LF+++   N  A+N MI G      +   ++ L+   K L L P      D F
Sbjct: 119 NLEVARRLFNEMPWKNGIAWNSMIHGYACN-GRPKEAVGLF---KDLSLNPLERFCGDTF 174

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
               V  +C NL AL+ G  +H+ +    ++ D  +  SL+ +Y +CG +DSA  V + +
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLM 234

Query: 181 RERD-------------------------------LVSWNSMISGYSKMGYAKEAVELFG 209
           +E D                               +V WNSMISGY     A EA+ELF 
Sbjct: 235 KEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFN 294

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC- 268
            MR +    D  T  SVL +C  LG +  G  V   V K     +  + SAL+DMY KC 
Sbjct: 295 NMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCR 354

Query: 269 ------------------------------GALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
                                         G +  AR++FD M +K +++WN+MI  ++Q
Sbjct: 355 RPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQ 414

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           N    EA+ LF  M   G+  DK +L GV+SACASI +L+LG+ +   A+  GL  D   
Sbjct: 415 NACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQII 474

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG ++   K+F+ M  ++EV WN+M+   A NG   EAL +F++M   G 
Sbjct: 475 STSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVG- 533

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             +P D+TF+GVLSAC H GLV+EGR+ F  M   + + P  EHYSCMVDLYARAG L +
Sbjct: 534 -VQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLED 592

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A + +E+MP K D  +  ++L  C    N  + ++V + +++++  NSG YV  S I+A 
Sbjct: 593 AMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYAT 652

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSW 554
            + W  SA++R LM +K + K PGCSW
Sbjct: 653 FEDWGRSAQVRKLMYDKKIPKVPGCSW 679



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 219/494 (44%), Gaps = 120/494 (24%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++ + N +++N MI G   +  K   SL+L+  M       D F++  V     
Sbjct: 61  AQQLFEEMPKRNCFSWNTMIEGYLKSGSK-GKSLELFDSMPH----KDAFSWNVV----- 110

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                                         I+ +A+ G L+ AR++F+E+  ++ ++WNS
Sbjct: 111 ------------------------------ISGFAKEGNLEVARRLFNEMPWKNGIAWNS 140

Query: 191 MISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           MI GY+  G  KEAV LF  +     E F  D   L +V+G+C +LG L  GK +   +V
Sbjct: 141 MIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIV 200

Query: 248 KNKMDLNFYMGSALIDMYGKCG---------------------ALVP----------ARR 276
            ++++ +  +GS+L+++YGKCG                     AL+           ARR
Sbjct: 201 VDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARR 260

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F    N  VV WN+MI+ Y  N  + EA+ LFN M+  GV  D  T   VLSAC+++G 
Sbjct: 261 IFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGI 320

Query: 337 LDLGKWVDKYASQRGLRHDIF--------------------------------------- 357
           +D G  V  +  + G  +DI                                        
Sbjct: 321 IDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITV 380

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG IDDA ++F+ MP  + +SWN+MI   + N    EAL LF  M+K G   R +  
Sbjct: 381 YSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG--LRMDKF 438

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           +  GV+SAC     ++ G ++F   ++  GL       + +VD Y + G +       +R
Sbjct: 439 SLAGVISACASISSLELGEQIF-ARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDR 497

Query: 475 MPEKVDEIVLGALL 488
           M  K DE+   ++L
Sbjct: 498 M-MKSDEVPWNSML 510



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 162/357 (45%), Gaps = 61/357 (17%)

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           +L   LGSC + G +  G+ +    +K+  +     +G+ L+ MY +C ++  A+++F+ 
Sbjct: 8   SLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  ++  +WN MI  Y ++G   +++ LF+ M +     D  +   V+S  A  G L++ 
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPH----KDAFSWNVVISGFAKEGNLEVA 123

Query: 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +                        ++F +MP  N ++WN+MI   A NGR  EA+ LF+
Sbjct: 124 R------------------------RLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFK 159

Query: 401 RMSKEGGAARPNDVTFI--GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH----YSC 454
            +S         D TF+   V+ AC + G +D G+++   +     ++ + E      S 
Sbjct: 160 DLSLNPLERFCGD-TFVLATVVGACTNLGALDCGKQIHARI-----VVDEVEFDSVLGSS 213

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL----LLEI 510
           +V+LY + G +  A   +  M E  D   L AL+         + ++R+  L     + +
Sbjct: 214 LVNLYGKCGDIDSANHVLNLMKEP-DAFSLSALISGYASCGRMNDARRIFCLKSNACVVL 272

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV--------SKTPGCSWIGIDD 559
            +S    YV +++    L+++++       MR KGV        S    CS +GI D
Sbjct: 273 WNSMISGYVANNEALEALELFNN-------MRRKGVQEDYSTFASVLSACSTLGIID 322


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/585 (30%), Positives = 308/585 (52%), Gaps = 46/585 (7%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQ 77
            D S +   L+ +  +C +     ++  ++    +   N +L   +     ++A  LF  
Sbjct: 190 QDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDS 249

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +   +  ++N+M+  L+ +  +   +L +   M+  G++ D+ TY     +CA L +L  
Sbjct: 250 MPERDVVSWNMMVSALSQS-GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW 308

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+ V +     D +V+ +L+ +YA+ G    A+ VF+ + +R+ V+W  +ISG+ +
Sbjct: 309 GKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQ 368

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G   E+VELF +MR E    D+  L +++  C    DL LG+ +    +K+       +
Sbjct: 369 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 428

Query: 258 GSALIDMYGKC-------------------------------GALVPARRVFDAMVNKDV 286
            ++LI MY KC                               G +  AR  FD M  K+V
Sbjct: 429 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 488

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           +TWNAM+ AY Q+G   + + ++  M     V PD +T + +   CA +GA  LG  +  
Sbjct: 489 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIG 548

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
              + GL  D             CG I +A KVF+ + V + VSWNAMI+  + +G   +
Sbjct: 549 RTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 608

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A+ +F+ + K G  A+P+ ++++ VLS C H+GLV EG+  FD+M  +  + P  EH+SC
Sbjct: 609 AIEIFDDILKRG--AKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSC 666

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514
           MVDL  RAGHL+EA D ++ MP K    V GALL AC+   N ++++   + + E++S +
Sbjct: 667 MVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 726

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           SG+Y++ +KI+A+    DDSA++R LMR+KG+ K PG SW+ +D+
Sbjct: 727 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDN 771



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 206/444 (46%), Gaps = 55/444 (12%)

Query: 46  QMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
           ++L+  I  PN +   ++      L   + A  LF ++   +  ++N ++ G   + Q Y
Sbjct: 80  RLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQ-Y 138

Query: 101 SHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
             SL+ +  M R G   P+ FT      SC  L   +  + + + V K    +D  V+ +
Sbjct: 139 LVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAA 198

Query: 160 LITMYARCGKLDSARK-------------------------------VFDEIRERDLVSW 188
           L+ M+ RCG +D A +                               +FD + ERD+VSW
Sbjct: 199 LVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSW 258

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N M+S  S+ G  +EA+++   M+ +    D  T  S L +C  L  L  GK +   V++
Sbjct: 259 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 318

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N   ++ Y+ SAL+++Y K G    A+ VF+++ +++ V W  +I+ + Q G   E++ L
Sbjct: 319 NLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVEL 378

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           FN+M+   +  D+  L  ++S C S   L LG+ +     + G    +            
Sbjct: 379 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 438

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           C ++  A  +F  M   + VSW +MI+A +  G   +A   F+ MS++      N +T+ 
Sbjct: 439 CDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEK------NVITWN 492

Query: 418 GVLSACVHAGLVDEGRRLFDLMSS 441
            +L A +  G  ++G R++ +M S
Sbjct: 493 AMLGAYIQHGAEEDGLRMYKVMLS 516



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 201/489 (41%), Gaps = 108/489 (22%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK-VFDEIRERDLV 186
           SC    AL    ++H  +  +GL     + ++L+  Y  CG L  AR+ +  +I   +++
Sbjct: 33  SCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVI 92

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMRE-----------------------EEFL------ 217
           + N M++GY+K+G   +AVELFGRM                         E FL      
Sbjct: 93  THNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSG 152

Query: 218 ---PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
              P+  TL   + SCG LG   L   +   V K     +  + +AL+DM+ +CGA+  A
Sbjct: 153 DSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLA 212

Query: 275 RR-------------------------------VFDAMVNKDVVTWNAMITAYAQNGLSN 303
            R                               +FD+M  +DVV+WN M++A +Q+G   
Sbjct: 213 SRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVR 272

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW-----------VDKYASQRGL 352
           EA+ +   M+  GV  D  T    L+ACA + +L  GK            +D Y +   +
Sbjct: 273 EALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALV 332

Query: 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                 G   +A  VF  +   N V+W  +IS     G   E++ LF +M  E      +
Sbjct: 333 ELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE--LMTLD 390

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLM------------SSSFGLIPKSEH--------- 451
                 ++S C     +  GR+L  L             +S   +  K ++         
Sbjct: 391 QFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFR 450

Query: 452 ---------YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
                    ++ M+  Y++ G++++A +F + M EK + I   A+LGA  +    +   R
Sbjct: 451 FMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEK-NVITWNAMLGAYIQHGAEEDGLR 509

Query: 503 VMQLLLEIE 511
           + +++L  E
Sbjct: 510 MYKVMLSEE 518


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/503 (33%), Positives = 287/503 (57%), Gaps = 24/503 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ +   +   +N MI      +  ++ ++ L+ +M+   +K D  T   +   C +L 
Sbjct: 319 LFNAVPTSDAALWNSMISSYI-GFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDL- 376

Query: 134 ALNHGV----SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
             N G      +H+   K G++ D ++ ++L++MY +  ++ +A+ VF+++R  D++SWN
Sbjct: 377 --NDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWN 434

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MIS +++  +  +A ELF  M E E   +  T+VS+L  C D  DLV G+ + GF +KN
Sbjct: 435 TMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKN 494

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +++N  + ++L +MY  CG    A  +F     +D+V+WN++I++Y +N  + +A++LF
Sbjct: 495 GLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLF 554

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI------------- 356
           N M  + + P+ +T+I +L++C  +  L LG+ +  Y ++R +  ++             
Sbjct: 555 NHM-ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYA 613

Query: 357 FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A K+F  +   + VSWNAMI+    +GR  +A L F +M  +G   +PN+V+F
Sbjct: 614 RCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDG--FKPNNVSF 671

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
             VLSAC H+GL   G +LF  M   FG+ P+  HY CMVDL  R GH SEA  F+  MP
Sbjct: 672 ASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMP 731

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  +  ALL +CQ + N  + + +   L+E+E SN GN+++ S I+A   +W +  +
Sbjct: 732 IEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQ 791

Query: 537 MRALMREKGVSKTPGCSWIGIDD 559
           +R  +RE+G+ K PG SWI I +
Sbjct: 792 IRKWLRERGLGKPPGTSWIVIGN 814



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 184/314 (58%), Gaps = 13/314 (4%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L  Y QM+ LG+ PD+ T P V  +C  L A+ +GV +HS +  + L  D  V  +L+  
Sbjct: 45  LSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDF 104

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y +CG +  A KVF E+ ERDLVSWN++ISGY      KEAV LF  M++    P+  T+
Sbjct: 105 YCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTV 164

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           V++L +CG++ +L LG+ + G+ ++N + D++ Y+G+AL+  Y +  A V + RVF  M+
Sbjct: 165 VALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDA-VLSHRVFSLML 223

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +++V+WNA+IT +   G   +A+ L++ M   G+  D +T++ V+ ACA  G L LG  
Sbjct: 224 VRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQ 283

Query: 343 VDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           + + A +  L +D+F            GS++ +  +F  +P ++   WN+MIS+    G 
Sbjct: 284 LHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGF 343

Query: 392 AHEALLLFERMSKE 405
             EA+ LF +M  E
Sbjct: 344 HAEAIALFIKMRLE 357



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 215/439 (48%), Gaps = 19/439 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS +F ++   +  ++N +I G       Y  ++ L+ +MK+ GL P++ T   + ++C 
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLC-YKEAVLLFVEMKKAGLTPNSRTVVALLLACG 172

Query: 131 NLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
            +L L  G  +H    + GL D D +V  +L+  Y R   + S R VF  +  R++VSWN
Sbjct: 173 EMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWN 231

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I+G+  +G   +A++L+  M  E    D +T++ V+ +C + G L LG  +    +K 
Sbjct: 232 AIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKF 291

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  + ++ +AL++MY   G+L  +  +F+A+   D   WN+MI++Y   G   EAI LF
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALF 351

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDL-GKWVDKYASQRGLRHDIFCGS-------- 360
            +M+   +  D  T+  +LS C  +    + G+ +  +A + G+  D + G+        
Sbjct: 352 IKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVK 411

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              I  A  VFE M   + +SWN MISA A +    +A  LF  M +     + N  T +
Sbjct: 412 HNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCES--EIKFNSYTIV 469

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +L+ C     +  GR +      + GL   +   + + ++Y   G    A +   R P+
Sbjct: 470 SLLAFCKDGSDLVFGRSIHGFAIKN-GLEINTSLNTSLTEMYINCGDERAATNMFTRCPQ 528

Query: 478 KVDEIVLGALLGACQKQKN 496
           + D +   +L+ +  K  N
Sbjct: 529 R-DLVSWNSLISSYIKNDN 546



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 149/300 (49%), Gaps = 14/300 (4%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNS+I  ++K+      +  + +M      PD  T+  VL +CG L  +  G  +   + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              +  +  +G+AL+D Y KCG +  A +VF  M  +D+V+WNA+I+ Y       EA++
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL-RHDIFCGS------ 360
           LF  MK AG+ P+  T++ +L AC  +  L LG+ +  Y  + GL   D + G+      
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 361 --IDDAL--KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
              D  L  +VF  M V N VSWNA+I+     G   +AL L+  M  EG   + + VT 
Sbjct: 208 MRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEG--IKFDAVTM 265

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + V+ AC   G +  G +L  L +  F LI      + ++++Y+  G L  +W     +P
Sbjct: 266 LVVIQACAEYGCLRLGMQLHQL-AIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP 324



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 20/155 (12%)

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
           V+KD   WN++I  + +    +  +  + +M+  G+ PD  T+  VL AC  + A  +G 
Sbjct: 24  VSKD---WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNA--IGN 78

Query: 342 WVDKYASQRGLR--HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
            V  ++  RGL   +D+            CG + +A KVF +MP  + VSWNA+IS    
Sbjct: 79  GVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVG 138

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
                EA+LLF  M K G    PN  T + +L AC
Sbjct: 139 CLCYKEAVLLFVEMKKAG--LTPNSRTVVALLLAC 171


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 294/551 (53%), Gaps = 19/551 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISR 80
           + LLSL +   +  +  Q++ Q+L+N + +       +    I L   + AS  F+ I+ 
Sbjct: 16  KTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITF 75

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            N +++N ++   +   + +   L+L+ +M + G   D+F   F   +C  L        
Sbjct: 76  ENLHSWNTILASHSKN-KCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKL 134

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            HS   K+ L+ D +V+ +L+ +Y   G L+ A KVF+E+  ++ V W  MI G+     
Sbjct: 135 FHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSE 194

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFYMGS 259
                ELF RMR   F  D   +  ++ +CG++     GK   G  +K N +D NF++ +
Sbjct: 195 EFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQT 254

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +L+DMY KCG L  A ++F+ +  +DVV W+A+I  +A+NG + E+I +F +M    V P
Sbjct: 255 SLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTP 314

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           + +T   ++ AC+S+G+L  G+ V  Y  + G+  D+            CG I  A +VF
Sbjct: 315 NSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVF 374

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             +P  N  SW+ MI+    +G   EAL LF  M        PN VTF+ VLSAC H+G 
Sbjct: 375 CQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVN--QLPNSVTFVSVLSACSHSGR 432

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           ++EG   F  MS  +G+ P  EHY+CMVDL  RAG + EA  F+  MP +      GALL
Sbjct: 433 IEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALL 492

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+  +  ++++ V + LL +ES  SG YV+ S I+A++ MW+   K R  M EKG+ K
Sbjct: 493 GACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHK 552

Query: 549 TPGCSWIGIDD 559
             G + I I++
Sbjct: 553 IVGFTSIEIEE 563


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 276/513 (53%), Gaps = 16/513 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL      +    A  +F +++  +   +N MI G      ++  S+KL+  M   G 
Sbjct: 261 NGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQ-LGRHEASVKLFMDMID-GF 318

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            PD  +      +C     L  G  VH  +   G + D    + LI MYA+CG L +A++
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD  + +D V+WNS+I+GY++ GY KE +E F  M+ E   PD +T V +L     L D
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLAD 437

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           +  G+ +   V+K   +    +G++L+D+Y KCG +    +VF  M   D+++WN +I +
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS 497

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
                       + N M+  G+ PD+ T++G+L  C+ +     GK +  Y  + G   +
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESN 557

Query: 356 I-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CGS+++ +KVF+ M   + V+W A+ISA    G   +AL  F+ M  
Sbjct: 558 VPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMEL 617

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G    P+ V FI  + AC H+G+V EG R FD M + + L P+ EHY+C+VDL AR+G 
Sbjct: 618 SG--VLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L++A +F+  MP K D  + GALL AC+ + NT+++QRV + +LE+ S ++G YV+ S I
Sbjct: 676 LAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNI 735

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +A L  WD    +R  M+ KG+ K PG SWI I
Sbjct: 736 YATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEI 768



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 244/473 (51%), Gaps = 26/473 (5%)

Query: 14  FTELNDPS--LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF----LLIRIIDLKD 67
           F    +PS   LR  LL  L    +T  ++ +H+ ++ + +         L+ +   +KD
Sbjct: 10  FNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKD 69

Query: 68  FNYASLLFHQISRPNE-YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
              +  +F  IS  N  Y +N +IR LT     ++ +L  Y +M+   L+PD FT+P V 
Sbjct: 70  PISSVSVFRSISPTNNVYLWNSIIRALTHN-GLFTQALGYYTEMREKKLQPDAFTFPSVI 128

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SCA +L L  G  VH    ++G + D ++ ++LI MY+R   LD+AR VF+E+  RD V
Sbjct: 129 NSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSV 188

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNS+ISGY   G+ ++A++++ + R    +PD  T+ SVL +CG L  +  G  V G +
Sbjct: 189 SWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI 248

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            K  +  +  +G+ L+ MY K   L  ARRVF  M  KD VTWN MI  YAQ G    ++
Sbjct: 249 EKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASV 308

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF  M   G  PD +++   + AC   G L +GK+V KY    G   D           
Sbjct: 309 KLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMY 367

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG +  A +VF+     + V+WN++I+    +G   E L  F+ M  E    +P+ VT
Sbjct: 368 AKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME---RKPDSVT 424

Query: 416 FIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           F+ +LS       +++GR +  D++   FG   +    + ++D+YA+ G + +
Sbjct: 425 FVLLLSIFSQLADINQGRGIHCDVI--KFGFEAELIIGNSLLDVYAKCGEMDD 475


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/496 (37%), Positives = 285/496 (57%), Gaps = 17/496 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANL 132
           LF +I   +  ++  +I GL    ++   +L+++ +M   G+  P+ F +  VF +C+ +
Sbjct: 205 LFERIRDKDLISWGSIIAGLAQQGREMD-ALQIFREMIAEGVHHPNEFHFGSVFRACSVV 263

Query: 133 L-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           + +L +G  +H    K  LD + +   SL  MYARC +LDSARKVF  I   DLVSWNS+
Sbjct: 264 VNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSL 323

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+ +S  G   EA+ LF  MR+    PD IT++++L +C     L  G+ +  ++VK  +
Sbjct: 324 INAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGL 383

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             +  + ++L+ MY +C     A  VF    ++DVVTWN+++TA  Q+    +   LF+ 
Sbjct: 384 GGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSL 443

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           +  +  + D+I+L  VLSA A +G  ++ K V  YA + GL  D             CGS
Sbjct: 444 LHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGS 503

Query: 361 IDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +DDA K+FE M    +V SW+++I   A  G A EAL LF RM   G   +PN VTF+GV
Sbjct: 504 LDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLG--VKPNHVTFVGV 561

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC   GLVDEG   + +M   +G++P  EH SC++DL ARAG LSEA  FV++MP + 
Sbjct: 562 LTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEP 621

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+   LL A +   + D+ +R  + +L I+ S+S  YV+   I+A+   W++ A+++ 
Sbjct: 622 DIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKK 681

Query: 540 LMREKGVSKTPGCSWI 555
            MR  GV K+PG SWI
Sbjct: 682 DMRSSGVQKSPGKSWI 697



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 198/391 (50%), Gaps = 16/391 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           ++ L+  M R G  PD F       +C+ L  L  G  VH+   K     D  V ++L+T
Sbjct: 132 AMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVT 191

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEI 221
           MY++ G +     +F+ IR++DL+SW S+I+G ++ G   +A+++F  M  E    P+E 
Sbjct: 192 MYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEF 251

Query: 222 TLVSVLGSCG-DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
              SV  +C   +  L  G+ + G  VK ++D N Y G +L DMY +C  L  AR+VF  
Sbjct: 252 HFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYR 311

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           + + D+V+WN++I A++  GL +EA++LF+ M+ +G+ PD IT++ +L AC    AL  G
Sbjct: 312 IESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQG 371

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           + +  Y  + GL  D+            C     A+ VF +    + V+WN++++A   +
Sbjct: 372 RSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQH 431

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
               +   LF  + +       + ++   VLSA    G  +  +++    +   GL+  +
Sbjct: 432 QHLEDVFKLFSLLHRS--MPSLDRISLNNVLSASAELGYFEMVKQVH-AYAFKVGLVGDA 488

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
              + ++D YA+ G L +A    E M    D
Sbjct: 489 MLSNGLIDTYAKCGSLDDANKLFEIMGTGRD 519



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 202/397 (50%), Gaps = 22/397 (5%)

Query: 129 CANLLALNHGVSVH-----SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           C+ L +L  G  VH     SS     L  +  +S+ LITMY RCG  DSAR VFD + +R
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           + VSW ++I+ +++     +A+ LF  M     +PD+  L S + +C +LGDL LG+ V 
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVH 171

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +K +   +  + +AL+ MY K G++     +F+ + +KD+++W ++I   AQ G   
Sbjct: 172 AQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREM 231

Query: 304 EAIMLFNRMKYAGV-NPDKITLIGVLSACA-SIGALDLGKWVDKYASQRGLRHDIF---- 357
           +A+ +F  M   GV +P++     V  AC+  + +L+ G+ +   + +  L  + +    
Sbjct: 232 DALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCS 291

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  C  +D A KVF  +   + VSWN++I+A +  G   EA++LF  M   G   R
Sbjct: 292 LSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSG--LR 349

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ +T + +L ACV    + +GR +   +    GL       + ++ +YAR    S A D
Sbjct: 350 PDGITVMALLCACVGYDALHQGRSIHSYL-VKLGLGGDVIVSNSLLSMYARCLDFSSAMD 408

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
                 ++ D +   ++L AC + ++ +   ++  LL
Sbjct: 409 VFHETHDR-DVVTWNSILTACVQHQHLEDVFKLFSLL 444


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/579 (31%), Positives = 295/579 (50%), Gaps = 46/579 (7%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           P+ L   LL+   K       +++  +M    +   N LL  +   +       LF  + 
Sbjct: 47  PTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMP 106

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHG 138
             +  ++N +I G ++     + S++LY  + R   ++P   T   + +  + L     G
Sbjct: 107 ERDAVSYNALITGFSSTGSP-ARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALG 165

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR----------------- 181
            SVH  V ++G      V   L+ MYA+ G +  AR+VF E+                  
Sbjct: 166 HSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRC 225

Query: 182 --------------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
                         +RD ++W +M++G ++ G   EA+++F RMR E    D+ T  S+L
Sbjct: 226 KMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSIL 285

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CG L     GK +  ++ +   + N ++GSAL+DMY KC ++  A  VF  M  ++++
Sbjct: 286 TACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W AMI  Y QN  S EA+  F+ M+  G+ PD  TL  V+S+CA++ +L+ G      A
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLA 405

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
              GL   I            CGSI+DA ++F++M   ++VSW A+++  A  G+A E +
Sbjct: 406 LVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETI 465

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LFE+M   G   +P+ VTFIGVLSAC  AGLV++G   FD M     ++P  +HY+CM+
Sbjct: 466 DLFEKMLVNG--LKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMI 523

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DLY+R+G   EA +F+++MP   D      LL +C+ + N ++ +   + LLE +  N  
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPA 583

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +YV+   + A    W + A +R  MR++ V K PGCSWI
Sbjct: 584 SYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 267/484 (55%), Gaps = 14/484 (2%)

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N M+ GL      +  ++ ++  M + G+  D+ T   V    A L  L  G+ +     
Sbjct: 176 NTMVSGLVKN-SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAM 234

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           K+G     +V   L  +Y++CG++++AR +F +I + DLVS+N+MISGY+     + +V 
Sbjct: 235 KVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVR 294

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           LF  +       +  ++V ++      G L L + + GF  K+ +  N  + +AL  +Y 
Sbjct: 295 LFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYS 354

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           +   +  AR +FD    K + +WNAMI+ YAQNGL+ +AI LF  M+   V P+ +T+  
Sbjct: 355 RLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTS 414

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
           +LSACA +GAL LGKWV    ++     +IF           CGSI +A ++F  MP  N
Sbjct: 415 ILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKN 474

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            V+WNAMIS    +G  HEAL LF  M        P  VTF+ VL AC HAGLV EG  +
Sbjct: 475 AVTWNAMISGYGLHGYGHEALNLFNEMLHS--RVSPTGVTFLSVLYACSHAGLVREGDEI 532

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           F  M    G  P  EHY+CMVDL  RAG+L +A DF+ +MP +    V GALLGAC   K
Sbjct: 533 FRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHK 592

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           + ++++     L E++  N G YV+ S I++  + + ++A +R +++ + ++KTPGC+ I
Sbjct: 593 DANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLI 652

Query: 556 GIDD 559
            + +
Sbjct: 653 EVAN 656



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/474 (30%), Positives = 242/474 (51%), Gaps = 29/474 (6%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQIS 79
           R   L+L+ +  +   + Q H Q+++N +      + ++      LK  + ASLLF  I 
Sbjct: 10  RNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIP 69

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHG 138
            P+ + +NV+IR  +      S ++ LY  +++   L+PDNFTY FV IS A+ L L   
Sbjct: 70  NPDLFLYNVLIRAFSLN-NSPSSAVSLYTHLRKSTPLEPDNFTYAFV-ISGASSLGLGLL 127

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           +  HS V   G   D  V  +++  Y +  ++ +ARKVFD + ERD V WN+M+SG  K 
Sbjct: 128 LHAHSIV--AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               EA+ +FG M +     D  T+ +VL    +L DL LG  ++   +K     + Y+ 
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + L  +Y KCG +  AR +F  +   D+V++NAMI+ Y  N  +  ++ LF  +  +G  
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKV 367
            +  +++G++      G L L + +  + ++ G+  +    +           I+ A  +
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLL 365

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F++    +  SWNAMIS  A NG   +A+ LF+ M K     RPN VT   +LSAC   G
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQK--CEVRPNPVTVTSILSACAQLG 423

Query: 428 LVDEGRRLFDLMS-SSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEK 478
            +  G+ + DL++  SF    +S  +  + ++D+YA+ G ++EA      MPEK
Sbjct: 424 ALSLGKWVHDLINRESF----ESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 123/376 (32%), Positives = 200/376 (53%), Gaps = 22/376 (5%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           +   A LLF QI +P+  ++N MI G T   +  S S++L+ ++   G K ++ +   + 
Sbjct: 257 EIETARLLFGQIGQPDLVSYNAMISGYTCNNETES-SVRLFKELLVSGEKVNSSSIVGLI 315

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
                   L+    +H    K G+  +  VS +L T+Y+R  +++SAR +FDE  E+ L 
Sbjct: 316 PVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLA 375

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MISGY++ G  ++A+ LF  M++ E  P+ +T+ S+L +C  LG L LGKWV   +
Sbjct: 376 SWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLI 435

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +   + N ++ +ALIDMY KCG++  A+R+F  M  K+ VTWNAMI+ Y  +G  +EA+
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEAL 495

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV--------------DKYASQRGL 352
            LFN M ++ V+P  +T + VL AC+  G +  G  +              + YA    L
Sbjct: 496 NLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDL 555

Query: 353 RHDIFCGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 G++D AL     MPV      W A++ A   +  A+ A L  +++ +      P
Sbjct: 556 LGR--AGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFE----LDP 609

Query: 412 NDVTFIGVLSACVHAG 427
            +V +  +LS    AG
Sbjct: 610 QNVGYYVLLSNIYSAG 625


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 286/554 (51%), Gaps = 57/554 (10%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQI 78
           E  +SLL+KC S   ++QIH+  +   +        R+I      +  + NYA  +F  I
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTI 67

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
             P+ + +N MI+G    + K SH    + +Y  M    +KPD FT+PF        +AL
Sbjct: 68  PHPSMFIWNTMIKG----YSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMAL 123

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
            HG  + +   K G D +  V  + I M++ CG +D A KVFD     ++V+WN M+SGY
Sbjct: 124 QHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGY 183

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           +               R ++F   ++ LV  L +C  L DL  GK +            +
Sbjct: 184 N---------------RVKQFKISKMLLV--LSACSKLKDLEWGKHI----------FKY 216

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
             G  +  M+  CG +  A+ VFD M  +DVV+W AMI  Y +      A+ LF  M+ +
Sbjct: 217 INGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMS 276

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
            V PD+ T++ +L ACA +GAL+LG+WV     +   ++D F           CG++  A
Sbjct: 277 NVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKA 336

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVF++M   ++ +W  MI  LA NG   EAL +F  M +   +  P+++T+IGVL AC 
Sbjct: 337 KKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIE--ASVTPDEITYIGVLCAC- 393

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
              +VD+G+  F  M+   G+ P   HY CMVDL    G L EA + +  MP K + IV 
Sbjct: 394 ---MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVW 450

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           G+ LGAC+  KN  ++    + +LE+E  N   YV+   I+A  K W++  ++R LM E+
Sbjct: 451 GSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMER 510

Query: 545 GVSKTPGCSWIGID 558
           G+ KTPGCS + ++
Sbjct: 511 GIKKTPGCSLMELN 524


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 281/496 (56%), Gaps = 14/496 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   N  ++  MI G  +  Q    +L ++  M+ +    + F +  V  +  
Sbjct: 166 ARKLFDRMPERNLVSWTTMISGYASK-QMAKEALGVFGLMRLVEGNLNEFVFTSVLSALV 224

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               ++ G  VH  V K G+ E   V ++L+TMYA+CG L+ +  +F+   +++ ++W++
Sbjct: 225 CPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSA 284

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+GYS+ G + +A++LF +M    F+P E TLV VL +C D+  +  GK   G+++K+ 
Sbjct: 285 LITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSG 344

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            +   Y  +AL+DMY K G    AR+ FD ++  D+V W ++I  Y QNG + EA+ ++ 
Sbjct: 345 YETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYG 404

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           RM+   + P+++T+  VL AC+++ AL+ GK +     + GL  ++            CG
Sbjct: 405 RMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCG 464

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+++ + +F  M   + VSWNAMIS L+ NG   EAL LFE M  EG   +P+ +TF+ V
Sbjct: 465 SLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEG--TKPDHITFVTV 522

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H G+V  G   F++M   F L+P+ EHY+CMVD+ +RAG L+EA +F+E      
Sbjct: 523 LSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDH 582

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
              +   LL AC+   N ++     + L+E+ S  S  YV+ S I+  +    D  ++R 
Sbjct: 583 GMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRR 642

Query: 540 LMREKGVSKTPGCSWI 555
           +M+ +GV K  GCSWI
Sbjct: 643 MMKVRGVRKETGCSWI 658



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 151/463 (32%), Positives = 238/463 (51%), Gaps = 25/463 (5%)

Query: 36  STKTVQQIHTQML-INFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMI 90
           S K  Q +H  ++ I ++   N+L   +I         + A L+F  +   N  ++N +I
Sbjct: 22  SLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLI 81

Query: 91  RGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV-SVHSSVFKI 148
            GL+    K S+  L+L+ +M    + PD  T+P VF + A  L  N     VH    K 
Sbjct: 82  HGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKT 141

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
              +D  V  SL+  Y + G +  ARK+FD + ER+LVSW +MISGY+    AKEA+ +F
Sbjct: 142 ASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVF 201

Query: 209 GRMREEEFLPDEITLVSVLGS--CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           G MR  E   +E    SVL +  C +  D   GK V   VVKN +     + +AL+ MY 
Sbjct: 202 GLMRLVEGNLNEFVFTSVLSALVCPEFVD--SGKQVHCVVVKNGVLEFVSVLNALVTMYA 259

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           KCG L  +  +F+   +K+ +TW+A+IT Y+Q G S++A+ LF++M YAG  P + TL+G
Sbjct: 260 KCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVG 319

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTN 375
           VL AC+ + A++ GK    Y  + G    I+            G   DA K F+ +   +
Sbjct: 320 VLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPD 379

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            V W ++I+    NG+  EAL ++ RM        PN++T   VL AC +   +++G+++
Sbjct: 380 LVLWTSIIAGYVQNGKNEEALSMYGRMQMR--KILPNELTMASVLKACSNLAALEQGKQI 437

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
               +  +GL P+    S +  +YA+ G L E      RM ++
Sbjct: 438 -HARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQR 479



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 171/312 (54%), Gaps = 6/312 (1%)

Query: 34  CPS-TKTVQQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNV 88
           CP    + +Q+H  ++ N    F+   N L+       + NY+ +LF   S  N   ++ 
Sbjct: 225 CPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSA 284

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           +I G + A   +  +LKL+ +M   G  P  FT   V  +C+++ A+  G   H  + K 
Sbjct: 285 LITGYSQAGDSHK-ALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKS 343

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G +   + + +L+ MYA+ G    ARK FD + E DLV W S+I+GY + G  +EA+ ++
Sbjct: 344 GYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMY 403

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
           GRM+  + LP+E+T+ SVL +C +L  L  GK +    +K  +     + SAL  MY KC
Sbjct: 404 GRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKC 463

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G+L     +F  M+ +D+V+WNAMI+  +QNG   EA+ LF  M+  G  PD IT + VL
Sbjct: 464 GSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVL 523

Query: 329 SACASIGALDLG 340
           SAC+ +G +  G
Sbjct: 524 SACSHMGIVKRG 535


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 276/513 (53%), Gaps = 16/513 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL      +    A  +F +++  +   +N MI G      ++  S+KL+  M   G 
Sbjct: 261 NGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQ-LGRHEASVKLFMDMID-GF 318

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            PD  +      +C     L  G  VH  +   G + D    + LI MYA+CG L +A++
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD  + +D V+WNS+I+GY++ GY KE +E F  M+ E   PD +T V +L     L D
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLAD 437

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           +  G+ +   V+K   +    +G++L+D+Y KCG +    +VF  M   D+++WN +I +
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIAS 497

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
                       + N M+  G+ PD+ T++G+L  C+ +     GK +  Y  + G   +
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESN 557

Query: 356 I-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CGS+++ +KVF+ M   + V+W A+ISA    G   +AL  F+ M  
Sbjct: 558 VPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMEL 617

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G    P+ V FI  + AC H+G+V EG R FD M + + L P+ EHY+C+VDL AR+G 
Sbjct: 618 SG--VLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L++A +F+  MP K D  + GALL AC+ + NT+++QRV + +LE+ S ++G YV+ S I
Sbjct: 676 LAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNI 735

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +A L  WD    +R  M+ KG+ K PG SWI I
Sbjct: 736 YATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEI 768



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 244/473 (51%), Gaps = 26/473 (5%)

Query: 14  FTELNDPS--LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF----LLIRIIDLKD 67
           F    +PS   LR  LL  L    +T  ++ +H+ ++ + +         L+ +   +KD
Sbjct: 10  FNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKD 69

Query: 68  FNYASLLFHQISRPNE-YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
              +  +F  IS  N  Y +N +IR LT     ++ +L  Y +M+   L+PD FT+P V 
Sbjct: 70  PISSVSVFRSISPTNNVYLWNSIIRALTHNGL-FTQALGYYTEMREKKLQPDAFTFPSVI 128

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SCA +L L  G  VH    ++G + D ++ ++LI MY+R   LD+AR VF+E+  RD V
Sbjct: 129 NSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSV 188

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNS+ISGY   G+ ++A++++ + R    +PD  T+ SVL +CG L  +  G  V G +
Sbjct: 189 SWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI 248

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            K  +  +  +G+ L+ MY K   L  ARRVF  M  KD VTWN MI  YAQ G    ++
Sbjct: 249 EKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASV 308

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF  M   G  PD +++   + AC   G L +GK+V KY    G   D           
Sbjct: 309 KLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMY 367

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG +  A +VF+     + V+WN++I+    +G   E L  F+ M  E    +P+ VT
Sbjct: 368 AKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME---RKPDSVT 424

Query: 416 FIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           F+ +LS       +++GR +  D++   FG   +    + ++D+YA+ G + +
Sbjct: 425 FVLLLSIFSQLADINQGRGIHCDVI--KFGFEAELIIGNSLLDVYAKCGEMDD 475


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 289/552 (52%), Gaps = 23/552 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           L SLL    ++K   QIH+Q++   +    FL   +++L       +   LLF   S P+
Sbjct: 33  LNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFS--SAPD 90

Query: 83  EYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +    V    L T   ++    K    +  M+R G+ P+++T+  V  +C +  A  HG 
Sbjct: 91  DSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGE 150

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +HS V+K G   +  V  +L+ MYA+C  +  A KVF+E+  R+LVSWN+MI G+ +  
Sbjct: 151 QMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNK 210

Query: 200 YAKEAVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              +A+  F  +  E     DE++  SV  +C + G+L  GK V G  +K  +    Y+ 
Sbjct: 211 LYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYIN 270

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L DMYGKCG      ++F     +DVVTWN MI AY  N    +A   F  M+  G  
Sbjct: 271 NSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSI 330

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD+ +   VL +CA++ AL  G  +     + G   ++            CGS+ DA ++
Sbjct: 331 PDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQI 390

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           FE+    N V W A+I+A   +G A+  + LFE+M +EG   +P+ +TF+ VLSAC H G
Sbjct: 391 FEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREG--IKPDYITFVSVLSACSHTG 448

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            V+EG   F+ M    G+ P  EHY+C+VDL +RAG L  A  F+E MP K D  V GAL
Sbjct: 449 RVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGAL 508

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L AC+   N  + + V   L ++E  N GNYV+   I     M +++ ++R  M   GV 
Sbjct: 509 LSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVR 568

Query: 548 KTPGCSWIGIDD 559
           K PGCSWI I +
Sbjct: 569 KEPGCSWIDIKN 580


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 300/546 (54%), Gaps = 21/546 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNYASL---LFHQISRPNEYA 85
           +LK C +    ++IH  +     Q   F+   +I +   F +  +   LF  +   +  +
Sbjct: 181 VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS 240

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MI GL       + +L +  +M+  G+  D+ T   +   CA L  ++    +H  V
Sbjct: 241 WNAMISGLIQNGNA-AQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYV 299

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K GL+ +  VS++LI MYA+ G L  A+KVF ++  RD+VSWNS+I+ Y +      A 
Sbjct: 300 IKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTAR 359

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSALIDM 264
             F +M+     PD +TLVS+        D    + V GF+++    +    +G+A++DM
Sbjct: 360 GFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDM 419

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKIT 323
           Y K G +  A +VF+ +  KDVV+WN +I+ Y QNGL++EAI ++  M+    +  ++ T
Sbjct: 420 YAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGT 479

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
            + +L+A A +GAL  G  +  +  +  L  D+F           CG + DA+ +F  +P
Sbjct: 480 WVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP 539

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + V WNA+IS    +G   +AL LF  M  EG   +P+ VTFI +LSAC H+GLVDEG
Sbjct: 540 RESSVPWNAIISCHGIHGHGEKALKLFREMQDEG--VKPDHVTFISLLSACSHSGLVDEG 597

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           +  F LM   +G+ P  +HY CMVDL  RAG L  A+DF++ MP   D  + GALLGAC+
Sbjct: 598 KWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACR 656

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++ +     L E++S N G YV+ S I+AN+  W+   K+R+L RE+G+ KTPG 
Sbjct: 657 IHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGW 716

Query: 553 SWIGID 558
           S I ++
Sbjct: 717 SSIEVN 722



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 251/479 (52%), Gaps = 47/479 (9%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL--------LFHQISR 80
           SL   C  T   +++H  ++++   + NF+ IR+++L    YASL         F QI R
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNL----YASLGDVSLSRGTFDQIQR 136

Query: 81  PNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALN 136
            + Y +N MI    +A+ +  H   ++  +YQ+  +   + D +T+P V  +C  L+   
Sbjct: 137 KDVYTWNSMI----SAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV--- 189

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  VFK+G   D  V+ SLI MY+R G +  AR +FD++  RD+ SWN+MISG  
Sbjct: 190 DGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G A +A+++   MR E    D +T+ S+L  C  LGD+     +  +V+K+ ++   +
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +ALI+MY K G L  A++VF  M  +DVV+WN++I AY QN     A   F +M+  G
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG----------LRHDIFC--GSIDDA 364
           + PD +TL+ + S  A        + V  +  +RG             D++   G ID A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVF  +PV + VSWN +IS    NG A EA+ ++ RM +E    + N  T++ +L+A  
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVY-RMMEECREIKLNQGTWVSILAAYA 488

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEAWDFVERMPEK 478
           H G + +G R+         LI  + H      +C++DLY + G L +A     ++P +
Sbjct: 489 HVGALQQGMRIHG------HLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE 541


>gi|357156964|ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Brachypodium distachyon]
          Length = 710

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 285/530 (53%), Gaps = 19/530 (3%)

Query: 43  IHTQ-MLINFIQKPNFL--LIRIIDLKDFNYASLLFHQISRPNEYAFNVMIR-GLTTAWQ 98
           IH + +++     P F   L+ +       YA  +F      + Y +N ++R    +  +
Sbjct: 171 IHARAVVLGIATNPAFATSLLAVAAPCSLAYARRVFDAAPHRDVYMWNTLLRVHAHSHAE 230

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
             S +L LY +M+  G+ PD++TYP V  +CA   A   G + H    +  L  D  V  
Sbjct: 231 PQSSALSLYKRMRAAGVAPDHYTYPIVLPACAAARAPRLGRAAHGDAVRFALAGDCFVHS 290

Query: 159 SLITMYARCGKLDSARKVF--DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           +LI MY + G +  A +VF       R +VSW +M++GY +  +  EA+ +FG +  E  
Sbjct: 291 ALIAMYCQDGDVADAEQVFLGTAGASRTVVSWTAMVAGYVQNCFFGEAIAVFGAVVAEGV 350

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           LP+EITL+S L        L  G+ V GF +K + D N  + +AL+ MYGKCG+++ A+ 
Sbjct: 351 LPNEITLISFLPCLQGQEWLTAGEMVHGFALKLRFDANVPLLNALVAMYGKCGSVLSAKG 410

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +FD M  + +V+WN M+  Y QN    +AI  F RM    V  D +TL+ VLSACA  GA
Sbjct: 411 LFDGMATRTLVSWNTMVAMYEQNSDGVQAIKFFRRMLTEKVGFDCVTLVSVLSACARSGA 470

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L+ GKWV + A   GL +D             CG I  A +VF+ +     VSW+AMISA
Sbjct: 471 LETGKWVHELARSHGLDNDARIGNVLVDMYAKCGEIAYAREVFDSLREPGVVSWSAMISA 530

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G   EAL LF  M  EG   +PN  T   VL AC H+GLVDEG + F+ ++  + +
Sbjct: 531 YANHGEHQEALKLFSLMKGEG--VKPNSFTVTAVLVACGHSGLVDEGLKHFNSIAMEYQM 588

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EHY+CM+D+  RAG L EA++ +  M  + D+ V GA LG C+   N ++++ V  
Sbjct: 589 SPTLEHYACMLDMLGRAGRLVEAYEIIRGMSVQPDKCVWGAFLGGCRLHCNLELAEFVAN 648

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            L +  S++   YV+ + ++    M +D+ +MR  M+E  + KT G S +
Sbjct: 649 DLFQSGSNDVTFYVLMANMYFEAGMLEDAERMRRAMKEMELKKTAGHSSV 698


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 289/549 (52%), Gaps = 19/549 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LS++      +  +QIH  ++      F+   N  +   +     NYA  +F Q+   +
Sbjct: 303 ILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVD 362

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSV 141
             ++N +I G   +  +   SL+L+  + R GL PD FT   V  +C++L  +   G  V
Sbjct: 363 LISWNTVISGCARSGLEEC-SLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K G+  D  VS +LI +Y++ GK++ A  +F      DL SWN+M+ G++     
Sbjct: 422 HTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNY 481

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+ LF  M E     D+IT  +   + G L  L  GK +   V+K +   + ++ S +
Sbjct: 482 REALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGI 541

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG +  AR+VF+ + + D V W  +I+   +NG   +A+  +++M+ AGV PD+
Sbjct: 542 LDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDE 601

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T   ++ AC+ + AL+ GK +     +     D F           CG+I+DA  +F  
Sbjct: 602 YTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRR 661

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   +   WNAMI  LA +G A EAL  F  M   G    P+ VTFIGVLSAC H+GL  
Sbjct: 662 MNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRG--VTPDRVTFIGVLSACSHSGLTS 719

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +  + FD M  ++G+ P+ EHYSC+VD  +RAGH+ EA   V  MP +    +   LL A
Sbjct: 720 DAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNA 779

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+ Q + +  +RV + L  ++ S+S  YV+ S I+A    W+++   R +M+   V K P
Sbjct: 780 CRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEP 839

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 840 GFSWIDMKN 848



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 220/468 (47%), Gaps = 54/468 (11%)

Query: 22  LLREKLL-------SLLKKCPSTKTV----QQIHTQMLINFIQKPNFLLIRIIDLKD--- 67
           LLR  LL       S+L+ C S +      +Q+HT  L   I   +F+   +ID+     
Sbjct: 389 LLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGG 448

Query: 68  -FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
               A LLFH     +  ++N M+ G T +   Y  +L+L+  M   G K D  T+    
Sbjct: 449 KMEEAELLFHNQDGFDLASWNAMMHGFTVS-DNYREALRLFSLMHERGEKADQITFANAA 507

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +   L+ L  G  +H+ V K+    D  V   ++ MY +CG++ SARKVF++I   D V
Sbjct: 508 KAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDV 567

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +W ++ISG  + G  ++A+  + +MR     PDE T  +++ +C  L  L  GK +   +
Sbjct: 568 AWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANI 627

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K     + ++ ++L+DMY KCG +  A  +F  M  + V  WNAMI   AQ+G + EA+
Sbjct: 628 MKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEAL 687

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALK 366
             FN MK  GV PD++T IGVLSAC                S  GL          DA K
Sbjct: 688 NFFNEMKSRGVTPDRVTFIGVLSAC----------------SHSGL--------TSDAYK 723

Query: 367 VFEDMPVTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            F+ M  T  V      ++ ++ AL+  G   EA  +   M  E  A       +  +L+
Sbjct: 724 NFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASA-----TMYRTLLN 778

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEA 468
           AC   G  + G R+ + +   F + P  S  Y  + ++YA A     A
Sbjct: 779 ACRVQGDKETGERVAEKL---FTMDPSDSAAYVLLSNIYAAANQWENA 823



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 181/381 (47%), Gaps = 32/381 (8%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGY 195
           G   H+ +   GL+ D +V+++LITMYA+CG L SARK+FD     +RDLV++N++++ Y
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 196 SKMG------YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +  G         EA  +F  +R+   L    TL  +   C   G     + ++G+ VK 
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  + ++  AL+++Y K   +  AR +FD M  +DVV WN M+ AY + G  +E + LF
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVF 368
           +    +G+ PD +++  +L         +   + V  YA++      +F    D  + V 
Sbjct: 212 SAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATK------LFVCDDDSDVTV- 264

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHAG 427
                     WN  +S+    G   EA+  F  M K   +  P D +T+I +LS      
Sbjct: 265 ----------WNKTLSSYLQAGEGWEAVDCFRDMIK---SRVPCDSLTYIVILSVVASLN 311

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            ++ G+++   +   FG        +  +++Y +AG ++ A     +M E VD I    +
Sbjct: 312 HLELGKQIHGAV-VRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKE-VDLISWNTV 369

Query: 488 LGACQKQKNTDVSQRVMQLLL 508
           +  C +    + S R+   LL
Sbjct: 370 ISGCARSGLEECSLRLFIDLL 390



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 197/438 (44%), Gaps = 54/438 (12%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A +LF ++   +   +NVM++            L L+    R GL+PD          C 
Sbjct: 176 ARVLFDRMPVRDVVLWNVMMKAYVEMGAG-DEVLGLFSAFHRSGLRPD----------CV 224

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           ++  +  GV    +VF+  L++        +  YA         K+F    + D+  WN 
Sbjct: 225 SVRTILMGVG-KKTVFERELEQ--------VRAYAT--------KLFVCDDDSDVTVWNK 267

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
            +S Y + G   EAV+ F  M +     D +T + +L     L  L LGK + G VV+  
Sbjct: 268 TLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG 327

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            D    + ++ I+MY K G++  ARR+F  M   D+++WN +I+  A++GL   ++ LF 
Sbjct: 328 WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 311 RMKYAGVNPDKITLIGVLSACASI-GALDLGKWVDKYASQRGLRHDIFC----------- 358
            +  +G+ PD+ T+  VL AC+S+  +  +G+ V   A + G+  D F            
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKG 447

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G +++A  +F +    +  SWNAM+     +    EAL LF  M + G  A  + +TF  
Sbjct: 448 GKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKA--DQITFAN 505

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEAWDFVE 473
              A      + +G+++  +      +I    HY     S ++D+Y + G +  A     
Sbjct: 506 AAKAAGCLVRLQQGKQIHAV------VIKMRFHYDLFVISGILDMYLKCGEMKSARKVFN 559

Query: 474 RMPEKVDEIVLGALLGAC 491
           ++P   D++    ++  C
Sbjct: 560 QIPSP-DDVAWTTVISGC 576



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 21/205 (10%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD--AMVNKDVVTWNAM 292
           DL+LGK     +V + ++ + Y+ + LI MY KCG+L  AR++FD     ++D+VT+NA+
Sbjct: 28  DLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAI 87

Query: 293 ITAYAQNG------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           + AYA  G       ++EA  +F  ++ + +   + TL  +   C   G+    + +  Y
Sbjct: 88  LAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY 147

Query: 347 ASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
           A + GL+ D+F              I +A  +F+ MPV + V WN M+ A    G   E 
Sbjct: 148 AVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 396 LLLFERMSKEGGAARPNDVTFIGVL 420
           L LF    + G   RP+ V+   +L
Sbjct: 208 LGLFSAFHRSG--LRPDCVSVRTIL 230


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 188/609 (30%), Positives = 313/609 (51%), Gaps = 91/609 (14%)

Query: 31  LKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP-- 81
           LK C   PS    + +H  +  N  +   F+   ++ +         ASL+F +I+R   
Sbjct: 156 LKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGI 215

Query: 82  -NEYAFNVMIRGLTTAWQKYSHSLKLYYQM------KRLGLKPDNFTYPFVFISCANLLA 134
            +  ++N ++          + +L+L+ +M      K    + D  +   +  +CA+L A
Sbjct: 216 DDVISWNSIVAAHVKGSNPRT-ALELFSEMSMIVHEKATNERSDIISIVNILPACASLKA 274

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L     +HS   + G   D  V ++LI  YA+CG ++ A KVF+ +  +D+VSWN+M++G
Sbjct: 275 LPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 195 YSKMGYAKEAVELFGRMREEEFL-----------------------------------PD 219
           Y++ G    A ELF  MR+E                                      P+
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM------------DLNFYMGSALIDMYGK 267
            +T++S+L +C  LG L  G  +  + +K  +              +  + +ALIDMY K
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 268 CGALVPARRVFDAMVNKD--VVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDKIT 323
           C +   AR +FD++  ++  VVTW  MI  YAQ G SN+A+ +F+ M  K   V P+  T
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRH---------------DIF--CGSIDDALK 366
           +  +L ACA + AL +GK +  Y +    RH               D++  CG +D A  
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVT----RHHEYEPSVYFVANCLIDMYSKCGDVDTARN 570

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF+ MP  NEVSW +M+S    +GR  EAL +F++M K G    P+D++F+ +L AC H+
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV--PDDISFLVLLYACSHS 628

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           G+VD+G   FD+M   + ++  +EHY+C++DL AR G L +AW  ++ MP +   ++  A
Sbjct: 629 GMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVA 688

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+   N ++++  +  L+ +++ N G+Y + S I+AN + W D A++R LM++ G+
Sbjct: 689 LLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGI 748

Query: 547 SKTPGCSWI 555
            K PGCSW+
Sbjct: 749 KKRPGCSWV 757



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 146/544 (26%), Positives = 248/544 (45%), Gaps = 95/544 (17%)

Query: 29  SLLKKCPSTKTVQQIHTQML-------------INFIQKPNFLLIRIIDLKDFNYASLL- 74
           SLLK+C S  TV+QIH +++             +     P+   +    L     AS L 
Sbjct: 36  SLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLA 95

Query: 75  ----------FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
                       +++      +N+++R           ++ +  +M R G KPD+FT P+
Sbjct: 96  CGATKDALSVLERVTPSPAVWWNLLVREHIKEGH-LDRAIGVSCRMLRAGTKPDHFTLPY 154

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER- 183
              +C  L +   G ++H  +   G + +  V ++L+ MY+RCG L+ A  VFDEI  + 
Sbjct: 155 ALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKG 214

Query: 184 --DLVSWNSMISGYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLGD 235
             D++SWNS+++ + K    + A+ELF  M      +      D I++V++L +C  L  
Sbjct: 215 IDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKA 274

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT- 294
           L   K +  + ++N    + ++ +ALID Y KCG++  A +VF+ M  KDVV+WNAM+T 
Sbjct: 275 LPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 295 ----------------------------------AYAQNGLSNEAIMLFNRMKYAGVNPD 320
                                              YAQ G S EA+  F +M   G  P+
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------------------DIF-- 357
            +T+I +LSACAS+GAL  G  +  Y+ ++ L                       D++  
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 358 CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
           C S   A  +F+ +P    N V+W  MI   A  G +++AL +F  M  +  A  PN  T
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-CMVDLYARAGHLSEAWDFVER 474
              +L AC H   +  G+++   ++      P     + C++D+Y++ G +  A +  + 
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 475 MPEK 478
           MP++
Sbjct: 575 MPKR 578


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 269/489 (55%), Gaps = 16/489 (3%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF--ISCANLLALNHG 138
           P   +F   I G     +  + +L  +  M R+GL+P++FT+P  F   +CA       G
Sbjct: 74  PTVVSFTAFISGAAQHARPLA-ALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVG 132

Query: 139 VSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
             +H+   + G L  D  VS + + MY + G L  AR++F+E+  R++++WN++++    
Sbjct: 133 PQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVI 192

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G   E  + +  +RE   +P+ +++ +   +C     L LG+   GFVV    D++  +
Sbjct: 193 DGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSV 252

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +A++D YGKC     AR VFD M  ++ V+W +MI AYAQ+G   +A+ ++   +  G 
Sbjct: 253 SNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGE 312

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P    +  VL+ CA +  L+ G+ +   A +  +  +IF           CG ++DA +
Sbjct: 313 EPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQ 372

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF DMP  N V+WNAMI   A  G A  AL +F+ M + GG + PN +T + V++AC   
Sbjct: 373 VFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTS-PNHITLVNVITACSRG 431

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GL  +G  LFD M   FG+ P++EHY+C+VDL  RAG    A++ ++RMP +    V GA
Sbjct: 432 GLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGA 491

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC+    T++ +   + L E++  +SGN+V+ S + A+   W ++  +R  M+  G+
Sbjct: 492 LLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGI 551

Query: 547 SKTPGCSWI 555
            K PGCSWI
Sbjct: 552 KKEPGCSWI 560



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 210/452 (46%), Gaps = 42/452 (9%)

Query: 35  PSTKTV-QQIHTQML-INFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNV 88
           P   TV  QIH   L   ++    F+    +D+         A  LF ++   N  A+N 
Sbjct: 126 PRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNA 185

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           ++       +    + K Y+ ++  G  P+  +    F +CA  + L+ G   H  V   
Sbjct: 186 VMTNAVIDGRPL-ETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTC 244

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G D D  VS++++  Y +C     AR VFD +R R+ VSW SMI  Y++ G  ++A+ ++
Sbjct: 245 GFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVY 304

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
              R     P +  + SVL +C  L  L  G+ +    V++ +D N ++ SAL+DMYGKC
Sbjct: 305 MGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKC 364

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGV 327
           G +  A +VF  M  +++VTWNAMI  YA  G +  A+ +F+ M +  G +P+ ITL+ V
Sbjct: 365 GGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNV 424

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALA 387
           ++AC+  G    G             +++F    D   + F   P T    +  ++  L 
Sbjct: 425 ITACSRGGLTKDG-------------YELF----DTMRERFGVEPRTEH--YACVVDLLG 465

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR----RLFDLMSSSF 443
             G    A  + +RM       RP+   +  +L AC   G  + GR    +LF+L     
Sbjct: 466 RAGMEERAYEIIQRMPM-----RPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDS 520

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           G      ++  + ++ A AG  +EA D  + M
Sbjct: 521 G------NHVLLSNMLASAGRWAEATDVRKEM 546


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 302/546 (55%), Gaps = 21/546 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNYASL---LFHQISRPNEYA 85
           +LK C +    ++IH        Q   F+   +I +   F +  +   LF  +   +  +
Sbjct: 224 VLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 283

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MI GL       + +L +  +M+  G+K +  T   +   C  L  ++  + +H  V
Sbjct: 284 WNAMISGLIQNGNA-AQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYV 342

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K GL+ D  VS++LI MYA+ G L+ ARK F ++   D+VSWNS+I+ Y +      A 
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDM 264
             F +M+   F PD +TLVS+        D    + V GF+++    + +  +G+A++DM
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKIT 323
           Y K G L  A +VF+ ++ KDV++WN +IT YAQNGL++EAI ++  M+    + P++ T
Sbjct: 463 YAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGT 522

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
            + +L A A +GAL  G  +     +  L  D+F           CG + DA+ +F  +P
Sbjct: 523 WVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP 582

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             + V+WNA+IS    +G A + L LF  M  EG   +P+ VTF+ +LSAC H+G V+EG
Sbjct: 583 QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEG--VKPDHVTFVSLLSACSHSGFVEEG 640

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           +  F LM   +G+ P  +HY CMVDL  RAG+L  A+ F++ MP + D  + GALLGAC+
Sbjct: 641 KWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACR 699

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++ +     L E++S N G YV+ S I+AN+  W+   K+R+L RE+G+ KTPG 
Sbjct: 700 IHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGW 759

Query: 553 SWIGID 558
           S I ++
Sbjct: 760 STIEVN 765



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 244/468 (52%), Gaps = 37/468 (7%)

Query: 36  STKT--VQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVM 89
           STKT   + +H  +++    +  F+  R+++L     D + +   F QI + + Y +N M
Sbjct: 129 STKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSM 188

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           I         +  ++  +YQ+  +  ++PD +T+P V  +C  L+    G  +H   FK+
Sbjct: 189 ISAYVHNGH-FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKL 244

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G   +  V+ SLI MY+R G    AR +FD++  RD+ SWN+MISG  + G A +A+++ 
Sbjct: 245 GFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVL 304

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             MR E    + +T+VS+L  C  LGD+     +  +V+K+ ++ + ++ +ALI+MY K 
Sbjct: 305 DEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKF 364

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G L  AR+ F  M   DVV+WN++I AY QN     A   F +M+  G  PD +TL+ + 
Sbjct: 365 GNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLA 424

Query: 329 SACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNE 376
           S  A        + V  +  +RG L  D+  G+           +D A KVFE + V + 
Sbjct: 425 SIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDV 484

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           +SWN +I+  A NG A EA+ ++ +M +E     PN  T++ +L A  H G + +G R+ 
Sbjct: 485 ISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI- 542

Query: 437 DLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDFVERMPEK 478
                  G + K+  +      +C++D+Y + G L +A     ++P++
Sbjct: 543 ------HGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 283/548 (51%), Gaps = 21/548 (3%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           ++  C  ++ +   +Q+H  ++    +K  F    ++D+       + AS++F ++   +
Sbjct: 208 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 267

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N +I G       +  +++L  QMK  GL P+ F    +  +CA   A + G  +H
Sbjct: 268 VVSWNALISGCVLNGHDH-RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 326

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K   D DD++   L+ MYA+   LD A KVFD +  RDL+ WN++ISG S  G   
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 386

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA  +F  +R+E    +  TL +VL S   L      + V     K     + ++ + LI
Sbjct: 387 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 446

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KC  L  A RVF+   + D++   +MITA +Q      AI LF  M   G+ PD  
Sbjct: 447 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 506

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            L  +L+ACAS+ A + GK V  +  +R    D F           CGSI+DA   F  +
Sbjct: 507 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 566

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P    VSW+AMI  LA +G    AL LF RM  EG    PN +T   VL AC HAGLVDE
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG--INPNHITMTSVLCACNHAGLVDE 624

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +R F+ M   FG+    EHYSCM+DL  RAG L +A + V  MP + +  V GALLGA 
Sbjct: 625 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS 684

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  K+ ++ +   + L  +E   SG +V+ +  +A+  MW++ AK+R LM++  + K P 
Sbjct: 685 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 744

Query: 552 CSWIGIDD 559
            SW+ + D
Sbjct: 745 MSWVEVKD 752



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 253/533 (47%), Gaps = 58/533 (10%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQI-SRPNEY 84
           +LK  P  +   Q+H   +        F+   ++ +   F +   A  +F +  S  N  
Sbjct: 109 VLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAV 168

Query: 85  AFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++N    GL +A+ K      +++++ +M   G++P  F +  V  +C     ++ G  V
Sbjct: 169 SWN----GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V ++G ++D   +++L+ MY + G++D A  +F+++ + D+VSWN++ISG    G+ 
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+EL  +M+    +P+   L S+L +C   G   LG+ + GF++K   D + Y+G  L
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K   L  A +VFD M ++D++ WNA+I+  +  G  +EA  +F  ++  G+  ++
Sbjct: 345 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 404

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL  VL + AS+ A    + V   A + G   D             C  + DA++VFE+
Sbjct: 405 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 464

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + ++  +MI+AL+       A+ LF  M ++G    P+      +L+AC      +
Sbjct: 465 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG--LEPDPFVLSSLLNACASLSAYE 522

Query: 431 EGRRLF------DLMSSSF------------GLIPKSE------------HYSCMVDLYA 460
           +G+++         MS +F            G I  +E             +S M+   A
Sbjct: 523 QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLA 582

Query: 461 RAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           + GH   A +   RM ++    + I + ++L AC      D ++R    + E+
Sbjct: 583 QHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 217/452 (48%), Gaps = 23/452 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F +I  P   +++ ++   +      S +++ ++ M+  G+  + F  P V + C 
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRS-AIQAFHGMRAEGVCCNEFALPVV-LKCV 113

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI-RERDLVSWN 189
               L  G  VH+     G   D  V+++L+ MY   G +D AR+VFDE   ER+ VSWN
Sbjct: 114 PDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWN 171

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
            ++S Y K     +A+++FG M      P E     V+ +C    ++  G+ V   VV+ 
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM 231

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             + + +  +AL+DMY K G +  A  +F+ M + DVV+WNA+I+    NG  + AI L 
Sbjct: 232 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL 291

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--------- 360
            +MK +G+ P+   L  +L ACA  GA DLG+ +  +  +     D + G          
Sbjct: 292 LQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKN 351

Query: 361 --IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
             +DDA+KVF+ M   + + WNA+IS  +  GR  EA  +F  + KEG     N  T   
Sbjct: 352 HFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGV--NRTTLAA 409

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL +          R++  L +   G I  +   + ++D Y +   LS+A    E     
Sbjct: 410 VLKSTASLEAASATRQVHAL-AEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSG 468

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
            D I + +++ A  +    D  +  ++L +E+
Sbjct: 469 -DIIAVTSMITALSQ---CDHGEGAIKLFMEM 496



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 186/379 (49%), Gaps = 25/379 (6%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +H+++ K G      + + LI+ Y++C +   AR+VFDEI +   VSW+S+++
Sbjct: 19  ALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVT 76

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            YS  G  + A++ F  MR E    +E  L  VL  C  + D  LG  V    +      
Sbjct: 77  AYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVL-KC--VPDAQLGAQVHAMAMATGFGS 133

Query: 254 NFYMGSALIDMYGKCGALVPARRVFD-AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           + ++ +AL+ MYG  G +  ARRVFD A   ++ V+WN +++AY +N    +AI +F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
            ++G+ P +     V++AC     +D G+ V     + G   D+F            G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 253

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           D A  +FE MP ++ VSWNA+IS    NG  H A+ L  +M   G    PN      +L 
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG--LVPNVFMLSSILK 311

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKV 479
           AC  AG  D GR++   M  +      S+ Y    +VD+YA+   L +A    + M  + 
Sbjct: 312 ACAGAGAFDLGRQIHGFMIKANA---DSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR- 367

Query: 480 DEIVLGALLGACQKQKNTD 498
           D I+  AL+  C      D
Sbjct: 368 DLILWNALISGCSHGGRHD 386



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 184/379 (48%), Gaps = 21/379 (5%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNY----ASLLFHQIS 79
           L S+LK C         +QIH  M+       +++ + ++D+   N+    A  +F  +S
Sbjct: 306 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 365

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +   +N +I G +    ++  +  ++Y +++ GL  +  T   V  S A+L A +   
Sbjct: 366 HRDLILWNALISGCSHG-GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATR 424

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   KIG   D HV + LI  Y +C  L  A +VF+E    D+++  SMI+  S+  
Sbjct: 425 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 484

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + + A++LF  M  +   PD   L S+L +C  L     GK V   ++K +   + + G+
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+  Y KCG++  A   F ++  + VV+W+AMI   AQ+G    A+ LF RM   G+NP
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604

Query: 320 DKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIF--CGSIDDALKV 367
           + IT+  VL AC   G +D  K           +D+         D+    G +DDA+++
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMEL 664

Query: 368 FEDMPV-TNEVSWNAMISA 385
              MP   N   W A++ A
Sbjct: 665 VNSMPFQANASVWGALLGA 683


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 293/543 (53%), Gaps = 24/543 (4%)

Query: 34  CPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVM 89
           C + K +  +H   +I+      F+   ++DL        YA  +F  +   +   +N M
Sbjct: 121 CSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTM 180

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           I GL      +  S++L+ +M   G++ D+ T   V  + A L  L  G+ +     KIG
Sbjct: 181 INGLVKNCC-FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIG 239

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
               D+V   LI++Y++CG +++AR +F  I   DL+++N+MISG++  G  + +V+LF 
Sbjct: 240 FGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLF- 298

Query: 210 RMREEEFLPDEI---TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
             RE  F  + +   T+V ++      G L L   + GF VK+ + LN  + +A   +Y 
Sbjct: 299 --RELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYN 356

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           K   +  AR +FD    K VV WNAMI+ Y QNG +  AI LF  M      P+ +T+  
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITT 416

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
           +LSACA +G+L  GKWV        L  +I+           CG+I +A ++F+ M   N
Sbjct: 417 ILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKN 476

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            V+WN MI     +G  HEAL L+  M   G    P+ VTF+ VL AC HAGLV EG  +
Sbjct: 477 TVTWNTMIFGYGLHGYGHEALKLYNEMLHLG--YNPSAVTFLSVLYACSHAGLVGEGEEI 534

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           F  M + + + P  EHY+CMVD+  R+G L +A +F+++MP +    V G LLGAC   K
Sbjct: 535 FHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHK 594

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +TD+++   + L E++  + G YV+ S I++  + +  +A +R +++++ ++K+PGC+ I
Sbjct: 595 DTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLI 654

Query: 556 GID 558
            ++
Sbjct: 655 EVN 657



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 234/473 (49%), Gaps = 23/473 (4%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINF----IQKPNFLLIRIIDLKDFNYASLLFHQ 77
           L R  L SL+ K  +   + Q H Q ++N     +     L  ++ D     +A  LF  
Sbjct: 10  LSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFS 69

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALN 136
           + +P+ + FNV++RG +      S S+ LY  ++R   L PDNFTY F   +C+N     
Sbjct: 70  VPKPDIFLFNVLVRGFSLN-DSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN---DK 125

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
           H + +H+     G   +  V  +L+ +Y +  ++  ARKVFD + ERD V WN+MI+G  
Sbjct: 126 HLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLV 185

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           K     ++++LF  M  +    D  T+ +VL +  +L +L +G  ++   +K       Y
Sbjct: 186 KNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDY 245

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + + LI +Y KCG +  AR +F  +   D++ +NAMI+ +  NG +  ++ LF  + ++G
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDAL 365
                 T++G++   +  G L L   +  +  + G+  +    +           ID A 
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +F++ P    V+WNAMIS    NG    A+ LF+ M K      PN VT   +LSAC  
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKT--EFTPNAVTITTILSACAQ 423

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            G +  G+ +  L+ S   L P     + +VD+YA+ G++SEAW   + M EK
Sbjct: 424 LGSLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK 475


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 303/605 (50%), Gaps = 82/605 (13%)

Query: 31  LKKCPSTKT---VQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNE 83
           LK C   +    V+++H +++        FL   +I+    L D   A  +F  I +PN 
Sbjct: 12  LKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL 71

Query: 84  YAFNVMIRGLT--------------------TAWQKY----------SHSLKLYYQMKRL 113
           +++N ++   +                     +W             S S+++Y  M + 
Sbjct: 72  FSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKD 131

Query: 114 G-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           G +  +  T+  + I  +N   ++ G  +H  +FK G      V   L+ MYA+ G ++ 
Sbjct: 132 GSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIND 191

Query: 173 ARKVFDEIRERDLV-------------------------------SWNSMISGYSKMGYA 201
           A ++F+EI E+++V                               SW ++I+G ++ G  
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KEAV+ F  M  E F  D+ T  SVL +CG    L  GK +  ++++     N ++GSAL
Sbjct: 252 KEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSAL 311

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KC  +  A  VF  M +K+V++W AM+  Y QNG S EA+ +F  M+   ++PD 
Sbjct: 312 LDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDD 371

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL  V+S+CA++ +L+ G      A   GL   +            CGS++ A ++F +
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHE 431

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M + +EVSW A++S  A  G+A+E + LFE M   G    P+ VTF+GVLSAC  AGLV+
Sbjct: 432 MKIRDEVSWTALVSGYAQFGKANETISLFETMLAHG--IVPDGVTFVGVLSACSRAGLVE 489

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +G   F+ M     + P  +HY+CM+DL +RAG L EA +F+ +MP   D I    LL +
Sbjct: 490 KGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSS 549

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   N ++ +   + L ++E  N  +Y++ S I+A    WDD AK+R  MRE GV K P
Sbjct: 550 CRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEP 609

Query: 551 GCSWI 555
           G SWI
Sbjct: 610 GHSWI 614


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/548 (32%), Positives = 295/548 (53%), Gaps = 35/548 (6%)

Query: 31  LKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL--------LFHQIS 79
           LK C   + +   ++IH Q+    ++ P+F  + +  L D  YA          +F  I+
Sbjct: 161 LKACTEVQDLDNGKKIHCQI----VKVPSFDNVVLTGLLDM-YAKCGEIKSSYKVFEDIT 215

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N   +  MI G       Y   L L+ +M+   +  + +TY  + ++C  L AL+ G 
Sbjct: 216 LRNVVCWTSMIAGYVKN-DLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGK 274

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
             H  + K G++    +  SL+ MY +CG + +AR+VF+E    DLV W +MI GY+  G
Sbjct: 275 WFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNG 334

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMG 258
              EA+ LF +M      P+ +T+ SVL  CG +G+L LG+ + G  +K  + D N  + 
Sbjct: 335 SVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTN--VA 392

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+ MY KC     A+ VF+    KD+V WN++I+ ++QNG  +EA+ LF+RM    V 
Sbjct: 393 NALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVM 452

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDAL 365
           P+ +T+  + SACAS+G+L +G  +  Y+ + G              D +  CG  + A 
Sbjct: 453 PNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESAR 512

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +F+ +   N ++W+AMI      G    +L LFE M K+    +PN+ TF  VLSAC H
Sbjct: 513 LIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKK--QQKPNESTFTSVLSACSH 570

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            G+V+EG++ F  M   +   P ++HY+CMVD+ ARAG L +A D +E+MP + D    G
Sbjct: 571 TGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFG 630

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           A L  C      D+ + V++ +L++   ++  YV+ S ++A+   W  + ++R LM+++G
Sbjct: 631 AFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRG 690

Query: 546 VSKTPGCS 553
           +SK  G S
Sbjct: 691 LSKIAGHS 698



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 164/520 (31%), Positives = 264/520 (50%), Gaps = 26/520 (5%)

Query: 10  RHLAFTELNDPSLLR----EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           + L   E ND S L          LL KC +  +++Q H  +  N +     +  +++ L
Sbjct: 38  QELNLPEDNDESSLNYAASRPCFLLLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVSL 97

Query: 66  -KDFNY---ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
              F Y   A L+F QI  P+ Y + V++R      + +   +K Y  + + G   D+  
Sbjct: 98  YGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESF-EVIKFYDLLMKHGFGYDDIV 156

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +     +C  +  L++G  +H  + K+    D+ V   L+ MYA+CG++ S+ KVF++I 
Sbjct: 157 FSKALKACTEVQDLDNGKKIHCQIVKVP-SFDNVVLTGLLDMYAKCGEIKSSYKVFEDIT 215

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            R++V W SMI+GY K    +E + LF RMRE   L +E T  +++ +C  L  L  GKW
Sbjct: 216 LRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKW 275

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
             G ++K+ ++L+  + ++L+DMY KCG +  ARRVF+   + D+V W AMI  Y  NG 
Sbjct: 276 FHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGS 335

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
            NEA+ LF +M   G+ P+ +T+  VLS C  +G L+LG+ +   + + G+         
Sbjct: 336 VNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNVANAL 395

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 C    DA  VFE     + V+WN++IS  + NG  HEAL LF RM+ E  +  P
Sbjct: 396 VHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTE--SVMP 453

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAW 469
           N VT   + SAC   G +  G  L    S   G +  S  +  + ++D YA+ G    A 
Sbjct: 454 NGVTVASLFSACASLGSLAIGSSL-HAYSVKLGFLASSSVHVGTALLDFYAKCGDAESAR 512

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
              + + EK + I   A++G   KQ +T  S  + + +L+
Sbjct: 513 LIFDTIEEK-NTITWSAMIGGYGKQGDTKGSLELFEEMLK 551


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 295/542 (54%), Gaps = 57/542 (10%)

Query: 36  STKT--VQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVM 89
           STKT   + +H  +++    +  F+  R+++L     D + +   F QI + + YA+N M
Sbjct: 29  STKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSM 88

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           I         +  ++  +YQ+  +  ++PD +T+P V  +C  L+    G  +H   FK+
Sbjct: 89  ISAYVHNGH-FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKL 144

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G   +  V+ SLI MY+R G    AR +FD++  RD+ SWN+MISG  + G A +A+++ 
Sbjct: 145 GFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVL 204

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             MR E    + +T+VS+L                                  +DMY K 
Sbjct: 205 DEMRLEGIKMNFVTVVSIL-------------------------------PVFVDMYAKL 233

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGV 327
           G L  A +VF+ +  KDV++WN +IT YAQNGL++EAI ++  M+    + P++ T + +
Sbjct: 234 GLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSI 293

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE 376
           L A A +GAL  G  +     +  L  D+F           CG + DA+ +F  +P  + 
Sbjct: 294 LPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS 353

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           V+WNA+IS    +G A + L LF  M  EG   +P+ VTF+ +LSAC H+G V+EG+  F
Sbjct: 354 VTWNAIISCHGIHGHAEKTLKLFGEMLDEG--VKPDHVTFVSLLSACSHSGFVEEGKWCF 411

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
            LM   +G+ P  +HY CMVDL  RAG+L  A+DF++ MP + D  + GALLGAC+   N
Sbjct: 412 RLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN 470

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
            ++ +     L E++S N G YV+ S I+AN+  W+   K+R+L RE+G+ KTPG S I 
Sbjct: 471 IELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 530

Query: 557 ID 558
           ++
Sbjct: 531 VN 532


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 178/471 (37%), Positives = 254/471 (53%), Gaps = 55/471 (11%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-----RKVFDEIRERDLVSWN 189
           +N    VH+ +F+ GL++   V   L+       KLD       R VF ++   +   W 
Sbjct: 52  INQVKQVHAHIFRKGLEQCCFVLAKLLRTLT---KLDVPMDPYPRLVFQQVEYPNPFLWT 108

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG-FVVK 248
           ++I GY+  G   E+V L+  MR +   P   T  ++L +C    D+ LG+ V    ++ 
Sbjct: 109 ALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILI 168

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN------------------ 290
                + Y+G+ LIDMY KCG L    RVFD M+++DV++W                   
Sbjct: 169 GGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASEL 228

Query: 291 -------------AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
                        AM+T YAQN    EA+ +F RM+ AGV  D++TL+GV+SACA +GA 
Sbjct: 229 FDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAA 288

Query: 338 DLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFEDMPVTNEVSWNAMIS 384
               WV   A Q G              D++  CGS++DA KVFE M   N  S+++MI 
Sbjct: 289 KYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIV 348

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
             A +G A  A+ LF+ M K     +PN VTFIGVL+AC HAG+V++G++LF +M    G
Sbjct: 349 GFAMHGLAGAAMELFDEMLKT--EIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHG 406

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           + P  +HY+CMVDL  RAG L EA + V+ MP      V GALLGAC+   N D++Q   
Sbjct: 407 VAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAA 466

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             L E+E +  GNY++ S I+A+   WDD +K+R LMR KG+ K PGCSW+
Sbjct: 467 SHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWV 517



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 243/508 (47%), Gaps = 79/508 (15%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DL 65
           + F+   +  +L  +L+S+L  C     V+Q+H  +    +++  F+L +++      D+
Sbjct: 27  IPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDV 86

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
               Y  L+F Q+  PN + +  +IRG       +  S+ LY  M+R G+ P +FT+  +
Sbjct: 87  PMDPYPRLVFQQVEYPNPFLWTALIRGYALQ-GPFMESVLLYNSMRRQGIGPVSFTFTAL 145

Query: 126 FISCANLLALNHGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
             +C+  L +N G  VH+    I G   D +V ++LI MY +CG L    +VFDE+ +RD
Sbjct: 146 LKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRD 205

Query: 185 LVSWNSMISGYSKM--------------------------GYA-----KEAVELFGRMRE 213
           ++SW S+I  Y+K+                          GYA     +EA+E+F RM+ 
Sbjct: 206 VISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQA 265

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGSALIDMYGKCGAL 271
                DE+TLV V+ +C  LG      WV     ++      N  +GSALIDMY KCG++
Sbjct: 266 AGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSV 325

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
             A +VF+ M  ++V ++++MI  +A +GL+  A+ LF+ M    + P+++T IGVL+AC
Sbjct: 326 EDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTAC 385

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  G ++ G+ +     +        C  +             +E  +  M+  L   GR
Sbjct: 386 SHAGMVEQGQQLFAMMEE--------CHGV-----------APSEDHYACMVDLLGRAGR 426

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR----RLFDLMSSSFGLIP 447
             EAL L + M        P+   +  +L AC   G  D  +     LF+L  +  G   
Sbjct: 427 LEEALNLVKMMP-----MNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIG--- 478

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERM 475
              +Y  + ++YA AG     WD V ++
Sbjct: 479 ---NYILLSNIYASAGR----WDDVSKV 499



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 157/345 (45%), Gaps = 16/345 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           L+ +  KC       ++  +ML   +     L++    + +   AS LF  +   +  A+
Sbjct: 181 LIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAW 240

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
             M+ G      +   +L+++ +M+  G+K D  T   V  +CA L A  +   V     
Sbjct: 241 TAMVTGYAQN-ARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAE 299

Query: 147 KIGLDEDDH--VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + G     +  V  +LI MYA+CG ++ A KVF+ + ER++ S++SMI G++  G A  A
Sbjct: 300 QSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAA 359

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-----EGFVVKNKMDLNFYMGS 259
           +ELF  M + E  P+ +T + VL +C   G +  G+ +     E   V    D      +
Sbjct: 360 MELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY----A 415

Query: 260 ALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            ++D+ G+ G L  A  +   M +N     W A++ A   +G  + A +  + +    + 
Sbjct: 416 CMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHL--FELE 473

Query: 319 PDKITLIGVLSAC-ASIGALDLGKWVDKYASQRGLRHDIFCGSID 362
           P+ I    +LS   AS G  D    V K    +GL+ +  C  ++
Sbjct: 474 PNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVE 518


>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like, partial [Cucumis sativus]
          Length = 472

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 171/467 (36%), Positives = 260/467 (55%), Gaps = 24/467 (5%)

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           L +  ++FT+ +   +C  L     G+ +H+ + K G   D  + +SL+  Y   G + S
Sbjct: 12  LPISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSS 71

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A  +FD I + D+VSW S+ISG SK+G+ KEA+  F  M      P+  TLV+ L +C  
Sbjct: 72  ASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSMNVR---PNSTTLVTALSTCSS 128

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L  L LGK + G  ++   + N  + +AL+D Y +C  L  A  +F+ M  +DVV+W  M
Sbjct: 129 LRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTM 188

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           I  YAQ+GL  EA+ +F  M + G   P++ TL+ VLSAC+SI AL LG+WV  Y + R 
Sbjct: 189 IGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSR- 247

Query: 352 LRHDIF---------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
             HD+                CG+++ A+ +F+     + VSW+ +IS LA NG   +A 
Sbjct: 248 --HDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAF 305

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
           +LF  M   G    P+DVTF+G+LSAC H GL+++G  +F+ M   + + P+  HY+CMV
Sbjct: 306 VLFSLMLVHG--ISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMV 363

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D+Y +AG L EA  F++ MP + +  V GALL ACQ   N    ++V + LL  +    G
Sbjct: 364 DMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLGSKGVTVG 423

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
            + + S  +A    W+D+  +R  MR +G+ K  G SWI + D   S
Sbjct: 424 TFALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSSYS 470



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 209/384 (54%), Gaps = 30/384 (7%)

Query: 31  LKKCPSTKTVQ---QIHTQMLIN------FIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           LK C      Q   +IH  ++ +      FIQ  + L   I+D  D + ASL+F  I  P
Sbjct: 25  LKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQN-SLLHFYILD-GDVSSASLIFDSIPDP 82

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I GL+    K     +   +   + ++P++ T      +C++L  L  G ++
Sbjct: 83  DVVSWTSIISGLS----KLGFEKEALSKFLSMNVRPNSTTLVTALSTCSSLRCLKLGKAI 138

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    +   +E+  + ++L+  Y RC  L SA  +F+++ +RD+VSW +MI GY++ G  
Sbjct: 139 HGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLC 198

Query: 202 KEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV-VKNKMDLNFYMGS 259
           +EAV +F  M    E +P+E TLV+VL +C  +  L LG+WV  ++  ++ + ++  +G+
Sbjct: 199 EEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGN 258

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           ALI+MY KCG +  A  +F A  +KD+V+W+ +I+  A NGL  +A +LF+ M   G++P
Sbjct: 259 ALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISP 318

Query: 320 DKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKV 367
           D +T +G+LSAC+  G ++ G  V     D Y     +RH     D++   G +D+A   
Sbjct: 319 DDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACMVDMYGKAGLLDEAEAF 378

Query: 368 FEDMPVTNEVS-WNAMISALAFNG 390
            ++MP+  E   W A++ A   +G
Sbjct: 379 IKEMPMEAEGPVWGALLHACQLHG 402


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 277/527 (52%), Gaps = 46/527 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + RP     +  +  L+ A   +   L+ +  M R G    +   P VF SCA   
Sbjct: 75  LFDAVPRPAPALCSTFLSSLSRA-SSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTA 133

Query: 134 ALNHGVSVHSSVFKIGL------------------DEDDHVS-------------HSLIT 162
           +   G  VH      GL                  D +  VS             + LIT
Sbjct: 134 SSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLIT 193

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
            Y++ G +D AR++FD +  R   SWNSMI+ Y+  G  +EA+ LF RM  E   P+ IT
Sbjct: 194 GYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAIT 253

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           + SV   C   GDL  GK V   + ++ +  N  + +AL++MY KC A+  ARR FD M 
Sbjct: 254 ITSVFSICAKSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMS 312

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +DVV W+ MI  YAQNG   E++ LF RMK     P+++TL+GV+SACA +G+ +L + 
Sbjct: 313 QRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQ 372

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  YA  + L    +           CG +  A  VF  M     ++WN+MI  LA NG 
Sbjct: 373 IGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGF 432

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A +A+ L+E+M++ G   +PN++TF+ +L+AC HAGLVD+G   F+ M     + P+ EH
Sbjct: 433 AEDAISLYEKMAENG--VQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEH 490

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
            +C+VDL  ++G L EA+ F+  M  + + ++   LL +C+   + ++++   + LL +E
Sbjct: 491 CACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME 550

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             NS  YV+ S I+A+  +W D+ ++R LMR K V K    SWI +D
Sbjct: 551 PDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLD 597



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 206/400 (51%), Gaps = 20/400 (5%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+       D + A  LF  + R    ++N MI       + +  +L L+ +M   G 
Sbjct: 189 NCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGE-FREALTLFDRMLSEGA 247

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +P+  T   VF  CA    L+ G  V   + +  L ++  V  +L+ MY +C  +D AR+
Sbjct: 248 RPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARR 306

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
            FD + +RD+V+W++MI+GY++ G   E++ELF RM+  +  P+E+TLV V+ +C  LG 
Sbjct: 307 EFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGS 366

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
             L + +  +    ++ L  Y+GSALIDMY +CG +  AR VF  M  K V+TWN+MI  
Sbjct: 367 DELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRG 426

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG----------KWVDK 345
            A NG + +AI L+ +M   GV P++IT + +L+AC   G +D G            V  
Sbjct: 427 LAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSP 486

Query: 346 YASQRGLRHDIFC--GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
                    D+ C  G + +A K   DM V  N V W  ++S+     RAH  + L +  
Sbjct: 487 QVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSC----RAHADVELAKLA 542

Query: 403 SKEGGAARPNDVTFIGVLSAC-VHAGLVDEGRRLFDLMSS 441
           S++  A  P++ +   +LS     AGL  + R + DLM S
Sbjct: 543 SRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRS 582


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 283/548 (51%), Gaps = 21/548 (3%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           ++  C  ++ +   +Q+H  ++    +K  F    ++D+       + AS++F ++   +
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 174

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++N +I G       +  +++L  QMK  GL P+ F    +  +CA   A + G  +H
Sbjct: 175 VVSWNALISGCVLNGHDH-RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 233

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K   D DD++   L+ MYA+   LD A KVFD +  RDL+ WN++ISG S  G   
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EA  +F  +R+E    +  TL +VL S   L      + V     K     + ++ + LI
Sbjct: 294 EAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLI 353

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y KC  L  A RVF+   + D++   +MITA +Q      AI LF  M   G+ PD  
Sbjct: 354 DSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 413

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            L  +L+ACAS+ A + GK V  +  +R    D F           CGSI+DA   F  +
Sbjct: 414 VLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL 473

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P    VSW+AMI  LA +G    AL LF RM  EG    PN +T   VL AC HAGLVDE
Sbjct: 474 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG--INPNHITMTSVLCACNHAGLVDE 531

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            +R F+ M   FG+    EHYSCM+DL  RAG L +A + V  MP + +  V GALLGA 
Sbjct: 532 AKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGAS 591

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  K+ ++ +   + L  +E   SG +V+ +  +A+  MW++ AK+R LM++  + K P 
Sbjct: 592 RVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 651

Query: 552 CSWIGIDD 559
            SW+ + D
Sbjct: 652 MSWVEVKD 659



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/533 (25%), Positives = 253/533 (47%), Gaps = 58/533 (10%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQI-SRPNEY 84
           +LK  P  +   Q+H   +        F+   ++ +   F +   A  +F +  S  N  
Sbjct: 16  VLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAV 75

Query: 85  AFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++N    GL +A+ K      +++++ +M   G++P  F +  V  +C     ++ G  V
Sbjct: 76  SWN----GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 131

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V ++G ++D   +++L+ MY + G++D A  +F+++ + D+VSWN++ISG    G+ 
Sbjct: 132 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 191

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+EL  +M+    +P+   L S+L +C   G   LG+ + GF++K   D + Y+G  L
Sbjct: 192 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 251

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K   L  A +VFD M ++D++ WNA+I+  +  G  +EA  +F  ++  G+  ++
Sbjct: 252 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 311

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL  VL + AS+ A    + V   A + G   D             C  + DA++VFE+
Sbjct: 312 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 371

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + ++  +MI+AL+       A+ LF  M ++G    P+      +L+AC      +
Sbjct: 372 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG--LEPDPFVLSSLLNACASLSAYE 429

Query: 431 EGRRLF------DLMSSSF------------GLIPKSE------------HYSCMVDLYA 460
           +G+++         MS +F            G I  +E             +S M+   A
Sbjct: 430 QGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLA 489

Query: 461 RAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           + GH   A +   RM ++    + I + ++L AC      D ++R    + E+
Sbjct: 490 QHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 542



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 199/413 (48%), Gaps = 22/413 (5%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+  G+  + F  P V + C     L  G  VH+     G   D  V+++L+ MY   G 
Sbjct: 1   MRAEGVCCNEFALPVV-LKCVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 170 LDSARKVFDEI-RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
           +D AR+VFDE   ER+ VSWN ++S Y K     +A+++FG M      P E     V+ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           +C    ++  G+ V   VV+   + + +  +AL+DMY K G +  A  +F+ M + DVV+
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+I+    NG  + AI L  +MK +G+ P+   L  +L ACA  GA DLG+ +  +  
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 349 QRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +     D + G            +DDA+KVF+ M   + + WNA+IS  +  GR  EA  
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 297

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           +F  + KEG     N  T   VL +          R++  L +   G I  +   + ++D
Sbjct: 298 IFYGLRKEGLGV--NRTTLAAVLKSTASLEAASATRQVHAL-AEKIGFIFDAHVVNGLID 354

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
            Y +   LS+A    E      D I + +++ A  +    D  +  ++L +E+
Sbjct: 355 SYWKCSCLSDAIRVFEECSSG-DIIAVTSMITALSQ---CDHGEGAIKLFMEM 403



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 184/379 (48%), Gaps = 21/379 (5%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNY----ASLLFHQIS 79
           L S+LK C         +QIH  M+       +++ + ++D+   N+    A  +F  +S
Sbjct: 213 LSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS 272

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +   +N +I G +    ++  +  ++Y +++ GL  +  T   V  S A+L A +   
Sbjct: 273 HRDLILWNALISGCSHG-GRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATR 331

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   KIG   D HV + LI  Y +C  L  A +VF+E    D+++  SMI+  S+  
Sbjct: 332 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 391

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + + A++LF  M  +   PD   L S+L +C  L     GK V   ++K +   + + G+
Sbjct: 392 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 451

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+  Y KCG++  A   F ++  + VV+W+AMI   AQ+G    A+ LF RM   G+NP
Sbjct: 452 ALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINP 511

Query: 320 DKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIF--CGSIDDALKV 367
           + IT+  VL AC   G +D  K           +D+         D+    G +DDA+++
Sbjct: 512 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMEL 571

Query: 368 FEDMPV-TNEVSWNAMISA 385
              MP   N   W A++ A
Sbjct: 572 VNSMPFQANASVWGALLGA 590


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/509 (35%), Positives = 279/509 (54%), Gaps = 22/509 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF +I +P+  ++N +I G   A + ++ ++ L+ +M++LG + D FT   +  +C 
Sbjct: 93  ARQLFDEIPQPDTVSYNTLISGYADARETFA-AMVLFKRMRKLGFEVDGFTLSGLIAACC 151

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWN 189
           + + L     +H      G D    V+++ +T Y++ G L  A  VF  + E RD VSWN
Sbjct: 152 DRVDLIK--QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWN 209

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI  Y +     +A+ L+  M  + F  D  TL SVL +   L  L+ G+   G ++K 
Sbjct: 210 SMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA 269

Query: 250 KMDLNFYMGSALIDMYGKCGA---LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEA 305
               N ++GS LID Y KCG    +  + +VF  +++ D+V WN MI+ Y+ N  LS EA
Sbjct: 270 GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEA 329

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC------- 358
           +  F +M+  G  PD  + + V SAC+++ +    K +   A +  +  +          
Sbjct: 330 VKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALIS 389

Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G++ DA  VF+ MP  N VS+N MI   A +G   EALLL++RM   G A  PN 
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIA--PNK 447

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +TF+ VLSAC H G VDEG+  F+ M  +F + P++EHYSCM+DL  RAG L EA  F++
Sbjct: 448 ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP K   +   ALLGAC+K KN  +++R    L+ ++   +  YV+ + ++A+ + W++
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEE 567

Query: 534 SAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
            A +R  MR K + K PGCSWI +   K 
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIEVKKKKH 596



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 167/334 (50%), Gaps = 20/334 (5%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           ++  YA+  K+  AR++FDEI + D VS+N++ISGY+       A+ LF RMR+  F  D
Sbjct: 80  IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             TL  ++ +C D  DL+  K +  F V    D    + +A +  Y K G L  A  VF 
Sbjct: 140 GFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFY 197

Query: 280 AMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
            M   +D V+WN+MI AY Q+    +A+ L+  M + G   D  TL  VL+A  S+  L 
Sbjct: 198 GMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLI 257

Query: 339 LGKWVDKYASQRGLRH---------DIF--CGSID---DALKVFEDMPVTNEVSWNAMIS 384
            G+       + G            D +  CG  D   D+ KVF+++   + V WN MIS
Sbjct: 258 GGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMIS 317

Query: 385 ALAFNGR-AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
             + N   + EA+  F +M + G   RP+D +F+ V SAC +     + +++  L   S 
Sbjct: 318 GYSMNEELSEEAVKSFRQMQRIG--HRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSH 375

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
               +    + ++ LY ++G+L +A    +RMPE
Sbjct: 376 IPSNRISVNNALISLYYKSGNLQDARWVFDRMPE 409



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 119/277 (42%), Gaps = 44/277 (15%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV-----------P---------- 273
           DL  GK +    VK+ +  + Y+ +  +++Y KCG L            P          
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK 82

Query: 274 ----------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
                     AR++FD +   D V++N +I+ YA    +  A++LF RM+  G   D  T
Sbjct: 83  AYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFT 142

Query: 324 LIGVLSACA-------SIGALDLGKWVDKYASQRGLRHDIFC--GSIDDALKVFEDM-PV 373
           L G+++AC         +    +    D Y+S        +   G + +A+ VF  M  +
Sbjct: 143 LSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDEL 202

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            +EVSWN+MI A   +    +AL L++ M  +G   + +  T   VL+A      +  GR
Sbjct: 203 RDEVSWNSMIVAYGQHKEGAKALALYKEMIFKG--FKIDMFTLASVLNALTSLDHLIGGR 260

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           +    +  + G    S   S ++D Y++ G     +D
Sbjct: 261 QFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYD 296


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 166/486 (34%), Positives = 267/486 (54%), Gaps = 14/486 (2%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N +I G   + + +  +LK +  + + GL  D  T      +CA++     G  VH  
Sbjct: 350 SYNAIIVGYARSDRGF-QALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGL 408

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K     +  V+++++ MY +C  L  A  +FD +  RD VSWN++I+   + G  +E 
Sbjct: 409 AVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEET 468

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           +  F  M      PD+ T  SVL +C     L  G  +   ++K+ M  + ++G+AL+DM
Sbjct: 469 LAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDM 528

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y KCG +  A ++ D    K +V+WNA+I+ ++    S +A   F+RM   GVNPD  T 
Sbjct: 529 YCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTY 588

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
             VL  CA++  + LGK +     ++ L+ D++           CG++ D+  +FE  P 
Sbjct: 589 AAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPN 648

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + V+WNAM+   A +G   EAL LFE M       +PN  TF+ VL AC H GLVD+G 
Sbjct: 649 RDFVTWNAMLCGYAHHGLGEEALKLFESMQLVN--VKPNHATFVSVLRACAHMGLVDKGL 706

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
             FD+M S +GL P+SEHYSCMVD+  R+G + EA + V++MP + D ++   LL  C+ 
Sbjct: 707 HYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKI 766

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             N +V+++  + LL+++  +S   V+ S I+A+  MW + ++MR +MR   + K PGCS
Sbjct: 767 HGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCS 826

Query: 554 WIGIDD 559
           WI + D
Sbjct: 827 WIELKD 832



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 14/338 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS LF  + R +  ++N +I        +   +L  +  M    ++PD+FTY  V  +CA
Sbjct: 437 ASDLFDMMERRDAVSWNAIIAACEQNGNE-EETLAHFASMIHSRMEPDDFTYGSVLKACA 495

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
              ALN G+ +H+ + K G+  D  V  +L+ MY +CG ++ A K+ D   ++ +VSWN+
Sbjct: 496 GRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNA 555

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISG+S +  +++A + F RM E    PD  T  +VL +C +L  + LGK +   ++K +
Sbjct: 556 IISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQE 615

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + Y+ S L+DMY KCG +  ++ +F+   N+D VTWNAM+  YA +GL  EA+ LF 
Sbjct: 616 LQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFE 675

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGL----RH-----DIF--C 358
            M+   V P+  T + VL ACA +G +D G  + D   S+ GL     H     DI    
Sbjct: 676 SMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRS 735

Query: 359 GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEA 395
           G ID+AL + + MP   + V W  ++S    +G    A
Sbjct: 736 GRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVA 773



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 214/429 (49%), Gaps = 22/429 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++   N  +++ MI G      +    L+L+ +M+ +G+      Y  +F SCA L 
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQN-DRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALS 296

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           AL  G  +HS   K     D  V  + + MYA+CG++  A+KV   + +  L S+N++I 
Sbjct: 297 ALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIV 356

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++     +A++ F  + +     DEITL   L +C  +   + G+ V G  VK+    
Sbjct: 357 GYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMS 416

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + +A++DMYGKC AL  A  +FD M  +D V+WNA+I A  QNG   E +  F  M 
Sbjct: 417 NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI 476

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
           ++ + PD  T   VL ACA   AL+ G  +     + G+  D F           CG I+
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIE 536

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A K+ +       VSWNA+IS  +   ++ +A   F RM + G    P++ T+  VL  
Sbjct: 537 KADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMG--VNPDNFTYAAVLDT 594

Query: 423 CVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEKV 479
           C +   V  G+++   ++        +S+ Y C  +VD+Y++ G++ ++    E+ P + 
Sbjct: 595 CANLATVGLGKQIHAQIIKQEL----QSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNR- 649

Query: 480 DEIVLGALL 488
           D +   A+L
Sbjct: 650 DFVTWNAML 658



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 228/485 (47%), Gaps = 16/485 (3%)

Query: 6   KAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           +A++R + F      + +   L+ +  KC       ++  +M +  +   N ++      
Sbjct: 70  QAHAR-MIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASC 128

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
            + + A   F+++   +  ++N +I G     +    S+ ++ +M R G+  D  +   V
Sbjct: 129 GEMDIARKFFYEMPERDVVSWNSVISGFLQNGE-CRKSIDVFLEMGRCGVGFDRASLAVV 187

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C  L   + GV VH  V K G D D     +L+ MYA+C +LD +  VF E+ E++ 
Sbjct: 188 LKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNW 247

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW++MI+G  +     E +ELF  M+       +    S+  SC  L  L LGK +   
Sbjct: 248 VSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSH 307

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K+    +  +G+A +DMY KCG +  A++V  +M    + ++NA+I  YA++    +A
Sbjct: 308 ALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQA 367

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           +  F  +   G+  D+ITL G L+ACASI     G+ V   A +     +I         
Sbjct: 368 LKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDM 427

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              C ++ +A  +F+ M   + VSWNA+I+A   NG   E L  F  M        P+D 
Sbjct: 428 YGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHS--RMEPDDF 485

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T+  VL AC     ++ G  +   +  S G+   S   + +VD+Y + G + +A    +R
Sbjct: 486 TYGSVLKACAGRQALNTGMEIHTRIIKS-GMGFDSFVGAALVDMYCKCGMIEKADKIHDR 544

Query: 475 MPEKV 479
             +K 
Sbjct: 545 TEQKT 549



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 197/420 (46%), Gaps = 46/420 (10%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  ++  C+   +LN G   H+ +   G +    VS+ L+ MY +C  LD A KVFD++
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP---------------------- 218
             RD+VS+NS+ISGY+  G    A + F  M E + +                       
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 219 ---------DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
                    D  +L  VL +CG L +  +G  V G VVK   D +   GSAL+ MY KC 
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            L  +  VF  +  K+ V+W+AMI    QN  + E + LF  M+  GV   +     +  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFR 290

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           +CA++ AL LGK +  +A +     DI            CG + DA KV   MP  +  S
Sbjct: 291 SCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQS 350

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           +NA+I   A + R  +AL  F+ + K G     +++T  G L+AC       EGR++  L
Sbjct: 351 YNAIIVGYARSDRGFQALKSFQLLLKTGLGF--DEITLSGALNACASIRGDLEGRQVHGL 408

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
              S  +       + ++D+Y +   L+EA D  + M E+ D +   A++ AC++  N +
Sbjct: 409 AVKSISM-SNICVANAILDMYGKCKALAEASDLFDMM-ERRDAVSWNAIIAACEQNGNEE 466


>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
          Length = 464

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 168/443 (37%), Positives = 246/443 (55%), Gaps = 47/443 (10%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YA  +F  I  PN   +N M RG        S +LKLY  M  LGL P+++++PF+  SC
Sbjct: 25  YAISVFETIEEPNLLIWNTMFRGHALNSDSVS-ALKLYVCMISLGLLPNSYSFPFLLKSC 83

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD------------------ 171
           A   A   G  +H  V K+G D D +V  SLI+MYA+ G+L+                  
Sbjct: 84  AKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYT 143

Query: 172 -------------SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
                        SARK+FDEI  +D+VSWN+MISGY +    KEA+EL+  M +    P
Sbjct: 144 ALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKP 203

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           DE T+V+V+ +C    ++ LG+ V   +  +    N  + +AL+DMY KCG +  A R+F
Sbjct: 204 DESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLF 263

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             +VNKD ++WN +I  +    L  EA+ LF  M  +G +P+ +T++ VLSACA +GA+D
Sbjct: 264 QGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAID 323

Query: 339 LGKWVDKYASQR--------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           +G+W+  Y  +R         LR  +      CG I+ A +VF+ M   +  SWNAMI  
Sbjct: 324 IGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFG 383

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G+A+ A  LF +M K G    P+D+TF+G+LSAC H+G++D GR +F  M+  + +
Sbjct: 384 FAMHGKANAAFDLFSKMRKSG--IEPDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKI 441

Query: 446 IPKSEHYSCMVDLYARAGHLSEA 468
            PK EHY CM+DL  +     EA
Sbjct: 442 TPKLEHYGCMIDLLGQCALFKEA 464



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 166/349 (47%), Gaps = 45/349 (12%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  A  VF+ I E +L+ WN+M  G++    +  A++L+  M     LP+  +   +L S
Sbjct: 23  LPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKS 82

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG-------------------- 269
           C        G+ + G VVK   DL+ Y+ ++LI MY + G                    
Sbjct: 83  CAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 142

Query: 270 -ALVP----------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            AL+           AR++FD ++ KD+V+WNAMI+ Y +     EA+ L+  M    V 
Sbjct: 143 TALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVK 202

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKV 367
           PD+ T++ V+SACA    ++LG+ V       G   ++            CG ++ A ++
Sbjct: 203 PDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRL 262

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ +   + +SWN +I          EAL LF+ M + G +  PNDVT + VLSAC H G
Sbjct: 263 FQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGES--PNDVTMLSVLSACAHLG 320

Query: 428 LVDEGRRLFDLMSSSF-GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            +D GR +   +     G+   S   + ++D+YA+ G +  A    + M
Sbjct: 321 AIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSM 369


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 277/527 (52%), Gaps = 46/527 (8%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + RP     +  +  L+ A   +   L+ +  M R G    +   P VF SCA   
Sbjct: 26  LFDAVPRPAPALCSTFLSSLSRA-SSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTA 84

Query: 134 ALNHGVSVHSSVFKIGL------------------DEDDHVS-------------HSLIT 162
           +   G  VH      GL                  D +  VS             + LIT
Sbjct: 85  SSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLIT 144

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
            Y++ G +D AR++FD +  R   SWNSMI+ Y+  G  +EA+ LF RM  E   P+ IT
Sbjct: 145 GYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAIT 204

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           + SV   C   GDL  GK V   + ++ +  N  + +AL++MY KC A+  ARR FD M 
Sbjct: 205 ITSVFSICAKSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMS 263

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +DVV W+ MI  YAQNG   E++ LF RMK     P+++TL+GV+SACA +G+ +L + 
Sbjct: 264 QRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQ 323

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  YA  + L    +           CG +  A  VF  M     ++WN+MI  LA NG 
Sbjct: 324 IGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGF 383

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A +A+ L+E+M++ G   +PN++TF+ +L+AC HAGLVD+G   F+ M     + P+ EH
Sbjct: 384 AEDAISLYEKMAENG--VQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEH 441

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
            +C+VDL  ++G L EA+ F+  M  + + ++   LL +C+   + ++++   + LL +E
Sbjct: 442 CACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME 501

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             NS  YV+ S I+A+  +W D+ ++R LMR K V K    SWI +D
Sbjct: 502 PDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLD 548



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 206/400 (51%), Gaps = 20/400 (5%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+       D + A  LF  + R    ++N MI       + +  +L L+ +M   G 
Sbjct: 140 NCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGE-FREALALFDRMLSEGA 198

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +P+  T   VF  CA    L+ G  V   + +  L ++  V  +L+ MY +C  +D AR+
Sbjct: 199 RPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDL-QNVIVHTALMEMYVKCRAIDDARR 257

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
            FD + +RD+V+W++MI+GY++ G   E++ELF RM+  +  P+E+TLV V+ +C  LG 
Sbjct: 258 EFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGS 317

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
             L + +  +    ++ L  Y+GSALIDMY +CG +  AR VF  M  K V+TWN+MI  
Sbjct: 318 DELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRG 377

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG----------KWVDK 345
            A NG + +AI L+ +M   GV P++IT + +L+AC   G +D G            V  
Sbjct: 378 LAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSP 437

Query: 346 YASQRGLRHDIFC--GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
                    D+ C  G + +A K   DM V  N V W  ++S+     RAH  + L +  
Sbjct: 438 QVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSC----RAHADVELAKLA 493

Query: 403 SKEGGAARPNDVTFIGVLSAC-VHAGLVDEGRRLFDLMSS 441
           S++  A  P++ +   +LS     AGL  + R + DLM S
Sbjct: 494 SRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRS 533


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 286/514 (55%), Gaps = 17/514 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLG 114
           N L+       +   A +LF ++S  +  ++N MI G T     +S + L+ + QM  LG
Sbjct: 197 NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTM--NGFSRNGLEFFIQMLNLG 254

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           +  D+ T   V ++CAN+  L  G ++H+   K G       +++L+ MY++CG L+ A 
Sbjct: 255 VDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGAN 314

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           +VF ++ E  +VSW S+I+ + + G   EA+ LF  M+ +   PD   + SV+ +C    
Sbjct: 315 EVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSN 374

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L  G+ V   + KN M  N  + +AL++MY KCG++  A  +F  +  K++V+WN MI 
Sbjct: 375 SLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIG 434

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            Y+QN L NEA+ LF  M+   + PD +T+  VL ACA + AL+ G+ +  +  ++G   
Sbjct: 435 GYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFS 493

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D+            CG +  A ++F+ +P  + + W  MI+    +G   EA+  FE+M 
Sbjct: 494 DLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMR 553

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G    P + +F  +L AC H+GL+ EG +LFD M S   + PK EHY+CMVDL  R+G
Sbjct: 554 VAG--IEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSG 611

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
           +LS A+ F+E MP K D  + GALL  C+   + +++++V + + E+E  N+  YV+ + 
Sbjct: 612 NLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLAN 671

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++A  + W++  K++  + + G+    GCSWI +
Sbjct: 672 VYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEV 705



 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 212/393 (53%), Gaps = 21/393 (5%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y  S+ L+ +M+ LG++ D++T+  V    A    +     VH  V K+G    + V +S
Sbjct: 139 YRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS 198

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI  Y +CG+++SAR +FDE+ +RD+VSWNSMISG +  G+++  +E F +M       D
Sbjct: 199 LIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVD 258

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             TLV+VL +C ++G+L LG+ +  + VK          + L+DMY KCG L  A  VF 
Sbjct: 259 SATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFV 318

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M    +V+W ++I A+ + GL  EAI LF+ M+  G+ PD   +  V+ ACA   +LD 
Sbjct: 319 KMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDK 378

Query: 340 GKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G+ V  +  +  +  ++            CGS+++A  +F  +PV N VSWN MI   + 
Sbjct: 379 GREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQ 438

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD--LMSSSFGLI 446
           N   +EAL LF  M K+    +P+DVT   VL AC     +++GR +    L    F  +
Sbjct: 439 NSLPNEALQLFLDMQKQ---LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL 495

Query: 447 PKSEHYSC-MVDLYARAGHLSEAWDFVERMPEK 478
               H +C +VD+Y + G L  A    + +P+K
Sbjct: 496 ----HVACALVDMYVKCGLLVLAQQLFDMIPKK 524



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 202/390 (51%), Gaps = 20/390 (5%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           +++KL  + +R  L+ +  TY  V   CA L +L  G  VHS +   G+  D+ +   L+
Sbjct: 42  NAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLV 99

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MY  CG L   R++FD I    +  WN ++S Y+K+G  +E+V LF +M+E     D  
Sbjct: 100 FMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSY 159

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           T   VL        +   K V G+V+K        + ++LI  Y KCG +  AR +FD +
Sbjct: 160 TFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDEL 219

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
            ++DVV+WN+MI+    NG S   +  F +M   GV+ D  TL+ VL ACA++G L LG+
Sbjct: 220 SDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGR 279

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y  + G    +            CG+++ A +VF  M  T  VSW ++I+A    G
Sbjct: 280 ALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREG 339

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGL-IPK 448
             +EA+ LF+ M  +G   RP+      V+ AC  +  +D+GR + + +  ++ G  +P 
Sbjct: 340 LHYEAIGLFDEMQSKG--LRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPV 397

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           S   + ++++YA+ G + EA     ++P K
Sbjct: 398 S---NALMNMYAKCGSMEEANLIFSQLPVK 424



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 17/323 (5%)

Query: 167 CGKLDSARKVFDEIRERDL-VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           CG          E    ++ V  N+ I  + +MG  + A++L  R +  E   +  T  S
Sbjct: 5   CGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCS 62

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           VL  C +L  L  GK V   +  N M ++  +G+ L+ MY  CG LV  RR+FD ++N  
Sbjct: 63  VLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDK 122

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           +  WN +++ YA+ G   E++ LF +M+  G+  D  T   VL   A+   +   K V  
Sbjct: 123 IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHG 182

Query: 346 YASQRG-----------LRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
           Y  + G           +     CG ++ A  +F+++   + VSWN+MIS    NG +  
Sbjct: 183 YVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRN 242

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
            L  F +M   G     +  T + VL AC + G +  GR L      + G        + 
Sbjct: 243 GLEFFIQMLNLG--VDVDSATLVNVLVACANVGNLTLGRALHAYGVKA-GFSGGVMFNNT 299

Query: 455 MVDLYARAGHLSEAWDFVERMPE 477
           ++D+Y++ G+L+ A +   +M E
Sbjct: 300 LLDMYSKCGNLNGANEVFVKMGE 322


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/463 (38%), Positives = 263/463 (56%), Gaps = 24/463 (5%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R  + P   ++  +  SCA       G + H  + K+G + D  +   L+  YA+ G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  A++VF  +  RD+V+ N+MIS  SK GY +EA  LF  M E     +  +  S++  
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITC 116

Query: 230 CGDLGDLVLGKWV-EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN-KDVV 287
              LGD+   + + +   VK+ +  N     A+ID Y K   LV A+ +F  M + ++ V
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVSWN-----AIIDGYCKSKQLVAAQELFLLMGSARNSV 171

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           TWN MI+AY Q G    AI +F +M+   V P ++T++ +LSACA +GALD+G+W+  Y 
Sbjct: 172 TWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYI 231

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
             + L+ D+            CG+++ A+ VF  +   N   WN++I  L  NGR  EA+
Sbjct: 232 RTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAI 291

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
             F  M KEG   +P+ VTF+G+LS C H+GL+  G+R F  M   +GL P  EHY CMV
Sbjct: 292 AAFIVMEKEG--IKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMV 349

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL  RAG+L EA + +  MP K + +VLG+LL ACQ  K+T + ++V Q LLE++  + G
Sbjct: 350 DLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGG 409

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           NYV  S ++A+L  WDD    R LM ++GV KTPGCS I +++
Sbjct: 410 NYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNN 452



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 2/204 (0%)

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           S  N   +N MI       + +  ++ ++ QM+   +KP   T   +  +CA+L AL+ G
Sbjct: 166 SARNSVTWNTMISAYVQCGE-FGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG 224

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H  +    L  D  + ++LI MY +CG L++A  VF  +  +++  WNS+I G    
Sbjct: 225 EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMN 284

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYM 257
           G  +EA+  F  M +E   PD +T V +L  C   G L  G ++    +    ++     
Sbjct: 285 GRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEH 344

Query: 258 GSALIDMYGKCGALVPARRVFDAM 281
              ++D+ G+ G L  A  +  AM
Sbjct: 345 YGCMVDLLGRAGYLKEALELIRAM 368


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/499 (34%), Positives = 273/499 (54%), Gaps = 15/499 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +  ++N MI G +        ++ L+ +M+  GLKP  FT+  V  +  
Sbjct: 203 ACQLFKEMPEIDSVSYNAMITGYSKDGLD-EKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  +  G  +HS V K     +  VS++L+  Y++   +  ARK+FDE+ E+D VS+N 
Sbjct: 262 GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNV 321

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISGY+  G  K A +LF  ++   F   +    ++L    +  D  +G+ +    +   
Sbjct: 322 IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTT 381

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            D    +G++L+DMY KCG    A  +F  + ++  V W AMI+AY Q G   E + LFN
Sbjct: 382 ADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFN 441

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           +M+ A V  D+ T   +L A ASI +L LGK +  +  + G   ++F           CG
Sbjct: 442 KMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCG 501

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SI DA++ F++MP  N VSWNAMISA A NG A   L  F+ M   G   +P+ V+F+GV
Sbjct: 502 SIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSG--LQPDSVSFLGV 559

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H+GLV+EG   F+ M+  + L P+ EHY+ +VD+  R+G  +EA   +  MP   
Sbjct: 560 LSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDP 619

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIES-SNSGNYVISSKIFANLKMWDDSAKMR 538
           DEI+  ++L AC+  KN ++++R    L  +E   ++  YV  S I+A    W++ +K+ 
Sbjct: 620 DEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVH 679

Query: 539 ALMREKGVSKTPGCSWIGI 557
             MR++GV K P  SW+ I
Sbjct: 680 KAMRDRGVKKLPAYSWVEI 698



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 194/368 (52%), Gaps = 30/368 (8%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIID--LKDFNY-------ASLLFHQISRPNEYAFNVMIR 91
           QQIH+     F+ K NF+    +   L DF         A  LF ++   +  ++NV+I 
Sbjct: 270 QQIHS-----FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 324

Query: 92  GLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
           G   AW  K+ ++  L+ +++        F +  +    +N L    G  +H+       
Sbjct: 325 GY--AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 382

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
           D +  V +SL+ MYA+CGK + A  +F  +  R  V W +MIS Y + G+ +E ++LF +
Sbjct: 383 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNK 442

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           MR+   + D+ T  S+L +   +  L LGK +  F++K+    N + GSAL+D+Y KCG+
Sbjct: 443 MRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGS 502

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  A + F  M ++++V+WNAMI+AYAQNG +   +  F  M  +G+ PD ++ +GVLSA
Sbjct: 503 IKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSA 562

Query: 331 CASIGALDLGKW----------VDKYASQRGLRHDIFC--GSIDDALKVFEDMPV-TNEV 377
           C+  G ++ G W          +D          D+ C  G  ++A K+  +MP+  +E+
Sbjct: 563 CSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEI 622

Query: 378 SWNAMISA 385
            W+++++A
Sbjct: 623 MWSSVLNA 630



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 220/461 (47%), Gaps = 30/461 (6%)

Query: 30  LLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNV 88
           L +K P   TV    T M+I+ +++  N              A  LF  +       + +
Sbjct: 74  LFEKMPHKNTVS---TNMMISGYVKSGNL-----------GEARKLFDGMVERTAVTWTI 119

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           +I G +   Q +  + +L+ QM+R G +PD  T+  +   C      N    V + + K+
Sbjct: 120 LIGGYSQLNQ-FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKL 178

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G D    V ++L+  Y +  +LD A ++F E+ E D VS+N+MI+GYSK G  ++AV LF
Sbjct: 179 GYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLF 238

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             M+     P E T  +VL +   L D+VLG+ +  FV+K     N ++ +AL+D Y K 
Sbjct: 239 VEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKH 298

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
            +++ AR++FD M  +D V++N +I+ YA +G    A  LF  +++   +  +     +L
Sbjct: 299 DSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 358

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
           S  ++    ++G+ +           +I            CG  ++A  +F ++   + V
Sbjct: 359 SIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAV 418

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
            W AMISA    G   E L LF +M +    A  +  TF  +L A      +  G++L  
Sbjct: 419 PWTAMISAYVQKGFYEEGLQLFNKMRQASVIA--DQATFASLLRASASIASLSLGKQLHS 476

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +  S G +      S ++D+YA+ G + +A    + MP++
Sbjct: 477 FIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR 516



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 184/384 (47%), Gaps = 57/384 (14%)

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           L LN   ++ + + K G D D   S+  +  + + G+L  AR++F+++  ++ VS N MI
Sbjct: 31  LRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMI 90

Query: 193 SGYSKM--------------------------GYA-----KEAVELFGRMREEEFLPDEI 221
           SGY K                           GY+     KEA ELF +M+     PD +
Sbjct: 91  SGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYV 150

Query: 222 TLVSVLGSCG--DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           T V++L  C   ++G+ +    V+  ++K   D    +G+ L+D Y K   L  A ++F 
Sbjct: 151 TFVTLLSGCNGHEMGNQITQ--VQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFK 208

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD- 338
            M   D V++NAMIT Y+++GL  +A+ LF  M+ +G+ P + T   VL  CA+IG  D 
Sbjct: 209 EMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDI 266

Query: 339 -LGKWVDKYASQRGLRHDIFCG-----------SIDDALKVFEDMPVTNEVSWNAMISAL 386
            LG+ +  +  +     ++F             S+ DA K+F++MP  + VS+N +IS  
Sbjct: 267 VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY 326

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A++G+   A  LF  +  +  A       F  +LS   +    + GR++    + +    
Sbjct: 327 AWDGKHKYAFDLFREL--QFTAFDRKQFPFATMLSIASNTLDWEMGRQIH---AQTIVTT 381

Query: 447 PKSEHY--SCMVDLYARAGHLSEA 468
             SE    + +VD+YA+ G   EA
Sbjct: 382 ADSEILVGNSLVDMYAKCGKFEEA 405



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 40/207 (19%)

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE---------GGAA 409
           G +  A ++FE MP  N VS N MIS    +G   EA  LF+ M +          GG +
Sbjct: 66  GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 125

Query: 410 R--------------------PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           +                    P+ VTF+ +LS C    +   G ++  + +    L   S
Sbjct: 126 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEM---GNQITQVQTQIIKLGYDS 182

Query: 450 EHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
                + +VD Y ++  L  A    + MPE +D +   A++    K     + ++ + L 
Sbjct: 183 RLIVGNTLVDSYCKSNRLDLACQLFKEMPE-IDSVSYNAMITGYSKD---GLDEKAVNLF 238

Query: 508 LEIESS--NSGNYVISSKIFANLKMWD 532
           +E+++S      +  ++ + AN+ + D
Sbjct: 239 VEMQNSGLKPTEFTFAAVLCANIGLDD 265


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 274/508 (53%), Gaps = 18/508 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D ++A  +F  +   +  ++N MI GL    + +  ++K Y  M++ GL P NF      
Sbjct: 153 DIDHARSVFGLMVDKDSVSWNSMITGLDQN-KCFEDAVKSYNSMRKTGLMPSNFALISAL 211

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SCA+L  +  G   H    K+GLD D  VS++L+ +YA   +L   +KVF  + ERD V
Sbjct: 212 SSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQV 271

Query: 187 SWNSMISGYSKMGYA-KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           SWN++I   +  G +  EA+E+F  M    + P+ +T +++L +   L    L   +   
Sbjct: 272 SWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHAL 331

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNE 304
           ++K  +  +  + +AL+  YGK G +     +F  M  + D V+WN+MI+ Y  N L  +
Sbjct: 332 ILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCK 391

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ L   M   G   D  T   VLSACA++  L+ G  V   A +  L  D+        
Sbjct: 392 AMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVD 451

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG ID A + F  MPV N  SWN+MIS  A +G    AL LF RM   G    P+ 
Sbjct: 452 MYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSG--QLPDH 509

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +TF+GVLSAC H GLVDEG   F  M+  +GL+P+ EHYSCMVDL  RAG L +  +F+ 
Sbjct: 510 ITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFIN 569

Query: 474 RMPEKVDEIVLGALLGACQK--QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +MP K + ++   +LGAC +   + T++ +R  ++L  ++  N+ NYV+ S ++A+   W
Sbjct: 570 KMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKW 629

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +D A+ R  MRE  V K  GCSW+ + D
Sbjct: 630 EDMARTRRAMREAAVKKEAGCSWVTMKD 657



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 189/361 (52%), Gaps = 17/361 (4%)

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H +V K G D D  + ++LI +Y R G   SARK+FDE+ +R+ V+W  +ISGY++ G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGD-LGDLVLGKWVEGFVVKNKM-DLNFYMGS 259
           ++A  +   M  E FLP+     S + +C + +     G+ V G+ ++  + D    +G+
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LI+MY KCG +  AR VF  MV+KD V+WN+MIT   QN    +A+  +N M+  G+ P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDAL-----------KVF 368
               LI  LS+CAS+G + LG+       + GL  D+   +   AL           KVF
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVF 262

Query: 369 EDMPVTNEVSWNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
             M   ++VSWN +I ALA +G +  EA+ +F  M + G +  PN VTFI +L+      
Sbjct: 263 SWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWS--PNRVTFINLLATVSSLS 320

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
                 ++  L+   + +   +   + ++  Y ++G +    +   RM E+ DE+   ++
Sbjct: 321 TSKLSHQIHALI-LKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSM 379

Query: 488 L 488
           +
Sbjct: 380 I 380



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 141/484 (29%), Positives = 223/484 (46%), Gaps = 51/484 (10%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+   + + D   A  LF ++   N   +  +I G T        +  +  +M   G 
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP-EDACGVLKEMIFEGF 97

Query: 116 KPDNFTYPFVFISCA-NLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSA 173
            P+ F +     +C  ++L    G  VH    + GL D    V + LI MYA+CG +D A
Sbjct: 98  LPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHA 157

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R VF  + ++D VSWNSMI+G  +    ++AV+ +  MR+   +P    L+S L SC  L
Sbjct: 158 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASL 217

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           G ++LG+   G  +K  +D++  + + L+ +Y +   L   ++VF  M+ +D V+WN +I
Sbjct: 218 GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVI 277

Query: 294 TAYAQNGLS-NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
            A A +G S +EAI +F  M  AG +P+++T I +L+  +S+    L   +     +  +
Sbjct: 278 GALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNV 337

Query: 353 RHD-------IFC----GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFE 400
           + D       + C    G +++  ++F  M    +EVSWN+MIS    N    +A+ L  
Sbjct: 338 KDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVW 397

Query: 401 RMSKEGGAARPNDVTFIGVLSAC-----------VHAGLVDE--------GRRLFDLMSS 441
            M + G   R +  TF  VLSAC           VHA  +          G  L D+ S 
Sbjct: 398 LMMQRG--QRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSK 455

Query: 442 S---------FGLIPKSEHYS--CMVDLYARAGHLSEAWDFVERMP---EKVDEIVLGAL 487
                     F L+P    YS   M+  YAR GH   A     RM    +  D I    +
Sbjct: 456 CGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGV 515

Query: 488 LGAC 491
           L AC
Sbjct: 516 LSAC 519



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 169/322 (52%), Gaps = 8/322 (2%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQM----LINFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           L+S L  C S   +   QQ H +     L   +   N LL    +         +F  + 
Sbjct: 207 LISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWML 266

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             ++ ++N +I  L  +    S +++++ +M R G  P+  T+  +  + ++L       
Sbjct: 267 ERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSH 326

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSKM 198
            +H+ + K  + +D+ + ++L+  Y + G++++  ++F  + ER D VSWNSMISGY   
Sbjct: 327 QIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHN 386

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               +A++L   M +     D  T  +VL +C  +  L  G  V    ++  ++ +  +G
Sbjct: 387 ELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIG 446

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           SAL+DMY KCG +  A R F+ M  +++ +WN+MI+ YA++G  + A+ LF RMK +G  
Sbjct: 447 SALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQL 506

Query: 319 PDKITLIGVLSACASIGALDLG 340
           PD IT +GVLSAC+ IG +D G
Sbjct: 507 PDHITFVGVLSACSHIGLVDEG 528


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 193/592 (32%), Positives = 299/592 (50%), Gaps = 61/592 (10%)

Query: 22  LLREKLLSLLKKCPSTKTV---QQIHTQML-INFIQKPNFLLIRIIDLKDFNY---ASLL 74
           L+   + SLL  C   K++   +Q+H  ++ + F Q P  +   +     FN    A ++
Sbjct: 98  LIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVI 157

Query: 75  FHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
               +  + + +N++I         QK   +L  Y QM + G++PDNFTYP V  +C   
Sbjct: 158 TENSNILHPFPWNLLISSYVRNGFCQK---ALSAYKQMVKKGIRPDNFTYPSVLKACGEE 214

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           L L  G  VH S+    +     V ++LI+MY +CGK+  AR +FD+I ERD VSWNSMI
Sbjct: 215 LDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMI 274

Query: 193 SGYSKMGYAKEAVELFGRMREE--------------------------EFLP-------- 218
           S Y+ MG   EA ELFG M  E                          E L         
Sbjct: 275 SVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSH 334

Query: 219 -DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            D + L+  LG+C  +GD  LGK +  F +++       + +ALI MY +C  L  A  +
Sbjct: 335 LDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLL 394

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F  M  K ++TWN++I+       S EA  L   M   G+ P+ +T+  VL  CA +  L
Sbjct: 395 FQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANL 454

Query: 338 DLGKWVDKYASQRGLRHDIF------------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
             GK    Y ++R    D               G + +A +VF+ +   +++++ +MI+ 
Sbjct: 455 QHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAG 514

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
               G    AL LFE M+      +P+ +T I VLSAC H+GLV +G+ LF+ M S +GL
Sbjct: 515 YGMQGEGQAALKLFEEMNN--FQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGL 572

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EH++CM DL+ RAG L++A + +  MP K    +   L+GAC+  +NT++ +   +
Sbjct: 573 TPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAE 632

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            LLE++  N G YV+ + ++A    W+  AK+R  MR+ GV K PGC+W+ +
Sbjct: 633 KLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 684


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/462 (37%), Positives = 259/462 (56%), Gaps = 14/462 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+  G  P+ FT+  +  + A  + + HG  +HS + K G D +  V  +L+ MYA+C  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR-MREEEFLPDEITLVSVLG 228
           + SA +VFD++ ER+LVSWNSMI G+        AV +F   +RE+  +P+E+++ SVL 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           +C ++G L  G+ V G VVK  +    Y+ ++L+DMY KC       ++F  + ++DVVT
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN ++  + QN    EA   F  M+  G+ PD+ +   VL + AS+ AL  G  +     
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + G   ++            CGS+ DA +VFE +   N +SW AMISA   +G A++ + 
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LFE M  EG    P+ VTF+ VLSAC H G V+EG   F+ M     + P  EHY+CMVD
Sbjct: 301 LFEHMLSEG--IEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVD 358

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  RAG L EA  F+E MP K    V GALLGAC+K  N  + +   + L E+E  N GN
Sbjct: 359 LLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGN 418

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           YV+ + +       +++ ++R LM   GV K PGCSWI + +
Sbjct: 419 YVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKN 460



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 45/447 (10%)

Query: 36  STKTVQQIHTQMLINFIQKPNF-----LLIRIIDL----KDFNYASLLFHQISRPNEYAF 86
           S  T+  +H Q L + I K  F     +   ++D+     D + A  +F Q+   N  ++
Sbjct: 20  SAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSW 79

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQ-MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           N MI G       Y  ++ ++   ++   + P+  +   V  +CAN+  LN G  VH  V
Sbjct: 80  NSMIVGFFHN-NLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVV 138

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
            K GL    +V +SL+ MY +C   D   K+F  + +RD+V+WN ++ G+ +    +EA 
Sbjct: 139 VKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEAC 198

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
             F  MR E  LPDE +  +VL S   L  L  G  +   ++K     N  +  +LI MY
Sbjct: 199 NYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMY 258

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG+LV A +VF+ + + +V++W AMI+AY  +G +N+ I LF  M   G+ P  +T +
Sbjct: 259 AKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFV 318

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISA 385
            VLSAC+  G +           + GL H        +++K   DM    E  +  M+  
Sbjct: 319 CVLSACSHTGRV-----------EEGLAH-------FNSMKKIHDMNPGPE-HYACMVDL 359

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR----RLFDLMSS 441
           L   G   EA    E M       +P    +  +L AC   G +  GR    RLF++   
Sbjct: 360 LGRAGWLDEAKRFIESM-----PMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPY 414

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEA 468
           + G      +Y  + ++  R+G L EA
Sbjct: 415 NPG------NYVLLANMCTRSGRLEEA 435


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 274/478 (57%), Gaps = 27/478 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLI 161
           +L+   +M   G++PD FT   V  +C++L  L  G  +H+   K G LDE+  V  +L+
Sbjct: 286 ALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 345

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDE 220
            MY  C ++ S R+VFD + +R +  WN+MI+GYS+  + KEA+ LF  M E    L + 
Sbjct: 346 DMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T+  V+ +C   G     + + GFVVK  +D + ++ + L+DMY + G +  A R+F  
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-----------YAGVNPDKITLIGVLS 329
           M ++D+VTWN MIT Y  +    +A++L ++M+              + P+ ITL+ +L 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           +CA++ AL  GK +  YA +  L  D+            CG +  + KVF+ +P  N ++
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WN +I A   +G   EA+ L   M  +G   +PN+VTFI V +AC H+G+VDEG R+F +
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQG--VKPNEVTFISVFAACSHSGMVDEGLRIFYV 643

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNT 497
           M   +G+ P S+HY+C+VDL  RAG + EA+  +  MP   ++     +LLGA +   N 
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNL 703

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++ +   Q L+++E + + +YV+ + I+++  +WD + ++R  M+E+GV K PGCSWI
Sbjct: 704 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 236/468 (50%), Gaps = 33/468 (7%)

Query: 41  QQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           +QIH  +      ++ +   N L+       DF     +F +IS  N+ ++N +I  L +
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 176

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL---ALNHGVSVHSSVFKIGLDE 152
            ++K+  +L+ +  M    ++P +FT   V  +C+NL     L  G  VH+   + G + 
Sbjct: 177 -FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 234

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           +  + ++L+ MY + GKL S++ +      RDLV+WN+++S   +     EA+E    M 
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGAL 271
            E   PDE T+ SVL +C  L  L  GK +  + +KN  +D N ++GSAL+DMY  C  +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSA 330
           +  RRVFD M ++ +  WNAMI  Y+QN    EA++LF  M + AG+  +  T+ GV+ A
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSW 379
           C   GA    + +  +  +RGL  D F            G ID A+++F  M   + V+W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 380 NAMISALAFNGRAHEALLLFERMSK-----EGGAAR----PNDVTFIGVLSACVHAGLVD 430
           N MI+   F+    +ALLL  +M         GA+R    PN +T + +L +C     + 
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +G+ +      +  L       S +VD+YA+ G L  +    +++P+K
Sbjct: 535 KGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 197/388 (50%), Gaps = 19/388 (4%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYA 165
           Y  M  LG+KPDN+ +P +  + A+L  +  G  +H+ V+K G   D   V+++L+ +Y 
Sbjct: 85  YVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYR 144

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           +CG   +  KVFD I ER+ VSWNS+IS        + A+E F  M +E   P   TLVS
Sbjct: 145 KCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVS 204

Query: 226 VLGSCGDLG---DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           V+ +C +L     L++GK V  + ++ K +LN ++ + L+ MYGK G L  ++ +  +  
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +D+VTWN ++++  QN    EA+     M   GV PD+ T+  VL AC+ +  L  GK 
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323

Query: 343 VDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           +  YA + G L  + F GS           +    +VF+ M       WNAMI+  + N 
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              EALLLF  M +  G    N  T  GV+ ACV +G       +   +    GL     
Sbjct: 384 HDKEALLLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRF 441

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + ++D+Y+R G +  A     +M ++
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGKMEDR 469



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 199/412 (48%), Gaps = 52/412 (12%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           +N MI G +   +    +L L+  M+   GL  ++ T   V  +C    A +   ++H  
Sbjct: 372 WNAMIAGYSQN-EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V K GLD D  V ++L+ MY+R GK+D A ++F ++ +RDLV+WN+MI+GY    + ++A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 205 VELFGRMREEE-----------FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           + L  +M+  E             P+ ITL+++L SC  L  L  GK +  + +KN +  
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  +GSAL+DMY KCG L  +R+VFD +  K+V+TWN +I AY  +G   EAI L   M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
             GV P+++T I V +AC+                          G +D+ L++F  M  
Sbjct: 611 VQGVKPNEVTFISVFAACS------------------------HSGMVDEGLRIFYVMKP 646

Query: 374 TNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
              V      +  ++  L   GR  EA  L   M        P D    G  S+ + A  
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM--------PRDFNKAGAWSSLLGASR 698

Query: 429 VDEGRRLFDLMSSSF-GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +     + ++ + +   L P  + HY  + ++Y+ AG   +A +    M E+
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 750



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  ++    +    +EAV  +  M      PD     ++L +  DL D+ LGK +   V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 248 KNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           K    ++   + + L+++Y KCG      +VFD +  ++ V+WN++I++         A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYASQRGLRHDIFC----- 358
             F  M    V P   TL+ V++AC+++     L +GK V  Y  ++G  +         
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G +  +  +       + V+WN ++S+L  N +  EAL     M  EG    P++
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG--VEPDE 302

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            T   VL AC H  ++  G+ L      +  L   S   S +VD+Y
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 185/496 (37%), Positives = 281/496 (56%), Gaps = 17/496 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANL 132
           LF +I   + +++  +I GL    ++   +L ++ +M   G+  P+ F +  VF +C+ +
Sbjct: 203 LFERIRDKDLFSWGSIIAGLAQQGREMD-ALHIFREMIAEGMHHPNEFHFGSVFRACSVV 261

Query: 133 L-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           + +L +G  +H    K  LD + +   SL  MYARC KLDSA KVF  I   DLVSWNS+
Sbjct: 262 INSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSL 321

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+ +S  G   EA+ LF  MR     PD IT++++L +C     L  G+ +  ++VK  +
Sbjct: 322 INAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGL 381

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             +  + ++LI MY +C     A  VF    ++DVVTWN+++TA  Q+    +   LF  
Sbjct: 382 GGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRL 441

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           +  +  + D+I+L  VLSA A +G  ++ K V  YA + GL  D             CGS
Sbjct: 442 LHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGS 501

Query: 361 IDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +DDA K+FE M    +V SW+++I   A  G A EAL LF RM   G   +PN VTF+GV
Sbjct: 502 LDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLG--VKPNHVTFVGV 559

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC   GLVDEG   + +M   +G++P  EH SC++DL ARAG LSEA  FV++MP + 
Sbjct: 560 LIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEP 619

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+   LL A +   + ++ +R  + +L I+ S+S  YV+   I+A+   W++ A+++ 
Sbjct: 620 DIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKK 679

Query: 540 LMREKGVSKTPGCSWI 555
            MR  GV K+PG SWI
Sbjct: 680 DMRSSGVQKSPGKSWI 695



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 196/388 (50%), Gaps = 20/388 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH--VSHSL 160
           ++ L+  M RLG  PD F       +CA L  L  G  VH+   K   D   H  V ++L
Sbjct: 130 AMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKS--DNGGHLIVQNAL 187

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPD 219
           +TMY++ G +     +F+ IR++DL SW S+I+G ++ G   +A+ +F  M  E    P+
Sbjct: 188 VTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPN 247

Query: 220 EITLVSVLGSCG-DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           E    SV  +C   +  L  G+ + G  VK K+D N Y G +L DMY +C  L  A +VF
Sbjct: 248 EFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVF 307

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
             + + D+V+WN++I A++ +GL +EA++LF+ M+Y+ + PD IT++ +L AC    AL 
Sbjct: 308 YRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALR 367

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +  Y  + GL  D+            C     A+ VF +    + V+WN++++A  
Sbjct: 368 QGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACV 427

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +    +   LF  +         + ++   VLSA    G  +  +++    +   GL+ 
Sbjct: 428 QHRHMEDVFKLFRLL--HSSMPSLDRISLNNVLSASAELGYFEMAKQV-HAYAFKVGLVS 484

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERM 475
            +   + ++D YA+ G L +A    E M
Sbjct: 485 DAILSNALIDTYAKCGSLDDANKLFEIM 512



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 198/397 (49%), Gaps = 22/397 (5%)

Query: 129 CANLLALNHGVSVH-----SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           C+ L +   G  VH     SS     L  +  +S+ LITMY RC   DSAR VFD + +R
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDR 109

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           + VSW ++I+ +++     +A+ LF  M      PDE  L S + +C +LGDL LG+ V 
Sbjct: 110 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVH 169

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +K+    +  + +AL+ MY K G++     +F+ + +KD+ +W ++I   AQ G   
Sbjct: 170 AQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREM 229

Query: 304 EAIMLFNRMKYAGV-NPDKITLIGVLSACA-SIGALDLGKWVDKYASQRGLRHDIF---- 357
           +A+ +F  M   G+ +P++     V  AC+  I +L+ G+ +     +  L  + +    
Sbjct: 230 DALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCS 289

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  C  +D A+KVF  +   + VSWN++I+A + +G   EA++LF  M     + +
Sbjct: 290 LGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYS--SLK 347

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ +T + +L ACV    + +GR +   +    GL       + ++ +Y R      A D
Sbjct: 348 PDGITVMALLCACVGCDALRQGRSIHSYL-VKLGLGGDVMVCNSLISMYTRCLDFPSAMD 406

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
                 ++ D +   ++L AC + ++ +   ++ +LL
Sbjct: 407 VFHETNDR-DVVTWNSILTACVQHRHMEDVFKLFRLL 442


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 274/478 (57%), Gaps = 27/478 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLI 161
           +L+   +M   G++PD FT   V  +C++L  L  G  +H+   K G LDE+  V  +L+
Sbjct: 286 ALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 345

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDE 220
            MY  C ++ S R+VFD + +R +  WN+MI+GYS+  + KEA+ LF  M E    L + 
Sbjct: 346 DMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T+  V+ +C   G     + + GFVVK  +D + ++ + L+DMY + G +  A R+F  
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-----------YAGVNPDKITLIGVLS 329
           M ++D+VTWN MIT Y  +    +A++L ++M+              + P+ ITL+ +L 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           +CA++ AL  GK +  YA +  L  D+            CG +  + KVF+ +P  N ++
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WN +I A   +G   EA+ L   M  +G   +PN+VTFI V +AC H+G+VDEG R+F +
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQG--VKPNEVTFISVFAACSHSGMVDEGLRIFYV 643

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNT 497
           M   +G+ P S+HY+C+VDL  RAG + EA+  +  MP   ++     +LLGA +   N 
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNL 703

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++ +   Q L+++E + + +YV+ + I+++  +WD + ++R  M+E+GV K PGCSWI
Sbjct: 704 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 236/468 (50%), Gaps = 33/468 (7%)

Query: 41  QQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           +QIH  +      ++ +   N L+       DF     +F +IS  N+ ++N +I  L +
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 176

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL---ALNHGVSVHSSVFKIGLDE 152
            ++K+  +L+ +  M    ++P +FT   V  +C+NL     L  G  VH+   + G + 
Sbjct: 177 -FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 234

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           +  + ++L+ MY + GKL S++ +      RDLV+WN+++S   +     EA+E    M 
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGAL 271
            E   PDE T+ SVL +C  L  L  GK +  + +KN  +D N ++GSAL+DMY  C  +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSA 330
           +  RRVFD M ++ +  WNAMI  Y+QN    EA++LF  M + AG+  +  T+ GV+ A
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSW 379
           C   GA    + +  +  +RGL  D F            G ID A+++F  M   + V+W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 380 NAMISALAFNGRAHEALLLFERMSK-----EGGAAR----PNDVTFIGVLSACVHAGLVD 430
           N MI+   F+    +ALLL  +M         GA+R    PN +T + +L +C     + 
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +G+ +      +  L       S +VD+YA+ G L  +    +++P+K
Sbjct: 535 KGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 197/388 (50%), Gaps = 19/388 (4%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYA 165
           Y  M  LG+KPDN+ +P +  + A+L  +  G  +H+ V+K G   D   V+++L+ +Y 
Sbjct: 85  YVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYR 144

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           +CG   +  KVFD I ER+ VSWNS+IS        + A+E F  M +E   P   TLVS
Sbjct: 145 KCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVS 204

Query: 226 VLGSCGDLG---DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           V+ +C +L     L++GK V  + ++ K +LN ++ + L+ MYGK G L  ++ +  +  
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +D+VTWN ++++  QN    EA+     M   GV PD+ T+  VL AC+ +  L  GK 
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323

Query: 343 VDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           +  YA + G L  + F GS           +    +VF+ M       WNAMI+  + N 
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              EALLLF  M +  G    N  T  GV+ ACV +G       +   +    GL     
Sbjct: 384 HDKEALLLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRF 441

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + ++D+Y+R G +  A     +M ++
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGKMEDR 469



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 199/412 (48%), Gaps = 52/412 (12%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           +N MI G +   +    +L L+  M+   GL  ++ T   V  +C    A +   ++H  
Sbjct: 372 WNAMIAGYSQN-EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V K GLD D  V ++L+ MY+R GK+D A ++F ++ +RDLV+WN+MI+GY    + ++A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 205 VELFGRMREEE-----------FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           + L  +M+  E             P+ ITL+++L SC  L  L  GK +  + +KN +  
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  +GSAL+DMY KCG L  +R+VFD +  K+V+TWN +I AY  +G   EAI L   M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
             GV P+++T I V +AC+                          G +D+ L++F  M  
Sbjct: 611 VQGVKPNEVTFISVFAACS------------------------HSGMVDEGLRIFYVMKP 646

Query: 374 TNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
              V      +  ++  L   GR  EA  L   M        P D    G  S+ + A  
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM--------PRDFNKAGAWSSLLGASR 698

Query: 429 VDEGRRLFDLMSSSF-GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +     + ++ + +   L P  + HY  + ++Y+ AG   +A +    M E+
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 750



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 16/286 (5%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  ++    +    +EAV  +  M      PD     ++L +  DL D+ LGK +   V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 248 KNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           K    ++   + + L+++Y KCG      +VFD +  ++ V+WN++I++         A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYASQRGLRHDIFC----- 358
             F  M    V P   TL+ V++AC+++     L +GK V  Y  ++G  +         
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G +  +  +       + V+WN ++S+L  N +  EAL     M  EG    P++
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG--VEPDE 302

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            T   VL AC H  ++  G+ L      +  L   S   S +VD+Y
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 291/534 (54%), Gaps = 18/534 (3%)

Query: 41   QQIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
            +Q+H  ++ +NF   P     LL           A  +F Q+        N MI      
Sbjct: 669  RQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGN 728

Query: 97   WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
             + Y  +L LY +MK      D+FT   +   C+ + + + G +VH+ V K  +  +  +
Sbjct: 729  GRAYD-ALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAI 787

Query: 157  SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
              +L+TMY +CG  + A  VF  ++ERD+V+W SMI+G+ +    K+A++LF  M +E  
Sbjct: 788  QSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGV 847

Query: 217  LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
              D   + SV+ +   L ++ LG  + GF +K  ++ + ++  +L+DMY K G    A  
Sbjct: 848  KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 907

Query: 277  VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
            VF +M NK++V WN+MI+ Y+ NGL   +I L  ++   G   D +++  VL A +S+ A
Sbjct: 908  VFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAA 967

Query: 337  LDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISA 385
            L  GK +  Y  +  +  D           + CG +  A  +FE+MP  N V+WN+MI+ 
Sbjct: 968  LLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAG 1027

Query: 386  LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
               +G   EA+ LF+ M +   A  P++VTF+ ++++C H+G+V+EG  LF LM   +G+
Sbjct: 1028 YGSHGNCEEAVRLFKEMKRSETA--PDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGV 1085

Query: 446  IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
             P+ EHY+ +VDL  RAG L +A+ F+  MP   D  V   LL AC+  +N ++ + V  
Sbjct: 1086 EPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVAD 1145

Query: 506  LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             LL++E +   NYV    ++  ++MWD +A +RA M+ +G+ K+PGCSWI + +
Sbjct: 1146 NLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKN 1199



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 215/424 (50%), Gaps = 34/424 (8%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           KYS +L+L+ +     L    FT+P +  +CA+L  L HG ++H+S+  +GL  D +++ 
Sbjct: 421 KYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIAT 480

Query: 159 SLITMYARCGKLDSARKVFDEIRER-----DLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
           SLI MY +CG L SA +VFD++ E      D+  WN +I GY K G+ +E +  F RM+E
Sbjct: 481 SLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE 540

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD  +L  VLG C  L   + G+ + G++++N  + + Y+ +ALI MY  C   + 
Sbjct: 541 LGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPME 600

Query: 274 ARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
           A  +F  + N+ ++V WN MI  + +NG+  +++ L++  K         +  G  +AC+
Sbjct: 601 AWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 660

Query: 333 SIGALDLGKWV-----------DKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW-N 380
               LD G+ V           D Y     L      GS++DA KVF D  +  EV   N
Sbjct: 661 HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVF-DQVLDKEVELRN 719

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF---- 436
           AMISA   NGRA++AL L+ +M  + G    +  T   +LS C   G  D GR +     
Sbjct: 720 AMISAFIGNGRAYDALGLYNKM--KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVI 777

Query: 437 -DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQ 494
              M S+  +       S ++ +Y + G   +A      M E+ D +  G+++ G CQ +
Sbjct: 778 KRSMQSNVAI------QSALLTMYYKCGSTEDADSVFYTMKER-DVVAWGSMIAGFCQNR 830

Query: 495 KNTD 498
           +  D
Sbjct: 831 RFKD 834



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 225/457 (49%), Gaps = 26/457 (5%)

Query: 41   QQIHTQMLINFIQKPNFLLIRIIDL-----KDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
            +QIH  ++ N  +   +L   +I +     +     SL     +R N  A+NVMI G   
Sbjct: 567  RQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVE 626

Query: 96   --AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
               W+K   SL+LY   K    K  + ++   F +C++   L+ G  VH  V K+   +D
Sbjct: 627  NGMWEK---SLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDD 683

Query: 154  DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             +V  SL+TMYA+ G ++ A+KVFD++ ++++   N+MIS +   G A +A+ L+ +M+ 
Sbjct: 684  PYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKA 743

Query: 214  EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
             E   D  T+ S+L  C  +G    G+ V   V+K  M  N  + SAL+ MY KCG+   
Sbjct: 744  GETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTED 803

Query: 274  ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
            A  VF  M  +DVV W +MI  + QN    +A+ LF  M+  GV  D   +  V+SA   
Sbjct: 804  ADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLG 863

Query: 334  IGALDLGKWVDKYASQRGLRHDIF--CGSID---------DALKVFEDMPVTNEVSWNAM 382
            +  ++LG  +  +A +RGL  D+F  C  +D          A  VF  MP  N V+WN+M
Sbjct: 864  LENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSM 923

Query: 383  ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
            IS  ++NG    ++ L  ++ + G       +T + V  + V A L  +    + +    
Sbjct: 924  ISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ- 982

Query: 443  FGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMPEK 478
               IP   +  + ++D+Y + G L  A    E MP +
Sbjct: 983  ---IPSDLQVENALIDMYVKCGCLKYAQLIFENMPRR 1016



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 165/368 (44%), Gaps = 34/368 (9%)

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARC--GKLDSARKVFDEIRERDLVSWNSMISG 194
            GVS   +V  I L +  +V   ++T  AR    +L   + V + +    +    +++  
Sbjct: 362 EGVSTAGAV--IALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMNLPQVEEIKALV-- 417

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
             + G   +A+EL  +         + T  S+L +C  L +L  G+ +   +V   +  +
Sbjct: 418 --QQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSD 475

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNK-----DVVTWNAMITAYAQNGLSNEAIMLF 309
            Y+ ++LI+MY KCG L  A +VFD M        D+  WN +I  Y + G   E +  F
Sbjct: 476 PYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQF 535

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
            RM+  G+ PD  +L  VL  C  +     G+ +  Y  +     D +           C
Sbjct: 536 CRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSC 595

Query: 359 GSIDDALKVFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
               +A  +F  +   +N V+WN MI     NG   ++L L+     E    +    +F 
Sbjct: 596 SRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNEN--CKLVSASFT 653

Query: 418 GVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVER 474
           G  +AC H  ++D GR++  D++  +F    + + Y C  ++ +YA++G + +A    ++
Sbjct: 654 GAFTACSHGEVLDFGRQVHCDVIKMNF----QDDPYVCTSLLTMYAKSGSVEDAKKVFDQ 709

Query: 475 MPEKVDEI 482
           + +K  E+
Sbjct: 710 VLDKEVEL 717


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 182/562 (32%), Positives = 289/562 (51%), Gaps = 51/562 (9%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKD 67
           L   + N P      L  +L   P  KT++ +H++++   ++  + L ++++     LKD
Sbjct: 31  LELDQKNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKD 90

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
              A  +F +I   N    NVMIR        Y   ++++  M    +KPD++T+P V  
Sbjct: 91  VATARKVFDEIPERNVIIINVMIRSYVNNG-FYREGIQVFGTMCSCHVKPDHYTFPCVLK 149

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +C+    +  G  +H S  K+GL     V + L++MY +CG L  AR V DE+  RD+VS
Sbjct: 150 ACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS 209

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNS+++GY++     +A+E+   M   +   D  T+ S+L +            V     
Sbjct: 210 WNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA------------VSNTTT 257

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +N M +         DM+ K G              K +V+WN MI  Y +N +  EA+ 
Sbjct: 258 ENVMYVK--------DMFFKMG-------------KKSLVSWNVMIGVYMKNAMPVEAVE 296

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           L++ M+  G  PD +++  VL AC    AL LGK +  Y  ++ L  ++           
Sbjct: 297 LYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 356

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +D A  VFE+M   + VSW AMISA  F+GR  +A+ LF +M   G    P+ + F
Sbjct: 357 KCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLV--PDSIAF 414

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +  L+AC HAGL++EGR  F LM+  + + P+ EH +CMVDL  RAG + EA+ F++ MP
Sbjct: 415 VTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMP 474

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + +E V GALLGAC+   NTD+       L ++    SG YV+ S I+A    W++   
Sbjct: 475 MEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTN 534

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R +M+ KG+ K PG S + ++
Sbjct: 535 IRNIMKSKGLKKNPGASNVEVN 556


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 255/444 (57%), Gaps = 14/444 (3%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +  +CAN   ++ G +VH S  K  +       ++L+ MYA+CG LD A  VFD +  R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +V+W S+I+ Y++ G + EA+ LF  M  E   PD  T+ +VL +C   G L  GK V  
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           ++ +N M  N ++ +AL+DMY KCG++  A  VF  M  KD+++WN MI  Y++N L NE
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--------- 355
           A+ LF  M    + PD  TL  +L ACAS+ +LD GK V  +  + G   D         
Sbjct: 184 ALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 356 --IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
             + CG    A  +F+ +P  + ++W  MI+    +G  + A+  F  M + G    P++
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAG--IEPDE 300

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           V+FI +L AC H+GL+DEG R F++M     + PK EHY+C+VDL AR+G L+ A+ F++
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP + D  + GALL  C+   +  ++++V + + E+E  N+G YV+ +  +A  + W++
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420

Query: 534 SAKMRALMREKGVSKTPGCSWIGI 557
             K+R  +  +G+ K PGCSWI +
Sbjct: 421 VKKLRQKIGRRGLKKNPGCSWIEV 444



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 181/333 (54%), Gaps = 20/333 (6%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +++L+++M R G+ PD FT   V  +CA   +L +G  VH+ + +  +  +  V ++L+ 
Sbjct: 83  AIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMD 142

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+CG ++ A  VF E+  +D++SWN+MI GYSK     EA+ LFG M   E  PD  T
Sbjct: 143 MYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTT 201

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L  +L +C  L  L  GK V G +++N    +  + +AL+DMY KCG  V AR +FD + 
Sbjct: 202 LACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIP 261

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            KD++TW  MI  Y  +G  N AI  FN M+ AG+ PD+++ I +L AC+  G LD G W
Sbjct: 262 TKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEG-W 320

Query: 343 ------VDKYASQRGLRH-----DIFC--GSIDDALKVFEDMPVTNEVS-WNAMISALAF 388
                  D+   +  L H     D+    G +  A K  + MP+  + + W A++S    
Sbjct: 321 RFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGC-- 378

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             R H  + L E++++      P +  +  +L+
Sbjct: 379 --RIHHDVKLAEKVAEHVFELEPENTGYYVLLA 409



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 138/252 (54%), Gaps = 15/252 (5%)

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +VS+L +C + GD+ LG+ V G  VK  +       + L+DMY KCG L  A  VFD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            + VVTW ++I AYA+ GLS+EAI LF+ M   GV+PD  T+  VL ACA  G+L+ GK 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           V  Y  +  ++ +IF           CGS++DA  VF +MPV + +SWN MI   + N  
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
            +EAL LF  M  E    +P+  T   +L AC     +D G+ +   +  + G     + 
Sbjct: 181 PNEALSLFGDMVLE---MKPDGTTLACILPACASLASLDRGKEVHGHILRN-GFFSDQQV 236

Query: 452 YSCMVDLYARAG 463
            + +VD+Y + G
Sbjct: 237 ANALVDMYVKCG 248



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           + ++L  C    +++    +H  +  N +Q   F+   ++D+         A+ +F ++ 
Sbjct: 102 ITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMP 161

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +  ++N MI G +      + +L L+  M  L +KPD  T   +  +CA+L +L+ G 
Sbjct: 162 VKDIISWNTMIGGYSKN-SLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGK 219

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH  + + G   D  V+++L+ MY +CG    AR +FD I  +DL++W  MI+GY   G
Sbjct: 220 EVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHG 279

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG- 258
           +   A+  F  MR+    PDE++ +S+L +C   G L  G W    V++++ ++   +  
Sbjct: 280 FGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEG-WRFFNVMQDECNVKPKLEH 338

Query: 259 -SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
            + ++D+  + G L  A +   +M +  D   W A+++ 
Sbjct: 339 YACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/496 (36%), Positives = 275/496 (55%), Gaps = 47/496 (9%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR 166
           Y +M   G  PD +T+P +  + A   +     +VH+ V K G+  + HV+ SL+T YA 
Sbjct: 31  YARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAA 90

Query: 167 CGKLDSARKVFDEIRERDL-VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
            G   +AR +  E RERD  V WN++ISG+++     EA   F  M      P  +T VS
Sbjct: 91  GGDGAAARALLSE-RERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVS 149

Query: 226 VLGSCGD-LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC---------------- 268
           VL +CG   GD++LG  V G VV + +  +  + +AL+DMY +C                
Sbjct: 150 VLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVR 209

Query: 269 ---------------GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
                          G +  AR +F  M  +D V+W AMI  Y Q     EA+ +F  M+
Sbjct: 210 SVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQ 269

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            + V+ D+ T++ V++ACA +GAL++G+WV  Y S++G++ D F           CGSI+
Sbjct: 270 CSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIE 329

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            AL VF+DM   ++ +W A+I  LA NG   EA+ +F RM   G +  P++VTFIGVL+A
Sbjct: 330 RALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMI--GVSETPDEVTFIGVLTA 387

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLVD+GR  F  M  ++ + P   HY C++DL+ RAG ++EA D +++MP   +  
Sbjct: 388 CTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNST 447

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + G LL AC+   N+++ + V + LL+++  NS  Y + S I+A    W+D  ++R  + 
Sbjct: 448 IWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIM 507

Query: 543 EKGVSKTPGCSWIGID 558
           EKG+ K PGCS I ++
Sbjct: 508 EKGIKKEPGCSLIEMN 523



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 210/448 (46%), Gaps = 57/448 (12%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF-----LLIR 61
            Y+R LA   + D       LL  + +  S   V+ +H   ++ F    N      L+  
Sbjct: 30  GYARMLARGAMPDAYTF-PPLLKAVARGSSAAPVRAVHAH-VVKFGMGRNAHVATSLVTA 87

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
                D   A  L  +  R     +N +I G     +++  +   +  M R G  P   T
Sbjct: 88  YAAGGDGAAARALLSERERDTPVVWNALISGHNRC-RRFGEACCSFVDMARAGAAPTPVT 146

Query: 122 YPFVFISCANLLA-LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           Y  V  +C      +  G+ VH  V   G+  D  V ++L+ MYA C  ++SA K+FD +
Sbjct: 147 YVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGM 206

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL----------------------- 217
           + R +VSW S++SG +++G   EA +LFGRM E + +                       
Sbjct: 207 QVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFR 266

Query: 218 --------PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
                    DE T+VSV+ +C  LG L +G+WV  ++ +  + ++ ++G+ALIDMY KCG
Sbjct: 267 EMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCG 326

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
           ++  A  VF  M ++D  TW A+I   A NG   EAI +F+RM      PD++T IGVL+
Sbjct: 327 SIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLT 386

Query: 330 ACASIGALDLGKWVDKYASQR------------GLRHDIF--CGSIDDALKVFEDMPVT- 374
           AC   G +D G+  + + S R            G   D+F   G I +AL   + MP+T 
Sbjct: 387 ACTHAGLVDKGR--EFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTP 444

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERM 402
           N   W  +++A   +G +    L+ ER+
Sbjct: 445 NSTIWGTLLAACRVHGNSEIGELVTERL 472



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 159/335 (47%), Gaps = 17/335 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           L+ +  +C   ++  ++   M +  +     LL  +  L   + A  LF ++   +  ++
Sbjct: 186 LVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSW 245

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
             MI G   A  ++  +L+++ +M+   +  D FT   V  +CA L AL  G  V   + 
Sbjct: 246 TAMIDGYVQA-ARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMS 304

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           + G+  D  V ++LI MY++CG ++ A  VF ++  RD  +W ++I G +  GY +EA+E
Sbjct: 305 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIE 364

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK---MDLNFYMGSALID 263
           +F RM      PDE+T + VL +C   G  ++ K  E F+   +   +  N      +ID
Sbjct: 365 MFHRMIGVSETPDEVTFIGVLTACTHAG--LVDKGREFFLSMRETYNIAPNVVHYGCIID 422

Query: 264 MYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           ++G+ G +  A    D M +  +   W  ++ A   +G S    ++  R+    ++P+  
Sbjct: 423 LFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQ--MDPENS 480

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           T+  +LS        ++    +++   R LRH I 
Sbjct: 481 TVYTLLS--------NIYAKCNRWEDVRRLRHTIM 507



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 140/347 (40%), Gaps = 54/347 (15%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR++ + I  R LV+              ++AV  + RM     +PD  T   +L +   
Sbjct: 8   ARRLLEGIPRRCLVAAR------------EDAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
                  + V   VVK  M  N ++ ++L+  Y   G    AR +         V WNA+
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA-SIGALDLGKWVDKYASQRG 351
           I+ + +     EA   F  M  AG  P  +T + VLSAC    G + LG  V       G
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSG 175

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +  D+            C  ++ A K+F+ M V + VSW +++S L   GR  EA  LF 
Sbjct: 176 VLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFG 235

Query: 401 RMSKEGG------------AAR-----------------PNDVTFIGVLSACVHAGLVDE 431
           RM +               AAR                  ++ T + V++AC   G ++ 
Sbjct: 236 RMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEM 295

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           G  +   MS   G+   +   + ++D+Y++ G +  A D  + M  +
Sbjct: 296 GEWVRVYMSRQ-GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR 341


>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/482 (36%), Positives = 270/482 (56%), Gaps = 52/482 (10%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI 60
           M++ + A  + L F++     L     L+LL  C + KT++QIH+Q++   +   +F L 
Sbjct: 1   MMIISPANLQILPFSDPPYKFLQTHPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALS 60

Query: 61  RIIDL------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114
           ++I+        D +YA LLF  I +PN+  +N +IRGL+ + +    +++ Y  M   G
Sbjct: 61  KLIEFCVISPYGDLSYALLLFKSIGKPNQIIWNNIIRGLSLS-ESPILAIQYYVDMISSG 119

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
             P+ +TYPFV  SCA + + + G  +H  + K+G D D  V  SLITMY + G+L +AR
Sbjct: 120 FTPNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNAR 179

Query: 175 -------------------------------KVFDEIRERDLVSWNSMISGYSKMGYAKE 203
                                          ++FDEI  RD+VSWN+MI+GY++ G  +E
Sbjct: 180 LVFERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEE 239

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+  F  M      P+  TL+SVL +C   G L +G WV  ++ ++ ++ N  + +ALID
Sbjct: 240 ALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALID 299

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG L  A  +F+ + NK+V++WN MI  Y       EA+ LF +M  + V P+ +T
Sbjct: 300 MYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVT 359

Query: 324 LIGVLSACASIGALDLGKWVDKYASQ--RGLRHDIF----------CGSIDDALKVFEDM 371
           L+ +L ACA++GAL LGKW+  Y  +  + L ++            CG+I+ A ++F+ M
Sbjct: 360 LLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIFDGM 419

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              +  SWNAMIS  A +G+A  A+ LF RM+KEG    P+++TFIGVLSAC HAGL+D 
Sbjct: 420 NPKSLASWNAMISGFAMHGQADLAISLFSRMTKEG--LVPDNITFIGVLSACNHAGLLDL 477

Query: 432 GR 433
           G 
Sbjct: 478 GH 479



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 180/395 (45%), Gaps = 49/395 (12%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI--TMYARCGKLDSARKVFDEIRERDL 185
           +C NL  L     +HS V K GL         LI   + +  G L  A  +F  I + + 
Sbjct: 33  TCKNLKTLKQ---IHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIGKPNQ 89

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           + WN++I G S       A++ +  M    F P+  T   VL SC  +     GK + G 
Sbjct: 90  IIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQ 149

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVF--------------------------- 278
           ++K   D + ++ ++LI MY + G L  AR VF                           
Sbjct: 150 ILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRGFLDQA 209

Query: 279 ----DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
               D +  +DVV+WNAMI  Y Q+G   EA++ F  M  A V P+  TL+ VLSACA  
Sbjct: 210 LELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQS 269

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
           G+L +G WV  +  + GL  +I            CG +++AL +FE +   N +SWN MI
Sbjct: 270 GSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMI 329

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
                     EAL LF +M +      PNDVT + +L AC + G +  G+ +   +  + 
Sbjct: 330 GGYTHLSCYKEALGLFRQMLQSN--VEPNDVTLLSILPACANLGALGLGKWIHAYIDKNM 387

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +  +  ++ ++D+YA+ G++  A    + M  K
Sbjct: 388 KNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPK 422


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 252/448 (56%), Gaps = 14/448 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y     +C    AL  G  VH+ + K       +++  LI +Y RCG LD AR V D + 
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER++VSW +MISGYS+ G   EA+ELF RM       +E TL +VL SC     +   + 
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ 163

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V   VVK   + + ++GS+L+DMYGK G +  AR+VFD +  +D V+  A+I+ YAQ GL
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
            +EA+ LF ++  +G+  + +T   +L++ + + +L+ GK V     ++ L   I     
Sbjct: 224 DDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNS 283

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG +  + +VF++MP  + +SWNAM+     +G   E + LF  M++E    +
Sbjct: 284 LIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE---VK 340

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ VT + VLS C H GLVDEG  +FDL+      +    HY C++DL  R+G L +A D
Sbjct: 341 PDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALD 400

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +E MP +    + G+LLGAC+   N  V + V Q LL++E  N+GNYVI S I+A   M
Sbjct: 401 LIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGM 460

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           W D  ++R LM E  V+K P  SWI +D
Sbjct: 461 WKDVFRVRKLMLENTVTKEPAKSWIILD 488



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 213/431 (49%), Gaps = 40/431 (9%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H  M+    + P +L  R+I L       + A  +   +   N  ++  MI G + +
Sbjct: 61  RQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQS 120

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
             +++ +L+L+ +M R G K + FT   V  SC    ++     VHS V K   +    V
Sbjct: 121 -GRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFV 179

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SL+ MY + G +  ARKVFD + ERD VS  ++ISGY+++G   EA++LF ++     
Sbjct: 180 GSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGM 239

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             + +T  ++L S   L  L  GK V G +++ ++     + ++LIDMY KCG L+ +RR
Sbjct: 240 QCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRR 299

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VFD M  +  ++WNAM+  Y ++G+  E + LF  M    V PD +TL+ VLS C+  G 
Sbjct: 300 VFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGL 358

Query: 337 LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           +D G              DIF       L V E   V +   +  +I  L  +G+  +AL
Sbjct: 359 VDEGL-------------DIF------DLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKAL 399

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GRRLFDLMSSSFGLIPKSEHY 452
            L E M  E     P    +  +L AC VH  + V E   ++L D+   + G      +Y
Sbjct: 400 DLIEHMPFE-----PTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAG------NY 448

Query: 453 SCMVDLYARAG 463
             + ++YA AG
Sbjct: 449 VILSNIYAAAG 459


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/501 (32%), Positives = 277/501 (55%), Gaps = 20/501 (3%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQ---MKRLGLKPDNFTYPFVFISC 129
           ++F ++   N  ++  +I GL  A   Y+     Y+    ++++G   D +T+     +C
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRA--GYNKEALAYFSDMWIQKVGC--DTYTFSSALKAC 179

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A+  ALN+G  +H    K G      V+++L TMY +CGKLD   ++F+ + +RD+VSW 
Sbjct: 180 ADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWT 239

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I    ++G  + AV+ F RMRE +  P+E T  +V+  C  LG +  G+ +   V++ 
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR 299

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  +  + ++++ MY KC  L  A  VF  +  +D+++W+ MI+ YAQ G   EA    
Sbjct: 300 GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYL 359

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           + M+  G  P++     VLS C ++  L+ GK +  +    GL  +             C
Sbjct: 360 SWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKC 419

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GSI +A K+F++    N VSW AMI+  A +G + EA+ LF+++ K G   RP+ VTFI 
Sbjct: 420 GSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVG--LRPDSVTFIA 477

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL+AC HAGLVD G   F+ +S    + P  +HY CM+DL  RAG L++A   ++ MP +
Sbjct: 478 VLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQ 537

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D++V   LL AC+   + D  +R  + +L+++ + +  ++  + ++A    W ++A++R
Sbjct: 538 RDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVR 597

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
            +M+ KGV K PG SWI   D
Sbjct: 598 KMMKSKGVVKEPGWSWIKFKD 618



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 206/395 (52%), Gaps = 27/395 (6%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           S LK C  +  +   ++IH Q L       +F+   +  + +     +Y   LF  +++ 
Sbjct: 174 SALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQR 233

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I       Q+  +++K + +M+   + P+ FT+  V   CA L  +  G  +
Sbjct: 234 DVVSWTTIIMSNVQIGQE-ENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQL 292

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V + GL +   V++S++ MY++C +LD A  VF  +  RD++SW++MISGY++ G  
Sbjct: 293 HAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCG 352

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA +    MR E   P+E    SVL  CG++  L  GK +   V+   ++ N  + SAL
Sbjct: 353 EEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSAL 412

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I+MY KCG++  A ++FD     ++V+W AMI  YA++G S EAI LF ++   G+ PD 
Sbjct: 413 INMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDS 472

Query: 322 ITLIGVLSACASIGALDLG----------KWVDKYASQRGLRHDIFC--GSIDDALKVFE 369
           +T I VL+AC+  G +DLG            +       G   D+ C  G ++DA  + +
Sbjct: 473 VTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQ 532

Query: 370 DMPVT-NEVSWNAMISALAFNG------RAHEALL 397
            MP   ++V W+ ++ A   +G      RA E +L
Sbjct: 533 SMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKIL 567



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 226/485 (46%), Gaps = 48/485 (9%)

Query: 52  IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM- 110
           +Q+ N +L  ++     N A  LF ++ + +E ++  +I G        + +L L+ +M 
Sbjct: 1   MQEINLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNG-MNTTEALSLFSKMW 59

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
              GL  D F       +C   ++++ G S+H    K        V  +L+ MY + GK+
Sbjct: 60  VEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKV 119

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           D    VF E+  R++VSW ++I+G  + GY KEA+  F  M  ++   D  T  S L +C
Sbjct: 120 DEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKAC 179

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
            D G L  G+ +    +K       ++ + L  MY KCG L    R+F++M  +DVV+W 
Sbjct: 180 ADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWT 239

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            +I +  Q G    A+  F RM+   V+P++ T   V+S CA++G ++ G+ +  +  +R
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR 299

Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           GL   +            C  +D A  VF+ +   + +SW+ MIS  A  G   EA    
Sbjct: 300 GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYL 359

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL------------------MSS 441
             M +EG   RPN+  F  VLS C +  ++++G++L                     M S
Sbjct: 360 SWMRREG--PRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYS 417

Query: 442 SFGLIPKSEH------------YSCMVDLYARAGHLSEAWDFVERMPE---KVDEIVLGA 486
             G I ++              ++ M++ YA  G+  EA D  +++P+   + D +   A
Sbjct: 418 KCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIA 477

Query: 487 LLGAC 491
           +L AC
Sbjct: 478 VLAAC 482


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 281/499 (56%), Gaps = 21/499 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGL---TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           LF ++   N  ++  MI G    +  W+    +++L  +M R+G KPD +    V  SC 
Sbjct: 300 LFDRLDVKNIISWTTMIAGYMQNSYDWE----AVELVGEMFRMGWKPDEYACSSVLTSCG 355

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           ++ AL HG  +HS V K+ L+ D+ V+++LI MY++C  LD A++VFD +    +V +N+
Sbjct: 356 SVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNA 415

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GYS+ GY   A+E+F  MR +   P  +T VS+LG    L  L L K + G ++K  
Sbjct: 416 MIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYG 475

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
             L+ +  SALID+Y KC  +  AR VF+   NKD+V WN++ + Y     S EA  L++
Sbjct: 476 FSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYS 535

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            ++ +   P++ T   + +A + + +L  G+       + GL  D F           CG
Sbjct: 536 DLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCG 595

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+++A K+F      +   WN+MIS  A +G+  EAL +FE M        PN VTF+ V
Sbjct: 596 SVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNN--INPNYVTFVSV 653

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H G V++G + ++ M + +G+ P  EHY+ +V L  RAG L+EA +F+E+M  + 
Sbjct: 654 LSACSHVGFVEDGLQHYNSM-ARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRP 712

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
             +V  +LL AC+   N ++++   ++ + I+  +SG+YV+ S IFA+  MW D  ++R 
Sbjct: 713 AALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRL 772

Query: 540 LMREKGVSKTPGCSWIGID 558
            M   GV K PG SWI ++
Sbjct: 773 KMDVNGVVKEPGQSWIEVN 791



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 229/464 (49%), Gaps = 41/464 (8%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQIS 79
           L +LL    S K++   +++H Q+++  +Q      N LL     +     A  LF ++ 
Sbjct: 43  LANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMP 102

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYY-QMKRLGL-KPDNFTYPFVFISCANLLALNH 137
             N  +++ ++   T     Y+    LY+ + +R  + K + +    +  +C        
Sbjct: 103 NRNLVSWSSVVSMYTQL--GYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEP 160

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  VHS V K G  ED +V  SL+ +YA+ G++D AR VFD +  +  V+W ++I+GY+K
Sbjct: 161 GSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTK 220

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDLNF 255
            G ++ +++LF  M E   +PD+  L S+L +C  LG L  GK +  +V+++  KMD++ 
Sbjct: 221 SGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVST 280

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           Y  + LID Y KCG +   + +FD +  K++++W  MI  Y QN    EA+ L   M   
Sbjct: 281 Y--NVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRM 338

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           G  PD+     VL++C S+ AL  G+ +  Y  +  L HD F           C ++DDA
Sbjct: 339 GWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDA 398

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV----- 419
            +VF+ +   + V +NAMI   +  G    AL +F+ M  +     P+ +TF+ +     
Sbjct: 399 KRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLK--HVSPSFLTFVSLLGLSA 456

Query: 420 ------LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
                 LS  +H  ++  G  L    SS+  LI      SC+ D
Sbjct: 457 ALLCLQLSKQIHGLIIKYGFSLDKFTSSA--LIDVYSKCSCIRD 498


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 191/592 (32%), Positives = 300/592 (50%), Gaps = 61/592 (10%)

Query: 22  LLREKLLSLLKKCPSTKTV---QQIHTQML-INFIQKPNFLLIRIIDLKDFNY---ASLL 74
           L+   + SLL  C   K++   +Q+H  ++ + F Q P  +   +     FN    A ++
Sbjct: 172 LIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVI 231

Query: 75  FHQISRPNEYAFNVMIRGLTTA--WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
               +  + + +N++I         QK   +L  Y QM + G++PDNFTYP V  +C   
Sbjct: 232 TENSNILHPFPWNLLISSYVRNGFCQK---ALSAYKQMVKKGIRPDNFTYPSVLKACGEE 288

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           L L  G  VH S+    +     V ++LI+MY +CGK+  AR +FD+I ERD VSWNSMI
Sbjct: 289 LDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMI 348

Query: 193 SGYSKMGYAKEAVELFGRMREE--------------------------EFLP-------- 218
           S Y+ MG   EA ELFG M  E                          E L         
Sbjct: 349 SVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSH 408

Query: 219 -DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            D + L+  LG+C  +GD  LGK +  F +++       + ++LI MY +C  L  A  +
Sbjct: 409 LDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLL 468

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F  M  K +++WN++I+       S EA  L   M  +G+ P+ +T+  VL  CA +  L
Sbjct: 469 FQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANL 528

Query: 338 DLGKWVDKYASQRGLRHDIF------------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
             GK    Y ++R    D               G + +A +VF+ +   +++++ +MI+ 
Sbjct: 529 QHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAG 588

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
               G    AL LFE M+      +P+ +T I VLSAC H+GLV +G+ LF+ M S +GL
Sbjct: 589 YGMQGEGQAALKLFEEMNN--FQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGL 646

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EH++CM DL+ RAG L++A + +  MP K    +   L+GAC+  +NT++ +   +
Sbjct: 647 TPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAE 706

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            LLE++  N G YV+ + ++A    W+  AK+R  MR+ GV K PGC+W+ +
Sbjct: 707 KLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDV 758


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 264/446 (59%), Gaps = 19/446 (4%)

Query: 125  VFISCANLLALN--HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
              ++C N+  +   H +   +SV    L     V++ L+ +Y     L  A  +FDE+ +
Sbjct: 1088 TLLNCKNICQIKQLHALITTNSVLYNNLT----VANKLLYVYVHHKCLTDAYALFDEMPQ 1143

Query: 183  RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
            ++ VSW+ MI G+ K+G   +  + F  +      PD  TL  V+ +C D   L +G+ +
Sbjct: 1144 KNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLI 1203

Query: 243  EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
               V+K  + L+ ++ +AL+DMY KC  +  A+ +FD M +KD+VTW  MI  YA+ G +
Sbjct: 1204 HCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNA 1263

Query: 303  NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
             E+++LF+ ++  G  PDKI ++ +++ACA +GA++  ++V +Y ++     D+      
Sbjct: 1264 KESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAM 1323

Query: 358  ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                  CG +D A ++F++M   N +SW+AMI+A  ++G+  +AL LF  M   G    P
Sbjct: 1324 IDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSG--ILP 1381

Query: 412  NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
            N++TF+ +L AC HAGLV++G  L  LM  SFG+ P  +H++CMVDL  RAG L+EA+ F
Sbjct: 1382 NNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRF 1441

Query: 472  VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
            +E M  + DE +  +LLGAC+  K  D++++  + LLE++  N GNY++ S I+AN   W
Sbjct: 1442 IENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYANAGQW 1501

Query: 532  DDSAKMRALMREKGVSKTPGCSWIGI 557
             D AK+R LM ++ + K PG +WI +
Sbjct: 1502 KDVAKIRDLMTKRKLKKIPGYTWIEL 1527



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 248/446 (55%), Gaps = 28/446 (6%)

Query: 14   FTELNDPSLLREKLLSLLKKCPSTKTVQQIH-----TQMLINFIQKPNFLLIRIIDLKDF 68
            F+   DP+ L    +S L  C +   ++Q+H       +L N +   N LL   +  K  
Sbjct: 1076 FSFFMDPNCL----ISTLLNCKNICQIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCL 1131

Query: 69   NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
              A  LF ++ + N  ++++MI G     + +    K + ++ R G++PDN+T PFV  +
Sbjct: 1132 TDAYALFDEMPQKNPVSWSIMIGGFVKVGE-FMQCYKTFKELIRNGVQPDNYTLPFVIKA 1190

Query: 129  CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            C + +AL+ G  +H  V K GL  D  V  +L+ MYA+C  ++ A+ +FD +  +DLV+W
Sbjct: 1191 CRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTW 1250

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
              MI GY++ G AKE++ LF  +REE F+PD+I +VS++ +C  LG +   ++V  +V +
Sbjct: 1251 TVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNR 1310

Query: 249  NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
            N+  L+  +G+A+IDMY KCG +  AR +FD M +K+V++W+AMI AY  +G   +A+ L
Sbjct: 1311 NRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALEL 1370

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF- 357
            F  M  +G+ P+ IT + +L AC+  G ++ G  +     + +  +  ++H     D+  
Sbjct: 1371 FPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLG 1430

Query: 358  -CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDV 414
              G + +A +  E+M V  +E  W++++ A     R H+ + L E+ +K     +P N  
Sbjct: 1431 RAGQLTEAFRFIENMTVEKDEGLWSSLLGAC----RIHKRIDLAEKAAKSLLELQPQNPG 1486

Query: 415  TFIGVLSACVHAGLVDEGRRLFDLMS 440
             +I + +   +AG   +  ++ DLM+
Sbjct: 1487 NYILLSNIYANAGQWKDVAKIRDLMT 1512


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 298/547 (54%), Gaps = 23/547 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINF-----IQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           S+LK C     +   ++IH   +I F     +   N L+   +   D + A +LF ++ +
Sbjct: 203 SVLKTCAGVSDIARGKEIHAH-VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPK 261

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +  ++N MI G           L+L+  M+ L + PD  T   V  +C  L     G  
Sbjct: 262 RDRISWNAMISGYFENGGGL-EGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH  V K     D  +++SLI MY+  G+L+ A  VF  +  +D+VSW +MI+       
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             +AVE +  M  E  LPDEITLVSVL +C  +G L LG  +    +K  +  +  + ++
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KC  +  A  VF  +  K+VV+W ++I     N  S EA++ F +MK + + P+
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPN 499

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--IDDALKVFEDMPVTNE-- 376
            +TLI VLSACA IGAL  GK +  +A + G+  D F  +  +D  ++    +P  N+  
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 377 ------VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
                  +WN +++  A  G+A  A+ LF++M +      P+++TFI +L AC  +G+V 
Sbjct: 560 SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL--EIHPDEITFISLLCACSKSGMVT 617

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F++M + + L P  +HY+C+VD+  RAG L +A+DF++ MP + D  + GALL A
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  +N ++ +   + + E ++ + G Y++   ++A    WD  +K+R+LMRE+G+S  P
Sbjct: 678 CRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADP 737

Query: 551 GCSWIGI 557
           GCSW+ I
Sbjct: 738 GCSWVEI 744



 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 257/475 (54%), Gaps = 41/475 (8%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           + +R  +L D  Y   +F ++S  + +++NV++ G   A   +  +L LY++M    ++P
Sbjct: 141 MFVRFGNLLDAWY---VFGKMSERDVFSWNVLVGGYAKA-GCFDEALNLYHRMLWAEIRP 196

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           + +T+P V  +CA +  +  G  +H+ V + G + D  V ++LITMY +CG + +AR +F
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D++ +RD +SWN+MISGY + G   E +ELF  MRE    PD IT+ +V  +C  L +  
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LG+ V G+VVK++   +  M ++LI MY   G L  A  VF  M +KDVV+W AMI +  
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
            + L  +A+  +  M+  G+ PD+ITL+ VLSACA IG LDLG  + + A + GL   + 
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVI 436

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      C  +D+AL+VF ++   N VSW ++I  L  N R+ EALL F +M +  
Sbjct: 437 VSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-- 494

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRL----------FDLMSSSFGLIPKSEHYSCMV 456
            + +PN VT I VLSAC   G +  G+ +          FD      G +P +     ++
Sbjct: 495 -SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFD------GFLPNA-----IL 542

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           D+Y R G    A +  +   +K D      LL    +Q    ++  +   +LE+E
Sbjct: 543 DMYVRCGRKVPALN--QFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 179/334 (53%), Gaps = 14/334 (4%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           + ++L++M+ R G L  A  VF ++ ERD+ SWN ++ GY+K G   EA+ L+ RM   E
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P+  T  SVL +C  + D+  GK +   V++   + +  +G+ALI MY KCG +  AR
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +FD M  +D ++WNAMI+ Y +NG   E + LF+ M+   V+PD IT+  V SAC  + 
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 336 ALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMIS 384
              LG+ V  Y  +     DI             G +++A  VF  M   + VSW AMI+
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
           +L  +    +A+  ++ M  EG    P+++T + VLSAC   G +D G RL ++   + G
Sbjct: 374 SLVSHKLPFKAVETYKMMELEG--ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT-G 430

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L+      + ++D+Y++   +  A +    +  K
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK 464



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 122/257 (47%), Gaps = 26/257 (10%)

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G  V   V  +K  L   +G+AL+ M+ + G L+ A  VF  M  +DV +WN ++  YA+
Sbjct: 116 GSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAK 175

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--- 355
            G  +EA+ L++RM +A + P+  T   VL  CA +  +  GK +  +  + G   D   
Sbjct: 176 AGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDV 235

Query: 356 --------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                   + CG I +A  +F+ MP  + +SWNAMIS    NG   E L LF  M +   
Sbjct: 236 GNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL-- 293

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVDLYAR 461
           +  P+ +T   V SAC    L+D  R    L     G + KSE        + ++ +Y+ 
Sbjct: 294 SVDPDLITMTTVASAC---ELLDNER----LGRGVHGYVVKSEFGGDISMNNSLIQMYSS 346

Query: 462 AGHLSEAWDFVERMPEK 478
            G L EA     RM  K
Sbjct: 347 LGRLEEAETVFSRMESK 363


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 311/574 (54%), Gaps = 33/574 (5%)

Query: 13  AFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDF 68
           A   L+  +LL   LL L     S K  QQ H+Q+L N   +  FL  R+I       D 
Sbjct: 20  AIVSLSPHNLLH--LLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDS 77

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
             + L+F  +   N Y +N +I G     Q + +++ L+ QM R  L PD++T   +   
Sbjct: 78  IMSKLVFDSVHTKNVYLWNSLINGYVKNHQ-FDNAIVLFRQMGRC-LLPDDYTLATISKV 135

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
              +  L  G  +H    +IG   D  V +S+++MY RC +   A KVFDE+ +R++ S+
Sbjct: 136 SGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSF 195

Query: 189 NSMISGYSKMGYAKEAV-----ELFGRMREEEFLPDEITLVSVLGSCGDL-GDLVLGKWV 242
           N +ISG + +G    ++       F RM+ + +  D  T+ S+L  C D  G    G+ +
Sbjct: 196 NVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGREL 255

Query: 243 EGFVVKNKMDL----NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
             ++VKN +DL    + +MGS+LIDMY +   LV +RRVFD M ++++  W AMI  Y Q
Sbjct: 256 HCYLVKNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQ 315

Query: 299 NGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWV---------DKYAS 348
           NG    A++LF  M+    + P++++L+ VL AC  +  L  GK V         + Y S
Sbjct: 316 NGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYIS 375

Query: 349 QRGLRHDIF--CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKE 405
            R    D++  CGS+D A +VF++   + + ++W+++ISA   +G+  EAL  +  M ++
Sbjct: 376 LRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQ 435

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   +P+ +T +GVLSAC  +GLVDEG  +++ +++ + + P  E   C+VDL  R+G L
Sbjct: 436 G--IKPDMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQL 493

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            +A DF+  MP      V G+LL A     N+       + LLE+E  N  NY+  S  +
Sbjct: 494 DQALDFIREMPIIPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTY 553

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           A+ + WD+  ++R++M+E+G+ K PG SWI I D
Sbjct: 554 ASSRRWDEITEVRSMMKERGLRKVPGISWITISD 587


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 298/547 (54%), Gaps = 23/547 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINF-----IQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           S+LK C     +   ++IH   +I F     +   N L+   +   D + A +LF ++ +
Sbjct: 203 SVLKTCAGVSDIARGKEIHAH-VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPK 261

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +  ++N MI G           L+L+  M+ L + PD  T   V  +C  L     G  
Sbjct: 262 RDRISWNAMISGYFENGGGL-EGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRG 320

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH  V K     D  +++SLI MY+  G+L+ A  VF  +  +D+VSW +MI+       
Sbjct: 321 VHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKL 380

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             +AVE +  M  E  LPDEITLVSVL +C  +G L LG  +    +K  +  +  + ++
Sbjct: 381 PFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNS 440

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KC  +  A  VF  +  K+VV+W ++I     N  S EA++ F +MK + + P+
Sbjct: 441 LIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPN 499

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--IDDALKVFEDMPVTNE-- 376
            +TLI VLSACA IGAL  GK +  +A + G+  D F  +  +D  ++    +P  N+  
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 377 ------VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
                  +WN +++  A  G+A  A+ LF++M +      P+++TFI +L AC  +G+V 
Sbjct: 560 SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL--EIHPDEITFISLLCACSKSGMVT 617

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F++M + + L P  +HY+C+VD+  RAG L +A+DF++ MP + D  + GALL A
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  +N ++ +   + + E ++ + G Y++   ++A    WD  +K+R+LMRE+G+S  P
Sbjct: 678 CRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADP 737

Query: 551 GCSWIGI 557
           GCSW+ I
Sbjct: 738 GCSWVEI 744



 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 257/475 (54%), Gaps = 41/475 (8%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           + +R  +L D  Y   +F ++S  + +++NV++ G   A   +  +L LY++M    ++P
Sbjct: 141 MFVRFGNLLDAWY---VFGKMSERDVFSWNVLVGGYAKA-GCFDEALNLYHRMLWAEIRP 196

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           + +T+P V  +CA +  +  G  +H+ V + G + D  V ++LITMY +CG + +AR +F
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D++ +RD +SWN+MISGY + G   E +ELF  MRE    PD IT+ +V  +C  L +  
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LG+ V G+VVK++   +  M ++LI MY   G L  A  VF  M +KDVV+W AMI +  
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
            + L  +A+  +  M+  G+ PD+ITL+ VLSACA IG LDLG  + + A + GL   + 
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVI 436

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      C  +D+AL+VF ++   N VSW ++I  L  N R+ EALL F +M +  
Sbjct: 437 VSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-- 494

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRL----------FDLMSSSFGLIPKSEHYSCMV 456
            + +PN VT I VLSAC   G +  G+ +          FD      G +P +     ++
Sbjct: 495 -SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFD------GFLPNA-----IL 542

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           D+Y R G    A +  +   +K D      LL    +Q    ++  +   +LE+E
Sbjct: 543 DMYVRCGRKVPALN--QFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 179/334 (53%), Gaps = 14/334 (4%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           + ++L++M+ R G L  A  VF ++ ERD+ SWN ++ GY+K G   EA+ L+ RM   E
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P+  T  SVL +C  + D+  GK +   V++   + +  +G+ALI MY KCG +  AR
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +FD M  +D ++WNAMI+ Y +NG   E + LF+ M+   V+PD IT+  V SAC  + 
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 336 ALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMIS 384
              LG+ V  Y  +     DI             G +++A  VF  M   + VSW AMI+
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
           +L  +    +A+  ++ M  EG    P+++T + VLSAC   G +D G RL ++   + G
Sbjct: 374 SLVSHKLPFKAVETYKMMELEG--ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT-G 430

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L+      + ++D+Y++   +  A +    +  K
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK 464



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 122/257 (47%), Gaps = 26/257 (10%)

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G  V   V  +K  L   +G+AL+ M+ + G L+ A  VF  M  +DV +WN ++  YA+
Sbjct: 116 GSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAK 175

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--- 355
            G  +EA+ L++RM +A + P+  T   VL  CA +  +  GK +  +  + G   D   
Sbjct: 176 AGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDV 235

Query: 356 --------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                   + CG I +A  +F+ MP  + +SWNAMIS    NG   E L LF  M +   
Sbjct: 236 GNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL-- 293

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVDLYAR 461
           +  P+ +T   V SAC    L+D  R    L     G + KSE        + ++ +Y+ 
Sbjct: 294 SVDPDLITMTTVASAC---ELLDNER----LGRGVHGYVVKSEFGGDISMNNSLIQMYSS 346

Query: 462 AGHLSEAWDFVERMPEK 478
            G L EA     RM  K
Sbjct: 347 LGRLEEAETVFSRMESK 363


>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
 gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 281/548 (51%), Gaps = 79/548 (14%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           L+  LL  +++C   K  ++IH Q++ + +   + ++         N A+  F +     
Sbjct: 8   LKWVLLDSIQRCKKLKIFKKIHAQLITSGVVSNDLVV---------NRAAEFFAKGPNFA 58

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           +YA + +                   QM+  G  P  FT+P V  SCA  +A++ G  VH
Sbjct: 59  DYACDFL------------------SQMED-GFLPYMFTFPAVLKSCAKFMAVDEGRQVH 99

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K+    D +V +SL+  Y+ CG LD A +VFDE+  RD VSW  +I          
Sbjct: 100 GVIAKMDFVCDIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVIYP-------- 151

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
                                       G  G L+LGK + G +++    L   + +AL+
Sbjct: 152 ----------------------------GIKGYLILGKGIHGLIIERGFGLGLEVSNALM 183

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KC +L   ++VFD +  KD+V+W ++I    Q     E + LF  ++ +G+ PD I
Sbjct: 184 DMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGI 243

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            L  VLSA AS GALD G+ V +Y   + ++ DI            CG I+ A+++F  M
Sbjct: 244 ILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVM 303

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  N ++WNAM++ LA +G   +AL LFE M +EG   RPN+VTF+  L+AC H G V E
Sbjct: 304 PHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREG--MRPNEVTFLVTLTACCHCGFVGE 361

Query: 432 GRRLFDLM-SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           GRR F  M S  + L P+ EHY CMVDL  RAG L EA +  + MP   D  ++GALL  
Sbjct: 362 GRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVRIMGALLST 421

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   N ++ + ++  L+E +S +SG YV+ S I A  + W D  ++R LM+  G+ KTP
Sbjct: 422 CKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRLMK-MGIEKTP 480

Query: 551 GCSWIGID 558
           G S I +D
Sbjct: 481 GSSVIEVD 488


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 292/538 (54%), Gaps = 35/538 (6%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+     L   + +  LF      +  ++N MI   + +  ++S +L  +  M   G+
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQS-DRFSEALAFFRLMVLEGV 293

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSAR 174
           + D  T   V  +C++L  L+ G  +H+ V +   L E+  V  +L+ MY  C +++S R
Sbjct: 294 ELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGR 353

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDL 233
           +VFD I  R +  WN+MISGY++ G  ++A+ LF  M +    LP+  T+ SV+ +C   
Sbjct: 354 RVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHC 413

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
                 + + G+ VK     + Y+ +AL+DMY + G +  +  +FD+M  +D V+WN MI
Sbjct: 414 EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMI 473

Query: 294 TAYAQNGLSNEAIMLFNRMKY-----------------AGVNPDKITLIGVLSACASIGA 336
           T Y  +G  + A++L + M+                      P+ ITL+ VL  CA++ A
Sbjct: 474 TGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAA 533

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           +  GK +  YA +  L  DI            CG ++ + +VF +MP  N ++WN +I A
Sbjct: 534 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 593

Query: 386 LAFNGRAHEALLLFERMSKE---GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
              +G+  EAL LF+ M  E   GG A+PN+VTFI V +AC H+GL+ EG  LF  M   
Sbjct: 594 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 653

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQ 501
            G+ P S+HY+C+VDL  RAG L EA++ V  MP + D++    +LLGAC+  +N ++ +
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGE 713

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
              + LL +E + + +YV+ S I+++  +W+ + ++R  MR+ GV K PGCSWI   D
Sbjct: 714 VAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRD 771



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 237/455 (52%), Gaps = 47/455 (10%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL- 132
           +F +I+  ++ ++N  I  L   ++K+  +L+ +  M+   ++  +FT   V ++C+NL 
Sbjct: 150 VFDRITDRDQVSWNSFIAALCR-FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG 208

Query: 133 --LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               L  G  +H    ++G D+    +++L+ MYA+ G++D ++ +F+   +RD+VSWN+
Sbjct: 209 VMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MIS +S+     EA+  F  M  E    D +T+ SVL +C  L  L +GK +  +V++N 
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN 327

Query: 251 MDL--NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
            DL  N ++GSAL+DMY  C  +   RRVFD ++ + +  WNAMI+ YA+NGL  +A++L
Sbjct: 328 -DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 386

Query: 309 FNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC--------- 358
           F  M K AG+ P+  T+  V+ AC    A    + +  YA + G + D +          
Sbjct: 387 FIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYS 446

Query: 359 --GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK------------ 404
             G +D +  +F+ M V + VSWN MI+    +GR   AL+L   M +            
Sbjct: 447 RMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDN 506

Query: 405 ---EGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-----DLMSSSFGLIPKSEHYSCMV 456
              +GG  +PN +T + VL  C     + +G+ +      ++++S   +       S +V
Sbjct: 507 DDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITV------GSALV 560

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           D+YA+ G L+ +      MP K + I    L+ AC
Sbjct: 561 DMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMAC 594



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 195/387 (50%), Gaps = 19/387 (4%)

Query: 95  TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
           T    +  ++  Y +M   G +PDNF +P V  + + L  L  G  +H++  K G     
Sbjct: 68  TRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSS 127

Query: 155 -HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V+++L+ MY +CG +    KVFD I +RD VSWNS I+   +    ++A+E F  M+ 
Sbjct: 128 VTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQM 187

Query: 214 EEFLPDEITLVSVLGSCGDLG---DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           E       TLVSV  +C +LG    L LGK + G+ ++   D   +  +AL+ MY K G 
Sbjct: 188 ENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGR 246

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  ++ +F++ V++D+V+WN MI++++Q+   +EA+  F  M   GV  D +T+  VL A
Sbjct: 247 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA 306

Query: 331 CASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVS 378
           C+ +  LD+GK +  Y  +   L  + F GS           ++   +VF+ +       
Sbjct: 307 CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIEL 366

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WNAMIS  A NG   +AL+LF  M K  G   PN  T   V+ ACVH         +   
Sbjct: 367 WNAMISGYARNGLDEKALILFIEMIKVAGLL-PNTTTMASVMPACVHCEAFSNKESIHGY 425

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHL 465
            +   G        + ++D+Y+R G +
Sbjct: 426 -AVKLGFKEDRYVQNALMDMYSRMGKM 451



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 16/291 (5%)

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           R   SW   +   ++    +EA+  +  M      PD     +VL +   L DL  G+ +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 243 EGFVVK-NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
               VK      +  + + L++MYGKCG +    +VFD + ++D V+WN+ I A  +   
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYA----SQRGLRH 354
             +A+  F  M+   +     TL+ V  AC+++G    L LGK +  Y+     Q+   +
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN 234

Query: 355 DIF------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
           +         G +DD+  +FE     + VSWN MIS+ + + R  EAL  F  M  EG  
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG-- 292

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
              + VT   VL AC H   +D G+ +   +  +  LI  S   S +VD+Y
Sbjct: 293 VELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMY 343



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 53/289 (18%)

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           ++   +W   + +  ++    EAI  +  M  +G  PD      VL A + +  L  G+ 
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 343 VDKYASQRGLRHDIF------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           +   A + G                  CG I D  KVF+ +   ++VSWN+ I+AL    
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFE 173

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR----------RLFD--- 437
           +  +AL  F  M  E      +  T + V  AC + G++   R          R+ D   
Sbjct: 174 KWEQALEAFRAMQMEN--MELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT 231

Query: 438 -------LMSSSFGLIPKSE------------HYSCMVDLYARAGHLSEAWDFVERM--- 475
                   M +  G +  S+             ++ M+  ++++   SEA  F   M   
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE----IESSNSGNYVI 520
             ++D + + ++L AC   +  DV + +   +L     IE+S  G+ ++
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALV 340


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/562 (32%), Positives = 294/562 (52%), Gaps = 32/562 (5%)

Query: 21  SLLREKLLSLLKKCP-------STKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNY--- 70
           SL++  L++ + +C        +++ +   H   L++F+ +P+ +    I    F +   
Sbjct: 40  SLVKNGLIAHVYQCNILLQAYINSQALSDAHK--LLHFMPQPSVVSYNTILSGYFKFGLV 97

Query: 71  --ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
             A  LF   S+ + +++N+++ G      K    L  + +M+   ++PDNFTY  +   
Sbjct: 98  SEAIKLFDGTSKRDCHSWNIVLSGCVKN-HKLGEGLTHFMKMRCSSVRPDNFTYAIIIPC 156

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C     L  G  VH+ + K+  D D  +  +L+ MYA  G++  ARKVFD +  R LV+W
Sbjct: 157 CD----LGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTW 212

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N+MIS YSK G   +++ LF ++  E    DE T   VL        +     V   +++
Sbjct: 213 NAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIE 272

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
                + +  +AL+++Y KCG +  A R+F+ + ++DVV+W  +I  + Q+G   EA+ L
Sbjct: 273 RGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWL 332

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH----------DIF- 357
           F +M+   + P+  T  G+L ACA   A   G+       + GL            D++ 
Sbjct: 333 FYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYS 392

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVT 415
            CG + DAL+ F++MP  +  SWN +I   A NG   +AL L+  M   G +   PN+VT
Sbjct: 393 KCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVT 452

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+GVL AC H GL+ EG   F  M     + P +EHY+CMVDL  RAG L EA   +  +
Sbjct: 453 FVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILAL 512

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P K D ++ GALLGAC+   +  +++R  + L   E  NS NYV+ +  + ++  W ++ 
Sbjct: 513 PIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAV 572

Query: 536 KMRALMREKGVSKTPGCSWIGI 557
           ++R +M  +GV KT GCSW+ I
Sbjct: 573 EIREVMEARGVEKTAGCSWVEI 594



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 190/409 (46%), Gaps = 53/409 (12%)

Query: 116 KPDNFTYPFVFISCANLLALNH---GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           KP + T    +I    L +  H      +H+S+ K GL    +  + L+  Y     L  
Sbjct: 9   KPLHSTPQHKYIRSIELYSHGHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSD 68

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG----------------------- 209
           A K+   + +  +VS+N+++SGY K G   EA++LF                        
Sbjct: 69  AHKLLHFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKL 128

Query: 210 --------RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
                   +MR     PD  T   ++  C    DL  G+ V   +VK   DL+ ++G+ L
Sbjct: 129 GEGLTHFMKMRCSSVRPDNFTYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNL 184

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY + G +  AR+VFD M ++ +VTWNAMI+ Y++ G  +++I LF ++   G++ D+
Sbjct: 185 LRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADE 244

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T   VL+  A+   +     V     +RG   D F           CG +  A ++FE+
Sbjct: 245 YTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEE 304

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +P  + VSW  +I     +G   EA+ LF +M  + G   PN  TF G+L AC  A    
Sbjct: 305 IPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQM--QLGDIEPNSFTFGGLLGACADANAFQ 362

Query: 431 EGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEK 478
           +GR    L+   FGL+       S +VD+Y++ G + +A    + MPE+
Sbjct: 363 KGRHFHGLV-LKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPER 410


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 281/497 (56%), Gaps = 18/497 (3%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLK-PDNFTYPFVFISCA 130
           +LF +I   +  ++  +I G   A Q +   +L+++ +M   G   P+ F +   F +C 
Sbjct: 208 MLFERIKDKDLISWGSIIAGF--AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACG 265

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            + +  +G  +H    K  LD D +V  SL  MYARC  LDSAR  F  I   DLVSWNS
Sbjct: 266 AVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNS 325

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +++ YS  G   EA+ LF  MR+    PD IT+  +L +C     L  G+ +  ++VK  
Sbjct: 326 IVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLG 385

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D +  + ++L+ MY +C  L  A  VF  + ++DVVTWN+++TA AQ+    E + LF+
Sbjct: 386 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFS 445

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            +  +  + D+I+L  VLSA A +G  ++ K V  YA + GL  D             CG
Sbjct: 446 LLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCG 505

Query: 360 SIDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           S+DDA+++FE M    +V SW+++I   A  G A EA  LF RM   G   RPN VTFIG
Sbjct: 506 SLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLG--IRPNHVTFIG 563

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL+AC   G V+EG   + +M   +G++P  EH SC+VDL ARAG L+EA +F+++MP +
Sbjct: 564 VLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFE 623

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D I+   LL A +   + ++ +R  + +L I+ S+S  YV+   I+A    W++ A+++
Sbjct: 624 PDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLK 683

Query: 539 ALMREKGVSKTPGCSWI 555
             MR  GV K+PG SW+
Sbjct: 684 KAMRTSGVKKSPGKSWV 700



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+  M R G   D F       +C  L  +  G  VH+   K     D  V ++L+T
Sbjct: 136 ALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVT 195

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEI 221
           MY++ G +D    +F+ I+++DL+SW S+I+G+++ G+  EA+++F  M  E    P+E 
Sbjct: 196 MYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEF 255

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
              S   +CG +G    G+ + G  +K ++D + Y+G +L DMY +C  L  AR  F  +
Sbjct: 256 HFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRI 315

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
              D+V+WN+++ AY+  GL +EA++LF+ M+ +G+ PD IT+ G+L AC    AL  G+
Sbjct: 316 EAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGR 375

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y  + GL  D+            C  +  A+ VF ++   + V+WN++++A A + 
Sbjct: 376 LIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHN 435

Query: 391 RAHEALLLFERMSKEGGAARP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
              E L LF  ++K    + P  + ++   VLSA    G  +  +++      + GL+  
Sbjct: 436 HPEEVLKLFSLLNK----SEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKA-GLVDD 490

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
               + ++D YA+ G L +A    E M    D
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRD 522



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 204/411 (49%), Gaps = 23/411 (5%)

Query: 122 YPFVFISCANLLALNHGVSVH-------SSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           Y  +  +C+ L +L  G  VH       SS     L  +  + + LITMY RC   DSAR
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           +VFDE+  R+ VSW S+I+ + + G A +A+ LF  M       D+  L S + +C +LG
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D+  G+ V    +K++   +  + +AL+ MY K G +     +F+ + +KD+++W ++I 
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 295 AYAQNGLSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            +AQ G   EA+ +F  M   G  +P++        AC ++G+ + G+ +   + +  L 
Sbjct: 227 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D++           C ++D A   F  +   + VSWN++++A +  G   EAL+LF  M
Sbjct: 287 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G   RP+ +T  G+L ACV    +  GR +   +    GL       + ++ +YAR 
Sbjct: 347 RDSG--LRPDGITVRGLLCACVGRDALYHGRLIHSYL-VKLGLDGDVSVCNSLLSMYARC 403

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
             LS A D    + ++ D +   ++L AC +  + +   ++  LL + E S
Sbjct: 404 SDLSSAMDVFHEIKDQ-DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPS 453


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 274/478 (57%), Gaps = 27/478 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLI 161
           +L+   +M   G++PD FT   V  +C++L  L  G  +H+   K G LDE+  V  +L+
Sbjct: 199 ALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 258

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDE 220
            MY  C ++ S R+VFD + +R +  WN+MI+GYS+  + KEA+ LF  M E    L + 
Sbjct: 259 DMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 318

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T+  V+ +C   G     + + GFVVK  +D + ++ + L+DMY + G +  A R+F  
Sbjct: 319 TTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 378

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-----------YAGVNPDKITLIGVLS 329
           M ++D+VTWN MIT Y  +    +A++L ++M+              + P+ ITL+ +L 
Sbjct: 379 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 438

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           +CA++ AL  GK +  YA +  L  D+            CG +  + KVF+ +P  N ++
Sbjct: 439 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 498

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WN +I A   +G   EA+ L   M  +G   +PN+VTFI V +AC H+G+VDEG R+F +
Sbjct: 499 WNVIIMAYGMHGNGQEAIDLLRMMMVQG--VKPNEVTFISVFAACSHSGMVDEGLRIFYV 556

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNT 497
           M   +G+ P S+HY+C+VDL  RAG + EA+  +  MP   ++     +LLGA +   N 
Sbjct: 557 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNL 616

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++ +   Q L+++E + + +YV+ + I+++  +WD + ++R  M+E+GV K PGCSWI
Sbjct: 617 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 674



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 236/468 (50%), Gaps = 33/468 (7%)

Query: 41  QQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           +QIH  +      ++ +   N L+       DF     +F +IS  N+ ++N +I  L +
Sbjct: 30  KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 89

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL---ALNHGVSVHSSVFKIGLDE 152
            ++K+  +L+ +  M    ++P +FT   V  +C+NL     L  G  VH+   + G + 
Sbjct: 90  -FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 147

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           +  + ++L+ MY + GKL S++ +      RDLV+WN+++S   +     EA+E    M 
Sbjct: 148 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 207

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGAL 271
            E   PDE T+ SVL +C  L  L  GK +  + +KN  +D N ++GSAL+DMY  C  +
Sbjct: 208 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 267

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSA 330
           +  RRVFD M ++ +  WNAMI  Y+QN    EA++LF  M + AG+  +  T+ GV+ A
Sbjct: 268 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 327

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSW 379
           C   GA    + +  +  +RGL  D F            G ID A+++F  M   + V+W
Sbjct: 328 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 387

Query: 380 NAMISALAFNGRAHEALLLFERMSK-----EGGAAR----PNDVTFIGVLSACVHAGLVD 430
           N MI+   F+    +ALLL  +M         GA+R    PN +T + +L +C     + 
Sbjct: 388 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 447

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +G+ +      +  L       S +VD+YA+ G L  +    +++P+K
Sbjct: 448 KGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 494



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 195/382 (51%), Gaps = 19/382 (4%)

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLD 171
           LG+KPDN+ +P +  + A+L  +  G  +H+ V+K G   D   V+++L+ +Y +CG   
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
           +  KVFD I ER+ VSWNS+IS        + A+E F  M +E   P   TLVSV+ +C 
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 123

Query: 232 DLG---DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           +L     L++GK V  + ++ K +LN ++ + L+ MYGK G L  ++ +  +   +D+VT
Sbjct: 124 NLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 182

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN ++++  QN    EA+     M   GV PD+ T+  VL AC+ +  L  GK +  YA 
Sbjct: 183 WNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL 242

Query: 349 QRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
           + G L  + F GS           +    +VF+ M       WNAMI+  + N    EAL
Sbjct: 243 KNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEAL 302

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
           LLF  M +  G    N  T  GV+ ACV +G       +   +    GL       + ++
Sbjct: 303 LLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLM 360

Query: 457 DLYARAGHLSEAWDFVERMPEK 478
           D+Y+R G +  A     +M ++
Sbjct: 361 DMYSRLGKIDIAMRIFGKMEDR 382



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 199/412 (48%), Gaps = 52/412 (12%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           +N MI G +   +    +L L+  M+   GL  ++ T   V  +C    A +   ++H  
Sbjct: 285 WNAMIAGYSQN-EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 343

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V K GLD D  V ++L+ MY+R GK+D A ++F ++ +RDLV+WN+MI+GY    + ++A
Sbjct: 344 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 403

Query: 205 VELFGRMREEE-----------FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           + L  +M+  E             P+ ITL+++L SC  L  L  GK +  + +KN +  
Sbjct: 404 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 463

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  +GSAL+DMY KCG L  +R+VFD +  K+V+TWN +I AY  +G   EAI L   M 
Sbjct: 464 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 523

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
             GV P+++T I V +AC+                          G +D+ L++F  M  
Sbjct: 524 VQGVKPNEVTFISVFAACS------------------------HSGMVDEGLRIFYVMKP 559

Query: 374 TNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
              V      +  ++  L   GR  EA  L   M        P D    G  S+ + A  
Sbjct: 560 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM--------PRDFNKAGAWSSLLGASR 611

Query: 429 VDEGRRLFDLMSSSF-GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +     + ++ + +   L P  + HY  + ++Y+ AG   +A +    M E+
Sbjct: 612 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 663


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 295/544 (54%), Gaps = 27/544 (4%)

Query: 31  LKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNE 83
           LK C   + +   ++IH Q L+      N +L  ++D+     +   A  +F+ I+  N 
Sbjct: 149 LKACTELQDLDNGKKIHCQ-LVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNV 207

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
             +  MI G           L L+ +M+   +  + +TY  + ++C  L AL+ G   H 
Sbjct: 208 VCWTSMIAGYVKN-DLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHG 266

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            + K G++    +  SL+ MY +CG + +AR+VF+E    DLV W +MI GY+  G   E
Sbjct: 267 CLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNE 326

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMGSALI 262
           A+ LF +M+  E  P+ +T+ SVL  CG + +L LG+ V G  +K  + D N  + +AL+
Sbjct: 327 ALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTN--VANALV 384

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KC     A+ VF+    KD+V WN++I+ ++QNG  +EA+ LF+RM    V P+ +
Sbjct: 385 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGV 444

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFE 369
           T+  + SACAS+G+L +G  +  Y+ + G              D +  CG    A  +F+
Sbjct: 445 TVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFD 504

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +   N ++W+AMI      G    +L LFE M K+    +PN+ TF  +LSAC H G+V
Sbjct: 505 TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKK--QQKPNESTFTSILSACGHTGMV 562

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           +EG++ F  M   +   P ++HY+CMVD+ ARAG L +A D +E+MP + D    GA L 
Sbjct: 563 NEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLH 622

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C      D+ + V++ +L++   ++  YV+ S ++A+   W+ + ++R LM+++G+SK 
Sbjct: 623 GCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKI 682

Query: 550 PGCS 553
            G S
Sbjct: 683 AGHS 686



 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 171/520 (32%), Positives = 266/520 (51%), Gaps = 26/520 (5%)

Query: 10  RHLAFTELNDPSLLREKLLS----LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           + L  TE ND S L     S    LL KC +  +++Q H  +  N +     +  +++ L
Sbjct: 26  KELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSL 85

Query: 66  KDF----NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
             F      A L+F QI  P+ Y + VM+R      ++    +KLY  + + G + D+  
Sbjct: 86  YGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN-KESVEVVKLYDLLMKHGFRYDDIV 144

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +     +C  L  L++G  +H  + K+    D+ V   L+ MYA+CG++ SA KVF++I 
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT 203

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            R++V W SMI+GY K    +E + LF RMRE   L +E T  +++ +C  L  L  GKW
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKW 263

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
             G +VK+ ++L+  + ++L+DMY KCG +  ARRVF+   + D+V W AMI  Y  NG 
Sbjct: 264 FHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGS 323

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL--------- 352
            NEA+ LF +MK   + P+ +T+  VLS C  I  L+LG+ V   + + G+         
Sbjct: 324 VNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANAL 383

Query: 353 -RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 C    DA  VFE     + V+WN++IS  + NG  HEAL LF RM+ E  +  P
Sbjct: 384 VHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE--SVTP 441

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAW 469
           N VT   + SAC   G +  G  L    S   G +  S  +  + ++D YA+ G    A 
Sbjct: 442 NGVTVASLFSACASLGSLAVGSSL-HAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSAR 500

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
              + + EK + I   A++G   KQ +T  S  + + +L+
Sbjct: 501 LIFDTIEEK-NTITWSAMIGGYGKQGDTIGSLELFEEMLK 539


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 258/462 (55%), Gaps = 15/462 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCG 168
           ++R  L PD   Y  +   C  L  +  G  VH+ +     LD    + + ++ MYA+CG
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            LD AR++FDE+  +D+V+W ++I+G+S+    ++A+ LF +M    F P+  TL S+L 
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLK 197

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           + G    L  G  +  F +K     + Y+GSAL+DMY +CG +  A+  FD M  K  V+
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+I+ +A+ G    A+ L  +M+     P   T   VLSACASIGAL+ GKWV  +  
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMI 317

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + GL+   F            GSIDDA +VF+ +   + VSWN M++  A +G   E L 
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            FE+M + G    PN+++F+ VL+AC H+GL+DEG   F+LM   + + P   HY   VD
Sbjct: 378 RFEQMLRIG--IEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVD 434

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  R G L  A  F+  MP +    V GALLGAC+  KN ++     +   E++  +SG 
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGP 494

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++ S I+A+   W D AK+R +M+E GV K P CSW+ I++
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 21/376 (5%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISRP 81
           LLK+C     V+Q   +H  ++ +     + +L  II          + A  +F ++   
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +  +I G +    +   +L L+ QM RLG +P++FT   +  +  +   L+ G  +
Sbjct: 153 DMVTWTALIAGFSQN-NRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQL 211

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K G     +V  +L+ MYARCG +D+A+  FD +  +  VSWN++ISG+++ G  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEG 271

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           + A+ L  +M+ + F P   T  SVL +C  +G L  GKWV   ++K+ + L  ++G+ L
Sbjct: 272 EHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTL 331

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K G++  A+RVFD +V  DVV+WN M+T  AQ+GL  E +  F +M   G+ P++
Sbjct: 332 LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNE 391

Query: 322 ITLIGVLSACASIGALDLGKW----VDKYASQRGLRHDIF-------CGSIDDALKVFED 370
           I+ + VL+AC+  G LD G +    + KY  +  + H +         G +D A +   +
Sbjct: 392 ISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 371 MPVTNEVS-WNAMISA 385
           MP+    + W A++ A
Sbjct: 452 MPIEPTAAVWGALLGA 467


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 280/535 (52%), Gaps = 20/535 (3%)

Query: 41  QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H  ++     N +   N +L   +  K+FN    +F ++   N  ++N +I G+   
Sbjct: 93  KQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEG 152

Query: 97  WQKYSH-SLKLYY--QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
             K++   L  +Y  QM    + P+  T   +  +   L  +     +H  + K G D +
Sbjct: 153 NCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSN 212

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V  +L+  YA+ G +D A+  FDE+  RDLV WN M+S Y+  G   +A  +F  MR 
Sbjct: 213 CFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRL 272

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
           E    D  T  S++ SCG LG   LGK V G +++   DL+  + SAL+DMY K   +  
Sbjct: 273 EGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIED 332

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           AR+ FD M+ K++V+W  MI  Y Q+G   EA+ L   M      PD++ L  +LS+C +
Sbjct: 333 ARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGN 392

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           + A      V  Y  + G    +            CGSI  A + F  +   + +SW ++
Sbjct: 393 LSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSL 452

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           + A AF+G + E + +FE+M       RP+ V F+GVLSAC H G V EG   F+LM + 
Sbjct: 453 MGAYAFHGLSKEGVEVFEKMLFSN--VRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINV 510

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           + ++P SEHY+C++DL  RAG L EA + +  MP +     LGA LGAC+  +N  +++ 
Sbjct: 511 YQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRNVGLARW 570

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
             + L  +E +   NY + S ++A++  W D A++R LMRE+   K PGCSW+ I
Sbjct: 571 ASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMEI 625



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 188/387 (48%), Gaps = 41/387 (10%)

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A L  L+ G  +H+ V K+G      + + ++ +Y +C + +   K+FDE+  +++VSWN
Sbjct: 84  AKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWN 143

Query: 190 SMISGY----SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           ++I G      K    +     F +M  E   P+ ITL  +L +  +L D+ + + +  F
Sbjct: 144 TLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCF 203

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++K+  D N ++GSAL+D Y K G +  A+  FD + ++D+V WN M++ YA NG+  +A
Sbjct: 204 ILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKA 263

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS----- 360
             +F  M+  GV  D  T   ++++C  +G+  LGK V     +     D+   S     
Sbjct: 264 FGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDM 323

Query: 361 ------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
                 I+DA K F+ M V N VSW  MI     +G   EA+ L + M +      P+++
Sbjct: 324 YSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRV--YTYPDEL 381

Query: 415 TFIGVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
               +LS+C           VHA +V+ G   F  ++++            +V  Y++ G
Sbjct: 382 ALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANA------------LVSAYSKCG 429

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGA 490
            +  A+     + E  D I   +L+GA
Sbjct: 430 SIGSAFQSFSSVAEP-DIISWTSLMGA 455


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 281/497 (56%), Gaps = 18/497 (3%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLK-PDNFTYPFVFISCA 130
           +LF +I   +  ++  +I G   A Q +   +L+++ +M   G   P+ F +   F +C 
Sbjct: 191 MLFERIKDKDLISWGSIIAGF--AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACG 248

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            + +  +G  +H    K  LD D +V  SL  MYARC  LDSAR  F  I   DLVSWNS
Sbjct: 249 AVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNS 308

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +++ YS  G   EA+ LF  MR+    PD IT+  +L +C     L  G+ +  ++VK  
Sbjct: 309 IVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLG 368

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D +  + ++L+ MY +C  L  A  VF  + ++DVVTWN+++TA AQ+    E + LF+
Sbjct: 369 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFS 428

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            +  +  + D+I+L  VLSA A +G  ++ K V  YA + GL  D             CG
Sbjct: 429 LLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCG 488

Query: 360 SIDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           S+DDA+++FE M    +V SW+++I   A  G A EA  LF RM   G   RPN VTFIG
Sbjct: 489 SLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLG--IRPNHVTFIG 546

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL+AC   G V+EG   + +M   +G++P  EH SC+VDL ARAG L+EA +F+++MP +
Sbjct: 547 VLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFE 606

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D I+   LL A +   + ++ +R  + +L I+ S+S  YV+   I+A    W++ A+++
Sbjct: 607 PDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLK 666

Query: 539 ALMREKGVSKTPGCSWI 555
             MR  GV K+PG SW+
Sbjct: 667 KAMRTSGVKKSPGKSWV 683



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+  M R G   D F       +C  L  +  G  VH+   K     D  V ++L+T
Sbjct: 119 ALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVT 178

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEI 221
           MY++ G +D    +F+ I+++DL+SW S+I+G+++ G+  EA+++F  M  E    P+E 
Sbjct: 179 MYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEF 238

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
              S   +CG +G    G+ + G  +K ++D + Y+G +L DMY +C  L  AR  F  +
Sbjct: 239 HFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRI 298

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
              D+V+WN+++ AY+  GL +EA++LF+ M+ +G+ PD IT+ G+L AC    AL  G+
Sbjct: 299 EAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGR 358

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y  + GL  D+            C  +  A+ VF ++   + V+WN++++A A + 
Sbjct: 359 LIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHN 418

Query: 391 RAHEALLLFERMSKEGGAARP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
              E L LF  ++K    + P  + ++   VLSA    G  +  +++      + GL+  
Sbjct: 419 HPEEVLKLFSLLNK----SEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKA-GLVDD 473

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
               + ++D YA+ G L +A    E M    D
Sbjct: 474 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRD 505



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 192/411 (46%), Gaps = 40/411 (9%)

Query: 122 YPFVFISCANLLALNHGVSVH-------SSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           Y  +  +C+ L +L  G  VH       SS     L  +  + + LITMY R        
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGR-------- 98

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
                    + VSW S+I+ + + G A +A+ LF  M       D+  L S + +C +LG
Sbjct: 99  ---------NPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 149

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D+  G+ V    +K++   +  + +AL+ MY K G +     +F+ + +KD+++W ++I 
Sbjct: 150 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 209

Query: 295 AYAQNGLSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            +AQ G   EA+ +F  M   G  +P++        AC ++G+ + G+ +   + +  L 
Sbjct: 210 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 269

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D++           C ++D A   F  +   + VSWN++++A +  G   EAL+LF  M
Sbjct: 270 RDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 329

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G   RP+ +T  G+L ACV    +  GR +   +    GL       + ++ +YAR 
Sbjct: 330 RDSG--LRPDGITVRGLLCACVGRDALYHGRLIHSYL-VKLGLDGDVSVCNSLLSMYARC 386

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
             LS A D    + ++ D +   ++L AC +  + +   ++  LL + E S
Sbjct: 387 SDLSSAMDVFHEIKDQ-DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPS 436


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 275/488 (56%), Gaps = 18/488 (3%)

Query: 86   FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL-NHGVSVHSS 144
            +N M+         YS +L+L+  M++  + PD+FT   V ISC ++  L ++G SVH+ 
Sbjct: 840  WNAMVAAYVENDNGYS-ALELFGFMRQKSVLPDSFTLSNV-ISCCSMFGLYDYGKSVHAE 897

Query: 145  VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
            +FK  +     +  +L+T+Y++CG    A  VF  + E+D+V+W S+ISG  K G  KEA
Sbjct: 898  LFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEA 957

Query: 205  VELFGRMREEE--FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            +++FG M++++    PD   + SV+ +C  L  L  G  V G ++K    LN ++GS+LI
Sbjct: 958  LKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLI 1017

Query: 263  DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            D+Y KCG    A +VF +M  +++V WN+MI+ Y++N L   +I LFN M   G+ PD +
Sbjct: 1018 DLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSV 1077

Query: 323  TLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDM 371
            ++  VL A +S  +L  GK +  Y  + G+  D           + CG    A  +F+ M
Sbjct: 1078 SITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM 1137

Query: 372  PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
               + ++WN MI     +G    AL LF+ + K G    P+DVTF+ ++SAC H+G V+E
Sbjct: 1138 QHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGET--PDDVTFLSLISACNHSGFVEE 1195

Query: 432  GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            G+  F++M   +G+ PK EHY+ MVDL  RAG L EA+ F++ MP + D  +   LL A 
Sbjct: 1196 GKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSAS 1255

Query: 492  QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
            +   N ++     + LL +E      YV    ++    + +++AK+   M+E+G+ K PG
Sbjct: 1256 RTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPG 1315

Query: 552  CSWIGIDD 559
            CSWI + D
Sbjct: 1316 CSWIEVSD 1323



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 223/458 (48%), Gaps = 26/458 (5%)

Query: 41   QQIHTQMLINFIQKPNFLLIRIIDLKDFNY-----ASLLFHQIS-RPNEYAFNVMIRGLT 94
            +QIH  ML N +   +FL   +ID+  F +     A  +F +I  + N   +NVMI G  
Sbjct: 689  KQIHGYMLRNSLDGDSFLKTALIDMY-FKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFG 747

Query: 95   TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
             + +    SL+LY   K   +K  + ++     +C+       G  +H  V K+GLD D 
Sbjct: 748  GS-EICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDP 806

Query: 155  HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
            +VS SL++MY++CG +  A  VF  + ++ L  WN+M++ Y +      A+ELFG MR++
Sbjct: 807  YVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQK 866

Query: 215  EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
              LPD  TL +V+  C   G    GK V   + K  +     + SAL+ +Y KCG    A
Sbjct: 867  SVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDA 926

Query: 275  RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK--YAGVNPDKITLIGVLSACA 332
              VF +M  KD+V W ++I+   +NG   EA+ +F  MK     + PD   +  V++ACA
Sbjct: 927  YLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACA 986

Query: 333  SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
             + AL  G  V     + G   ++F           CG  + ALKVF  M   N V+WN+
Sbjct: 987  GLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNS 1046

Query: 382  MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
            MIS  + N     ++ LF  M  +G    P+ V+   VL A      + +G+ L    + 
Sbjct: 1047 MISCYSRNNLPELSIELFNLMLSQG--IFPDSVSITSVLVAISSTASLLKGKSLHG-YTL 1103

Query: 442  SFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEK 478
              G IP   H  + ++D+Y + G    A +  ++M  K
Sbjct: 1104 RLG-IPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHK 1140



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFIS 128
            A L+F  +   +  A+  +I GL     K+  +LK++  MK     LKPD+     V  +
Sbjct: 926  AYLVFKSMEEKDMVAWGSLISGLCKN-GKFKEALKVFGDMKDDDDSLKPDSDIMTSVINA 984

Query: 129  CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            CA L AL+ G+ VH S+ K G   +  V  SLI +Y++CG  + A KVF  +R  ++V+W
Sbjct: 985  CAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAW 1044

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            NSMIS YS+    + ++ELF  M  +   PD +++ SVL +      L+ GK + G+ ++
Sbjct: 1045 NSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 1104

Query: 249  NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              +  + ++ +ALIDMY KCG    A  +F  M +K ++TWN MI  Y  +G    A+ L
Sbjct: 1105 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSL 1164

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF- 357
            F+ +K AG  PD +T + ++SAC   G ++ GK         Y  +  + H     D+  
Sbjct: 1165 FDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLG 1224

Query: 358  -CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFE---RMSKEGGAARPN 412
              G +++A    + MP   + S W  ++SA   +      +L  E   RM  E G+    
Sbjct: 1225 RAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGS---- 1280

Query: 413  DVTFIGVLSACVHAGLVDEGRRLFDLM 439
              T++ +++  + AGL +E  +L   M
Sbjct: 1281 --TYVQLINLYMEAGLKNEAAKLLGEM 1305



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/436 (30%), Positives = 208/436 (47%), Gaps = 34/436 (7%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP---DNFTYPFVFISCANLLALNHGVSV 141
           + N  IR L    + Y  +L LY   K  G  P     FT+P +  +C++L  L+ G ++
Sbjct: 527 SVNSGIRALIQKGE-YLQALHLY--TKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTI 583

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-----EIRERDLVSWNSMISGYS 196
           H S+  +G   D  ++ SL+ MY +CG LD A +VFD      +  RD+   NSMI GY 
Sbjct: 584 HGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYF 643

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITL---VSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           K    KE V  F RM      PD  +L   VSVL   G+      GK + G++++N +D 
Sbjct: 644 KFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRRED-GKQIHGYMLRNSLDG 702

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           + ++ +ALIDMY K G    A RVF  + +K +VV WN MI  +  + +   ++ L+   
Sbjct: 703 DSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLA 762

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           K   V     +  G L AC+       G+ +     + GL +D +           CG +
Sbjct: 763 KSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMV 822

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            +A  VF  +       WNAM++A   N   + AL LF  M ++  +  P+  T   V+S
Sbjct: 823 GEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQK--SVLPDSFTLSNVIS 880

Query: 422 ACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
            C   GL D G+ +  +L        P  E  S ++ LY++ G  ++A+   + M EK D
Sbjct: 881 CCSMFGLYDYGKSVHAELFKRPIQSTPAIE--SALLTLYSKCGCDTDAYLVFKSMEEK-D 937

Query: 481 EIVLGALL-GACQKQK 495
            +  G+L+ G C+  K
Sbjct: 938 MVAWGSLISGLCKNGK 953


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 285/567 (50%), Gaps = 82/567 (14%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN---FIQKPNFLLIRIID------LKDFNYASLLFHQ 77
           LLS L++  S K V+Q  TQ LI        P F++ +II       L    YA  +F  
Sbjct: 115 LLSKLQQLSSVKEVEQ--TQCLITKSGLFNHP-FVISKIISFLSLSPLGSLVYAQAIFED 171

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            +  N +  N MIR    A+ K    +K   LY  M R  +K D+FTYPF   +CA +L 
Sbjct: 172 TAMDNPFVCNTMIR----AYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLW 227

Query: 135 LNHG-------------VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
            N G               +H  +F++GLD+D  + +SL+ +Y++CG LD AR VFDE+ 
Sbjct: 228 CNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMT 287

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           E+ + SWN MIS Y ++     A  L G M      P                       
Sbjct: 288 EKTITSWNVMISAYDQINDFDSADSLIGSM------PG---------------------- 319

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
                 KN +  N      LI  Y + G +  A+ VF  M  +D V+WN+MI  Y Q   
Sbjct: 320 ------KNVVSWNM-----LIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKD 368

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
              A+ LF  M+ A V    ITLI VL ACA  GAL++G+ +     QR  + + +    
Sbjct: 369 YARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNA 428

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG ++ A +VF ++ + +   WNAMI +LA +G   EAL LF  M      AR
Sbjct: 429 LVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGAR 488

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTFIGVL AC H GLVDEGR  F+ M + + ++P  +HY CMVDL +R G L EA  
Sbjct: 489 PNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHH 548

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            ++ MP + + ++   LLGAC+   + D+++   Q L ++E    G+YV+ S I+A  + 
Sbjct: 549 MIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQR 608

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGI 557
           W+D  ++R+ M   GV K PG S IGI
Sbjct: 609 WNDVERVRSEMIGSGVPKKPGSSHIGI 635


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 259/467 (55%), Gaps = 32/467 (6%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR--CGKLDSA----- 173
           + P    SCA L     G S+H+   + G   D   +++L+ +Y +  C  LDS      
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 174 ------------RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
                       RKVFDE+ ERD+VSWN+++ G ++ G   EA+    +M  E F PD  
Sbjct: 112 DVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSF 171

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           TL +VL    +  D+  G  V GF  +N  D + ++GS+LIDMY  C     + +VFD +
Sbjct: 172 TLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNL 231

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             +D + WN+++   AQNG   EA+ +F RM  AGV P  +T   ++  C ++ +L  GK
Sbjct: 232 PVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGK 291

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y    G   ++F           CG I  A  +F+ M   + VSW AMI   A +G
Sbjct: 292 QLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHG 351

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            A EAL+LFERM  E G A+PN +TF+ VL+AC HAGLVD+G + F  MS+ +G++P  E
Sbjct: 352 PAREALVLFERM--ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLE 409

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           H++ + D   RAG L EA++F+ +M  K    V   LL AC+  KNT +++ V + ++E+
Sbjct: 410 HFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMEL 469

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           E  + G++V+ S +++    W+++A +R  MR+KG+ K P CSWI +
Sbjct: 470 EPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEV 516



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 18/367 (4%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F     +F ++   +  ++N ++ G      ++  +L    +M R G +PD+FT   V  
Sbjct: 120 FESVRKVFDEMIERDVVSWNTLVLGCAEE-GRHHEALGFVRKMCREGFRPDSFTLSTVLP 178

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
             A    +  G+ VH   F+ G D D  V  SLI MYA C + D + KVFD +  RD + 
Sbjct: 179 IFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHIL 238

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNS+++G ++ G  +EA+ +F RM +    P  +T  S++  CG+L  L  GK +  +V+
Sbjct: 239 WNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 298

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
               + N ++ S+LIDMY KCG +  A  +FD M + DVV+W AMI  YA +G + EA++
Sbjct: 299 CGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALV 358

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRG----LRH-----DIF 357
           LF RM+     P+ IT + VL+AC+  G +D G K+    ++  G    L H     D  
Sbjct: 359 LFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTL 418

Query: 358 --CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              G +D+A      M +    S W+ ++ A     R H+  +L E ++K+     P  +
Sbjct: 419 GRAGELDEAYNFISKMQIKPTASVWSTLLRAC----RVHKNTMLAEEVAKKIMELEPRSI 474

Query: 415 TFIGVLS 421
               VLS
Sbjct: 475 GSHVVLS 481



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 145/320 (45%), Gaps = 35/320 (10%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI--TLVSVLGSCGDLGDLVLGKWVEGF 245
           W   I   +  G+  +AV LF RMR        +  +L + L SC  LG   LG  +   
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 246 VVKN---------KMDLNFY----------MGSALIDMYGKCGALVPARRVFDAMVNKDV 286
            +++            LN Y           G A++D+ G   A    R+VFD M+ +DV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           V+WN ++   A+ G  +EA+    +M   G  PD  TL  VL   A    +  G  V  +
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 347 ASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
           A + G   D+F GS            D ++KVF+++PV + + WN++++  A NG   EA
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           L +F RM + G   RP  VTF  ++  C +   +  G++L   +    G        S +
Sbjct: 256 LGIFRRMLQAG--VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICG-GFEDNVFISSSL 312

Query: 456 VDLYARAGHLSEAWDFVERM 475
           +D+Y + G +S A    ++M
Sbjct: 313 IDMYCKCGEISIAHCIFDKM 332


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 280/503 (55%), Gaps = 22/503 (4%)

Query: 81  PNEYAFNVMIRGLTTAWQK----YSHS------LKLYYQMKRLGLKPDNFTYPFVFISCA 130
           P    F  M +    AW      YS +      L LYY+M   G+KPD+ T+     +C+
Sbjct: 36  PARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACS 95

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L+ L+ G  + +     G   D  V  S++ +YA+ GK+D A+ VFD++ +RD+VSW +
Sbjct: 96  SLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTT 155

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+G+++ G   +A++++  M++E    D + +V ++ +C  LGD   G  V G +V+ +
Sbjct: 156 MITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRRE 215

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           M+++  + ++LIDMY K G L  A RVF+ +  K V++W A+I+ +AQNG +N+ +    
Sbjct: 216 MNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLV 275

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGK----------WVDKYASQRGLRHDIFCGS 360
            M+ +G  PD ++LI  LSACA +G L +GK          ++DK +    +     CG+
Sbjct: 276 EMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGA 335

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +  A  +F+ +   + + WNAMIS+   +G   EAL LF +M +      P+  TF  +L
Sbjct: 336 LTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETN--ITPDHATFASLL 393

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC H+GLV+EG+  F ++     + P  +HY+CMVDL +RAG + EA+  +E M  K  
Sbjct: 394 SACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPG 453

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             +  ALL  C   KN  + + V + +LE    + G YV+ S  F+  K WDD+A  R +
Sbjct: 454 LAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKI 513

Query: 541 MREKGVSKTPGCSWIGIDDPKQS 563
           M+  G+ K PG S + ++   Q+
Sbjct: 514 MKNTGMRKVPGYSAVEVNGDLQA 536



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 202/357 (56%), Gaps = 19/357 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A ++F ++ + +  ++  MI G   + +    ++ +Y  M++   + D      +  +C 
Sbjct: 138 AKIVFDKMVKRDVVSWTTMITGFAQSGRPLD-AIDIYRTMQKERTEGDGVVMVGLIQACT 196

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L     G+SVH  + +  ++ D+ +  SLI MYA+ GKL+ A +VF+ I  + ++SW +
Sbjct: 197 SLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGA 256

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISG+++ G+A + +     M+   F PD ++L+S L +C  +G+L +GK + G +VK +
Sbjct: 257 LISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVK-R 315

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+   G+ALIDMY KCGAL  AR +FD +  +D++ WNAMI++Y  +G   EA+ LF 
Sbjct: 316 LYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFL 375

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKW-----VDKYASQRGLRH-----DIF--C 358
           +MK   + PD  T   +LSAC+  G ++ G++     +DK   Q   +H     D+    
Sbjct: 376 KMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRA 435

Query: 359 GSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
           G +++A ++ E M +   ++ W A++S        H+ LL+ E ++K+   + P+D+
Sbjct: 436 GQVEEAYQLIESMHIKPGLAIWVALLSGCL----NHKNLLIGEMVAKKILESNPDDL 488



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 183/362 (50%), Gaps = 17/362 (4%)

Query: 141 VHSSVFKIGLDEDDHVS-HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +H+ +   GL  +D  S   LI  Y R   +  AR VF+++ +R + +WNSMI  YS+  
Sbjct: 4   IHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTN 63

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           Y  E + L+ RM  E   PD  T    L +C  L DL +G+ +    V      + ++ S
Sbjct: 64  YPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVS 123

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +++++Y K G +  A+ VFD MV +DVV+W  MIT +AQ+G   +AI ++  M+      
Sbjct: 124 SVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEG 183

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVF 368
           D + ++G++ AC S+G    G  V  +  +R +  D              G ++ A +VF
Sbjct: 184 DGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVF 243

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           E +P  + +SW A+IS  A NG A++ L     M   G   +P+ V+ I  LSAC   G 
Sbjct: 244 EGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSG--FKPDLVSLISSLSACAQVGN 301

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           +  G+ L   +     L   S   + ++D+YA+ G L+ A    +++ E  D I+  A++
Sbjct: 302 LKVGKSLHGHIVKRLYLDKVSG--TALIDMYAKCGALTFARALFDQI-EPRDLILWNAMI 358

Query: 489 GA 490
            +
Sbjct: 359 SS 360


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 264/493 (53%), Gaps = 22/493 (4%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N +A+N +I G           L  Y +M++ G+ PD +T+P +      ++ +     +
Sbjct: 24  NVFAYNALISGFVLNGLP-QDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKI 82

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V K+GLD D +V  SL++ Y +   +  AR++FDEI +RD+V WNSM++GY+++G  
Sbjct: 83  HGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRF 142

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA+ +   M +E  L  + T+  VL      GD   G+ V GF++K   D    + +AL
Sbjct: 143 DEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNAL 202

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMYGKC  +V A  +F+ M  KD+ +WN++++A       +  + LF+RM   GV  D 
Sbjct: 203 IDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDL 262

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-------------------IFCGSID 362
           +T+  +L AC+ + AL  G+ +  Y    G   D                     CGS+ 
Sbjct: 263 VTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMR 322

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA  VF +M   +  SWN MI     +G  +EAL +F  M K G   +PN++TF+GVL A
Sbjct: 323 DAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSG--LKPNEITFVGVLLA 380

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAG + +G +    M    G++P  +HY+C++D+  RAG L EA+     MP + + +
Sbjct: 381 CSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPV 440

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V  ALL ACQ   N D+++   Q + E+  ++ GNYV+ S  +     + +   +R  MR
Sbjct: 441 VWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMR 500

Query: 543 EKGVSKTPGCSWI 555
           ++ V KTPGCSWI
Sbjct: 501 QQDVKKTPGCSWI 513



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 166/327 (50%), Gaps = 24/327 (7%)

Query: 163 MYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           MYA+C +++ A  V +   +  R++ ++N++ISG+   G  ++ +  +  MR+   LPD+
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T   ++    ++ ++   K + G V K  +DL+ Y+GS+L+  Y K   +  AR +FD 
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           + ++DVV WN+M+  YAQ G  +EA+ +   M   GV   K T+ GVLS  A  G  D G
Sbjct: 121 IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNG 180

Query: 341 KWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           + V  +  + G            D++  C  + DAL++FE M   +  SWN+++SA    
Sbjct: 181 RLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELC 240

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
                 L LF+RM  +G   + + VT   +L AC H   +  GR +   M  + G +   
Sbjct: 241 SDHDGTLRLFDRMLGDG--VQLDLVTITTILPACSHLAALVHGREIHGYMIVN-GFVKDG 297

Query: 450 EH--------YSCMVDLYARAGHLSEA 468
           E          + ++D+YA+ G + +A
Sbjct: 298 ESENMYNLQTINALMDMYAKCGSMRDA 324


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 289/533 (54%), Gaps = 19/533 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H  ++        FL   ++++     + ++A  LF  + + N  ++  MI GL+  
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
             K+S +++ +  M+  G  P  F +     +CA+L ++  G  +H    K G+  +  V
Sbjct: 85  -SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             +L  MY++CG +  A KVF+E+  +D VSW +MI GYSK+G  +EA+  F +M +EE 
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D+  L S LG+CG L     G+ V   VVK   + + ++G+AL DMY K G +  A  
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 277 VFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           VF      ++VV++  +I  Y +     + + +F  ++  G+ P++ T   ++ ACA+  
Sbjct: 264 VFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQA 323

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           AL+ G  +     +     D F           CG ++ A++ F+++    E++WN+++S
Sbjct: 324 ALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVS 383

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               +G   +A+ +FERM   G   +PN +TFI +L+ C HAGLV+EG   F  M  ++G
Sbjct: 384 VFGQHGLGKDAIKIFERMVDRG--VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYG 441

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           ++P  EHYSC++DL  RAG L EA +F+ RMP + +     + LGAC+   + ++ +   
Sbjct: 442 VVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAA 501

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + L+++E  NSG  V+ S I+AN + W+D   +R  MR+  V K PG SW+ +
Sbjct: 502 EKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 17/347 (4%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G  +H+ +   G      +++ L+ MY++CG+LD A K+FD + +R+LVSW +MISG
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            S+     EA+  F  MR    +P +    S + +C  LG + +GK +    +K  +   
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE 140

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++GS L DMY KCGA+  A +VF+ M  KD V+W AMI  Y++ G   EA++ F +M  
Sbjct: 141 LFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMID 200

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDD 363
             V  D+  L   L AC ++ A   G+ V     + G   DIF G+           ++ 
Sbjct: 201 EEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMES 260

Query: 364 ALKVFE-DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           A  VF  D    N VS+  +I       +  + L +F  + ++G    PN+ TF  ++ A
Sbjct: 261 ASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG--IEPNEFTFSSLIKA 318

Query: 423 CVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           C +   +++G +L   +M  +F   P     S +VD+Y + G L +A
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQA 363


>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
 gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
          Length = 673

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/480 (36%), Positives = 270/480 (56%), Gaps = 16/480 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D   A   F +I   N  ++N MI  L      ++ +L++Y +M+  G+KP + +Y    
Sbjct: 63  DLEGAREAFDRIPAKNVVSWNSMIAALNEHGH-FARALEIYRRMEPEGVKPSDISYIHAL 121

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SC+ L  L  G S+H  V   G D    V ++L+ MY++C +LD AR+ F+ I  +D+V
Sbjct: 122 CSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVV 181

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           SWNSMI+ +S++G + EA+E + RM  EE L P +ITLV  LG+   L      K ++  
Sbjct: 182 SWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQED 241

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            ++  ++ +  +GSAL+   GKCG L  AR VFD M  ++VV+W+ +I A A++G   +A
Sbjct: 242 AIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRDA 301

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           I LF+RM   G+ P+++TL+ VL ACAS GA+  G+      S  G   +          
Sbjct: 302 IELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNM 361

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG +  A  VF+ M   N VSW AM++  A +G   EA  +F+ M+ EG   +PN +
Sbjct: 362 YGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEG--IQPNVI 419

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ VL  C HAG+V +G   F +M   FG++P +EHY C++DL  RAG L EA + +  
Sbjct: 420 TFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRT 479

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDD 533
           MP + D+    +LLGAC+   +TD ++R+ +L  ++     S  YV+ S ++ + +   D
Sbjct: 480 MPVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFASAPYVLLSNMYTDEEQQSD 539



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 222/413 (53%), Gaps = 19/413 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI---GLDEDDHVSHSLITMYAR 166
           M+  G +P+   +  +  +CA     +    +    F++   G D D  V+ +LI+  AR
Sbjct: 1   MELDGCRPNAVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALAR 60

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
           CG L+ AR+ FD I  +++VSWNSMI+  ++ G+   A+E++ RM  E   P +I+ +  
Sbjct: 61  CGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHA 120

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L SC  L DL  GK +   V  +  D   ++G+AL++MY KC  L  AR  F+ + +KDV
Sbjct: 121 LCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDV 180

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           V+WN+MI A++Q G S+EA+  + RM     + P KITL+  L A  S+ +    K + +
Sbjct: 181 VSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQE 240

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
            A + GL  D+            CG +D A  VF+ M   N VSW+ +I+ALA +GR  +
Sbjct: 241 DAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRD 300

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A+ LF RM  +G   +PN+VT + VL AC   G + EGRR    +S   G   ++   + 
Sbjct: 301 AIELFHRMDLDG--IQPNEVTLLSVLEACASTGAIAEGRRTHARVSGC-GFEAETNVANA 357

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           +V++Y + GHL  A    + M  + + +   A+L       +T+ ++RV + +
Sbjct: 358 LVNMYGKCGHLGSARTVFDAMTWR-NVVSWTAMLAGYAHHGHTEEARRVFKAM 409


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 311/611 (50%), Gaps = 89/611 (14%)

Query: 27  LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L  +LK C   PS +     H  +  N  +   F+   ++ +         AS++F +I+
Sbjct: 120 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 179

Query: 80  R---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQM------KRLGLKPDNFTYPFVFISCA 130
           +    +  ++N ++     +   ++ +L L+ +M      K    + D  +   +  +C 
Sbjct: 180 QRGIDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L A+     VH +  + G   D  V ++LI  YA+CG +++A KVF+ +  +D+VSWN+
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 298

Query: 191 MISGYSKMGYAKEAVELFGRMREEEF---------------------------------- 216
           M++GYS+ G  K A ELF  MR+E                                    
Sbjct: 299 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 358

Query: 217 -LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM----------DLNFYMGSALIDMY 265
            LP+ +T++SVL +C  LG    G  +  + +KN +          D +  + +ALIDMY
Sbjct: 359 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 418

Query: 266 GKCGALVPARRVFD--AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDK 321
            KC +   AR +FD   +  ++VVTW  MI  +AQ G SN+A+ LF  M  +  GV P+ 
Sbjct: 419 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 478

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------------CGSIDDA 364
            T+  +L ACA + A+ +GK +  Y     LRH  +                 CG +D A
Sbjct: 479 YTISCILMACAHLAAIRIGKQIHAYV----LRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF+ M   + +SW +M++    +GR  EAL +F++M K G    P+D+TF+ VL AC 
Sbjct: 535 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV--PDDITFLVVLYACS 592

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H G+VD+G   FD MS+ +GL P++EHY+  +DL AR G L +AW  V+ MP +   +V 
Sbjct: 593 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 652

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            ALL AC+   N ++++  +  L+E+ + N G+Y + S I+A    W D A++R LM++ 
Sbjct: 653 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 712

Query: 545 GVSKTPGCSWI 555
           G+ K PGCSW+
Sbjct: 713 GIKKRPGCSWV 723



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 234/484 (48%), Gaps = 81/484 (16%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           +YA L+  +++      +N++IR       +   ++ +  +M R G + D+FT P V  +
Sbjct: 68  DYALLVLERVTPSPAVWWNLLIREHIKQ-GRLDSAINVSCRMLRAGTRLDHFTLPHVLKA 126

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER---DL 185
           C  L +   G + H  +   G + +  + ++L+ MY+RCG L+ A  +FDEI +R   D+
Sbjct: 127 CGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDV 186

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLGDLVLG 239
           +SWNS++S + K   A  A++LF +M      +      D I++V++L +CG L  +   
Sbjct: 187 ISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQT 246

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM------- 292
           K V G  ++N   L+ ++G+ALID Y KCG +  A +VF+ M  KDVV+WNAM       
Sbjct: 247 KEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQS 306

Query: 293 ----------------------------ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
                                       I  Y+Q G S+EA+ +F +M ++G  P+ +T+
Sbjct: 307 GNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTI 366

Query: 325 IGVLSACASIGALDLGKWVDKYASQR----------GLRHDIF-----------CGSIDD 363
           I VLSACAS+GA   G  +  Y+ +           G   D+            C S   
Sbjct: 367 ISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKA 426

Query: 364 ALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           A  +F+D+P+   N V+W  MI   A  G +++AL LF  M  E     PN  T   +L 
Sbjct: 427 ARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILM 486

Query: 422 ACVHAGLVDEGRRLFDLM-------SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           AC H   +  G+++   +       SS++ +       +C++++Y++ G +  A    + 
Sbjct: 487 ACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVA------NCLINMYSKCGDVDTARHVFDS 540

Query: 475 MPEK 478
           M +K
Sbjct: 541 MSQK 544



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 186/433 (42%), Gaps = 68/433 (15%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           ++  Y  CG  D A  V + +     V WN +I  + K G    A+ +  RM       D
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLD 116

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             TL  VL +CG+L     G    G +  N  + N ++ +AL+ MY +CG+L  A  +FD
Sbjct: 117 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 176

Query: 280 AMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRM------KYAGVNPDKITLIGVLSA 330
            +  +   DV++WN++++A+ ++  +  A+ LF++M      K      D I+++ +L A
Sbjct: 177 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 236

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSW 379
           C S+ A+   K V   A + G   D+F           CG +++A+KVF  M   + VSW
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 296

Query: 380 NAMISALAFNGRAHEALLLFERMSKEG--------------------------------- 406
           NAM++  + +G    A  LF+ M KE                                  
Sbjct: 297 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF 356

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEG--------RRLFDLMSSSFGLIPKSEH---YSCM 455
             + PN VT I VLSAC   G   +G        +     + + FG   + E    Y+ +
Sbjct: 357 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG--GEDEDLMVYNAL 414

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALL--GACQKQKNTDVSQRVMQLLLEIESS 513
           +D+Y++      A    + +P +   +V   ++  G  Q   + D  +  ++++ E    
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 514 NSGNYVISSKIFA 526
               Y IS  + A
Sbjct: 475 APNAYTISCILMA 487



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 18/185 (9%)

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+ ++  Y  CGA   A  V + +     V WN +I  + + G  + AI +  RM  AG
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
              D  TL  VL AC  + +   G          G   ++F           CGS+++A 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 366 KVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMS----KEGGAARPNDVTFIG 418
            +F+++    + + +SWN+++SA   +  A  AL LF +M+    ++    R + ++ + 
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 232

Query: 419 VLSAC 423
           +L AC
Sbjct: 233 ILPAC 237


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/555 (32%), Positives = 297/555 (53%), Gaps = 20/555 (3%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQ---QIHTQMLINFIQK-PNFLLIRIID----LKDFNYA 71
           P L    L SL++   ST+  +     H Q++       P+F+   +++    L   N A
Sbjct: 2   PFLSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSA 61

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            LL       +   +  +I G +    +++ +L  +  M+R  ++P++FT+P  F +  +
Sbjct: 62  QLLLSLTPNRSVVTWTALIAG-SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L +   G  VH+   K G   D  V  S   MY++ G  + ARK+FDE+ ER++ +WN+ 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           +S     G   +A+  F   R E + P+ IT  + L +C     L LG+ + GFV+++  
Sbjct: 181 LSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGF 240

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           + +  + + LID YGKC  +  +  +F  +   + V+W +MI +Y QN    +A ++F R
Sbjct: 241 EADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLR 300

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
            +  G+ P    +  VLSACA +  L++GK V   A +  +  +IF           CGS
Sbjct: 301 ARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGS 360

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I+DA + F++MP  N V+WNAMI   A  G+A  A+ LF+ M+       PN VTF+ VL
Sbjct: 361 IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC  AG V+ G  +F+ M   +G+ P +EHY+C+VDL  RAG + +A+ F+++MP +  
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             V GALLGA +    +++ +     L E++  +SGN+V+ S +FA    W+++  +R  
Sbjct: 481 VSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKE 540

Query: 541 MREKGVSKTPGCSWI 555
           M++ G+ K  GCSWI
Sbjct: 541 MKDVGIKKGAGCSWI 555


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/504 (34%), Positives = 282/504 (55%), Gaps = 19/504 (3%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFV 125
            N A + F + +  N  ++N MI   +      + +  L  +M+  G  +K +  T   V
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGD-VNEAFNLLQEMQIQGEEMKANEVTILNV 357

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C + L L     +H   F+      + +S++ I  YA+CG L+SA KVF  I ++ +
Sbjct: 358 LPACLDKLQLRSLKELHGYSFRHCFQHVE-LSNAFILAYAKCGALNSAEKVFHGIGDKTV 416

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            SWN++I G+++ G  ++A+ L  +M      PD  T+ S+L +C  L  L  GK + G+
Sbjct: 417 SSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGY 476

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V++N ++ +F++G++L+  Y  CG    AR +FD M +K++V+WNAMI+ Y+QNGL  E+
Sbjct: 477 VLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYES 536

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS----- 360
           + LF +    G+   +I ++ V  AC+ + AL LGK    Y  +     D F G      
Sbjct: 537 LALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDM 596

Query: 361 ------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
                 I ++ KVF+ +   N  SWNA+I A   +G   EA+ L+ERM K G    P+  
Sbjct: 597 YAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVG--QMPDRF 654

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI-PKSEHYSCMVDLYARAGHLSEAWDFVE 473
           T+IG+L AC HAGLV+EG + F  M + F LI PK EHY+C++D+ ARAG L +A   V 
Sbjct: 655 TYIGILMACGHAGLVEEGLKYFKEMQN-FNLIEPKLEHYACLIDMLARAGRLDDALRLVN 713

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MPE+ D  +  +LL +C+     ++ ++V + LLE+E   + NYV+ S ++A L  WD 
Sbjct: 714 EMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDG 773

Query: 534 SAKMRALMREKGVSKTPGCSWIGI 557
             ++R +M+E G+ K  GCSWI +
Sbjct: 774 VRRVRQMMKEIGLQKDAGCSWIEV 797



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/470 (31%), Positives = 238/470 (50%), Gaps = 49/470 (10%)

Query: 27  LLSLLKKCPST---KTVQQIHT---QMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           +L++L  C      ++++++H    +     ++  N  ++        N A  +FH I  
Sbjct: 354 ILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGD 413

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
               ++N +I G          +L L +QM   G +PD FT   + ++CA+L +L +G  
Sbjct: 414 KTVSSWNALIGGHAQNGDP-RKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V + GL+ D  V  SL++ Y  CGK  SAR +FD +++++LVSWN+MISGYS+ G 
Sbjct: 473 IHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGL 532

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             E++ LF +   E     EI +VSV G+C  L  L LGK   G+V+K     + ++G +
Sbjct: 533 PYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCS 592

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           +IDMY K G +  +R+VFD + +K+V +WNA+I A+  +G   EAI L+ RMK  G  PD
Sbjct: 593 IIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPD 652

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-- 378
           + T IG+L AC   G                         +++ LK F++M   N +   
Sbjct: 653 RFTYIGILMACGHAGL------------------------VEEGLKYFKEMQNFNLIEPK 688

Query: 379 ---WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
              +  +I  LA  GR  +AL L   M +E      ++  +  +L +C   G ++ G ++
Sbjct: 689 LEHYACLIDMLARAGRLDDALRLVNEMPEE-----ADNRIWSSLLRSCRTFGALEIGEKV 743

Query: 436 FDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
              +     L P K+E+Y  + +LYA  G     WD V R+ + + EI L
Sbjct: 744 AKKL---LELEPDKAENYVLLSNLYAGLG----KWDGVRRVRQMMKEIGL 786



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 254/503 (50%), Gaps = 38/503 (7%)

Query: 2   LLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFL 58
           L+  +++S++ AF  L      +E +  LL+ C + K ++   ++H  +  +   + +++
Sbjct: 25  LILIQSHSQNAAFISLQ----AKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYV 80

Query: 59  L-IRIIDLKDFNYA--------SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQ 109
           L  R+I +    YA         L+F  +   N   +N ++ G T     Y   +K++  
Sbjct: 81  LNTRLIKM----YAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRN-GLYGDVVKVFMD 135

Query: 110 M-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           +      +PDNFT+P V  +C  +L +  G  +H  V K+GL  D  V ++L+ MY +CG
Sbjct: 136 LVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCG 195

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVL 227
            +D A KVFD + E +LVSWNSMI  +S+ G+++++ +L   M  EE  LPD +T+V++L
Sbjct: 196 AVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTIL 255

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
             C   G++ +G  + G  VK  +     + +A++ MY KCG L  A+  F    NK+VV
Sbjct: 256 PVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVV 315

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDK 345
           +WN MI+A++  G  NEA  L   M+  G  +  +++T++ VL AC     L   K +  
Sbjct: 316 SWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHG 375

Query: 346 YASQRGLRH----DIF------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
           Y+ +   +H    + F      CG+++ A KVF  +      SWNA+I   A NG   +A
Sbjct: 376 YSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKA 435

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           L L  +M+  G   +P+  T   +L AC H   +  G+ +   +  + GL       + +
Sbjct: 436 LHLLFQMTYSG--QQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRN-GLETDFFVGTSL 492

Query: 456 VDLYARAGHLSEAWDFVERMPEK 478
           +  Y   G  S A    +RM +K
Sbjct: 493 LSHYIHCGKASSARVLFDRMKDK 515


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 259/456 (56%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L P    Y  +  SC    A+  G  +H+ V   G   D  ++  L+ +Y  C  L SAR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            +FD I + ++  WN +I GY+  G  + AV+L+ +M +   +PD  T   VL +C  L 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            +  G+ +   VV+   + + ++G+ALIDMY KCG +  AR VFD ++ +D V WN+M+ 
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK------WVDKYAS 348
           AY+QNG  +  + L + M   G+ P + TL+  +SA A   AL  G+      W  ++ S
Sbjct: 251 AYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFES 310

Query: 349 QRGLRH---DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
              ++    D++  CGS+  A  +FE + V   VSWNAMI+  A +G A EAL LFE M+
Sbjct: 311 HDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN 370

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           +    A+P+ +TF+GVLSAC H GL++EG   F+ M   + + P  +HY+CMVDL   +G
Sbjct: 371 R---VAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSG 427

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA++ + +M    D  V GALL +C+   N ++ +  ++ L+E+E  ++GNYVI S 
Sbjct: 428 RLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSN 487

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A    W+  AK+R LM ++ + K+  CSWI + +
Sbjct: 488 IYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKN 523



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 282/549 (51%), Gaps = 66/549 (12%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL+ C + K ++   Q+H Q+ +        +  ++++L       + A LLF +I + 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 82  NEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           N + +NV+IRG   AW   Y  +++LYYQM   GL PDNFT+PFV  +CA L A+ HG  
Sbjct: 140 NIFLWNVLIRGY--AWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGRE 197

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V + G ++D  V  +LI MYA+CG + SAR+VFD+I  RD V WNSM++ YS+ G+
Sbjct: 198 IHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
               + L   M      P E TLV+ + +  D   L  G+ + G   + + + +  + +A
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTA 317

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+DMY KCG++  AR +F+ +  K VV+WNAMIT YA +G + EA+ LF  M      PD
Sbjct: 318 LVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPD 376

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            IT +GVLSAC+  G L+ G W+                  +  ++ ++  P      + 
Sbjct: 377 HITFVGVLSACSHGGLLEEG-WM----------------FFETMIRDYKIDPTVQH--YT 417

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGLVDEG----RRL 435
            M+  L  +GR  EA  L  +M        P+   +  +L++C +HA  V+ G     RL
Sbjct: 418 CMVDLLGHSGRLDEAYNLIMQMK-----VLPDSGVWGALLNSCKIHAN-VELGEIALERL 471

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
            +L     G      +Y  + ++YA+AG     W+ V ++ + + +  L   + AC    
Sbjct: 472 IELEPDDAG------NYVILSNIYAQAG----KWEGVAKLRKLMTDRRLKKSI-ACSW-- 518

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             +V  +V   L     S   ++ +S +I++ L+      ++  LM+E G S + G  + 
Sbjct: 519 -IEVKNKVHAFL-----SGDTSHPLSDEIYSELE------RVGGLMKEAGYSPSTGSVFH 566

Query: 556 GIDDPKQSN 564
            ++D +++N
Sbjct: 567 DVEDDEKAN 575


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 310/609 (50%), Gaps = 91/609 (14%)

Query: 31  LKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP-- 81
           LK C   PS ++    H  +  N  +   F+   ++ +         ASL+F +I+R   
Sbjct: 156 LKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGI 215

Query: 82  -NEYAFNVMIRGLTTAWQKYSHSLKLYYQM------KRLGLKPDNFTYPFVFISCANLLA 134
            +  ++N ++          + +L L+ +M      K    + D  +   +  +CA+L A
Sbjct: 216 DDVISWNSIVAAHVKGSNPRT-ALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKA 274

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L     +HS   + G   D  V ++LI  YA+CG +  A  VF+ +  +D+VSWN+M++G
Sbjct: 275 LPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334

Query: 195 YSKMGYAKEAVELFGRMREEEFL-----------------------------------PD 219
           Y++ G    A ELF  MR+E                                      P+
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM------------DLNFYMGSALIDMYGK 267
            +T++S+L +C  LG L  G     + +K  +              +  + +ALIDMY K
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454

Query: 268 CGALVPARRVFDAMVNKD--VVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDKIT 323
           C +   AR +F+++  ++  VVTW  MI  YAQ G SN+A+ LF+ M  K   V P+  T
Sbjct: 455 CRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYT 514

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRH---------------DIF--CGSIDDALK 366
           +  +L ACA + +L +GK +  Y +    RH               D++  CG +D A  
Sbjct: 515 ISCILMACAHLSSLRMGKQIHAYVT----RHHEYESSVYFVANCLIDMYSKCGDVDTARN 570

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF+ MP  NEVSW +M+S    +GR  EAL +F++M K G    P+D++F+ +L AC H+
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV--PDDISFLVLLYACSHS 628

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           G+VD+G   FD+M S +G+I  ++HY+C++DL AR+G L +AW  ++ MP +    +  A
Sbjct: 629 GMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVA 688

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+   N ++++  +  L+ +++ N G+Y + S I+A  + W D A++R LM++ G+
Sbjct: 689 LLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGI 748

Query: 547 SKTPGCSWI 555
            K PGCSW+
Sbjct: 749 KKRPGCSWV 757



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/547 (27%), Positives = 249/547 (45%), Gaps = 101/547 (18%)

Query: 29  SLLKKCPSTKTVQQIHTQMLI-NFIQKPNFLL-IRIIDLKDFNYAS-------------- 72
           SLLK+C S  TV+QIH +++    +  P  LL + +  L   +Y S              
Sbjct: 36  SLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLA 95

Query: 73  ---------LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
                    +L   +  P  + +N+++R       +   ++ +  +M R G KPD+FT P
Sbjct: 96  CGATSDALSVLERVVPSPAVW-WNLLVRAHIEE-GRLDRAIGVSCRMLRAGTKPDHFTLP 153

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           +   +C  L +   G + H  +   G + +  V ++L+ MY+R G L+ A  VFDEI  +
Sbjct: 154 YALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRK 213

Query: 184 ---DLVSWNSMISGYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLG 234
              D++SWNS+++ + K    + A++LF  M      +      D I++V++L +C  L 
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L   K +  + ++N    + ++ +ALID Y KCG++  A  VF+ M  KDVV+WNAM+T
Sbjct: 274 ALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVT 333

Query: 295 -----------------------------------AYAQNGLSNEAIMLFNRMKYAGVNP 319
                                               YAQ G   EA+  F +M   G  P
Sbjct: 334 GYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEP 393

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------------------DIF- 357
           + +T+I +LSACAS+GAL  G     Y+ ++ L                       D++ 
Sbjct: 394 NSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYS 453

Query: 358 -CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
            C S   A  +F  +P    N V+W  MI   A  G +++AL LF  M  +  A  PN  
Sbjct: 454 KCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAY 513

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY---SCMVDLYARAGHLSEAWDF 471
           T   +L AC H   +  G+++   ++       +S  Y   +C++D+Y++ G +  A + 
Sbjct: 514 TISCILMACAHLSSLRMGKQIHAYVTRHHEY--ESSVYFVANCLIDMYSKCGDVDTARNV 571

Query: 472 VERMPEK 478
            + MP++
Sbjct: 572 FDSMPKR 578


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 165/493 (33%), Positives = 271/493 (54%), Gaps = 37/493 (7%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           HSL  +  ++  G+ PD   +P +  +       N   S+H++V ++G   D + +++L+
Sbjct: 59  HSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALM 118

Query: 162 TMYARCG----------------------KLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            MY++                        K+DS RK+FD +  RD+VSWN++I+G ++ G
Sbjct: 119 NMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNG 178

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +EA+ +   M +E   PD  TL S+L    +  ++  GK + G+ +++  D + ++GS
Sbjct: 179 MYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGS 238

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +LIDMY KC  +  +   F  + N+D ++WN++I    QNG  ++ +  F RM    V P
Sbjct: 239 SLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKP 298

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
            +++   V+ ACA + AL+LGK +  Y  + G   + F           CG+I  A  +F
Sbjct: 299 MQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIF 358

Query: 369 EDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
             + + +   VSW A+I   A +G A +A+ LFE M  +G   +P  V F+ VL+AC HA
Sbjct: 359 NKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDG--VKPCYVAFMAVLTACSHA 416

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLVDEG + F+ M   FG+ P  EHY+ + DL  RAG L EA+DF+  M E+    V   
Sbjct: 417 GLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWST 476

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+  KN +++++V+  +L ++  N G +VI S I++  + W D+AK+R  MR+ G+
Sbjct: 477 LLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGL 536

Query: 547 SKTPGCSWIGIDD 559
            KTP CSWI + +
Sbjct: 537 KKTPACSWIEVGN 549



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 178/345 (51%), Gaps = 22/345 (6%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF ++   +  ++N +I G       Y  +L +  +M +  L+PD+FT   +        
Sbjct: 155 LFDRMPVRDVVSWNTVIAG-NAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA 213

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G  +H    + G D+D  +  SLI MYA+C +++ +   F  +  RD +SWNS+I+
Sbjct: 214 NVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G  + G   + +  F RM +E+  P +++  SV+ +C  L  L LGK +  ++++   D 
Sbjct: 274 GCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDD 333

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDA--MVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           N ++ S+L+DMY KCG +  AR +F+   M ++D+V+W A+I   A +G + +A+ LF  
Sbjct: 334 NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEE 393

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR------GLRH-----DIF--C 358
           M   GV P  +  + VL+AC+  G +D G W    + QR      GL H     D+    
Sbjct: 394 MLVDGVKPCYVAFMAVLTACSHAGLVDEG-WKYFNSMQRDFGVAPGLEHYAAVADLLGRA 452

Query: 359 GSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           G +++A     +M      S W+ +++A     RAH+ + L E++
Sbjct: 453 GRLEEAYDFISNMGEEPTGSVWSTLLAAC----RAHKNIELAEKV 493


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/564 (31%), Positives = 302/564 (53%), Gaps = 26/564 (4%)

Query: 16  ELNDPSLLREKLL--SLLKKCPSTKTVQQ---IHTQMLINF----IQKPNFLLIRIIDLK 66
           E+ +  ++ +K +  SL+  C   + +++   +H  ++I      I     LL       
Sbjct: 20  EMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCG 79

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
             + A  +F  +   + +A++ +I     A  +   ++ LY +M   G++P+  T+    
Sbjct: 80  SLDDAKRVFEGMEIKDLFAWSSIIAAYARAG-RGEMAVVLYRRMIAEGVEPNVVTFACAL 138

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             CA++  L  G ++H  +    + +DD +  SL+ MY +C ++  ARKVF+ ++ R++ 
Sbjct: 139 GGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVR 198

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           S+ +MIS Y + G   EA+ELF RM + E + P+  T  ++LG+   LG+L  G+ V   
Sbjct: 199 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 258

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           +     D N  + +AL+ MYGKCG+ V AR+VFD+M  ++V++W +MI AYAQ+G   EA
Sbjct: 259 LASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEA 318

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           + LF RM    V P  ++    L+ACA +GALD G+ +     +  L             
Sbjct: 319 LNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQMETSLLSMY 375

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CGS+DDA +VF  M   +  S NAMI+A   +GR  +AL ++ +M +EG  A  + +T
Sbjct: 376 ARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPA--DGIT 433

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+ VL AC H  LV + R     +    G++P  EHY CMVD+  R+G L +A + VE M
Sbjct: 434 FVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETM 493

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + D +    LL  C++  + D  +R  + + E+  + +  YV  S ++A  K +DD+ 
Sbjct: 494 PYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDAR 553

Query: 536 KMRALMREKGVSKTPGCSWIGIDD 559
           ++R  M E+GV++    S+I ID+
Sbjct: 554 RVRKEMEERGVTRPVAVSYIEIDN 577



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 20/401 (4%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
            +L+L+ +M+  G+  D F    +  +C  L AL  G  +H  +   G   D  +  +L+
Sbjct: 13  QALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALL 72

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MYA+CG LD A++VF+ +  +DL +W+S+I+ Y++ G  + AV L+ RM  E   P+ +
Sbjct: 73  QMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVV 132

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           T    LG C  +  L  G+ +   ++ +K+  +  +  +L++MY KC  +V AR+VF+ M
Sbjct: 133 TFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGM 192

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLG 340
             ++V ++ AMI+AY Q G   EA+ LF+RM K   + P+  T   +L A   +G L+ G
Sbjct: 193 KARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKG 252

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           + V ++ + RG   ++            CGS  +A KVF+ M   N +SW +MI+A A +
Sbjct: 253 RKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQH 312

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G   EAL LF+RM  E     P+ V+F   L+AC   G +DEGR +   +  +    P+ 
Sbjct: 313 GNPQEALNLFKRMDVE-----PSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQM 367

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           E  + ++ +YAR G L +A     RM  + D     A++ A
Sbjct: 368 E--TSLLSMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAA 405



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 148/299 (49%), Gaps = 13/299 (4%)

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+   + G   +A+EL+G M E   + D+  + S++ +C  L  L  G+ +   ++   
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              +  + +AL+ MY KCG+L  A+RVF+ M  KD+  W+++I AYA+ G    A++L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCG 359
           RM   GV P+ +T    L  CAS+  L  G+ + +      +  D           + C 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            + +A KVFE M   N  S+ AMISA    G   EAL LF RMSK   A  PN  TF  +
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKV-EAIEPNAYTFATI 239

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L A    G +++GR++   ++S  G        + +V +Y + G   EA    + M  +
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTAR 297


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/398 (39%), Positives = 245/398 (61%), Gaps = 13/398 (3%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR +F+ + E D+V +NSM  GYS+     E   LF  + E+  LPD  T  S+L +C  
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L  G+ +    +K  +D N Y+   LI+MY +C  +  AR VFD +V   VV +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           IT YA+    NEA+ LF  M+   + P++ITL+ VLS+CA +G+LDLGKW+ KYA +   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 353 RH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
                      D+F  CGS+DDA+ +FE M   +  +W+AMI A A +G+A +++L+FER
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M  E    +P+++TF+G+L+AC H G V+EGR+ F  M S FG++P  +HY  MVDL +R
Sbjct: 322 MRSEN--VQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSR 379

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG+L +A++F++++P     ++   LL AC    N D++++V + + E++ S+ G+YVI 
Sbjct: 380 AGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVIL 439

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++A  K W+    +R +M+++   K PGCS I +++
Sbjct: 440 SNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 37/423 (8%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
           A+ +++H     +N      +  + L+ KC S + + QI    + + I+  +F+  ++I+
Sbjct: 15  AETFTKHSKIDTVNT-----QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFV-AKLIN 68

Query: 65  L-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLG 114
                      +YA  LF  +S P+   FN M RG    + ++++ L+   L+ ++   G
Sbjct: 69  FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARG----YSRFTNPLEVFSLFVEILEDG 124

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           + PDN+T+P +  +CA   AL  G  +H    K+GLD++ +V  +LI MY  C  +DSAR
Sbjct: 125 ILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSAR 184

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            VFD I E  +V +N+MI+GY++     EA+ LF  M+ +   P+EITL+SVL SC  LG
Sbjct: 185 CVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLG 244

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L LGKW+  +  K+       + +ALIDM+ KCG+L  A  +F+ M  KD   W+AMI 
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQ 349
           AYA +G + +++++F RM+   V PD+IT +G+L+AC+  G ++ G+      V K+   
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364

Query: 350 RGLRH-----DIF--CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFER 401
             ++H     D+    G+++DA +  + +P++   + W  +++A +    +H  L L E+
Sbjct: 365 PSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACS----SHNNLDLAEK 420

Query: 402 MSK 404
           +S+
Sbjct: 421 VSE 423


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 297/539 (55%), Gaps = 44/539 (8%)

Query: 36  STKTVQQIHTQMLINF-IQKPNFLLIRIIDLKDFNYASLLFHQI--SRPNEYA--FNVMI 90
           S K  +QIH Q+ I F   +  ++L  ++++   N +    HQ+  S PN  A  +N MI
Sbjct: 277 SLKLGKQIH-QLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 335

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA-LNHGVSVHSSVFKIG 149
                A+  +  ++ L+ +M+  G+K D  T   +   C  L + L  G S+H+ V K G
Sbjct: 336 SAYA-AFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSG 394

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           +  D  + ++L++MY     ++S +K+FD ++  D++SWN+MI   ++     +A ELF 
Sbjct: 395 MRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFE 454

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
           RMRE E  P+  T++S+L +C D+  L  G+ + G+V+K+ +++N  + +AL DMY  CG
Sbjct: 455 RMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 514

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
               AR +F+   ++D+++WNAMI                         P+ +T+I VLS
Sbjct: 515 DEATARDLFEGCPDRDLISWNAMIXK---------------------AEPNSVTIINVLS 553

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDI-------------FCGSIDDALKVFEDMPVTNE 376
           +   +  L  G+ +  Y ++RG    +              CGS+  A  +F+ +P  N 
Sbjct: 554 SFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNI 613

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           +SWNAMI+    NGR  +A+L F +M ++G   RPN VTF+ VLSAC H+G ++ G +LF
Sbjct: 614 ISWNAMIAGYGMNGRGSDAMLAFSQMLEDG--FRPNGVTFVSVLSACSHSGFIEMGLQLF 671

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
             M   F + P+  HYSC+VDL AR G + EA +F++ MP + D  V  ALL +C+   +
Sbjct: 672 HSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSD 731

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
              ++ + + L ++E  N+GNYV+ S ++A   +W +  ++R  ++EKG+ K PG SWI
Sbjct: 732 AKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 790



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 219/422 (51%), Gaps = 20/422 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +S  +   +N M+ G    W  Y  ++ L  +M R  L+P++ T   + ++C 
Sbjct: 114 ARCVFDAMSDRDVVLWNAMVYGYV-GWGCYEEAMLLVREMGRENLRPNSRTMVALLLACE 172

Query: 131 NLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
               L  G  VH    + G+ D + HV+ +LI  Y R   +     +FD +  R++VSWN
Sbjct: 173 GASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWN 231

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MISGY  +G   +A+ELF +M  +E   D +T++  + +C +LG L LGK +    +K 
Sbjct: 232 AMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKF 291

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           +   + Y+ +AL++MY   G+L  + ++F+++ N+D   WN+MI+AYA  G   EA+ LF
Sbjct: 292 EFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLF 351

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGA-LDLGKWVDKYASQRGLRHDIFCGS-------- 360
            RM+  GV  D+ T++ +LS C  + + L  GK +  +  + G+R D   G+        
Sbjct: 352 IRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTE 411

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              ++   K+F+ M   + +SWN MI ALA N    +A  LFERM +     +PN  T I
Sbjct: 412 LNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRE--SEIKPNSYTII 469

Query: 418 GVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
            +L+AC     +D GR +   +M  S  +       + + D+Y   G  + A D  E  P
Sbjct: 470 SILAACEDVTCLDFGRSIHGYVMKHSIEI--NQPLRTALADMYMNCGDEATARDLFEGCP 527

Query: 477 EK 478
           ++
Sbjct: 528 DR 529



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 209/400 (52%), Gaps = 46/400 (11%)

Query: 60  IRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119
           I+I D K +N  S++ HQ +  N+ A                  L  Y QM+ LG+ P+N
Sbjct: 20  IQIKDPKHWN--SVIKHQANLKNDQAI-----------------LSAYTQMESLGVLPNN 60

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
            T P V  +CA   A+  G S+H S+    L +D  V  +++  Y +CG ++ AR VFD 
Sbjct: 61  TTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDA 120

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           + +RD+V WN+M+ GY   G  +EA+ L   M  E   P+  T+V++L +C    +L LG
Sbjct: 121 MSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLG 180

Query: 240 KWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           + V G+ ++N M D N ++ +ALI  Y +    V    +FD MV +++V+WNAMI+ Y  
Sbjct: 181 RGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLP-LLFDLMVVRNIVSWNAMISGYYD 239

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358
            G   +A+ LF +M    V  D +T++  + ACA +G+L LGK + + A +     D++ 
Sbjct: 240 VGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYI 299

Query: 359 -----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                      GS++ + ++FE +P  +   WN+MISA A  G   EA+ LF RM  EG 
Sbjct: 300 LNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEG- 358

Query: 408 AARPNDVTFIGVLSAC------------VHAGLVDEGRRL 435
             + ++ T + +LS C            +HA ++  G R+
Sbjct: 359 -VKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRI 397



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 14/311 (4%)

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           +I+ +D   WNS+I   + +   +  +  + +M     LP+  TL  VL +C     +  
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           GK +   +    +  +  +G+A++D Y KCG +  AR VFDAM ++DVV WNAM+  Y  
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RHD 355
            G   EA++L   M    + P+  T++ +L AC     L LG+ V  Y  + G+      
Sbjct: 139 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 198

Query: 356 IFCGSIDDALK--------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
           +    I   L+        +F+ M V N VSWNAMIS     G   +AL LF +M  +  
Sbjct: 199 VATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVD-- 256

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             + + VT +  + AC   G +  G+++  L +  F  +      + ++++Y+  G L  
Sbjct: 257 EVKFDCVTMLVAVQACAELGSLKLGKQIHQL-AIKFEFVEDLYILNALLNMYSNNGSLES 315

Query: 468 AWDFVERMPEK 478
           +    E +P +
Sbjct: 316 SHQLFESVPNR 326


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 198/585 (33%), Positives = 305/585 (52%), Gaps = 35/585 (5%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLR--EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL 58
           +LL  +     L    L  PS+ +   KLL+L       K  Q +HT ++ +  Q   F+
Sbjct: 39  LLLFRQMKQNGLEPNNLTFPSVAKACSKLLNL-------KYSQIVHTHVVKSRFQADLFV 91

Query: 59  LIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114
              ++D+        +A  LF ++   +  ++N MI G           + L+ +M   G
Sbjct: 92  QTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQL-GFVDRVVSLFCEMGIEG 150

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           ++ D+ T   +  S  +L  L    S+HS   KIG+D D  VS++ I  YA+CG+   A 
Sbjct: 151 IRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAE 210

Query: 175 KVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
            VFD I +  +  VSWNSMI+GY+      +AV  F +M    F  D  T++S+L SC  
Sbjct: 211 TVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQ 270

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L  GK +    ++   D +  + + LI MY KCG +  AR +FD M+ K  V+W AM
Sbjct: 271 PEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAM 330

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I   A+ G  +EA+ LF+ M+  G  PD +T+I ++S C   GAL+LGKW+D YA+  GL
Sbjct: 331 IAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGL 390

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           + ++            CGS+D+A ++F  MP  + VSW  +I+  A NG   EAL LF +
Sbjct: 391 KDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQ 450

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M + G   +PN +TF+ VL AC HAG +++G   F+LM+  + + P  +HYSCM DL  R
Sbjct: 451 MVELG--LKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGR 508

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            G L EA++F++ MP K D  +   LL AC+  +N  + + V   L E+E   +  YV  
Sbjct: 509 KGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQM 568

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQSNWK 566
           + I+A+   WD  A +R +M+     K+ G      + P  S W+
Sbjct: 569 ANIYASAGKWDRVAAIRTMMKCNKAMKSSG------EKPCSSKWE 607



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/395 (32%), Positives = 200/395 (50%), Gaps = 17/395 (4%)

Query: 98  QKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
           Q Y+H +L L+ QMK+ GL+P+N T+P V  +C+ LL L +   VH+ V K     D  V
Sbjct: 32  QGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFV 91

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             S++ MY +C +L  A  +F  +  RD+ SWNSMI G++++G+    V LF  M  E  
Sbjct: 92  QTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGI 151

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D +T++ +  S   L DL + + +  F +K  +D +  + +  I  Y KCG    A  
Sbjct: 152 RADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAET 211

Query: 277 VFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           VFD +    K  V+WN+MI  YA     ++A+  F +M   G   D  T++ +LS+C   
Sbjct: 212 VFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQP 271

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
             L  GK +  +  Q G   DI            CG I  A  +F++M     VSW AMI
Sbjct: 272 EVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMI 331

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +  A  G   EA+ LF  M   G   +P+ VT I ++S C   G ++ G+ + D  +++ 
Sbjct: 332 AGXAEKGDLDEAMTLFSAMEAVG--EKPDLVTIISLMSGCGQTGALELGKWI-DTYATAN 388

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           GL       + ++D+YA+ G +  A +    MPEK
Sbjct: 389 GLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEK 423



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 146/297 (49%), Gaps = 16/297 (5%)

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +  WNS I+     GYA +A+ LF +M++    P+ +T  SV  +C  L +L   + V  
Sbjct: 19  VAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            VVK++   + ++ ++++DMY KC  L  A  +F  M  +DV +WN+MI  +AQ G  + 
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDR 138

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
            + LF  M   G+  D +T+IG+  +  S+  L + + +  +  + G+  D+        
Sbjct: 139 VVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIA 198

Query: 358 ----CGSIDDALKVFE--DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
               CG    A  VF+  D  +   VSWN+MI+  A   +  +A+  F++M    G  R 
Sbjct: 199 AYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLX--GGFRA 256

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           +  T + +LS+CV   ++  G +L        G     +  + ++ +Y++ G +  A
Sbjct: 257 DLSTILSLLSSCVQPEVLFHG-KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSA 312


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 261/447 (58%), Gaps = 14/447 (3%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA   +   G + H+ + +IGL+ D   S+ LI MY++C  +DSARK F+E+  + LVSW
Sbjct: 53  CAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSW 112

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++I   ++    +EA++L  +M+ E    +E T+ SVL +C     ++    +  F +K
Sbjct: 113 NTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIK 172

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +D N ++G+AL+ +Y KC ++  A ++F++M  K+ VTW++M+  Y QNG   EA+++
Sbjct: 173 AAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLI 232

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F   +  G + D   +   +SACA +  L  GK V   + + G   +I+           
Sbjct: 233 FRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAK 292

Query: 358 CGSIDDALKVFED-MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
           CG I +A  VF+  + V + V WNAMIS  A + RA EA++LFE+M + G    P+DVT+
Sbjct: 293 CGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFF--PDDVTY 350

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + VL+AC H GL +EG++ FDLM     L P   HYSCM+D+  RAG + +A+D +ERMP
Sbjct: 351 VCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMP 410

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
                 + G+LL +C+   N + ++   + L E+E +N+GN+++ + I+A  K WD+ A+
Sbjct: 411 FNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVAR 470

Query: 537 MRALMREKGVSKTPGCSWIGIDDPKQS 563
            R L+RE  V K  G SWI I +   S
Sbjct: 471 ARKLLRETDVRKERGTSWIEIKNKIHS 497



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 171/330 (51%), Gaps = 23/330 (6%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F+++   +  ++N +I  LT   +    +LKL  QM+R G   + FT   V  +CA   A
Sbjct: 101 FNEMPVKSLVSWNTVIGALTQNAED-REALKLLIQMQREGTPFNEFTISSVLCNCAFKCA 159

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +   + +H+   K  +D +  V  +L+ +YA+C  +  A ++F+ + E++ V+W+SM++G
Sbjct: 160 ILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAG 219

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y + G+ +EA+ +F   +   F  D   + S + +C  L  L+ GK V     K+    N
Sbjct: 220 YVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSN 279

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
            Y+ S+LIDMY KCG +  A  VF  ++  + +V WNAMI+ +A++  + EA++LF +M+
Sbjct: 280 IYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQ 339

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372
             G  PD +T + VL+AC+ +G  + G K+ D    Q  L   +                
Sbjct: 340 QRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSV---------------- 383

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERM 402
               + ++ MI  L   G  H+A  L ERM
Sbjct: 384 ----LHYSCMIDILGRAGLVHKAYDLIERM 409


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/404 (41%), Positives = 247/404 (61%), Gaps = 16/404 (3%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSK-MGYAKEAVELFGRMREEEFL-PDEITLVS 225
           G +D ARK+F +I+  ++ SWNSMI G S+    +KE V LF +M    +  P+  T+  
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           VL +C  +  L  G+ V   V+K+    + ++ +AL++ Y KC  +V A +VFD + +++
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           +V W+ MI+ YA+ GL NEA+ LF  M+ AGV PD++T++ V+SACA+ GALD GKWV  
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
           Y +++ +  D+            CG I+ A +VF+ MPV +  +W++MI  LA NG A +
Sbjct: 287 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 346

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           AL  F RM  E    +PN VTFIGVLSAC H+GLV EGRR +  M   FG++P  E Y C
Sbjct: 347 ALEEFFRM--EEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGC 403

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514
           MVDL  RA  + +A   VE MP   + ++   LL  C+K KN D S+ V Q LLE+E  N
Sbjct: 404 MVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHN 463

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + NY++ S ++A++  W+  +++R  M+  G+   PGCS I +D
Sbjct: 464 AENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVD 507



 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 216/375 (57%), Gaps = 21/375 (5%)

Query: 30  LLKKCPSTKTVQQIHTQMLINF--IQKPNFLLIRIIDL------KDFNYASLLFHQISRP 81
           L++KC S + ++QIH ++L +   I   +F L +II         D +YA  LF QI RP
Sbjct: 63  LIRKCRSMRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRP 122

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVS 140
           N +++N MIRG + +       + L+ +M R G   P+ FT  FV  +C+ + AL  G  
Sbjct: 123 NIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQ 182

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH++V K G      V  +L+  YA+C  +  A KVFDEI +R+LV+W++MISGY+++G 
Sbjct: 183 VHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGL 242

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             EA+ LF  M++   +PDE+T+VSV+ +C   G L  GKWV  ++ K  ++ +  + +A
Sbjct: 243 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 302

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L++MY KCG +  A+ VFDAM  KD   W++MI   A NGL+ +A+  F RM+ A V P+
Sbjct: 303 LVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 362

Query: 321 KITLIGVLSACASIGALDLGK--W-------VDKYASQRGLRHDIFCGS--IDDALKVFE 369
            +T IGVLSACA  G +  G+  W       +       G   D+ C +  ++DA  + E
Sbjct: 363 HVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVE 422

Query: 370 DMPVT-NEVSWNAMI 383
            MP++ N V W  ++
Sbjct: 423 TMPISPNPVIWRTLL 437


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 175/534 (32%), Positives = 291/534 (54%), Gaps = 18/534 (3%)

Query: 41  QQIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H  ++ +NF   P     LL           A  +F Q+        N MI      
Sbjct: 264 RQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGN 323

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            + Y  +L LY +MK      D+FT   +   C+ + + + G +VH+ V K  +  +  +
Sbjct: 324 GRAYD-ALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAI 382

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             +L+TMY +CG  + A  VF  ++ERD+V+W SMI+G+ +    K+A++LF  M +E  
Sbjct: 383 QSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGV 442

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D   + SV+ +   L ++ LG  + GF +K  ++ + ++  +L+DMY K G    A  
Sbjct: 443 KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 502

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VF +M NK++V WN+MI+ Y+ NGL   +I L  ++   G   D +++  VL A +S+ A
Sbjct: 503 VFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAA 562

Query: 337 LDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L  GK +  Y  +  +  D           + CG +  A  +FE+MP  N V+WN+MI+ 
Sbjct: 563 LLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAG 622

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
              +G   EA+ LF+ M +   A  P++VTF+ ++++C H+G+V+EG  LF LM   +G+
Sbjct: 623 YGSHGNCEEAVRLFKEMKRSETA--PDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGV 680

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P+ EHY+ +VDL  RAG L +A+ F+  MP   D  V   LL AC+  +N ++ + V  
Sbjct: 681 EPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVAD 740

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            LL++E +   NYV    ++  ++MWD +A +RA M+ +G+ K+PGCSWI + +
Sbjct: 741 NLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKN 794



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 225/457 (49%), Gaps = 26/457 (5%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL-----KDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           +QIH  ++ N  +   +L   +I +     +     SL     +R N  A+NVMI G   
Sbjct: 162 RQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVE 221

Query: 96  --AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
              W+K   SL+LY   K    K  + ++   F +C++   L+ G  VH  V K+   +D
Sbjct: 222 NGMWEK---SLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDD 278

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
            +V  SL+TMYA+ G ++ A+KVFD++ ++++   N+MIS +   G A +A+ L+ +M+ 
Sbjct: 279 PYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKA 338

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
            E   D  T+ S+L  C  +G    G+ V   V+K  M  N  + SAL+ MY KCG+   
Sbjct: 339 GETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTED 398

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A  VF  M  +DVV W +MI  + QN    +A+ LF  M+  GV  D   +  V+SA   
Sbjct: 399 ADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLG 458

Query: 334 IGALDLGKWVDKYASQRGLRHDIF--CGSID---------DALKVFEDMPVTNEVSWNAM 382
           +  ++LG  +  +A +RGL  D+F  C  +D          A  VF  MP  N V+WN+M
Sbjct: 459 LENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSM 518

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           IS  ++NG    ++ L  ++ + G       +T + V  + V A L  +    + +    
Sbjct: 519 ISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ- 577

Query: 443 FGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              IP   +  + ++D+Y + G L  A    E MP +
Sbjct: 578 ---IPSDLQVENALIDMYVKCGCLKYAQLIFENMPRR 611



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 208/420 (49%), Gaps = 45/420 (10%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           KYS +L+L+ +     L    FT+P +  +CA+L  L HG ++H+S+  +GL  D +++ 
Sbjct: 35  KYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIAT 94

Query: 159 SLITMYARCGKLDSARKVFDEIRER-----DLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
           SLI MY +CG L SA +VFD++ E      D+  WN +I GY K G+ +E +  F RM+E
Sbjct: 95  SLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE 154

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
                              L   + G+ + G++++N  + + Y+ +ALI MY  C   + 
Sbjct: 155 -------------------LSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPME 195

Query: 274 ARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
           A  +F  + N+ ++V WN MI  + +NG+  +++ L++  K         +  G  +AC+
Sbjct: 196 AWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 255

Query: 333 SIGALDLGKWV-----------DKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW-N 380
               LD G+ V           D Y     L      GS++DA KVF D  +  EV   N
Sbjct: 256 HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVF-DQVLDKEVELRN 314

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLM 439
           AMISA   NGRA++AL L+ +M  + G    +  T   +LS C   G  D GR +  +++
Sbjct: 315 AMISAFIGNGRAYDALGLYNKM--KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVI 372

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTD 498
             S  +       S ++ +Y + G   +A      M E+ D +  G+++ G CQ ++  D
Sbjct: 373 KRS--MQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER-DVVAWGSMIAGFCQNRRFKD 429



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 149/344 (43%), Gaps = 63/344 (18%)

Query: 177 FDEIRERDLV-SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           F  +R+ ++  S NS I    + G   +A+EL  +         + T  S+L +C  L +
Sbjct: 11  FYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSN 70

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-----DVVTWN 290
           L  G+ +   +V   +  + Y+ ++LI+MY KCG L  A +VFD M        D+  WN
Sbjct: 71  LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWN 130

Query: 291 AMITAYAQNGLSNEAIMLFNRMK-------------------YAGVNPDKITLIGVLSAC 331
            +I  Y + G   E +  F RM+                   + G    +  LIG+ S+C
Sbjct: 131 PVIDGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSC 190

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +                 R +      G +++          +N V+WN MI     NG 
Sbjct: 191 S-----------------RPMEAWSLFGKLENR---------SNIVAWNVMIGGFVENGM 224

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSE 450
             ++L L+     E    +    +F G  +AC H  ++D GR++  D++  +F    + +
Sbjct: 225 WEKSLELYSLAKNEN--CKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNF----QDD 278

Query: 451 HYSC--MVDLYARAGHLSEAWDFVERMPEKVDEI---VLGALLG 489
            Y C  ++ +YA++G + +A    +++ +K  E+   ++ A +G
Sbjct: 279 PYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIG 322


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 180/503 (35%), Positives = 275/503 (54%), Gaps = 16/503 (3%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFIS 128
           +AS +F  IS  +  ++  MI G T    +   +L L+  M R G  +P+ F +  VF +
Sbjct: 311 HASDVFTMISTKDLISWASMITGFTQLGYEI-EALYLFRDMFRQGFYQPNEFIFGSVFSA 369

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C +LL    G  +H    K GL  +     SL  MYA+ G L SA + F +I   DLVSW
Sbjct: 370 CRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSW 429

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++I+ +S  G   EA+  F +M     +PD IT +S+L +CG    +  G  +  +++K
Sbjct: 430 NAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIK 489

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
             +D    + ++L+ MY KC  L  A  VF D   N ++V+WNA+++A  Q+  + E   
Sbjct: 490 IGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFR 549

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF  M ++   PD IT+  +L  CA + +L++G  V  ++ + GL  D+           
Sbjct: 550 LFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYA 609

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CGS+  A  VF      + VSW+++I   A  G  HEAL LF  M   G   +PN+VT+
Sbjct: 610 KCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLG--VQPNEVTY 667

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +GVLSAC H GLV+EG   ++ M    G+ P  EH SCMVDL ARAG L EA +F+++M 
Sbjct: 668 LGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMG 727

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
              D  +   LL +C+   N D+++R  + +L+++ SNS   V+ S I A++  W + A+
Sbjct: 728 FNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVAR 787

Query: 537 MRALMREKGVSKTPGCSWIGIDD 559
           +R LM++ GV K PG SWI + D
Sbjct: 788 LRNLMKQMGVQKVPGQSWIAVKD 810



 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 233/448 (52%), Gaps = 19/448 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY-YQMKRLGLKPDNFTYPFVFISCANL 132
           L  Q SR  E + N  I  L    + Y  +L  + +  K   ++ ++ TY  + ++C ++
Sbjct: 114 LIKQHSR--ELSTNSYIN-LMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSI 170

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            +L +G  +H  + K     D  + + ++ MY +CG L  ARK FD ++ R++VSW  MI
Sbjct: 171 RSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMI 230

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           SGYS+ G   +A+ ++ +M +  + PD +T  S++ +C   GD+ LG+ + G V+K+  D
Sbjct: 231 SGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYD 290

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +    +ALI MY + G +V A  VF  +  KD+++W +MIT + Q G   EA+ LF  M
Sbjct: 291 HHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDM 350

Query: 313 KYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS----------- 360
              G   P++     V SAC S+   + G+ +    ++ GL  ++F G            
Sbjct: 351 FRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGF 410

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +  A++ F  +   + VSWNA+I+A + +G  +EA+  F +M   G    P+ +TF+ +L
Sbjct: 411 LPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTG--LMPDGITFLSLL 468

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
            AC     +++G ++   +    GL  ++   + ++ +Y +  +L +A++  + + E  +
Sbjct: 469 CACGSPVTINQGTQIHSYI-IKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENAN 527

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLL 508
            +   A+L AC + K      R+ +L+L
Sbjct: 528 LVSWNAILSACLQHKQAGEVFRLFKLML 555



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 235/466 (50%), Gaps = 32/466 (6%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRII--------DLKDFNYASLLFHQ 77
           +L+  C S ++++   +IH  +L +  Q P+ +L   I         LKD   A   F  
Sbjct: 162 NLILACTSIRSLKYGKKIHDHILKSNCQ-PDLVLQNHILNMYGKCGSLKDARKA---FDT 217

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           +   N  ++ +MI G +   Q+ + ++ +Y QM + G  PD  T+  +  +C     ++ 
Sbjct: 218 MQLRNVVSWTIMISGYSQNGQE-NDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDL 276

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H  V K G D      ++LI+MY R G++  A  VF  I  +DL+SW SMI+G+++
Sbjct: 277 GRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQ 336

Query: 198 MGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +GY  EA+ LF  M R+  + P+E    SV  +C  L +   G+ + G   K  +  N +
Sbjct: 337 LGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVF 396

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            G +L DMY K G L  A R F  + + D+V+WNA+I A++ +G  NEAI  F +M + G
Sbjct: 397 AGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTG 456

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           + PD IT + +L AC S   ++ G  +  Y  + GL  +             C ++ DA 
Sbjct: 457 LMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAF 516

Query: 366 KVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            VF+D+    N VSWNA++SA   + +A E   LF+ M       +P+++T   +L  C 
Sbjct: 517 NVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFS--ENKPDNITITTILGTCA 574

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
               ++ G ++    S   GL+      + ++D+YA+ G L  A D
Sbjct: 575 ELASLEVGNQV-HCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARD 619


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 193/611 (31%), Positives = 312/611 (51%), Gaps = 89/611 (14%)

Query: 27  LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L  +LK C   PS +     H  +  N  +   F+   ++ +         AS++F +I+
Sbjct: 13  LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 72

Query: 80  R---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFI-----SCA 130
           +    +  ++N ++     +   ++ +L L+ +M  +   KP N     + I     +C 
Sbjct: 73  QRGIDDVISWNSIVSAHVKSSNAWT-ALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L A+     VH +  + G   D  V ++LI  YA+CG +++A KVF+ +  +D+VSWN+
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 191 MISGYSKMGYAKEAVELFGRMREEEF---------------------------------- 216
           M++GYS+ G  K A ELF  MR+E                                    
Sbjct: 192 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 251

Query: 217 -LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM----------DLNFYMGSALIDMY 265
            LP+ +T++SVL +C  LG    G  +  + +KN +          D +  + +ALIDMY
Sbjct: 252 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 311

Query: 266 GKCGALVPARRVFD--AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDK 321
            KC +   AR +FD   +  ++VVTW  MI  +AQ G SN+A+ LF  M  +  GV P+ 
Sbjct: 312 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 371

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------------CGSIDDA 364
            T+  +L ACA + A+ +GK +  Y     LRH  +                 CG +D A
Sbjct: 372 YTISCILMACAHLAAIRIGKQIHAYV----LRHHQYDSSAYFVANCLINMYSKCGDVDTA 427

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF+ M   + +SW +M++    +GR  EAL +F++M K G    P+D+TF+ VL AC 
Sbjct: 428 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFV--PDDITFLVVLYACS 485

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H G+VD+G   FD MS+ +GL P++EHY+  +DL AR G L +AW  V+ MP +   +V 
Sbjct: 486 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 545

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            ALL AC+   N ++++  +  L+E+ + N G+Y + S I+A    W D A++R LM++ 
Sbjct: 546 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 605

Query: 545 GVSKTPGCSWI 555
           G+ K PGCSW+
Sbjct: 606 GIKKRPGCSWV 616



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 215/443 (48%), Gaps = 80/443 (18%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R G + D+FT P V  +C  L +   G + H  +   G + +  + ++L+ MY+RCG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 170 LDSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRM------REEEFLPDE 220
           L+ A  +FDEI +R   D++SWNS++S + K   A  A++LF +M      +      D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           I++V++L +CG L  +   K V G  ++N   L+ ++G+ALID Y KCG +  A +VF+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 281 MVNKDVVTWNAM-----------------------------------ITAYAQNGLSNEA 305
           M  KDVV+WNAM                                   I  Y+Q G S+EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR----------GLRHD 355
           + +F +M ++G  P+ +T+I VLSACAS+GA   G  +  Y+ +           G   D
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 356 IF-----------CGSIDDALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERM 402
           +            C S   A  +F+D+P+   N V+W  MI   A  G +++AL LF  M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM-------SSSFGLIPKSEHYSCM 455
             E     PN  T   +L AC H   +  G+++   +       SS++ +       +C+
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVA------NCL 414

Query: 456 VDLYARAGHLSEAWDFVERMPEK 478
           +++Y++ G +  A    + M +K
Sbjct: 415 INMYSKCGDVDTARHVFDSMSQK 437


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 260/458 (56%), Gaps = 15/458 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+R G+  D  TY  +   C+   A+  G  VH  +F  G +    V ++L+ MY +   
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L+ A  +FDE+ ER++VSW +MIS YS      +A++    M  E   P+  T  SVL +
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRA 164

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L +L   + +   ++K  ++ + ++ SALID+Y K   L  A  VFD M  +D+V W
Sbjct: 165 CDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD----K 345
           N++I  +AQN   NEA+ LF RMK AG   D+ TL  VL AC  +  L+LG+ V     K
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK 281

Query: 346 YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +     L + +      CGS++DA   F  M   + +SW+ M++ LA NG + +AL LFE
Sbjct: 282 FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFE 341

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M + G  +RPN +T +GVL AC HAGLV++G   F  M   FG+ P  EHY C++DL  
Sbjct: 342 SMKESG--SRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLG 399

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG L EA   +  M  + D +    LLGAC+  +N D++    + ++E+E  ++G Y++
Sbjct: 400 RAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYIL 459

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            S I+AN + W+D A++R  M  +G+ KTPGCSWI +D
Sbjct: 460 LSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVD 497



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 16/350 (4%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
           S+L+ C     ++Q+H  ++   ++   F+   +ID+     D + A  +F ++   +  
Sbjct: 160 SVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLV 219

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N +I G        + +L L+ +MKR G   D  T   V  +C  L  L  G  VH  
Sbjct: 220 VWNSIIGGFAQN-SDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVH 278

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V K   D+D  ++++LI MY +CG L+ A   F  + E+D++SW++M++G ++ GY+++A
Sbjct: 279 VLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQA 336

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDLNFYMGSALI 262
           +ELF  M+E    P+ IT++ VL +C   G LV   W     +K    +D        LI
Sbjct: 337 LELFESMKESGSRPNYITVLGVLFACSHAG-LVEKGWYYFRSMKKLFGVDPGREHYGCLI 395

Query: 263 DMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP-D 320
           D+ G+ G L  A ++   M    D VTW  ++ A   +   N  + ++   K   + P D
Sbjct: 396 DLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVH--RNVDLAIYAAKKIIELEPED 453

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG--SIDDALKVF 368
             T I + +  A+    +    V K  + RG+R    C    +D  + VF
Sbjct: 454 AGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVF 503



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 39/209 (18%)

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-- 360
           + A+   + M+  GV  D IT   ++  C++ GA+  GK V ++   +G    +F  +  
Sbjct: 37  HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTL 96

Query: 361 ---------IDDALKVFEDMPVTNEVSWNAMISALA--FNGRAHEALLLFERMSKEGGAA 409
                    +++A  +F++MP  N VSW  MISA +   N +A + L+L   M +EG   
Sbjct: 97  LNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLIL---MFREG--V 151

Query: 410 RPNDVTFIGVLSAC--------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           RPN  T+  VL AC        +H G++  G     L S  F         S ++D+Y++
Sbjct: 152 RPNMFTYSSVLRACDGLPNLRQLHCGIIKTG-----LESDVFV-------RSALIDVYSK 199

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGA 490
              L  A    + MP + D +V  +++G 
Sbjct: 200 WSDLDNALGVFDEMPTR-DLVVWNSIIGG 227


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 178/551 (32%), Positives = 295/551 (53%), Gaps = 24/551 (4%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINF----IQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           + SL+  C   + +++   +H  ++I      I     LL         + A  +F  + 
Sbjct: 13  VTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGME 72

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             + +A++ +I     A  +   ++ LY +M   G++P+  T+      CA++  L  G 
Sbjct: 73  IKDLFAWSSIISAYARAG-RGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGR 131

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           ++H  +    + +DD +  SL+ MY +C ++  ARKVF+ ++ R++ S+ +MIS Y + G
Sbjct: 132 AIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAG 191

Query: 200 YAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              EA+ELF RM + E + P+  T  ++LG+   LG+L  G+ V   +     D N  + 
Sbjct: 192 EHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 251

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+ MYGKCG+ V AR+VFD+M  ++V++W +MI AYAQ+G   EA+ LF RM    V 
Sbjct: 252 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMD---VE 308

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVF 368
           P  ++    L+ACA +GALD G+ +     +  L               CGS+DDA +VF
Sbjct: 309 PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCGSLDDARRVF 368

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             M   +  S NAMI+A   +GR  +AL ++ RM +EG  A  + +TF+ VL AC H  L
Sbjct: 369 NRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPA--DGITFVSVLVACSHTSL 426

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V + R  F  +    G++P  EHY CMVD+  R+G L +A + VE MP + D +    LL
Sbjct: 427 VADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLL 486

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
             C++  + +  +R  + + E+  + +  YV  S ++A  K +DD+ ++R  M E+GV+ 
Sbjct: 487 SGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTT 546

Query: 549 TPGCSWIGIDD 559
               S+I ID+
Sbjct: 547 PVAVSYIEIDN 557



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 209/393 (53%), Gaps = 20/393 (5%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+  G+  D F    +  +C  L AL  G  +H  +   G   D  +  +L+ MYA+CG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           LD A++VF+ +  +DL +W+S+IS Y++ G  + AV L+ RM  E   P+ +T    LG 
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  +  L  G+ +   ++ +K+  +  +  +L++MY KC  +V AR+VF+ M  ++V ++
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 290 NAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
            AMI+AY Q G   EA+ LF+RM K   + P+  T   +L A   +G L+ G+ V ++ +
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            RG   ++            CGS  +A KVF+ M   N +SW +MI+A A +G   EAL 
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF+RM  E     P+ V+F   L+AC   G +DEGR +   +  +    P+ E  + ++ 
Sbjct: 301 LFKRMDVE-----PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLS 353

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +YAR G L +A     RM  + D     A++ A
Sbjct: 354 MYARCGSLDDARRVFNRMKTR-DAFSCNAMIAA 385


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/437 (38%), Positives = 264/437 (60%), Gaps = 13/437 (2%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G++ H+ + ++GL  D   S+ L+ MY++CG ++SARK+FDE+  R LVSWN+M+  +++
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  ++A+ LF +M++E     E T+ SV+ +C     +   K + GF +K  +D N ++
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 185

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+D+Y KCG +  A  VF+ M  +  VTW++M+  Y QN L  EA++LF+R +  G+
Sbjct: 186 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 245

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
             ++ T+   LSACA+  AL  GK V   + + G+  +IF           CG I++A  
Sbjct: 246 EHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYT 305

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  +   N V WNA++S  + + R+ EA++ FE+M + G    PND+T+I VLSAC H 
Sbjct: 306 VFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGIC--PNDITYISVLSACSHL 363

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV++GR+ FDLM     + P   HYSCMVD+  RAG L EA DF++RMP      + G+
Sbjct: 364 GLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGS 423

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL +C+  +N ++++   + L EIE  N+GN+V+ S I+A    W++ A+ R L++E   
Sbjct: 424 LLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKA 483

Query: 547 SKTPGCSWIGIDDPKQS 563
            K  G SWI I     S
Sbjct: 484 KKERGKSWIEIKHKVHS 500



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 173/339 (51%), Gaps = 20/339 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +  ++N M+ G  T       +L L+ QM++ G     FT   V  +CA
Sbjct: 101 ARKLFDEMPVRSLVSWNTMV-GSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA 159

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               +     +H    K  LD +  V  +L+ +YA+CG +  A  VF+ + ER  V+W+S
Sbjct: 160 AKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSS 219

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M++GY +    +EA+ LF R +      ++ T+ S L +C     L+ GK V+    K  
Sbjct: 220 MVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG 279

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  N ++ S+LIDMY KCG +  A  VF ++  K+VV WNA+++ ++++  S EA++ F 
Sbjct: 280 IGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFE 339

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370
           +M+  G+ P+ IT I VLSAC+ +G ++ G+   KY               D  ++V   
Sbjct: 340 KMQQMGICPNDITYISVLSACSHLGLVEKGR---KY--------------FDLMIRVHNV 382

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
            P  N + ++ M+  L   G  HEA    +RM  +  A+
Sbjct: 383 SP--NVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 419


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 298/554 (53%), Gaps = 30/554 (5%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQI 78
           +  + L LL++C + KT+ QIH  +L N I     +L + I     L    +A  LF   
Sbjct: 1   MERECLFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNR 60

Query: 79  S-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALN 136
           S R + +  N MI+      ++ + +  LY  ++R     PDNFT+  +   CA  +A+ 
Sbjct: 61  SHRGDTFLCNSMIKS-HVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVW 119

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G+  H  V KIG   D +VS +L+ MYA+ G L  ARKVF+++ +R LVSW ++I GY 
Sbjct: 120 EGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYV 179

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G    A  LF  M       D      ++     +GD+   +     +     + N  
Sbjct: 180 RRGDMGNAWFLFKLMPGR----DSAAFNLLIDGYVKVGDMESAR----SLFDEMPERNVI 231

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
             +++I  Y   G ++ AR +FDAM  K++V+WNAMI  Y QN   +EA+ LF  ++ + 
Sbjct: 232 SWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSST 291

Query: 317 V-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDA 364
           V  P+++T++ +L A A++GAL+LG+WV ++  ++ L           D++  CG I  A
Sbjct: 292 VFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKA 351

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVF ++P     +WNA+I+  A NG A EAL  F  M +EG   +PND+T  GVLSAC 
Sbjct: 352 RKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEG--IKPNDITMTGVLSACS 409

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H GLV+EG+  F  M  S GL PK EHY C+VDL  RAG L EA + ++ MP + + I+L
Sbjct: 410 HGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIIL 468

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
            +   AC    +   +QRV+   + +E  N+G YV+   ++A  + W D  ++  LMR +
Sbjct: 469 SSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRR 528

Query: 545 GVSKTPGCSWIGID 558
           G  K  G S I +D
Sbjct: 529 GAKKEVGSSAIEVD 542


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 288/533 (54%), Gaps = 19/533 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H  ++        FL   ++++     + ++A  LF  + + N  ++  MI GL+  
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
             K+S +++ +  M+  G  P  F +     +CA+L ++  G  +H    K G+  +  V
Sbjct: 85  -SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             +L  MY++CG +  A KVF+E+  +D VSW +MI GYSK+G  +EA+  F +M +EE 
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D+  L S LG+CG L     G+ V   VVK   + + ++G+AL DMY K G +  A  
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASN 263

Query: 277 VFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           VF      ++VV++  +I  Y +     + + +F  ++  G+ P++ T   ++ ACA+  
Sbjct: 264 VFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQA 323

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           AL+ G  +     +     D F           CG ++ A++ F+++    E++WN+++S
Sbjct: 324 ALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVS 383

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               +G   +A+  FERM   G   +PN +TFI +L+ C HAGLV+EG   F  M  ++G
Sbjct: 384 VFGQHGLGKDAIKFFERMVDRG--VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYG 441

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
           ++P  EHYSC++DL  RAG L EA +F+ RMP + +     + LGAC+   + ++ +   
Sbjct: 442 VVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAA 501

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + L+++E  NSG  V+ S I+AN + W+D   +R  MR+  V K PG SW+ +
Sbjct: 502 EKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 174/347 (50%), Gaps = 17/347 (4%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G  +H+ +   G      +++ L+ MY++CG+LD A K+FD + +R+LVSW +MISG
Sbjct: 21  LRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISG 80

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            S+     EA+  F  MR    +P +    S + +C  LG + +GK +    +K  +   
Sbjct: 81  LSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSE 140

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++GS L DMY KCGA+  A +VF+ M  KD V+W AMI  Y++ G   EA++ F +M  
Sbjct: 141 LFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMID 200

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDD 363
             V  D+  L   L AC ++ A   G+ V     + G   DIF G+           ++ 
Sbjct: 201 EEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMES 260

Query: 364 ALKVFE-DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           A  VF  D    N VS+  +I       +  + L +F  + ++G    PN+ TF  ++ A
Sbjct: 261 ASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG--IEPNEFTFSSLIKA 318

Query: 423 CVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           C +   +++G +L   +M  +F   P     S +VD+Y + G L  A
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEHA 363


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 177/503 (35%), Positives = 276/503 (54%), Gaps = 26/503 (5%)

Query: 70  YASLLFHQ-ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFI 127
           YA  LF Q   R + +  N MI+      + Y+ S   Y  + K   L PDNFT+  +  
Sbjct: 28  YARKLFDQRPHREDSFLCNSMIKAYLET-RHYNDSFAFYRDLRKETCLAPDNFTFTTMTK 86

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SC   + +  G+ +HS +++ G   D +VS  ++ MYA+ GK+  AR VFDE+ +R  VS
Sbjct: 87  SCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVS 146

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W ++I GY + G    A +LF +M +   + D +   +++      GD+   + +   + 
Sbjct: 147 WTALICGYVRFGELDLASKLFDQMPQ---VKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              +       + +I  Y     +  AR++FDAM  +++V+WN MI  Y QN    EAI 
Sbjct: 204 HKTV----ITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIR 259

Query: 308 LFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF 357
           LF  M+    ++PD +T++ VL A +  GAL LG+W   +  ++ L           D++
Sbjct: 260 LFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMY 319

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG I+ A ++F++MP     SWNAMI   A NG AH AL LF  M+KE    +P+++T
Sbjct: 320 SKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKE---EKPDEIT 376

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            + V+SAC H GLV+EGR+ F +M   FGL  K EHY CMVDL  RAG+L +A   +  M
Sbjct: 377 MLAVISACNHGGLVEEGRKWFQMMRK-FGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNM 435

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P K + I+L + L AC + K+ + ++R+++  +E+E  N GNYV+   ++A  K WDD  
Sbjct: 436 PFKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFG 495

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            ++ +MR+    K  GCS I I+
Sbjct: 496 MVKNMMRKNEAKKEVGCSLIEIN 518


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 186/577 (32%), Positives = 313/577 (54%), Gaps = 33/577 (5%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPSTK------TVQQIHTQMLINFIQKPNFLLI 60
           A + HL F E+N  S  R  ++S++   P         T +QIH  ++   +     +  
Sbjct: 90  AEAIHL-FCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGN 148

Query: 61  RIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL 113
            ++D+       KD   +  +F +IS  N  ++N +I  L    ++   +L+++  M   
Sbjct: 149 ALVDVYGKCGYVKD---SRRVFDEISERNGVSWNAIITSLAY-LERNQDALEMFRLMIDG 204

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+KP++ T+  +      L   + G  +H    + GL+ D  V+++LI MYA+ G+   A
Sbjct: 205 GVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQA 264

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
             VF++I E+++VSWN+M++ +++      AV+L  +M+ +  +P+ +T  +VL +C  +
Sbjct: 265 SNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARI 324

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           G L  GK +    ++    ++ ++ +AL DMY KCG L  ARRVF   + +D V++N +I
Sbjct: 325 GFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISL-RDEVSYNILI 383

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
             Y+Q    +E++ LF  M   G+  D ++ +GV+SACA++ AL  GK V   A ++ L 
Sbjct: 384 IGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLH 443

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
             +F           CG ID A KVF  +P  +  SWN+MI      G    A+ LFE M
Sbjct: 444 THLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAM 503

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            ++G     + V++I VLSAC H GLV+EG++ F+ M     + P   HY+CMVDL  RA
Sbjct: 504 KEDG--VEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQ-NIKPTQMHYACMVDLLGRA 560

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G + EA   +E +P + D  V GALLGAC+     +++    + L +++  +SG Y + S
Sbjct: 561 GLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLS 620

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++A    WD++ ++R LM+ +G  K PGCSW+ ID+
Sbjct: 621 NMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDN 657



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 202/371 (54%), Gaps = 21/371 (5%)

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           +G++ D+ T+PFV  +CA+ L++  G  +H  VFK+G D D  V ++L+  Y  CG L  
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR-EEEFLPDEITLVSVLGSCG 231
            ++VFDE+ ERD+VSWNS+I  +S  G+  EA+ LF  M     F P+ +++VSVL  C 
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            L D V G+ +  +VVK  +D    +G+AL+D+YGKCG +  +RRVFD +  ++ V+WNA
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           +IT+ A    + +A+ +F  M   GV P+ +T   +L     +   D GK +  ++ + G
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 352 LRHDIFCGS--ID---------DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  DIF  +  ID          A  VF  +   N VSWNAM++  A N     A+ L  
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVR 300

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD---LMSSSFGLIPKSEHYSCMVD 457
           +M  +G    PN VTF  VL AC   G +  G+ +        SS  L       + + D
Sbjct: 301 QMQADGEI--PNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVS----NALTD 354

Query: 458 LYARAGHLSEA 468
           +YA+ G L+ A
Sbjct: 355 MYAKCGCLNLA 365



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 242/473 (51%), Gaps = 34/473 (7%)

Query: 30  LLKKCPSTKTVQ---QIHTQML-INF---IQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LK C  + +VQ   +IH  +  + F   +   N LL+   +         +F ++   +
Sbjct: 13  VLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERD 72

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N +I G+ +    Y+ ++ L+ +M  R G +P+  +   V   CA L     G  +
Sbjct: 73  VVSWNSVI-GVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQI 131

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V K GLD    V ++L+ +Y +CG +  +R+VFDEI ER+ VSWN++I+  + +   
Sbjct: 132 HCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERN 191

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++A+E+F  M +    P+ +T  S+L    +L     GK + GF ++  ++ + ++ +AL
Sbjct: 192 QDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANAL 251

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMY K G  + A  VF+ +  K++V+WNAM+  +AQN L   A+ L  +M+  G  P+ 
Sbjct: 252 IDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNS 311

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           +T   VL ACA IG L  GK +   A + G   D+F           CG ++ A +VF+ 
Sbjct: 312 VTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFK- 370

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           + + +EVS+N +I   +      E+L LF  M  +G   + + V+++GV+SAC +   + 
Sbjct: 371 ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKG--MKLDVVSYMGVISACANLAALK 428

Query: 431 EGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEAWDFVERMPEK 478
           +G+ +  L       + K  H      + ++D Y + G +  A     ++P +
Sbjct: 429 QGKEVHGLA------VRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSR 475


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 175/488 (35%), Positives = 276/488 (56%), Gaps = 18/488 (3%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL-NHGVSVHSS 144
           +N M+         YS +L L+  M++  + PD+FT   V ISC ++L L N+G SVH+ 
Sbjct: 341 WNAMVAAYAENDYGYS-ALDLFGFMRQKSVLPDSFTLSNV-ISCCSVLGLYNYGKSVHAE 398

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           +FK  +     +  +L+T+Y++CG    A  VF  + E+D+V+W S+ISG  K G  KEA
Sbjct: 399 LFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEA 458

Query: 205 VELFGRMREEE--FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +++FG M++++    PD   + SV  +C  L  L  G  V G ++K  + LN ++GS+LI
Sbjct: 459 LKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLI 518

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D+Y KCG    A +VF +M  +++V WN+MI+ Y++N L   +I LFN M   G+ PD +
Sbjct: 519 DLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSV 578

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDM 371
           ++  VL A +S  +L  GK +  Y  + G+  D           + CG    A  +F+ M
Sbjct: 579 SITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM 638

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + ++WN MI     +G    AL LF+ M K G +  P+DVTF+ ++SAC H+G V+E
Sbjct: 639 QHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGES--PDDVTFLSLISACNHSGFVEE 696

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G+ +F+ M   +G+ P  EHY+ MVDL  RAG L EA+ F++ MP + D  +   LL A 
Sbjct: 697 GKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSAS 756

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N ++     + LL +E      YV    ++    + +++AK+  LM+EKG+ K PG
Sbjct: 757 RTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPG 816

Query: 552 CSWIGIDD 559
           CSWI + D
Sbjct: 817 CSWIEVSD 824



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/458 (31%), Positives = 223/458 (48%), Gaps = 26/458 (5%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKDFNY-----ASLLFHQIS-RPNEYAFNVMIRGLT 94
           +QIH  ML N +   +FL   +ID+  F +     A  +F +I  + N   +NVMI G  
Sbjct: 190 KQIHGFMLRNSLDTDSFLKTALIDMY-FKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFG 248

Query: 95  TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
            +    S SL LY   K   +K  + ++     +C+       G  +H  V K+GL  D 
Sbjct: 249 GSGICES-SLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDP 307

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +V  SL++MY++CG +  A  VF  + ++ L  WN+M++ Y++  Y   A++LFG MR++
Sbjct: 308 YVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQK 367

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
             LPD  TL +V+  C  LG    GK V   + K  +     + SAL+ +Y KCG    A
Sbjct: 368 SVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDA 427

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK--YAGVNPDKITLIGVLSACA 332
             VF +M  KD+V W ++I+   +NG   EA+ +F  MK     + PD   +  V +ACA
Sbjct: 428 YLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACA 487

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            + AL  G  V     + GL  ++F           CG  + ALKVF  M   N V+WN+
Sbjct: 488 GLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNS 547

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MIS  + N     ++ LF  M  +G    P+ V+   VL A      + +G+ L    + 
Sbjct: 548 MISCYSRNNLPELSIDLFNLMLSQG--IFPDSVSITSVLVAISSTASLLKGKSLHGY-TL 604

Query: 442 SFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEK 478
             G IP   H  + ++D+Y + G    A +  ++M  K
Sbjct: 605 RLG-IPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHK 641



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 201/387 (51%), Gaps = 25/387 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFIS 128
           A L+F  +   +  A+  +I GL     K+  +LK++  MK     LKPD+     V  +
Sbjct: 427 AYLVFKSMEEKDMVAWGSLISGLCKN-GKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA L AL  G+ VH S+ K GL  +  V  SLI +Y++CG  + A KVF  +   ++V+W
Sbjct: 486 CAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAW 545

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           NSMIS YS+    + +++LF  M  +   PD +++ SVL +      L+ GK + G+ ++
Sbjct: 546 NSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 605

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +  + ++ +ALIDMY KCG    A  +F  M +K ++TWN MI  Y  +G    A+ L
Sbjct: 606 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSL 665

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF- 357
           F+ MK AG +PD +T + ++SAC   G ++ GK +       Y  +  + H     D+  
Sbjct: 666 FDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLG 725

Query: 358 -CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFE---RMSKEGGAARPN 412
             G +++A    + MP+  + S W  ++SA   +      +L  E   RM  E G+    
Sbjct: 726 RAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGS---- 781

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLM 439
             T++ +++  + AGL +E  +L  LM
Sbjct: 782 --TYVQLINLYMEAGLKNEAAKLLGLM 806



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 136/440 (30%), Positives = 208/440 (47%), Gaps = 40/440 (9%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP---DNFTYPFVFISCANLLALNHGVSV 141
           + N  IR L    + Y  +L LY   K  G  P     FT+P +  +C+ L  L++G ++
Sbjct: 26  SINSGIRALIQKGE-YLQALHLY--SKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-------EIRERDLVSWNSMISG 194
           H SV  +G   D  ++ SL+ MY +CG LD A +VFD        +  RD+  WNSMI G
Sbjct: 83  HGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDG 142

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL--GKWVEGFVVKNKMD 252
           Y K    KE V  F RM      PD  +L  V+      G+     GK + GF+++N +D
Sbjct: 143 YFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLD 202

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNR 311
            + ++ +ALIDMY K G  + A RVF  + +K +VV WN MI  +  +G+   ++ L+  
Sbjct: 203 TDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYML 262

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
            K   V     +  G L AC+       G+ +     + GL +D +           CG 
Sbjct: 263 AKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGM 322

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           + +A  VF  +       WNAM++A A N   + AL LF  M ++  +  P+  T   V+
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQK--SVLPDSFTLSNVI 380

Query: 421 SACVHAGLVDEGR----RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           S C   GL + G+     LF     S   I      S ++ LY++ G   +A+   + M 
Sbjct: 381 SCCSVLGLYNYGKSVHAELFKRPIQSTSTIE-----SALLTLYSKCGCDPDAYLVFKSME 435

Query: 477 EKVDEIVLGALL-GACQKQK 495
           EK D +  G+L+ G C+  K
Sbjct: 436 EK-DMVAWGSLISGLCKNGK 454


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 251/454 (55%), Gaps = 14/454 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           DN++      + A + +L+ G   H+   K+ L  D  V ++LI MY+ C    SAR V 
Sbjct: 92  DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 151

Query: 178 DEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           D       D+VSWN++I+GY + G   +A++ F +M +E+   DE+TL++VL +C   G 
Sbjct: 152 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 211

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G      VV N  ++N Y+GS+L+ MY KCG +  ARRVF+ M  ++VV W +MI  
Sbjct: 212 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 271

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
             Q+G   EA+ LF  M+ AGV  D  T+  V+S+C  +GALDLG+++  Y    GL  +
Sbjct: 272 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE 331

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG ++ A ++F  +   +  +W  MI   A NG   EAL LF +M  
Sbjct: 332 LSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEG 391

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           E     PN+V F+GVL+AC H GLV++G   F  MS  + L+P+ EHY CMVDL  RA  
Sbjct: 392 ED-KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKL 450

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L+EA  F++ MP   D +V  +LL AC+      +++   + + ++E    G +V+ S +
Sbjct: 451 LAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNV 510

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +A    W D   +R  M     SK PGCS+I +D
Sbjct: 511 YATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVD 544



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 207/397 (52%), Gaps = 21/397 (5%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQISR--P 81
           +S   + PS     Q H   L   +   +F+L  +I++    NY   A L+     R   
Sbjct: 100 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 159

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++N +I G        + +L+ ++QM +  ++ D  T   V ++CA   A+  G   
Sbjct: 160 DVVSWNTIIAGYIRGGMP-NKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 218

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V   G + + ++  SL++MYA+CG ++ AR+VF+ + ER++V W SMI+G ++ G  
Sbjct: 219 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRF 278

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KEAV+LF  M+      D+ T+ +V+ SCG +G L LG+++  +   + +     + ++L
Sbjct: 279 KEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSL 338

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG +  A ++F  +  +DV TW  MI  +A NGL  EA+ LF +M+    V P+
Sbjct: 339 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 398

Query: 321 KITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIFCGS--IDDALKVF 368
           ++  +GVL+AC+  G ++ G     +    Y     + H     D+   +  + +A +  
Sbjct: 399 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFI 458

Query: 369 EDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSK 404
           +DMPV  + V W +++ A   +G+   A    ER+ +
Sbjct: 459 KDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQ 495


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 166/404 (41%), Positives = 247/404 (61%), Gaps = 16/404 (3%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSK-MGYAKEAVELFGRMREEEFL-PDEITLVS 225
           G +D ARK+F +I+  ++ SWNSMI G S+    +KE V LF +M    +  P+  T+  
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           VL +C  +  L  G+ V   V+K+    + ++ +AL++ Y KC  +V A +VFD + +++
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           +V W+ MI+ YA+ GL NEA+ LF  M+ AGV PD++T++ V+SACA+ GALD GKWV  
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
           Y +++ +  D+            CG I+ A +VF+ MPV +  +W++MI  LA NG A +
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 277

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           AL  F RM  E    +PN VTFIGVLSAC H+GLV EGRR +  M   FG++P  E Y C
Sbjct: 278 ALEEFFRM--EEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGC 334

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514
           MVDL  RA  + +A   VE MP   + ++   LL  C+K KN D S+ V Q LLE+E  N
Sbjct: 335 MVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHN 394

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + NY++ S ++A++  W+  +++R  M+  G+   PGCS I +D
Sbjct: 395 AENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVD 438



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 210/367 (57%), Gaps = 21/367 (5%)

Query: 38  KTVQQIHTQMLINF--IQKPNFLLIRIIDL------KDFNYASLLFHQISRPNEYAFNVM 89
           + ++QIH ++L +   I   +F L +II         D +YA  LF QI RPN +++N M
Sbjct: 2   RVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSM 61

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           IRG + +       + L+ +M R G   P+ FT  FV  +C+ + AL  G  VH++V K 
Sbjct: 62  IRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKS 121

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G      V  +L+  YA+C  +  A KVFDEI +R+LV+W++MISGY+++G   EA+ LF
Sbjct: 122 GFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLF 181

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             M++   +PDE+T+VSV+ +C   G L  GKWV  ++ K  ++ +  + +AL++MY KC
Sbjct: 182 RDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKC 241

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G +  A+ VFDAM  KD   W++MI   A NGL+ +A+  F RM+ A V P+ +T IGVL
Sbjct: 242 GCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVL 301

Query: 329 SACASIGALDLGK--W-------VDKYASQRGLRHDIFCGS--IDDALKVFEDMPVT-NE 376
           SACA  G +  G+  W       +       G   D+ C +  ++DA  + E MP++ N 
Sbjct: 302 SACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNP 361

Query: 377 VSWNAMI 383
           V W  ++
Sbjct: 362 VIWRTLL 368


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 166/452 (36%), Positives = 263/452 (58%), Gaps = 22/452 (4%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y    ++C NL  +     VH+     G+ E+  V++ LI  Y+    LD A  +FD + 
Sbjct: 65  YISALVNCRNLTQVRQ---VHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMC 121

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREE---EFLPDEITLVSVLGSCGDLGDLVL 238
            RD VSW+ M+ G++K+G   + +  FG  RE       PD  TL  V+ +C DL +L +
Sbjct: 122 VRDSVSWSVMVGGFAKVG---DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM 178

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G+ +   V K  +DL+ ++ +AL+DMY KC  +  AR +FD M  +D+VTW  MI  YA+
Sbjct: 179 GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 238

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
            G +NE+++LF +M+  GV PDK+ ++ V+ ACA +GA+   + +D Y  ++  + D+  
Sbjct: 239 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 298

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG ++ A ++F+ M   N +SW+AMI+A  ++G+  +AL LF  M   G 
Sbjct: 299 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSG- 357

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              P+ +T   +L AC HAGLV+EG R F  M   + +    +HY+C+VDL  RAG L E
Sbjct: 358 -MLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDE 416

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A   ++ M  + DE + GA LGAC+  K+  ++++    LLE++S N G+YV+ S I+AN
Sbjct: 417 ALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYAN 476

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
              W+D AK+R LM ++ + KTPG +WI +D+
Sbjct: 477 AGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDN 508



 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 159/434 (36%), Positives = 256/434 (58%), Gaps = 19/434 (4%)

Query: 140  SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
             VH      G+ ++  V++ L+  Y+    LD A  +FD +  RD VSW+ M+ G++K+G
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 200  YAKEAVELFGRMREE---EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
               + +  FG  RE       PD  TL  V+ +C DL +L +G+ +   V K  +DL+ +
Sbjct: 816  ---DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHF 872

Query: 257  MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            + +AL+DMYGKC  +  AR +FD M  +D+VTW  MI  YA+ G +NE+++LF++M+  G
Sbjct: 873  VCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 932

Query: 317  VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
            V PDK+ ++ V+ ACA +GA+   + +D Y  ++  + D+            CG ++ A 
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 992

Query: 366  KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            ++F+ M   N +SW+AMI+A  ++G+  +AL LF  M + G    PN +T + +L AC H
Sbjct: 993  EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG--ILPNKITLVSLLYACSH 1050

Query: 426  AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            AGLV+EG R F  M   + +    +HY+C+VDL  RAG L EA   +  M  + DE + G
Sbjct: 1051 AGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110

Query: 486  ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
            A LGAC+  K+  ++++    LLE++  N G+Y++ S I+AN   W+D AK+R LM ++ 
Sbjct: 1111 AFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRR 1170

Query: 546  VSKTPGCSWIGIDD 559
            + K PG +WI +D+
Sbjct: 1171 LKKIPGWTWIEVDN 1184



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 241/436 (55%), Gaps = 31/436 (7%)

Query: 28  LSLLKKCPSTKTVQQIHTQ-----MLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +S L  C +   V+Q+H Q     ML N +   N L+      +  + A  LF  +   +
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVV-ANKLIYFYSYYRALDDAYGLFDGMCVRD 124

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             +++VM+ G       Y +    + ++ R G +PDN+T PFV  +C +L  L  G  +H
Sbjct: 125 SVSWSVMVGGFAKV-GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH 183

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V+K GLD D  V  +L+ MY +C +++ AR +FD+++ERDLV+W  MI GY++ G A 
Sbjct: 184 HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 243

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E++ LF +MREE  +PD++ +V+V+ +C  LG +   + ++ ++ + K  L+  +G+A+I
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI 303

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG +  AR +FD M  K+V++W+AMI AY  +G   +A+ LF  M  +G+ PDKI
Sbjct: 304 DMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKI 363

Query: 323 TLIGVLSACASIGALDLG------KWVDKYASQRGLRH-----DIF--CGSIDDALKVFE 369
           TL  +L AC+  G ++ G       W D Y+ +  ++H     D+    G +D+ALK+ +
Sbjct: 364 TLASLLYACSHAGLVEEGLRFFSSMWED-YSVRTDVKHYTCVVDLLGRAGRLDEALKLIK 422

Query: 370 DMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSK---EGGAARPNDVTFIGVLSACVH 425
            M +  +E  W A + A     R H+ ++L E+ +    E  +  P     +  + A  +
Sbjct: 423 SMTIEKDEGLWGAFLGAC----RTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYA--N 476

Query: 426 AGLVDEGRRLFDLMSS 441
           AG  ++  ++ DLMS 
Sbjct: 477 AGRWEDVAKIRDLMSQ 492



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/428 (32%), Positives = 237/428 (55%), Gaps = 28/428 (6%)

Query: 35   PSTKT-VQQIHTQ-----MLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNV 88
            P+  T V+Q+H Q     ML N I   N L+      +  + A  LF  +   +  +++V
Sbjct: 748  PTNLTQVRQVHXQASVHGMLQNLIV-ANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSV 806

Query: 89   MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
            M+ G       Y +    + ++ R G +PDN+T PFV  +C +L  L  G  +H  V+K 
Sbjct: 807  MVGGFAKV-GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 865

Query: 149  GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
            GLD D  V  +L+ MY +C +++ AR +FD++ ERDLV+W  MI GY++ G A E++ LF
Sbjct: 866  GLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLF 925

Query: 209  GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             +MREE  +PD++ +V+V+ +C  LG +   + ++ ++ + K  L+  +G+A+IDM+ KC
Sbjct: 926  DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKC 985

Query: 269  GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
            G +  AR +FD M  K+V++W+AMI AY  +G   +A+ LF  M  +G+ P+KITL+ +L
Sbjct: 986  GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLL 1045

Query: 329  SACASIGALDLG------KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPV-T 374
             AC+  G ++ G       W D Y+ +  ++H     D+    G +D+ALK+   M    
Sbjct: 1046 YACSHAGLVEEGLRFFSXMWED-YSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEK 1104

Query: 375  NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGLVDEGR 433
            +E  W A + A     R H+ + L E+ +      +P N   +I + +   +AG  ++  
Sbjct: 1105 DEGLWGAFLGAC----RTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 1160

Query: 434  RLFDLMSS 441
            ++ DLMS 
Sbjct: 1161 KIRDLMSQ 1168


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 182/570 (31%), Positives = 291/570 (51%), Gaps = 43/570 (7%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L+ C +   ++   Q+H   L +       +    +D+     +   A +LF +    
Sbjct: 244 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENL 303

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++N MI G +     +  +L L++++   GL  D  +   VF +CA +  L+ G+ +
Sbjct: 304 NRQSYNAMITGYSQEEHGFK-ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           +    K  L  D  V+++ I MY +C  L  A +VFDE+R RD VSWN++I+ + + G  
Sbjct: 363 YDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKG 422

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            E + LF  M      PDE T  SVL +C   G L  G  +   +VK+ M  N  +G +L
Sbjct: 423 YETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSL 481

Query: 262 IDMYGKCGALVPARRV----------------FDAMVNKDV----VTWNAMITAYAQNGL 301
           IDMY KCG +  A ++                 + M NK +    V+WN++I+ Y     
Sbjct: 482 IDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 541

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           S +A MLF RM   G+ PDK T   VL  CA++ +  LGK +     ++ L+ D++    
Sbjct: 542 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISST 601

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG + D+  +FE     + V+WNAMI   A +G+  EA+ LFERM  E    +
Sbjct: 602 LVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILEN--IK 659

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTFI +L AC H GL+D+G   F +M   +GL P+  HYS MVD+  ++G +  A +
Sbjct: 660 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 719

Query: 471 FVERMPEKVDEIVLGALLGACQ-KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
            +  MP + D+++   LLG C   + N +V++     LL ++  +S  Y + S ++A+  
Sbjct: 720 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 779

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           MW+  + +R  MR   + K PGCSW+ + D
Sbjct: 780 MWEKVSDLRRNMRGFKLKKEPGCSWVELKD 809



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 233/485 (48%), Gaps = 49/485 (10%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGL--- 93
           +Q H  M+++  +   F+L  ++ +    +DF  AS++F ++   +  ++N MI G    
Sbjct: 26  KQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMINGYAKS 85

Query: 94  -----------------TTAWQ----------KYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
                              +W           +   S++++  M R G + D  T+  + 
Sbjct: 86  NNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIIL 145

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             C+ L   + G+ +H  V ++G D D   + +L+ MYA+  +   + +VF  I E++ V
Sbjct: 146 KVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV 205

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SW+++I+G  +      A++ F  M++      +    SVL SC  L +L LG  +    
Sbjct: 206 SWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHA 265

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K+    +  + +A +DMY KC  +  A+ +FD   N +  ++NAMIT Y+Q     +A+
Sbjct: 266 LKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKAL 325

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
           +LF+R+  +G+  D+I+L GV  ACA +  L  G  +   A +  L  D+          
Sbjct: 326 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMY 385

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             C ++ +A +VF++M   + VSWNA+I+A   NG+ +E L LF  M +      P++ T
Sbjct: 386 GKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR--SRIEPDEFT 443

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F  VL AC   G +  G  +   +  S G+   S     ++D+Y++ G + EA     R 
Sbjct: 444 FGSVLKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF 501

Query: 476 PEKVD 480
            ++ +
Sbjct: 502 FQRTN 506



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 237/511 (46%), Gaps = 42/511 (8%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K F  +  +F  I   N  +++ +I G        S +LK + +M+++        Y  V
Sbjct: 187 KRFVESLRVFQGIPEKNSVSWSAIIAGCVQN-NLLSLALKFFKEMQKVNAGVSQSIYASV 245

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             SCA L  L  G  +H+   K     D  V  + + MYA+C  +  A+ +FD+    + 
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNR 305

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            S+N+MI+GYS+  +  +A+ LF R+       DEI+L  V  +C  +  L  G  +   
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDL 365

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K+ + L+  + +A IDMYGKC AL  A RVFD M  +D V+WNA+I A+ QNG   E 
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 425

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DI 356
           + LF  M  + + PD+ T   VL AC   G+L  G  +     + G+           D+
Sbjct: 426 LFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 484

Query: 357 F--CGSIDDALKV----FEDMPVTNE----------------VSWNAMISALAFNGRAHE 394
           +  CG I++A K+    F+   V+                  VSWN++IS      ++ +
Sbjct: 485 YSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSED 544

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-- 452
           A +LF RM + G    P+  T+  VL  C +      G+++    +       +S+ Y  
Sbjct: 545 AQMLFTRMMEMG--ITPDKFTYATVLDTCANLASAGLGKQIH---AQVIKKELQSDVYIS 599

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE 511
           S +VD+Y++ G L ++    E+   + D +   A++ G     K  +  Q   +++LE  
Sbjct: 600 STLVDMYSKCGDLHDSRLMFEKSLRR-DFVTWNAMICGYAHHGKGEEAIQLFERMILENI 658

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
             N   ++   +  A++ + D   +   +M+
Sbjct: 659 KPNHVTFISILRACAHMGLIDKGLEYFYMMK 689



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 169/348 (48%), Gaps = 17/348 (4%)

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           + +I  YA+   +  A   F+ +  RD+VSWNSM+SGY + G   +++E+F  M      
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            D  T   +L  C  L D  LG  + G VV+   D +    SAL+DMY K    V + RV
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F  +  K+ V+W+A+I    QN L + A+  F  M+       +     VL +CA++  L
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSEL 255

Query: 338 DLGKWVDKYASQ---------RGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
            LG  +  +A +         R    D++  C ++ DA  +F+     N  S+NAMI+  
Sbjct: 256 RLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGY 315

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGL 445
           +      +ALLLF R+   G     ++++  GV  AC     + EG +++DL + SS  L
Sbjct: 316 SQEEHGFKALLLFHRLMSSGLGF--DEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSL 373

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
                + +  +D+Y +   L+EA+   + M  + D +   A++ A ++
Sbjct: 374 DVCVANAA--IDMYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQ 418


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 298/555 (53%), Gaps = 32/555 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISR 80
           E+ L  L KC +   V+Q+H Q++   + +   +  ++I      +  N A  +F+Q+  
Sbjct: 20  EERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQE 79

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN +  N +IR      Q Y  +  ++ +M+R GL  DNFTYPF+  +C+ L  L     
Sbjct: 80  PNVHLCNSLIRAHALNSQPY-QAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKM 138

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLD--SARKVFDEIRERDLVSWNSMISGYSKM 198
           +H+ + K+GL  D +V ++LI  Y+RCG L    A K+F+++ ERD VSWNSM+ G  K 
Sbjct: 139 MHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKA 198

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYM 257
           G  ++A +LF  M + + +    T++     C ++           F +  KM + N   
Sbjct: 199 GELRDARKLFDEMPQRDLISWN-TMLDGYARCREMS--------RAFELFEKMPERNTVS 249

Query: 258 GSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            S ++  Y K G +  AR +FD M    K+VVTW  +I  YA+ GL  EA  L ++M  +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVAS 309

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDA 364
           G+  D    I +L+ACA  G L LG        +  L           D++  CGS+  A
Sbjct: 310 GLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKA 369

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF DMP  + VSWN M+  L  +G   EA+ LF RM KEG    P+ VTFI VL +C 
Sbjct: 370 FDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEG--IWPDKVTFIAVLCSCN 427

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGL+DEG   F  M   + L+PK EHY C+VDL  R G L EA   V+ MP + + ++ 
Sbjct: 428 HAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIW 487

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           GALLGAC+     D+++ V+  L++++ S+ GNY + S I+A  + W+  A +R+ M+  
Sbjct: 488 GALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSM 547

Query: 545 GVSKTPGCSWIGIDD 559
           GV K  G S + ++D
Sbjct: 548 GVEKPSGASSVELED 562


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 276/497 (55%), Gaps = 16/497 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++   +  ++N MI G +     Y  S+KL+ +M     KPD  T   +  +C +L 
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQV-GLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 389

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  VH  +   G + D   S+ LI MYA+CG L ++++VF  ++ +D VSWNSMI+
Sbjct: 390 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 449

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y + G   EA++LF +M + +  PD +T V +L     LGDL LGK +   + K   + 
Sbjct: 450 VYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNS 508

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + + L+DMY KCG +  + +VF+ M  +D++TWN +I +   +   N  + + +RM+
Sbjct: 509 NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 568

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSID 362
             GV PD  T++ +L  C+ + A   GK +     + GL  D+            CGS+ 
Sbjct: 569 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 628

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           ++ +VF+ M   + V+W A+ISA    G   +A+  F  M  E     P+ V F+ ++ A
Sbjct: 629 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM--EAAGIVPDHVAFVAIIFA 686

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H+GLV+EG   F  M   + + P+ EHY+C+VDL +R+  L +A DF+  MP K D  
Sbjct: 687 CSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSS 746

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL AC+   +T+++QRV + ++E+   ++G YV+ S ++A L  WD    +R  ++
Sbjct: 747 IWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIK 806

Query: 543 EKGVSKTPGCSWIGIDD 559
            +G+ K PGCSW+ I +
Sbjct: 807 ARGLKKDPGCSWMEIQN 823



 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/435 (34%), Positives = 234/435 (53%), Gaps = 20/435 (4%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N Y +N +IR LT     +S +L LY + +R+ L+PD +T+P V  +CA LL      S+
Sbjct: 138 NVYXWNSIIRALTHN-GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSI 196

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V  +G   D ++ ++LI MY R   LD ARKVF+E+  RD+VSWNS+ISGY+  GY 
Sbjct: 197 HDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 256

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA+E++ R R    +PD  T+ SVL +CG LG +  G  + G + K  +  +  + + L
Sbjct: 257 NEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 316

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY K   L+  RR+FD MV +D V+WN MI  Y+Q GL  E+I LF  M      PD 
Sbjct: 317 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDL 375

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           +T+  +L AC  +G L+ GK+V  Y    G   D             CG++  + +VF  
Sbjct: 376 LTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSG 435

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWN+MI+    NG   EA+ LF+ M  +    +P+ VT++ +LS     G + 
Sbjct: 436 MKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD---VKPDSVTYVMLLSMSTQLGDLX 492

Query: 431 EGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            G+ L  DL  +  G        + +VD+YA+ G + ++    E M  + D I    ++ 
Sbjct: 493 LGKELHCDL--AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIA 549

Query: 490 ACQKQKNTDVSQRVM 504
           +C   ++ ++  R++
Sbjct: 550 SCVHSEDCNLGLRMI 564



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 152/371 (40%), Gaps = 103/371 (27%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           +  ++KL+  MK   +KPD+ TY  +      L  L  G  +H  + K+G + +  VS++
Sbjct: 457 FDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNT 515

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           L+ MYA+CG++  + KVF+ ++ RD+++WN++I+           + +  RMR E   PD
Sbjct: 516 LVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 575

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             T++S+L  C  L     GK + G + K  ++ +  +G+ LI+MY KCG+L  + +VF 
Sbjct: 576 MATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK 635

Query: 280 AMVNKDVVTWNAM-----------------------------------ITAYAQNGLSNE 304
            M  KDVVTW A+                                   I A + +GL  E
Sbjct: 636 LMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEE 695

Query: 305 AIMLFNRMK-----------YAGV----------------------NPDKITLIGVLSAC 331
            +  F+RMK           YA V                       PD      +LSAC
Sbjct: 696 GLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSAC 755

Query: 332 ASIGALD-----------------------------LGKW-----VDKYASQRGLRHDIF 357
              G  +                             LGKW     + K    RGL+ D  
Sbjct: 756 RMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPG 815

Query: 358 CGSIDDALKVF 368
           C  ++   KV+
Sbjct: 816 CSWMEIQNKVY 826



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 69/315 (21%)

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
           A  + +V  WN++I A   NGL +EA+ L++  +   + PD  T   V++ACA +   ++
Sbjct: 133 ASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEM 192

Query: 340 GKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAF 388
            K +       G   D++ G+           +D A KVFE+MP+ + VSWN++IS    
Sbjct: 193 AKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 252

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE----------------- 431
           NG  +EAL ++ R    G    P+  T   VL AC   G V+E                 
Sbjct: 253 NGYWNEALEIYYRFRNLG--VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 310

Query: 432 ------------------GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD-FV 472
                             GRR+FD M     ++  +  ++ M+  Y++ G   E+   F+
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDKM-----VLRDAVSWNTMICGYSQVGLYEESIKLFM 365

Query: 473 ERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLL----EIESSNS----------GN 517
           E + + K D + + ++L AC    + +  + V   ++    E +++ S          GN
Sbjct: 366 EMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 425

Query: 518 YVISSKIFANLKMWD 532
            + S ++F+ +K  D
Sbjct: 426 LLASQEVFSGMKCKD 440


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 175/554 (31%), Positives = 302/554 (54%), Gaps = 24/554 (4%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQIS 79
            +S+L  C +  ++   +Q+H   + N +    F+   ++D    L   + A  LF  I 
Sbjct: 431 FVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIP 490

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +  ++N +I GL    ++   ++ +  +MK  G+ PD  ++     +C+N+ A   G 
Sbjct: 491 GKDSVSWNALIVGLAHN-EEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGK 549

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H +  K  +  +  V  SLI +Y++ G ++S+RKV   +    +V  N++I+G  +  
Sbjct: 550 QIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNN 609

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMG 258
              EA+ELF ++ ++ F P   T  S+L  C      V+GK V  + +K+ + + +  +G
Sbjct: 610 REDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLG 669

Query: 259 SALIDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +L+ +Y KC  L  A ++   + + K++V W A I+ YAQNG S++++++F RM+   V
Sbjct: 670 ISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDV 729

Query: 318 NPDKITLIGVLSACASIGALDLGKWVD---------KYASQRGLRHDIF--CGSIDDALK 366
             D+ T   VL AC+ I AL  GK +           Y +      D++  CG +  + +
Sbjct: 730 RSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFE 789

Query: 367 VFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           +F+++    N + WN+MI   A NG A+EALLLF++M +     +P++VT +GVL AC H
Sbjct: 790 IFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQES--QLKPDEVTLLGVLIACSH 847

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AGL+ EGR LFD MS  +G++P+ +HY+C++DL  R GHL EA + ++++P + D ++  
Sbjct: 848 AGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVIWA 907

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
             L ACQ  K+ +  +   + L+E+E   S  YV  S + A    W ++   R  MREKG
Sbjct: 908 TFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMREKG 967

Query: 546 VSKTPGCSWIGIDD 559
           V K PGCSWI + +
Sbjct: 968 VMKFPGCSWITVGN 981



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 203/365 (55%), Gaps = 14/365 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  L  +I  P+  A+N +I   + +  + S    LY  MKR GL P   T+  +  + A
Sbjct: 280 ARTLLKRIQMPSTVAWNAVISSYSQSGLE-SEVFGLYKDMKRQGLMPTRSTFASMLSAAA 338

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           ++ A + G  +H++  K GLD +  V  SLI +Y + G +  A+KVFD   E+++V WN+
Sbjct: 339 SMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNA 398

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M+ G+ +    +E +++F  MR  +   D+ T VSVLG+C +L  L +G+ V    +KN 
Sbjct: 399 MLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNS 458

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           MD + ++ +A++DMY K GA+  A+ +F  +  KD V+WNA+I   A N    EA+ +  
Sbjct: 459 MDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLK 518

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVD----KY--ASQRGLRH---DIFC--G 359
           RMK  G+ PD+++    ++AC++I A + GK +     KY   S   +     D++   G
Sbjct: 519 RMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFG 578

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            ++ + KV   +  ++ V  NA+I+ L  N R  EA+ LF+++ K+G   +P++ TF  +
Sbjct: 579 DVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDG--FKPSNFTFASI 636

Query: 420 LSACV 424
           LS C 
Sbjct: 637 LSGCT 641



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 212/452 (46%), Gaps = 54/452 (11%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK----DFNYASLLFHQISRPN 82
           +LS   +  + +  +Q+H  +L +      F    ++D+     +   A  +F  I+ P+
Sbjct: 166 VLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPD 225

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              +  MI G      +Y  +L L+ +M+++G  PD  TY                    
Sbjct: 226 TICWASMIAGYHRVG-RYQQALALFSRMEKMGSAPDQVTYV------------------- 265

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
                           ++I+  A  G+L  AR +   I+    V+WN++IS YS+ G   
Sbjct: 266 ----------------TIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLES 309

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E   L+  M+ +  +P   T  S+L +   +     G+ +    VK+ +D N ++GS+LI
Sbjct: 310 EVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLI 369

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           ++Y K G +  A++VFD    K++V WNAM+  + QN L  E I +F  M+ A +  D  
Sbjct: 370 NLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDF 429

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDM 371
           T + VL AC ++ +LD+G+ V     +  +  D+F            G+ID A  +F  +
Sbjct: 430 TFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLI 489

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  + VSWNA+I  LA N    EA+ + +RM   G A  P++V+F   ++AC +    + 
Sbjct: 490 PGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIA--PDEVSFATAINACSNIRATET 547

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           G+++    S  + +       S ++DLY++ G
Sbjct: 548 GKQIH-CASIKYNVCSNHAVGSSLIDLYSKFG 578



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 165/341 (48%), Gaps = 30/341 (8%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGYSKM 198
           +H+ V ++GL     +  +L+ +Y R G++  A +             + +S++S +++ 
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARS 137

Query: 199 GYAKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G  ++ ++ F R+R      PD+  L  VL +C  LG L  G+ V   V+K+    + + 
Sbjct: 138 GSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFC 197

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + L+DMY KC  +  ARRVFD +   D + W +MI  Y + G   +A+ LF+RM+  G 
Sbjct: 198 QAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGS 257

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377
            PD++T + ++S  AS+G L                         DA  + + + + + V
Sbjct: 258 APDQVTYVTIISTLASMGRL------------------------SDARTLLKRIQMPSTV 293

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           +WNA+IS+ + +G   E   L++ M ++G    P   TF  +LSA       DEG+++  
Sbjct: 294 AWNAVISSYSQSGLESEVFGLYKDMKRQG--LMPTRSTFASMLSAAASMTAFDEGQQIH- 350

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +   GL       S +++LY + G +S+A    +   EK
Sbjct: 351 AAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEK 391


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 249/441 (56%), Gaps = 13/441 (2%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA   AL  G  +H  +    LD    +S+ L+ MY +CG L  A++VFD ++ +++ SW
Sbjct: 51  CAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSW 110

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
             +++G+ + G   EA++LF RM +E  LPD + L+  + SCG    L  G+ +      
Sbjct: 111 TMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAAS 170

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             MD +    +A+I+MYGKCG++  A  VF  M  K+V++W+ MI A+ QN L++EA++ 
Sbjct: 171 CGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLF 230

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F  M+  G+  D+IT + VL A  S+GAL+LGK +       GL   I            
Sbjct: 231 FKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGK 290

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CGS DDA  VF+ M   N VSWNAM++A   NGR+ EAL LF+ M  EG   RPND+TF+
Sbjct: 291 CGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEG--VRPNDITFV 348

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +L  C H+G   +    F  M   FG+ P+  H+ C++D+  R+G L EA + ++ MP 
Sbjct: 349 TILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPV 408

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
             D ++  +LL AC   K+ D + R  +   + E   +  Y++ S ++A LK WD++AK+
Sbjct: 409 PADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKV 468

Query: 538 RALMREKGVSKTPGCSWIGID 558
           R  M + GV K  G SWI ID
Sbjct: 469 RKRMEQAGVRKQAGRSWIEID 489



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 208/406 (51%), Gaps = 34/406 (8%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L  L+++C   K +++   IH  M    + +P FL   ++D+         A  +F  + 
Sbjct: 44  LEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQ 103

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N +++ +++ G   + +    +++L+++M + G  PD         SC    AL+ G 
Sbjct: 104 HKNVFSWTMLMAGFVQSGRGV-EAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGR 162

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +HS+    G+D D   ++++I MY +CG +  A  VF  + E++++SW++MI+ + +  
Sbjct: 163 EIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNE 222

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A EA+  F  M++E    D IT VSVL +   +G L LGK +   +V   +D +  +G+
Sbjct: 223 LADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGN 282

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            L++MYGKCG+   AR VFD+MV K+VV+WNAM+ AY QNG S EA+ LF+ M   GV P
Sbjct: 283 TLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRP 342

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT-NEVS 378
           + IT + +L  C+  G                     F  ++   +++ +D  +T  EV 
Sbjct: 343 NDITFVTILYCCSHSGK--------------------FKDAVSHFVEMRQDFGITPREVH 382

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           +  +I  L  +G+  EA  L + M     A     V +  +L ACV
Sbjct: 383 FGCLIDMLGRSGKLEEAEELIQAMPVPADA-----VLWTSLLCACV 423


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 168/480 (35%), Positives = 279/480 (58%), Gaps = 24/480 (5%)

Query: 98  QKYSHSLKLYYQMKR-------LGLKPDNFTYPFV---FISCANLLALNHGVSVHSSVFK 147
           QKY   L  ++  KR         L P    Y  V     + ++  ++++  ++H+ V K
Sbjct: 31  QKYPFLLCKFFISKRRICNANLFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIK 90

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
                D  +   L++MY + G  + A+++FDE+  +DLVSWNS++SG S  GY    +  
Sbjct: 91  SLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNA 150

Query: 208 FGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           F RMR E    P+E+TL+SV+ +C D+G L  GK + G VVK  M     + ++LI+MYG
Sbjct: 151 FCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYG 210

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           K G L  A ++F+ M  + +V+WN+M+  +  NG + + + LFN MK AG+NPD+ T++ 
Sbjct: 211 KLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVA 270

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTN 375
           +L AC   G     + +  Y  + G   DI             G ++ +  +FE++   +
Sbjct: 271 LLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRD 330

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            ++W AM++  A +    EA+ LF+ M KEG     + VTF  +LSAC H+GLV+EG++ 
Sbjct: 331 RIAWTAMLAGYAVHACGREAIKLFDLMVKEG--VEVDHVTFTHLLSACSHSGLVEEGKKY 388

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           F++MS  + + P+ +HYSCMVDL  R+G L +A++ ++ MP +    V GALLGAC+   
Sbjct: 389 FEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYG 448

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           N ++ + V + LL ++ S+  NY++ S I++   +W D++K+RALM+E+ +++ PGCS+I
Sbjct: 449 NVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFI 508



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 224/466 (48%), Gaps = 46/466 (9%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK-DFNY---ASLLFHQISR 80
           + L+  +  C S      IH +++ +      F+  R++ +     Y   A  LF ++  
Sbjct: 66  QSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPN 125

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHGV 139
            +  ++N ++ GL+         L  + +M+   G +P+  T   V  +CA++ AL+ G 
Sbjct: 126 KDLVSWNSLMSGLS-GRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGK 184

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H  V K+G+     V +SLI MY + G LD+A ++F+E+  R LVSWNSM+  ++  G
Sbjct: 185 SLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNG 244

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           YA++ ++LF  M+     PD+ T+V++L +C D G     + +  ++ +   + +  + +
Sbjct: 245 YAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 304

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+++Y K G L  +  +F+ + ++D + W AM+  YA +    EAI LF+ M   GV  
Sbjct: 305 ALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 364

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS- 378
           D +T   +LSAC+  G ++ GK                        K FE M     V  
Sbjct: 365 DHVTFTHLLSACSHSGLVEEGK------------------------KYFEIMSEVYRVEP 400

Query: 379 ----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
               ++ M+  L  +GR  +A  L + M  E     P+   +  +L AC   G V+ G+ 
Sbjct: 401 RLDHYSCMVDLLGRSGRLEDAYELIKSMPME-----PSSGVWGALLGACRVYGNVELGKE 455

Query: 435 LFDLMSSSFGLIPKSEH--YSCMVDLYARAGHLSEAWDFVERMPEK 478
           + + + S    +  S+H  Y  + ++Y+ AG   +A      M E+
Sbjct: 456 VAEQLLS----LDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKER 497


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 176/490 (35%), Positives = 264/490 (53%), Gaps = 23/490 (4%)

Query: 91  RGLTTAWQKYSHSLKLYYQMKRL----------GLKPDNFTYPFVFISCANLLALNHGVS 140
           R L+T      H L ++    RL          GL  +   Y  V   C    A+  G  
Sbjct: 20  RLLSTFPSNSHHVLNIHIHDTRLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQR 79

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH+ + K       ++   LI  Y +C  L  AR VFD + ER++VSW +MIS YS+ GY
Sbjct: 80  VHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGY 139

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A +A+ LF +M      P+E T  +VL SC      VLG+ +   ++K   + + Y+GS+
Sbjct: 140 ASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSS 199

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+DMY K G +  AR +F  +  +DVV+  A+I+ YAQ GL  EA+ LF R++  G+  +
Sbjct: 200 LLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSN 259

Query: 321 KITLIGVLSACASIGALDLGKWVDKY------ASQRGLRHDIF-----CGSIDDALKVFE 369
            +T   VL+A + + ALD GK V  +       S   L++ +      CG++  A ++F+
Sbjct: 260 YVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFD 319

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +     +SWNAM+   + +G   E L LF  M  E    +P+ VT + VLS C H GL 
Sbjct: 320 TLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDEN-KVKPDSVTVLAVLSGCSHGGLE 378

Query: 430 DEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           D+G  +F D+ S    + P S+HY C+VD+  RAG +  A++FV++MP +    + G LL
Sbjct: 379 DKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLL 438

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC    N D+ + V   LL+IE  N+GNYVI S ++A+   W+D   +R LM +K V+K
Sbjct: 439 GACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTK 498

Query: 549 TPGCSWIGID 558
            PG SWI +D
Sbjct: 499 EPGRSWIELD 508



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 236/505 (46%), Gaps = 60/505 (11%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII-------DLKDFNYASLLFHQI 78
           ++L +C   + +   Q++H  M+        +L  R+I        L+D   A  +F  +
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRD---ARHVFDVM 119

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
              N  ++  MI   +      S +L L+ QM R G +P+ FT+  V  SC        G
Sbjct: 120 PERNVVSWTAMISAYSQRGYA-SQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLG 178

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +HS + K+  +   +V  SL+ MYA+ GK+  AR +F  + ERD+VS  ++ISGY+++
Sbjct: 179 RQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQL 238

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G  +EA+ELF R++ E    + +T  SVL +   L  L  GK V   ++++++     + 
Sbjct: 239 GLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQ 298

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGV 317
           ++LIDMY KCG L  ARR+FD +  + V++WNAM+  Y+++G   E + LFN M     V
Sbjct: 299 NSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKV 358

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377
            PD +T++ VLS C+  G  D G              DIF       + V  D       
Sbjct: 359 KPDSVTVLAVLSGCSHGGLEDKGM-------------DIFYDMTSGKISVQPDSK----- 400

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GR 433
            +  ++  L   GR   A    ++M  E     P+   +  +L AC VH+ L + E  G 
Sbjct: 401 HYGCVVDMLGRAGRVEAAFEFVKKMPFE-----PSAAIWGCLLGACSVHSNLDIGEFVGH 455

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK------------VDE 481
           +L  +   + G      +Y  + +LYA AG   +       M +K            +D+
Sbjct: 456 QLLQIEPENAG------NYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQ 509

Query: 482 IVLGALLGACQKQKNTDVSQRVMQL 506
           ++       C   +  +VS +V +L
Sbjct: 510 VLHTFHASDCSHPRREEVSAKVQEL 534


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 179/507 (35%), Positives = 272/507 (53%), Gaps = 21/507 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC- 129
           A LLF  +   +   +N+M++G      +   + +L+ +  R GL+PD F+   +   C 
Sbjct: 237 ARLLFDWMRERDVVLWNMMLKGYVQLGLE-KEAFQLFSEFHRSGLRPDEFSVQLILNGCL 295

Query: 130 -ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            A    L  G  VH    K GLD D  V++SL+ MY++ G    AR+VF++++  DL+SW
Sbjct: 296 WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISW 355

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL-----GSCGDLGDLVLGKWVE 243
           NSMIS  ++    +E+V LF  +  E   PD  TL S+       +CG L  L  GK + 
Sbjct: 356 NSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIH 415

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +K   D + ++ S ++DMY KCG +V A  VF+ +   D V W +MI+    NG  +
Sbjct: 416 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 475

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
           +A+ +++RM+ + V PD+ T   ++ A + + AL+ G+ +     +     D F      
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 535

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG+I+DA ++F+ M V N   WNAM+  LA +G A EA+ LF+ M   G    P+
Sbjct: 536 DMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG--IEPD 593

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            V+FIG+LSAC HAGL  E       M + +G+ P+ EHYSC+VD   RAG + EA   +
Sbjct: 594 RVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVI 653

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           E MP K    +  ALLGAC+ Q + +  +RV   L  +E  +S  YV+ S I+A    WD
Sbjct: 654 ETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWD 713

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           D    R +M+ K V K PG SWI + +
Sbjct: 714 DVTDARKMMKRKNVKKDPGFSWIDVKN 740



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 199/400 (49%), Gaps = 30/400 (7%)

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
           IS  NLL    G   H+ +   G   D  +S++L+TMY++CG L SAR+VFD   ERDLV
Sbjct: 88  ISTHNLLL---GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLV 144

Query: 187 SWNSMISGY-----SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +WN+++  Y     S  G A+E + LF  +R        +TL  VL  C + G L   + 
Sbjct: 145 TWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEG 204

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V G+ +K  ++ + ++  AL+++Y KCG +  AR +FD M  +DVV WN M+  Y Q GL
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSAC--ASIGALDLGKWVDKYASQRGLRHDIFC- 358
             EA  LF+    +G+ PD+ ++  +L+ C  A    L+LGK V   A + GL  D+   
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVA 324

Query: 359 ----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                     G    A +VF DM   + +SWN+MIS+ A +    E++ LF  +  EG  
Sbjct: 325 NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG-- 382

Query: 409 ARPNDVTFIGVL-----SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +P+  T   +       AC    L+D+G+++    +   G        S ++D+Y + G
Sbjct: 383 LKPDHFTLASITLATAAKACGCLVLLDQGKQIH-AHAIKAGFDSDLHVNSGILDMYIKCG 441

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
            +  A   V       D++   +++  C    N D + R+
Sbjct: 442 DMVNA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRI 480



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 203/420 (48%), Gaps = 44/420 (10%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS- 128
           +A  +F+ +   +  ++N MI     +  +   S+ L+  +   GLKPD+FT   + ++ 
Sbjct: 339 FAREVFNDMKHLDLISWNSMISSCAQSSLE-EESVNLFIDLLHEGLKPDHFTLASITLAT 397

Query: 129 ----CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
               C  L+ L+ G  +H+   K G D D HV+  ++ MY +CG + +A  VF+ I   D
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 457

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
            V+W SMISG    G   +A+ ++ RMR+   +PDE T  +++ +   +  L  G+ +  
Sbjct: 458 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 517

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            V+K     + ++G++L+DMY KCG +  A R+F  M  +++  WNAM+   AQ+G + E
Sbjct: 518 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 577

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364
           A+ LF  MK  G+ PD+++ IG+LSAC+  G                           +A
Sbjct: 578 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGL------------------------TSEA 613

Query: 365 LKVFEDMP----VTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +    MP    +  E+  ++ ++ AL   G   EA  + E M  +  A+         +
Sbjct: 614 YEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINR-----AL 668

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L AC   G V+ G+R   + +  F L P  S  Y  + ++YA A    +  D  + M  K
Sbjct: 669 LGACRIQGDVETGKR---VAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 725


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 172/496 (34%), Positives = 278/496 (56%), Gaps = 14/496 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANL 132
           +F +  RP+   +  M+ G          +L L+ QM  +  +  D  T   V  +CA L
Sbjct: 161 VFEEFQRPDTVLWTSMVTGYQQN-NDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQL 219

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           L +  G  VH  V +   D D  + +SL+ +YA+ G    A  +F ++ E+D++SW++MI
Sbjct: 220 LNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMI 279

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           + Y+    A EA+ LF  M E+ F P+ +T+VS L +C    +L  GK +    V    +
Sbjct: 280 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFE 339

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           L+F + +ALIDMY KC     A  +F  +  KDVV+W A+++ YAQNG++ +++ +F  M
Sbjct: 340 LDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM 399

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
              G+ PD + ++ +L+A + +G       +  Y  + G   ++F           CGS+
Sbjct: 400 LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSL 459

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            DA+K+F+ M V + V W++MI+A   +GR  EAL +F++M K     RPN+VTF+ +LS
Sbjct: 460 GDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKN-STVRPNNVTFLSILS 518

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAGLV+EG ++FD M   + L P SEH+  MVDL  R G L +A D + RMP     
Sbjct: 519 ACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGP 578

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
            V GALLGAC+   N ++ +   + L  ++ S++G Y++ S I+A    WD+ A++R  +
Sbjct: 579 HVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRI 638

Query: 542 REKGVSKTPGCSWIGI 557
           +E+G+ K  G S + +
Sbjct: 639 KERGLKKMFGQSMVEV 654



 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 264/490 (53%), Gaps = 35/490 (7%)

Query: 97   WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            WQ+   +   Y   K +G  P   T     ISC + L        H+ +F  GL  D  +
Sbjct: 708  WQRIKATESKY---KTIGSAPGTDT-----ISCFSCLK-----KTHAKIFAYGLQYDSRI 754

Query: 157  SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                  MY    ++D+A  VF++I       WN MI G++  G    ++EL+ +M E+  
Sbjct: 755  LTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGL 814

Query: 217  LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             PD+      L SC  L DL  GK +   +V      + ++ +AL+DMY KCG +  AR 
Sbjct: 815  KPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARL 874

Query: 277  VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
            VFD M  +D+V+W +MI+ YA NG ++E +  F+ M+ +GV P++++++ VL AC ++GA
Sbjct: 875  VFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGA 934

Query: 337  LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
            L  G+W   Y  Q G   DI            CGS+D A  +F++    + V W+AMI++
Sbjct: 935  LRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIAS 994

Query: 386  LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
               +G   +A+ LF++M K G   RP+ VTF  VLSAC H+GL++EG+  F LM+  F +
Sbjct: 995  YGIHGHGRKAIDLFDQMVKAG--VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVI 1052

Query: 446  IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
              K  +Y+CMVDL  RAG LSEA D +E MP + D  + G+LLGAC+   N D+++++  
Sbjct: 1053 ARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIAD 1112

Query: 506  LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI---------G 556
             L  ++  ++G +V+ S I+A    W++  K+R +M  +G +K  G S +         G
Sbjct: 1113 HLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFG 1172

Query: 557  IDDPKQSNWK 566
            + D     W+
Sbjct: 1173 VGDRSHPQWE 1182



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 218/392 (55%), Gaps = 28/392 (7%)

Query: 35   PSTKTV------QQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQISRPNEY 84
            P T T+      ++ H ++    +Q  + +L +     +     + AS++F  I  P  +
Sbjct: 725  PGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSF 784

Query: 85   AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
             +NVMIRG  T   ++  SL+LY +M   GLKPD F +PF   SCA L  L  G  +H  
Sbjct: 785  LWNVMIRGFATD-GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQH 843

Query: 145  VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
            +   G   D  V  +L+ MYA+CG +++AR VFD++  RDLVSW SMISGY+  GY  E 
Sbjct: 844  LVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSET 903

Query: 205  VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
            +  F  MR    +P+ ++++SVL +CG+LG L  G+W   +V++   + +  + +A++DM
Sbjct: 904  LGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM 963

Query: 265  YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
            Y KCG+L  AR +FD    KD+V W+AMI +Y  +G   +AI LF++M  AGV P  +T 
Sbjct: 964  YSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTF 1023

Query: 325  IGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMP 372
              VLSAC+  G L+ GK       +++   R L +     D+    G + +A+ + E+MP
Sbjct: 1024 TCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMP 1083

Query: 373  VTNEVS-WNAMISALAFNGRAHEALLLFERMS 403
            V  + S W +++ A     R H  L L E+++
Sbjct: 1084 VEPDASIWGSLLGAC----RIHNNLDLAEKIA 1111



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 247/485 (50%), Gaps = 23/485 (4%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           R+ L+ L + C + ++V Q+H+Q+    I    F   ++  L         A  +F +  
Sbjct: 4   RQVLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETP 63

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHG 138
            PN + +N  +R      +++  +L+L++ M    G  PDNFT P    +CA L  L  G
Sbjct: 64  HPNVHLWNSTLRSYCRE-KQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 139 VSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
             +H    K   +  D  V  +L+ +Y++CG++  A KVF+E +  D V W SM++GY +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 198 MGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
               +EA+ LF +M   +  + D +TLVSV+ +C  L ++  G  V G V++ + D +  
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + ++L+++Y K G    A  +F  M  KDV++W+ MI  YA N  +NEA+ LF+ M    
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDAL 365
             P+ +T++  L ACA    L+ GK + K A  +G   D           + C   D+A+
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAV 362

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +F+ +P  + VSW A++S  A NG A++++ +F  M  +G   +P+ V  + +L+A   
Sbjct: 363 DLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDG--IQPDAVAVVKILAASSE 420

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
            G+  +   L   +  S G        + +++LY++ G L +A    + M  + D ++  
Sbjct: 421 LGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWS 478

Query: 486 ALLGA 490
           +++ A
Sbjct: 479 SMIAA 483


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 168/437 (38%), Positives = 264/437 (60%), Gaps = 13/437 (2%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G++ H+ + ++GL  D   S+ L+ MY++CG ++SARK+FDE+  R LVSWN+M+  +++
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  ++A+ LF +M++E     E T+ SV+ +C     +   K + GF +K  +D N ++
Sbjct: 99  NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 158

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+D+Y KCG +  A  VF+ M  +  VTW++M+  Y QN L  EA++LF+R +  G+
Sbjct: 159 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 218

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
             ++ T+   LSACA+  AL  GK V   + + G+  +IF           CG I++A  
Sbjct: 219 EHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYT 278

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  +   N V WNA++S  + + R+ EA++ FE+M + G    PND+T+I VLSAC H 
Sbjct: 279 VFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGIC--PNDITYISVLSACSHL 336

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV++GR+ FDLM     + P   HYSCMVD+  RAG L EA DF++RMP      + G+
Sbjct: 337 GLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGS 396

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL +C+  +N ++++   + L EIE  N+GN+V+ S I+A    W++ A+ R L++E   
Sbjct: 397 LLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKA 456

Query: 547 SKTPGCSWIGIDDPKQS 563
            K  G SWI I     S
Sbjct: 457 KKERGKSWIEIKHKVHS 473



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 173/339 (51%), Gaps = 20/339 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +  ++N M+ G  T       +L L+ QM++ G     FT   V  +CA
Sbjct: 74  ARKLFDEMPVRSLVSWNTMV-GSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA 132

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               +     +H    K  LD +  V  +L+ +YA+CG +  A  VF+ + ER  V+W+S
Sbjct: 133 AKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSS 192

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M++GY +    +EA+ LF R +      ++ T+ S L +C     L+ GK V+    K  
Sbjct: 193 MVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG 252

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  N ++ S+LIDMY KCG +  A  VF ++  K+VV WNA+++ ++++  S EA++ F 
Sbjct: 253 IGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFE 312

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370
           +M+  G+ P+ IT I VLSAC+ +G ++ G+   KY               D  ++V   
Sbjct: 313 KMQQMGICPNDITYISVLSACSHLGLVEKGR---KY--------------FDLMIRVHNV 355

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
            P  N + ++ M+  L   G  HEA    +RM  +  A+
Sbjct: 356 SP--NVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATAS 392


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 174/462 (37%), Positives = 250/462 (54%), Gaps = 49/462 (10%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK--VFDEIRERDLVSWNSMISGYSKM 198
           VH+ + + GL +  +V   LI M  +      +    VF ++   +   W +MI GY+  
Sbjct: 61  VHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQ 120

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG-FVVKNKMDLNFYM 257
           G   E+   + RMR +   P   T  ++  +CG   ++ LGK V    ++      + Y+
Sbjct: 121 GLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYV 180

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWN--------------------------- 290
           G+++ID+Y KCG L  AR+VFD M  +DVV+W                            
Sbjct: 181 GNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDM 240

Query: 291 ----AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
               AM+T YAQNG   EA+  F +M+  G+  D++TL GV+SACA +GA+    W+   
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDI 300

Query: 347 ASQRGLRH-----------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
           A + G              D++  CGS D+A KVFE M   N  S+++MI   A +GRAH
Sbjct: 301 AERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAH 360

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            AL LF  M K     RPN VTFIG+LSAC HAGLV++GR+LF  M   FG+ P  +HY+
Sbjct: 361 SALQLFHDMLKT--EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYA 418

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVDL  RAG L EA D V+ MP + +  V GALLGAC+   N D++Q     L ++E +
Sbjct: 419 CMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPN 478

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             GNY++ S I+A+   W++ +K+R ++REKG  K PGCSW 
Sbjct: 479 GIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWF 520



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 254/525 (48%), Gaps = 82/525 (15%)

Query: 3   LRAKAYSRHLAFTEL-NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR 61
           L+ +     + F +L +   LL  +L+S+L  C     ++Q+H  ++ N + + +++L +
Sbjct: 20  LQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTK 79

Query: 62  II------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY-SHSLKLYYQMKRLG 114
           +I      D+   +Y  L+F Q++ PN + +  MIRG   A Q   S S   Y +M+R G
Sbjct: 80  LIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGY--ALQGLLSESTNFYTRMRRDG 137

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLDSA 173
           + P +FT+  +F +C   L ++ G  VH+    I G   D +V +S+I +Y +CG L  A
Sbjct: 138 VGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCA 197

Query: 174 RKVFDEIRERDLVS-------------------------------WNSMISGYSKMGYAK 202
           RKVFDE+ ERD+VS                               W +M++GY++ G  K
Sbjct: 198 RKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPK 257

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYMGSA 260
           EA+E F +M++     DE+TL  V+ +C  LG +    W+     ++      N  +GSA
Sbjct: 258 EALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSA 317

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KCG+   A +VF+ M  ++V ++++MI  YA +G ++ A+ LF+ M    + P+
Sbjct: 318 LIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPN 377

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
           K+T IG+LSAC+  G ++ G+ +  +A                  K F   P  +   + 
Sbjct: 378 KVTFIGILSACSHAGLVEQGRQL--FAKME---------------KFFGVAPSPDH--YA 418

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD----EGRRLF 436
            M+  L   G   EAL L + M  E     PN   +  +L AC   G  D        LF
Sbjct: 419 CMVDLLGRAGCLEEALDLVKTMPME-----PNGGVWGALLGACRIHGNPDIAQIAANELF 473

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
            L  +  G      +Y  + ++YA AG     W+ V ++ + + E
Sbjct: 474 KLEPNGIG------NYILLSNIYASAGR----WEEVSKLRKVIRE 508


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 289/544 (53%), Gaps = 23/544 (4%)

Query: 41  QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLT-- 94
           +Q+H  ++     + +   N +L   +   + + A  LF ++S  N  ++N++IRG+   
Sbjct: 70  KQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGC 129

Query: 95  -TAWQKYSHSLKLYYQMKRLGLK---PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
             A +  S+  + +   KR+ L+   PD+ T+  +F  C     ++ G  +H    K+GL
Sbjct: 130 GDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGL 189

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
           D D  V   L+ +YA+CG +++AR+VF  ++ RDLV WN MIS Y+     +EA  +F  
Sbjct: 190 DLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNL 249

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           MR +    DE T  ++L  C  L     GK V G +++   D +  + SALI+MY K   
Sbjct: 250 MRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNEN 309

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +V A R+FD MV ++VV WN +I  Y      NE + L   M   G +PD++T+   +S 
Sbjct: 310 IVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISL 369

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSW 379
           C  + A+        +A +   +  +            CGSI  A K F      + VSW
Sbjct: 370 CGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSW 429

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
            ++I+A AF+G A EA  +FE+M   G    P+ ++F+GVLSAC H GLV +G   F+LM
Sbjct: 430 TSLINAYAFHGLAKEATEVFEKMLSCG--IIPDQISFLGVLSACSHCGLVTKGLHYFNLM 487

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
           +S + ++P S HY+C+VDL  R G ++EA++F+  MP + +   LGA + +C    N  +
Sbjct: 488 TSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNLHANIGL 547

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           ++   + L  IE   + NY + S I+A+ + W D  ++R +M  K  ++ PGCSWI I +
Sbjct: 548 AKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEITN 607

Query: 560 PKQS 563
              S
Sbjct: 608 QVHS 611



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 192/395 (48%), Gaps = 37/395 (9%)

Query: 125 VFISCANLLA-------LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           V + CAN L        L  G  +H+ + K G      + + ++ +Y +C + D A K+F
Sbjct: 49  VHLFCANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLF 108

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKE-------AVELFGRMREEEFLPDEITLVSVLGSC 230
           +E+  R++VSWN +I G    G A E           F RM  E  +PD  T   + G C
Sbjct: 109 EELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVC 168

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
               D+ +G  +  F VK  +DL+ ++GS L+D+Y +CG +  ARRVF  + ++D+V WN
Sbjct: 169 VKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWN 228

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            MI+ YA N L  EA ++FN M++ G N D+ T   +LS C S+   D GK V  +  + 
Sbjct: 229 VMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRL 288

Query: 351 GLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
               D+   S           I DA ++F++M + N V+WN +I         +E + L 
Sbjct: 289 SFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLL 348

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY----SCM 455
             M +EG +  P+++T    +S C +   + E      + + +F +    + +    + +
Sbjct: 349 REMLREGFS--PDELTISSTISLCGYVSAITE-----TMQAHAFAVKSSFQEFLSVANSL 401

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +  Y++ G ++ A     R+  + D +   +L+ A
Sbjct: 402 ISAYSKCGSITSACKCF-RLTREPDLVSWTSLINA 435


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 280/503 (55%), Gaps = 22/503 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-----GLKPDNFTYPFV 125
           A LLF +  + N  ++N MI G    + +     + +Y ++++      +K D FT   V
Sbjct: 258 AQLLFDKNDKKNIVSWNSMIGG----YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNV 313

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              C     L     +H   ++ GL  ++ V+++ I  Y RCG L S+ +VFD +  + +
Sbjct: 314 LPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTV 373

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            SWN+++ GY++    ++A++L+ +M +    PD  T+ S+L +C  +  L  G+ + GF
Sbjct: 374 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGF 433

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            ++N + ++ ++G +L+ +Y  CG    A+ +FD M ++ +V+WN MI  Y+QNGL +EA
Sbjct: 434 ALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEA 493

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC------- 358
           I LF +M   G+ P +I ++ V  AC+ + AL LGK +  +A +  L  DIF        
Sbjct: 494 INLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDM 553

Query: 359 ----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
               G I  + ++F+ +   +  SWN +I+    +GR  EAL LFE+M + G   +P+D 
Sbjct: 554 YAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLG--LKPDDF 611

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF G+L AC HAGLV++G   F+ M +   + PK EHY+C+VD+  RAG + +A   +E 
Sbjct: 612 TFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEE 671

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP   D  +  +LL +C+   N  + ++V   LLE+E     NYV+ S +FA    WDD 
Sbjct: 672 MPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDV 731

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
            ++R  M++ G+ K  GCSWI +
Sbjct: 732 RRVRGRMKDIGLQKDAGCSWIEV 754



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 214/423 (50%), Gaps = 37/423 (8%)

Query: 30  LLKKCPSTKTVQ---QIH------TQMLINFIQKPNFLLIRIIDLKDF----NYASLLFH 76
           LL+ C   K ++   ++H      TQ   +F+     L  RII +       + + ++F 
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFV-----LNTRIITMYSMCGSPSDSRMVFD 58

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLAL 135
           ++ R N + +N ++   T   + +  ++ ++ ++  +   KPDNFT P V  +CA LL L
Sbjct: 59  KLRRKNLFQWNAIVSAYTRN-ELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDL 117

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  +H    K+ L  D  V ++LI MY +CG ++ A KVF+ + ER+LVSWNS+I G+
Sbjct: 118 GLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGF 177

Query: 196 SKMGYAKEAVELFGRM--REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           S+ G+ +E+   F  M   EE F+PD  TLV+VL  C    D+  G  V G  VK  ++ 
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE 237

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + ++LIDMY KC  L  A+ +FD    K++V+WN+MI  YA+         L  +M+
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297

Query: 314 Y--AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
              A +  D+ T++ VL  C     L   K +  Y+ + GL+ +             CG+
Sbjct: 298 TEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGA 357

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +  + +VF+ M      SWNA++   A N    +AL L+ +M+  G    P+  T   +L
Sbjct: 358 LCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG--LDPDWFTIGSLL 415

Query: 421 SAC 423
            AC
Sbjct: 416 LAC 418



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 180/371 (48%), Gaps = 25/371 (6%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE-EEFLP 218
           +ITMY+ CG    +R VFD++R ++L  WN+++S Y++    ++A+ +F  +    E  P
Sbjct: 40  IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKP 99

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D  TL  V+ +C  L DL LG+ + G   K  +  + ++G+ALI MYGKCG +  A +VF
Sbjct: 100 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVF 159

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACASIGA 336
           + M  +++V+WN++I  +++NG   E+   F  M     +  PD  TL+ VL  CA    
Sbjct: 160 EHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEED 219

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           ++ G  V   A + GL  ++            C  + +A  +F+     N VSWN+MI  
Sbjct: 220 IEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGG 279

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A          L ++M  E    + ++ T + VL  C+    +   + L    S   GL
Sbjct: 280 YAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG-YSWRHGL 338

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG---ALLGACQKQKNTDVSQR 502
                  +  +  Y R G L  +    ER+ + +D   +    ALL  C   +N+D  ++
Sbjct: 339 QSNELVANAFIAAYTRCGALCSS----ERVFDLMDTKTVSSWNALL--CGYAQNSD-PRK 391

Query: 503 VMQLLLEIESS 513
            + L L++  S
Sbjct: 392 ALDLYLQMTDS 402



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 14/256 (5%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           +L +CG   D+ +G+ +   V  +    N F + + +I MY  CG+   +R VFD +  K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           ++  WNA+++AY +N L  +A+ +F+ +       PD  TL  V+ ACA +  L LG+ +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
              A++  L  D+F           CG +++A+KVFE MP  N VSWN++I   + NG  
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            E+   F  M     +  P+  T + VL  C     +++G  +  L +   GL  +    
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGL-AVKLGLNEELMVN 242

Query: 453 SCMVDLYARAGHLSEA 468
           + ++D+Y++   LSEA
Sbjct: 243 NSLIDMYSKCRFLSEA 258


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 174/462 (37%), Positives = 250/462 (54%), Gaps = 49/462 (10%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK--VFDEIRERDLVSWNSMISGYSKM 198
           VH+ + + GL +  +V   LI M  +      +    VF ++   +   W +MI GY+  
Sbjct: 61  VHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQ 120

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG-FVVKNKMDLNFYM 257
           G   E+   + RMR +   P   T  ++  +CG   ++ LGK V    ++      + Y+
Sbjct: 121 GLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYV 180

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWN--------------------------- 290
           G+++ID+Y KCG L  AR+VFD M  +DVV+W                            
Sbjct: 181 GNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDM 240

Query: 291 ----AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
               AM+T YAQNG   EA+  F +M+  G+  D++TL GV+SACA +GA+    W+   
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDI 300

Query: 347 ASQRGLRH-----------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
           A + G              D++  CGS D+A KVFE M   N  S+++MI   A +GRAH
Sbjct: 301 AERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAH 360

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            AL LF  M K     RPN VTFIG+LSAC HAGLV++GR+LF  M   FG+ P  +HY+
Sbjct: 361 SALQLFHDMLKT--EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYA 418

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVDL  RAG L EA D V+ MP + +  V GALLGAC+   N D++Q     L ++E +
Sbjct: 419 CMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPN 478

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             GNY++ S I+A+   W++ +K+R ++REKG  K PGCSW 
Sbjct: 479 GIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWF 520



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 254/525 (48%), Gaps = 82/525 (15%)

Query: 3   LRAKAYSRHLAFTEL-NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR 61
           L+ +     + F +L +   LL  +L+S+L  C     ++Q+H  ++ N + + +++L +
Sbjct: 20  LQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTK 79

Query: 62  II------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY-SHSLKLYYQMKRLG 114
           +I      D+   +Y  L+F Q++ PN + +  MIRG   A Q   S S   Y +M+R G
Sbjct: 80  LIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGY--ALQGLLSESTNFYTRMRRDG 137

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLDSA 173
           + P +FT+  +F +C   L ++ G  VH+    I G   D +V +S+I +Y +CG L  A
Sbjct: 138 VGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCA 197

Query: 174 RKVFDEIRERDLVS-------------------------------WNSMISGYSKMGYAK 202
           RKVFDE+ ERD+VS                               W +M++GY++ G  K
Sbjct: 198 RKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPK 257

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYMGSA 260
           EA+E F +M++     DE+TL  V+ +C  LG +    W+     ++      N  +GSA
Sbjct: 258 EALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSA 317

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KCG+   A +VF+ M  ++V ++++MI  YA +G ++ A+ LF+ M    + P+
Sbjct: 318 LIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPN 377

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
           K+T IG+LSAC+  G ++ G+ +  +A                  K F   P  +   + 
Sbjct: 378 KVTFIGILSACSHAGLVEQGRQL--FAKME---------------KFFGVAPSPDH--YA 418

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD----EGRRLF 436
            M+  L   G   EAL L + M  E     PN   +  +L AC   G  D        LF
Sbjct: 419 CMVDLLGRAGCLEEALDLVKTMPME-----PNGGVWGALLGACRIHGNPDIAQIAANELF 473

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
            L  +  G      +Y  + ++YA AG     W+ V ++ + + E
Sbjct: 474 KLEPNGIG------NYILLSNIYASAGR----WEEVSKLRKVIRE 508


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 164/500 (32%), Positives = 269/500 (53%), Gaps = 14/500 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F+ + + +   +N +I G     +K   +L+ +  + + GL  +  +    F +CA
Sbjct: 331 AQRIFNSLPKHSLQCYNAIIVGCVRN-EKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           ++     G  +HS   K  L  +  V++S++ MY +C  L  A  +FDE+  RD VSWN+
Sbjct: 390 SIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNA 449

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+ + + G  +E + LF  M      PD+ T  SVL +C     L  G  +   ++K+ 
Sbjct: 450 VIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSG 509

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ ++G ALIDMY KCG +  A+++ D +  + +V+WNA+I  +     S +A   F 
Sbjct: 510 LGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFY 569

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M    V PD  T   VL ACA++ ++ LGK +     +  L  D++           CG
Sbjct: 570 EMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCG 629

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           ++ D+  VFE  P  + V+WNAMI   A +G   EAL  FERM  E    RPN  TF+ +
Sbjct: 630 NMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLEN--VRPNHATFVSI 687

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L AC H G +D+G   F+ M + +GL P+ EHYSCM+D+  R+G +SEA   ++ MP + 
Sbjct: 688 LRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEA 747

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D ++   LL  C+   N +++++    +L++E  +S   ++ S I+A+  MW   ++MR 
Sbjct: 748 DAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRK 807

Query: 540 LMREKGVSKTPGCSWIGIDD 559
           +MR   + K PGCSWI + D
Sbjct: 808 MMRYNKLKKEPGCSWIEVKD 827



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 209/424 (49%), Gaps = 31/424 (7%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSH--SLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           +F +I   N   ++ +I G     Q   H   L+L+ +M+++G+      Y  VF SCA 
Sbjct: 233 IFSEIPVKNWVCWSAIIAGCV---QNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAG 289

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L AL  G  +H+   K     D  V  + + MYA+CG L  A+++F+ + +  L  +N++
Sbjct: 290 LSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAI 349

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I G  +     EA++ F  + +     +EI+L     +C  +   + G+ +    VK+ +
Sbjct: 350 IVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTL 409

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             N  + ++++DMYGKC AL  A  +FD M  +D V+WNA+I A+ QNG   E + LF  
Sbjct: 410 RSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFAS 469

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M    + PD+ T   VL AC+S  AL+ G  +     + GL  D F           CG 
Sbjct: 470 MLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGM 529

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I++A K+ + +     VSWNA+I+       + +A   F  M K   + +P++ T+  VL
Sbjct: 530 IEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKM--SVKPDNFTYAIVL 587

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDFVER 474
            AC +   V  G+++        G I K E +      S +VD+Y++ G++ ++    E+
Sbjct: 588 DACANLASVGLGKQI-------HGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEK 640

Query: 475 MPEK 478
            P K
Sbjct: 641 APNK 644



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 236/502 (47%), Gaps = 58/502 (11%)

Query: 30  LLKKCP---STKTVQQIHTQMLIN-FIQK---PNFLLIRIIDLKDFNYASLLFHQISRPN 82
           ++++C    S K  +Q H +M+++ FI      N L+   +     NYA  +F ++S+ +
Sbjct: 49  IIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRD 108

Query: 83  EYAFNVMIRGLTTAWQ------------------------------KYSHSLKLYYQMKR 112
             ++N MI G   A +                              +   S+ ++  M R
Sbjct: 109 VISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGR 168

Query: 113 ---LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
              +G   D  T+  V  +C+ L     G+ VH  + ++G  +D     +L+ MYA+C +
Sbjct: 169 SEEVGF--DQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKR 226

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           LD + K+F EI  ++ V W+++I+G  +       +ELF  M++      +    SV  S
Sbjct: 227 LDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRS 286

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L  L +G  +    +K     +  +G+A +DMY KCG+L  A+R+F+++    +  +
Sbjct: 287 CAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCY 346

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI-GALDLGKWVDKYAS 348
           NA+I    +N    EA+  F  +  +G+  ++I+L G  SACASI G LD G+ +   + 
Sbjct: 347 NAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD-GRQLHSLSV 405

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +  LR +I            C ++ +A  +F++M   + VSWNA+I+A   NG   E L 
Sbjct: 406 KSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLN 465

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF  M +      P+  T+  VL AC     ++ G  + + +  S GL   S     ++D
Sbjct: 466 LFASMLRL--RMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKS-GLGLDSFVGGALID 522

Query: 458 LYARAGHLSEAWDFVERMPEKV 479
           +Y + G + EA    +R+ ++ 
Sbjct: 523 MYCKCGMIEEAKKIHDRIEQQT 544



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 199/433 (45%), Gaps = 47/433 (10%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  +   C++  +L  G   H+ +   G   D ++S+ L+ MY RC  L+ A KVF+++
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 181 RERDL-------------------------------VSWNSMISGYSKMGYAKEAVELFG 209
            +RD+                               VSWNSM+SG+ + G  ++++++F 
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 210 RM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            M R EE   D+ T   VL +C  L D  LG  V G +V+     +   GSAL+DMY KC
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
             L  + ++F  +  K+ V W+A+I    QN      + LF  M+  G+   +     V 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
            +CA + AL +G  +  +A +     DI            CGS+ DA ++F  +P  +  
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ 344

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
            +NA+I     N +  EAL  F+ + K G     N+++  G  SAC       +GR+L  
Sbjct: 345 CYNAIIVGCVRNEKGFEALQFFQLLLKSGLGF--NEISLSGAFSACASIKGDLDGRQLHS 402

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
           L   S  L       + ++D+Y +   LSEA    + M E+ D +   A++ A ++  N 
Sbjct: 403 LSVKS-TLRSNICVANSILDMYGKCEALSEACCMFDEM-ERRDAVSWNAVIAAHEQNGNE 460

Query: 498 DVSQRVMQLLLEI 510
           + +  +   +L +
Sbjct: 461 EETLNLFASMLRL 473



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 142/338 (42%), Gaps = 50/338 (14%)

Query: 217 LPDEI-TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           LP +I T   ++  C D   L  GK     ++ +    + Y+ + L+ MY +C  L  A 
Sbjct: 39  LPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAY 98

Query: 276 RVFDAMVNKDVVTWNAMITAYA-------------------------------QNGLSNE 304
           +VF+ M  +DV+++N MI+ YA                               QNG   +
Sbjct: 99  KVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRK 158

Query: 305 AIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--- 360
           +I +F  M +   V  D+ T   VL AC+ +    LG  V     + G   D+  GS   
Sbjct: 159 SIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALL 218

Query: 361 --------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                   +DD+LK+F ++PV N V W+A+I+    N      L LF+ M K G     +
Sbjct: 219 DMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278

Query: 413 DVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
              +  V  +C     +  G +L    +   FG        +  +D+YA+ G L++A   
Sbjct: 279 --IYASVFRSCAGLSALKVGTQLHAHALKCDFG--SDITVGTATLDMYAKCGSLADAQRI 334

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
              +P+   +     ++G  + +K  +  Q   QLLL+
Sbjct: 335 FNSLPKHSLQCYNAIIVGCVRNEKGFEALQ-FFQLLLK 371


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 184/499 (36%), Positives = 283/499 (56%), Gaps = 19/499 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSH--SLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           LF+++   +  ++  MI G     Q   H  ++ L+ +M R G KPD F    V  SC +
Sbjct: 312 LFNRLVDKDVVSWTTMIAG---CMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGS 368

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L AL  G  VH+   K+ +D DD V + LI MYA+C  L +ARKVFD +   ++VS+N+M
Sbjct: 369 LQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAM 428

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I GYS+     EA++LF  MR     P  +T VS+LG    L  L L   +   ++K  +
Sbjct: 429 IEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGV 488

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
            L+ + GSALID+Y KC  +  AR VF+ + ++D+V WNAM + Y+Q   + E++ L+  
Sbjct: 489 SLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKD 548

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           ++ + + P++ T   V++A ++I +L  G+       + GL  D F           CGS
Sbjct: 549 LQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGS 608

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I+++ K F      +   WN+MIS  A +G A +AL +FERM  EG   +PN VTF+G+L
Sbjct: 609 IEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEG--VKPNYVTFVGLL 666

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC HAGL+D G   F+ M S FG+ P  +HY+CMV L  RAG + EA +FV++MP K  
Sbjct: 667 SACSHAGLLDLGFHHFESM-SKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPA 725

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
            +V  +LL AC+   + ++     ++ +  + ++SG+Y++ S IFA+  MW     +R  
Sbjct: 726 AVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREK 785

Query: 541 MREKGVSKTPGCSWIGIDD 559
           M    V K PG SWI +++
Sbjct: 786 MDMSRVVKEPGWSWIEVNN 804



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 252/513 (49%), Gaps = 30/513 (5%)

Query: 18  NDPSLLREKL---LSLLKKCPSTKTV-----QQIHTQMLINFIQKPNFLLIRIIDLKDFN 69
           + P L++ K+   L  L + PS   +     ++IH  +++    + +  L+  + L  ++
Sbjct: 40  DSPILIQRKIGRELGKLLQLPSPNILTSHYYKKIHAHIVVLGFHQHDVFLVNTL-LHAYS 98

Query: 70  YASL------LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
             +L      LF  +   N   ++ M+   T         L     M+    KP+ +   
Sbjct: 99  KMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILA 158

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            V  +C  L  L+  + +H  V K G  +D +V  SLI  YA+ G +D AR +FD ++ +
Sbjct: 159 SVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVK 218

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
             V+W ++I+GY+K+G ++ +++LF +MRE +  PD   + SVL +C  L  L  GK + 
Sbjct: 219 TTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIH 278

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           G+V++   D++  + + +ID Y KC  +   R++F+ +V+KDVV+W  MI    QN    
Sbjct: 279 GYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHG 338

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
           +A+ LF  M   G  PD      VL++C S+ AL  G+ V  YA +  + +D F      
Sbjct: 339 DAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLI 398

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                C S+ +A KVF+ +   N VS+NAMI   +   +  EAL LF  M      + P 
Sbjct: 399 DMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLS--LSPPT 456

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            +TF+ +L       L++   ++  L+   FG+   S   S ++D+Y++   + +A    
Sbjct: 457 LLTFVSLLGLSSSLFLLELSSQIHCLI-IKFGVSLDSFAGSALIDVYSKCSCVGDARLVF 515

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
           E + ++ D +V  A+     +Q   + S ++ +
Sbjct: 516 EEIYDR-DIVVWNAMFSGYSQQLENEESLKLYK 547


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 172/498 (34%), Positives = 268/498 (53%), Gaps = 48/498 (9%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH-GVSVHSSVFKIGLDEDDHVSHSLIT 162
           L++Y  M   G +PD +T+P +  +          G +VH+ V K G++ + HV+ SL+ 
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 163 MYARCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           MYA  G    AR + D    R     V WN++ISG+ +    + +   F  M     +P 
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPT 122

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC----------- 268
            +T ++VL +CG    + LG  V   VV + +  +  +G+ALIDMY +C           
Sbjct: 123 PVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFE 182

Query: 269 --------------------GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
                               G +  AR +FD M  +D V+W AMI  Y Q G   EA+ +
Sbjct: 183 GMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEM 242

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F  M+++ V  D+ T++ V++ACA +GAL+ G+W   Y S+ G++ D F           
Sbjct: 243 FREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSK 302

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CGSI  AL VF++M + ++ +W A+I  LA NG   EA+ +F RM +   A  P++VTFI
Sbjct: 303 CGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEA--PDEVTFI 360

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVL+AC HAGLVD+GR  F  M+ S+G+ P   H+ C++DL  RAG L EA + +  MP 
Sbjct: 361 GVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPM 420

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           + +  + G LL AC+   N+++ Q   + LLE+++ N   Y++ S ++A    W+D  ++
Sbjct: 421 RPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRL 480

Query: 538 RALMREKGVSKTPGCSWI 555
           R ++ EKG+ K PGCS I
Sbjct: 481 RQVIMEKGIKKEPGCSLI 498



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 124/284 (43%), Gaps = 13/284 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           L+ +  +C       ++   M +        ++   + L   + A  LF  +   +  ++
Sbjct: 164 LIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSW 223

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
             MI G   A Q +  +L+++ +M+   ++ D FT   V  +CA L AL  G      + 
Sbjct: 224 TAMIDGYVQAGQ-FREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMS 282

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           + G+  D  V ++L+ MY++CG +  A  VF E+  RD  +W ++I G +  G+ +EA+ 
Sbjct: 283 RHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAIN 342

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLG------DLVLGKWVEGFVVKNKMDLNFYMGSA 260
           +F RM      PDE+T + VL +C   G      D  L       +  N M         
Sbjct: 343 MFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFG-----C 397

Query: 261 LIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSN 303
           LID+ G+ G L  A      M +  +   W  ++ A   +G S 
Sbjct: 398 LIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSE 441


>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 264/472 (55%), Gaps = 24/472 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L LY QM       ++FT+    I+ ++L AL+  + +H+   K G   D  + ++L+ 
Sbjct: 60  ALLLYNQMVLHRTSHNHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLH 119

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
            Y        A+ VF  I   D+VSW S+ISG SK G+ +EA+  F  M   +  P+  T
Sbjct: 120 SYVVENNFVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM---DVKPNTST 176

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           LVSV+ +C  L  +  GK + G+ +++    N  + +AL+D Y KCG LV A+ +F  M 
Sbjct: 177 LVSVVSACCGLRAVRFGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMF 236

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGK 341
            +DV++W  M+   AQ GL  EA+ +F  M   G   P+++TL+ VL+AC+S+ AL+LG+
Sbjct: 237 RRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGR 296

Query: 342 WVDKYASQRGLRHDIF---------------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           WV  Y S R   +D+                C  +  A++VF ++   + +SW+ +I  +
Sbjct: 297 WVHSYISTR---YDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGM 353

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A NG    AL  F  M   G    P+DVTFIG+LSAC HAGLV++G   F  M++ +G+ 
Sbjct: 354 AMNGHGMHALQFFSLMLVHG--VSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIA 411

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P+ +HY+CMVD+Y RAG L EA  F+  MP + +  + GALL AC+   N  +  R+ Q 
Sbjct: 412 PQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGRIDQS 471

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L   +  + G   + S  +A+   WDD+ K+R +MR+ G+ K  GCSWI +D
Sbjct: 472 LRNAKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMGLKKMSGCSWIEVD 523


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 267/444 (60%), Gaps = 17/444 (3%)

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
           F   SC    ++++  ++H+ V K     D  +   L++MY + G  + A+++FDE+  +
Sbjct: 127 FAISSCT---SVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKWV 242
           DLVSWNS++SG S  GY    +  F RMR E    P+E+TL+SV+ +C D+G L  GK +
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G VVK  M     + ++LI+MYGK G L  A ++F+ M  + +V+WN+M+  +  NG +
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 303

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---- 358
            + + LFN MK AG+NPD+ T++ +L AC   G     + +  Y  + G   DI      
Sbjct: 304 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 363

Query: 359 -------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                  G ++ +  +FE++   + ++W AM++  A +    EA+ LF+ M KEG     
Sbjct: 364 LNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG--VEV 421

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           + VTF  +LSAC H+GLV+EG++ F++MS  + + P+ +HYSCMVDL  R+G L +A++ 
Sbjct: 422 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 481

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           ++ MP +    V GALLGAC+   N ++ + V + LL ++ S+  NY++ S I++   +W
Sbjct: 482 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLW 541

Query: 532 DDSAKMRALMREKGVSKTPGCSWI 555
            D++K+RALM+E+ +++ PGCS+I
Sbjct: 542 RDASKVRALMKERRLTRNPGCSFI 565



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 224/466 (48%), Gaps = 46/466 (9%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK-DFNY---ASLLFHQISR 80
           + L+  +  C S      IH +++ +      F+  R++ +     Y   A  LF ++  
Sbjct: 123 QSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPN 182

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLALNHGV 139
            +  ++N ++ GL+         L  + +M+   G +P+  T   V  +CA++ AL+ G 
Sbjct: 183 KDLVSWNSLMSGLS-GRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGK 241

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H  V K+G+     V +SLI MY + G LD+A ++F+E+  R LVSWNSM+  ++  G
Sbjct: 242 SLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNG 301

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           YA++ ++LF  M+     PD+ T+V++L +C D G     + +  ++ +   + +  + +
Sbjct: 302 YAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 361

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+++Y K G L  +  +F+ + ++D + W AM+  YA +    EAI LF+ M   GV  
Sbjct: 362 ALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 421

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS- 378
           D +T   +LSAC+  G ++ GK                        K FE M     V  
Sbjct: 422 DHVTFTHLLSACSHSGLVEEGK------------------------KYFEIMSEVYRVEP 457

Query: 379 ----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
               ++ M+  L  +GR  +A  L + M  E     P+   +  +L AC   G V+ G+ 
Sbjct: 458 RLDHYSCMVDLLGRSGRLEDAYELIKSMPME-----PSSGVWGALLGACRVYGNVELGKE 512

Query: 435 LFDLMSSSFGLIPKSEH--YSCMVDLYARAGHLSEAWDFVERMPEK 478
           + + + S    +  S+H  Y  + ++Y+ AG   +A      M E+
Sbjct: 513 VAEQLLS----LDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKER 554


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 298/560 (53%), Gaps = 39/560 (6%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID------------LKDFNYA 71
           R  L  L  +  S  T+ QIH  +L + +     LL   +             L   N+A
Sbjct: 17  RTCLHILQCRTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAIINHA 76

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFVFISC 129
              F+     + +  N MI     A Q +S    L+  ++R      PD +T+  +   C
Sbjct: 77  RRFFNATHTRDTFLCNSMIAAHFAARQ-FSQPFTLFRDLRRQAPPFTPDGYTFTALVKGC 135

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A  +A   G  +H  V K G+  D +V+ +L+ MY + G L SARKVFDE+  R  VSW 
Sbjct: 136 ATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWT 195

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I GY++ G   EA  LF  M +     D +   +++     +G + L +  E F   N
Sbjct: 196 AVIVGYARCGDMSEARRLFDEMEDR----DIVAFNAMIDGYVKMGCVGLAR--ELF---N 246

Query: 250 KM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           +M + N    ++++  Y   G +  A+ +FD M  K+V TWNAMI  Y QN  S++A+ L
Sbjct: 247 EMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALEL 306

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF-- 357
           F  M+ A V P+++T++ VL A A +GALDLG+W+ ++A ++ L           D++  
Sbjct: 307 FREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAK 366

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I  A   FE M      SWNA+I+  A NG A EAL +F RM +EG    PN+VT I
Sbjct: 367 CGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFG--PNEVTMI 424

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVLSAC H GLV+EGRR F+ M   FG+ P+ EHY CMVDL  RAG L EA + ++ MP 
Sbjct: 425 GVLSACNHCGLVEEGRRWFNAMER-FGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPY 483

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
             + I+L + L AC    +   ++RV++ +++++   +GNYV+   ++A  + W D   +
Sbjct: 484 DANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTDVEDV 543

Query: 538 RALMREKGVSKTPGCSWIGI 557
           + +M+++G SK   CS I I
Sbjct: 544 KQMMKKRGTSKEVACSVIEI 563


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 290/525 (55%), Gaps = 30/525 (5%)

Query: 57  FLLIRIIDLKDFNYASLLFHQIS----RPNEYAFNVMIRGLTTAWQK----------YSH 102
           ++L R I+   F  +SL+F        R  E  F  +    T+ W               
Sbjct: 225 YILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKE 284

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLI 161
           +L L+  M++  ++P++ T   +  SC NL  L  G SVH  V K  LD + D +  +L+
Sbjct: 285 ALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLL 344

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            +YA   K D   K+  EI  R +  WN++IS Y++ G  KE V+LF RM+++ F+PD  
Sbjct: 345 ELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSF 404

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           +L S L + G+ G+L LG  + G V+K    ++ Y+ ++LI+MY KCG +  A  +FD M
Sbjct: 405 SLASSLSASGNEGELQLGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQM 463

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             K VVTWN+MI+  +QNG S +AI LF+ M        ++  + V+ AC+ +G L+ GK
Sbjct: 464 EPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGK 523

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W+       G+R  IF           CG +  A +VF++M   + VSW+++IS+   +G
Sbjct: 524 WIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHG 583

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +  E + LF +M + G   +PNDVT + VLSAC HAG V EG   F+ M   FG+ PK E
Sbjct: 584 QISEVIFLFSKMLESG--IKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRD-FGIEPKRE 640

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           H+ C+VDL +RAG L EA++ ++ MP      + GALL  C+  +  D+++ + + L  I
Sbjct: 641 HFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNI 700

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++ ++G+Y + S I+A    W++  ++R++M+  G+ K P  S +
Sbjct: 701 QTDDTGHYTLLSNIYAAGGEWNEFGEVRSMMKGTGLKKVPAYSVV 745



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 202/396 (51%), Gaps = 19/396 (4%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNE 83
           + L K   + + + Q+H  +++  +        ++I+    L D   ++ +F     P+ 
Sbjct: 5   MPLFKASTTLRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDS 64

Query: 84  YAFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           + + V+++  +  W   Y  ++ LY+QM    ++ +++T+P V  +C+    L  G  VH
Sbjct: 65  FMWGVLLK--SHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVH 122

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K G D D  V+ +L+++Y   G LDSARKVF E+  RDLVSW+S+IS   + G   
Sbjct: 123 GRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEIN 182

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E ++ F  M  E   PD + +++V+ +CG+LG L L K   G+++K  ++ + ++ S+LI
Sbjct: 183 EGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLI 242

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG+L  A  VF+ +  +   TW AMI++Y   G   EA+ LF  M+   V P+ +
Sbjct: 243 FMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSV 302

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC------------GSIDDALKVFED 370
           T+  +L +C ++  L  GK V     +  L  ++ C               D   K+  +
Sbjct: 303 TMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHE 362

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
           +       WN +IS  A  G   E + LF RM K+G
Sbjct: 363 IGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQG 398


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 290/525 (55%), Gaps = 30/525 (5%)

Query: 57  FLLIRIIDLKDFNYASLLFHQIS----RPNEYAFNVMIRGLTTAWQK----------YSH 102
           ++L R I+   F  +SL+F        R  E  F  +    T+ W               
Sbjct: 225 YILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKE 284

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLI 161
           +L L+  M++  ++P++ T   +  SC NL  L  G SVH  V K  LD + D +  +L+
Sbjct: 285 ALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLL 344

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            +YA   K D   K+  EI  R +  WN++IS Y++ G  KE V+LF RM+++ F+PD  
Sbjct: 345 ELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSF 404

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           +L S L + G+ G+L LG  + G V+K    ++ Y+ ++LI+MY KCG +  A  +FD M
Sbjct: 405 SLASSLSASGNEGELQLGLQIHGHVIKRPF-MDEYVFNSLINMYSKCGYVDLAYMIFDQM 463

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             K VVTWN+MI+  +QNG S +AI LF+ M        ++  + V+ AC+ +G L+ GK
Sbjct: 464 EPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGK 523

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W+       G+R  IF           CG +  A +VF++M   + VSW+++IS+   +G
Sbjct: 524 WIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHG 583

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +  E + LF +M + G   +PNDVT + VLSAC HAG V EG   F+ M   FG+ PK E
Sbjct: 584 QISEVIFLFSKMLESG--IKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRD-FGIEPKRE 640

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           H+ C+VDL +RAG L EA++ ++ MP      + GALL  C+  +  D+++ + + L  I
Sbjct: 641 HFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNI 700

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           ++ ++G+Y + S I+A    W++  ++R++M+  G+ K P  S +
Sbjct: 701 QTDDTGHYTLLSNIYAAGGEWNEFGEVRSMMKGTGLKKVPAYSVV 745



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 203/396 (51%), Gaps = 19/396 (4%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNE 83
           + L K   + +T+ Q+H  +++  +        ++I+    L D   ++ +F     P+ 
Sbjct: 5   MPLFKASTTLRTLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDS 64

Query: 84  YAFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           + + V+++  +  W   Y  ++ LY+QM    ++ +++T+P V  +C+    L  G  VH
Sbjct: 65  FMWGVLLK--SHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVH 122

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K G D D  V+ +L+++Y   G LDSARKVF E+  RDLVSW+S+IS   + G   
Sbjct: 123 GRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEIN 182

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E ++ F  M  E   PD + +++V+ +CG+LG L L K   G+++K  ++ + ++ S+LI
Sbjct: 183 EGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLI 242

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY KCG+L  A  VF+ +  +   TW AMI++Y   G   EA+ LF  M+   V P+ +
Sbjct: 243 FMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSV 302

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC------------GSIDDALKVFED 370
           T+  +L +C ++  L  GK V     +  L  ++ C               D   K+  +
Sbjct: 303 TMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHE 362

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
           +       WN +IS  A  G   E + LF RM K+G
Sbjct: 363 IGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQG 398


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 290/570 (50%), Gaps = 43/570 (7%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L+ C +   ++   Q+H   L +       +    +D+     +   A +LF      
Sbjct: 244 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENL 303

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++N MI G +     +  +L L++++   GL  D  +   VF +CA +  L+ G+ +
Sbjct: 304 NRQSYNAMITGYSQEEHGFK-ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           +    K  L  D  V+++ I MY +C  L  A +VFDE+R RD VSWN++I+ + + G  
Sbjct: 363 YGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKG 422

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            E + LF  M      PDE T  S+L +C   G L  G  +   +VK+ M  N  +G +L
Sbjct: 423 YETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSL 481

Query: 262 IDMYGKCGALVPARRV----------------FDAMVNKDV----VTWNAMITAYAQNGL 301
           IDMY KCG +  A ++                 + M NK +    V+WN++I+ Y     
Sbjct: 482 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 541

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           S +A MLF RM   G+ PDK T   VL  CA++ +  LGK +     ++ L+ D++    
Sbjct: 542 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICST 601

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG + D+  +FE     + V+WNAMI   A +G+  EA+ LFERM  E    +
Sbjct: 602 LVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILEN--IK 659

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTFI +L AC H GL+D+G   F +M   +GL P+  HYS MVD+  ++G +  A +
Sbjct: 660 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 719

Query: 471 FVERMPEKVDEIVLGALLGACQ-KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
            +  MP + D+++   LLG C   + N +V++     LL ++  +S  Y + S ++A+  
Sbjct: 720 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 779

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           MW+  + +R  MR   + K PGCSW+ + D
Sbjct: 780 MWEKVSDLRRNMRGFKLKKEPGCSWVELKD 809



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 234/485 (48%), Gaps = 49/485 (10%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q H  M+I+  +   F+L  ++ +    +DF  AS++F ++   +  ++N MI G + +
Sbjct: 26  KQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 85

Query: 97  WQKYS------------------------------HSLKLYYQMKRLGLKPDNFTYPFVF 126
              +                                S++++  M R G++ D  T+  + 
Sbjct: 86  NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 145

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             C+ L   + G+ +H  V ++G D D   + +L+ MYA+  +   + +VF  I E++ V
Sbjct: 146 KVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSV 205

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SW+++I+G  +      A++ F  M++      +    SVL SC  L +L LG  +    
Sbjct: 206 SWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHA 265

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K+    +  + +A +DMY KC  +  A+ +FD   N +  ++NAMIT Y+Q     +A+
Sbjct: 266 LKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKAL 325

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
           +LF+R+  +G+  D+I+L GV  ACA +  L  G  +   A +  L  D+          
Sbjct: 326 LLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMY 385

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             C ++ +A +VF++M   + VSWNA+I+A   NG+ +E L LF  M +      P++ T
Sbjct: 386 GKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR--SRIEPDEFT 443

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F  +L AC   G +  G  +   +  S G+   S     ++D+Y++ G + EA     R 
Sbjct: 444 FGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF 501

Query: 476 PEKVD 480
            ++ +
Sbjct: 502 FQRAN 506



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 237/511 (46%), Gaps = 42/511 (8%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K F  +  +F  I   N  +++ +I G        S +LK + +M+++        Y  V
Sbjct: 187 KRFVESLRVFQGIPEKNSVSWSAIIAGCVQN-NLLSLALKFFKEMQKVNAGVSQSIYASV 245

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             SCA L  L  G  +H+   K     D  V  + + MYA+C  +  A+ +FD     + 
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 305

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            S+N+MI+GYS+  +  +A+ LF R+       DEI+L  V  +C  +  L  G  + G 
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 365

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K+ + L+  + +A IDMYGKC AL  A RVFD M  +D V+WNA+I A+ QNG   E 
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 425

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DI 356
           + LF  M  + + PD+ T   +L AC   G+L  G  +     + G+           D+
Sbjct: 426 LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 484

Query: 357 F--CGSIDDALKV----FEDMPVTNE----------------VSWNAMISALAFNGRAHE 394
           +  CG I++A K+    F+   V+                  VSWN++IS      ++ +
Sbjct: 485 YSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSED 544

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A +LF RM + G    P+  T+  VL  C +      G+++    +       +S+ Y C
Sbjct: 545 AQMLFTRMMEMG--ITPDKFTYATVLDTCANLASAGLGKQIH---AQVIKKELQSDVYIC 599

Query: 455 --MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE 511
             +VD+Y++ G L ++    E+   + D +   A++ G     K  +  Q   +++LE  
Sbjct: 600 STLVDMYSKCGDLHDSRLMFEKSLRR-DFVTWNAMICGYAHHGKGEEAIQLFERMILENI 658

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
             N   ++   +  A++ + D   +   +M+
Sbjct: 659 KPNHVTFISILRACAHMGLIDKGLEYFYMMK 689



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 171/348 (49%), Gaps = 17/348 (4%)

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           + +I  Y++   +  A   F+ +  RD+VSWNSM+SGY + G + +++E+F  M  E   
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            D  T   +L  C  L D  LG  + G VV+   D +    SAL+DMY K    V + RV
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F  +  K+ V+W+A+I    QN L + A+  F  M+       +     VL +CA++  L
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSEL 255

Query: 338 DLGKWVDKYASQ---------RGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
            LG  +  +A +         R    D++  C ++ DA  +F++    N  S+NAMI+  
Sbjct: 256 RLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGY 315

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGL 445
           +      +ALLLF R+   G     ++++  GV  AC     + EG +++ L + SS  L
Sbjct: 316 SQEEHGFKALLLFHRLMSSGLGF--DEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL 373

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
                + +  +D+Y +   L+EA+   + M  + D +   A++ A ++
Sbjct: 374 DVCVANAA--IDMYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQ 418


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 195/586 (33%), Positives = 311/586 (53%), Gaps = 67/586 (11%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQ--KPNFL-LIRIIDLKDF----NYASLL 74
           ++  KL +L+KKC + K  +QIH Q++ N +   +P F+  I + D+ ++    NY   +
Sbjct: 1   MVATKLTTLMKKCSTVKHAKQIHAQIITNNLTHLEPIFIHRILLCDITNYKTISNYILSI 60

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            H +  P+ +++  +IR  +   Q +  ++ LY QM+R+GL P +     +  SCA +  
Sbjct: 61  LHHLRNPDSFSWGCVIRFFSQKGQ-FVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVED 119

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
              G+ +H  V K G D   +V  +L+ +Y + G + +ARKVFDE+ ++++VSWNS++SG
Sbjct: 120 DLCGLLIHGHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSG 179

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG-SCGDLGDLVLGKWVEGFVVKNKM-D 252
           Y K G   E    F          DEI L  V+  +C   G    GK      +  +M +
Sbjct: 180 YIKGGNLDEGQRFF----------DEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPE 229

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMV------------------------------ 282
            NF   + +I  Y  CG++V AR +FDAM                               
Sbjct: 230 RNFASWNTMITGYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQM 289

Query: 283 -NKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDL 339
            +KD++++NAMI  YAQ+    EA+ LFN M    + ++PDK+TL  V+SAC+ +G L+ 
Sbjct: 290 DDKDLLSYNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEH 349

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
            +W++   +  G+  D             CGSID A ++F  +   + V+++AMI     
Sbjct: 350 WRWIESQINNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGI 409

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           NGRA +A+ LFERM+ E     PN VT+ G+L+A  HAGL +EG R F  M  + G++P 
Sbjct: 410 NGRASDAVELFERMAGE--CIIPNLVTYTGILTAYNHAGLAEEGYRCFISMKDN-GIVPS 466

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            +HY  MVDL  RAG L EA+  + +MP + +  V GALL AC+   N  + +  +Q  +
Sbjct: 467 VDHYGIMVDLLGRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCI 526

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           ++ES  +G Y + S I+A +  W+D+ K+   +  K + K PGCSW
Sbjct: 527 KLESETAGYYSLLSGIYATVGKWNDAKKLTTGVEGKKIIKIPGCSW 572


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 262/495 (52%), Gaps = 66/495 (13%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA--RCGKLDSARKVFDEIRE 182
           +F +C ++  L     +HS   K G+  +  + + +++       G +  AR++FD I E
Sbjct: 20  LFETCKSMYHLKQ---IHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPE 76

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
             + SWN M  GYS++   K  V L+  M E    PD  T   +         L LG+ +
Sbjct: 77  PSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGREL 136

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ---- 298
              VVK  +D N +  +ALI+MY  CG +  AR +FD     DVVTWNAMI+ Y +    
Sbjct: 137 HCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKD 196

Query: 299 --------NGLSN------------------------------------EAIMLFNRMKY 314
                    G  N                                    EA+MLF  M+ 
Sbjct: 197 VISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQT 256

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
           + + PD+ T++ VL+ACA +GAL+LG+W+  Y  +  +++D F           CG+++ 
Sbjct: 257 SKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEM 316

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           AL +F  +P  ++ +W AM+  LA NG   EAL +F +M K   +  P++VT++GVLSAC
Sbjct: 317 ALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLK--ASVTPDEVTYVGVLSAC 374

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H G+VDEG++ F  M++  G+ P   HY CMVDL  +AGHL EA + ++ MP K + IV
Sbjct: 375 THTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIV 434

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            GALLGAC+  K+ ++++R ++ +LE+E +N   YV+   I+A    WD   ++R +M +
Sbjct: 435 WGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMD 494

Query: 544 KGVSKTPGCSWIGID 558
           +G+ KTPGCS I ++
Sbjct: 495 RGIKKTPGCSLIEMN 509



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 225/457 (49%), Gaps = 80/457 (17%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISRP 81
           LSL + C S   ++QIH++ +   I     +  +I+      +  D  YA  LF  I  P
Sbjct: 18  LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEP 77

Query: 82  NEYAFNVMIRGLT-TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           + +++N+M +G +  A  K    + LY +M    +KPD +TYPF+F      +AL  G  
Sbjct: 78  SVFSWNIMFKGYSRIACPKLG--VSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRE 135

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARC--------------------------------- 167
           +H  V K GLD +    ++LI MY+ C                                 
Sbjct: 136 LHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKK 195

Query: 168 ---------------GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
                          G++D+ARK F ++ ERD VSW +MI GY ++   KEA+ LF  M+
Sbjct: 196 DVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQ 255

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
             +  PDE T+VSVL +C  LG L LG+W+  ++ KNK+  + ++G+ALIDMY KCG + 
Sbjct: 256 TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVE 315

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
            A  +F+ +  +D  TW AM+   A NG   EA+ +F++M  A V PD++T +GVLSAC 
Sbjct: 316 MALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACT 375

Query: 333 SIGALDLGKWVDKYASQRGLRHDI---------------FCGSIDDALKVFEDMPV-TNE 376
             G +D GK   K+ +    RH I                 G + +A ++ ++MP+  N 
Sbjct: 376 HTGMVDEGK---KFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNS 432

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
           + W A++ A     R H+   + ER  ++     PN+
Sbjct: 433 IVWGALLGAC----RIHKDAEMAERAIEQILELEPNN 465


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 251/454 (55%), Gaps = 14/454 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           DN++      + A + +L+ G   H+   K+ L  D  V ++LI MY+ C    SAR V 
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63

Query: 178 DEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           D       D+VSWN++I+GY + G   +A++ F +M +E+   DE+TL++VL +C   G 
Sbjct: 64  DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 123

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G      VV N  ++N Y+GS+L+ MY KCG +  ARRVF+ M  ++VV W +MI  
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
             Q+G   EA+ LF  M+ AGV  D  T+  V+S+C  +GALDLG+++  Y    GL  +
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE 243

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG ++ A ++F  +   +  +W  MI   A NG   EAL LF +M  
Sbjct: 244 LSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEG 303

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           E     PN+V F+GVL+AC H GLV++G   F  MS  + L+P+ EHY CMVDL  RA  
Sbjct: 304 ED-KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKL 362

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L+EA  F++ MP   D +V  +LL AC+      +++   + + ++E    G +V+ S +
Sbjct: 363 LAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNV 422

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +A    W D   +R  M     SK PGCS+I +D
Sbjct: 423 YATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVD 456



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 207/397 (52%), Gaps = 21/397 (5%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQISR--P 81
           +S   + PS     Q H   L   +   +F+L  +I++    NY   A L+     R   
Sbjct: 12  ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 71

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++N +I G        + +L+ ++QM +  ++ D  T   V ++CA   A+  G   
Sbjct: 72  DVVSWNTIIAGYIRGGMP-NKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 130

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V   G + + ++  SL++MYA+CG ++ AR+VF+ + ER++V W SMI+G ++ G  
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRF 190

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KEAV+LF  M+      D+ T+ +V+ SCG +G L LG+++  +   + +     + ++L
Sbjct: 191 KEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSL 250

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG +  A ++F  +  +DV TW  MI  +A NGL  EA+ LF +M+    V P+
Sbjct: 251 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310

Query: 321 KITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIFCGS--IDDALKVF 368
           ++  +GVL+AC+  G ++ G     +    Y     + H     D+   +  + +A +  
Sbjct: 311 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFI 370

Query: 369 EDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSK 404
           +DMPV  + V W +++ A   +G+   A    ER+ +
Sbjct: 371 KDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQ 407


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/398 (38%), Positives = 244/398 (61%), Gaps = 13/398 (3%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           AR +F+ + E D+V +NSM  GYS+     E   LF  + E+  LPD  T  S+L +C  
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L  G+ +    +K  +D N Y+   LI+MY +C  +  AR VFD +V   VV +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           IT YA+    NEA+ LF  M+   + P++ITL+ VLS+CA +G+LDLGKW+ KYA +   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 353 RH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
                      D+F  CGS+DDA+ +FE M   +  +W+AMI A A +G+A +++L+FER
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M  E    +P+++TF+G+L+AC H G V+EGR+ F  M S FG++P  +HY  MVDL + 
Sbjct: 322 MRSEN--VQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSX 379

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG+L +A++F++++P     ++   LL AC    N D++++V + + E++ S+ G+YVI 
Sbjct: 380 AGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVIL 439

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S ++A  K W+    +R +M+++   K PGCS I +++
Sbjct: 440 SNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 37/423 (8%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
           A+ +++H     +N      +  + L+ KC S + + QI    + + I+  +F+  ++I+
Sbjct: 15  AETFTKHSKIDTVNT-----QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFV-AKLIN 68

Query: 65  L-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLG 114
                      +YA  LF  +S P+   FN M RG    + ++++ L+   L+ ++   G
Sbjct: 69  FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARG----YSRFTNPLEVFSLFVEILEDG 124

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           + PDN+T+P +  +CA   AL  G  +H    K+GLD++ +V  +LI MY  C  +DSAR
Sbjct: 125 ILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSAR 184

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            VFD I E  +V +N+MI+GY++     EA+ LF  M+ +   P+EITL+SVL SC  LG
Sbjct: 185 XVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLG 244

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L LGKW+  +  K+       + +ALIDM+ KCG+L  A  +F+ M  KD   W+AMI 
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQ 349
           AYA +G + +++++F RM+   V PD+IT +G+L+AC+  G ++ G+      V K+   
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364

Query: 350 RGLRH-----DIF--CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFER 401
             ++H     D+    G+++DA +  + +P++   + W  +++A +    +H  L L E+
Sbjct: 365 PSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACS----SHNNLDLAEK 420

Query: 402 MSK 404
           +S+
Sbjct: 421 VSE 423


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/547 (31%), Positives = 295/547 (53%), Gaps = 22/547 (4%)

Query: 31  LKKCPSTKTVQ---QIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNE 83
           L+ C  +  ++   QIH  +L    +  +   N L+   +       A+++F  +   + 
Sbjct: 167 LQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDI 226

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
             +N M+ G       YS +L+ +Y ++   LKPD  +   + ++   L  L +G  +H+
Sbjct: 227 VTWNSMLTGFIQN-GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHA 285

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K G D +  V ++LI MYA+C  +    + FD +  +DL+SW +  +GY++     +
Sbjct: 286 YAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQ 345

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+EL  +++ E    D   + S+L +C  L  L   K + G+ ++  +  +  + + +ID
Sbjct: 346 ALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIID 404

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           +YG+CG +  A R+F+++  KDVV+W +MI+ Y  NGL+N+A+ +F+ MK  G+ PD +T
Sbjct: 405 VYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVT 464

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGL---------RHDIF--CGSIDDALKVFEDMP 372
           L+ +LSA  S+  L  GK +  +  ++G            D++  CGS++DA K+F    
Sbjct: 465 LVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTK 524

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             N + W AMISA   +G    A+ LF RM  E     P+ +TF+ +L AC H+GLV+EG
Sbjct: 525 NRNLILWTAMISAYGMHGYGEAAVELFMRMKDE--KIIPDHITFLALLYACSHSGLVNEG 582

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           +   ++M   + L P  EHY+C+VDL  R   L EA+  V+ M  +    V  ALLGAC+
Sbjct: 583 KSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACR 642

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++ +   + LLE++  N GNYV+ S +FA    W D  ++R  M+  G++K PGC
Sbjct: 643 IHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGC 702

Query: 553 SWIGIDD 559
           SWI + +
Sbjct: 703 SWIEVGN 709



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 227/431 (52%), Gaps = 15/431 (3%)

Query: 50  NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEY-AFNVMIRGLTTAWQKYSHSLKLYY 108
           +F+   N L+       D N A  LF ++   N+  ++N +I   +      + +L L+ 
Sbjct: 91  SFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGM-CTEALCLFS 149

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           +M + G+  + +T+     +C +   +  G+ +H+++ K G   D +V+++L+ MY R G
Sbjct: 150 EMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFG 209

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
           K+  A  +F  +  +D+V+WNSM++G+ + G   EA+E F  ++  +  PD+++++S++ 
Sbjct: 210 KMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIV 269

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           + G LG L+ GK +  + +KN  D N  +G+ LIDMY KC  +    R FD M +KD+++
Sbjct: 270 ASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLIS 329

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           W      YAQN    +A+ L  +++  G++ D   +  +L AC  +  L   K +  Y  
Sbjct: 330 WTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTI 389

Query: 349 QRGLRHDIF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
           + GL   +           CG ID A+++FE +   + VSW +MIS    NG A++AL +
Sbjct: 390 RGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEV 449

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  M + G    P+ VT + +LSA      + +G+ +   +    G I +    + +VD+
Sbjct: 450 FSSMKETG--LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK-GFILEGSISNTLVDM 506

Query: 459 YARAGHLSEAW 469
           YAR G + +A+
Sbjct: 507 YARCGSVEDAY 517



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 193/366 (52%), Gaps = 17/366 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A ++F ++S  + + +N M+ G  +  +    +L++Y +M+ LG+  D++T+P +  +C 
Sbjct: 11  AEMIFDKMSERSIFTWNAMMGGYVSNGEALG-ALEMYREMRHLGVSFDSYTFPVLLKACG 69

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWN 189
            +  L  G  +H    K G D    V +SL+ +YA+C  ++ ARK+FD +  R D+VSWN
Sbjct: 70  IVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWN 129

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           S+IS YS  G   EA+ LF  M +   + +  T  + L +C D   + LG  +   ++K+
Sbjct: 130 SIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
              L+ Y+ +AL+ MY + G +  A  +F  +  KD+VTWN+M+T + QNGL +EA+  F
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF 249

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             ++ A + PD++++I ++ A   +G L  GK +  YA + G   +I            C
Sbjct: 250 YDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKC 309

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
             +    + F+ M   + +SW    +  A N    +AL L  ++  EG      D T IG
Sbjct: 310 CCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEG---MDVDATMIG 366

Query: 419 -VLSAC 423
            +L AC
Sbjct: 367 SILLAC 372



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 14/285 (4%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +CG +  A  +FD++ ER + +WN+M+ GY   G A  A+E++  MR      D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM- 281
              +L +CG + DL  G  + G  +K   D   ++ ++L+ +Y KC  +  AR++FD M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
           V  DVV+WN++I+AY+ NG+  EA+ LF+ M  AGV  +  T    L AC     + LG 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 342 WVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +     + G   D++            G + +A  +F ++   + V+WN+M++    NG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
              EAL  F  +  +    +P+ V+ I ++ A    G +  G+ +
Sbjct: 241 LYSEALEFFYDL--QNADLKPDQVSIISIIVASGRLGYLLNGKEI 283


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/443 (37%), Positives = 251/443 (56%), Gaps = 19/443 (4%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF----DEIRERDLVSWN 189
           AL     +H+ + K+GL  +  V     ++ +     D A         + R  D   +N
Sbjct: 41  ALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFN 100

Query: 190 SMISGYSKMGYAKE-AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           ++I  Y++ G++K+ A+ L+G M  +  LP++ T   VL +C  L  L LG+ V G VVK
Sbjct: 101 TLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVK 160

Query: 249 NKMDLNFYMGSALIDMYGKC-GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              D + ++ + ++ MY  C G +  AR+VFD M   D VTW+AMI  YA+ G S EA+ 
Sbjct: 161 FGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVA 220

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF- 357
           LF  M+ A V PD+IT++ +LSAC  +GAL+LGKW++ Y  +  +           D+F 
Sbjct: 221 LFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFA 280

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG I  ALK+F  M     VSW ++I  +A +GR  EA  LFE M+  G A  P+DV F
Sbjct: 281 KCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVA--PDDVAF 338

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           IG+LSAC H+GLV+ GR  F  M   + L+PK EHY CMVD+Y R G + EA +FV  MP
Sbjct: 339 IGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMP 398

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + + ++L  L+ AC+      + +++ +LL++ E  +  NYV+ S I+A    W+   K
Sbjct: 399 IEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTK 458

Query: 537 MRALMREKGVSKTPGCSWIGIDD 559
           +R +M  KG+ K PG + I ID+
Sbjct: 459 IREVMEVKGMKKVPGSTMIEIDN 481



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/408 (35%), Positives = 224/408 (54%), Gaps = 26/408 (6%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYA-----SL 73
           +P    +  L+LL+ C +   + QIHT +L   +     +L +   +    +A     S 
Sbjct: 24  NPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASF 83

Query: 74  LFHQISRPNEY---AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           LF   +    Y    FN +IR           +L LY  M    + P+ FTYPFV  +CA
Sbjct: 84  LFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACA 143

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC-GKLDSARKVFDEIRERDLVSWN 189
            L  LN G +VH SV K G D D HV ++++ MY+ C G ++SARKVFDE+ + D V+W+
Sbjct: 144 GLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWS 203

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI GY+++G + EAV LF  M+  E  PDEIT+VS+L +C DLG L LGKW+E ++ ++
Sbjct: 204 AMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERH 263

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           ++     + +ALIDM+ KCG +  A ++F AM  K +V+W ++I   A +G   EA  LF
Sbjct: 264 EIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLF 323

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIFC- 358
             M  +GV PD +  IG+LSAC+  G ++ G+      + KY     + H     D++C 
Sbjct: 324 EEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCR 383

Query: 359 -GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSK 404
            G + +AL+   +MP+  N V    ++SA     R H    L E+++K
Sbjct: 384 TGLVKEALEFVRNMPIEPNPVILRTLVSAC----RGHGEFKLGEKITK 427


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 290/570 (50%), Gaps = 43/570 (7%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L+ C +   ++   Q+H   L +       +    +D+     +   A +LF      
Sbjct: 286 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENL 345

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++N MI G +     +  +L L++++   GL  D  +   VF +CA +  L+ G+ +
Sbjct: 346 NRQSYNAMITGYSQEEHGFK-ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 404

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           +    K  L  D  V+++ I MY +C  L  A +VFDE+R RD VSWN++I+ + + G  
Sbjct: 405 YGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKG 464

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            E + LF  M      PDE T  S+L +C   G L  G  +   +VK+ M  N  +G +L
Sbjct: 465 YETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSL 523

Query: 262 IDMYGKCGALVPARRV----------------FDAMVNKDV----VTWNAMITAYAQNGL 301
           IDMY KCG +  A ++                 + M NK +    V+WN++I+ Y     
Sbjct: 524 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 583

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           S +A MLF RM   G+ PDK T   VL  CA++ +  LGK +     ++ L+ D++    
Sbjct: 584 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICST 643

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG + D+  +FE     + V+WNAMI   A +G+  EA+ LFERM  E    +
Sbjct: 644 LVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILEN--IK 701

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTFI +L AC H GL+D+G   F +M   +GL P+  HYS MVD+  ++G +  A +
Sbjct: 702 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 761

Query: 471 FVERMPEKVDEIVLGALLGACQ-KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
            +  MP + D+++   LLG C   + N +V++     LL ++  +S  Y + S ++A+  
Sbjct: 762 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 821

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           MW+  + +R  MR   + K PGCSW+ + D
Sbjct: 822 MWEKVSDLRRNMRGFKLKKEPGCSWVELKD 851



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/499 (25%), Positives = 239/499 (47%), Gaps = 52/499 (10%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           + K+C     ++   Q H  M+I+  +   F+L  ++ +    +DF  AS++F ++   +
Sbjct: 54  VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD 113

Query: 83  EYAFNVMIRGLTTAWQKYS------------------------------HSLKLYYQMKR 112
             ++N MI G + +   +                                S++++  M R
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
            G++ D  T+  +   C+ L   + G+ +H  V ++G D D   + +L+ MYA+  +   
Sbjct: 174 EGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVE 233

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           + +VF  I E++ VSW+++I+G  +      A++ F  M++      +    SVL SC  
Sbjct: 234 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 293

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L +L LG  +    +K+    +  + +A +DMY KC  +  A+ +FD   N +  ++NAM
Sbjct: 294 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAM 353

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           IT Y+Q     +A++LF+R+  +G+  D+I+L GV  ACA +  L  G  +   A +  L
Sbjct: 354 ITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSL 413

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             D+            C ++ +A +VF++M   + VSWNA+I+A   NG+ +E L LF  
Sbjct: 414 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 473

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M +      P++ TF  +L AC   G +  G  +   +  S G+   S     ++D+Y++
Sbjct: 474 MLR--SRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSK 529

Query: 462 AGHLSEAWDFVERMPEKVD 480
            G + EA     R  ++ +
Sbjct: 530 CGMIEEAEKIHSRFFQRAN 548



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 237/511 (46%), Gaps = 42/511 (8%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K F  +  +F  I   N  +++ +I G        S +LK + +M+++        Y  V
Sbjct: 229 KRFVESLRVFQGIPEKNSVSWSAIIAGCVQN-NLLSLALKFFKEMQKVNAGVSQSIYASV 287

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             SCA L  L  G  +H+   K     D  V  + + MYA+C  +  A+ +FD     + 
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 347

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            S+N+MI+GYS+  +  +A+ LF R+       DEI+L  V  +C  +  L  G  + G 
Sbjct: 348 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 407

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K+ + L+  + +A IDMYGKC AL  A RVFD M  +D V+WNA+I A+ QNG   E 
Sbjct: 408 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 467

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DI 356
           + LF  M  + + PD+ T   +L AC   G+L  G  +     + G+           D+
Sbjct: 468 LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 526

Query: 357 F--CGSIDDALKV----FEDMPVTNE----------------VSWNAMISALAFNGRAHE 394
           +  CG I++A K+    F+   V+                  VSWN++IS      ++ +
Sbjct: 527 YSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSED 586

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A +LF RM + G    P+  T+  VL  C +      G+++    +       +S+ Y C
Sbjct: 587 AQMLFTRMMEMG--ITPDKFTYATVLDTCANLASAGLGKQIH---AQVIKKELQSDVYIC 641

Query: 455 --MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE 511
             +VD+Y++ G L ++    E+   + D +   A++ G     K  +  Q   +++LE  
Sbjct: 642 STLVDMYSKCGDLHDSRLMFEKSLRR-DFVTWNAMICGYAHHGKGEEAIQLFERMILENI 700

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
             N   ++   +  A++ + D   +   +M+
Sbjct: 701 KPNHVTFISILRACAHMGLIDKGLEYFYMMK 731



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 186/415 (44%), Gaps = 48/415 (11%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           + FVF  CA   AL  G   H+ +   G      V + L+ +Y       SA  VFD++ 
Sbjct: 51  FSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMP 110

Query: 182 ERDLVSWNSMISGYSKM-------------------------------GYAKEAVELFGR 210
            RD+VSWN MI+GYSK                                G + +++E+F  
Sbjct: 111 LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 170

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           M  E    D  T   +L  C  L D  LG  + G VV+   D +    SAL+DMY K   
Sbjct: 171 MGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKR 230

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
            V + RVF  +  K+ V+W+A+I    QN L + A+  F  M+       +     VL +
Sbjct: 231 FVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRS 290

Query: 331 CASIGALDLGKWVDKYASQ---------RGLRHDIF--CGSIDDALKVFEDMPVTNEVSW 379
           CA++  L LG  +  +A +         R    D++  C ++ DA  +F++    N  S+
Sbjct: 291 CAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSY 350

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL- 438
           NAMI+  +      +ALLLF R+   G     ++++  GV  AC     + EG +++ L 
Sbjct: 351 NAMITGYSQEEHGFKALLLFHRLMSSGLGF--DEISLSGVFRACALVKGLSEGLQIYGLA 408

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           + SS  L     + +  +D+Y +   L+EA+   + M  + D +   A++ A ++
Sbjct: 409 IKSSLSLDVCVANAA--IDMYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQ 460


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 277/513 (53%), Gaps = 40/513 (7%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN---FTYPFVFISCANLLALNH 137
           P  +A+ +    +  +  ++ H++ L+ QM R  + P +    + P    SCA L     
Sbjct: 329 PPSWAYQIR---MAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTL 384

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARC---------------GKLDSA-----RKVF 177
             S+H+   + G   D   +++L+ +  +                G L+SA     RKVF
Sbjct: 385 AASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVF 444

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           DE+ ERD VSWN++I G ++    +EA+ +   M  + F+PD  TL +VL    +  D+ 
Sbjct: 445 DEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIK 504

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            G  V G+ +KN  D + ++GS+LIDMY  C  +  + +VFD+  + D V WN+M+  YA
Sbjct: 505 RGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYA 564

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           QNG   EA+ +F RM  AGV P  +T   ++ A  ++  L LGK +  Y  +     +IF
Sbjct: 565 QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIF 624

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CG++D A +VF  +   + VSW AMI   A +G   EA +LFERM  E 
Sbjct: 625 ISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM--EL 682

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
           G  +PN +TF+ VL+AC HAGLVD G + F+ MS+ +G +P  EH + + D   RAG L 
Sbjct: 683 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 742

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           EA++F+  M  K    V   LL AC+  KNT +++ V + + E+E  + G++VI S +++
Sbjct: 743 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 802

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
               W+++A++R  MR KG+ K P CSWI + +
Sbjct: 803 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKN 835



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 194/356 (54%), Gaps = 20/356 (5%)

Query: 65  LKDFNYASL--LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
           L+   Y S+  +F ++   +  ++N +I G     +++  +L +  +M R G  PD FT 
Sbjct: 432 LESAAYESMRKVFDEMLERDAVSWNTLILGCAEH-KRHQEALSMVREMWRDGFMPDTFTL 490

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             V    A    +  G+ VH    K G D D  V  SLI MYA C ++D + KVFD   +
Sbjct: 491 STVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSD 550

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
            D V WNSM++GY++ G  +EA+ +F RM +    P  +T  S++ + G+L  L LGK +
Sbjct: 551 CDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQL 610

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             ++++ + + N ++ S+LIDMY KCG +  ARRVF+ + + D+V+W AMI  YA +G +
Sbjct: 611 HAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPT 670

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRG----LRH--- 354
            EA +LF RM+   V P+ IT + VL+AC+  G +D G K+ +  ++Q G    L H   
Sbjct: 671 TEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAA 730

Query: 355 --DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKE 405
             D     G +D+A     +M +    S W+ ++ A     R H+  +L E ++K+
Sbjct: 731 LADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRAC----RVHKNTVLAEEVAKK 782


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 259/456 (56%), Gaps = 14/456 (3%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +P+ F +   F +C+ LL  + G  +H    K GL  D     SL  MYA+CG L+SAR 
Sbjct: 298 QPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESART 357

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF  I + DLV+WN++I+G++ +  AKE+   F +MR    +P+++T++S+L +C +   
Sbjct: 358 VFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVM 417

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMIT 294
           L  G  V  ++VK   +L+  + ++L+ MY KC  L  A +VF+ + NK D+V+WN ++T
Sbjct: 418 LNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLT 477

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           A  Q   + E + L   M  + + PD +TL  VL +   I + ++G  +  +  + GL  
Sbjct: 478 ACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNL 537

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           DI            CGS++ A K+F+ +   + +SW+++I   A  G   EA  LF  M 
Sbjct: 538 DISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTM- 596

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G   +PN++TF+G+L+AC H G+V+EG +L+  M   + + P  EH SCMVDL ARAG
Sbjct: 597 -RGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAG 655

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L  A DF+++MP   D +V   LL AC+   N +V +R  + +L+I+ SNS   V+   
Sbjct: 656 CLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCN 715

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I A+   W D A++R+ MR   V K PG SWI I D
Sbjct: 716 IHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKD 751



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 207/424 (48%), Gaps = 20/424 (4%)

Query: 100 YSHSLKLYYQMKRLGLKP-DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           +  +LK +   ++    P  + TY  +  +C++L +L HG  +H  +       D  + +
Sbjct: 78  HREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQN 137

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            +++MY +CG L  AR +FD +  +++VSW SMISGYS+ G    A+ L+ +M     +P
Sbjct: 138 HILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIP 197

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D  T  S++ SC  L D  L + +   V+K++   +    +ALI MY K   +  A  VF
Sbjct: 198 DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGAL 337
             ++ KD+++W +MI  ++Q G   EA+  F  M    V  P++       SAC+ +   
Sbjct: 258 SRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP 317

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           D G+ +     + GL  D+F           CG ++ A  VF  +   + V+WNA+I+  
Sbjct: 318 DCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGF 377

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGL 445
           A    A E+   F +M   G    PNDVT + +L AC    +++ G ++   ++   F L
Sbjct: 378 ASVSNAKESSSFFSQMRHTGLV--PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL 435

Query: 446 -IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
            IP       ++ +Y++  +L++A    E +  K D +    LL AC +Q       R+ 
Sbjct: 436 DIPVCNS---LLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 505 QLLL 508
           +L+ 
Sbjct: 493 KLMF 496


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/487 (34%), Positives = 275/487 (56%), Gaps = 18/487 (3%)

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           RP+    + M+    +A    +   +++ Q+ RLG       Y F +    ++ A    +
Sbjct: 146 RPSRITMSGMVMA-ASALGDRALGRQVHCQIMRLGFG----AYAFTWSPLVDMYAKMGLI 200

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
                VF   + ++  + +++IT   RC  ++ AR VF+ + +RD ++W +M++G ++ G
Sbjct: 201 GDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNG 260

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EA+++F RMR E    D+ T  S+L +CG L     GK +  + ++   D N ++GS
Sbjct: 261 LQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGS 320

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+DMY KC ++  A  VF  M  K++++W AMI  Y QNG   EA+ +F+ M+  G+ P
Sbjct: 321 ALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKP 380

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +  TL  V+S+CA++ +L+ G      A   GLR  I            CGSI+DA ++F
Sbjct: 381 NDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLF 440

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           ++MP  ++VS+ A++S  A  G+A E + LFE+M  +G   +PN VTFIGVLSAC  +GL
Sbjct: 441 DEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKG--VKPNGVTFIGVLSACSRSGL 498

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G   F  M    G++   +HY+CM+DLY+R+G L EA +F+ +MP   D I    LL
Sbjct: 499 VEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLL 558

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+ + + ++ +   + LL+ +  N  +YV+   + A+   W + A +R  MR++ V K
Sbjct: 559 SACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKK 618

Query: 549 TPGCSWI 555
            PGCSWI
Sbjct: 619 EPGCSWI 625



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 206/427 (48%), Gaps = 27/427 (6%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY 100
           +++  +M++  +   N ++  ++  K    A  +F  +   +   +  M+ GLT    + 
Sbjct: 204 KRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQ- 262

Query: 101 SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           S +L ++ +M+  G+  D +T+  +  +C  L A   G  +H+   +   D +  V  +L
Sbjct: 263 SEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSAL 322

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           + MY++C  +  A  VF  +  ++++SW +MI GY + G  +EAV +F  M+ +   P++
Sbjct: 323 VDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPND 382

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            TL SV+ SC +L  L  G       + + +     + SAL+ +YGKCG++  A R+FD 
Sbjct: 383 FTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDE 442

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M   D V++ A+++ YAQ G + E I LF +M   GV P+ +T IGVLSAC+  G ++ G
Sbjct: 443 MPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKG 502

Query: 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
                   Q            D  + + +D        +  MI   + +GR  EA     
Sbjct: 503 CSYFHSMQQ------------DHGIVLLDD-------HYTCMIDLYSRSGRLKEAEEFIR 543

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
           +M +      P+ + +  +LSAC   G ++ G+   + +  +    P S  Y  +  ++A
Sbjct: 544 QMPRC-----PDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPAS--YVLLCSMHA 596

Query: 461 RAGHLSE 467
             G  SE
Sbjct: 597 SKGEWSE 603



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 197/446 (44%), Gaps = 85/446 (19%)

Query: 155 HVSHSLITMYARCGKLDSARKVFD-------------------------------EIRER 183
           +V + L+T YAR G+L  AR++FD                                + +R
Sbjct: 46  YVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQR 105

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-------PDEITLVSVLGSCGDLGDL 236
           D VS+N++I+G+S  G    A   +  +  EE +       P  IT+  ++ +   LGD 
Sbjct: 106 DAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDR 165

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD----------------- 279
            LG+ V   +++       +  S L+DMY K G +  A+RVFD                 
Sbjct: 166 ALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGL 225

Query: 280 --------------AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
                         AMV++D +TW  M+T   QNGL +EA+ +F RM+  GV  D+ T  
Sbjct: 226 LRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFG 285

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
            +L+AC ++ A + GK +  Y  +     +IF           C SI  A  VF  M   
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           N +SW AMI     NG   EA+ +F  M  +G   +PND T   V+S+C +   ++EG +
Sbjct: 346 NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDG--IKPNDFTLGSVISSCANLASLEEGAQ 403

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQK 493
            F  M+   GL P     S +V LY + G + +A    + MP   D++   AL+ G  Q 
Sbjct: 404 -FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFH-DQVSYTALVSGYAQF 461

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYV 519
            K  +      ++LL+    N   ++
Sbjct: 462 GKAKETIDLFEKMLLKGVKPNGVTFI 487



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 151/321 (47%), Gaps = 41/321 (12%)

Query: 29  SLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L  C    +++  +QIH   +        F+   ++D+    +    A  +F +++  
Sbjct: 286 SILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI G          +++++ +M+  G+KP++FT   V  SCANL +L  G   
Sbjct: 346 NIISWTAMIVGYGQNGCG-EEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQF 404

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H      GL     VS +L+T+Y +CG ++ A ++FDE+   D VS+ +++SGY++ G A
Sbjct: 405 HCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKA 464

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KE ++LF +M  +   P+ +T + VL +C   G  ++ K    F   + M  +   G  L
Sbjct: 465 KETIDLFEKMLLKGVKPNGVTFIGVLSACSRSG--LVEKGCSYF---HSMQQDH--GIVL 517

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +D +  C                       MI  Y+++G   EA     +M      PD 
Sbjct: 518 LDDHYTC-----------------------MIDLYSRSGRLKEAEEFIRQMPRC---PDA 551

Query: 322 ITLIGVLSACASIGALDLGKW 342
           I    +LSAC   G +++GKW
Sbjct: 552 IGWATLLSACRLRGDMEIGKW 572


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/508 (33%), Positives = 284/508 (55%), Gaps = 34/508 (6%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N MI   +   +++  +L     M   G+KPD  T+  V  +C++L  L  G  +H+ 
Sbjct: 183 TWNSMISSFSQN-ERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAY 241

Query: 145 VFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
             +   + E+  V  +L+ MY  CG+++S R VFD + +R +  WN+MI+GY++  + ++
Sbjct: 242 ALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEK 301

Query: 204 AVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           A+ LF  M     L  +  T+ S++ +      +   + + G+V+K  ++ N Y+ +ALI
Sbjct: 302 ALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALI 361

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-------YA 315
           DMY + G +  ++R+FD+M ++D+V+WN +IT+Y   G S++A++L + M+       Y 
Sbjct: 362 DMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYD 421

Query: 316 G---------VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
           G           P+ ITL+ VL  CAS+ AL  GK +  YA +  L   +          
Sbjct: 422 GDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMY 481

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG---GAARPN 412
             CG ++ A +VF+ MP+ N ++WN +I A   +G+  E+L LFE M  EG   G  +P 
Sbjct: 482 AKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPT 541

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
           +VTFI + ++C H+G+VDEG  LF  M +  G+ P  +HY+C+VDL  RAG + EA+  V
Sbjct: 542 EVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLV 601

Query: 473 ERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
             MP   D++    +LLGAC+   N ++ +   + LL+++   + +YV+ S I+++  +W
Sbjct: 602 NTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLW 661

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGIDD 559
           D +  +R  M+  GV K PGCSWI   D
Sbjct: 662 DKAMNLRRRMKAMGVKKEPGCSWIEYGD 689



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 218/433 (50%), Gaps = 33/433 (7%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +I+  ++ ++N +I  L   ++++  ++K +  M   G +P +FT   + ++C+NL 
Sbjct: 69  VFDRITERDQVSWNSIISALCR-FEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 134 ---ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               L  G  +H   F+ G       +++L+ MYA+ G+LD A+ +     +RDLV+WNS
Sbjct: 128 KRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNS 186

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-N 249
           MIS +S+     EA+     M  E   PD +T  SVL +C  L  L  GK +  + ++ +
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTD 246

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  N ++GSAL+DMY  CG +   R VFD+++++ +  WNAMI  YAQ+    +A+MLF
Sbjct: 247 DVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLF 306

Query: 310 NRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
             M+  AG+  +  T+  ++ A      +   + +  Y  +RGL  + +           
Sbjct: 307 IEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSR 366

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK------------- 404
            G I  + ++F+ M   + VSWN +I++    GR+ +ALLL   M +             
Sbjct: 367 MGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYND 426

Query: 405 -EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +    +PN +T + VL  C     + +G+ +      +  L  +    S +VD+YA+ G
Sbjct: 427 EKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCG 485

Query: 464 HLSEAWDFVERMP 476
            L+ A    ++MP
Sbjct: 486 CLNLARRVFDQMP 498



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 182/386 (47%), Gaps = 28/386 (7%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS--HSLITMYARCGKLD 171
           G  PDNF +P V  + A +  L  G  +H+ VFK G      V+  ++L+ MY +CG L 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            A KVFD I ERD VSWNS+IS   +    + A++ F  M  E F P   TLVS+  +C 
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 232 DL---GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           +L     L LGK + G   + K     +  +AL+ MY K G L  A+ +     ++D+VT
Sbjct: 125 NLRKRDGLWLGKQIHGCCFR-KGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN+MI++++QN    EA+M    M   GV PD +T   VL AC+ +  L  GK +  YA 
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA- 242

Query: 349 QRGLRHD----------------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
              LR D                  CG ++    VF+ +       WNAMI+  A +   
Sbjct: 243 ---LRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHD 299

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            +AL+LF  M    G    N  T   ++ A V    +     +   +    GL       
Sbjct: 300 EKALMLFIEMEAAAG-LYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKR-GLETNRYLQ 357

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEK 478
           + ++D+Y+R G +  +    + M ++
Sbjct: 358 NALIDMYSRMGDIKTSKRIFDSMEDR 383



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSI 361
           +G +PD      VL A A I  L LGK +  +  + G              +++  CG +
Sbjct: 4   SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            DA KVF+ +   ++VSWN++ISAL        A+  F  M  EG    P+  T + +  
Sbjct: 64  GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEG--FEPSSFTLVSMAL 121

Query: 422 AC 423
           AC
Sbjct: 122 AC 123


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 277/513 (53%), Gaps = 40/513 (7%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN---FTYPFVFISCANLLALNH 137
           P  +A+ +    +  +  ++ H++ L+ QM R  + P +    + P    SCA L     
Sbjct: 12  PPSWAYQIR---MAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGLCTL 67

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARC---------------GKLDSA-----RKVF 177
             S+H+   + G   D   +++L+ +  +                G L+SA     RKVF
Sbjct: 68  AASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVF 127

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           DE+ ERD VSWN++I G ++    +EA+ +   M  + F+PD  TL +VL    +  D+ 
Sbjct: 128 DEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIK 187

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            G  V G+ +KN  D + ++GS+LIDMY  C  +  + +VFD+  + D V WN+M+  YA
Sbjct: 188 RGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYA 247

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           QNG   EA+ +F RM  AGV P  +T   ++ A  ++  L LGK +  Y  +     +IF
Sbjct: 248 QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIF 307

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CG++D A +VF  +   + VSW AMI   A +G   EA +LFERM  E 
Sbjct: 308 ISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM--EL 365

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
           G  +PN +TF+ VL+AC HAGLVD G + F+ MS+ +G +P  EH + + D   RAG L 
Sbjct: 366 GNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLD 425

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           EA++F+  M  K    V   LL AC+  KNT +++ V + + E+E  + G++VI S +++
Sbjct: 426 EAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYS 485

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
               W+++A++R  MR KG+ K P CSWI + +
Sbjct: 486 ASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKN 518



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 189/345 (54%), Gaps = 18/345 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++   +  ++N +I G     +++  +L +  +M R G  PD FT   V    A   
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEH-KRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECA 184

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G+ VH    K G D D  V  SLI MYA C ++D + KVFD   + D V WNSM++
Sbjct: 185 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLA 244

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++ G  +EA+ +F RM +    P  +T  S++ + G+L  L LGK +  ++++ + + 
Sbjct: 245 GYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFND 304

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ S+LIDMY KCG +  ARRVF+ + + D+V+W AMI  YA +G + EA +LF RM+
Sbjct: 305 NIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERME 364

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRG----LRH-----DIF--CGSI 361
              V P+ IT + VL+AC+  G +D G K+ +  ++Q G    L H     D     G +
Sbjct: 365 LGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDL 424

Query: 362 DDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKE 405
           D+A     +M +    S W+ ++ A     R H+  +L E ++K+
Sbjct: 425 DEAYNFISEMKIKPTSSVWSTLLRAC----RVHKNTVLAEEVAKK 465


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 291/537 (54%), Gaps = 26/537 (4%)

Query: 34  CPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL--LFHQISRPNEYAFNVMIR 91
           C S   + QIH +++   +++   L+   I     + +    +F ++  P  Y +N +I+
Sbjct: 20  CKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSLSYSSSVFERVPYPGTYLWNHLIK 79

Query: 92  GLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
           G +  +  +  ++ L  +M R G  +PD +T+P V   C+N      G +VH  V +IG 
Sbjct: 80  GYSNKFL-FFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGF 138

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
           D+D  +  S +  Y +C  L SARKVF E+ ER++VSW ++I  Y K G  +EA  +F  
Sbjct: 139 DKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDL 198

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           M E        T  +++      GDLV  + +  F    K D+  Y  +++ID Y K G 
Sbjct: 199 MPERNLG----TWNALVDGLVKSGDLVNARKL--FDEMPKRDIISY--TSMIDGYAKGGD 250

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +V AR +F+     DV  W+A+I  YAQNG  NEA  +F+ M    V PD+  ++G++SA
Sbjct: 251 MVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSA 310

Query: 331 CASIGALDLGKWVDKYASQ---RGLRHDIF---------CGSIDDALKVFEDMPVTNEVS 378
           C+ +G  +L + VD Y  Q   +   H +          CG +D A K+FE+MP  + VS
Sbjct: 311 CSQMGCFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVS 370

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           + +M+  +A +G   EA+ LFE+M  EG    P++V F  +L  C  + LV+EG R F+L
Sbjct: 371 YCSMMEGMAIHGCGSEAVRLFEKMVDEGIV--PDEVAFTVILKVCSQSRLVEEGLRYFEL 428

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M   + ++   +HYSC+V+L +R G L EA++ ++ MP +      G+LLG C    NT+
Sbjct: 429 MRKEYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTE 488

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +++ V + L E+E  ++G+YV+ S I+A L  W D A +R  M E G+ K  G SWI
Sbjct: 489 IAEVVARQLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRSWI 545


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/456 (36%), Positives = 258/456 (56%), Gaps = 14/456 (3%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +P+ F +   F +C+ LL  + G  +H    K GL  D     SL  MYA+CG L+SAR 
Sbjct: 298 QPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESART 357

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF  I + DLV+WN++I+G++ +  AKE+   F +MR    +P+++T++S+L +C +   
Sbjct: 358 VFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVM 417

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMIT 294
           L  G  V  ++VK   +L+  + ++L+ MY KC  L  A +VF+ + NK D+V+WN ++T
Sbjct: 418 LNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLT 477

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           A  Q   + E + L   M  + + PD +TL  VL +   I + ++G  +  +  + GL  
Sbjct: 478 ACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNL 537

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           DI            CGS++ A K+F+ +   + +SW+++I   A  G   EA  LF  M 
Sbjct: 538 DISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTM- 596

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G   +PN++TF+G+L+AC H G+V+EG +L+  M   + + P  EH SCMVDL ARAG
Sbjct: 597 -RGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAG 655

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L  A DF+ +MP   D +V   LL AC+   N +V +R  + +L+I+ SNS   V+   
Sbjct: 656 CLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCN 715

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I A+   W D A++R+ MR   V K PG SWI I D
Sbjct: 716 IHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKD 751



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 207/424 (48%), Gaps = 20/424 (4%)

Query: 100 YSHSLKLYYQMKRLGLKP-DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           +  +LK +   ++    P  + TY  +  +C++L +L HG  +H  +       D  + +
Sbjct: 78  HREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQN 137

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            +++MY +CG L  AR +FD +  +++VSW SMISGYS+ G    A+ L+ +M     +P
Sbjct: 138 HILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIP 197

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D  T  S++ SC  L D  L + +   V+K++   +    +ALI MY K   +  A  VF
Sbjct: 198 DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGAL 337
             ++ KD+++W +MI  ++Q G   EA+  F  M    V  P++       SAC+ +   
Sbjct: 258 SRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP 317

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           D G+ +     + GL  D+F           CG ++ A  VF  +   + V+WNA+I+  
Sbjct: 318 DCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGF 377

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGL 445
           A    A E+   F +M   G    PNDVT + +L AC    +++ G ++   ++   F L
Sbjct: 378 ASVSNAKESSSFFSQMRHTGLV--PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL 435

Query: 446 -IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
            IP       ++ +Y++  +L++A    E +  K D +    LL AC +Q       R+ 
Sbjct: 436 DIPVCNS---LLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 505 QLLL 508
           +L+ 
Sbjct: 493 KLMF 496


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 263/466 (56%), Gaps = 15/466 (3%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L L   M+  G +    T+  V    A+   L  G  +H  + + G   D HV  SLI +
Sbjct: 245 LLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVV 304

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y + GK+D A ++F+   ++D+V W +MISG  + G A +A+ +F +M +    P   T+
Sbjct: 305 YLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATM 364

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
            SV+ +C  LG   LG  + G++++ ++ L+    ++L+ MY KCG L  +  VFD M  
Sbjct: 365 ASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNR 424

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +D+V+WNAM+T YAQNG   EA+ LFN M+     PD IT++ +L  CAS G L LGKW+
Sbjct: 425 RDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWI 484

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             +  + GLR  I            CG +D A + F  MP  + VSW+A+I    ++G+ 
Sbjct: 485 HSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKG 544

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
             AL  + +  + G   +PN V F+ VLS+C H GLV++G  +++ M+  FG+ P  EH+
Sbjct: 545 EAALRFYSKFLESG--MKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHH 602

Query: 453 SCMVDLYARAGHLSEAWD-FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           +C+VDL +RAG + EA++ + ++ P+ V + VLG +L AC+   N ++   +   +L + 
Sbjct: 603 ACVVDLLSRAGRVEEAYNVYKKKFPDPVLD-VLGIILDACRANGNNELGDTIANDILMLR 661

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
             ++GN+V  +  +A++  W++  +    MR  G+ K PG S+I I
Sbjct: 662 PMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFIDI 707



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 235/466 (50%), Gaps = 25/466 (5%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL-KDFNYASL---LFHQISRP 81
           SLLK C           +H ++L++ +    ++   +I+    F +A +   +F  +   
Sbjct: 66  SLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPER 125

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +  +I G  +   +   +  L+ +M+R G++P + T   +    + L    H   +
Sbjct: 126 NVVPWTTII-GCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSEL---AHVQCL 181

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H      G   D ++S+S++ +Y +CG ++ +RK+FD +  RDLVSWNS+IS Y+++G  
Sbjct: 182 HGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNI 241

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            E + L   MR + F     T  SVL      G+L LG+ + G +++    L+ ++ ++L
Sbjct: 242 CEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSL 301

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I +Y K G +  A R+F+   +KDVV W AMI+   QNG +++A+ +F +M   GV P  
Sbjct: 302 IVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPST 361

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T+  V++ACA +G+ +LG  +  Y  ++ L  D+            CG +D +  VF+ 
Sbjct: 362 ATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDM 421

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWNAM++  A NG   EAL LF  M  +     P+ +T + +L  C   G + 
Sbjct: 422 MNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDN--QTPDSITIVSLLQGCASTGQLH 479

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
            G+ +   +  + GL P     + +VD+Y + G L  A     +MP
Sbjct: 480 LGKWIHSFVIRN-GLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMP 524



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 155/267 (58%), Gaps = 1/267 (0%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F + S  +   +  MI GL         +L ++ QM + G+KP   T   V  +CA L 
Sbjct: 317 MFERSSDKDVVLWTAMISGLVQNGSA-DKALAVFRQMLKFGVKPSTATMASVITACAQLG 375

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           + N G S+   + +  L  D    +SL+TMYA+CG LD +  VFD +  RDLVSWN+M++
Sbjct: 376 SYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVT 435

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++ GY  EA+ LF  MR +   PD IT+VS+L  C   G L LGKW+  FV++N +  
Sbjct: 436 GYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRP 495

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + ++L+DMY KCG L  A+R F+ M + D+V+W+A+I  Y  +G    A+  +++  
Sbjct: 496 CILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFL 555

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG 340
            +G+ P+ +  + VLS+C+  G ++ G
Sbjct: 556 ESGMKPNHVIFLSVLSSCSHNGLVEQG 582



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 197/382 (51%), Gaps = 29/382 (7%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           L  Y  M +  +  D +T+P +  +C+ L   + G+++H  +   GL  D +++ SLI  
Sbjct: 46  LATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINF 105

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           YA+ G  D ARKVFD + ER++V W ++I  YS+ G   EA  LF  MR +   P  +T+
Sbjct: 106 YAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTV 165

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
           +S+L    +L  +   + + G  +      +  + ++++++YGKCG +  +R++FD M +
Sbjct: 166 LSLLFGVSELAHV---QCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDH 222

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +D+V+WN++I+AYAQ G   E ++L   M+  G      T   VLS  AS G L LG+ +
Sbjct: 223 RDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCL 282

Query: 344 DKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
                + G   D              G ID A ++FE     + V W AMIS L  NG A
Sbjct: 283 HGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSA 342

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-- 450
            +AL +F +M K G   +P+  T   V++AC   G        ++L +S  G I + E  
Sbjct: 343 DKALAVFRQMLKFG--VKPSTATMASVITACAQLG-------SYNLGTSILGYILRQELP 393

Query: 451 ----HYSCMVDLYARAGHLSEA 468
                 + +V +YA+ GHL ++
Sbjct: 394 LDVATQNSLVTMYAKCGHLDQS 415



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 162/332 (48%), Gaps = 14/332 (4%)

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           S N+ I+ +S  G   + +  +  M +     D  T  S+L +C  L    LG  +   +
Sbjct: 28  SVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRI 87

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           + + + L+ Y+ S+LI+ Y K G    AR+VFD M  ++VV W  +I  Y++ G   EA 
Sbjct: 88  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAF 147

Query: 307 MLFNRMKYAGVNPDKITLIGVL---SACASIGALDLGKWVDKYASQRGLRHDIF-----C 358
            LF+ M+  G+ P  +T++ +L   S  A +  L     +  + S   L + +      C
Sbjct: 148 SLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKC 207

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G+I+ + K+F+ M   + VSWN++ISA A  G   E LLL + M  +G  A P   TF  
Sbjct: 208 GNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQ--TFGS 265

Query: 419 VLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           VLS     G +  GR L   ++ + F L    E  + ++ +Y + G +  A+   ER  +
Sbjct: 266 VLSVAASRGELKLGRCLHGQILRAGFYLDAHVE--TSLIVVYLKGGKIDIAFRMFERSSD 323

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           K D ++  A++    +  + D +  V + +L+
Sbjct: 324 K-DVVLWTAMISGLVQNGSADKALAVFRQMLK 354



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           ++SLL+ C ST  +   + IH+ ++ N ++    +   ++D+     D + A   F+Q+ 
Sbjct: 465 IVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMP 524

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             +  +++ +I G      K   +L+ Y +    G+KP++  +  V  SC++   +  G+
Sbjct: 525 SHDLVSWSAIIVGYGYH-GKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGL 583

Query: 140 SVHSSV---FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           +++ S+   F I  D + H    ++ + +R G+++ A  V+ +
Sbjct: 584 NIYESMTKDFGIAPDLEHHA--CVVDLLSRAGRVEEAYNVYKK 624


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 183/604 (30%), Positives = 303/604 (50%), Gaps = 70/604 (11%)

Query: 15  TELNDP-SLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKDFNY 70
           T  ND   L+ + +  LL  C  + ++   +Q+H  ++ + + + +FL+ +++      Y
Sbjct: 69  TSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMF----Y 124

Query: 71  ASLLF----------HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
           +SL F            + RP  +  N++I       + Y  ++  Y QM   G++PDNF
Sbjct: 125 SSLEFLPEAHTLVETSNLFRPCSW--NILITSYVKH-KLYEAAILAYKQMVSKGVRPDNF 181

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+P +  +C     L  G+ VH S+          V ++LI+MY RCG++D+AR +FD +
Sbjct: 182 TFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNM 241

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELF-------------------------------- 208
            ERD VSWNSMIS YS  G  +EA ELF                                
Sbjct: 242 LERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQAL 301

Query: 209 ---GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
               +MR      D++ ++  LG+C  +G + LGK + GF +++   +   + +AL+ MY
Sbjct: 302 KLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMY 361

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            +C  +  A  +F    +K  +TWN+M++     G   EA+ LF  +   GV PD +T  
Sbjct: 362 ARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFA 421

Query: 326 GVLSACASIGALDLGKWVDKYASQ-RGLRHDIF-----------CGSIDDALKVFEDMPV 373
            +L  CA +  L  G+    Y ++ R  R  +             G + +A ++F  +  
Sbjct: 422 SILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSK 481

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            +EV++ ++I+     G   +A+ LFE M +     +P+ +T I VLSAC H+GLV++  
Sbjct: 482 KDEVTYTSLIAGYGMQGEGGKAVRLFEEMKR--FQIKPDHITMIAVLSACSHSGLVNQAE 539

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            LF  M S  GL P+ EHY+CM DL+ R G L++A + + RMP +    +   L+GAC  
Sbjct: 540 LLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCI 599

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             N D+ +   + LLE+   +SG YV+ + ++A    W   A++R LMR+ GV+K PGCS
Sbjct: 600 HGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCS 659

Query: 554 WIGI 557
           W+ +
Sbjct: 660 WVDV 663


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 265/472 (56%), Gaps = 16/472 (3%)

Query: 98  QKYSH--SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
           + Y H  SL L+ QM+ +G +P+NFT      SC  L A   G SVH    K+  D D +
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V  +L+ +Y + G++  A++ F+E+ + DL+ W+ MIS Y++   +KEA+ELF RMR+  
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301

Query: 216 FL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
            + P+  T  SVL +C  L  L LG  +   V+K  +D N ++ +AL+D+Y KCG +  +
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            ++F     K+ V WN +I  Y Q G   +A+ LF+ M    + P ++T   VL A AS+
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
            AL+ G+ +     +     D             CG IDDA   F+ M   +EVSWNA+I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
              + +G   EAL LF+ M +    ++PN +TF+GVLSAC +AGL+D+GR  F  M   +
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSN--SKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDY 539

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           G+ P  EHY+CMV L  R+G   EA   +  +P +   +V  ALLGAC   KN D+ +  
Sbjct: 540 GIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVC 599

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            Q +LE+E  +   +V+ S ++A  K WD+ A +R  M++K V K PG SW+
Sbjct: 600 AQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWV 651



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 235/449 (52%), Gaps = 25/449 (5%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL   +       AS LF ++   N  +F  + +G + + Q +  + +L  ++ R G 
Sbjct: 42  NILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQ-FQRARRLLLRLFREGY 100

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           + + F +  +     ++   +  +SVH+ V+K+G   D  V  +LI  Y+ CG +D+AR+
Sbjct: 101 EVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQ 160

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD I  +D+VSW  M++ Y++    ++++ LF +MR   + P+  T+ + L SC  L  
Sbjct: 161 VFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEA 220

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
             +GK V G  +K   D + Y+G AL+++Y K G +  A++ F+ M   D++ W+ MI+ 
Sbjct: 221 FKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISR 280

Query: 296 YAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           YAQ+  S EA+ LF RM+ +  V P+  T   VL ACAS+  L+LG  +     + GL  
Sbjct: 281 YAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDS 340

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           ++F           CG I++++K+F      NEV+WN +I      G   +AL LF  M 
Sbjct: 341 NVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNML 400

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL----MSSSFGLIPKSEHYSCMVDLY 459
             G   +P +VT+  VL A      ++ GR++  L    M +   ++  S     ++D+Y
Sbjct: 401 --GLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANS-----LIDMY 453

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           A+ G + +A    ++M +K DE+   AL+
Sbjct: 454 AKCGRIDDARLTFDKM-DKQDEVSWNALI 481



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 190/330 (57%), Gaps = 17/330 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISC 129
           A   F ++ + +   +++MI     +  K   +L+L+ +M++  +  P+NFT+  V  +C
Sbjct: 259 AQQFFEEMPKDDLIPWSLMISRYAQS-DKSKEALELFCRMRQSSVVVPNNFTFASVLQAC 317

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A+L+ LN G  +HS V K+GLD +  VS++L+ +YA+CG+++++ K+F    E++ V+WN
Sbjct: 318 ASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           ++I GY ++G  ++A+ LF  M   +  P E+T  SVL +   L  L  G+ +    +K 
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             + +  + ++LIDMY KCG +  AR  FD M  +D V+WNA+I  Y+ +GL  EA+ LF
Sbjct: 438 MYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLF 497

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHDIFC------ 358
           + M+ +   P+K+T +GVLSAC++ G LD G+      +  Y  +  + H   C      
Sbjct: 498 DMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEH-YTCMVWLLG 556

Query: 359 --GSIDDALKVFEDMPVTNEV-SWNAMISA 385
             G  D+A+K+  ++P    V  W A++ A
Sbjct: 557 RSGQFDEAVKLIGEIPFQPSVMVWRALLGA 586



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 177/357 (49%), Gaps = 19/357 (5%)

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
           N G S+H  + K G   D    + L+  Y   G L+ A K+FDE+   + VS+ ++  G+
Sbjct: 20  NAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGF 79

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEI---TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           S+    + A  L  R+  E +  ++    TL+ +L S  DL D  L   V  +V K    
Sbjct: 80  SRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSM-DLADTCLS--VHAYVYKLGHQ 136

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            + ++G+ALID Y  CG +  AR+VFD +  KD+V+W  M+  YA+N    ++++LF +M
Sbjct: 137 ADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQM 196

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
           +  G  P+  T+   L +C  + A  +GK V   A +     D++            G I
Sbjct: 197 RIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEI 256

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            +A + FE+MP  + + W+ MIS  A + ++ EAL LF RM ++     PN+ TF  VL 
Sbjct: 257 AEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRM-RQSSVVVPNNFTFASVLQ 315

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           AC    L++ G ++   +    GL       + ++D+YA+ G +  +        EK
Sbjct: 316 ACASLVLLNLGNQIHSCV-LKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEK 371


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 279/507 (55%), Gaps = 17/507 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFV 125
           D   A  LF ++   +  +++VMI G     +    +L+L+ +M     ++ D  T   V
Sbjct: 199 DMERAEELFDEMCERDVISWSVMIGGYVQTGEA-KMALQLFLEMTSNASIELDGITMVSV 257

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +CAN   ++ G SVH  V   GLD D  V +S+I MY++C   +SA K F+E+  R+ 
Sbjct: 258 LKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNT 317

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWNS+ISG  +     EA+ LF  M +  F  DE+TLV++L SC    D    K++   
Sbjct: 318 VSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSI 377

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V++   +LN ++ ++LID Y KC  +  A ++FD +  KD V+W+AMI  +   G  +EA
Sbjct: 378 VIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEA 437

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           I LF  M  A   P+ +T++ +L A +    L   KW    A +RGL  ++         
Sbjct: 438 IALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDM 497

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG I  + K F+ +P  N VSW AMI+A   NG A +AL L   M   G   +PN V
Sbjct: 498 YAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHG--LKPNVV 555

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T + VLSAC H GLV+EG   F+ M    G+ P  EHYSCMVD+ +RAG L+ A + +E+
Sbjct: 556 TTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEK 615

Query: 475 MPEKVDE--IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           MPE++ +   + GALL AC+   N+ +       +LE+E  +S  Y ++S ++A   +W 
Sbjct: 616 MPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWA 675

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           D+A+MR L++ +GV    G S + ++D
Sbjct: 676 DAARMRWLVKARGVRVVAGYSLVHVED 702



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 224/465 (48%), Gaps = 40/465 (8%)

Query: 81  PNEYAFNVMIRGLTT-AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           P    +N+ I+  T   W     +   Y+QMK+ G +  + T     +   + L + HG 
Sbjct: 10  PKLPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPVRHGK 69

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H+S+ K G D      +S++  Y + G LDSA  VFD +R RD VSWN MI G+   G
Sbjct: 70  SIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRG 129

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            + + +  F + R   F P+  TLV  + +C  LG +  G  + G+++++       + +
Sbjct: 130 ASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQN 189

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY-AGVN 318
           +L+ MY     +  A  +FD M  +DV++W+ MI  Y Q G +  A+ LF  M   A + 
Sbjct: 190 SLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIE 248

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--------IDD---ALKV 367
            D IT++ VL ACA+ G + +G+ V      RGL +D+F G+         DD   A K 
Sbjct: 249 LDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKA 308

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC---- 423
           F +MP  N VSWN++IS L    +  EAL LF  M K G   R ++VT + +L +C    
Sbjct: 309 FNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAG--FRADEVTLVNLLQSCKYFV 366

Query: 424 -------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
                  +H+ ++  G  L + + +S            ++D Y++   +  AW   +R+ 
Sbjct: 367 DPFQCKFIHSIVIRWGYELNEFVINS------------LIDAYSKCDLIELAWKLFDRLK 414

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            K D +   A++         D +  + Q + + +   +G  ++S
Sbjct: 415 TK-DTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILS 458


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/564 (33%), Positives = 303/564 (53%), Gaps = 40/564 (7%)

Query: 25  EKLLSLLKKCPSTKTVQ---QIHTQMLI-NFIQKPNFLLIR-IIDL----KDFNYASLLF 75
           E  + LLK    TK ++    IH  ++I N   K N + +  +I+L         A +LF
Sbjct: 26  EHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILF 85

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHS------LKLYYQMKRLG-LKPDNFTYPFVFIS 128
             + + N  ++  ++ G       Y H+      L+L+  M  +  ++P+ + +  +  S
Sbjct: 86  DGMRKRNVVSWGALMAG-------YFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISS 138

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C++   +  G   H    K GL    +V ++LI MY+R   +  A  V+ E+   D+ S+
Sbjct: 139 CSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSY 198

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N +I+G  + GY  EA+E+  RM +E  + D +T V+  G C  L DL LG  V   + +
Sbjct: 199 NIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFR 258

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              + + ++ SA+IDMYGKCG ++ AR+VF+ +  K+VV+W A++ AY+QNG   EA+  
Sbjct: 259 TGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNF 318

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F  M+  G+ P++ T   +L++CA I AL  GK +     + G    I            
Sbjct: 319 FPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSK 378

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM--SKEGGAARPNDVT 415
            GSI+ A KVF +M   + ++W+AMI  L+ +G   EAL++F+ M  +KE     P+ VT
Sbjct: 379 SGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKEC----PHYVT 434

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+GVLSAC H G V EG    + +    G+ P  EHY+C+V L  +AG L EA +F++  
Sbjct: 435 FVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKST 494

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P K D +    LL AC   +N  + ++V +L+L+++  + G Y++ S ++A  K WD   
Sbjct: 495 PVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVV 554

Query: 536 KMRALMREKGVSKTPGCSWIGIDD 559
           K+R LMRE+ V K PG SWI I +
Sbjct: 555 KIRKLMRERNVKKEPGASWIEIRN 578


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/536 (34%), Positives = 278/536 (51%), Gaps = 31/536 (5%)

Query: 36  STKTVQQIHTQMLINFIQKPNFLLIRIIDL------KDFNYASLLFHQISRPNEYAFNVM 89
           + + V+Q+H   L   I    F+  R++ L       D  YA  +F +I R +   +N +
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 90  IRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           I+       ++SH  + L++++    L PDNFT P V   CA L  +  G  +H    KI
Sbjct: 85  IKCYVE--NQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKI 141

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G   D  V  SL+ MY++CG++D ARKVFD + ++D+V WNS+I GY++ G    A++LF
Sbjct: 142 GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF 201

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             M E +     + LV  L  CG +      K  +    +N +  N     A+I+ Y K 
Sbjct: 202 EEMPERDAFSWTV-LVDGLSKCGKVESAR--KLFDQMPCRNLVSWN-----AMINGYMKS 253

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G    A  +F  M   D+VTWN MI  Y  NG   +A+ +F  M   G  P   TL+ VL
Sbjct: 254 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 313

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
           SA + +  L  G+W+  Y  + G   D             CG I+ AL VF  +      
Sbjct: 314 SAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVG 373

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
            W A+I  L  +G A+ AL LF  M K G   +PN + FIGVL+AC HAGLVD+GR+ FD
Sbjct: 374 HWTAIIVGLGIHGMANHALALFLEMCKTG--LKPNAIIFIGVLNACNHAGLVDDGRQYFD 431

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
           +M + + + P  EHY C+VD+  RAGHL EA + +E MP   ++++  +LLG  +     
Sbjct: 432 MMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKI 491

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
           D+ +   Q ++E+     G Y++ S ++A   MW+  + +R +M ++G  K PGCS
Sbjct: 492 DIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 547


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 279/507 (55%), Gaps = 17/507 (3%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFV 125
           D   A  LF ++   +  +++VMI G     +    +L+L+ +M     ++ D  T   V
Sbjct: 185 DMERAEELFDEMCERDVISWSVMIGGYVQTGEA-KMALQLFLEMTSNASIELDGITMVSV 243

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +CAN   ++ G SVH  V   GLD D  V +S+I MY++C   +SA K F+E+  R+ 
Sbjct: 244 LKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNT 303

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWNS+ISG  +     EA+ LF  M +  F  DE+TLV++L SC    D    K++   
Sbjct: 304 VSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSI 363

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V++   +LN ++ ++LID Y KC  +  A ++FD +  KD V+W+AMI  +   G  +EA
Sbjct: 364 VIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEA 423

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           I LF  M  A   P+ +T++ +L A +    L   KW    A +RGL  ++         
Sbjct: 424 IALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDM 483

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG I  + K F+ +P  N VSW AMI+A   NG A +AL L   M   G   +PN V
Sbjct: 484 YAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHG--LKPNVV 541

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T + VLSAC H GLV+EG   F+ M    G+ P  EHYSCMVD+ +RAG L+ A + +E+
Sbjct: 542 TTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEK 601

Query: 475 MPEKVDE--IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           MPE++ +   + GALL AC+   N+ +       +LE+E  +S  Y ++S ++A   +W 
Sbjct: 602 MPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWA 661

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           D+A+MR L++ +GV    G S + ++D
Sbjct: 662 DAARMRWLVKARGVRVVAGYSLVHVED 688



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 208/448 (46%), Gaps = 53/448 (11%)

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
           W     +   Y+QMK+ G +  + T             L H +    S    G D     
Sbjct: 27  WWDSWEACSRYHQMKKAGAQLTDPT-------------LVHSILKACSSLP-GFDSLTST 72

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
            +S++  Y + G LDSA  VFD +R RD VSWN MI G+   G + + +  F + R   F
Sbjct: 73  GNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAF 132

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            P+  TLV  + +C  LG +  G  + G+++++       + ++L+ MY     +  A  
Sbjct: 133 EPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEE 191

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY-AGVNPDKITLIGVLSACASIG 335
           +FD M  +DV++W+ MI  Y Q G +  A+ LF  M   A +  D IT++ VL ACA+ G
Sbjct: 192 LFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTG 251

Query: 336 ALDLGKWVDKYASQRGLRHDIFCGS--------IDD---ALKVFEDMPVTNEVSWNAMIS 384
            + +G+ V      RGL +D+F G+         DD   A K F +MP  N VSWN++IS
Sbjct: 252 DISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIIS 311

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----------VHAGLVDEGR 433
            L    +  EAL LF  M K G   R ++VT + +L +C           +H+ ++  G 
Sbjct: 312 GLVRTEKHSEALSLFYSMGKAG--FRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY 369

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
            L + + +S            ++D Y++   +  AW   +R+  K D +   A++     
Sbjct: 370 ELNEFVINS------------LIDAYSKCDLIELAWKLFDRLKTK-DTVSWSAMIAGFNH 416

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVIS 521
               D +  + Q + + +   +G  ++S
Sbjct: 417 CGKPDEAIALFQEMNQAQEKPNGVTILS 444


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/498 (33%), Positives = 279/498 (56%), Gaps = 14/498 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F+++       +N +I         Y  +L++Y QMK   +  D+FT   V  S +
Sbjct: 295 AEKVFNEVPDKEIELWNALISAYVGNGYAYD-ALRIYKQMKLCTVLSDSFTILNVLTSSS 353

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                + G  +H+ + K  L     +  +L+TMY++ G  + A  +F  ++ERD+V+W S
Sbjct: 354 MAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGS 413

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +ISG+ +    KEA++ F  M  +   PD   + S++ +C  L  + LG  + GFV+K+ 
Sbjct: 414 VISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSG 473

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           + L+ ++ S+L+DMY K G    A  +F  M  K++V WN++I+ Y +N L + +I LF+
Sbjct: 474 LQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFS 533

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCG 359
           ++    + PD ++   VL+A +S+ AL  GK V  Y  +  +  D           I CG
Sbjct: 534 QVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCG 593

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +  A  +FE +   N V+WN+MI     +G   +A+ LF+ M   G   +P+DVTF+ +
Sbjct: 594 LLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSG--IKPDDVTFLSL 651

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LS+C H+GL++EG  LF++M   FG+ P+ EHY  +VDLY RAG L +A+ FV+ MP + 
Sbjct: 652 LSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEP 711

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D  +  +LL +C+   N ++ + V   LL +E S   NYV    ++   ++WD +A +RA
Sbjct: 712 DRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRA 771

Query: 540 LMREKGVSKTPGCSWIGI 557
            M+EKG+ KTPGCSWI +
Sbjct: 772 SMKEKGLKKTPGCSWIEV 789



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 230/460 (50%), Gaps = 26/460 (5%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQIS-RPNEYAFNVMIRG 92
           K  +QIH+ ++ N +    FL   +ID          A  LF ++  R N  A+NVMI G
Sbjct: 156 KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGG 215

Query: 93  L--TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
                 W+   +SL+ Y   K   +K  + ++     +C     ++ G  VH    K+G 
Sbjct: 216 FGENGLWE---NSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGF 272

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
           ++D +V  SL+TMY +C  ++SA KVF+E+ ++++  WN++IS Y   GYA +A+ ++ +
Sbjct: 273 EDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQ 332

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           M+    L D  T+++VL S    G   LG+ +   +VK  +  +  + SAL+ MY K G 
Sbjct: 333 MKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGD 392

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
              A  +F  M  +DVV W ++I+ + QN    EA+  F  M+   V PD   +  ++SA
Sbjct: 393 SNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISA 452

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSW 379
           C  +  +DLG  +  +  + GL+ D+F  S            + A  +F DMP+ N V+W
Sbjct: 453 CTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAW 512

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           N++IS    N     ++ LF ++ +      P+ V+F  VL+A      + +G+ +   +
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRND--LYPDSVSFTSVLAAISSVAALLKGKSVHGYL 570

Query: 440 SSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              +  IP   +  + ++D+Y + G L  A    ER+ EK
Sbjct: 571 VRLW--IPFDLQVENTLIDMYIKCGLLKYAQHIFERISEK 608



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 201/416 (48%), Gaps = 45/416 (10%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157
           ++Y  +LKLY    +  +    FTYP +  +CA+L  L +G ++HSS+   GL  D +++
Sbjct: 35  RQYIEALKLY---TKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYIT 91

Query: 158 HSLITMYARCGKLDSARKVFDEIRER-----DLVSWNSMISGYSKMGYAKEAVELFGRMR 212
            SLI +Y +CG    A KVFD++ +      D+  WNS+I GY + G  +E +  FGRM+
Sbjct: 92  SSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQ 151

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
              +                      GK +  ++V+N ++ + ++ +ALID Y KCG   
Sbjct: 152 SSGYKE--------------------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPT 191

Query: 273 PARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
            AR +F  + ++ ++V WN MI  + +NGL   ++  +   K   V     +    LSAC
Sbjct: 192 EARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSAC 251

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
                +  GK V   A + G   D +           C  I+ A KVF ++P      WN
Sbjct: 252 GQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWN 311

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           A+ISA   NG A++AL ++++M  +      +  T + VL++   AGL D GR +   + 
Sbjct: 312 ALISAYVGNGYAYDALRIYKQM--KLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIV 369

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQK 495
               L       S ++ +Y++ G  + A      M E+ D +  G+++ G CQ +K
Sbjct: 370 KR-PLQSSITIQSALLTMYSKFGDSNYANSIFSTMKER-DVVAWGSVISGFCQNRK 423



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 190/360 (52%), Gaps = 18/360 (5%)

Query: 43  IHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
           IHT+++   +Q      + LL       D NYA+ +F  +   +  A+  +I G     +
Sbjct: 364 IHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQN-R 422

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           KY  +L  +  M+   +KPD+     +  +C  L  ++ G ++H  V K GL  D  V+ 
Sbjct: 423 KYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVAS 482

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           SL+ MY++ G  + A  +F ++  ++LV+WNS+IS Y +      ++ LF ++   +  P
Sbjct: 483 SLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYP 542

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           D ++  SVL +   +  L+ GK V G++V+  +  +  + + LIDMY KCG L  A+ +F
Sbjct: 543 DSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIF 602

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           + +  K++V WN+MI  Y  +G  ++AI LF+ M+ +G+ PD +T + +LS+C   G ++
Sbjct: 603 ERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIE 662

Query: 339 LGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISA 385
            G  +      K+  +  + H     D++   G + DA    ++MPV  + S W +++ +
Sbjct: 663 EGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCS 722


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/496 (33%), Positives = 281/496 (56%), Gaps = 14/496 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F +IS  +  ++  MI         +S +L+ + QM+  G KP+NFT+  V  +C 
Sbjct: 100 AREVFDEISSKDMVSWTGMIASYAEN-DCFSEALEFFSQMRVAGFKPNNFTFAGVLKACL 158

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L   + G +VH SV K   + D +V   L+ +Y RCG  D A + F ++ + D++ W+ 
Sbjct: 159 GLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSF 218

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MIS +++ G +++A+E+F +MR    +P++ T  SVL +  D+  L L K + G  +K  
Sbjct: 219 MISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAG 278

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + ++ +AL+  Y KCG +  +  +F+A+ +++ V+WN +I +Y Q G    A+ LF+
Sbjct: 279 LSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFS 338

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M    V   ++T   +L ACA++ AL+LG  V    ++     D+            CG
Sbjct: 339 NMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCG 398

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SI DA  +F+ + + ++VSWNA+I   + +G   EA+ +F  M +     +P+++TF+GV
Sbjct: 399 SIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKET--KCKPDELTFVGV 456

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC + G +DEG++ F  M   +G+ P  EHY+CMV L  R+G+L +A  F+E +P + 
Sbjct: 457 LSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP 516

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
             ++  ALLGAC    + ++ +   Q +LE+E  +  ++V+ S I+A  + W + A +R 
Sbjct: 517 SVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRK 576

Query: 540 LMREKGVSKTPGCSWI 555
            M+ KGV K PG SWI
Sbjct: 577 HMKRKGVKKEPGLSWI 592



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 212/412 (51%), Gaps = 25/412 (6%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
           ++F ++   N  +F  +I G   +  K+  + +L+ ++   G + +    PFVF +   L
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQS-NKFIEAFELFARLHGEGHELN----PFVFTTVLKL 55

Query: 133 LA----LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           L        G  VH  V K+G   +  +  +LI  Y+  G +  AR+VFDEI  +D+VSW
Sbjct: 56  LVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSW 115

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
             MI+ Y++     EA+E F +MR   F P+  T   VL +C  L +   GK V   V+K
Sbjct: 116 TGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLK 175

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              + + Y+G  L+++Y +CG    A R F  M   DV+ W+ MI+ +AQ+G S +A+ +
Sbjct: 176 TNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEI 235

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F +M+ A V P++ T   VL A A I +LDL K +  +A + GL  D+F           
Sbjct: 236 FCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAK 295

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I+ ++++FE +   N+VSWN +I +    G    AL LF  M +     +  +VT+ 
Sbjct: 296 CGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRY--QVQATEVTYS 353

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSS-FGLIPKSEHYSCMVDLYARAGHLSEA 468
            +L AC     ++ G ++  L + + +G        + ++D+YA+ G + +A
Sbjct: 354 SILRACATLAALELGLQVHCLTAKTIYG--QDVAVGNALIDMYAKCGSIKDA 403


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 276/497 (55%), Gaps = 16/497 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++   +  ++N MI G +     Y  S+KL+ +M     KPD  T   +  +C +L 
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQV-GLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 330

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  VH  +   G + D   S+ LI MYA+CG L ++++VF  ++ +D VSWNSMI+
Sbjct: 331 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 390

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y + G   EA++LF +M + +  PD +T V +L     LGDL LGK +   + K   + 
Sbjct: 391 VYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNS 449

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + + L+DMY KCG +  + +VF+ M  +D++TWN +I +   +   N  + + +RM+
Sbjct: 450 NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 509

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSID 362
             GV PD  T++ +L  C+ + A   GK +     + GL  D+            CGS+ 
Sbjct: 510 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 569

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           ++ +VF+ M   + V+W A+ISA    G   +A+  F  M  E     P+ V F+ ++ A
Sbjct: 570 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEM--EAAGIVPDHVAFVAIIFA 627

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H+GLV+EG   F  M   + + P+ EHY+C+VDL +R+  L +A DF+  MP K D  
Sbjct: 628 CSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSS 687

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALL AC+   +T++++RV + ++E+   ++G YV+ S I+A L  WD    +R  ++
Sbjct: 688 IWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIK 747

Query: 543 EKGVSKTPGCSWIGIDD 559
            +G+ K PGCSW+ I +
Sbjct: 748 ARGLKKDPGCSWMEIQN 764



 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 151/435 (34%), Positives = 234/435 (53%), Gaps = 20/435 (4%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N Y +N +IR LT     +S +L LY + +R+ L+PD +T+P V  +CA LL      S+
Sbjct: 79  NVYLWNSIIRALTHN-GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSI 137

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V  +G   D ++ ++LI MY R   LD ARKVF+E+  RD+VSWNS+ISGY+  GY 
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 197

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA+E++ R R    +PD  T+ SVL +CG LG +  G  + G + K  +  +  + + L
Sbjct: 198 NEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 257

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY K   L+  RR+FD MV +D V+WN MI  Y+Q GL  E+I LF  M      PD 
Sbjct: 258 LSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDL 316

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           +T+  +L AC  +G L+ GK+V  Y    G   D             CG++  + +VF  
Sbjct: 317 LTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSG 376

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSWN+MI+    NG   EA+ LF+ M  +    +P+ VT++ +LS     G + 
Sbjct: 377 MKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD---VKPDSVTYVMLLSMSTQLGDLH 433

Query: 431 EGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            G+ L  DL  +  G        + +VD+YA+ G + ++    E M  + D I    ++ 
Sbjct: 434 LGKELHCDL--AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIA 490

Query: 490 ACQKQKNTDVSQRVM 504
           +C   ++ ++  R++
Sbjct: 491 SCVHSEDCNLGLRMI 505



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 153/371 (41%), Gaps = 103/371 (27%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           +  ++KL+  MK   +KPD+ TY  +      L  L+ G  +H  + K+G + +  VS++
Sbjct: 398 FDEAMKLFKMMKT-DVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNT 456

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           L+ MYA+CG++  + KVF+ ++ RD+++WN++I+           + +  RMR E   PD
Sbjct: 457 LVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 516

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             T++S+L  C  L     GK + G + K  ++ +  +G+ LI+MY KCG+L  + +VF 
Sbjct: 517 MATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK 576

Query: 280 AMVNKDVVTWNAM-----------------------------------ITAYAQNGLSNE 304
            M  KDVVTW A+                                   I A + +GL  E
Sbjct: 577 LMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEE 636

Query: 305 AIMLFNRMK-----------YAGV----------------------NPDKITLIGVLSAC 331
            +  F+RMK           YA V                       PD      +LSAC
Sbjct: 637 GLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSAC 696

Query: 332 ASIGALD-----------------------------LGKW-----VDKYASQRGLRHDIF 357
              G  +                             LGKW     + K    RGL+ D  
Sbjct: 697 RMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPG 756

Query: 358 CGSIDDALKVF 368
           C  ++   KV+
Sbjct: 757 CSWMEIQNKVY 767



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 138/312 (44%), Gaps = 69/312 (22%)

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           + +V  WN++I A   NGL +EA+ L++  +   + PD  T   V++ACA +   ++ K 
Sbjct: 77  SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKS 136

Query: 343 VDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +       G   D++ G+           +D A KVFE+MP+ + VSWN++IS    NG 
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE-------------------- 431
            +EAL ++ R    G    P+  T   VL AC   G V+E                    
Sbjct: 197 WNEALEIYYRFRNLG--VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN 254

Query: 432 ---------------GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD-FVERM 475
                          GRR+FD M     ++  +  ++ M+  Y++ G   E+   F+E +
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKM-----VLRDAVSWNTMICGYSQVGLYEESIKLFMEMV 309

Query: 476 PE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLL----EIESSNS----------GNYVI 520
            + K D + + ++L AC    + +  + V   ++    E +++ S          GN + 
Sbjct: 310 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 369

Query: 521 SSKIFANLKMWD 532
           S ++F+ +K  D
Sbjct: 370 SQEVFSGMKCKD 381


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 257/440 (58%), Gaps = 17/440 (3%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +N  + +H+ + + G  +D  +   L+   ++C  +D A ++F      ++  + ++I G
Sbjct: 45  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 104

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +   G   +A++L+ RM  +  LPD   + S+L +CG    L  G+ V    +K  +  N
Sbjct: 105 FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSN 164

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAM----VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
             +   ++++YGKCG L  ARRVF+ M    V KD V W AMI  + +N   N A+  F 
Sbjct: 165 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFR 224

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+   V P++ T++ VLSAC+ +GAL++G+WV  Y  +  +  ++F           CG
Sbjct: 225 GMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCG 284

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SID+A  VF++M   + +++N MIS L+ NG++ +A+ LF  M   G   RP +VTF+GV
Sbjct: 285 SIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMI--GRRLRPTNVTFVGV 342

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC H GLVD G ++F  M+  +G+ P+ EHY CMVDL  R G L EA+D +  M    
Sbjct: 343 LNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTP 402

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+LG LL AC+  KN ++ ++V ++L +   ++SG YV+ S ++A+   W ++A++RA
Sbjct: 403 DHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 462

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            M+E G+ K PGCS I +++
Sbjct: 463 KMKEAGMQKEPGCSSIEVNN 482



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/470 (29%), Positives = 232/470 (49%), Gaps = 45/470 (9%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFH 76
           SL +++++SLL++      V  IH Q++ N   +  F++  ++         +YAS +F 
Sbjct: 29  SLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQ 88

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
               PN Y +  +I G  ++   Y  +++LY +M    + PDN+    +  +C + LAL 
Sbjct: 89  YTHNPNVYLYTALIDGFVSSGN-YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 147

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE----RDLVSWNSMI 192
            G  VHS   K+GL  +  V   ++ +Y +CG+L  AR+VF+E+ E    +D V W +MI
Sbjct: 148 EGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMI 207

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
            G+ +      A+E F  M+ E   P+E T+V VL +C  LG L +G+WV  ++ K +++
Sbjct: 208 DGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 267

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           LN ++G+ALI+MY +CG++  A+ VFD M ++DV+T+N MI+  + NG S +AI LF  M
Sbjct: 268 LNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVM 327

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372
               + P  +T +GVL+AC+  G +D G                         K+F  M 
Sbjct: 328 IGRRLRPTNVTFVGVLNACSHGGLVDFG------------------------FKIFHSMT 363

Query: 373 VTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
               V      +  M+  L   GR  EA  L   M        P+ +    +LSAC    
Sbjct: 364 RDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK-----MTPDHIMLGTLLSACKMHK 418

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            ++ G ++  ++         S  Y  +  +YA +G   EA     +M E
Sbjct: 419 NLELGEQVAKVLEDRGQ--ADSGTYVLLSHVYASSGKWKEAAQVRAKMKE 466



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 167/355 (47%), Gaps = 49/355 (13%)

Query: 8   YSRHLAFTELNDPSLLREKLLSLLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIID 64
           YSR L  + L D  L+     S+LK C S    +  +++H++ L   +     + +RI++
Sbjct: 118 YSRMLHDSILPDNYLM----ASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIME 173

Query: 65  L----KDFNYASLLFHQISR----PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           L     +   A  +F ++       +   +  MI G     ++ + +L+ +  M+   ++
Sbjct: 174 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRN-EEMNRALEAFRGMQGENVR 232

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P+ FT   V  +C+ L AL  G  VHS + K  ++ +  V ++LI MY+RCG +D A+ V
Sbjct: 233 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 292

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
           FDE+++RD++++N+MISG S  G +++A+ELF  M      P  +T V VL +C   G L
Sbjct: 293 FDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH-GGL 351

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
           V              D  F +  ++   YG               V   +  +  M+   
Sbjct: 352 V--------------DFGFKIFHSMTRDYG---------------VEPQIEHYGCMVDLL 382

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
            + G   EA  L   MK   + PD I L  +LSAC     L+LG+ V K    RG
Sbjct: 383 GRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG 434


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 306/604 (50%), Gaps = 75/604 (12%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLI-NFIQKPNFLLIRIIDLKD----FNYASLLFHQ 77
           +   +L ++  C + K+++ IH ++LI + +    F++ +++ L       +YA  +F +
Sbjct: 1   MNPPILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDE 60

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I++PN Y +  +I G     Q Y  +  L+ QM+R  +   NFT   V  + A L     
Sbjct: 61  ITQPNAYLWTSLIHGYVENRQ-YDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKG 119

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G +V+  V K G   D  V +S++ ++ RC K+D+AR+ FDE+ E+D+VSWN MISGY  
Sbjct: 120 GQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGN 179

Query: 198 MGYAKEAVELFGRMREE---------------------EFLPDEITL-------VSVLGS 229
                 A + F RM E                      + L D + +       V V G 
Sbjct: 180 NDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGY 239

Query: 230 CGDLGDLV-------------LGKW---VEGFVVKNKMD-----------LNFYMGSALI 262
             D+GD V              G W   + GF    +++            N      ++
Sbjct: 240 M-DIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIML 298

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y K G    AR +FD M  K++VTW+ MI  YA+NG   +A+ LF R K   + PD+ 
Sbjct: 299 DGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDET 358

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            ++G++SAC+ +G +D  + +        L  D+            CGSI+ AL++FE  
Sbjct: 359 FILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMA 418

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + + ++ MI+ALA +G   +A+ LF++M +     +P+ VTF+GVL+AC H GLVDE
Sbjct: 419 HPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRAN--IKPDSVTFLGVLTACNHGGLVDE 476

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           GR+ F  M+  FG+ P  +HY+C+VDL  R G L EA++ +  MP     +V GALL AC
Sbjct: 477 GRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAAC 536

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N  +++     L +IE  NSGNY++ S I+A    W   AK+RA +RE  V K  G
Sbjct: 537 RVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRG 596

Query: 552 CSWI 555
            SWI
Sbjct: 597 SSWI 600


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/531 (32%), Positives = 287/531 (54%), Gaps = 18/531 (3%)

Query: 43  IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
           +H   +++      F+   ++DL        YA  +F ++   +   +N MI GL     
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCC 184

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
            Y  S++++  M   G++ D+ T   V  + A +  +  G+ +     K+G   DD+V  
Sbjct: 185 -YDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLT 243

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            LI+++++C  +D+AR +F  IR+ DLVS+N++ISG+S  G  + AV+ F  +       
Sbjct: 244 GLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRV 303

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
              T+V ++      G L L   ++GF VK+   L   + +AL  +Y +   +  AR++F
Sbjct: 304 SSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLF 363

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D    K V  WNAMI+ YAQ+GL+  AI LF  M      P+ +T+  +LSACA +GAL 
Sbjct: 364 DESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALS 423

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            GK V +    + L  +I+           CG+I +A ++F+     N V+WN MI    
Sbjct: 424 FGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYG 483

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   EAL LF  M   G   +P+ VTF+ VL AC HAGLV EG  +F  M + + + P
Sbjct: 484 LHGYGDEALKLFNEMLHLG--FQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
            +EHY+CMVD+  RAG L +A +F+ +MP +    V G LLGAC   K+T++++   + L
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            E++  N G YV+ S I++  + +  +A +R  ++++ +SKTPGC+ I ++
Sbjct: 602 FELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVN 652



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 233/471 (49%), Gaps = 24/471 (5%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQIS 79
           R  LL+L+ K  +   + + H Q++ N  Q        L  ++ D+    +A  LF  + 
Sbjct: 8   RNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVP 67

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLY-YQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           +P+ + FNV+I+G +  +   + S+  Y + +K   L PDNFTY F   +  +    N G
Sbjct: 68  KPDIFLFNVLIKGFS--FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDD---NLG 122

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           + +H+     G D +  V+ +L+ +Y +  ++  ARKVFD++ +RD V WN+MI+G  + 
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               ++V++F  M  +    D  T+ +VL +  ++ ++ +G  ++   +K     + Y+ 
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           + LI ++ KC  +  AR +F  +   D+V++NA+I+ ++ NG +  A+  F  +  +G  
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQR 302

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRG--LRHDIFCG---------SIDDALKV 367
               T++G++   +  G L L   +  +  + G  L+  +             ID A ++
Sbjct: 303 VSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQL 362

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F++       +WNAMIS  A +G    A+ LF+ M        PN VT   +LSAC   G
Sbjct: 363 FDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTT--EFTPNPVTITSILSACAQLG 420

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +  G+ +  L+ S   L       + ++D+YA+ G++SEA    +   EK
Sbjct: 421 ALSFGKSVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK 470


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 260/453 (57%), Gaps = 14/453 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D   Y  +   C     L  G  VH  + +     D  ++++L+ MYA+CG L+ ARKVF
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D++ ERD V+W ++ISGYS+     +A+ LF +M    F P+E TL SV+ +        
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC 169

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            G  + GF VK   D N ++GSAL+D+Y + G +  A+ VFDA+ +++ V+WNA+I  +A
Sbjct: 170 CGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHA 229

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           +   + +A+ LF  M   G  P   +   +  AC+S G L+ GKWV  Y  + G +   F
Sbjct: 230 RRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 289

Query: 358 CG-----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
            G           SI DA K+F+ +   + VSWN++++A A +G  +EA+  FE M +  
Sbjct: 290 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRR-- 347

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
           G  RPN+++F+ VL+AC H+GL+DEG   ++LM    G++ ++ HY  +VDL  RAG L+
Sbjct: 348 GGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLN 406

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
            A  F+E MP +    +  ALL AC+  KNT++     + + E++  + G +VI   I+A
Sbjct: 407 RALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYA 466

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +   W+D+A++R  M+E GV K P CSW+ I++
Sbjct: 467 SGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 499



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 198/376 (52%), Gaps = 20/376 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
           +LLKKC   K + Q   +H  ++ +  +      N LL           A  +F ++   
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +  +I G +   + +  +L L+ QM R G  P+ FT   V  + A       G  +
Sbjct: 116 DFVTWTTLISGYSQHDRPFD-ALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQL 174

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G D + HV  +L+ +Y R G +D A+ VFD +  R+ VSWN++I+G+++    
Sbjct: 175 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGT 234

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++A+ELF  M  E F P   +  S+ G+C   G L  GKWV  +++K+   L  + G+ L
Sbjct: 235 EKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 294

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K G++  AR++FD +  +DVV+WN+++TAYAQ+G  NEA+  F  M+  G+ P++
Sbjct: 295 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNE 354

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           I+ + VL+AC+  G LD G    +   + G+  + +            G ++ AL+  E+
Sbjct: 355 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEE 414

Query: 371 MPVTNEVS-WNAMISA 385
           MP+    + W A+++A
Sbjct: 415 MPIEPTAAIWKALLNA 430


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/416 (39%), Positives = 243/416 (58%), Gaps = 18/416 (4%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP- 218
           LI   A    +  A  +F  +   ++ + N+ +   ++  +   A++ F         P 
Sbjct: 30  LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPN 89

Query: 219 -DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            DE T  SVL +C  L  +V G+ +   V K   + N ++ ++LIDMY K G L+ AR +
Sbjct: 90  PDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHL 149

Query: 278 FDAMVNKD--VVTWNAMITAYAQNGLSNEAIMLFNRMK-YAGVNPDKITLIGVLSACASI 334
           FD M  +D  VV WNAMI  YAQN   ++AI +F  M+ + GV P+ +TL+ VL ACA +
Sbjct: 150 FDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHL 209

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
           GALDLGKW+D + S+R +   +F           CG I +A +VF  M   + +SW+ +I
Sbjct: 210 GALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIII 269

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
             LA  G A EA   F  M   G   +PNDV F+G+L+AC HAGLV +G   F+ M   +
Sbjct: 270 CGLAMYGHADEAFGCFYEMLDCG--EKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEY 327

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           G+ PK EHY C+VDL +RAG L +A D +  MP K + I+ GALLG C+  +++   QRV
Sbjct: 328 GVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRV 387

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +Q +LE++S +SG+YV  + +++++   DD+AK R  MRE GV KTPGCSWI +D+
Sbjct: 388 VQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDN 443



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 206/372 (55%), Gaps = 27/372 (7%)

Query: 40  VQQIHTQMLINFIQK----PNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIR 91
           V QI  Q++ + I      PN + +++I    D  +   A+L+F  ++ PN +A N  ++
Sbjct: 4   VLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLK 63

Query: 92  GLTTAWQKYSHSLKLY-YQMKRLGL-KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
            L      + H+++ + +Q+       PD FT+  V  +CA L  + +G  +H+ V K G
Sbjct: 64  ALAQN-SHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQG 122

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDE--IRERDLVSWNSMISGYSKMGYAKEAVEL 207
            + +  V +SLI MY + G L  AR +FDE  +R+R++V WN+MI+GY++     +A+E+
Sbjct: 123 FESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEV 182

Query: 208 FGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           F  M++    +P+++TLVSVL +C  LG L LGKW++GF+ + +M L  ++G+AL DMY 
Sbjct: 183 FRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYA 242

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           KCG +  ARRVF+ M  +DV++W+ +I   A  G ++EA   F  M   G  P+ +  +G
Sbjct: 243 KCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMG 302

Query: 327 VLSACASIGALDLG----KWVDK-YASQRGLRH-----DIF--CGSIDDALKVFEDMPV- 373
           +L+AC   G +  G      +DK Y     + H     D+    G +D A  +   MP+ 
Sbjct: 303 LLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMK 362

Query: 374 TNEVSWNAMISA 385
            N + W A++  
Sbjct: 363 PNVIIWGALLGG 374


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 261/497 (52%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  +   N  ++N MI G     Q +  + KL+ Q+++     D  +      + A + 
Sbjct: 315 LFSLLPDHNLQSYNAMIIGYARNEQGF-QAFKLFLQLQKNSFSFDEVSLSGALSAAAVIK 373

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
             + G+ +H    K  L  +  V+++++ MY +CG L  A  +FDE+  RD VSWN++I+
Sbjct: 374 GHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIIT 433

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
              +     + +  FG M   +  PDE T  SVL +C        G  V G ++K+ M L
Sbjct: 434 ACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGL 493

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
             ++GSAL+DMY KCG +  A ++   +  + +V+WNA+I+ ++    S ++   F+ M 
Sbjct: 494 KMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHML 553

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             GV PD  T   VL  CA++  + LGK +     +  L  D++           CG++ 
Sbjct: 554 EMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMH 613

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           D+L +F   P  + V+WNAMI   A++G   EAL LFE M  E    +PN  TF+ VL A
Sbjct: 614 DSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHEN--IKPNHATFVSVLRA 671

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H G   +G   F  M+S + L P+ EHYSCMVD+  R+G + EA   ++ MP + D I
Sbjct: 672 CSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAI 731

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +   LL  C+ Q N +V+++    LL+++  +S  Y + S I+A+  MW   +K+R  MR
Sbjct: 732 IWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMR 791

Query: 543 EKGVSKTPGCSWIGIDD 559
              + K PGCSWI + D
Sbjct: 792 SHNLKKEPGCSWIEVKD 808



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 198/396 (50%), Gaps = 15/396 (3%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           LKL+ +M+R G+     TY  VF SCA L A   G  +H    K     D  V  + + M
Sbjct: 243 LKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDM 302

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           YA+C  +  A K+F  + + +L S+N+MI GY++     +A +LF ++++  F  DE++L
Sbjct: 303 YAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSL 362

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
              L +   +     G  + G  +K+ +  N  + +A++DMYGKCGALV A  +FD M  
Sbjct: 363 SGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEI 422

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +D V+WNA+ITA  QN    + +  F  M  + + PD+ T   VL ACA   A   G  V
Sbjct: 423 RDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEV 482

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
                + G+   +F           CG +++A K+   +     VSWNA+IS  +   ++
Sbjct: 483 HGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKS 542

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            ++   F  M + G    P++ T+  VL  C +   V  G+++   M     L+      
Sbjct: 543 EDSQRFFSHMLEMG--VEPDNFTYATVLDTCANLATVGLGKQIHAQM-IKLELLSDVYIT 599

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           S +VD+Y++ G++ ++     + P++ D +   A++
Sbjct: 600 STLVDMYSKCGNMHDSLLMFRKAPKR-DSVTWNAMI 634



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 18/340 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH--SLKLYYQMKRLGLKPDNFTYPFVFIS 128
           AS LF ++   +  ++N +I   T   Q  S   +L  +  M R  ++PD FTY  V  +
Sbjct: 413 ASGLFDEMEIRDPVSWNAII---TACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKA 469

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA   A ++G+ VH  + K G+     V  +L+ MY++CG ++ A K+   + E+ +VSW
Sbjct: 470 CAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSW 529

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++ISG+S    ++++   F  M E    PD  T  +VL +C +L  + LGK +   ++K
Sbjct: 530 NAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIK 589

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
            ++  + Y+ S L+DMY KCG +  +  +F     +D VTWNAMI  +A +GL  EA+ L
Sbjct: 590 LELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALEL 649

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF- 357
           F  M +  + P+  T + VL AC+ +G    G     K    YA +  L H     DI  
Sbjct: 650 FEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILG 709

Query: 358 -CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEA 395
             G +++AL++ +DMP   + + W  ++S     G    A
Sbjct: 710 RSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVA 749



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 193/419 (46%), Gaps = 47/419 (11%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  +F  C+N  AL  G   H+ +   G      V++ LI MY +C  L+ A KVF+E+
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 181 RERDLVSWNSM--------------------------------ISGYSKMGYAKEAVELF 208
            +RD+VSWN+M                                ISGY + G  ++++ +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            +MR+   + D  TL   L  C  L D VLG  + G  V+   D +   GSAL+DMY KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
            +L  +  VF  + +K+ ++W+A I    QN      + LF  M+  G+   + T   V 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
            +CA + A  LG  +  +A +     D+            C ++ DA K+F  +P  N  
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           S+NAMI   A N +  +A  LF ++ K   +   ++V+  G LSA        EG +L  
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSF--DEVSLSGALSAAAVIKGHSEGLQLHG 383

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
           L   S  L       + ++D+Y + G L EA    + M E  D +   A++ AC++ ++
Sbjct: 384 LAIKS-NLSSNICVANAILDMYGKCGALVEASGLFDEM-EIRDPVSWNAIITACEQNES 440



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/524 (24%), Positives = 235/524 (44%), Gaps = 29/524 (5%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
            K    H+  +       +   L+ +  KC + +   ++  +M    I   N ++     
Sbjct: 43  GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAG 102

Query: 65  LKDFNYASLLFHQISRPNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
                 A  +F+ +    +  ++N +I G          S+ ++ +M+ LG+  D+ T  
Sbjct: 103 AGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGD-IQKSIAVFLKMRDLGVMFDHTTLA 161

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
                C+ L     G+ +H    ++G D D     +L+ MYA+C  L+ +  VF E+ ++
Sbjct: 162 VSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDK 221

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           + +SW++ I+G  +       ++LF  M+ +     + T  SV  SC  L    LG  + 
Sbjct: 222 NWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLH 281

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +K     +  +G+A +DMY KC  +  A ++F  + + ++ ++NAMI  YA+N    
Sbjct: 282 CHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGF 341

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
           +A  LF +++    + D+++L G LSA A I     G  +   A +  L  +I       
Sbjct: 342 QAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAIL 401

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG++ +A  +F++M + + VSWNA+I+A   N    + L  F  M +      P+
Sbjct: 402 DMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLR--SKMEPD 459

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH------YSCMVDLYARAGHLS 466
           + T+  VL AC        G+R F       G I KS         S +VD+Y++ G + 
Sbjct: 460 EFTYGSVLKACA-------GQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMME 512

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           EA     R+ E+   +   A++     QK ++ SQR    +LE+
Sbjct: 513 EAEKIHYRLEEQT-MVSWNAIISGFSLQKKSEDSQRFFSHMLEM 555


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 281/497 (56%), Gaps = 18/497 (3%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLK-PDNFTYPFVFISCA 130
           +LF +I   +  ++  +I G   A Q +   +L+++ +M   G   P+ F +   F +C 
Sbjct: 208 MLFERIKDKDLISWGSIIAGF--AQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACG 265

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            + +  +G  +H    K  LD D +V  SL  MYAR   LDSAR  F  I   DLVSWNS
Sbjct: 266 AVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNS 325

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +++ YS  G   EA+ LF  MR+    PD IT+  +L +C     L  G+ +  ++VK  
Sbjct: 326 IVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLG 385

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D +  + ++L+ MY +C  L  A  VF  + ++DVVTWN+++TA AQ+    E + LF+
Sbjct: 386 LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFS 445

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            +  +  + D+I+L  VLSA A +G  ++ K V  YA + GL  D             CG
Sbjct: 446 LLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCG 505

Query: 360 SIDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           S+DDA+++FE M    +V SW+++I   A  G A EAL LF RM   G   RPN VTFIG
Sbjct: 506 SLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLG--IRPNHVTFIG 563

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL+AC   G V+EG   + +M   +G++P  EH SC+VDL ARAG L+EA +F+++MP +
Sbjct: 564 VLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFE 623

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            D I+   LL A +   + ++ +R  + +L I+ S+S  YV+   I+A    W++ A+++
Sbjct: 624 PDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLK 683

Query: 539 ALMREKGVSKTPGCSWI 555
             MR  GV K+PG SW+
Sbjct: 684 KAMRTSGVKKSPGKSWV 700



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 169/277 (61%), Gaps = 2/277 (0%)

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
            K+ + A + F++I  P+  ++N ++   +      S +L L+ +M+  GL+PD  T   
Sbjct: 302 FKNLDSARVAFYRIEAPDLVSWNSIVNAYSVE-GLLSEALVLFSEMRDSGLRPDGITVRG 360

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +  +C    AL HG  +HS + K+GLD D  V +SL++MYARC  L SA  VF EI+++D
Sbjct: 361 LLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD 420

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           +V+WNS+++  ++  + +E ++LF  + + E   D I+L +VL +  +LG   + K V  
Sbjct: 421 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHA 480

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV-NKDVVTWNAMITAYAQNGLSN 303
           +  K  +  +  + + LID Y KCG+L  A R+F+ M  N+DV +W+++I  YAQ G + 
Sbjct: 481 YAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAK 540

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           EA+ LF+RM+  G+ P+ +T IGVL+AC+ +G ++ G
Sbjct: 541 EALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG 577



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+  M R G   D F       +C  L  +  G  VH+   K     D  V ++L+T
Sbjct: 136 ALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVT 195

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEI 221
           MY++ G +D    +F+ I+++DL+SW S+I+G+++ G+  EA+++F +M  E    P+E 
Sbjct: 196 MYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEF 255

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
              S   +CG +G    G+ + G  +K ++D + Y+G +L DMY +   L  AR  F  +
Sbjct: 256 HFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRI 315

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
              D+V+WN+++ AY+  GL +EA++LF+ M+ +G+ PD IT+ G+L AC    AL  G+
Sbjct: 316 EAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGR 375

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  Y  + GL  D+            C  +  A+ VF ++   + V+WN++++A A + 
Sbjct: 376 LIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHN 435

Query: 391 RAHEALLLFERMSKEGGAARP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
              E L LF  ++K    + P  + ++   VLSA    G  +  +++      + GL+  
Sbjct: 436 HPEEVLKLFSLLNK----SEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKA-GLVDD 490

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
               + ++D YA+ G L +A    E M    D
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRD 522



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 205/411 (49%), Gaps = 23/411 (5%)

Query: 122 YPFVFISCANLLALNHGVSVH-------SSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           Y  +  +C+ L +L  G  VH       SS     L  +  + + LITMY RC   DSAR
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           +VFDE+  R+ VSW S+I+ + + G A +A+ LF  M       D+  L S + +C +LG
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D+  G+ V    +K++   +  + +AL+ MY K G +     +F+ + +KD+++W ++I 
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 295 AYAQNGLSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            +AQ G   EA+ +F +M   G  +P++        AC ++G+ + G+ +   + +  L 
Sbjct: 227 GFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD 286

Query: 354 HDIFCG-----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            D++ G           ++D A   F  +   + VSWN++++A +  G   EAL+LF  M
Sbjct: 287 RDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEM 346

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G   RP+ +T  G+L ACV    +  GR +   +    GL       + ++ +YAR 
Sbjct: 347 RDSG--LRPDGITVRGLLCACVGRDALYHGRLIHSYL-VKLGLDGDVSVCNSLLSMYARC 403

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
             LS A D    + ++ D +   ++L AC +  + +   ++  LL + E S
Sbjct: 404 SDLSSAMDVFHEIKDQ-DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPS 453


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 269/514 (52%), Gaps = 47/514 (9%)

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N++IR L      ++  + +YY ++  GL  D+FTYPFV  +   L     G   H++  
Sbjct: 15  NLLIRTLARR-GSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAM 73

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           K G   D + + SL+ MY   G+ D ARK+FDE+  R LV WN MI  Y + G    A+ 
Sbjct: 74  KTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIA 133

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           L   M      PD++TLV+ +  C   GDL LG+ +  ++       +  + +AL+DMY 
Sbjct: 134 LAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYM-DGVFGFSLPVANALLDMYM 192

Query: 267 KCGALVPARRVFDAMVN-------------------------------KDVVTWNAMITA 295
           K G L  A ++F+ M +                               KD++ W AMI A
Sbjct: 193 KNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINA 252

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
             Q+G   EA+ LF  M+   V PD+ T++ +L+ CA++GALD G+W+ ++A  R ++ D
Sbjct: 253 CVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVD 312

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                        CG +  +++VFE M   +  +W ++I  LA NG+A  AL LFE M  
Sbjct: 313 AVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDM-- 370

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           E    +P+ +TFIGVLSAC H GLVDEGR+ F  M   + + P+ EHYSC+V+L  RAG 
Sbjct: 371 ERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGL 430

Query: 465 LSEAWDFVERMPEKVDEIVL-GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
           L EA   +  +    D + L GALL AC+ Q N ++S+R+ + + E         ++ S 
Sbjct: 431 LDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVNLLMSN 490

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++A    W+D+ ++R+ M    + KT GCS I +
Sbjct: 491 VYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEV 524



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
            + A +LF+Q S  +   +  MI         +  +L L+ +M+   ++PD FT   +  
Sbjct: 228 LDKARVLFYQCSEKDLIMWTAMINACVQH-GCFEEALSLFREMQMQRVEPDRFTIVTLLT 286

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
            CANL AL+ G  +H       +  D  +  +LI MYA+CG +  + +VF++++ RD  +
Sbjct: 287 CCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTA 346

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W S+I G +  G A  A+ELF  M   +  PD IT + VL +C   G LV     +   +
Sbjct: 347 WTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVLSACCH-GGLVDEGRKQFHAM 405

Query: 248 KN--KMDLNFYMGSALIDMYGKCGALVPARRVF-DAMVNKDVVT-WNAMITAYAQNGLSN 303
           K+  ++       S L+++ G+ G L  A ++  D  +NKD +  + A++TA    G   
Sbjct: 406 KDVYRIPPRIEHYSCLVNLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVE 465

Query: 304 EAIMLFNRMKYAGVN-PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +  L  R+   G   PD   L+  + A AS       +W D    +  + H
Sbjct: 466 MSERLTKRIGEQGYQIPDVNLLMSNVYATAS-------RWEDAIRVRSKMAH 510


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 261/467 (55%), Gaps = 13/467 (2%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y  SL+L+ QM+ +G KP+NFT      SC  L A N G SVH    K   D D  V  +
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           L+ +YA+ G++  A+++F+E+ + DL+ W+ MI+ Y++   +KEA++LF RMR+   +P+
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             T  SVL +C     L LGK +   V+K  ++ N ++ +A++D+Y KCG +  + ++F+
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFE 397

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            + +++ VTWN +I  Y Q G    A+ LF  M    + P ++T   VL A AS+ AL+ 
Sbjct: 398 ELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEP 457

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G  +     +     D             CG I+DA   F+ M   +EVSWNAMI   + 
Sbjct: 458 GLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSM 517

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           +G + EAL LF+ M       +PN +TF+GVLSAC +AGL+ +G+  F+ MS  + + P 
Sbjct: 518 HGMSMEALNLFDMMQHTD--CKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPC 575

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            EHY+CMV L  R G   EA   +  +  +   +V  ALLGAC   K  D+ +   Q +L
Sbjct: 576 IEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVL 635

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           E+E  +   +V+ S ++A    WD+ A +R  M++K V K PG SW+
Sbjct: 636 EMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWV 682



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 148/489 (30%), Positives = 253/489 (51%), Gaps = 45/489 (9%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           DP   +     +LK+  S     Q    +L+NF  + N        L+D   AS LF ++
Sbjct: 50  DPIAGKHLHCHILKRGTSLDLFAQ---NILLNFYVQSN-------SLQD---ASKLFDEM 96

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA---L 135
            + N  +F  + +G +   Q +  +L    ++ + G + +    PFVF +   LL    L
Sbjct: 97  PQTNTISFVTLAQGYSRDHQ-FHQALHFILRIFKEGHEVN----PFVFTTLLKLLVSMDL 151

Query: 136 NHGV-SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
            H   ++H+ V+K+G   D  V  +LI  Y+  G +D AR VFD+I  +D+VSW  M++ 
Sbjct: 152 AHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVAC 211

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y++  + +E+++LF +MR   + P+  T+   L SC  L    +GK V G  +K   D +
Sbjct: 212 YAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHD 271

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++G AL+++Y K G ++ A+R+F+ M   D++ W+ MI  YAQ+  S EA+ LF RM+ 
Sbjct: 272 LFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQ 331

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
             V P+  T   VL ACAS  +LDLGK +     + GL  ++F           CG I++
Sbjct: 332 TSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIEN 391

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           ++K+FE++P  N+V+WN +I      G    A+ LF  M +     +P +VT+  VL A 
Sbjct: 392 SMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHD--MQPTEVTYSSVLRAS 449

Query: 424 VHAGLVDEGRRLFDL----MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
                ++ G ++  L    M +   ++  S     ++D+YA+ G +++A    ++M  K 
Sbjct: 450 ASLAALEPGLQIHSLTIKTMYNKDTVVANS-----LIDMYAKCGRINDARLTFDKM-NKR 503

Query: 480 DEIVLGALL 488
           DE+   A++
Sbjct: 504 DEVSWNAMI 512



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 200/363 (55%), Gaps = 25/363 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++ + +   +++MI     +  +   +L L+ +M++  + P+NFT+  V  +CA
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQS-DRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           + ++L+ G  +HS V K GL+ +  VS++++ +YA+CG+++++ K+F+E+ +R+ V+WN+
Sbjct: 350 SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNT 409

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I GY ++G  + A+ LF  M E +  P E+T  SVL +   L  L  G  +    +K  
Sbjct: 410 IIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTM 469

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            + +  + ++LIDMY KCG +  AR  FD M  +D V+WNAMI  Y+ +G+S EA+ LF+
Sbjct: 470 YNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFD 529

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370
            M++    P+K+T +GVLSAC++ G L  G+                    +   K ++ 
Sbjct: 530 MMQHTDCKPNKLTFVGVLSACSNAGLLYKGQ-----------------AHFESMSKDYDI 572

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
            P      +  M+  L   GR  EA+ L   +     A +P+ + +  +L ACV    VD
Sbjct: 573 KPCIEH--YTCMVWLLGRLGRFDEAMKLIGEI-----AYQPSVMVWRALLGACVIHKKVD 625

Query: 431 EGR 433
            GR
Sbjct: 626 LGR 628


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 25/453 (5%)

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG------------KLDSARKVF 177
           +++ A N+ VS  S  F+  + E D+   S       C              +DS RK+F
Sbjct: 198 SDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIF 257

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           + + E+DLVSWN++I+G ++ G   E + +   M      PD  TL SVL    +  D+ 
Sbjct: 258 EMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDIS 317

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            GK + G  ++  +D   Y+ S+LIDMY KC  +V + RVF  +  +D ++WN++I    
Sbjct: 318 KGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCV 377

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           QNGL +E +  F +M  A + P   +   ++ ACA +  L LGK +  Y ++ G   +IF
Sbjct: 378 QNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 437

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CG+I  A ++F+ M + + VSW AMI   A +G A +A+ LFE+M  EG
Sbjct: 438 IASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEG 497

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
               PN V F+ VL+AC HAGLVDE  + F+ M+  FG+ P  EHY+ + DL  RAG L 
Sbjct: 498 --IEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLE 555

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           EA+DF+  MP      V   LL AC+  KN D++++V   +LE++  N+G Y++ + I++
Sbjct: 556 EAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYS 615

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             + W ++AK RA +R  G+ KTP CSWI + +
Sbjct: 616 AARRWKEAAKWRASLRRTGIRKTPACSWIEVRN 648



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 21/319 (6%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y  +L +  +M    LKPD+FT   V    A  + ++ G  +H    + GLD + +V+ S
Sbjct: 281 YGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASS 340

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI MYA+C ++  + +VF  + ERD +SWNS+I+G  + G   E ++ F +M   +  P 
Sbjct: 341 LIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPK 400

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             +  S++ +C  L  L LGK + G++ +N  D N ++ S+L+DMY KCG +  AR++FD
Sbjct: 401 SYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFD 460

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD- 338
            M  +D+V+W AMI   A +G + +AI LF +MK  G+ P+ +  + VL+AC+  G +D 
Sbjct: 461 RMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDE 520

Query: 339 -------------LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-WNAMIS 384
                        +   V+ YA+   L      G +++A      MP+    S W  ++S
Sbjct: 521 AWKYFNSMTLDFGIAPGVEHYAAVSDLLGR--AGRLEEAYDFICGMPIGPTGSVWATLLS 578

Query: 385 ALAFNGRAHEALLLFERMS 403
           A     R H+ + + E+++
Sbjct: 579 AC----RVHKNVDMAEKVA 593



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 198/442 (44%), Gaps = 52/442 (11%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF+ +  P   A+  +IR  T+    +  SL  +  M   GL PD+  +P V  +CA L+
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHK-SLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD-------SARKVFDEIRERDL- 185
            LN G S+H  + ++GLD D +  ++L+ MY++   L         A +V DE+ ER   
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 186 VSWNSMISGYSKMGYAKEAVELFG-----RMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           V   S++ G    G     +E F      R RE E    EI          ++    LG+
Sbjct: 183 VRTASVLVG--NQGRKVSDIEAFNYDVSCRSREFEAQVLEIDY-KPRSEYREMEACNLGQ 239

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            ++        D++  M            ++   R++F+ M  KD+V+WN +I   A+NG
Sbjct: 240 QIK--------DISHSM------------SVDSVRKIFEMMPEKDLVSWNTIIAGNARNG 279

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
           L  E + +   M  A + PD  TL  VL   A    +  GK +   + ++GL  +++   
Sbjct: 280 LYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVAS 339

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   C  + D+ +VF  +   + +SWN++I+    NG   E L  F +M       
Sbjct: 340 SLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLM--AKI 397

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           +P   +F  ++ AC H   +  G++L   ++ + G        S +VD+YA+ G++  A 
Sbjct: 398 KPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAR 456

Query: 470 DFVERMPEKVDEIVLGALLGAC 491
              +RM  + D +   A++  C
Sbjct: 457 QIFDRMRLR-DMVSWTAMIMGC 477



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 148/340 (43%), Gaps = 25/340 (7%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           +Y+    L  + ++F+ +     ++W S+I  Y+  G   +++  F  M      PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL-------VPAR 275
             SVL +C  L DL LG+ + G++++  +D + Y G+AL++MY K   L       + A 
Sbjct: 111 FPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV----LSAC 331
           +V D M  +      A +    Q G     I  FN          +  ++ +     S  
Sbjct: 171 QVLDEMTERTRSVRTASVLVGNQ-GRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEY 229

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
             + A +LG+ +      + + H +   S+D   K+FE MP  + VSWN +I+  A NG 
Sbjct: 230 REMEACNLGQQI------KDISHSM---SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGL 280

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             E L +   M   G   +P+  T   VL        + +G+ +    S   GL  +   
Sbjct: 281 YGETLTMVREMG--GANLKPDSFTLSSVLPLIAENVDISKGKEIHGC-SIRQGLDAEVYV 337

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            S ++D+YA+   + +++     + E+ D I   +++  C
Sbjct: 338 ASSLIDMYAKCTRVVDSYRVFTLLTER-DGISWNSIIAGC 376


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/448 (37%), Positives = 262/448 (58%), Gaps = 23/448 (5%)

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
            TYPFV  +C        G+ VH+ V K G + D ++ +SLI +YA    L +A+++F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
             +RD+VSWN+MI GY K G       +F RM       D I+  +++      G  ++G
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIIN-----GYAIVG 111

Query: 240 KWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           K  E   + ++M + N    ++++  + KCG +  A  +F  M  +DVV+WN+M+  YAQ
Sbjct: 112 KIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQ 171

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---- 354
            G  NEA+ LF++M+  GV P + T++ +LSACA +GALD G  +  Y +   +      
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 231

Query: 355 -----DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                D++  CG I  A +VF  M   + ++WN +I+ +A +G   EA  LF+ M +   
Sbjct: 232 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE--A 289

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           +  PND+TF+ +LSAC HAG+VDEG++L D MSSS+G+ PK EHY C++DL ARAG L E
Sbjct: 290 SVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEE 349

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A + +  MP + +   LGALLG C+   N ++ + V + L+ ++  +SG Y++ S I+A 
Sbjct: 350 AMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAA 409

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWI 555
            K WDD+ K+R LM+  G+SK PG S I
Sbjct: 410 AKKWDDARKVRNLMKVNGISKVPGVSVI 437



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 163/348 (46%), Gaps = 45/348 (12%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N +L   +   +   A  LF ++   +  ++N M+        K + +L L+ QM+ +G+
Sbjct: 132 NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSML-ACYAQCGKPNEALALFDQMRAVGV 190

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           KP   T   +  +CA+L AL+ G+ +H+ +    ++ +  V  +L+ MYA+CGK+  A +
Sbjct: 191 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 250

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF+ +  +D+++WN++I+G +  G+ KEA +LF  M+E    P++IT V++L +C   G 
Sbjct: 251 VFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAG- 309

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
                     +V     L   M S+    YG               +   V  ++ +I  
Sbjct: 310 ----------MVDEGQKLLDCMSSS----YG---------------IEPKVEHYDCVIDL 340

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK--------YA 347
            A+ GL  EA+ L   M    + P+   L  +L  C   G  +LG+ V K        ++
Sbjct: 341 LARAGLLEEAMELIGTMP---MEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHS 397

Query: 348 SQRGLRHDIFCGSI--DDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            +  L  +I+  +   DDA KV   M V N +S    +S +   G  H
Sbjct: 398 GRYILLSNIYAAAKKWDDARKVRNLMKV-NGISKVPGVSVIELKGMVH 444


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 185/551 (33%), Positives = 297/551 (53%), Gaps = 23/551 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           S++K C S+  V   +Q+H Q++     + +   N L+   +     + AS +F+ I   
Sbjct: 173 SIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK 232

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVS 140
           +  +++ +I G +    ++  +L    +M   G+  P+ + +     +C++LL  ++G  
Sbjct: 233 DLISWSSIIAGFSQLGFEF-EALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 291

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K  L  +     SL  MYARCG L+SAR+VFD+I   D  SWN +I+G +  GY
Sbjct: 292 IHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGY 351

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A EAV +F +MR   F+PD I+L S+L +      L  G  +  +++K     +  + ++
Sbjct: 352 ADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNS 411

Query: 261 LIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           L+ MY  C  L     +F D   N D V+WN ++TA  Q+    E + LF  M  +   P
Sbjct: 412 LLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEP 471

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D IT+  +L  C  I +L LG  V  Y+ + GL  + F           CGS+  A ++F
Sbjct: 472 DHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIF 531

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   + VSW+ +I   A +G   EAL+LF+ M   G    PN VTF+GVL+AC H GL
Sbjct: 532 DSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAG--IEPNHVTFVGVLTACSHVGL 589

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+EG +L+  M +  G+ P  EH SC+VDL ARAG L+EA  F++ M  + D +V   LL
Sbjct: 590 VEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLL 649

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+ Q N  ++Q+  + +L+I+  NS  +V+   + A+   W+++A +R+ M++  V K
Sbjct: 650 SACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKK 709

Query: 549 TPGCSWIGIDD 559
            PG SWI I+D
Sbjct: 710 IPGQSWIEIED 720



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 198/403 (49%), Gaps = 15/403 (3%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  +  +C++  +L  G  +H  +       D  +++ +++MY +CG L  AR+VFD +
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            ER+LVS+ S+I+GYS+ G   EA+ L+ +M +E+ +PD+    S++ +C    D+ LGK
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +   V+K +   +    +ALI MY +   +  A RVF  +  KD+++W+++I  ++Q G
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248

Query: 301 LSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
              EA+     M   GV +P++      L AC+S+   D G  +     +  L  +    
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG ++ A +VF+ +   +  SWN +I+ LA NG A EA+ +F +M   G  
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             P+ ++   +L A      + +G ++   +   +G +      + ++ +Y     L   
Sbjct: 369 --PDAISLRSLLCAQTKPMALSQGMQIHSYI-IKWGFLADLTVCNSLLTMYTFCSDLYCC 425

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           ++  E      D +    +L AC + +      R+ +L+L  E
Sbjct: 426 FNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSE 468


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 194/592 (32%), Positives = 300/592 (50%), Gaps = 71/592 (11%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL---- 74
           +P  L  KL ++     S K  +Q+H  +LI+ +     +L R I +   NY++ +    
Sbjct: 2   EPRCLFSKLSTI---SLSVKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYV 58

Query: 75  ---FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
               H    P+ +++   IR  +T   ++  +  LY QM+R GL P  F       +CA 
Sbjct: 59  HSVLHHSKSPDSFSWACAIR-FSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACAR 117

Query: 132 LLALNHGVSVHSSVFKIGLD---EDDHVSHSLITMYARCGKLDSARKVFDEIRER----- 183
           +     G+S+H  V K G     +  +V  +L+  Y + G ++ ARK+FDE+ ER     
Sbjct: 118 IAYRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSW 177

Query: 184 --------------------------DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
                                     D++SWNSMISGY++ G  ++A  LF +M E  F 
Sbjct: 178 NSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNF- 236

Query: 218 PDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
               +  +++    + GD+   + + +    KN +    +M   +I  Y KCG +  A  
Sbjct: 237 ---ASWNAMISGHVEFGDIDSARSFFDAMPQKNNVS---WM--TMISGYSKCGDVDSACE 288

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASI 334
           +FD +  KD++ +NAMI  YAQN   NEA+ LFN M   Y  V PD++TL  V+SAC+ +
Sbjct: 289 LFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQL 348

Query: 335 GALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMI 383
           G L  G W++ Y  + G+  D             CGSID A ++F  +   + V++ AMI
Sbjct: 349 GDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMI 408

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
                NG+A +A+ LF+ M        PN +TFIG+L+A  HAGLV+EG R F  M   +
Sbjct: 409 LGCGINGKAIDAIKLFDEMVD--AQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKK-Y 465

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
            L+P  +HY  MVDL+ RAG L EA + ++ MP +    V GALL AC+   N +  +  
Sbjct: 466 NLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIA 525

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            Q   E+E   +G   + S I+A+ + WDD  ++R + +EKG SK PGCSW+
Sbjct: 526 AQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWM 577


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 174/549 (31%), Positives = 298/549 (54%), Gaps = 19/549 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFI---QKPNFLLIR-IIDLKDFNYASLLFHQISR 80
           + L +LL       T+ +IH  M++  I      N  LI+    L     A  +F +  +
Sbjct: 8   KSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQ 67

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
               A+N MI   +     +  +L LY++M   G++PD+ TY  V  +C   L L  G  
Sbjct: 68  CGVDAWNAMIIAYSRRGAMFE-ALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEE 126

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
                   G  +D  V  +++ +YA+CGK+D A +VFD++  RDLV W +MI+G ++ G 
Sbjct: 127 TWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQ 186

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A+EAV+++ +M ++    D + ++ ++ +C  LG   +G  + G++++  + ++  + ++
Sbjct: 187 AREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTS 246

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+DMY K G L  A  VF  M+ K+V++W+A+I+ +AQNG +  A+ L   M+  G  PD
Sbjct: 247 LVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPD 306

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
            ++L+ VL AC+ +G L LGK V  Y  +R L  D             CGS+  A  VF+
Sbjct: 307 SVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFD 365

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +   + +SWNA+I++   +G   EAL LF +M +     +P+  TF  +LSA  H+GLV
Sbjct: 366 QISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETN--VKPDHATFASLLSAFSHSGLV 423

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           ++GR  F +M + + + P  +HY+CMVDL +RAG + EA + +E M  +    +  ALL 
Sbjct: 424 EKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLS 483

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C       + +   + +LE+   + G Y + S  FA  + WD+ A++R +M++ G+ K 
Sbjct: 484 GCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKV 543

Query: 550 PGCSWIGID 558
           PG S + ++
Sbjct: 544 PGYSVMEVN 552


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 256/462 (55%), Gaps = 15/462 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCG 168
           ++R  L PD   Y  +   C  L  +  G  VH+ +     LD    + + ++ MYA+CG
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            LD AR++FDE+  +D+V+W ++I+G+S+    ++A+ LF +M      P+  TL S+L 
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLK 197

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           + G    L  G  +  F +K     + Y+GSAL+DMY +CG +  A+  FD M  K  V+
Sbjct: 198 ASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS 257

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA+I+ +A+ G    A+ L  +M+     P   T   V SACASIGAL+ GKWV  +  
Sbjct: 258 WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMI 317

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + GL+   F            GSIDDA +VF+ +   + VSWN M++  A +G   E L 
Sbjct: 318 KSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLD 377

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            FE+M + G    PN+++F+ VL+AC H+GL+DEG   F+LM   + + P   HY   VD
Sbjct: 378 RFEQMLRIG--IEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVD 434

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  R G L  A  F+  MP +    V GALLGAC+  KN ++     +   E++  +SG 
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGP 494

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++ S I+A+   W D AK+R +M+E GV K P CSW+ I++
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 200/376 (53%), Gaps = 21/376 (5%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISRP 81
           LLK+C     V+Q   +H  ++ +     + +L  II          + A  +F ++   
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +  +I G +    +   +L L+ QM RLGL+P++FT   +  +  +   L+ G  +
Sbjct: 153 DMVTWTALIAGFSQN-NRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQL 211

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K G     +V  +L+ MYARCG +D+A+  FD +  +  VSWN++ISG+++ G  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEG 271

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           + A+ L  +M+ + F P   T  SV  +C  +G L  GKWV   ++K+ + L  ++G+ L
Sbjct: 272 EHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTL 331

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K G++  A+RVFD +V  DVV+WN M+T  AQ+GL  E +  F +M   G+ P++
Sbjct: 332 LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNE 391

Query: 322 ITLIGVLSACASIGALDLGKW----VDKYASQRGLRHDIF-------CGSIDDALKVFED 370
           I+ + VL+AC+  G LD G +    + KY  +  + H +         G +D A +   +
Sbjct: 392 ISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 371 MPVTNEVS-WNAMISA 385
           MP+    + W A++ A
Sbjct: 452 MPIEPTAAVWGALLGA 467


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 178/543 (32%), Positives = 294/543 (54%), Gaps = 31/543 (5%)

Query: 31  LKKCPSTKTVQQIHTQML----INFIQKPNFLLIRIID--LKDFNYASLLFHQISRPNEY 84
           L+ C + +   Q+H   +    +N     + LL    D  + +  YA  LF  I  P   
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N++I+      Q+ + ++ L+ ++      PD+FT P V   CA L AL  G  +H  
Sbjct: 82  SWNLLIKCYIEN-QRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGL 139

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V KIG   D  V  SL++MY++CG+++  RKVFD + ++D+VSWNS+I GY++ G  + A
Sbjct: 140 VLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELA 199

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-EGFVVKNKMDLNFYMGSALID 263
           +E+F  M E+    D  +   ++      G L   + V +   ++N +  N     A+I+
Sbjct: 200 LEMFEEMPEK----DSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWN-----AMIN 250

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
            Y K G    A+ +FD M  + +VTWN+MIT Y +N    +A+ LF  M    ++P+  T
Sbjct: 251 GYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTT 310

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
           ++G +SA + + +L  G+WV  Y  + G + D             CGS+  AL+VF  +P
Sbjct: 311 ILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIP 370

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
                 W ++I  L  +G   + L LF+ M + G   +P+ +TFIGVL+AC HAG  ++ 
Sbjct: 371 KKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTG--LKPHAITFIGVLNACSHAGFAEDA 428

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
            R F +M+  +G+ P  EHY C++D+  RAGHL EA D +ERMP K ++++  +LL   +
Sbjct: 429 HRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSR 488

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
           K  N  + +   Q L+++    +G YVI S ++A   +W+   ++R +M++KG+ K PGC
Sbjct: 489 KHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGC 548

Query: 553 SWI 555
           S I
Sbjct: 549 SSI 551


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 280/555 (50%), Gaps = 21/555 (3%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQML-INFIQKPNF---LLIRIIDLKDFNYASLLFHQIS 79
           L SL+  C S  T+   QQ+H     + F         LL       D   A   F +  
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETE 434

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             N   +NVM+           +S +++ QM+   + P+ +TYP +  +C  L  L  G 
Sbjct: 435 VENVVLWNVMLVAYGL-LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 493

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +HS + K     + +V   LI MYA+ GKLD+A  +      +D+VSW +MI+GY++  
Sbjct: 494 QIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 553

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           +  +A+  F +M +     DE+ L + + +C  L  L  G+ +      +    +    +
Sbjct: 554 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN 613

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+ +Y KCG +  A   F+     D + WNA+++ + Q+G + EA+ +F RM   G++ 
Sbjct: 614 ALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDS 673

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +  T    + A +    +  GK V    ++ G   +             CGSI DA K F
Sbjct: 674 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF 733

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            ++ + NEVSWNAMI+A + +G   EAL  F++M       RPN VT +GVLSAC H GL
Sbjct: 734 LELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSN--VRPNHVTLVGVLSACSHIGL 791

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VD+G   F+ M++ +GL PK EHY C+VD+  RAG LS A DF+  MP + D +V   LL
Sbjct: 792 VDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLL 851

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC   KN ++ +     LLE+E  +S  YV+ S ++A  + WD     R  M+EKGV K
Sbjct: 852 SACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKK 911

Query: 549 TPGCSWIGIDDPKQS 563
            PG SWI + +   S
Sbjct: 912 EPGQSWIEVKNSIHS 926



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 236/458 (51%), Gaps = 21/458 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL-----FHQISRP 81
           +LS  KK  S +  +Q+H  +L        ++   ++ L  F+  SL+     F  +S+ 
Sbjct: 277 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLY-FHLGSLISAEHIFSNMSQR 335

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +N +I GL+        +++L+ +M+  GL+PD+ T   + ++C++   L  G  +
Sbjct: 336 DAVTYNTLINGLSQCGYG-EKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQL 394

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K+G   +D +  +L+ +YA+C  +++A   F E    ++V WN M+  Y  +   
Sbjct: 395 HAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDL 454

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           + +  +F +M+ EE +P++ T  S+L +C  LGDL LG+ +   ++K    LN Y+ S L
Sbjct: 455 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVL 514

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMY K G L  A  +      KDVV+W  MI  Y Q    ++A+  F +M   G+  D+
Sbjct: 515 IDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDE 574

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFED 370
           + L   +SACA + AL  G+ +   A   G   D+            CG+I++A   FE 
Sbjct: 575 VGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQ 634

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + ++WNA++S    +G   EAL +F RM++EG     N+ TF   + A      + 
Sbjct: 635 TEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREG--IDSNNFTFGSAVKAASETANMK 692

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           +G+++  +++ + G   ++E  + ++ +YA+ G +S+A
Sbjct: 693 QGKQVHAVITKT-GYDSETEVCNAIISMYAKCGSISDA 729



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 251/537 (46%), Gaps = 30/537 (5%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
           V+QIH +++   + K   +   +IDL   N     A  +F  +   +  ++  MI GL+ 
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSK 248

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
             +    +++L+  M  LG+ P  + +  V  +C  + +L  G  +H  V K+G   D +
Sbjct: 249 N-ECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++L+++Y   G L SA  +F  + +RD V++N++I+G S+ GY ++A+ELF RM+ + 
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG 367

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  TL S++ +C   G L  G+ +  +  K     N  +  AL+++Y KC  +  A 
Sbjct: 368 LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETAL 427

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
             F     ++VV WN M+ AY        +  +F +M+   + P++ T   +L  C  +G
Sbjct: 428 NYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
            L+LG+ +     +   + + +            G +D A  +       + VSW  MI+
Sbjct: 488 DLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 547

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
                    +AL  F +M   G   R ++V     +SAC     + EG+++      S G
Sbjct: 548 GYTQYNFDDKALTTFRQMLDRG--IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-G 604

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
                   + +V LY++ G++ EA+   E+  E  D I   AL+   Q+  N + + RV 
Sbjct: 605 FSSDLPFQNALVTLYSKCGNIEEAYLAFEQ-TEAGDNIAWNALVSGFQQSGNNEEALRVF 663

Query: 505 QLLLEIESSNSGNYVISSKI-----FANLKMWDDSAKMRALMREKGV-SKTPGCSWI 555
              +  E  +S N+   S +      AN+K      ++ A++ + G  S+T  C+ I
Sbjct: 664 A-RMNREGIDSNNFTFGSAVKAASETANMK---QGKQVHAVITKTGYDSETEVCNAI 716



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           ++  G++P++ T  ++   C     +L+ G  +HS + K+G D +  +S  L+  Y   G
Sbjct: 58  VENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKG 117

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            LD A KVFDE+ ER + +WN MI   +    + +   LFGRM  E   P+E T   VL 
Sbjct: 118 DLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE 177

Query: 229 SC--GDLG-DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +C  G +  D+V  + +   ++   +  +  + + LID+Y + G +  ARRVFD +  KD
Sbjct: 178 ACRGGSVAFDVV--EQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKD 235

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
             +W AMI+  ++N    EAI LF  M   G+ P       VLSAC  I +L++G+ +  
Sbjct: 236 HSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHG 295

Query: 346 YASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
              + G   D +            GS+  A  +F +M   + V++N +I+ L+  G   +
Sbjct: 296 LVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEK 355

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A+ LF+RM  +G    P+  T   ++ AC   G +  G++L    ++  G     +    
Sbjct: 356 AMELFKRMQLDG--LEPDSNTLASLVVACSSDGTLFSGQQL-HAYTTKLGFASNDKIEGA 412

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           +++LYA+   +  A ++   +  +V+ +VL
Sbjct: 413 LLNLYAKCSDIETALNYF--LETEVENVVL 440


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/463 (35%), Positives = 248/463 (53%), Gaps = 48/463 (10%)

Query: 142 HSSVFKIGLDEDDHVSHSLI---TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           H+ + K GL      +  LI   +  +    +  A  +F  I   +   WN++I  Y+  
Sbjct: 27  HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              + A+ +F +M     LPD+ T    L SCG    +  G+ + G V+K  +  + ++ 
Sbjct: 87  PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS---------------- 302
           + LI +Y  CG +  AR + D M+ +DVV+WNA+++AYA+ GL                 
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNV 206

Query: 303 ----------------NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
                           +E ++LF  M++AGV PD  TL+ VLSACA +GAL  G+WV  Y
Sbjct: 207 VSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY 266

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
             + G+  D F           CGSI+ AL+VF      +  +WN++IS L+ +G    A
Sbjct: 267 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 326

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           L +F  M  EG   +PN+VTF+ VLSAC  AGL+DEGR +F+LM    G+ P  EHY CM
Sbjct: 327 LQIFSEMLVEG--FKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCM 384

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           VDL  R G L EA + V++MP+K   +V  +LLGAC+   N ++++RV Q LLE+    S
Sbjct: 385 VDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQES 444

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            ++V  S ++A++  W D  ++R  MR +GV K PGCS I +D
Sbjct: 445 SSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVD 487



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 213/431 (49%), Gaps = 57/431 (13%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN-------YASLLFHQIS 79
           +LS  +   S   + Q H  +L + +    F   R+I     N       YA  +F +I 
Sbjct: 10  ILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP 69

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            PN Y +N +IR    +    + +L +++QM    + PD +T+ F   SC +   +  G 
Sbjct: 70  NPNSYMWNTIIRAYANSPTPEA-ALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGR 128

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS--------- 190
            +H  V K GL +D  + ++LI +YA CG ++ AR + D + ERD+VSWN+         
Sbjct: 129 QIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERG 188

Query: 191 -----------------------MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
                                  MI+GYS  G   E + LF  M+     PD  TLVSVL
Sbjct: 189 LMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVL 248

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  +G L  G+WV  ++ KN + ++ ++ +AL+DMY KCG++  A  VF++ + KD+ 
Sbjct: 249 SACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIS 308

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----W 342
           TWN++I+  + +G    A+ +F+ M   G  P+++T + VLSAC+  G LD G+      
Sbjct: 309 TWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLM 368

Query: 343 VDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTN-EVSWNAMISALAFNGRAHE 394
           V  +  Q  + H     D+    G +++A ++ + MP     V W +++ A     R H 
Sbjct: 369 VHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGAC----RNHG 424

Query: 395 ALLLFERMSKE 405
            + L ER++++
Sbjct: 425 NVELAERVAQK 435


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 168/534 (31%), Positives = 291/534 (54%), Gaps = 46/534 (8%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           ++A  LF  +   +  ++N+M+  L+ +  +   +L +   M   G++ D+ TY     +
Sbjct: 245 DHALELFESMPERDVVSWNMMVSALSQS-GRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA L +L  G  +H+ V +     D +V+ +++ +YA+CG    AR+VF  +R+R+ VSW
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
             +I G+ + G   E++ELF +MR E    D+  L +++  C +  D+ L + +    +K
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ---------- 298
           +       + ++LI MY KCG L  A  +F +M  +D+V+W  M+TAY+Q          
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 299 -NGLSNEAIMLFNRMKYAGVN---------------------PDKITLIGVLSACASIGA 336
            +G+S   ++ +N M  A +                      PD +T + +   CA +GA
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
             LG  +  +  + GL  D             CG I +A K+F+ +   + VSWNAMI+ 
Sbjct: 544 NKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITG 603

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            + +G   +A+ +F+ M K+G  A+P+ ++++ VLS+C H+GLV EG+  FD++     +
Sbjct: 604 YSQHGMGKQAIEIFDDMLKKG--AKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNV 661

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EH+SCMVDL ARAG+L EA + ++ MP K    V GALL AC+   N ++++   +
Sbjct: 662 SPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAK 721

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            L +++S +SG Y++ +KI+A+     DSA++R LMR+KG+ K PG SW+ + +
Sbjct: 722 HLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKN 775



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 204/444 (45%), Gaps = 55/444 (12%)

Query: 52  IQKPNFLLIRII-----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKL 106
           I +PN +   I+      L   + A  LF ++ R +  ++N ++ G   +  ++  +++ 
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQS-GRFLDAMES 148

Query: 107 YYQMKRLGLK-PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165
           +  M+R G   P+ FT+     SC  L      + +   + K G   D  V+  ++ M+ 
Sbjct: 149 FVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFV 208

Query: 166 RCGKLDSARKVFDEIR-------------------------------ERDLVSWNSMISG 194
           RCG +D A K F +I                                ERD+VSWN M+S 
Sbjct: 209 RCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSA 268

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            S+ G A+EA+ +   M       D  T  S L +C  L  L  GK +   V+++   ++
Sbjct: 269 LSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCID 328

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            Y+ SA++++Y KCG    ARRVF ++ +++ V+W  +I  + Q G  +E++ LFN+M+ 
Sbjct: 329 PYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRA 388

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
             +  D+  L  ++S C++   + L + +   + + G    +            CG++ +
Sbjct: 389 ELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQN 448

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  +F  M   + VSW  M++A +  G   +A   F+ MS        N +T+  +L A 
Sbjct: 449 AESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTR------NVITWNAMLGAY 502

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIP 447
           +  G  ++G +++  M +   +IP
Sbjct: 503 IQHGAEEDGLKMYSAMLTEKDVIP 526



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 175/426 (41%), Gaps = 78/426 (18%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF-DEIRERDLV 186
           SC    AL    ++H  +  +GL     + ++L+  Y  CG L  AR +   +I E +++
Sbjct: 37  SCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVI 96

Query: 187 SWNSMISGYSKMGYAKEAVELFGRM--------------------------------REE 214
           + N M++GY+K+G   +A ELFGRM                                R  
Sbjct: 97  THNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSG 156

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           + LP+  T    + SCG LG   +   + G + K     +  + + ++DM+ +CGA+  A
Sbjct: 157 DSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFA 216

Query: 275 RR-------------------------------VFDAMVNKDVVTWNAMITAYAQNGLSN 303
            +                               +F++M  +DVV+WN M++A +Q+G + 
Sbjct: 217 SKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAR 276

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----------WVDKYASQRGL 352
           EA+ +   M   GV  D  T    L+ACA + +L  GK            +D Y +   +
Sbjct: 277 EALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMV 336

Query: 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG   +A +VF  +   N VSW  +I      G   E+L LF +M  E      +
Sbjct: 337 ELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE--LMTVD 394

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
                 ++S C +   +   R+L  L   S G        + ++ +YA+ G+L  A    
Sbjct: 395 QFALATIISGCSNRMDMCLARQLHSLSLKS-GHTRAVVISNSLISMYAKCGNLQNAESIF 453

Query: 473 ERMPEK 478
             M E+
Sbjct: 454 SSMEER 459


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 254/440 (57%), Gaps = 17/440 (3%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +N  + +H+ + + G  +D  +   L+   ++C  +D A ++F      ++  + ++I G
Sbjct: 52  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 111

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +   G   EA++L+ RM  E  LPD   + S+L +CG    L  G+ V    +K     N
Sbjct: 112 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSN 171

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAM----VNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
             +   ++++YGKCG L  ARRVF+ M    V KD V W AMI  + +N  +N A+  F 
Sbjct: 172 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFR 231

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+   V P++ T++ VLSAC+ +GAL++G+WV  Y  +  +  ++F           CG
Sbjct: 232 GMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCG 291

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SID+A  VF++M   + +++N MIS L+ NG++ +A+ LF  M   G   RP +VTF+GV
Sbjct: 292 SIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMV--GRRLRPTNVTFVGV 349

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC H GLVD G  +F  M+  + + P+ EHY CMVDL  R G L EA+D +  M    
Sbjct: 350 LNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTP 409

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+LG LL AC+  KN ++ ++V + L +   ++SG YV+ S ++A+   W ++A++RA
Sbjct: 410 DHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 469

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            M+E G+ K PGCS I +++
Sbjct: 470 KMKEAGMQKEPGCSSIEVNN 489



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 218/405 (53%), Gaps = 24/405 (5%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFH 76
           SL +++++SLL++      V  IH Q++ N   +  F++  ++         +YAS +F 
Sbjct: 36  SLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQ 95

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
               PN Y +  +I G  ++   Y  +++LY +M    + PDN+    +  +C + LAL 
Sbjct: 96  YTHNPNVYLYTALIDGFVSSGN-YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 154

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE----RDLVSWNSMI 192
            G  VHS   K+G   +  V   ++ +Y +CG+L  AR+VF+E+ E    +D V W +MI
Sbjct: 155 EGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMI 214

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
            G+ +      A+E F  M+ E   P+E T+V VL +C  LG L +G+WV  ++ K +++
Sbjct: 215 DGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 274

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           LN ++G+ALI+MY +CG++  A+ VFD M ++DV+T+N MI+  + NG S +AI LF  M
Sbjct: 275 LNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVM 334

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLG----------KWVDKYASQRGLRHDIF--CGS 360
               + P  +T +GVL+AC+  G +D G            V+      G   D+    G 
Sbjct: 335 VGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGR 394

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           +++A  +   M +T +   + M+  L    + H+ L L E+++KE
Sbjct: 395 LEEAYDLIRTMKMTPD---HIMLGTLLSACKMHKNLELGEQVAKE 436



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 167/357 (46%), Gaps = 53/357 (14%)

Query: 8   YSRHLAFTELNDPSLLREKLLSLLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIID 64
           YSR L  + L D  L+     S+LK C S    +  +++H++ L         + +RI++
Sbjct: 125 YSRMLHESILPDNYLM----ASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIME 180

Query: 65  L----KDFNYASLLFHQISR----PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           L     +   A  +F ++       +   +  MI G     ++ + +L+ +  M+   ++
Sbjct: 181 LYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRN-EETNRALEAFRGMQGENVR 239

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P+ FT   V  +C+ L AL  G  VHS + K  ++ +  V ++LI MY+RCG +D A+ V
Sbjct: 240 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 299

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC--GDLG 234
           FDE+++RD++++N+MISG S  G +++A+ELF  M      P  +T V VL +C  G L 
Sbjct: 300 FDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLV 359

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D        GF + + M                      AR   D  V   +  +  M+ 
Sbjct: 360 DF-------GFEIFHSM----------------------AR---DYRVEPQIEHYGCMVD 387

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
              + G   EA  L   MK   + PD I L  +LSAC     L+LG+ V K    RG
Sbjct: 388 LLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG 441


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 179/552 (32%), Positives = 291/552 (52%), Gaps = 62/552 (11%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPN 82
            +SL+    +   + QIH Q++I+ +   + +  ++I      K  N++  +F+     N
Sbjct: 84  FISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKN 143

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            + FN +IRGLTT    + +++  +  M R G+KPD  TYPFV  S A L +   G+++H
Sbjct: 144 LFTFNALIRGLTTN-SHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIH 202

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-----DLVSWNSMISGYSK 197
             + + G++ D  V  SL+ MY +  KL SA KVFDE  ER       + WN +I G  K
Sbjct: 203 CMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCK 262

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  K+AV+LF  M ++E +                       W                
Sbjct: 263 AGSMKKAVKLFKAMPKKENV----------------------SW---------------- 284

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            S LID + K G +  A  +FD M  K+VV+W  M+  +++NG S +A+ +F++M   GV
Sbjct: 285 -STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGV 343

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALK 366
            P+  T++  LSACA IG L+ G  + KY    GL           D++  CG+I+ A +
Sbjct: 344 RPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASE 403

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF +    +  +W  MI   A +G + +A+  F++M   G   +P++V F+ +L+AC+H+
Sbjct: 404 VFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAG--IKPDEVVFLALLTACMHS 461

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           G VD G   FD M   + + P  +HY+ +VD+  R+G L EA  F+ERMP   D ++ GA
Sbjct: 462 GQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGA 521

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           L  AC+  K T +++  +  LL++E +++GNY+  S  +A L  W+D+ ++R LM+ +GV
Sbjct: 522 LFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGV 581

Query: 547 SKTPGCSWIGID 558
            K  G S I ++
Sbjct: 582 HKNSGWSCIEVE 593


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 183/571 (32%), Positives = 304/571 (53%), Gaps = 34/571 (5%)

Query: 14  FTELNDPSLLREKLL--SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDLKDF 68
           F E+ +  +L +K    ++++ C    +++    +H Q+++       F+   ++++   
Sbjct: 209 FCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNM--- 265

Query: 69  NYASL--------LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
            YA L        +F+ ++  N+ ++N MI G T+    +  +  L+ +MK     P+ +
Sbjct: 266 -YAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN-GLHLEAFDLFVRMKNGACTPNMY 323

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE- 179
           T   V  +   L+ +N G  V +   ++G++ +  V  +LI MY++CG L  AR VFD  
Sbjct: 324 TLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTN 383

Query: 180 -IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            I       WN+MISGYS+ G ++EA+EL+ +M +     D  T  SV  +      L  
Sbjct: 384 FINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQF 443

Query: 239 GKWVEGFVVKNKMDLNFY-MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           G+ V G V+K  +DL    + +A+ D Y KCG L   R+VFD M  +D+V+W  ++TAY+
Sbjct: 444 GRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYS 503

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--- 354
           Q+ L  EA+  F  M+  G  P++ T   VL +CAS+  L+ G+ V     + GL     
Sbjct: 504 QSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKC 563

Query: 355 ------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                 D++  CGSI +A KVF+ +   + VSW A+IS  A +G   +AL LF RM   G
Sbjct: 564 IESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSG 623

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
              + N VT + VL AC H G+V+EG   F  M   +G++P+ EHY+C++DL  R G L 
Sbjct: 624 --IKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLD 681

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           +A +F+ +MP + +E+V   LLG C+   N ++ +   + +L I    S  YV+ S  + 
Sbjct: 682 DAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYI 741

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
               ++D   +R +M+++GV K PG SWI +
Sbjct: 742 ETGSYEDGLSLRNVMKDQGVKKEPGYSWISV 772



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 245/474 (51%), Gaps = 27/474 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQ---IHTQML-INFIQKPNFLLIR-----IIDLKDFNYASLLF 75
           + L+ +L+ C    ++++   +H  +L  NF  K   +L            +F  A  +F
Sbjct: 119 QDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVF 178

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
            ++ + N +++ VMI G +T    +    K + +M   G+ PD F Y  +  SC  L +L
Sbjct: 179 DEMPQRNVFSWTVMIVG-STEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSL 237

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  VH+ +   G      VS SL+ MYA+ G ++ +  VF+ + E + VSWN+MISG 
Sbjct: 238 ELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGC 297

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           +  G   EA +LF RM+     P+  TLVSV  + G L D+ +GK V+    +  ++ N 
Sbjct: 298 TSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNV 357

Query: 256 YMGSALIDMYGKCGALVPARRVFDA-MVNKDVVT-WNAMITAYAQNGLSNEAIMLFNRMK 313
            +G+ALIDMY KCG+L  AR VFD   +N  V T WNAMI+ Y+Q+G S EA+ L+ +M 
Sbjct: 358 LVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMC 417

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------------CGSI 361
             G+  D  T   V +A A+  +L  G+ V     + GL   +             CG +
Sbjct: 418 QNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFL 477

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           +D  KVF+ M   + VSW  +++A + +    EAL  F  M +EG A  PN  TF  VL 
Sbjct: 478 EDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA--PNQFTFSSVLI 535

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           +C     ++ GR++  L+  + GL  +    S ++D+YA+ G ++EA    +++
Sbjct: 536 SCASLCFLEYGRQVHGLLCKA-GLDTEKCIESALIDMYAKCGSITEAGKVFDKI 588


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 295/559 (52%), Gaps = 26/559 (4%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-----KDFN 69
           + +N P LL   LL    K  S    +Q H  ++ + ++   F+   ++ L      D  
Sbjct: 55  SRINKP-LLYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSL 113

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
               +F  +   +  ++  MI G      K   +++L++ M   G++P+ FT   V  +C
Sbjct: 114 LTRRVFDGLFVKDVVSWASMITGYVRE-GKSGIAIELFWDMLDSGIEPNGFTLSAVIKAC 172

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + +  L  G   H  V + G D +  +  SLI MY R      AR++FDE+ E D V W 
Sbjct: 173 SEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWT 232

Query: 190 SMISGYSKMGYAKEAVELFG-RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           ++IS +++    +EA+  F  + R     PD  T  SVL +CG+LG L  G+ +   V+ 
Sbjct: 233 TVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIA 292

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
                N    S+L+DMYGKCGA+  ++R+FD M N++ V+W+A++  Y  NG   +A+ L
Sbjct: 293 YGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNL 352

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYASQRGLRHDIF---------- 357
           F  MK      D  +   V+ ACA + A+  GK +  +Y  + G R  I           
Sbjct: 353 FREMK----EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAK 408

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG I+ A +VF+ MP  N ++WN+MI   A NG +  A+ +FE M KEG   +P+ ++FI
Sbjct: 409 CGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEG--IKPDCISFI 466

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           G+L AC H GLVD+ R  FDLM+  +G+ P  EHY+CMVDL  RAG L EA + +E    
Sbjct: 467 GLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAEC 526

Query: 478 KVDEIVLGALLGACQKQ-KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
           + D  +   LLGAC     N+  ++R+ + L+E+E     +YV  + ++  +  WDD+ K
Sbjct: 527 RNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAVGRWDDAVK 586

Query: 537 MRALMREKGVSKTPGCSWI 555
           +R LM+ + + K PG SW+
Sbjct: 587 VRELMKNRQLKKMPGQSWM 605


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 282/508 (55%), Gaps = 32/508 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMI-----RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           A +LF +++  +  ++  +I     RGL         +++L+ +M++ GL+PD      V
Sbjct: 275 ACILFPELTEKDVVSWTGLIGAYCRRGLAR------EAVELFQEMEQSGLQPDEVLVSCV 328

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
                +   +N G + H+ + +    +   +++SLI+MY +   +D A  VF  + +RD 
Sbjct: 329 LSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDD 388

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
            SW+ M++GY K G   + +EL+ +M+    +EFL D  +LVS + SC  LG L LG+ V
Sbjct: 389 ESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSV 448

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD-AMVNKDVVTWNAMITAYAQNGL 301
             + +K  +D N    S LI MYG+CG    A ++F  A + +DVVTWNA+I++Y+  G 
Sbjct: 449 HCYSIKCLLDENSITNS-LIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGR 507

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           SN+A+ L+ +M    V P+  TLI V+SACA++ AL+ G+ +  Y    GL  D+     
Sbjct: 508 SNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTA 567

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG +  A  +F+ M   + V+WN MIS    +G A++AL LF  M  E G+ +
Sbjct: 568 LVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEM--EAGSIK 625

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN +TF+ +LSAC HAGLVDEGR+LF  M   + L P  +HY+CMVDL  ++G L EA D
Sbjct: 626 PNSLTFLAILSACCHAGLVDEGRKLFIRMGG-YRLEPNLKHYACMVDLLGKSGLLQEAED 684

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            V  MP K D  V G LL AC+   N ++  RV +     +  N G Y++ S  + + + 
Sbjct: 685 LVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEK 744

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           WD+  K+R  M+  GV K  G  W  +D
Sbjct: 745 WDEIEKLRDTMKNYGVEK--GVGWSAVD 770



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 194/388 (50%), Gaps = 21/388 (5%)

Query: 109 QMKRL----GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           QM RL    G +P++ T      +C  L  L+ G  +H    K G+ +   V  +L +MY
Sbjct: 207 QMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMY 266

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
           ++C   + A  +F E+ E+D+VSW  +I  Y + G A+EAVELF  M +    PDE+ + 
Sbjct: 267 SKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVS 326

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
            VL   G   ++  GK     +++     +  + ++LI MYGK   +  A  VF  +  +
Sbjct: 327 CVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQR 386

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP---DKITLIGVLSACASIGALDLGK 341
           D  +W+ M+  Y + GL  + + L+ +M+    +    D  +L+  +S+C+ +G L LG+
Sbjct: 387 DDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQ 446

Query: 342 WVDKYASQRGLRHDIF----------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNG 390
            V  Y+ +  L  +            CG+ + A K+F    +  + V+WNA+IS+ +  G
Sbjct: 447 SVHCYSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVG 506

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           R+++AL L+ +M  E    +PN  T I V+SAC +   ++ G  L   +  + GL     
Sbjct: 507 RSNDALSLYGQMLTED--VKPNSSTLITVISACANLAALEHGELLHSYV-KNMGLESDVS 563

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + +VD+Y + G L  A    + M ++
Sbjct: 564 ISTALVDMYTKCGQLGTARGIFDSMLQR 591



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/498 (27%), Positives = 228/498 (45%), Gaps = 23/498 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
            +A+L F     P+ + +N ++R    A   +  +L  + +M+  G +P  FT P    +
Sbjct: 64  GFATLAFSASPCPDTFLWNSLLRSHHCA-SDFDSALSAHRRMRASGARPSRFTAPLAASA 122

Query: 129 CANLLALNHGVSVHSSVFKIGL---DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
            A L AL  G SVHS   K GL   D    VS SL+ MYARCG L  A K+FDE+ ERD+
Sbjct: 123 AAELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDV 182

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRM----REEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           V+W +++SG  + G   + +    +M     +    P+  T+ S L +CG LG+L  G+ 
Sbjct: 183 VAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRC 242

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + G+ VK  +     + SAL  MY KC     A  +F  +  KDVV+W  +I AY + GL
Sbjct: 243 LHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGL 302

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
           + EA+ LF  M+ +G+ PD++ +  VLS   S   ++ GK       +R     +   + 
Sbjct: 303 AREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANS 362

Query: 361 ----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                     +D A  VF  +   ++ SW+ M++     G   + L L+ +M        
Sbjct: 363 LISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEF 422

Query: 411 PNDVT-FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
             D+T  +  +S+C   G +  G+ +     S   L+ ++   + ++ +Y R G+   A 
Sbjct: 423 LCDITSLVSAISSCSRLGRLRLGQSVH--CYSIKCLLDENSITNSLIGMYGRCGNFELAC 480

Query: 470 DFVERMPEKVDEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
                   + D +   AL+ +     ++ D      Q+L E    NS   +      ANL
Sbjct: 481 KIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANL 540

Query: 529 KMWDDSAKMRALMREKGV 546
              +    + + ++  G+
Sbjct: 541 AALEHGELLHSYVKNMGL 558



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 193/468 (41%), Gaps = 69/468 (14%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+     GL      +  L++ Y+  G    A   F      D   WNS++  +     
Sbjct: 34  LHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASD 93

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM---DLNFYM 257
              A+    RMR     P   T      +  +L  L +G  V  + VK  +   D +  +
Sbjct: 94  FDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAV 153

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY--- 314
            S+L+ MY +CG+L  A ++FD MV +DVV W A+++   +NG   + I    +M     
Sbjct: 154 SSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAG 213

Query: 315 -AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G  P+  T+   L AC  +G L  G+ +  YA + G+R               C   +
Sbjct: 214 DSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTE 273

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA  +F ++   + VSW  +I A    G A EA+ LF+ M + G   +P++V    VLS 
Sbjct: 274 DACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSG--LQPDEVLVSCVLSG 331

Query: 423 CVHAGLVDEGR----------------------------RLFDLMSSSFGLIPK--SEHY 452
              +  V+ G+                             L D+  + FG++ +   E +
Sbjct: 332 LGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESW 391

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEK------VDEIVLGALLGACQKQKNTDVSQRV--- 503
           S MV  Y +AG   +  +   +M  +       D   L + + +C +     + Q V   
Sbjct: 392 SLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCY 451

Query: 504 -MQLLLEIES-SNS--------GNYVISSKIFANLKMWDDSAKMRALM 541
            ++ LL+  S +NS        GN+ ++ KIFA  K+  D     AL+
Sbjct: 452 SIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALI 499


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 304/561 (54%), Gaps = 29/561 (5%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKP----NFLLIRIIDL-KDFN 69
           +E++  S L   LL   +K  S     Q H  ++ + ++      N LL     L  D  
Sbjct: 54  SEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMR 113

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
               +F  +   +  ++  M+ G   A +++  +L+++ +M   GL+P+ FT      +C
Sbjct: 114 ETRRVFDGMFVKDAISWTSMMSGYV-ASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKAC 172

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
             L  +  G   H  V   G + +  +S +L  MY    +   AR+VFDE+ E D++ W 
Sbjct: 173 FELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWT 232

Query: 190 SMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           +++S +SK    +EA+ LF  M R +  +PD  T  +VL +CG+L  L  GK + G ++ 
Sbjct: 233 AVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLIT 292

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N +  N  + S+L+DMYGK G++  AR+VF+ M  K++V+W+A++  Y QNG   +AI +
Sbjct: 293 NGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEM 352

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F  M+      D      VL ACA + A+ LGK +     +RG   ++            
Sbjct: 353 FREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGK 408

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            G ID A +V+  M V N ++WNAM+SALA NGR  EA+  F  M K+G   +P+ ++FI
Sbjct: 409 SGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKG--IKPDYISFI 466

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            VL+AC H GLV+EGR  F LM+ S+G+ P +EHYSCM+DL  RAG   EA + ++R   
Sbjct: 467 AVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAEC 526

Query: 478 KVDEIVLGALLGACQKQKNTD---VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           + D  + G LLG C    NTD   +++R+ + ++E+E     +YV+ S ++  +    D+
Sbjct: 527 RNDASLWGVLLGPC--AANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDA 584

Query: 535 AKMRALMREKGVSKTPGCSWI 555
            K+R LM  +GV+KT G SWI
Sbjct: 585 LKIRKLMVRRGVAKTVGQSWI 605


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 183/571 (32%), Positives = 304/571 (53%), Gaps = 34/571 (5%)

Query: 14  FTELNDPSLLREKLL--SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDLKDF 68
           F E+ +  +L +K    ++++ C    +++    +H Q+++       F+   ++++   
Sbjct: 155 FCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNM--- 211

Query: 69  NYASL--------LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
            YA L        +F+ ++  N+ ++N MI G T+    +  +  L+ +MK     P+ +
Sbjct: 212 -YAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN-GLHLEAFDLFVRMKNGACTPNMY 269

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE- 179
           T   V  +   L+ +N G  V +   ++G++ +  V  +LI MY++CG L  AR VFD  
Sbjct: 270 TLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTN 329

Query: 180 -IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
            I       WN+MISGYS+ G ++EA+EL+ +M +     D  T  SV  +      L  
Sbjct: 330 FINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQF 389

Query: 239 GKWVEGFVVKNKMDLNFY-MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           G+ V G V+K  +DL    + +A+ D Y KCG L   R+VFD M  +D+V+W  ++TAY+
Sbjct: 390 GRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYS 449

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--- 354
           Q+ L  EA+  F  M+  G  P++ T   VL +CAS+  L+ G+ V     + GL     
Sbjct: 450 QSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKC 509

Query: 355 ------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                 D++  CGSI +A KVF+ +   + VSW A+IS  A +G   +AL LF RM   G
Sbjct: 510 IESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSG 569

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
              + N VT + VL AC H G+V+EG   F  M   +G++P+ EHY+C++DL  R G L 
Sbjct: 570 --IKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLD 627

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           +A +F+ +MP + +E+V   LLG C+   N ++ +   + +L I    S  YV+ S  + 
Sbjct: 628 DAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYI 687

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
               ++D   +R +M+++GV K PG SWI +
Sbjct: 688 ETGSYEDGLSLRNVMKDQGVKKEPGYSWISV 718



 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 144/423 (34%), Positives = 225/423 (53%), Gaps = 18/423 (4%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           +F  A  +F ++ + N +++ VMI G +T    +    K + +M   G+ PD F Y  + 
Sbjct: 116 EFRAACGVFDEMPQRNVFSWTVMIVG-STEHGLFFDGFKFFCEMLNSGILPDKFAYSAII 174

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            SC  L +L  G  VH+ +   G      VS SL+ MYA+ G ++ +  VF+ + E + V
Sbjct: 175 QSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQV 234

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWN+MISG +  G   EA +LF RM+     P+  TLVSV  + G L D+ +GK V+   
Sbjct: 235 SWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA 294

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA-MVNKDVVT-WNAMITAYAQNGLSNE 304
            +  ++ N  +G+ALIDMY KCG+L  AR VFD   +N  V T WNAMI+ Y+Q+G S E
Sbjct: 295 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQE 354

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ L+ +M   G+  D  T   V +A A+  +L  G+ V     + GL   +        
Sbjct: 355 ALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIA 414

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG ++D  KVF+ M   + VSW  +++A + +    EAL  F  M +EG A  PN
Sbjct: 415 DAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA--PN 472

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
             TF  VL +C     ++ GR++  L+  + GL  +    S ++D+YA+ G ++EA    
Sbjct: 473 QFTFSSVLISCASLCFLEYGRQVHGLLCKA-GLDTEKCIESALIDMYAKCGSITEAGKVF 531

Query: 473 ERM 475
           +++
Sbjct: 532 DKI 534


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 254/462 (54%), Gaps = 16/462 (3%)

Query: 112  RLGLKPDNFTYPFVFISCANLLALNH---GVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
            R GLKPD FT   V  +C+      +   G  VH    K G+  D  VS +LI +Y++ G
Sbjct: 988  RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGG 1047

Query: 169  KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            K+D A  +     + DL SWN+++ GY K   +++A+E F  M E     DEITL + + 
Sbjct: 1048 KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIK 1107

Query: 229  SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
            + G L +L  GK ++ + +K   + + ++ S ++DMY KCG +  A  +F  +   D V 
Sbjct: 1108 ASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVA 1167

Query: 289  WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
            W  MI+ Y +NG  + A+ +++ M+ +GV PD+ T   ++ A + + AL+ GK +     
Sbjct: 1168 WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227

Query: 349  QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            +     D F           CGS+ DA +VF  M V   V WNAM+  LA +G   EAL 
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALN 1287

Query: 398  LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            LF  M   G   +P+ VTFIGVLSAC H+GL  E  + FD M  ++G+ P+ EHYSC+VD
Sbjct: 1288 LFRTMQSNG--IQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVD 1345

Query: 458  LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
               RAG + EA + +  MP K    +  ALLGAC+ + + + ++RV   LL ++ S+S  
Sbjct: 1346 ALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSA 1405

Query: 518  YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            YV+ S I+A  + WDD    R +M+ K V K PG SWI + +
Sbjct: 1406 YVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 214/459 (46%), Gaps = 47/459 (10%)

Query: 27   LLSLLKKCPSTKTVQ------QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
            L S+L+ C +    +      Q+H   +   I   +F+   +IDL       + A  L H
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 77   QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
                 +  ++N ++ G   +  K   +L+ +  M  +G+  D  T      +   L+ L 
Sbjct: 1058 GKYDFDLASWNAIMFGYIKS-NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLK 1116

Query: 137  HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
             G  + +   K+G + D  VS  ++ MY +CG + +A ++F EI   D V+W +MISGY 
Sbjct: 1117 QGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYI 1176

Query: 197  KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
            + G    A+ ++  MR     PDE T  +++ +   L  L  GK +   VVK    L+ +
Sbjct: 1177 ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHF 1236

Query: 257  MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            +G++L+DMY KCG++  A RVF  M  + VV WNAM+   AQ+G  +EA+ LF  M+  G
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNG 1296

Query: 317  VNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTN 375
            + PDK+T IGVLSAC+  G      K+ D                      +F+   +T 
Sbjct: 1297 IQPDKVTFIGVLSACSHSGLFSEAYKYFD---------------------AMFKTYGITP 1335

Query: 376  EVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
            E+  ++ ++ AL   GR  EA  +   M  +  A+      +  +L AC   G  +  +R
Sbjct: 1336 EIEHYSCLVDALGRAGRIQEAENVIASMPFKASAS-----MYRALLGACRTKGDAETAKR 1390

Query: 435  LFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFV 472
            + D +     L P  S  Y  + ++YA     S  WD V
Sbjct: 1391 VADKL---LALDPSDSSAYVLLSNIYA----ASRQWDDV 1422



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 218/442 (49%), Gaps = 28/442 (6%)

Query: 70   YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            YA  +F      N +A+N  +     A Q  + ++  +  + R  +  D+ T   +  + 
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVA-AIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 130  ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
                 L+ G  +H+ V K        VS+SL+ MY++ G + +A K F    E DL+SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 190  SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC--GDLGD-LVLGKWVEGFV 246
            +MIS Y++     EA+  F  +  +   PD+ TL SVL +C  GD G+   LG  V  + 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +K  +  + ++ +ALID+Y K G +  A  +     + D+ +WNA++  Y ++  S +A+
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084

Query: 307  MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
              F+ M   G+  D+ITL   + A   +  L  GK +  YA + G  +D++         
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMY 1144

Query: 358  --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
              CG + +AL++F ++   +EV+W  MIS    NG    AL ++  M   G   +P++ T
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG--VQPDEYT 1202

Query: 416  FIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFV 472
            F  ++ A      +++G+++  +++   + L    +H+  + +VD+Y + G + +A+   
Sbjct: 1203 FATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 473  ERMPEKVDEIVL--GALLGACQ 492
             +M   V ++V     LLG  Q
Sbjct: 1259 RKM--DVRKVVFWNAMLLGLAQ 1278



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 26/350 (7%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G   H+ +   G   D +++++LITMY++CG L SAR+VFD+  +RDLV+WNS+++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 195 YSKMGYAK-----EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           Y++   +      E   LFG +RE  F    +TL  +L  C   G + + + V G+ VK 
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +L+ ++  AL+++Y K G +  AR +FD M  +D V WN M+ AY +N   +EA+  F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369
           +    +G  PD   L  V+    S    D+     ++A Q              A+K+F 
Sbjct: 807 SAFHRSGFFPDFSNLHCVIGGVNS----DVSNNRKRHAEQVKAY----------AMKMFP 852

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
               +N  +WN  ++     G+   A+  F+ + +       + VT + +LSA V A  +
Sbjct: 853 FDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS--TIGHDSVTLVIILSAAVGADDL 910

Query: 430 DEGRRLFDL-MSSSFG-LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           D G ++  L + SSF  ++P S   + ++++Y++AG +  A       PE
Sbjct: 911 DLGEQIHALVIKSSFAPVVPVS---NSLMNMYSKAGVVYAAEKTFINSPE 957



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           + DL LGK     +V +    + Y+ + LI MY KCG+L  AR+VFD   ++D+VTWN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 293 ITAYAQNGLSN-----EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           + AYAQ   S+     E   LF  ++  G +  ++TL  +L  C   G + + + V  YA
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 348 SQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G   D+F            G +  A  +F+ MP  + V WN M+ A   N    EAL
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 397 LLFERMSKEG 406
             F    + G
Sbjct: 804 RFFSAFHRSG 813


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 180/504 (35%), Positives = 271/504 (53%), Gaps = 18/504 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +   +  ++N +I GL    +    + + +++M+R G  P NFT      SCA
Sbjct: 441 ACSVFELMVEKDSVSWNSLISGLDQN-ECSEDAAESFHRMRRTGSMPSNFTLISTLSSCA 499

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L  +  G  +H    K+GLD D  VS++L+ +YA  G      KVF  + E D VSWNS
Sbjct: 500 SLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNS 559

Query: 191 MISGYS-KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +I   S       +AV+ F +M    +    +T +++L +   L    +   +   V+K 
Sbjct: 560 VIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKY 619

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMV-NKDVVTWNAMITAYAQNGLSNEAIML 308
            +  +  +G+AL+  YGKCG +    ++F  M   +D V+WN+MI+ Y  N L ++A+ L
Sbjct: 620 CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDL 679

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
              M   G   D  T   +LSACAS+  L+ G  V     +  L  D+            
Sbjct: 680 VWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSK 739

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG ID A + FE MP+ N  SWN+MIS  A +G   +AL LF RM  +G    P+ VTF+
Sbjct: 740 CGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP--PDHVTFV 797

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVLSAC H G V+EG   F  MS  + L P+ EH+SCMVDL  RAG L E  DF+  MP 
Sbjct: 798 GVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPM 857

Query: 478 KVDEIVLGALLGACQKQ--KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           K + ++   +LGAC +   +NT++ +R  ++LLE+E  N+ NYV+ + ++A+ + W+D A
Sbjct: 858 KPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVA 917

Query: 536 KMRALMREKGVSKTPGCSWIGIDD 559
           K R  M+E  V K  GCSW+ + D
Sbjct: 918 KARTAMKEAAVKKEAGCSWVTMKD 941



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 221/471 (46%), Gaps = 53/471 (11%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISC 129
           A  +F Q+   N  + N ++ GL    Q  + + K++++MK L G+  D++       S 
Sbjct: 336 AKNIFEQMGVRNVVSMNGLMVGLVKQKQGEA-AAKVFHEMKDLVGINSDSYVVLLSAFSE 394

Query: 130 ANLL--ALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            ++L      G  VH+ V + GL+++   + + L+ MYA+ G +  A  VF+ + E+D V
Sbjct: 395 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 454

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNS+ISG  +   +++A E F RMR    +P   TL+S L SC  LG ++LG+ +    
Sbjct: 455 SWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDG 514

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS-NEA 305
           +K  +D +  + +AL+ +Y + G      +VF  M   D V+WN++I A + +  S ++A
Sbjct: 515 LKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQA 574

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           +  F +M   G    ++T I +LSA +S+   ++   +     +  L  D          
Sbjct: 575 VKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 634

Query: 358 ---CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
              CG +++  K+F  M  T +EVSWN+MIS    N   H+A+ L   M ++G   R + 
Sbjct: 635 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKG--QRLDS 692

Query: 414 VTFIGVLSACVHAGLVDEGRRL----------------------------FDLMSSSFGL 445
            TF  +LSAC     ++ G  +                             D  S  F L
Sbjct: 693 FTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFEL 752

Query: 446 IPKSEHYS--CMVDLYARAGHLSEAWDFVERM---PEKVDEIVLGALLGAC 491
           +P    YS   M+  YAR GH  +A     RM    +  D +    +L AC
Sbjct: 753 MPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSAC 803



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 215/466 (46%), Gaps = 42/466 (9%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           L+S L  C S   +   +QIH   L       +   N LL    +   F     +F  + 
Sbjct: 491 LISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP 550

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             ++ ++N +I  L+ +    S ++K + QM R G      T+  +  + ++L       
Sbjct: 551 EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSH 610

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKM 198
            +H+ V K  L +D  + ++L++ Y +CG+++   K+F  + E RD VSWNSMISGY   
Sbjct: 611 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHN 670

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               +A++L   M ++    D  T  ++L +C  +  L  G  V    ++  ++ +  +G
Sbjct: 671 ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVG 730

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           SAL+DMY KCG +  A R F+ M  ++V +WN+MI+ YA++G   +A+ LF RM   G  
Sbjct: 731 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 790

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS 378
           PD +T +GVLSAC+ +G +           + G  H           +V+   P     S
Sbjct: 791 PDHVTFVGVLSACSHVGFV-----------EEGFEH------FKSMSEVYRLSPRVEHFS 833

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG--LVDEGRRLF 436
              M+  L   G+  E       M       +PN + +  VL AC  A     + GRR  
Sbjct: 834 --CMVDLLGRAGKLDEVGDFINSM-----PMKPNVLIWRTVLGACCRANGRNTELGRRAA 886

Query: 437 DLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           +++     L P++  +Y  + ++YA      E W+ V +    + E
Sbjct: 887 EML---LELEPQNAVNYVLLANMYASG----EKWEDVAKARTAMKE 925



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 150/547 (27%), Positives = 246/547 (44%), Gaps = 48/547 (8%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML-INFIQK---PNFLLIRIIDLKDFNY 70
           T L   S   E L++  +    ++  +++H Q +   F+      N L+   + + D   
Sbjct: 65  TTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGS 124

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC- 129
           A  LF ++S  N   +  +I G T    K   +   +  M R G  P+++ +     +C 
Sbjct: 125 AQKLFDEMSNRNLVTWACLISGYTQN-GKPDEACARFRDMVRAGFIPNHYAFGSALRACQ 183

Query: 130 -ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS---ARKVFDEIRERDL 185
            +       GV +H  + K     D  V + LI+MY  C  LDS   AR VFD I  R+ 
Sbjct: 184 ESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSC--LDSANDARSVFDGIGIRNS 241

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREE----EFLPDEIT---LVSVLGSCGDLGDLVL 238
           +SWNS+IS YS+ G A  A +LF  M++E     F P+E T   L++   S  D G  VL
Sbjct: 242 ISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVL 301

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
            + +   V K+    + Y+ SAL+  + + G    A+ +F+ M  ++VV+ N ++    +
Sbjct: 302 EQML-ARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVK 360

Query: 299 NGLSNEAIMLFNRMK-YAGVNPDKITLIGVLSACASIGALD----LGKWVDKYASQRGLR 353
                 A  +F+ MK   G+N D   ++  LSA +    L+     G+ V  +  + GL 
Sbjct: 361 QKQGEAAAKVFHEMKDLVGINSDSYVVL--LSAFSEFSVLEEGRRKGREVHAHVIRTGLN 418

Query: 354 HDIFC------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
            +               G+I DA  VFE M   + VSWN++IS L  N  + +A   F R
Sbjct: 419 DNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHR 478

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M + G  + P++ T I  LS+C   G +  G ++        GL       + ++ LYA 
Sbjct: 479 MRRTG--SMPSNFTLISTLSSCASLGWIMLGEQI-HCDGLKLGLDTDVSVSNALLALYAE 535

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
            G  +E       MPE  D++   +++GA    + + VSQ V   L  +     G + +S
Sbjct: 536 TGCFTECLKVFSLMPE-YDQVSWNSVIGALSDSEAS-VSQAVKYFLQMMR----GGWGLS 589

Query: 522 SKIFANL 528
              F N+
Sbjct: 590 RVTFINI 596



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 22/302 (7%)

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ + LI++Y + G L  A+++FD M N+++VTW  +I+ Y QNG  +EA   F  M 
Sbjct: 105 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 164

Query: 314 YAGVNPDKITLIGVLSACASIG--ALDLGKWVDKYASQRGLRHDIF-CG----------- 359
            AG  P+       L AC   G     LG  +    S+     D+  C            
Sbjct: 165 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 224

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG--GAARPNDVTFI 417
           S +DA  VF+ + + N +SWN++IS  +  G A  A  LF  M KEG   + +PN+ TF 
Sbjct: 225 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFG 284

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSF---GLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
            +++    +  VD G  + + M +     G +      S +V  +AR G   +A +  E+
Sbjct: 285 SLITTACSS--VDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQ 342

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           M  + + + +  L+    KQK  + + +V   + ++   NS +YV+    F+   + ++ 
Sbjct: 343 MGVR-NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEG 401

Query: 535 AK 536
            +
Sbjct: 402 RR 403


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 254/462 (54%), Gaps = 16/462 (3%)

Query: 112  RLGLKPDNFTYPFVFISCANLLALNH---GVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
            R GLKPD FT   V  +C+      +   G  VH    K G+  D  VS +LI +Y++ G
Sbjct: 988  RDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGG 1047

Query: 169  KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            K+D A  +     + DL SWN+++ GY K   +++A+E F  M E     DEITL + + 
Sbjct: 1048 KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIK 1107

Query: 229  SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
            + G L +L  GK ++ + +K   + + ++ S ++DMY KCG +  A  +F  +   D V 
Sbjct: 1108 ASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVA 1167

Query: 289  WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
            W  MI+ Y +NG  + A+ +++ M+ +GV PD+ T   ++ A + + AL+ GK +     
Sbjct: 1168 WTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVV 1227

Query: 349  QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
            +     D F           CGS+ DA +VF  M V   V WNAM+  LA +G   EAL 
Sbjct: 1228 KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALN 1287

Query: 398  LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
            LF  M   G   +P+ VTFIGVLSAC H+GL  E  + FD M  ++G+ P+ EHYSC+VD
Sbjct: 1288 LFRTMQSNG--IQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVD 1345

Query: 458  LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
               RAG + EA + +  MP K    +  ALLGAC+ + + + ++RV   LL ++ S+S  
Sbjct: 1346 ALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSA 1405

Query: 518  YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            YV+ S I+A  + WDD    R +M+ K V K PG SWI + +
Sbjct: 1406 YVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 214/459 (46%), Gaps = 47/459 (10%)

Query: 27   LLSLLKKCPSTKTVQ------QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
            L S+L+ C +    +      Q+H   +   I   +F+   +IDL       + A  L H
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 77   QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
                 +  ++N ++ G   +  K   +L+ +  M  +G+  D  T      +   L+ L 
Sbjct: 1058 GKYDFDLASWNAIMFGYIKS-NKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLK 1116

Query: 137  HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
             G  + +   K+G + D  VS  ++ MY +CG + +A ++F EI   D V+W +MISGY 
Sbjct: 1117 QGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYI 1176

Query: 197  KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
            + G    A+ ++  MR     PDE T  +++ +   L  L  GK +   VVK    L+ +
Sbjct: 1177 ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHF 1236

Query: 257  MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            +G++L+DMY KCG++  A RVF  M  + VV WNAM+   AQ+G  +EA+ LF  M+  G
Sbjct: 1237 VGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNG 1296

Query: 317  VNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTN 375
            + PDK+T IGVLSAC+  G      K+ D                      +F+   +T 
Sbjct: 1297 IQPDKVTFIGVLSACSHSGLFSEAYKYFD---------------------AMFKTYGITP 1335

Query: 376  EVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
            E+  ++ ++ AL   GR  EA  +   M  +  A+      +  +L AC   G  +  +R
Sbjct: 1336 EIEHYSCLVDALGRAGRIQEAENVIASMPFKASAS-----MYRALLGACRTKGDAETAKR 1390

Query: 435  LFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFV 472
            + D +     L P  S  Y  + ++YA     S  WD V
Sbjct: 1391 VADKL---LALDPSDSSAYVLLSNIYA----ASRQWDDV 1422



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 218/442 (49%), Gaps = 28/442 (6%)

Query: 70   YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            YA  +F      N +A+N  +     A Q  + ++  +  + R  +  D+ T   +  + 
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVA-AIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 130  ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
                 L+ G  +H+ V K        VS+SL+ MY++ G + +A K F    E DL+SWN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 190  SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC--GDLGD-LVLGKWVEGFV 246
            +MIS Y++     EA+  F  +  +   PD+ TL SVL +C  GD G+   LG  V  + 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +K  +  + ++ +ALID+Y K G +  A  +     + D+ +WNA++  Y ++  S +A+
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKAL 1084

Query: 307  MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
              F+ M   G+  D+ITL   + A   +  L  GK +  YA + G  +D++         
Sbjct: 1085 EHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMY 1144

Query: 358  --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
              CG + +AL++F ++   +EV+W  MIS    NG    AL ++  M   G   +P++ T
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG--VQPDEYT 1202

Query: 416  FIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFV 472
            F  ++ A      +++G+++  +++   + L    +H+  + +VD+Y + G + +A+   
Sbjct: 1203 FATLIKASSCLTALEQGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 473  ERMPEKVDEIVL--GALLGACQ 492
             +M   V ++V     LLG  Q
Sbjct: 1259 RKM--DVRKVVFWNAMLLGLAQ 1278



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 26/350 (7%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G   H+ +   G   D +++++LITMY++CG L SAR+VFD+  +RDLV+WNS+++ 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 195 YSKMGYAK-----EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           Y++   +      E   LFG +RE  F    +TL  +L  C   G + + + V G+ VK 
Sbjct: 687 YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
             +L+ ++  AL+++Y K G +  AR +FD M  +D V WN M+ AY +N   +EA+  F
Sbjct: 747 GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369
           +    +G  PD   L  V+    S    D+     ++A Q              A+K+F 
Sbjct: 807 SAFHRSGFXPDFSNLHCVIGGVNS----DVSNNRKRHAEQVKAY----------AMKMFP 852

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
               +N  +WN  ++     G+   A+  F+ + +       + VT + +LSA V A  +
Sbjct: 853 FDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS--TIGHDSVTLVIILSAAVGADDL 910

Query: 430 DEGRRLFDL-MSSSFG-LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           D G ++  L + SSF  ++P S   + ++++Y++AG +  A       PE
Sbjct: 911 DLGEQIHALVIKSSFAPVVPVS---NSLMNMYSKAGVVYAAEKTFINSPE 957



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 44/352 (12%)

Query: 71   ASLLFHQISRPNEYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            A LLF ++   +   +NVM++  +  ++Q    +L+ +    R G  PD     F  + C
Sbjct: 771  ARLLFDKMPERDAVLWNVMLKAYVENSFQ--DEALRFFSAFHRSGFXPD-----FSNLHC 823

Query: 130  ANLLALNHGVSVHSSVFKIGLDEDDHVSHS-LITMYARCGKLDSARKVFDEIRERDLVSW 188
              +  +N  VS            ++   H+  +  YA         K+F   +  ++ +W
Sbjct: 824  V-IGGVNSDVS------------NNRKRHAEQVKAYAM--------KMFPFDQGSNIFAW 862

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            N  ++ +   G    A++ F  +       D +TLV +L +     DL LG+ +   V+K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 249  NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
            +       + ++L++MY K G +  A + F      D+++WN MI++YAQN L  EAI  
Sbjct: 923  SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGA---LDLGKWVDKYASQRGLRHDIFC------- 358
            F  +   G+ PD+ TL  VL AC++        LG  V  YA + G+ +D F        
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 359  ----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                G +D+A  +       +  SWNA++     + ++ +AL  F  M + G
Sbjct: 1043 YSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMG 1094



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           + DL LGK     +V +    + Y+ + LI MY KCG+L  AR+VFD   ++D+VTWN++
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 293 ITAYAQNGLSN-----EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           + AYAQ   S+     E   LF  ++  G +  ++TL  +L  C   G + + + V  YA
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 348 SQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G   D+F            G +  A  +F+ MP  + V WN M+ A   N    EAL
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 397 LLFERMSKEG 406
             F    + G
Sbjct: 804 RFFSAFHRSG 813


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 261/469 (55%), Gaps = 16/469 (3%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANL---LALNHGVSVHSSVFKIG-LDEDDHVS 157
            +L  +  M RLGL+P++FT+P  F + A+     A   G  VH+   + G L +D  VS
Sbjct: 98  QALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAAVGPQVHALALRFGYLPDDAFVS 157

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
            + + MY + G+L  AR++FDE+  R++V+WN++++     G   E VE +  +R    +
Sbjct: 158 CAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGM 217

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           P+ +++ +   +C  +  L LG+   GFV K   D +  + ++++D YGKC  +  AR V
Sbjct: 218 PNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLV 277

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD M  ++ V+W +M+ AYAQNG   EA +++   + AG  P    +  +L+ CA +  L
Sbjct: 278 FDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGL 337

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           DLG+ +   A++  +  +IF           CG I DA +VF +MP  N V+WNAMI   
Sbjct: 338 DLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGY 397

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A  G A  AL +F+ M   G    PN +T + VL+AC   GL  EG  LF  M   FG+ 
Sbjct: 398 AHIGDAWNALAVFDEMIM-GRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIE 456

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P+ EHY+C+VDL  RAG   +A++ ++ MP +    V GALLG C+    T++ +   + 
Sbjct: 457 PRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEK 516

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           L E++  +SGN+V+ S + A+   W ++  +R  M+  G+ K PG SWI
Sbjct: 517 LFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWI 565



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 173/346 (50%), Gaps = 15/346 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   N  A+N ++       +    +++ Y+ ++  G  P+  +    F +CA
Sbjct: 173 ARRLFDEMPNRNVVAWNAVMTNAVLDGRPI-ETVEAYFGLRGAGGMPNVVSVCAFFNACA 231

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +  L+ G   H  V K G D+D  VS+S++  Y +C  +  AR VFD +  R+ VSW S
Sbjct: 232 GMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCS 291

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M+  Y++ G  +EA  ++   R     P +  + S+L +C  L  L LG+ +     ++ 
Sbjct: 292 MVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSC 351

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D N ++ SAL+DMYGKCG +  A +VF  M  +++VTWNAMI  YA  G +  A+ +F+
Sbjct: 352 IDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFD 411

Query: 311 RMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQR-GLRHDI-----------F 357
            M       P+ IT++ VL+AC+  G    G  + +   QR G+   I            
Sbjct: 412 EMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGR 471

Query: 358 CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
            G  + A ++ + MP+   +S W A++     +G+     +  E++
Sbjct: 472 AGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEKL 517


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 285/547 (52%), Gaps = 21/547 (3%)

Query: 29  SLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S  + C   P   T +Q+H   + N       +   I+D+     +   A   F  +   
Sbjct: 257 SAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHH 316

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N    N M+ GL       + +++L+  M R G+  D  +   VF +CA +     G+ V
Sbjct: 317 NVETCNAMMVGLVRTGLG-AEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQV 375

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G D D  V ++++ +Y +C  L  A  VF E+ +RD VSWN++I+   +    
Sbjct: 376 HCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECY 435

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++ +     M      PD+ T  SVL +C  L  L  G  V G  +K+ + L+ ++ S +
Sbjct: 436 EDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTV 495

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCGA+  A+++ D +  +++V+WN++I+ ++    S EA   F+ M   GV PD 
Sbjct: 496 VDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDH 555

Query: 322 ITLIGVLSACASIGALDLGKWV-----------DKYASQRGLRHDIFCGSIDDALKVFED 370
            T   VL  CA++  ++LGK +           D+Y S   +     CG++ D+L +FE 
Sbjct: 556 FTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK 615

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + VSWNAMI   A +G+  EAL +FERM +      PN  TF+ VL AC H GL+D
Sbjct: 616 ARKLDFVSWNAMICGYALHGQGLEALEMFERMQRAN--VVPNHATFVAVLRACSHVGLLD 673

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +G + F LM+S + L+P+ EH++CMVD+  R+    EA +F+  MP + D +V   LL  
Sbjct: 674 DGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSI 733

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+ +++ +V++     +L ++  ++  Y++ S ++A    W D ++ R LMR+  + K P
Sbjct: 734 CKIRQDVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEP 793

Query: 551 GCSWIGI 557
           GCSWI +
Sbjct: 794 GCSWIEV 800



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 231/492 (46%), Gaps = 35/492 (7%)

Query: 21  SLLREKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASL 73
           +L R  L  LLK C     +    QIH   +   ++        ++D+    +  + A  
Sbjct: 148 ALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALR 207

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
            FH +   N  ++   I G     ++Y+  ++L+ QM+RLGL      Y   F SCA + 
Sbjct: 208 FFHGMGERNSVSWGAAIAGCVQN-EQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMP 266

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L+    +H+   K     D  V  +++ +YA+ G L  AR+ F  +   ++ + N+M+ 
Sbjct: 267 CLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMV 326

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G  + G   EA++LF  M       D I+L  V  +C ++     G  V    VK+  D+
Sbjct: 327 GLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDV 386

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  + +A++D+YGKC ALV A  VF  M  +D V+WNA+I A  QN    + I   N M 
Sbjct: 387 DVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEML 446

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD  T   VL ACA + +L+ G  V   A + GL  D F           CG+I 
Sbjct: 447 RSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAIT 506

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +A K+ + +     VSWN++IS  +   ++ EA   F  M   G   +P+  T+  VL  
Sbjct: 507 EAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMG--VKPDHFTYATVLDT 564

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDFVERMP 476
           C +   ++ G+++        G I K E        S +VD+YA+ G++ ++    E+  
Sbjct: 565 CANLATIELGKQI-------HGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK-A 616

Query: 477 EKVDEIVLGALL 488
            K+D +   A++
Sbjct: 617 RKLDFVSWNAMI 628



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 231/500 (46%), Gaps = 26/500 (5%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           LL +  +C  T     +   M        N +L   +   D + A+ LF  +  P+  ++
Sbjct: 60  LLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSW 119

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N +I G       + +S+ L  +M R G+  D  T   +  SC  L  L  GV +H+   
Sbjct: 120 NTLISGYCQHGM-FRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAV 178

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           K GL+ D     +L+ MY +C  LD A + F  + ER+ VSW + I+G  +       +E
Sbjct: 179 KTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGME 238

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           LF +M+       +    S   SC  +  L   + +    +KN    +  +G+A++D+Y 
Sbjct: 239 LFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYA 298

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           K G LV ARR F  + + +V T NAM+    + GL  EA+ LF  M  +GV  D I+L G
Sbjct: 299 KAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSG 358

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
           V SACA +     G  V   A + G   D+            C ++ +A  VF++M   +
Sbjct: 359 VFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRD 418

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----VHAGLVD 430
            VSWNA+I+AL  N    + +     M + G    P+D T+  VL AC     +  GLV 
Sbjct: 419 SVSWNAIIAALEQNECYEDTIAHLNEMLRSG--MEPDDFTYGSVLKACAGLQSLEYGLVV 476

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G+ +     S  GL   +   S +VD+Y + G ++EA    +R+  + + +   +++  
Sbjct: 477 HGKAI----KSGLGL--DAFVSSTVVDMYCKCGAITEAQKLHDRIGGQ-ELVSWNSIISG 529

Query: 491 CQKQKNTDVSQRVMQLLLEI 510
               K ++ +QR    +L++
Sbjct: 530 FSLTKQSEEAQRFFSEMLDM 549



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 182/419 (43%), Gaps = 46/419 (10%)

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
            F++ +   + A   AL  G + H+ +   G      VS+ L+ MYARCG    A  VFD
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP-------------------- 218
            +  RD VSWN+M++ Y   G    A  LFG M + + +                     
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL 138

Query: 219 -----------DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
                      D  TL  +L SCG L DL LG  +    VK  ++ +   GSAL+DMYGK
Sbjct: 139 SMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK 198

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           C +L  A R F  M  ++ V+W A I    QN      + LF +M+  G+   +      
Sbjct: 199 CRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASA 258

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNE 376
             +CA++  L   + +  +A +     D   G+           + DA + F  +P  N 
Sbjct: 259 FRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNV 318

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
            + NAM+  L   G   EA+ LF+ M++ G     + ++  GV SAC       +G ++ 
Sbjct: 319 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSG--VGFDVISLSGVFSACAEVKGYFQGLQVH 376

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
            L   S G        + ++DLY +   L EA+   + M E+ D +   A++ A ++ +
Sbjct: 377 CLAVKS-GFDVDVCVRNAILDLYGKCKALVEAYLVFQEM-EQRDSVSWNAIIAALEQNE 433


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 166/437 (37%), Positives = 262/437 (59%), Gaps = 13/437 (2%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G++ H+ + ++GL  D   S+ L+ MY++CG ++SARK+FDE+  R LVSWN+M+  +++
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G +++A+ LF +M++E     E T+ SV+ +C     +   K + GF +K  +D N ++
Sbjct: 126 NGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 185

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+AL+D+Y KCG +  A  VF+ M  +  VTW++M+  Y QN L  EA++LF+R +  G+
Sbjct: 186 GTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 245

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
             ++ T+   LSACA+  AL  GK V     + G+  +IF           CG I++A  
Sbjct: 246 EHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYI 305

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  +   N V WNAM+S  + + R+ EA++ FE+M + G    PN++T+I VL+AC H 
Sbjct: 306 VFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGIC--PNEITYISVLTACSHL 363

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLV++GR+ FDLM     + P   HYSCMVD+  RAG L EA D ++RMP      + G+
Sbjct: 364 GLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGS 423

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL +C+  +N + ++   + L EIE  N+GN+V+ S I+A    W++ A+ R L++E   
Sbjct: 424 LLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVARARNLLKESKA 483

Query: 547 SKTPGCSWIGIDDPKQS 563
            K  G SWI I     S
Sbjct: 484 KKERGKSWIEIKHKVHS 500



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 177/339 (52%), Gaps = 20/339 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +  ++N M+ G  T       +L L+ QM++ G+    FT   V  +CA
Sbjct: 101 ARKLFDEMPVRSLVSWNTMV-GSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACA 159

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               +     +H    K  LD +  V  +L+ +YA+CG +  A  VF+ + ER  V+W+S
Sbjct: 160 AKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSS 219

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M++GY +    +EA+ LF R +      ++ T+ S L +C     L+ GK V+  + K  
Sbjct: 220 MVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTG 279

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  N ++ S+LIDMY KCG +  A  VF ++  K+VV WNAM++ ++++  S EA++ F 
Sbjct: 280 IGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFE 339

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370
           +M+  G+ P++IT I VL+AC+ +G ++ G+   KY               D  ++V   
Sbjct: 340 KMQQMGICPNEITYISVLTACSHLGLVEKGR---KY--------------FDLMIRVHNV 382

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
            P  N + ++ M+  L   G  HEA  L +RM  +  A+
Sbjct: 383 SP--NVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATAS 419


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 268/479 (55%), Gaps = 55/479 (11%)

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
           P V  +CA+L  + HG ++H+   K G+D D  +  SL+ MYA+CG +  +RKVFD + E
Sbjct: 98  PLVLKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPE 157

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-- 240
           R+ V+WN+MI GY   G +K AV LF +M     +   +T + ++      GD    +  
Sbjct: 158 RNAVTWNAMICGYLGNGDSKSAVLLFEKMS----IRTAVTWIEMIDGFARSGDTETARRF 213

Query: 241 -------------W---VEGFVVKNKMDL-----------NFYMGSALIDMYGKCGALVP 273
                        W   V+G+    +M+            NF+  S++I  Y K G +  
Sbjct: 214 FDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKE 273

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           AR +FD +  +++V WN++I+ YAQNG S EA+  F +M+  G  PD++T+  VLSAC+ 
Sbjct: 274 ARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQ 333

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           +G LD GK +    + +G++ + F           CG + +A  +FE M   N   WN+M
Sbjct: 334 LGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSM 393

Query: 383 ISALAFNGRAHEALLLFERM--SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           IS  A +G++ EAL  F RM  S EG    P+++TF+ VLSAC H G V+ G  +F  M 
Sbjct: 394 ISGFAIHGQSKEALEFFGRMEDSHEG----PDEITFLSVLSACAHGGFVNAGLEIFSRM- 448

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS 500
             +GL    +HY C++DL  RAG + EA+D ++RMP K +++V GALLGAC+   + +++
Sbjct: 449 EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMA 508

Query: 501 QRVMQLLLEIESSNS----GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            RV++ +++++S+ S     +YV+ S I+A    W+ + KMR  M  KG  KT GCS I
Sbjct: 509 DRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 567



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 4/227 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F +I   N   +N +I G   A   +S  +L+ + +M+  G +PD  T   V  +C
Sbjct: 274 ARSIFDRIPVRNLVNWNSLISGY--AQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSAC 331

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L  L+ G  +H  +   G+  +  V + L+ MYA+CG L +AR +F+ +  R+   WN
Sbjct: 332 SQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWN 391

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMISG++  G +KEA+E FGRM +    PDEIT +SVL +C   G +  G  +   + K 
Sbjct: 392 SMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKY 451

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
            +         LID+ G+ G +  A  +   M V  + V W A++ A
Sbjct: 452 GLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGA 498


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 274/506 (54%), Gaps = 28/506 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF QI  P+  ++N +I       +  + +L L+  M+ +GL  D FT   V  +C 
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGET-APALGLFSGMREMGLDMDGFTLSAVITACC 151

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWN 189
           + + L     +HS     G D    V+++L+T Y + G LD A++VF  +   RD VSWN
Sbjct: 152 DDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI  Y +     +A+ LF  M       D  TL SVL +   L DL  G    G ++K 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 250 KMDLNFYMGSALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEAIM 307
               N ++GS LID+Y KCG  +   R+VF+ +   D+V WN M++ Y+QN     +A+ 
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI----------- 356
            F +M+  G  P+  + + V+SAC+++ +   GK +   A    L+ DI           
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA----LKSDIPSNRISVDNAL 385

Query: 357 -----FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG++ DA ++F+ M   N VS N+MI+  A +G   E+L LF+ M +   A  P
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA--P 443

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
             +TFI VLSAC H G V+EG   F++M   F + P++EHYSCM+DL  RAG LSEA + 
Sbjct: 444 TSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENL 503

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           + RMP     I   +LLGAC+   N +++ +    +L++E SN+  YV+ S ++A+   W
Sbjct: 504 IARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRW 563

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGI 557
           ++ A +R  MR++GV K PGCSWI +
Sbjct: 564 EEVATVRKFMRDRGVKKKPGCSWIEV 589



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 197/427 (46%), Gaps = 50/427 (11%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK------------ 175
           +C     L+ G S+HS   K  +    + S+  I +Y++CG+L  ARK            
Sbjct: 17  TCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFS 76

Query: 176 -------------------VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                              +FD+I E DLVS+N++IS Y+  G    A+ LF  MRE   
Sbjct: 77  FNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGL 136

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D  TL +V+ +C D  D+ L   +    V +  D    + +AL+  YGK G L  A+R
Sbjct: 137 DMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKR 194

Query: 277 VFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           VF  M   +D V+WN+MI AY Q+   ++A+ LF  M   G+N D  TL  VL+A   + 
Sbjct: 195 VFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLE 254

Query: 336 ALDLGKWVDKYASQRGLRHDIFCGS------------IDDALKVFEDMPVTNEVSWNAMI 383
            L  G        + G   +   GS            + D  KVFE++   + V WN M+
Sbjct: 255 DLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314

Query: 384 SALAFNGRAHE-ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           S  + N    E AL  F +M  +G   RPND +F+ V+SAC +     +G+++  L   S
Sbjct: 315 SGYSQNEEFLEDALECFRQM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKS 372

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
                +    + ++ +Y++ G+L +A    +RM E  + + L +++    +      S  
Sbjct: 373 DIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEH-NTVSLNSMIAGYAQHGIEMESLH 431

Query: 503 VMQLLLE 509
           + Q +LE
Sbjct: 432 LFQWMLE 438



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 54/284 (19%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR--------- 276
           +L +C    DL  GK +    +K+ +  + Y  +  I +Y KCG L  AR+         
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 277 ----------------------VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
                                 +FD +   D+V++N +I+AYA  G +  A+ LF+ M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 315 AGVNPDKITLIGVLSACAS----IGALD---LGKWVDKYASQRG--LRHDIFCGSIDDAL 365
            G++ D  TL  V++AC      IG L    +    D Y S     L +    G +DDA 
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAK 193

Query: 366 KVFEDM-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-- 422
           +VF  M  + +EVSWN+MI A   +    +AL LF+ M + G     +  T   VL+A  
Sbjct: 194 RVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG--LNVDMFTLASVLTAFT 251

Query: 423 CVH---AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           C+     GL   G+ +        G    S   S ++DLY++ G
Sbjct: 252 CLEDLSGGLQFHGQLI------KTGFHQNSHVGSGLIDLYSKCG 289


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 290/549 (52%), Gaps = 33/549 (6%)

Query: 41  QQIHTQMLI-------------NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFN 87
           + IHTQ+LI             N IQ  N L+   +       A  LF ++S  +  ++N
Sbjct: 32  KSIHTQLLIRNQSSTHHSYREFNIIQ-LNSLINLYVKCSKLRLARYLFDEMSLRSVVSYN 90

Query: 88  VMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147
           V++ G   + + +   +KL+  M     +P+ + +  V  +CA+   +  G+  H  +FK
Sbjct: 91  VLMGGYLHSGE-HLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFK 149

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-----ERDLVSWNSMISGYSKMGYAK 202
            GL     V  SL+ MY++C  +D A +V +        + D   +NS+++   + G   
Sbjct: 150 FGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLG 209

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           EAVE+ GRM +E  + D +T VSV+G CG + DL LG  V   ++K  +  + ++GS L+
Sbjct: 210 EAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLV 269

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DM+GKCG ++ AR+VFD + N++VV W +++TAY QNG   E + L + M   G   ++ 
Sbjct: 270 DMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEF 329

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T   +L+A A + AL  G  +     + G+++ +            CG ID +  VF DM
Sbjct: 330 TFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDM 389

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + ++WNAMI   + +G   +ALLLF+ M   G    PN VTF+GVLSAC H  LV+E
Sbjct: 390 RNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGEC--PNHVTFVGVLSACAHLALVNE 447

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G    + +   F + P  EHY+C+V +  RAG L EA +F+     K D +    LL AC
Sbjct: 448 GFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNAC 507

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
              +N ++  ++ + +L+++  + G Y + S ++A  + WD    +R +MRE+ V K PG
Sbjct: 508 NIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPG 567

Query: 552 CSWIGIDDP 560
            SWI I + 
Sbjct: 568 VSWIEIRNA 576


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 261/469 (55%), Gaps = 13/469 (2%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
            +L+ +++M   G KP  F       SCA LL    GV +H+ + + G +++  ++ +L+
Sbjct: 84  EALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 143

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            +YA+C  +  A++VFD + + D VSW S+ISG+SK G  KEA+  F  M   +  P+ +
Sbjct: 144 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 203

Query: 222 TLVSVLGSCGDLGDLV-LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           T VSV+ +C  L  +      +   VVK    +  ++ S LID Y KCG +  A  +F  
Sbjct: 204 TYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGT 263

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
            + +D + +N+MI+ Y+QN    EA+ LF  M+  G+NP   TL  +L+AC S+  L  G
Sbjct: 264 TIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQG 323

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           + V    ++ G   ++F           CGSID+A  VF+     N V W +MI+  A +
Sbjct: 324 RQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQS 383

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           GR  E L LFER+  E G   P+ + F  VL+AC HAG +D+G   F+ M   +GL+P  
Sbjct: 384 GRGPEGLGLFERLVTEEGFT-PDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDL 442

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           + Y+C+VDLY R GHL +A + +E +P + + ++ G+ L +C+     ++ +     L +
Sbjct: 443 DQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFK 502

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +E  ++  YV  + I+A   +W +  ++R LM++KG+ K+ G SW+ +D
Sbjct: 503 MEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEVD 551



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 141/447 (31%), Positives = 213/447 (47%), Gaps = 41/447 (9%)

Query: 42  QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
           QIH +++    +   FL   ++DL         A  +F  + + ++ ++  +I G +   
Sbjct: 122 QIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKN- 180

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL-NHGVSVHSSVFKIGLDEDDHV 156
            +   ++  + +M    +KP+  TY  V  +C  L  + +    +H+ V K+G      V
Sbjct: 181 GRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFV 240

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
              LI  Y++CG++D A  +F    ERD + +NSMISGYS+  + +EA++LF  MR    
Sbjct: 241 VSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGL 300

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            P + TL S+L +CG L  L  G+ V   V K   + N ++ SAL+DMY KCG++  AR 
Sbjct: 301 NPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARC 360

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIG 335
           VFD  V K+ V W +MIT YAQ+G   E + LF R+    G  PD I    VL+AC   G
Sbjct: 361 VFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAG 420

Query: 336 ALDLGKWVDKYASQR---GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            LD G  +D +   R   GL  D+      D      D+ V               NG  
Sbjct: 421 FLDKG--IDYFNQMRRDYGLVPDL------DQYACLVDLYVR--------------NGHL 458

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH- 451
            +A  L E +  E     PN V +   LS+C   G  + GR   D +   F + P S   
Sbjct: 459 RKAKELMEAIPCE-----PNSVMWGSFLSSCKLYGEAELGREAADKL---FKMEPCSTAP 510

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEK 478
           Y  M  +YA+AG  SE  +  + M +K
Sbjct: 511 YVAMASIYAQAGLWSEVVEIRKLMKQK 537



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 147/295 (49%), Gaps = 15/295 (5%)

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           +K    +EA+E F RM      P +  L + L SC  L +  LG  +   +++   + N 
Sbjct: 77  AKHANVREALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 136

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           ++ SAL+D+Y KC A+V A+RVFD M   D V+W ++I+ +++NG   EAI+ F  M  +
Sbjct: 137 FLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGS 196

Query: 316 GVNPDKITLIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
            + P+ +T + V+SAC  +  + D    +  +  + G     F           CG ID 
Sbjct: 197 QIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQ 256

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A+ +F      + + +N+MIS  + N    EAL LF  M   G    P D T   +L+AC
Sbjct: 257 AVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNG--LNPTDHTLTSILNAC 314

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
               ++ +GR++  L+ +  G        S ++D+Y++ G + EA    ++  EK
Sbjct: 315 GSLTILQQGRQVHSLV-AKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEK 368


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 274/506 (54%), Gaps = 28/506 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF QI  P+  ++N +I       +  + +L L+  M+ +GL  D FT   V  +C 
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGET-APALGLFSGMREMGLDMDXFTLSAVITACC 151

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWN 189
           + + L     +HS     G D    V+++L+T Y + G LD A++VF  +   RD VSWN
Sbjct: 152 DDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI  Y +     +A+ LF  M       D  TL SVL +   L DL  G    G ++K 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 250 KMDLNFYMGSALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEAIM 307
               N ++GS LID+Y KCG  +   R+VF+ +   D+V WN M++ Y+QN     +A+ 
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
            F +M+  G  P+  + + V+SAC+++ +   GK +   A    L+ DI           
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA----LKSDIPSNRISVDNAL 385

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG++ DA ++F+ M   N VS N+MI+  A +G   E+L LF+ M +   A  P
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA--P 443

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
             +TFI VLSAC H G V+EG   F++M   F + P++EHYSCM+DL  RAG LSEA + 
Sbjct: 444 TSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENL 503

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           + RMP     I   +LLGAC+   N +++ +    +L++E SN+  YV+ S ++A+   W
Sbjct: 504 IARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRW 563

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGI 557
           ++ A +R  MR++GV K PGCSWI +
Sbjct: 564 EEVATVRKFMRDRGVKKKPGCSWIEV 589



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 197/427 (46%), Gaps = 50/427 (11%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK------------ 175
           +C     L+ G S+HS   K  +    + S+  I +Y++CG+L  ARK            
Sbjct: 17  TCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFS 76

Query: 176 -------------------VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                              +FD+I E DLVS+N++IS Y+  G    A+ LF  MRE   
Sbjct: 77  FNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGL 136

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D  TL +V+ +C D  D+ L   +    V +  D    + +AL+  YGK G L  A+R
Sbjct: 137 DMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKR 194

Query: 277 VFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           VF  M   +D V+WN+MI AY Q+   ++A+ LF  M   G+N D  TL  VL+A   + 
Sbjct: 195 VFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLE 254

Query: 336 ALDLGKWVDKYASQRGLRHDIFCGS------------IDDALKVFEDMPVTNEVSWNAMI 383
            L  G        + G   +   GS            + D  KVFE++   + V WN M+
Sbjct: 255 DLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314

Query: 384 SALAFNGRAHE-ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           S  + N    E AL  F +M  +G   RPND +F+ V+SAC +     +G+++  L   S
Sbjct: 315 SGYSQNEEFLEDALECFRQM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKS 372

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
                +    + ++ +Y++ G+L +A    +RM E  + + L +++    +      S  
Sbjct: 373 DIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEH-NTVSLNSMIAGYAQHGIEMESLH 431

Query: 503 VMQLLLE 509
           + Q +LE
Sbjct: 432 LFQWMLE 438



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 54/284 (19%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR--------- 276
           +L +C    DL  GK +    +K+ +  + Y  +  I +Y KCG L  AR+         
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 277 ----------------------VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
                                 +FD +   D+V++N +I+AYA  G +  A+ LF+ M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 315 AGVNPDKITLIGVLSACAS----IGALD---LGKWVDKYASQRG--LRHDIFCGSIDDAL 365
            G++ D  TL  V++AC      IG L    +    D Y S     L +    G +DDA 
Sbjct: 134 MGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAK 193

Query: 366 KVFEDM-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-- 422
           +VF  M  + +EVSWN+MI A   +    +AL LF+ M + G     +  T   VL+A  
Sbjct: 194 RVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG--LNVDMFTLASVLTAFT 251

Query: 423 CVH---AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           C+     GL   G+ +        G    S   S ++DLY++ G
Sbjct: 252 CLEDLSGGLQFHGQLI------KTGFHQNSHVGSGLIDLYSKCG 289


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 258/458 (56%), Gaps = 19/458 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P   T+  +  SCA   +L+ G+ VH  +   G D+D  ++  LI MY   G +D ARKV
Sbjct: 76  PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKV 135

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG----D 232
           FDE RER +  WN++    + +G  KE ++L+ +M       D  T   VL +C      
Sbjct: 136 FDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELS 195

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           +  L  GK +   ++++  + N ++ + L+D+Y K G++  A  VF AM  K+ V+W+AM
Sbjct: 196 VSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           I  +A+N +  +A+ LF  M     +  P+ +T++ VL ACA + AL+ GK +  Y  +R
Sbjct: 256 IACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRR 315

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           GL   +            CG I    +VF++M   + VSWN++IS    +G   +A+ +F
Sbjct: 316 GLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIF 375

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           E M  +G +  P+ ++FI VL AC HAGLV+EG+ LF+ M S + + P  EHY+CMVDL 
Sbjct: 376 ENMIHQGSS--PSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLL 433

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA   +E M  +    V G+LLG+C+   N ++++R   LL E+E  N+GNYV
Sbjct: 434 GRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYV 493

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + + I+A  KMW ++  +  L+  +G+ K PGCSWI +
Sbjct: 494 LLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEV 531



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 225/474 (47%), Gaps = 49/474 (10%)

Query: 11  HLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLK 66
           HL   E N      E L+    +  S      +H +++ +   +  FL  ++I    +L 
Sbjct: 68  HLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELG 127

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
             + A  +F +      Y +N + R L          L LY QM  +G+  D FTY FV 
Sbjct: 128 SIDRARKVFDETRERTIYVWNALFRALAMVGCG-KELLDLYVQMNWIGIPSDRFTYTFVL 186

Query: 127 ISCA----NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
            +C     ++  L  G  +H+ + + G + + HV  +L+ +YA+ G +  A  VF  +  
Sbjct: 187 KACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPT 246

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREE--EFLPDEITLVSVLGSCGDLGDLVLGK 240
           ++ VSW++MI+ ++K     +A+ELF  M  E  + +P+ +T+V+VL +C  L  L  GK
Sbjct: 247 KNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGK 306

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            + G++++  +D    + +ALI MYG+CG ++  +RVFD M N+DVV+WN++I+ Y  +G
Sbjct: 307 LIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHG 366

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHD 355
              +AI +F  M + G +P  I+ I VL AC+  G ++ GK      + KY    G+ H 
Sbjct: 367 FGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEH- 425

Query: 356 IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
                                  +  M+  L    R  EA+ L E M  E     P    
Sbjct: 426 -----------------------YACMVDLLGRANRLDEAIKLIEDMHFE-----PGPTV 457

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEA 468
           +  +L +C     V+   R   L+   F L P++  +Y  + D+YA A   SEA
Sbjct: 458 WGSLLGSCRIHCNVELAERASTLL---FELEPRNAGNYVLLADIYAEAKMWSEA 508


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 272/480 (56%), Gaps = 20/480 (4%)

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           M+ G  T  +++  +L+++ +M   GL  + FT      +C+ L  +  G   H  V   
Sbjct: 134 MMSGYVTG-KEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITH 192

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G + +  +S +L  +Y    +   AR+VFDE+ E D++ W +++S +SK    +EA+ LF
Sbjct: 193 GFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF 252

Query: 209 GRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
             M R +  +PD  T  +VL +CG+L  L  GK + G ++ N +  N  + S+L+DMYGK
Sbjct: 253 YAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGK 312

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           CG++  AR+VF+ M  K+ V+W+A++  Y QNG   +AI +F  M+      D      V
Sbjct: 313 CGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME----EKDLYCFGTV 368

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNE 376
           L ACA + A+ LGK +     +RG   ++             G ID A +V+  M + N 
Sbjct: 369 LKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNM 428

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           ++WNAM+SALA NGR  EA+  F  M K+G   +P+ ++FI +L+AC H G+VDEGR  F
Sbjct: 429 ITWNAMLSALAQNGRGEEAVSFFNDMVKKG--IKPDYISFIAILTACGHTGMVDEGRNYF 486

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
            LM+ S+G+ P +EHYSCM+DL  RAG   EA + +ER   + D  + G LLG C    +
Sbjct: 487 VLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANAD 546

Query: 497 -TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            + V++R+ + ++E+E     +YV+ S ++  +    D+  +R LM  +GV+KT G SWI
Sbjct: 547 ASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWI 606



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 179/348 (51%), Gaps = 22/348 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISC 129
           A  +F ++  P+   +  ++   +     Y  +L L+Y M R  GL PD  T+  V  +C
Sbjct: 217 ARRVFDEMPEPDVICWTAVLSAFSKN-DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTAC 275

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
            NL  L  G  +H  +   G+  +  V  SL+ MY +CG +  AR+VF+ + +++ VSW+
Sbjct: 276 GNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWS 335

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +++ GY + G  ++A+E+F  M E+    D     +VL +C  L  + LGK + G  V+ 
Sbjct: 336 ALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRR 391

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               N  + SALID+YGK G +  A RV+  M  ++++TWNAM++A AQNG   EA+  F
Sbjct: 392 GCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFF 451

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF-- 357
           N M   G+ PD I+ I +L+AC   G +D G+         Y  + G  H     D+   
Sbjct: 452 NDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGR 511

Query: 358 CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSK 404
            G  ++A  + E     N+ S W  ++   A N    +A  + ER++K
Sbjct: 512 AGLFEEAENLLERAECRNDASLWGVLLGPCAANA---DASRVAERIAK 556



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 192/384 (50%), Gaps = 25/384 (6%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEI 180
           Y  +  +C  + +  HG+  H+ V K GL+ D +V +SL+++Y + G  +   R+VFD  
Sbjct: 64  YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
             +D +SW SM+SGY       +A+E+F  M       +E TL S + +C +LG++ LG+
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGR 183

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
              G V+ +  + N ++ S L  +YG     V ARRVFD M   DV+ W A+++A+++N 
Sbjct: 184 CFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKND 243

Query: 301 LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           L  EA+ LF  M +  G+ PD  T   VL+AC ++  L  GK +       G+  ++   
Sbjct: 244 LYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVE 303

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CGS+ +A +VF  M   N VSW+A++     NG   +A+ +F  M ++   
Sbjct: 304 SSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK--- 360

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFD--LMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
              +   F  VL AC     V  G+ +    +    FG +      S ++DLY ++G + 
Sbjct: 361 ---DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE---SALIDLYGKSGCID 414

Query: 467 EAWDFVERMPEKVDEIVLGALLGA 490
            A     +M  + + I   A+L A
Sbjct: 415 SASRVYSKMSIR-NMITWNAMLSA 437



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 22/332 (6%)

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           K+G   EA+ +       E         S+L +C  +   + G      VVK+ ++ +  
Sbjct: 38  KLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRN 97

Query: 257 MGSALIDMYGKCG-ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           +G++L+ +Y K G  +   RRVFD    KD ++W +M++ Y       +A+ +F  M   
Sbjct: 98  VGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSF 157

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI-----------DDA 364
           G++ ++ TL   + AC+ +G + LG+         G   + F  S             DA
Sbjct: 158 GLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDA 217

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            +VF++MP  + + W A++SA + N    EAL LF  M +  G   P+  TF  VL+AC 
Sbjct: 218 RRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLV-PDGSTFGTVLTACG 276

Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
           +   + +G+ +   L+++  G     E  S ++D+Y + G + EA      M +K + + 
Sbjct: 277 NLRRLKQGKEIHGKLITNGIGSNVVVE--SSLLDMYGKCGSVREARQVFNGMSKK-NSVS 333

Query: 484 LGALLGA-CQKQKNTDVSQRVMQLLLEIESSN 514
             ALLG  CQ  ++    ++ +++  E+E  +
Sbjct: 334 WSALLGGYCQNGEH----EKAIEIFREMEEKD 361


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 269/477 (56%), Gaps = 27/477 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+ +  M  LG+K        +  +C++   +  G  +HS +   G + +  V+++++T
Sbjct: 144 ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMT 203

Query: 163 MYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           MY RCG ++ ARKVFD + E  RD+VSWN M+S Y      K+A++L+ RM   +  PD+
Sbjct: 204 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDK 260

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           +T VS+L +C    D+ LG+ +   +V ++++ N  +G+AL+ MY KCG+   AR VFD 
Sbjct: 261 VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK 320

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-------KYAGVNPDKITLIGVLSACAS 333
           M  + +++W  +I+AY +  L  EA  LF +M           V PD +  + +L+ACA 
Sbjct: 321 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACAD 380

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS-WNA 381
           + AL+ GK V + A+  GL  D             CG I++A ++F+ +    +V  WNA
Sbjct: 381 VSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNA 440

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI+  A  G++HEAL LF RM  EG   RP+  +F+ +L AC H GL D+G+  F  M++
Sbjct: 441 MIAVYAQFGQSHEALKLFWRMEMEG--VRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT 498

Query: 442 SFGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS 500
            +  + ++ +H+ C+ DL  R G L EA +F+E++P K D +   +LL AC+  ++   +
Sbjct: 499 EYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRA 558

Query: 501 QRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + V   LL +E   +  YV  S I+A L+ W   AK+R  M E+GV K  G S I I
Sbjct: 559 KEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 615



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 214/417 (51%), Gaps = 24/417 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A   F  + + N Y++  ++     + Q    +L+   +M++ G++PD  T+     SC 
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQS-KETLRALERMRQDGVRPDAVTFITALGSCG 69

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI-RERDLVSWN 189
           +  +L  G+ +H  V    L+ D  VS++L+ MY +CG L  A++VF ++ R R+++SW+
Sbjct: 70  DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 129

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
            M   ++  G   EA+  F  M        +  +V++L +C     +  G+ +   +  +
Sbjct: 130 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALS 189

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIM 307
             +    + +A++ MYG+CGA+  AR+VFDAM    +DVV+WN M++ Y  N    +AI 
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           L+ RM+   + PDK+T + +LSAC+S   + LG+ + K      L  ++           
Sbjct: 250 LYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYA 306

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM---SKEGGAAR--P 411
            CGS  +A  VF+ M   + +SW  +ISA        EA  LF++M    K G + R  P
Sbjct: 307 KCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKP 366

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           + + F+ +L+AC     +++G ++    ++S GL       + +V+LY + G + EA
Sbjct: 367 DALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEA 422



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 210/410 (51%), Gaps = 22/410 (5%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA C     A+  FD + +R+L SW  +++ ++  G +KE +    RMR++   PD +T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
            ++ LGSCGD   L  G  +   VV ++++++  + +AL++MY KCG+L  A+RVF  M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 283 -NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             ++V++W+ M  A+A +G   EA+  F  M   G+   K  ++ +LSAC+S   +  G+
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFE--DMPVTNEVSWNAMISALAF 388
            +    +  G   ++            CG++++A KVF+  D  + + VSWN M+S    
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           N R  +A+ L++RM       RP+ VT++ +LSAC  A  V  GR L   + +   L   
Sbjct: 241 NDRGKDAIQLYQRMQ-----LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVND-ELEKN 294

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
               + +V +YA+ G  +EA    ++M E+   I    ++ A  +++    +  + Q +L
Sbjct: 295 VIVGNALVSMYAKCGSHTEARAVFDKM-EQRSIISWTTIISAYVRRRLVAEACHLFQQML 353

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           E+E + S   V      A + + +  A + AL + K VS+      +  D
Sbjct: 354 ELEKNGSSQRV-KPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSD 402


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 263/494 (53%), Gaps = 55/494 (11%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           +NF  P +  +C N++ L    S+H+ V K  L +   +   ++ +  +   L  A  +F
Sbjct: 14  ENFFVP-ILQNCKNIVELK---SIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLF 69

Query: 178 DEIRERDLVSWNSMISGYSK-------MGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
            +++E +   +N+MI  ++        + + KE + L     E    PD  T   V+ SC
Sbjct: 70  KQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSC 129

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             L    LGK V   + K     N  M +ALIDMY KC +L+ A +VFD MV +D ++WN
Sbjct: 130 SGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWN 189

Query: 291 -------------------------------AMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                                          AMI+ Y + G   +A+ +F +M+  GV P
Sbjct: 190 SIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEP 249

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D+I++I VL ACA +GAL++GKW+  Y  + GL                CG I  A ++F
Sbjct: 250 DEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLF 309

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   + +SW+ MI  LA +G+A EA+ LF+RM K      PN +TF+G+LSAC HAG 
Sbjct: 310 DQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKK--AKIEPNGITFLGLLSACAHAGF 367

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            +EG   FD MS  + + P+ EHY C+VD+  RAG LS+A D +E+MP K D  + G+LL
Sbjct: 368 WNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLL 427

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            +C+   N D++   M+ L E+E  ++GNYV+ S I+A+L  WD  ++MR L++ K + K
Sbjct: 428 SSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKK 487

Query: 549 TPGCSWIGIDDPKQ 562
           TPG S I I++  Q
Sbjct: 488 TPGSSLIDINNVVQ 501



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/437 (31%), Positives = 224/437 (51%), Gaps = 56/437 (12%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           L    + +L+ C +   ++ IH  ++   + + +FL+ +++D+    +D  YASLLF Q+
Sbjct: 13  LENFFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQV 72

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-------LKPDNFTYPFVFISCAN 131
             PN Y +N MIR  T   + Y+ ++  Y +M RL        + PD FT+PFV  SC+ 
Sbjct: 73  KEPNGYLYNAMIRAHTHN-KVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSG 131

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS- 190
           L+  N G  VH+ + K G   +  + ++LI MY +C  L  A KVFD + ERD +SWNS 
Sbjct: 132 LVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSI 191

Query: 191 ------------------------------MISGYSKMGYAKEAVELFGRMREEEFLPDE 220
                                         MISGY+++G   +A+ +F +M+     PDE
Sbjct: 192 ISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDE 251

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           I+++SVL +C  LG L +GKW+  +  +N +     + +AL++MY KCG +  A ++FD 
Sbjct: 252 ISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQ 311

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M   DV++W+ MI   A +G + EAI LF RMK A + P+ IT +G+LSACA  G  + G
Sbjct: 312 MSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEG 371

Query: 341 ----------KWVDKYASQRGLRHDIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALA 387
                       ++      G   DI    G +  AL V E MP+  +   W +++S+  
Sbjct: 372 LAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCR 431

Query: 388 FNGRAHEALLLFERMSK 404
            +     A++  E + +
Sbjct: 432 THSNLDIAIIAMEHLEE 448


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/513 (33%), Positives = 276/513 (53%), Gaps = 63/513 (12%)

Query: 103 SLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           +L+++ +M    G +PDN T   V   CA+L   + G  +H       + ++  V + L+
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---- 217
            MYA+CG +D A  VF  +  +D+VSWN+M++GYS++G  ++AV LF +M+EE+      
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331

Query: 218 -------------------------------PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
                                          P+E+TL+SVL  C  +G L+ GK +  + 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 247 VKNKMDL--------NFYMGSALIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITAY 296
           +K  +DL        N  + + LIDMY KC  +  AR +FD++  K  DVVTW  MI  Y
Sbjct: 392 IKYPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 297 AQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           +Q+G +N+A+ L + M  +     P+  T+   L ACAS+ AL +GK +  YA +     
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510

Query: 355 ----------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                     D++  CGSI DA  VF++M   NEV+W ++++    +G   EAL +F+ M
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            + G   + + VT + VL AC H+G++D+G   F+ M + FG+ P  EHY+C+VDL  RA
Sbjct: 571 RRIG--FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRA 628

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L+ A   +E MP +   +V  A L  C+     ++ +   + + E+ S++ G+Y + S
Sbjct: 629 GRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLS 688

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            ++AN   W D  ++R+LMR KGV K PGCSW+
Sbjct: 689 NLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWV 721



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 257/523 (49%), Gaps = 69/523 (13%)

Query: 30  LLKKCPSTKTVQQIHTQML---INFIQKPNFLLIRIIDLKDFNYASLLFHQI--SRPNEY 84
            + KC +   V+ IH ++L   I  +   + L+   I +   ++A  L  +   S    Y
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVY 93

Query: 85  AFNVMIR--GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            +N +IR  G      K    L L+  M  L   PDN+T+PFVF +C  + ++  G S H
Sbjct: 94  HWNSLIRSYGDNGCANK---CLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAH 150

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +     G   +  V ++L+ MY+RC  L  ARKVFDE+   D+VSWNS+I  Y+K+G  K
Sbjct: 151 ALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPK 210

Query: 203 EAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            A+E+F RM  E    PD ITLV+VL  C  LG   LGK +  F V ++M  N ++G+ L
Sbjct: 211 VALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCL 270

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-------- 313
           +DMY KCG +  A  VF  M  KDVV+WNAM+  Y+Q G   +A+ LF +M+        
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330

Query: 314 ---------YA------------------GVNPDKITLIGVLSACASIGALDLGKWVDKY 346
                    YA                  G+ P+++TLI VLS CAS+GAL  GK +  Y
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 347 ASQ-----RGLRH-----------DIF--CGSIDDALKVFEDMPVTNE--VSWNAMISAL 386
           A +     R   H           D++  C  +D A  +F+ +       V+W  MI   
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGL 445
           + +G A++AL L   M +E    RPN  T    L AC     +  G+++    + +    
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           +P     +C++D+YA+ G +S+A    + M  K +E+   +L+
Sbjct: 511 VPLFVS-NCLIDMYAKCGSISDARLVFDNMMAK-NEVTWTSLM 551



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 42/356 (11%)

Query: 27  LLSLLKKCPSTKTV---QQIHTQMLINFIQ-------KPNFLLIRIIDL----KDFNYAS 72
           L+S+L  C S   +   ++IH   +   I          N ++ ++ID+    K  + A 
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427

Query: 73  LLFHQISRPNE---YAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFVFI 127
            +F  +S P E     + VMI G +      + +L+L  +M  +    +P+ FT     +
Sbjct: 428 AMFDSLS-PKERDVVTWTVMIGGYSQHGDA-NKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
           +CA+L AL  G  +H+   +   +     VS+ LI MYA+CG +  AR VFD +  ++ V
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEV 545

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +W S+++GY   GY +EA+ +F  MR   F  D +TL+ VL +C   G  ++ + +E F 
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSG--MIDQGMEYF- 602

Query: 247 VKNKMDLNFYMG------SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQN 299
             N+M   F +       + L+D+ G+ G L  A R+ + M +    V W A ++    +
Sbjct: 603 --NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIH 660

Query: 300 GLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           G          ++     N D   TL+  L A A       G+W D    +  +RH
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANA-------GRWKDVTRIRSLMRH 709


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 294/549 (53%), Gaps = 24/549 (4%)

Query: 27  LLSLLKKCPSTKTVQQIH-TQMLINF---IQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LSLL        VQ +H + +L  F   I   N +L      ++  Y+  LF  + + +
Sbjct: 173 MLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRD 232

Query: 83  EYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             ++N     L +A+ +  +    L L   M+  G +PD  T+  V    A+   L  G 
Sbjct: 233 LVSWN----SLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGR 288

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H  + +   D D HV  SLI MY + G +D A ++F+   ++D+V W +MISG  + G
Sbjct: 289 CLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNG 348

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
            A +A+ +F +M +        T+ SV+ +C  LG   LG  V G++ ++++ ++    +
Sbjct: 349 SADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQN 408

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +L+ M+ KCG L  +  VFD M  +++V+WNAMIT YAQNG   +A+ LFN M+     P
Sbjct: 409 SLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTP 468

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D IT++ +L  CAS G L LGKW+  +  + GLR  I            CG +D A + F
Sbjct: 469 DSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCF 528

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             MP  + VSW+A+I    ++G+   AL  + +  + G   +PN V F+ VLS+C H GL
Sbjct: 529 NQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESG--MKPNHVIFLSVLSSCSHNGL 586

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V++G  +++ M+  FG+ P  EH++C+VDL +RAG + EA++  ++        VLG +L
Sbjct: 587 VEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIIL 646

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+   N ++   +   +L ++  ++GN+V  +  +A++  W++  +    MR  G+ K
Sbjct: 647 DACRANGNNELGDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKK 706

Query: 549 TPGCSWIGI 557
            PG S+I I
Sbjct: 707 IPGWSFIDI 715



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 226/448 (50%), Gaps = 32/448 (7%)

Query: 48  LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLY 107
           + ++  KPN LL R   LK +   SL     +     +FN +I    ++   +   L  Y
Sbjct: 1   MFSYKPKPNLLLSRS-GLKRY-VVSLPHPSSASATINSFNAIINH-HSSQGAHRQVLATY 57

Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
             M +  +  D +T+P +  +C++L   + G+S+H  +   GL  D +++ SLI  YA+ 
Sbjct: 58  ASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKF 117

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G  D ARKVFD + ER++V W S+I  YS+ G   EA  LF  MR +   P  +T++S+L
Sbjct: 118 GFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLL 177

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
               +L  +   + + G  +      +  + ++++ MYGKC  +  +R++FD M  +D+V
Sbjct: 178 FGVSELAHV---QCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLV 234

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----- 342
           +WN++++AYAQ G   E ++L   M+  G  PD  T   VLS  AS G L LG+      
Sbjct: 235 SWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQI 294

Query: 343 ------VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
                 +D +     +   +  G+ID A ++FE     + V W AMIS L  NG A +AL
Sbjct: 295 LRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKAL 354

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE------ 450
            +F +M K G   + +  T   V++AC   G        ++L +S  G + + E      
Sbjct: 355 AVFRQMLKFG--VKSSTATMASVITACAQLG-------SYNLGTSVHGYMFRHELPMDIA 405

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + +V ++A+ GHL ++    ++M ++
Sbjct: 406 TQNSLVTMHAKCGHLDQSSIVFDKMNKR 433


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 260/456 (57%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           +  D   Y  +   C     L  G  VH+ + +     D  + ++L+ MYA+CG L+ AR
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           KVF+++ +RD V+W ++ISGYS+     +A+  F +M    + P+E TL SV+ +     
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
               G  + GF VK   D N ++GSAL+D+Y + G +  A+ VFDA+ +++ V+WNA+I 
Sbjct: 176 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 235

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+   + +A+ LF  M   G  P   +   +  AC+S G L+ GKWV  Y  + G + 
Sbjct: 236 GHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295

Query: 355 DIFCG-----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             F G           SI DA K+F+ +   + VSWN++++A A +G   EA+  FE M 
Sbjct: 296 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMR 355

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G   RPN+++F+ VL+AC H+GL+DEG   ++LM    G++P++ HY  +VDL  RAG
Sbjct: 356 RVG--IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAG 412

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L+ A  F+E MP +    +  ALL AC+  KNT++     + + E++  + G +VI   
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN 472

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+   W+D+A++R  M+E GV K P CSW+ I++
Sbjct: 473 IYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 508



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 196/376 (52%), Gaps = 20/376 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
           +LLKKC   K + Q   +H  +L +  +      N LL           A  +F ++ + 
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +  +I G +    +   +L  + QM R G  P+ FT   V  + A       G  +
Sbjct: 125 DFVTWTTLISGYSQH-DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G D + HV  +L+ +Y R G +D A+ VFD +  R+ VSWN++I+G+++    
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++A+ELF  M  + F P   +  S+ G+C   G L  GKWV  +++K+   L  + G+ L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K G++  AR++FD +  +DVV+WN+++TAYAQ+G   EA+  F  M+  G+ P++
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           I+ + VL+AC+  G LD G    +   + G+  + +            G ++ AL+  E+
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 371 MPVTNEVS-WNAMISA 385
           MP+    + W A+++A
Sbjct: 424 MPIEPTAAIWKALLNA 439


>gi|356518950|ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Glycine max]
          Length = 551

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 276/537 (51%), Gaps = 19/537 (3%)

Query: 34  CPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVM 89
           C S    +Q+H  +L   + +  F   +I+ L     D N A  LF +    + Y +N M
Sbjct: 16  CKSLLRAKQLHAFLLKTHLSQDPFYATKIVRLYAANNDINSAHHLFDKTPNRSVYLWNSM 75

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           IR    + Q++ +++ L+  M    + PD  TY  V  +CAN         VH      G
Sbjct: 76  IRAFAQS-QRFFNAISLFRTMLGADISPDGHTYACVIRACANNFDFGMLRRVHGGAVAAG 134

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           L  D     +L+  Y++ G +  AR+VFD I E DLV WNS+ISGY   G     +++F 
Sbjct: 135 LGRDPVCCSALVAAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFS 194

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
            MR     PD  TL  +L    D G L +G+ +     K+ +D + ++GS L+ MY +C 
Sbjct: 195 MMRLFGMKPDGYTLAGLLVGIADSGMLSIGQGLHCLSQKSGLDSDSHVGSLLLSMYSRCK 254

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            +  A RVF +++N D+VTW+A+I  Y+Q+G   + ++ F ++      PD + +  VL+
Sbjct: 255 HMASAYRVFCSILNPDLVTWSALIVGYSQSGEYEKVLLFFRKLNMESKKPDSVLIASVLA 314

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           + A +  + LG  V  YA + GL  D+            CG +   + VF  MP  N VS
Sbjct: 315 SIAQMANVGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLGICVFRVMPERNIVS 374

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           +N++I     +G A EA  +F++M ++G    P++ TF  +L AC HAGLV +GR +F  
Sbjct: 375 FNSVILGFGLHGCASEAFRMFDKMLEKG--LVPDEATFSSLLCACCHAGLVKDGREIFQR 432

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M   F +  + EHY  MV L   AG L EA++  + +PE VD+ +LGALL  C    N++
Sbjct: 433 MKHEFNIRARPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNICGNSE 492

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           +++ V   L E   +++   V+ S I+A    WDD  K+R  M   G  K PG SWI
Sbjct: 493 LAETVAHQLFESSPADNVYRVMLSNIYAGDGRWDDVKKLRDNM-TGGPRKMPGLSWI 548


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/464 (37%), Positives = 258/464 (55%), Gaps = 15/464 (3%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           +K    M R  L  D  TY  +   C    A+     VH  VF  G +    + ++LI M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y + G LD AR +FDE+ +R++VSW +MIS YS      +A++    M  E   P+  T 
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
            SVL +C  L +L   + + G ++K  ++ + ++ SALID Y K G    A  VF+ M+ 
Sbjct: 121 SSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMIT 177

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
            D+V WN++I  +AQN   +E + L+ RMK A    D+ TL  VL AC  +  L+LG+ V
Sbjct: 178 GDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQV 237

Query: 344 D----KYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEV-SWNAMISALAFNGRAH 393
                KY     L + +      CGS++DA  +F  M    +V SW+ MI+ LA NG + 
Sbjct: 238 HVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSA 297

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           +AL LFE M  +G   +PN +T +GVL AC HAGLV++G   F  M   FG+ P  EHY 
Sbjct: 298 DALKLFEAMKSKG--PKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYG 355

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           C++DL  RAG L EA   +  M  + D +    LLGAC+  KN D++    + +L+++ +
Sbjct: 356 CIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPA 415

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++G Y++ S I+AN + W+D A++R  MR +GV K PGCSWI +
Sbjct: 416 DAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEV 459



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 24/281 (8%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNV 88
           S+L+ C     ++Q+H  +L   ++   F+   +ID       S L  Q    N   FN 
Sbjct: 122 SVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDT-----YSKLGEQHDALN--VFNE 174

Query: 89  MIRGLTTAWQKY----------SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
           MI G    W               +L LY +MKR     D  T   V  +C  L  L  G
Sbjct: 175 MITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELG 234

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE-IRERDLVSWNSMISGYSK 197
             VH  V K   D+D  ++++L+ MY +CG L+ A  +F   + E+D++SW++MI+G ++
Sbjct: 235 RQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQ 292

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK--MDLNF 255
            G++ +A++LF  M+ +   P+ IT++ VL +C   G LV   W     +K    +D   
Sbjct: 293 NGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAG-LVNDGWYYFQSMKEHFGIDPGR 351

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITA 295
                +ID+ G+ G L  A ++   M ++ D VTW  ++ A
Sbjct: 352 EHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGA 392


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 260/456 (57%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           +  D   Y  +   C     L  G  VH+ + +     D  + ++L+ MYA+CG L+ AR
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           KVF+++ +RD V+W ++ISGYS+     +A+  F +M    + P+E TL SV+ +     
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
               G  + GF VK   D N ++GSAL+D+Y + G +  A+ VFDA+ +++ V+WNA+I 
Sbjct: 176 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 235

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+   + +A+ LF  M   G  P   +   +  AC+S G L+ GKWV  Y  + G + 
Sbjct: 236 GHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295

Query: 355 DIFCG-----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             F G           SI DA K+F+ +   + VSWN++++A A +G   EA+  FE M 
Sbjct: 296 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMR 355

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G   RPN+++F+ VL+AC H+GL+DEG   ++LM    G++P++ HY  +VDL  RAG
Sbjct: 356 RVG--IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAG 412

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L+ A  F+E MP +    +  ALL AC+  KNT++     + + E++  + G +VI   
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN 472

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+   W+D+A++R  M+E GV K P CSW+ I++
Sbjct: 473 IYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 508



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 196/376 (52%), Gaps = 20/376 (5%)

Query: 29  SLLKKCPSTKTVQQ---IHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
           +LLKKC   K + Q   +H  +L +  +      N LL           A  +F ++ + 
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +   +  +I G +    +   +L  + QM R G  P+ FT   V  + A       G  +
Sbjct: 125 DFVTWTTLISGYSQH-DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G D + HV  +L+ +Y R G +D A+ VFD +  R+ VSWN++I+G+++    
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++A+ELF  M  + F P   +  S+ G+C   G L  GKWV  +++K+   L  + G+ L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY K G++  AR++FD +  +DVV+WN+++TAYAQ+G   EA+  F  M+  G+ P++
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           I+ + VL+AC+  G LD G    +   + G+  + +            G ++ AL+  E+
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 371 MPVTNEVS-WNAMISA 385
           MP+    + W A+++A
Sbjct: 424 MPIEPTAAIWKALLNA 439


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 267/488 (54%), Gaps = 15/488 (3%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH-GV 139
           P   ++   I G     +    +L  +  M RLGL+P++FT+P  F + A+    +  G 
Sbjct: 80  PTVVSYTAFISGAAQHGRPLP-ALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGP 138

Query: 140 SVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            +HS   + G L  D  VS + + MY + G+L  AR +F E+  R++V+WN++++     
Sbjct: 139 QIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLD 198

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G   E +E +  +RE   LP+ ++  +   +C     L LG+   GFVVK   +++  + 
Sbjct: 199 GRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVL 258

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++++D YGKC     AR VFD M  ++ V+W +M+ AYAQNG   EA   +   + +G  
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEE 318

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P    +   L+ CA +  L LG+ +   A +  +  +IF           CG ++DA ++
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F + P  N V+WNAMI   A  G A  ALL+F+ M + G  A PN +T + V+++C   G
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETA-PNYITLVNVITSCSRGG 437

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           L  +G  LF+ M   FG+ P++EHY+C+VDL  RAG   +A++ ++ MP +    V GAL
Sbjct: 438 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 497

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LGAC+    T++ +   + L E++  +SGN+V+ S +FA+   W ++  +R  M+  G+ 
Sbjct: 498 LGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 548 KTPGCSWI 555
           K PGCSW+
Sbjct: 558 KDPGCSWV 565



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 189/388 (48%), Gaps = 22/388 (5%)

Query: 35  PSTKTVQQIHTQMLINFIQKP--NFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNV 88
           P +    QIH+ + I F   P   F+    +D+         A  LF ++   N  A+N 
Sbjct: 132 PRSTIGPQIHS-LAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNA 190

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           ++       +    +++ Y+ ++  G  P+  +    F +CA  + L+ G   H  V K 
Sbjct: 191 VMTNAVLDGRPL-ETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKC 249

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G + D  V +S++  Y +C     AR VFD +  R+ VSW SM++ Y++ G  +EA   +
Sbjct: 250 GFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY 309

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
              R     P +  + S L +C  L  L LG+ +    V++ +D N ++ SAL+DMYGKC
Sbjct: 310 LGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKC 369

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGV 327
           G +  A ++F     +++VTWNAMI  YA  G +  A+++F+ M  +G   P+ ITL+ V
Sbjct: 370 GCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNV 429

Query: 328 LSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTN 375
           +++C+  G    G  +     +++  +    H     D+    G  + A +V + MP+  
Sbjct: 430 ITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRP 489

Query: 376 EVS-WNAMISALAFNGRAHEALLLFERM 402
            +S W A++ A   +G+     +  E++
Sbjct: 490 SISVWGALLGACKMHGKTELGRIAAEKL 517



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 16/222 (7%)

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           L+ ++ + L+++Y K      A     +  +  VV++ A I+  AQ+G    A+  F  M
Sbjct: 49  LSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGM 108

Query: 313 KYAGVNPDKITLIGVLSACAS------IG------ALDLGKW-VDKYASQRGLRHDIFCG 359
              G+ P+  T      A AS      IG      A+  G   VD + S   L      G
Sbjct: 109 LRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTG 168

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +  A  +F +MP  N V+WNA+++    +GR  E +  +  + + GG   PN V+    
Sbjct: 169 RLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGL--PNVVSACAF 226

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
            +AC  A  +  G +    +    G        + MVD Y +
Sbjct: 227 FNACAGAMYLSLGEQFHGFVVKC-GFEMDVSVLNSMVDFYGK 267


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/471 (35%), Positives = 270/471 (57%), Gaps = 20/471 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +++L+ +M   GL+PD+     +     N   ++ G + H+ + K    ++  V ++LI+
Sbjct: 304 AMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALIS 363

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR---EEEFLPD 219
           MY +   +D+A +VF  + +RD  SWN MI GY K G   + +EL+  M+     EFL D
Sbjct: 364 MYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCD 423

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             +LVS + SC  L +L LG+    + +K+ +D +  + + LI MYG+CG    A ++F 
Sbjct: 424 ANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFG 483

Query: 280 -AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
            A +  DVVTWN +I++YA  G SN A+ L+++M   G+ P+  TLI V+SACA++ AL+
Sbjct: 484 LAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALE 543

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+ +  Y  + G  +D+            CG +  A ++F+ M   + V+WN MIS   
Sbjct: 544 RGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYG 603

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G A +AL LF +M  EGG+ +PN VTF+ +LSAC H+GL++EGR+LF  M   + L P
Sbjct: 604 MHGEAKQALELFGKM--EGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGK-YSLEP 660

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             +HY+CMVDL  ++GHL EA D V  MP + D  + G LL AC+   + ++  R+ +  
Sbjct: 661 NLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKA 720

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
              ++ N G Y++ S  + + K WD+  K+R  M+  GV K  G  W  +D
Sbjct: 721 FASDAENEGYYILISNSYGSAKKWDEIEKLREAMKNHGVQK--GAGWSAVD 769



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 182/337 (54%), Gaps = 29/337 (8%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV----- 125
           A  +F  + + +  ++N+MI G   A       L+LY +M+         TY F+     
Sbjct: 374 AGRVFRLLHQRDADSWNLMIVGYCKAGCDVK-CLELYREMQF------RDTYEFLCDANS 426

Query: 126 ----FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
                 SC+ L+ L  G S H    K  LDED  V++ LI MY RCGK D A K+F   +
Sbjct: 427 LVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK 486

Query: 182 ER-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
            + D+V+WN++IS Y+ +G++  AV L+ +M  E   P+  TL++V+ +C +L  L  G+
Sbjct: 487 LKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGE 546

Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            +  +V +   D +  + +ALIDMY KCG L  ARR+FD+M+  DVV WN MI+ Y  +G
Sbjct: 547 KIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHG 606

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV----DKYASQRGLRH-- 354
            + +A+ LF +M+   + P+ +T + +LSAC   G L+ G+ +     KY+ +  L+H  
Sbjct: 607 EAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHYA 666

Query: 355 ---DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISA 385
              D+    G + +A  +   MPV  +   W  ++SA
Sbjct: 667 CMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSA 703



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 205/421 (48%), Gaps = 23/421 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG----LKPDNFTYPFVFISC 129
           LF ++   +  A+  ++ G     +     L+   +M RL      +P++ T      +C
Sbjct: 171 LFEEMRERDVVAWTAVVSGCVRNGE-CGDGLRYLVEMVRLAGDGKARPNSRTMESGLEAC 229

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
             L  LN G  +H    K+G+ +   V  +L +MY++C   + A  +F E+ E+D+VSW 
Sbjct: 230 GVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWT 289

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           S+I  Y   G  +EA+ELF  M E    PD++ +  +L   G+ G++  GK     ++K 
Sbjct: 290 SLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKR 349

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               N  +G+ALI MYGK   +  A RVF  +  +D  +WN MI  Y + G   + + L+
Sbjct: 350 NFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELY 409

Query: 310 NRMKYAGVNP---DKITLIGVLSACASIGALDLGK---------WVDKYASQRGLRHDIF 357
             M++        D  +L+  +S+C+ +  L LG+         W+D+ +S   +   ++
Sbjct: 410 REMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMY 469

Query: 358 --CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
             CG  D A K+F    +  + V+WN +IS+ A  G ++ A+ L+++M  EG    PN  
Sbjct: 470 GRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEG--LTPNST 527

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T I V+SAC +   ++ G ++   +    G        + ++D+YA+ G L  A    + 
Sbjct: 528 TLITVISACANLVALERGEKIHSYV-KEMGWDYDVSINTALIDMYAKCGQLGTARRIFDS 586

Query: 475 M 475
           M
Sbjct: 587 M 587



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 142/500 (28%), Positives = 221/500 (44%), Gaps = 31/500 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+L F    RP+ + +N +IR    A   +  +L  + +M     +P  FT P    + A
Sbjct: 63  AALAFSACPRPDAFLWNSLIRTHHCA-SDFVAALNAHRRMLASSARPSPFTVPLAASAAA 121

Query: 131 NLLALNHGVSVHSSVFKIGLDEDD----HVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            L AL  G SVH+   + GL   D     V  SL+ MYARCG +  A K+F+E+RERD+V
Sbjct: 122 ELGALGVGASVHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVV 181

Query: 187 SWNSMISGYSKMG-------YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           +W +++SG  + G       Y  E V L G  +     P+  T+ S L +CG L +L  G
Sbjct: 182 AWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKAR---PNSRTMESGLEACGVLDELNSG 238

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           + + G+ VK  +  +  + SAL  MY KC +   A  +F  +  KDVV+W ++I  Y   
Sbjct: 239 RCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWR 298

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359
           GL  EA+ LF  M  +G+ PD + +  +LS   + G +  GK       +R    ++  G
Sbjct: 299 GLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVG 358

Query: 360 S-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
           +           +D+A +VF  +   +  SWN MI      G   + L L+  M      
Sbjct: 359 NALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTY 418

Query: 409 ARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
               D  + +  +S+C     +  GR      S    L   S   + ++ +Y R G    
Sbjct: 419 EFLCDANSLVSAISSCSRLVELRLGRSAH-CYSIKHWLDEDSSVANVLIGMYGRCGKFDH 477

Query: 468 AWDFVERMPEKVDEIVLGALLG--ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
           A         K D +    L+   A     NT VS    Q+L E  + NS   +      
Sbjct: 478 ACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSL-YDQMLTEGLTPNSTTLITVISAC 536

Query: 526 ANLKMWDDSAKMRALMREKG 545
           ANL   +   K+ + ++E G
Sbjct: 537 ANLVALERGEKIHSYVKEMG 556


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 267/488 (54%), Gaps = 15/488 (3%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH-GV 139
           P   ++   I G     +    +L  +  M RLGL+P++FT+P  F + A+    +  G 
Sbjct: 80  PTVVSYTAFISGAAQHGRPLP-ALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGP 138

Query: 140 SVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
            +HS   + G L  D  VS + + MY + G+L  AR +F E+  R++V+WN++++     
Sbjct: 139 QIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLD 198

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G   E +E +  +RE   LP+ ++  +   +C     L LG+   GFVVK   +++  + 
Sbjct: 199 GRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVL 258

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++++D YGKC     AR VFD M  ++ V+W +M+ AYAQNG   EA   +   + +G  
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEE 318

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P    +   L+ CA +  L LG+ +   A +  +  +IF           CG ++DA ++
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F + P  N V+WNAMI   A  G A  ALL+F+ M + G  A PN +T + V+++C   G
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETA-PNYITLVNVITSCSRGG 437

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           L  +G  LF+ M   FG+ P++EHY+C+VDL  RAG   +A++ ++ MP +    V GAL
Sbjct: 438 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 497

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LGAC+    T++ +   + L E++  +SGN+V+ S +FA+   W ++  +R  M+  G+ 
Sbjct: 498 LGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 548 KTPGCSWI 555
           K PGCSW+
Sbjct: 558 KDPGCSWV 565



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 189/388 (48%), Gaps = 22/388 (5%)

Query: 35  PSTKTVQQIHTQMLINFIQKP--NFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNV 88
           P +    QIH+ + I F   P   F+    +D+         A  LF ++   N  A+N 
Sbjct: 132 PRSTIGPQIHS-LAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNA 190

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           ++       +    +++ Y+ ++  G  P+  +    F +CA  + L+ G   H  V K 
Sbjct: 191 VMTNAVLDGRPL-ETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKC 249

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G + D  V +S++  Y +C     AR VFD +  R+ VSW SM++ Y++ G  +EA   +
Sbjct: 250 GFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY 309

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
              R     P +  + S L +C  L  L LG+ +    V++ +D N ++ SAL+DMYGKC
Sbjct: 310 LGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKC 369

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGV 327
           G +  A ++F     +++VTWNAMI  YA  G +  A+++F+ M  +G   P+ ITL+ V
Sbjct: 370 GCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNV 429

Query: 328 LSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTN 375
           +++C+  G    G  +     +++  +    H     D+    G  + A +V + MP+  
Sbjct: 430 ITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRP 489

Query: 376 EVS-WNAMISALAFNGRAHEALLLFERM 402
            +S W A++ A   +G+     +  E++
Sbjct: 490 SISVWGALLGACKMHGKTELGRIAAEKL 517



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 16/222 (7%)

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           L+ ++ + L+++Y K      A     +  +  VV++ A I+  AQ+G    A+  F  M
Sbjct: 49  LSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGM 108

Query: 313 KYAGVNPDKITLIGVLSACAS------IG------ALDLGKW-VDKYASQRGLRHDIFCG 359
              G+ P+  T      A AS      IG      A+  G   VD + S   L      G
Sbjct: 109 LRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTG 168

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +  A  +F +MP  N V+WNA+++    +GR  E +  +  + + GG   PN V+    
Sbjct: 169 RLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGL--PNVVSACAF 226

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
            +AC  A  +  G +    +    G        + MVD Y +
Sbjct: 227 FNACAGAMYLSLGEQFHGFVVKC-GFEMDVSVLNSMVDFYGK 267


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 283/547 (51%), Gaps = 21/547 (3%)

Query: 29  SLLKKCPST---KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+ + C +     T +Q+H   + N       +   I+D+         A   F  +   
Sbjct: 242 SVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNH 301

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
              A N M+ GL       + +L+L+  M R G+  D  +   VF +CA +     G+ V
Sbjct: 302 TVQACNAMMVGLVRTGLG-AEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQV 360

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G D D  V ++++ +Y +C  L  A  VF E+ +RD VSWN++I+   +    
Sbjct: 361 HCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECY 420

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           ++ +     M      PD+ T  SVL +C  L  L  G  V G  +K+ + L+ ++ S +
Sbjct: 421 EDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTV 480

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG +  A+++ D +  +++V+WN++I+ ++ N  S EA   F+ M   GV PD 
Sbjct: 481 VDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDH 540

Query: 322 ITLIGVLSACASIGALDLGKWV-----------DKYASQRGLRHDIFCGSIDDALKVFED 370
            T   VL  CA++  ++LGK +           D+Y S   +     CG++ D+L +FE 
Sbjct: 541 FTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK 600

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
               + VSWNAMI   A +G+  EAL +FERM +      PN  TF+ VL AC H GL+D
Sbjct: 601 AQKLDFVSWNAMICGYALHGQGFEALEMFERMQQAN--VVPNHATFVAVLRACSHVGLLD 658

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           +G R F LM+S + L P+ EH++CMVD+  R+    EA  F+  MP + D ++   LL  
Sbjct: 659 DGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSI 718

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+ +++ +V++     +L ++  +S  Y++ S ++A    W D ++ R LMR+  + K P
Sbjct: 719 CKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEP 778

Query: 551 GCSWIGI 557
           GCSWI +
Sbjct: 779 GCSWIEV 785



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 138/489 (28%), Positives = 229/489 (46%), Gaps = 35/489 (7%)

Query: 24  REKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           R  L  LLK C   + +    QIH   +   ++        ++D+    +    A   FH
Sbjct: 136 RTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFH 195

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            +   N  ++   I G     ++Y+  L+L+ QM+RLGL      Y  VF SCA +  L+
Sbjct: 196 GMGERNSVSWGAAIAGCVQN-EQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLS 254

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
               +H+   K     D  V  +++ +YA+   L  AR+ F  +    + + N+M+ G  
Sbjct: 255 TARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLV 314

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G   EA++LF  M       D ++L  V  +C ++   + G  V    +K+  D++  
Sbjct: 315 RTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVC 374

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +A++D+YGKC ALV A  VF  M  +D V+WNA+I A  QN    + I   N M   G
Sbjct: 375 VRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYG 434

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           + PD  T   VL ACA + +L+ G  V   A + GL  D F           CG I +A 
Sbjct: 435 MEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQ 494

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
           K+ + +     VSWN++IS  + N ++ EA   F  M   G   +P+  T+  VL  C +
Sbjct: 495 KLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIG--VKPDHFTYATVLDTCAN 552

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHY------SCMVDLYARAGHLSEAWDFVERMPEKV 479
              ++ G+++        G I K E        S +VD+YA+ G++ ++    E+  +K+
Sbjct: 553 LATIELGKQI-------HGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK-AQKL 604

Query: 480 DEIVLGALL 488
           D +   A++
Sbjct: 605 DFVSWNAMI 613



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 227/506 (44%), Gaps = 38/506 (7%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           LL +  +C      + +   M        N +L       D   A+ LF  +  P+  ++
Sbjct: 45  LLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSW 104

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N ++ G       +  S+ L  +M R G+ PD  T   +  +C  L  L  GV +H+   
Sbjct: 105 NALLSGYCQRGM-FRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAV 163

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           K GL+ D     +L+ MY +C  L+ A + F  + ER+ VSW + I+G  +       +E
Sbjct: 164 KTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLE 223

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           LF +M+       +    SV  SC  +  L   + +    +KNK   +  +G+A++D+Y 
Sbjct: 224 LFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYA 283

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           K  +LV ARR F ++ N  V   NAM+    + GL  EA+ LF  M  +G+  D ++L G
Sbjct: 284 KADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSG 343

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
           V SACA +     G  V   A + G   D+            C ++ +A  VF++M   +
Sbjct: 344 VFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRD 403

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-----------V 424
            VSWNA+I+AL  N    + +     M + G    P+D T+  VL AC           V
Sbjct: 404 SVSWNAIIAALEQNECYEDTIAYLNEMLRYG--MEPDDFTYGSVLKACAGLQSLEYGSVV 461

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H   +  G  L   +SS+            +VD+Y + G ++EA    +R+  + + +  
Sbjct: 462 HGKAIKSGLGLDAFVSST------------VVDMYCKCGMITEAQKLHDRIGGQ-ELVSW 508

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEI 510
            +++      K ++ +Q+    +L+I
Sbjct: 509 NSIISGFSLNKQSEEAQKFFSEMLDI 534



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 186/419 (44%), Gaps = 46/419 (10%)

Query: 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
            F++ +   + A   AL  G + H+ +   G      VS+ L+ MYARCG    AR VFD
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL--------------------- 217
            +  RD VSWN+M++ Y+  G    A  LFG M + + +                     
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 218 ----------PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
                     PD  TL  +L +CG L DL LG  +    VK  ++++   GSAL+DMYGK
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           C +L  A R F  M  ++ V+W A I    QN      + LF +M+  G+   +     V
Sbjct: 184 CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASV 243

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIFCG-----------SIDDALKVFEDMPVTNE 376
             +CA+I  L   + +  +A +     D   G           S+ DA + F  +P    
Sbjct: 244 FRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTV 303

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
            + NAM+  L   G   EAL LF+ M++ G     + V+  GV SAC       +G ++ 
Sbjct: 304 QACNAMMVGLVRTGLGAEALQLFQFMTRSGIGF--DVVSLSGVFSACAEVKGYLQGLQVH 361

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
            L   S G        + ++DLY +   L EA+   + M E+ D +   A++ A ++ +
Sbjct: 362 CLAIKS-GFDVDVCVRNAILDLYGKCKALVEAYLVFQEM-EQRDSVSWNAIIAALEQNE 418


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 180/573 (31%), Positives = 294/573 (51%), Gaps = 53/573 (9%)

Query: 3   LRAKAYSRHLAFTELNDPSLLREKLL--SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI 60
            +++  S  L   EL+  S      L   +L   P  +T++ +H+++++  ++  + L +
Sbjct: 19  FQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGV 78

Query: 61  RII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           +++     LKD   A  +F +I   N    NVMIR        Y   +K++  M    ++
Sbjct: 79  KLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF-YGEGVKVFGTMCGCNVR 137

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           PD++T+P V  +C+    +  G  +H S  K+GL     V + L++MY +CG L  AR V
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
            DE+  RD+VSWNS++ GY++     +A+E+   M   +   D  T+ S+L +       
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA------- 250

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
                V     +N M +         DM+ K G              K +V+WN MI  Y
Sbjct: 251 -----VSNTTTENVMYVK--------DMFFKMG-------------KKSLVSWNVMIGVY 284

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            +N +  EA+ L++RM+  G  PD +++  VL AC    AL LGK +  Y  ++ L  ++
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                       CG ++ A  VFE+M   + VSW AMISA  F+GR  +A+ LF ++   
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G    P+ + F+  L+AC HAGL++EGR  F LM+  + + P+ EH +CMVDL  RAG +
Sbjct: 405 GLV--PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA+ F++ M  + +E V GALLGAC+   +TD+       L ++    SG YV+ S I+
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           A    W++   +R +M+ KG+ K PG S + ++
Sbjct: 523 AKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 269/505 (53%), Gaps = 34/505 (6%)

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MI  L     + + ++++ Y M  LG++PD  T+     +C+ L  L  G  +H+ V
Sbjct: 250 WNTMI-SLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV 308

Query: 146 FK-IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAK 202
            K   L  +  V+ +L+ MYA   K+ SAR+VFD + E  R L  WN+MI GY++ G  +
Sbjct: 309 LKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDE 368

Query: 203 EAVELFGRMREEE-FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           EA+ELF RM  E    P E T+  VL +C         + + G+VVK  M  N ++ +AL
Sbjct: 369 EALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNAL 428

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN--- 318
           +DMY + G +  ARR+F  +  +DVV+WN +IT     G + EA  L   M+    +   
Sbjct: 429 MDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSS 488

Query: 319 -------------PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
                        P+ ITL+ +L  CA++ A   GK +  YA +  L  DI         
Sbjct: 489 SSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDM 548

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG +  +  VF+ +P  N ++WN +I A   +G   EA+ LF+ M+  GG A PN+V
Sbjct: 549 YAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAA-GGEATPNEV 607

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TFI  L+AC H+GLVD G  LF  M    G+ P  + ++C+VD+  RAG L EA+  +  
Sbjct: 608 TFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITS 667

Query: 475 M-PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
           M P +       +LLGAC+  +N ++ +   + L E+E   + +YV+   I++   MWD 
Sbjct: 668 MEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDK 727

Query: 534 SAKMRALMREKGVSKTPGCSWIGID 558
           S  +R  MR +GV+K PGCSWI +D
Sbjct: 728 SVAVRVRMRRQGVAKEPGCSWIELD 752



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 25/309 (8%)

Query: 56  NFLLIRIIDLKDFN----YASLLFHQISRPNEY--AFNVMIRGLTTAWQKYSHSLKLYYQ 109
           +F+   ++D+   N     A  +F  +  P+     +N MI G   A      +L+L+ +
Sbjct: 318 SFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMD-EEALELFSR 376

Query: 110 MK-RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           M+   G  P   T   V  +CA         ++H  V K G+  +  V ++L+ MYAR G
Sbjct: 377 MEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLG 436

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR------------EE-- 214
           ++D AR++F  I  RD+VSWN++I+G    G+A EA +L   M+            EE  
Sbjct: 437 EMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGE 496

Query: 215 --EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
               +P+ ITL+++L  C  L     GK + G+ V++ ++ +  +GSAL+DMY KCG L 
Sbjct: 497 AHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLA 556

Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSAC 331
            +R VFD +  ++V+TWN +I AY  +GL +EA+ LF+ M   G   P+++T I  L+AC
Sbjct: 557 ASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAAC 616

Query: 332 ASIGALDLG 340
           +  G +D G
Sbjct: 617 SHSGLVDRG 625



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 183/426 (42%), Gaps = 39/426 (9%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGL--DEDDHVSHSLITMYARCGKLDSARK 175
           D+F  P    S A L       S+H++  +  L       V ++L+T YARCG LD+A  
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 176 VFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGD 232
           +F       RD VS+NS+IS        + A++    M  E        TLVSVL +C  
Sbjct: 122 LFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSH 181

Query: 233 L-GD--LVLGKWVEGFVVKNKM---DLNFYMGSALIDMYGKCGALVPARRVFDAMV---- 282
           L GD    LG+    F +K          +  +AL+ MY + G +  A+ +F        
Sbjct: 182 LPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFS 241

Query: 283 --NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
               DVVTWN MI+   Q G   EA+ +   M   GV PD +T    L AC+ +  L LG
Sbjct: 242 PGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALG 301

Query: 341 KWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEV--SWNAMISAL 386
           + +     +   L  + F  S           +  A +VF+ +P  +     WNAMI   
Sbjct: 302 REMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGY 361

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGL 445
           A  G   EAL LF RM  E G A P++ T  GVL AC  + G    G+          G+
Sbjct: 362 AQAGMDEEALELFSRMEAEAGCA-PSETTMSGVLPACARSEGFA--GKEAMHGYVVKRGM 418

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
                  + ++D+YAR G +  A      M +  D +    L+  C  Q +   +    Q
Sbjct: 419 AGNRFVQNALMDMYARLGEMDVARRIFA-MIDPRDVVSWNTLITGCVVQGH---AAEAFQ 474

Query: 506 LLLEIE 511
           L+ E++
Sbjct: 475 LVTEMQ 480


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 182/587 (31%), Positives = 303/587 (51%), Gaps = 46/587 (7%)

Query: 12   LAFTELNDPSLLREKLLSLLKKCP----STKTVQQIHTQMLIN---FIQKPNFLLIRIID 64
            L  +E  DP+     L+S+   C       +  +Q+H   L N        N L+     
Sbjct: 423  LMLSENVDPTSF--TLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYAR 480

Query: 65   LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
            L   N A  LF      +  ++N +I  L+    ++  +L   Y M   G++PD  T   
Sbjct: 481  LGRVNDAKALFGVFDGKDLVSWNTVISSLSQN-DRFEEALMYVYLMIVDGVRPDGVTLAS 539

Query: 125  VFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            V  +C+ L  L  G  +H    + G L E+  V  +L+ MY  C +    R VFD +  R
Sbjct: 540  VLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRR 599

Query: 184  DLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
             +  WN++++GY++  +  +A+ LF  M  E EF P+  T  SVL +C         + +
Sbjct: 600  TVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGI 659

Query: 243  EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             G++VK     + Y+ +AL+DMY + G +  ++ +F  M  +D+V+WN MIT     G  
Sbjct: 660  HGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRY 719

Query: 303  NEAIMLFNRMKY----------------AGV--NPDKITLIGVLSACASIGALDLGKWVD 344
            ++A+ L + M+                  GV   P+ +TL+ VL  CA++ AL  GK + 
Sbjct: 720  DDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIH 779

Query: 345  KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
             YA ++ L  D+            CG ++ A +VF+ MP+ N ++WN +I A   +G+  
Sbjct: 780  AYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGE 839

Query: 394  EALLLFERMSKEGGA----ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
            EAL LF  M+  GG+     RPN+VT+I + +AC H+G+VDEG  LF  M +S G+ P+ 
Sbjct: 840  EALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRG 899

Query: 450  EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLL 508
            +HY+C+VDL  R+G + EA++ +  MP  ++++    +LLGAC+  ++ +  +   + L 
Sbjct: 900  DHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLF 959

Query: 509  EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             +E + + +YV+ S I+++  +WD +  +R  M+E GV K PGCSWI
Sbjct: 960  VLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWI 1006



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 195/391 (49%), Gaps = 23/391 (5%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS--HSLITMYARCGKLDSARK 175
           DNF +P V  + A +  L  G  +H+ VFK G      V+  +SL+ MY +CG L +AR+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL-G 234
           VFD+I +RD VSWNSMI+   +    + ++ LF  M  E   P   TLVSV  +C  + G
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            + LGK V  + ++N  DL  Y  +AL+ MY + G +  A+ +F     KD+V+WN +I+
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG-LR 353
           + +QN    EA+M    M   GV PD +TL  VL AC+ +  L +G+ +  YA + G L 
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLI 567

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            + F           C        VF+ +       WNA+++  A N    +AL LF  M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY-SCMVDLYA 460
             E     PN  TF  VL ACV   +  +   +   ++   FG   K ++  + ++D+Y+
Sbjct: 628 ISESEFC-PNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFG---KDKYVQNALMDMYS 683

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           R G +  +     RM  K D +    ++  C
Sbjct: 684 RMGRVEISKTIFGRM-NKRDIVSWNTMITGC 713



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 15/293 (5%)

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           +  R    W  ++   +     ++A+  +  M      PD     +VL +   + DL LG
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 240 KWVEGFVVK--NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           K +   V K  +    +  + ++L++MYGKCG L  AR+VFD + ++D V+WN+MI    
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI-GALDLGKWVDKYASQRG-LRHD 355
           +      ++ LF  M    V+P   TL+ V  AC+ + G + LGK V  Y  + G LR  
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTY 469

Query: 356 I---------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                       G ++DA  +F      + VSWN +IS+L+ N R  EAL+    M  +G
Sbjct: 470 TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
              RP+ VT   VL AC     +  GR +      +  LI  S   + +VD+Y
Sbjct: 530 --VRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMY 580


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 289/559 (51%), Gaps = 21/559 (3%)

Query: 21  SLLREKLLSLLKK----CPSTKTVQQIHTQMLINFIQKP-----NFLLIRIIDLKDFNYA 71
           SLL    L LL K      S +  + +H +++      P     N+L+     L     A
Sbjct: 2   SLLSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESA 61

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            L+       N  ++  +I GL      +S +L  +++M+R G+ P++FT+P  F + A+
Sbjct: 62  RLVLRLTPARNVVSWTSLISGLAQNGH-FSTALVEFFEMRREGVVPNDFTFPCAFKAVAS 120

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L     G  +H+   K G   D  V  S   MY +    D ARK+FDEI ER+L +WN+ 
Sbjct: 121 LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAF 180

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           IS     G  +EA+E F   R  +  P+ IT  + L +C D   L LG  + G V+++  
Sbjct: 181 ISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGF 240

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           D +  + + LID YGKC  +  +  +F  M  K+ V+W +++ AY QN    +A +L+ R
Sbjct: 241 DTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLR 300

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
            +   V      +  VLSACA +  L+LG+ +  +A +  +   IF           CG 
Sbjct: 301 SRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGC 360

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           I+D+ + F++MP  N V+ N++I   A  G+   AL LFE M+  G    PN +TF+ +L
Sbjct: 361 IEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 420

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC  AG V+ G ++FD M S++G+ P +EHYSC+VD+  RAG +  A++F+++MP +  
Sbjct: 421 SACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT 480

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             V GAL  AC+      +     + L +++  +SGN+V+ S  FA    W ++  +R  
Sbjct: 481 ISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 540

Query: 541 MREKGVSKTPGCSWIGIDD 559
           ++  G+ K  G SWI + +
Sbjct: 541 LKGVGIKKGAGYSWITVKN 559


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 248/456 (54%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L P    Y  +  +CA    L    ++HS + +  L  D  + +SLI MY +CG +  AR
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            VFD I  RD+VSW  +I+GY++     EA+ L   M    F P   T  S L + G  G
Sbjct: 118 HVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG 177

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
              +G+ +    VK  +D + Y+GSAL+DMY +C  +  A RVFD + +K+ V+WNA+I 
Sbjct: 178 GRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIA 237

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+ G     +M F  M+  G      T   V SA A IGAL+ G+WV  +  + G + 
Sbjct: 238 GFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKL 297

Query: 355 DIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             F            GS+ DA KVF+ +   + V+WN M++A A  G   EA+  FE + 
Sbjct: 298 TAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIR 357

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K G   + N +TF+ VL+AC H GLV EG++ FD+M   + + P+ +HY   VDL  RAG
Sbjct: 358 KYG--IQLNQITFLSVLTACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLGRAG 414

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA  FV +MP +    V GALLGAC+  KN  + Q     + E++  ++G  V+   
Sbjct: 415 LLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYN 474

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+   WDD+A++R +M+  GV K P CSW+ I++
Sbjct: 475 IYASTGQWDDAARVRKMMKATGVKKEPACSWVEIEN 510



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 166/320 (51%), Gaps = 8/320 (2%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S++  C  +K +   + IH+ +  + +    FLL  +I +       + A  +F  I   
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR 126

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I G        + +L L   M R   +P  FT+     +         G  +
Sbjct: 127 DVVSWTYLITGYAQN-DMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQM 185

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K  LDED +V  +L+ MYARC ++D A +VFD +  ++ VSWN++I+G+++ G  
Sbjct: 186 HALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDG 245

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +  +  F  M+   F     T  SV  +   +G L  G+WV   ++K+   L  ++ + +
Sbjct: 246 ETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTI 305

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY K G++V AR+VFD +  +D+VTWN M+TA+AQ GL  EA+  F  ++  G+  ++
Sbjct: 306 LGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQ 365

Query: 322 ITLIGVLSACASIGALDLGK 341
           IT + VL+AC+  G +  GK
Sbjct: 366 ITFLSVLTACSHGGLVKEGK 385



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 140/287 (48%), Gaps = 15/287 (5%)

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           E  P      S++ +C    +L   + +   + ++++  + ++ ++LI MY KCGA+  A
Sbjct: 57  ELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDA 116

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           R VFD +  +DVV+W  +IT YAQN +  EA+ L   M  A   P   T    L A  + 
Sbjct: 117 RHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGAC 176

Query: 335 GALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMI 383
           G   +G+ +   A +  L  D++ GS           +D A++VF+ +   NEVSWNA+I
Sbjct: 177 GGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALI 236

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +  A  G     L+ F  M + G  A     T+  V SA    G +++GR +   M  S 
Sbjct: 237 AGFARKGDGETTLMKFAEMQRNGFGA--THFTYSSVFSALARIGALEQGRWVHAHMIKS- 293

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           G    +   + ++ +YA++G + +A    +R+ ++ D +    +L A
Sbjct: 294 GQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQR-DLVTWNTMLTA 339


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 193/575 (33%), Positives = 310/575 (53%), Gaps = 56/575 (9%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDF-------NYASLLFHQI 78
           KL++L+KKC + K  +QIH  +LIN       LLI  + L D        NYA  + H +
Sbjct: 5   KLITLMKKCSTVKQAKQIHAHILINGFTFLRPLLIHRMLLWDVTNYRTMANYAYSMLHHL 64

Query: 79  SRPNEYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
             P+ +++  +IR  +   QK  ++ ++ LY QM R  L P +        SCA +  + 
Sbjct: 65  HIPDSFSWGCVIRFFS---QKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDML 121

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G+S+H  V   G +   +V  +L+ +Y++ G + +ARKVFDE+  + +VSWNS++SGY 
Sbjct: 122 CGMSIHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYV 181

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV----------LGKW---VE 243
           K G   EA  LF  +  ++ +    +++S     G++G             L  W   + 
Sbjct: 182 KAGNLDEAQYLFSEIPGKDVISWN-SMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIA 240

Query: 244 GFV-------VKNKMDL----NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           GF+        +   D     N      +I  Y K G +  AR++FD M +KD++++NAM
Sbjct: 241 GFIDCGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAM 300

Query: 293 ITAYAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           I  YAQN    EA+ LFN M  +   V+PDK+TL  V+SAC+ +G L+   W++ + +  
Sbjct: 301 IACYAQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDF 360

Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           G+  D             CGSID A ++F ++   + V+++AMI     NG+A +A+ LF
Sbjct: 361 GIVLDDHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLF 420

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           E+M  E     PN VT+ G+L+A  HAGLV++G + F+ M   +GL+P  +HY  MVDL+
Sbjct: 421 EQMLAE--CIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKD-YGLVPSIDHYGIMVDLF 477

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RAG+L EA+  +  MP + +  V GALL AC+   N ++ +  +Q  +++E+  +G   
Sbjct: 478 GRAGYLDEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCS 537

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           + S I+A ++ WDD+ K+R  M  K  +   GCSW
Sbjct: 538 LLSSIYATVEKWDDAKKLRKGMEGKDFT---GCSW 569


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/503 (35%), Positives = 277/503 (55%), Gaps = 22/503 (4%)

Query: 67  DFNYASLLFHQ---ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
           D N +  +F     I R N    NVM+   +   +K   +++L+ +M + GL PD F+  
Sbjct: 223 DINLSERVFEDLDDIRRQN--IVNVMVTSFSQN-KKPGKAIRLFTRMLQEGLNPDEFSVC 279

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            +    + L  LN G  VHS   K GL  D  V  SL TMY++CG L+ +  +F EI  +
Sbjct: 280 SLL---SVLDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFK 336

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D   W SMISG+++ GY +EA+ LF  M +E   PDE TL +VL  C  L  L   K + 
Sbjct: 337 DNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIH 396

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           G+ ++  +D    +GSAL++ Y KCG+L  AR+V+D +   D V+ +++I+ Y+Q+GL  
Sbjct: 397 GYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQ 456

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC----- 358
           +  +LF  M  +G + D   +  +L A       +LG  V  Y ++ GL  +        
Sbjct: 457 DGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLL 516

Query: 359 ------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                 GSI+D  K F  +   + ++W A+I++ A +G+A+EAL ++  M ++G   +P+
Sbjct: 517 TMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKG--FKPD 574

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            VTF+GVLSAC H GLV+EG    + M   +G+ P++ HY CMVD   R+G L EA +F+
Sbjct: 575 KVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFI 634

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
              P K D +V G LL AC+   + ++ +   +  +E+E S++G YV  S I A +  WD
Sbjct: 635 NTRPIKPDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSLSNILAEVGEWD 694

Query: 533 DSAKMRALMREKGVSKTPGCSWI 555
           +  + R LM+  GV K PG S +
Sbjct: 695 EVEETRKLMKGTGVQKEPGWSSV 717



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 215/435 (49%), Gaps = 25/435 (5%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F  A  +F      N Y +N +I G     Q Y     L+++M     KPD++TY  V  
Sbjct: 23  FEDAYKVFRDTLSANVYCWNTIIAGALRN-QNYGAVFDLFHEMCNGFQKPDSYTYSSVLA 81

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +CA+L  L  G  V + V K G  ED  V  S++ +YA+CG +  AR+VF  I    +VS
Sbjct: 82  ACASLEELRFGKVVQARVIKCGA-EDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVS 140

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  M+SGY+K   A  A+E+F  MR      +  T+ SV+ +CG    +     V  +V 
Sbjct: 141 WTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQVHAWVF 200

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVF---DAMVNKDVVTWNAMITAYAQNGLSNE 304
           K+   L+  + +ALI M  K G +  + RVF   D +  +++V  N M+T+++QN    +
Sbjct: 201 KSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVTSFSQNKKPGK 258

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           AI LF RM   G+NPD+ ++  +LS    +  L+LGK V  Y  + GL  D+        
Sbjct: 259 AIRLFTRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTLKSGLILDLTVGSSLFT 315

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CGS++++  +F+++P  +   W +MIS     G   EA+ LF  M  EG    P++
Sbjct: 316 MYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEG--TSPDE 373

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T   VL+ C     +   + +      + G+       S +V+ Y++ G L  A    +
Sbjct: 374 STLAAVLTVCSSLPSLPRSKEIHGYTLRA-GIDRGMPLGSALVNTYSKCGSLKLARKVYD 432

Query: 474 RMPEKVDEIVLGALL 488
           R+PE +D +   +L+
Sbjct: 433 RLPE-MDPVSCSSLI 446



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 165/337 (48%), Gaps = 23/337 (6%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V  SLI  +++  + + A KVF +    ++  WN++I+G  +        +LF  M    
Sbjct: 9   VQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGF 68

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  T  SVL +C  L +L  GK V+  V+K   + + ++ ++++D+Y KCG +  AR
Sbjct: 69  QKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAR 127

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            VF  + N  VV+W  M++ Y ++  +  A+ +F  M+++GV  +  T+  V+SAC    
Sbjct: 128 EVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPS 187

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDM-PVTNEVSWNAMI 383
            +     V  +  + G   D              G I+ + +VFED+  +  +   N M+
Sbjct: 188 MVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMV 247

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA--CVHAGLVDEGRRLFDLMSS 441
           ++ + N +  +A+ LF RM +EG    P++ +   +LS   C++ G   +    + L S 
Sbjct: 248 TSFSQNKKPGKAIRLFTRMLQEG--LNPDEFSVCSLLSVLDCLNLG---KQVHSYTLKS- 301

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             GLI      S +  +Y++ G L E++   + +P K
Sbjct: 302 --GLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFK 336



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           S+LID + K      A +VF   ++ +V  WN +I    +N        LF+ M      
Sbjct: 11  SSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQK 70

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD  T   VL+ACAS+  L  GK V     + G   D+F           CG + +A +V
Sbjct: 71  PDSYTYSSVLAACASLEELRFGKVVQARVIKCG-AEDVFVCTSIVDLYAKCGHMAEAREV 129

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  +   + VSW  M+S    +  A  AL +F  M   G     N  T   V+SAC    
Sbjct: 130 FSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSG--VEINSCTVTSVISACGRPS 187

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           +V E  ++   +  S G    +   + ++ + +++G +    +  ER+ E +D+I
Sbjct: 188 MVCEASQVHAWVFKS-GFYLDTSVAAALISMNSKSGDI----NLSERVFEDLDDI 237


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/516 (31%), Positives = 281/516 (54%), Gaps = 21/516 (4%)

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           ++       A  +F  +   +   +N +I G   A   +  + +L+++M   G+KP   T
Sbjct: 175 LVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQA-GCFDVAFQLFFEMHGSGIKPSPIT 233

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
              +  +C  +  L  G  +H  V  +GL  D  V  S + MY++ G ++SAR VF ++ 
Sbjct: 234 MTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMP 293

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            R+LVSWN+MISG  + G   E+ +LF R+       D  T+VS+L  C     L  GK 
Sbjct: 294 TRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKI 353

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + G  +++  + N  + +A++D+Y KCG+L  A  VF+ M +++V+TW AM+   AQNG 
Sbjct: 354 LHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGH 412

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           + +A+ LF +M+  G+  + +T + ++ +CA +G+L  G+ +  +  + G   DI     
Sbjct: 413 AEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTA 472

Query: 358 -------CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                  CG I+ A ++F    ++ +V  WN+MI+    +G  ++A+ ++ +M +EG   
Sbjct: 473 LVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEG--L 530

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           +PN  TF+ +LSAC H+ LV++G  LF+ M     + P  +HY+C+VDL +RAG   EA 
Sbjct: 531 KPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQ 590

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
             +E+MP +    VL ALL  C+  KN ++  +    LL +++ N G Y++ S I+A  +
Sbjct: 591 ALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEAR 650

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQSNW 565
            WD    +R LMR +G+ KTPG S +     +  NW
Sbjct: 651 RWDKVDYIRGLMRNRGLKKTPGYSLV-----ETGNW 681



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 245/470 (52%), Gaps = 23/470 (4%)

Query: 16  ELNDPSLLREKLLSLLKKCPSTKT---VQQIHTQMLINFIQKPNFLLIRII----DLKDF 68
           + N    +    LSLL++  S+K    V+  H Q++ N +    F+  +++    DL+  
Sbjct: 23  QFNQLPTIIHNFLSLLRE--SSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSL 80

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
             A  +F Q  +P     N M+ G   +  +Y  +L+L+  M+   L+ D+ +  F   +
Sbjct: 81  EAARYVFDQFFQPKGLLCNAMLCGYLQS-GRYRETLELFGLMRSRNLEVDSCSCTFALKA 139

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CA+ L    G+ + SS  + G++++  V  S+I+   + GK+  A++VFD +  +D+V W
Sbjct: 140 CASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCW 199

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           NS+I GY + G    A +LF  M      P  IT+ S++ +CG +G+L LGK + G+V+ 
Sbjct: 200 NSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLG 259

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +  +  + ++ +DMY K G +  AR VF  M  +++V+WNAMI+   +NGL  E+  L
Sbjct: 260 LGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDL 319

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKW-----VDKYASQRGLRHDIF-----C 358
           F+R+  +    D  T++ +L  C+   +L  GK      +  + S   L   I      C
Sbjct: 320 FHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKC 379

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS+  A  VF  M   N ++W AM+  LA NG A +AL LF +M +EG AA  N VTF+ 
Sbjct: 380 GSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAA--NSVTFVS 437

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           ++ +C H G +  GR +   +    G      + + +VD+YA+ G ++ A
Sbjct: 438 LVHSCAHLGSLKRGRSIHGHL-FRLGFAFDIVNMTALVDMYAKCGKINLA 486


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/474 (35%), Positives = 263/474 (55%), Gaps = 25/474 (5%)

Query: 109 QMKRLGLKPDNFTYPFVFI--SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR 166
           +MK   LK       FV I   C N++ L     +H+ + K  L +   +   ++ +   
Sbjct: 47  EMKLRALKIREMEDMFVPILKDCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNH 103

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR-----EEEFLPDEI 221
            G+ + A  +F  + + +   +N+MI  Y        A+ ++ +M      E    PD+ 
Sbjct: 104 YGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKF 163

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           T   V+ SC  L    LGK V G V K     N  + ++L++MY KC +L  A RVF+ M
Sbjct: 164 TFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEM 223

Query: 282 VNKD--VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
             +D  + +W A+++ YA+ G   +A+  F RM+  G+ PD+I+L+ VL  CA +GAL+L
Sbjct: 224 TERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALEL 283

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           GKW+  YA + G   +I            CGSID   ++F+ M   + +SW+ MI  LA 
Sbjct: 284 GKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLAN 343

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
           +GRA EA+ LF+ M K      P+ +TF+G+L+AC HAGL++EG R F+ M   + + P 
Sbjct: 344 HGRAREAIELFQEMQK--AKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPG 401

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            EHY C+V+L   +G L +A + V++MP K D  + G+LL +C+   N  ++   M+ LL
Sbjct: 402 VEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLL 461

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
           E+E +++GNYV+ S ++A+L  WD  ++MR LMR K + KTPGCS I +D+  Q
Sbjct: 462 ELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQ 515



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/475 (33%), Positives = 248/475 (52%), Gaps = 64/475 (13%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           + +  + +LK CP+   +++IH  ++   + + +FL+ +++D+     +  YA+LLF  +
Sbjct: 58  MEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGV 117

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-------LKPDNFTYPFVFISCAN 131
           + PN + +N MIR      + Y  ++ +Y QM  LG       + PD FT+PFV  SCA 
Sbjct: 118 ADPNAFLYNAMIRAYKHN-KVYVLAITVYKQM--LGNPHGENPIFPDKFTFPFVVKSCAG 174

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD--LVSWN 189
           L+  + G  VH  VFK G   +  V +SL+ MY +C  LD A +VF+E+ ERD  + SW 
Sbjct: 175 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWT 234

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +++SGY+++G   +A+E F RM+     PDEI+LVSVL  C  LG L LGKW+  +  K 
Sbjct: 235 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA 294

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               N  + +ALI+MY KCG++   RR+FD M  +DV++W+ MI   A +G + EAI LF
Sbjct: 295 GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELF 354

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369
             M+ A + P  IT +G+L+ACA  G L+ G                        L+ FE
Sbjct: 355 QEMQKAKIEPSIITFVGLLTACAHAGLLNEG------------------------LRYFE 390

Query: 370 DMPVTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            M     +      +  +++ L  +GR  +AL L ++M +     +P+   +  +LS+C 
Sbjct: 391 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPR-----KPDSPIWGSLLSSCR 445

Query: 425 HAG----LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
             G     V     L +L  +  G      +Y  + +LYA  G     WD V RM
Sbjct: 446 SHGNLKIAVIAMEHLLELEPADTG------NYVLLSNLYADLG----KWDGVSRM 490



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 138/275 (50%), Gaps = 23/275 (8%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y+ +L+ + +M+ +G++PD  +   V   CA L AL  G  +H    K G   +  V ++
Sbjct: 246 YADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNA 305

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI MYA+CG +D  R++FD+++ERD++SW++MI G +  G A+EA+ELF  M++ +  P 
Sbjct: 306 LIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 365

Query: 220 EITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMG----SALIDMYGKCGALVPA 274
            IT V +L +C   G L  G ++ E      K D N   G      L+++ G  G L  A
Sbjct: 366 IITFVGLLTACAHAGLLNEGLRYFESM----KRDYNIEPGVEHYGCLVNLLGLSGRLDQA 421

Query: 275 RRVFDAMVNK-DVVTWNAMITAYAQNG-LSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
             +   M  K D   W +++++   +G L    I + + ++    +     L+  L A  
Sbjct: 422 LELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYA-- 479

Query: 333 SIGALDLGKW-----VDKYASQRGLRHDIFCGSID 362
                DLGKW     + K    + ++    C SI+
Sbjct: 480 -----DLGKWDGVSRMRKLMRSKSMKKTPGCSSIE 509


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/498 (33%), Positives = 272/498 (54%), Gaps = 14/498 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F ++   +   +N M+ G +     ++ +L+L+  M+R G+   +FT+  +    A
Sbjct: 189 ARRVFLEMHDKDAVTYNAMMMGCSKE-GLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +  L  G  VH+ V +     +  V++SL+  Y++C  LD  R++FDE+ ERD VS+N 
Sbjct: 248 GMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNV 307

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+ Y+    A   + LF  M++  F    +   ++L   G L D+ +GK +   +V   
Sbjct: 308 IIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLG 367

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +     +G+ALIDMY KCG L  A+  F     K  ++W A+IT Y QNG   EA+ LF+
Sbjct: 368 LASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFS 427

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+ AG+ PD+ T   ++ A +S+  + LG+ +  Y  + G +  +F           CG
Sbjct: 428 DMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCG 487

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D+AL+ F++MP  N +SWNA+ISA A  G A  A+ +FE M   G    P+ VTF+ V
Sbjct: 488 CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG--FNPDSVTFLSV 545

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC H GL DE  + F LM   + + P  EHY+C++D   R G  S+    +  MP K 
Sbjct: 546 LAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKA 605

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+  ++L +C+   N ++++     L  +E +++  YVI S I+A    W+D+A ++ 
Sbjct: 606 DPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKK 665

Query: 540 LMREKGVSKTPGCSWIGI 557
           +MR++GV K  G SW+ I
Sbjct: 666 IMRDRGVRKESGYSWVEI 683



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 201/423 (47%), Gaps = 20/423 (4%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D   A  LF      N   + +M+R    A  + S +L L+  M   G+ PD  T   V 
Sbjct: 89  DLPAAQHLFLSSPHRNATTWTIMMRAHAAA-GRTSDALSLFRAMLGEGVIPDRVTVTTVL 147

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
               NL       S+H    K GLD    V ++L+  Y + G L +AR+VF E+ ++D V
Sbjct: 148 ----NLPGCT-VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAV 202

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           ++N+M+ G SK G   +A++LF  MR         T  S+L     +  L+LG  V   V
Sbjct: 203 TYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALV 262

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +++   LN ++ ++L+D Y KC  L   RR+FD M  +D V++N +I AYA N  +   +
Sbjct: 263 LRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVL 322

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF 357
            LF  M+  G +   +    +LS   S+  + +GK +       GL           D++
Sbjct: 323 RLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMY 382

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG +D A   F +    + +SW A+I+    NG+  EAL LF  M + G   RP+  T
Sbjct: 383 SKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAG--LRPDRAT 440

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F  ++ A     ++  GR+L   +  S G        S +VD+YA+ G L EA    + M
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 476 PEK 478
           PE+
Sbjct: 500 PER 502



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LS+    P     +QIH Q+++  +   + L   +ID+       + A   F   S  +
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKS 402

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  +I G     Q +  +L+L+  M+R GL+PD  T+  +  + ++L  +  G  +H
Sbjct: 403 AISWTALITGYVQNGQ-HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S + + G          L+ MYA+CG LD A + FDE+ ER+ +SWN++IS Y+  G AK
Sbjct: 462 SYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAK 521

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF-VVKNKMDLNFYMG--S 259
            A+++F  M    F PD +T +SVL +C   G  +  + ++ F ++K++  ++ +    +
Sbjct: 522 NAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG--LADECMKYFHLMKHQYSISPWKEHYA 579

Query: 260 ALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            +ID  G+ G     +++   M  K D + W +++ +   +G  N+ +      K  G+ 
Sbjct: 580 CVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG--NQELARVAADKLFGME 637

Query: 319 PDKITLIGVLSAC-ASIGALDLGKWVDKYASQRGLRHD 355
           P   T   +LS   A  G  +    V K    RG+R +
Sbjct: 638 PTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKE 675



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           KN   LN      ++  Y   G L  A+ +F +  +++  TW  M+ A+A  G +++A+ 
Sbjct: 72  KNIFSLNL-----ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALS 126

Query: 308 LFNRMKYAGVNPDKITLIGVLS--ACA--SIGALDLGKWVDKYASQRGLRHDIFC--GSI 361
           LF  M   GV PD++T+  VL+   C   S+    +   +D +        D +C  G +
Sbjct: 127 LFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A +VF +M   + V++NAM+   +  G   +AL LF  M + G  A     TF  +L+
Sbjct: 187 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA--THFTFSSILT 244

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
                  +  G ++  L+  S  ++    + S ++D Y++   L +     + MPE+ D 
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS-LLDFYSKCDCLDDMRRLFDEMPER-DN 302

Query: 482 IVLGALLGA 490
           +    ++ A
Sbjct: 303 VSYNVIIAA 311


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 249/461 (54%), Gaps = 53/461 (11%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M +  + P +FT+  +  +C+ +  L  G +VH  ++K G D    V  +L+  Y   GK
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           +  AR+VFDE+ ERD+ +W +MIS +++ G    A +LF  M                  
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMP----------------- 103

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
                            V+N    N     A+ID Y +   +  A  +F  M N+D+++W
Sbjct: 104 -----------------VRNTASWN-----AMIDGYSRLRNVESAELLFSQMPNRDIISW 141

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
             MI  Y+QN    EA+ +FN M+  G++PD++T+  ++SACA +GALDLGK +  YA +
Sbjct: 142 TTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAME 201

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            G   D++           CGS+D +L VF  +   N   WN++I  LA +G A EAL +
Sbjct: 202 MGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAM 261

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F RM +E    +PN VTFI VL AC HAGLV+EGR+ F  MS  F + P+ EHY CMVDL
Sbjct: 262 FSRMQRE--KIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDL 319

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             +AG L +A + V  M  + + ++ GALLG C+  +N  ++Q  +     +E +NSG Y
Sbjct: 320 LGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYY 379

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKT-PGCSWIGID 558
            +   ++A +  W + A +RA M+E GV KT PG SWI +D
Sbjct: 380 TLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMD 420



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 148/273 (54%), Gaps = 11/273 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           ++S+  +     + +Q+  +M +      N ++     L++   A LLF Q+   +  ++
Sbjct: 82  MISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISW 141

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
             MI   +   +++  +L ++ +M+  G+ PD  T   +  +CA+L AL+ G  +H    
Sbjct: 142 TTMIACYSQN-KQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAM 200

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           ++G D D ++  +LI MYA+CG LD +  VF ++R+++L  WNS+I G +  GYA+EA+ 
Sbjct: 201 EMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALA 260

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-----MDLNFYMGSAL 261
           +F RM+ E+  P+ +T +SVLG+C   G +  G+  + F+  ++      ++  Y    +
Sbjct: 261 MFSRMQREKIKPNGVTFISVLGACTHAGLVEEGR--KRFLSMSRDFSIPPEIEHY--GCM 316

Query: 262 IDMYGKCGALVPARRVFDAM-VNKDVVTWNAMI 293
           +D+ GK G L  A  +  +M +  + V W A++
Sbjct: 317 VDLLGKAGLLEDALELVRSMRMEPNSVIWGALL 349


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/509 (34%), Positives = 277/509 (54%), Gaps = 22/509 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF +  +P+  ++N +I G   A +  + ++ L+ +M+ LG + D FT   +  +C 
Sbjct: 93  ARQLFDENPQPDTVSYNTLISGYADARETVA-AMVLFKRMRELGFEVDGFTLSGLIAACC 151

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWN 189
           + + L     +H      G D    V+++ +T Y++ G L  A  VF  +   RD VSWN
Sbjct: 152 DRVDLIK--QLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWN 209

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI  Y +     +A+ L+  M  + F  D  TL SVL +   L  L+ G+   G ++K 
Sbjct: 210 SMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA 269

Query: 250 KMDLNFYMGSALIDMYGKCGA---LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEA 305
               N ++GS LID Y KCG    +  + +VF  +++ D+V WN MI+ Y+ N   S EA
Sbjct: 270 GFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEA 329

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC------- 358
           +  F +M+  G  PD  + + V SAC+++ +   GK +   A +  +  +          
Sbjct: 330 VKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALIS 389

Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G++ DA +VF+ MP  N VS+N MI   A +G   EAL L++RM   G A  PN+
Sbjct: 390 LYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIA--PNN 447

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +TF+ +LSAC H G VDEG++ F+ M  +F + P++EHYSCM+DL  RAG L EA  F++
Sbjct: 448 ITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP K   +   ALLGAC+K KN  +++R  + L+ ++   +  YV+ + ++A+   W++
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEE 567

Query: 534 SAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
            A +R  MR K + K PGCSWI +   K 
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIEVKKKKH 596



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 182/400 (45%), Gaps = 54/400 (13%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           ++  YA+  K+  AR++FDE  + D VS+N++ISGY+       A+ LF RMRE  F  D
Sbjct: 80  IVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVD 139

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             TL  ++ +C D  DL+  K +  F V    D    + +A +  Y K G L  A  VF 
Sbjct: 140 GFTLSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFY 197

Query: 280 AMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
            M   +D V+WN+MI AY Q+    +A+ L+  M + G   D  TL  VL+A  S+  L 
Sbjct: 198 GMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLI 257

Query: 339 LGKWVDKYASQRGLRHDIFCGS--------------IDDALKVFEDMPVTNEVSWNAMIS 384
            G+       + G   +   GS              + D+ KVF+++   + V WN MIS
Sbjct: 258 GGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMIS 317

Query: 385 ALAFN-GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS- 442
             + N   + EA+  F +M + G   RP+D +F+ V SAC +     +G+++  L   S 
Sbjct: 318 GYSMNEEHSEEAVKSFRQMQRIG--HRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSN 375

Query: 443 ----------------------------FGLIPK--SEHYSCMVDLYARAGHLSEAWDFV 472
                                       F  +P+  +  ++CM+  YA+ GH +EA    
Sbjct: 376 IPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLY 435

Query: 473 ERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           +RM +     + I   A+L AC      D  Q+    + E
Sbjct: 436 QRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKE 475



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 48/272 (17%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM------------- 281
           DL  GK +    VK+ +  + Y+ +  +++Y KCG L  AR  FD+              
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVK 82

Query: 282 ------------------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
                                D V++N +I+ YA    +  A++LF RM+  G   D  T
Sbjct: 83  AYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFT 142

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLR-----HDIFC------GSIDDALKVFEDMP 372
           L G+++AC     +DL K +  +A   G       ++ F       G + +A+ VF  M 
Sbjct: 143 LSGLIAACCD--RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 373 -VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
            + +EVSWN+MI A   +    +AL L++ M  +G   + +  T   VL+A      +  
Sbjct: 201 GLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKG--FKIDMFTLASVLNALTSLDHLIG 258

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           GR+    +  + G    S   S ++D Y++ G
Sbjct: 259 GRQFHGKLIKA-GFHQNSHVGSGLIDFYSKCG 289


>gi|224135053|ref|XP_002327555.1| predicted protein [Populus trichocarpa]
 gi|222836109|gb|EEE74530.1| predicted protein [Populus trichocarpa]
          Length = 417

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 49/365 (13%)

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I  PN +AFNVM+RGL T  +KY    +LYY++K LGLK +NFTYPF+FI+C N+    H
Sbjct: 7   IKSPN-HAFNVMLRGLATTRKKYDFCAELYYKLKSLGLKANNFTYPFLFIACGNVWGFLH 65

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G   H  VFK GL+ D++V+ SLITMY RCG++  AR VFDE+ ER+L SWNSMISGYSK
Sbjct: 66  GKIDHRLVFKAGLEGDEYVNRSLITMYKRCGEMGFARMVFDEMGERELASWNSMISGYSK 125

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
             +AK+A  LF  MRE+ F PDE+TLVSVLG+CGDLG   LG+WVEGFV++ K+++N Y+
Sbjct: 126 TSFAKKAFGLFMEMREKGFEPDEMTLVSVLGACGDLG---LGRWVEGFVLEKKVEVNSYV 182

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY----AQNGLSNEAIMLFNRMK 313
           GSALIDMYGKC  L+ ARRVFD+M NKDVVTWNA+IT      +QNG SNE I+LFN MK
Sbjct: 183 GSALIDMYGKCRDLISARRVFDSMPNKDVVTWNAIITGSLDRCSQNGASNEVIVLFNGMK 242

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
                                GA DLGKWV+    + G         +D A         
Sbjct: 243 -------------------KTGAFDLGKWVETIVIKPG-------PGVDPAKGPGPGFHG 276

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
           +  V+          +G  +EA  L ++M       +P ++    +L AC      D G 
Sbjct: 277 STRVN----------SGLLNEAWDLIKKM-----LGKPYEIVLGSLLGACQRCRNADVGE 321

Query: 434 RLFDL 438
           R+  L
Sbjct: 322 RVIQL 326



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 205/367 (55%), Gaps = 37/367 (10%)

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           EL+ +++      +  T   +  +CG++   + GK     V K  ++ + Y+  +LI MY
Sbjct: 33  ELYYKLKSLGLKANNFTYPFLFIACGNVWGFLHGKIDHRLVFKAGLEGDEYVNRSLITMY 92

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            +CG +  AR VFD M  +++ +WN+MI+ Y++   + +A  LF  M+  G  PD++TL+
Sbjct: 93  KRCGEMGFARMVFDEMGERELASWNSMISGYSKTSFAKKAFGLFMEMREKGFEPDEMTLV 152

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--ID---------DALKVFEDMPVT 374
            VL AC  +G   LG+WV+ +  ++ +  + + GS  ID          A +VF+ MP  
Sbjct: 153 SVLGACGDLG---LGRWVEGFVLEKKVEVNSYVGSALIDMYGKCRDLISARRVFDSMPNK 209

Query: 375 NEVSWNAMISA----LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           + V+WNA+I+      + NG ++E ++LF  M K G             L   V   ++ 
Sbjct: 210 DVVTWNAIITGSLDRCSQNGASNEVIVLFNGMKKTGAFD----------LGKWVETIVIK 259

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G  +        G      H S  V+    +G L+EAWD +++M  K  EIVLG+LLGA
Sbjct: 260 PGPGVDPAKGPGPGF-----HGSTRVN----SGLLNEAWDLIKKMLGKPYEIVLGSLLGA 310

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           CQ+ +N DV +RV+QL LE+E SNSG YVI SKI+AN++ WDDSAK R LMR+ GVSKTP
Sbjct: 311 CQRCRNADVGERVIQLFLEMELSNSGKYVILSKIYANMRRWDDSAKTRVLMRQCGVSKTP 370

Query: 551 GCSWIGI 557
             +WI I
Sbjct: 371 FYNWIDI 377


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/464 (35%), Positives = 263/464 (56%), Gaps = 15/464 (3%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           QM  LG +     Y  +   C +  A+  G  VH+ + K       ++   LI +Y +C 
Sbjct: 52  QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCD 111

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            L  AR +FDE+ +R++VSW +MIS YS+ G+A EA+ LF  M   +  P+  T  ++L 
Sbjct: 112 CLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 171

Query: 229 SC-GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
           SC G LG    G+ +    +K   + + ++GS+L+DMY K G +  A  VF  +  +DVV
Sbjct: 172 SCYGSLG-FETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVV 230

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
              A+I+ YAQ GL  EA+ LF +++  G+N + +T   VL+A + + AL+ GK V  + 
Sbjct: 231 ACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHV 290

Query: 348 SQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G            D++  CG++  A ++F+ MP    +SWNAM+   + +G A E L
Sbjct: 291 LRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVL 350

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCM 455
            LF+ M +E    +P+ +T++ VLS C H  L D G  +F ++++   G+ P   HY C+
Sbjct: 351 ELFKLM-REENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCV 409

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           VDL  RAG + EA+DF+++MP      + G+LLG+C+   + ++   V Q LLE+E  N+
Sbjct: 410 VDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENA 469

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           GNYVI S ++A+   W+D   +R LM+EK V+K PG SW+ +D 
Sbjct: 470 GNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQ 513



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 225/462 (48%), Gaps = 42/462 (9%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           S+L +C S + +   Q++HT M+        +L  R+I L +       A  +F ++ + 
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI   +     +  +L L+ +M R   +P++FT+  +  SC   L    G  +
Sbjct: 127 NVVSWTAMISAYSQRGFAFE-ALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 185

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS   K   +    V  SL+ MYA+ G++  A  VF  + ERD+V+  ++ISGY++MG  
Sbjct: 186 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLD 245

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA++LF +++ E    + +T  SVL +   L  L  GK V   V+++       + ++L
Sbjct: 246 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSL 305

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG +  ARR+FD+M  +  ++WNAM+  Y+++G++ E + LF  M+    V PD
Sbjct: 306 IDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPD 365

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            IT + VLS C+     D+G              +IF   ++    +  D+       + 
Sbjct: 366 SITYLAVLSGCSHGQLEDMGL-------------EIFYNMVNGKDGIEPDIG-----HYG 407

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL---VDEGRRLF 436
            ++  L   GR  EA    ++M        P    +  +L +C VH+ +   +  G++L 
Sbjct: 408 CVVDLLGRAGRVEEAFDFIKKM-----PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLL 462

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L   + G      +Y  + +LYA AG   +  +  + M EK
Sbjct: 463 ELEPENAG------NYVILSNLYASAGKWEDMRNIRDLMQEK 498


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/449 (35%), Positives = 258/449 (57%), Gaps = 14/449 (3%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +  SC    A+  G  +H+ + ++G+  +  ++  L+ +Y  C  L +A  +FD I 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R+L  WN MI GY+  G  + A+ L+ +MR+   +PD+ T   VL +C  L  +  GK 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +   V+++ ++ + ++G+ALIDMY KCG +  AR+VFD +  +DVV WN+M+  Y+QNG 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH------- 354
            +E++ L   M + G+ P + T +  ++A A  G L  GK +  Y+ + G          
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 355 --DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
             D++   GS++ A  +FE +     VSWNAMI+  A +G A+EAL LF+ M    G   
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK---GKVL 300

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+ +TF+GVL+AC H GL++EG+  F  M S F + P  +HY+CM+DL    G L EA+ 
Sbjct: 301 PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYK 360

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            +  M  + D  V GALL +C+   N ++ +  ++ L+E+E  + GNYVI S ++A    
Sbjct: 361 LIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGK 420

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           WD  A++R LM  KG+ K+  CSWI + +
Sbjct: 421 WDGVARLRDLMMNKGLKKSIACSWIEVGN 449



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 272/546 (49%), Gaps = 64/546 (11%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL+ C   K ++   Q+H ++    I     L  ++++L         A LLF +IS+ 
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 82  NEYAFNVMIRGLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           N + +NVMIRG   AW   Y  ++ LYYQM+  GL PD FT+PFV  +C+ L A+  G  
Sbjct: 66  NLFLWNVMIRGY--AWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V + GL+ D  V  +LI MYA+CG ++SAR+VFD+I ERD+V WNSM++ YS+ G 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             E++ L   M      P E T V  + +  D G L  GK + G+  ++  + N  + +A
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+DMY K G++  AR +F+ +  K VV+WNAMIT YA +G +NEA+ LF  MK   V PD
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPD 302

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            IT +GVL+AC+  G L+ GK            H  F   I D    F   P      + 
Sbjct: 303 HITFVGVLAACSHGGLLNEGK-----------MH--FRSMISD----FNIWPTVQH--YT 343

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG----RRLF 436
            MI  L   GR  EA  L   M  E     P+   +  +L +C   G V+ G     +L 
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEMRVE-----PDAGVWGALLHSCKIHGNVEMGELALEKLV 398

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
           +L     G      +Y  + ++YA+AG     WD V R+     ++++   L        
Sbjct: 399 ELEPDDGG------NYVILSNMYAQAG----KWDGVARL----RDLMMNKGLKKSIACSW 444

Query: 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
            +V  +V   L     S   ++  S  I+A LK      +   LM+E G +   G  +  
Sbjct: 445 IEVGNKVHAFL-----SEDTSHPKSEAIYAELK------RTGKLMKEAGYAPQVGSVFHD 493

Query: 557 IDDPKQ 562
           ++D ++
Sbjct: 494 VEDDEK 499


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 278/483 (57%), Gaps = 27/483 (5%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHV 156
           +++  +L+   +M   G++PD FT   V  +C++L  L  G  +H+   K G LDE+  V
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE- 215
             +L+ MY  C ++ S  +VFD + +R +  WN+MI+GY++  Y +EA+ LF  M E   
Sbjct: 337 GSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAG 396

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
            L +  T+  V+ +C   G     + + GFVVK  +D + ++ +AL+DMY + G +  A+
Sbjct: 397 LLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAK 456

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY-----------AGVNPDKITL 324
           R+F  M ++D+VTWN +IT Y  +    +A+++ ++M+              + P+ ITL
Sbjct: 457 RIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITL 516

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
           + +L +CA++ AL  GK +  YA +  L  D+            CG +  + KVF+ +P+
Sbjct: 517 MTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPI 576

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            N ++WN ++ A   +G + +A+ +   M  +G   +PN+VTFI V +AC H+G+V+EG 
Sbjct: 577 RNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQG--VKPNEVTFISVFAACSHSGMVNEGL 634

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQ 492
           ++F  M   +G+ P S+HY+C+VDL  RAG + EA+  +  +P   D+     +LLGAC+
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACR 694

Query: 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552
              N ++ +   Q L+++E + + +YV+ + I+++  +W  + ++R  M+ +GV K PGC
Sbjct: 695 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGC 754

Query: 553 SWI 555
           SWI
Sbjct: 755 SWI 757



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 233/466 (50%), Gaps = 33/466 (7%)

Query: 41  QQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
           +QIH  +      ++ +   N L+       DF     +F +IS  N+ ++N +I  L +
Sbjct: 113 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 172

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL---ALNHGVSVHSSVFKIGLDE 152
            ++K+  +L+ +  M    ++P +FT   V ++C+N      L  G  VH+   + G + 
Sbjct: 173 -FEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-EL 230

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           +  + ++L+ MY + GKL S++ +      RDLV+WN+++S   +     EA+E    M 
Sbjct: 231 NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMV 290

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGAL 271
            E   PD  T+ SVL +C  L  L  GK +  + +KN  +D N ++GSAL+DMY  C  +
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 350

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSA 330
           +   RVFD M ++ +  WNAMIT YAQN    EA++LF  M + AG+  +  T+ GV+ A
Sbjct: 351 LSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA 410

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSW 379
           C   GA    + +  +  +RGL  D F            G ID A ++F  M   + V+W
Sbjct: 411 CVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTW 470

Query: 380 NAMISALAFNGRAHEALLL------FERMSKEGGAA---RPNDVTFIGVLSACVHAGLVD 430
           N +I+   F+ R  +ALL+       ER + E  +    +PN +T + +L +C     + 
Sbjct: 471 NTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALA 530

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +G+ +      +  L       S +VD+YA+ G L  +    +++P
Sbjct: 531 KGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 575



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 197/388 (50%), Gaps = 19/388 (4%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYA 165
           Y  M  LG+KPDNF +P +  + A+L  ++ G  +H+ V+K G   D   V+++L+ +Y 
Sbjct: 81  YIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYR 140

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           +CG   +  KVFD I ER+ VSWNS+IS        + A+E F  M +E+  P   TLVS
Sbjct: 141 KCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVS 200

Query: 226 VLGSCGDLG---DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           V  +C +      L++GK V  + ++ K +LN ++ + L+ MYGK G L  ++ +  +  
Sbjct: 201 VALACSNFPMPEGLLMGKQVHAYGLR-KGELNSFIINTLVAMYGKMGKLASSKVLLGSFE 259

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +D+VTWN ++++  QN    EA+     M   GV PD  T+  VL AC+ +  L  GK 
Sbjct: 260 GRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKE 319

Query: 343 VDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           +  YA + G L  + F GS           +    +VF+ M       WNAMI+  A N 
Sbjct: 320 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNE 379

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              EALLLF  M +  G    N  T  GV+ ACV +G   +   +   +    GL     
Sbjct: 380 YDEEALLLFIEMEESAGLL-ANSTTMAGVVPACVRSGAFSKKEAIHGFVVKR-GLDRDRF 437

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + ++D+Y+R G +  A     +M ++
Sbjct: 438 VQNALMDMYSRLGKIDIAKRIFGKMEDR 465



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 145/355 (40%), Gaps = 22/355 (6%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  ++    +    +EAV  +  M      PD     ++L +  DL D+ LGK +   V 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 248 KNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           K    ++   + + L+++Y KCG      +VFD +  ++ V+WN++I++         A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYASQRGLRHDIFC----- 358
             F  M    V P   TL+ V  AC++      L +GK V  Y  ++G  +         
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVA 240

Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G +  +  +       + V+WN ++S+L  N +  EAL     M  EG    P+ 
Sbjct: 241 MYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEG--VEPDG 298

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T   VL AC H  ++  G+ L      +  L   S   S +VD+Y     +       +
Sbjct: 299 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFD 358

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
            M ++   +    + G  Q + + +       LLL IE   S   + +S   A +
Sbjct: 359 GMFDRKIGLWNAMITGYAQNEYDEEA------LLLFIEMEESAGLLANSTTMAGV 407


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 240/416 (57%), Gaps = 14/416 (3%)

Query: 156 VSHS-LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +SH+ LI  + + G LDSA KVFDE+ ER++ +WN+M+SG  +  + +  + LF  M E 
Sbjct: 24  MSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHEL 83

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
            FLPDE TL SVL  C  L     GK V  +V+K   + N  +GS+L  MY K G+L   
Sbjct: 84  GFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEG 143

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            +V  AM  ++VV WN +I   AQNG     + L+N MK +G+ PDKITL+ V+S+ A +
Sbjct: 144 EKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAEL 203

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
             L  G+ +   A + G    +            CG ++D++K   D    + V W++MI
Sbjct: 204 ATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMI 263

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +A  F+GR  EA+ LFE+M +EG     NDVTF+ +L AC H GL ++G   F LM   +
Sbjct: 264 AAYGFHGRGEEAVHLFEQMEQEGLGG--NDVTFLSLLYACSHNGLKEKGMGFFKLMVEKY 321

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           GL P+ EHY+C+VDL  R+G L EA   +  MP + D ++   LL AC+  +N D++ R 
Sbjct: 322 GLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRT 381

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            + +L +   +S  YV+ S I A+ K W D +K+R  MR++ V K PG SW+ + +
Sbjct: 382 AEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKN 437



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 19/393 (4%)

Query: 47  MLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKL 106
           M +  I   N L+   +   D + A  +F ++   N   +N M+ GL   ++   + L L
Sbjct: 18  MPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQ-FEFNENGLFL 76

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR 166
           + +M  LG  PD FT   V   CA L A   G  VH+ V K G + +  V  SL  MY +
Sbjct: 77  FREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMK 136

Query: 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
            G L    KV   +R R++V+WN++I+G ++ G+ +  ++L+  M+     PD+ITLVSV
Sbjct: 137 SGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSV 196

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           + S  +L  L  G+ +    +K   +    + S+LI MY KCG L  + +      + D 
Sbjct: 197 ISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDS 256

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK----- 341
           V W++MI AY  +G   EA+ LF +M+  G+  + +T + +L AC+  G  + G      
Sbjct: 257 VLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKL 316

Query: 342 WVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAH 393
            V+KY  +  L H     D+    G +D+A  +   MP+  +V  W  ++SA     R H
Sbjct: 317 MVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSAC----RIH 372

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
               +  R ++E     P D +   VL + +HA
Sbjct: 373 RNADMATRTAEEILRLNPQD-SATYVLLSNIHA 404



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 238 LGKWVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
           +G+  E     N M + N    + LI+ + + G L  A +VFD M+ ++V TWNAM++  
Sbjct: 5   MGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGL 64

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            Q   +   + LF  M   G  PD+ TL  VL  CA + A   GK V  Y  + G   ++
Sbjct: 65  IQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNL 124

Query: 357 FC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                        GS+ +  KV + M + N V+WN +I+  A NG     L L+  M   
Sbjct: 125 VVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMS 184

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
           G   RP+ +T + V+S+      + +G+++
Sbjct: 185 G--LRPDKITLVSVISSSAELATLFQGQQI 212


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 251/429 (58%), Gaps = 14/429 (3%)

Query: 141 VHSSVFKIG-LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +H    + G +  D+ V+++ +  YA+CG L  A  VF  +  + + SWN++I G+ + G
Sbjct: 422 IHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNG 481

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + ++A++L+  MR     PD  T+ S+L +C  L  L  GK + G +++N  +L+ ++  
Sbjct: 482 FPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICI 541

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           +L+ +Y +CG ++ A+  FD M  K++V WN MI  ++QN    +A+ +F++M  + + P
Sbjct: 542 SLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWP 601

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D+I++IG L AC+ + AL LGK +  +A +  L    F           CG ++ +  +F
Sbjct: 602 DEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIF 661

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + + +  EV+WN +I+    +G   +A+ LF+ M   G   RP+ VTFI +L+AC HAGL
Sbjct: 662 DRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAG--FRPDSVTFIALLTACNHAGL 719

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V EG      M S FG+ PK EHY+C+VD+  RAG L+EA + V  +P+K D  +  +LL
Sbjct: 720 VAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLL 779

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            +C+  ++ D+ ++V   LLE+    + NYV+ S  +A L  WD+  KMR  M+E G+ K
Sbjct: 780 SSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQK 839

Query: 549 TPGCSWIGI 557
             GCSWI I
Sbjct: 840 DAGCSWIEI 848



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 209/384 (54%), Gaps = 34/384 (8%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L LY  M+  GL+PD FT   +  +CA L +L+ G  +H S+ + G + D+ +  SL++
Sbjct: 486 ALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVS 545

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           +Y +CGK+  A+  FD + E++LV WN+MI+G+S+  +  +A+++F +M   +  PDEI+
Sbjct: 546 LYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEIS 605

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           ++  LG+C  +  L LGK +  F VK+ +  + ++  +LIDMY KCG +  ++ +FD + 
Sbjct: 606 IIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVH 665

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-K 341
            K  VTWN +IT Y  +G   +AI LF  M+ AG  PD +T I +L+AC   G +  G +
Sbjct: 666 LKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLE 725

Query: 342 WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           ++ +  S  G++  +                      +  ++  L   GR +EAL L   
Sbjct: 726 YLGQMQSLFGIKPKL--------------------EHYACVVDMLGRAGRLNEALELVNE 765

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYA 460
           +       +P+   +  +LS+C +   +D G ++ + +     L P K+E+Y  + + YA
Sbjct: 766 LPD-----KPDSRIWSSLLSSCRNYRDLDIGEKVANKL---LELGPDKAENYVLISNFYA 817

Query: 461 RAGHLSEAWDFVERMPEKVDEIVL 484
           R G     WD V +M +++ EI L
Sbjct: 818 RLG----KWDEVRKMRQRMKEIGL 837



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 236/482 (48%), Gaps = 47/482 (9%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQ-KPNF-----LLIRIIDLK---DFNYAS-LLFH 76
           LL+ C   K ++   +IH     NFI   P+F     L+ R++ +    D  Y S L+F+
Sbjct: 99  LLQLCGEYKNIEIGRKIH-----NFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFN 153

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLAL 135
              R N + +N ++ G       +  ++ ++ +M  L    PDNFT P V  +C  +  +
Sbjct: 154 ASRRKNLFLWNALLSGYLRN-SLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDV 212

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G +VH    K  +  D  V ++LI MY + G ++SA KVFD++ +R+LVSWNS++   
Sbjct: 213 RLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYAC 272

Query: 196 SKMGYAKEAVELFGRM--REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            + G  +E+  LF  +   +E  +PD  T+V+V+  C   G++ LG    G  +K  +  
Sbjct: 273 LENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG 332

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + S+L+DMY KCG L  AR +FD    K+V++WN+MI  Y+++     A  L  +M+
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLFDTN-EKNVISWNSMIGGYSKDRDFRGAFELLRKMQ 391

Query: 314 YAG-VNPDKITLIGVLSAC-ASIGALDLGKWVDKYASQRG------LRHDIF------CG 359
               V  +++TL+ VL  C   I  L L K +  YA + G      L  + F      CG
Sbjct: 392 MEDKVKVNEVTLLNVLPVCEEEIQFLKL-KEIHGYALRHGFIQSDELVANAFVAGYAKCG 450

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+  A  VF  M      SWNA+I     NG   +AL L+  M   G    P+  T   +
Sbjct: 451 SLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLM--RGSGLEPDLFTIASL 508

Query: 420 LSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMP 476
           LSAC     +  G+ +   ++ + F L    + + C  +V LY + G +  A  F + M 
Sbjct: 509 LSACARLKSLSCGKEIHGSMLRNGFEL----DEFICISLVSLYVQCGKILLAKLFFDNME 564

Query: 477 EK 478
           EK
Sbjct: 565 EK 566



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 174/363 (47%), Gaps = 23/363 (6%)

Query: 19  DPSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYA 71
           +P L    + SLL  C   K++   ++IH  ML N  +   F+ I ++ L         A
Sbjct: 499 EPDLF--TIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLA 556

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            L F  +   N   +N MI G +     +  +L +++QM    + PD  +      +C+ 
Sbjct: 557 KLFFDNMEEKNLVCWNTMINGFSQNEFPFD-ALDMFHQMLSSKIWPDEISIIGALGACSQ 615

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           + AL  G  +H    K  L E   V+ SLI MYA+CG ++ ++ +FD +  +  V+WN +
Sbjct: 616 VSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVL 675

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV-----LGKWVEGFV 246
           I+GY   G+ ++A+ELF  M+   F PD +T +++L +C   G +      LG+    F 
Sbjct: 676 ITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFG 735

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEA 305
           +K K++      + ++DM G+ G L  A  + + + +K D   W++++++       +  
Sbjct: 736 IKPKLE----HYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIG 791

Query: 306 IMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364
             + N++   G  PDK    + + +  A +G  D  + + +   + GL+ D  C  I+  
Sbjct: 792 EKVANKLLELG--PDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIG 849

Query: 365 LKV 367
            KV
Sbjct: 850 GKV 852


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 293/558 (52%), Gaps = 27/558 (4%)

Query: 24  REKLLSLLKKCPS---TKTVQQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLF 75
           R+ L+S+L+ C     +    Q+H  +L     +N I   N+L+      ++   A  +F
Sbjct: 6   RQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLIT-SNYLIDMYCKCREPLMAYKVF 64

Query: 76  HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
             +   N  +++ ++ G          SL L+ +M R G+ P+ FT+     +C  L AL
Sbjct: 65  DSMPERNVVSWSALMSGHVLNGD-LKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNAL 123

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G+ +H    KIG +    V +SL+ MY++CG+++ A KVF  I +R L+SWN+MI+G+
Sbjct: 124 EKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGF 183

Query: 196 SKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
              GY  +A++ FG M+E      PDE TL S+L +C   G +  GK + GF+V++    
Sbjct: 184 VHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHC 243

Query: 254 --NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             +  +  +L+D+Y KCG L  AR+ FD +  K +++W+++I  YAQ G   EA+ LF R
Sbjct: 244 PSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR 303

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ--RGLRHDIF---------CGS 360
           ++      D   L  ++   A    L  GK +   A +   GL   +          CG 
Sbjct: 304 LQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGL 363

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +D+A K F +M + + +SW  +I+    +G   +++ +F  M +      P++V ++ VL
Sbjct: 364 VDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN--IEPDEVCYLAVL 421

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC H+G++ EG  LF  +  + G+ P+ EHY+C+VDL  RAG L EA   ++ MP K +
Sbjct: 422 SACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPN 481

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             +   LL  C+   + ++ + V ++LL I++ N  NYV+ S ++     W++    R L
Sbjct: 482 VGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNAREL 541

Query: 541 MREKGVSKTPGCSWIGID 558
              KG+ K  G SW+ I+
Sbjct: 542 GNIKGLKKEAGMSWVEIE 559


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/488 (32%), Positives = 269/488 (55%), Gaps = 15/488 (3%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI GL+    K+S +++ +  M+  G  P  F +     +CA+L ++  G  +
Sbjct: 5   NLVSWTAMISGLSQN-SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 63

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G+  +  V  +L  MY++CG +  A KVF+E+  +D VSW +MI GYSK+G  
Sbjct: 64  HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 123

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+  F +M +EE   D+  L S LG+CG L     G+ V   VVK   + + ++G+AL
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 183

Query: 262 IDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
            DMY K G +  A  VF      ++VV++  +I  Y +     + + +F  ++  G+ P+
Sbjct: 184 TDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 243

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
           + T   ++ ACA+  AL+ G  +     +     D F           CG ++ A++ F+
Sbjct: 244 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFD 303

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           ++    E++WN+++S    +G   +A+ +FERM   G   +PN +TFI +L+ C HAGLV
Sbjct: 304 EIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG--VKPNAITFISLLTGCSHAGLV 361

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           +EG   F  M  ++G++P  EHYSC++DL  RAG L EA +F+ RMP + +     + LG
Sbjct: 362 EEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLG 421

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           AC+   + ++ +   + L+++E  NSG  V+ S I+AN + W+D   +R  MR+  V K 
Sbjct: 422 ACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKL 481

Query: 550 PGCSWIGI 557
           PG SW+ +
Sbjct: 482 PGYSWVDV 489



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 148/300 (49%), Gaps = 17/300 (5%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R+LVSW +MISG S+     EA+  F  MR    +P +    S + +C  LG + +GK 
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 62

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +    +K  +    ++GS L DMY KCGA+  A +VF+ M  KD V+W AMI  Y++ G 
Sbjct: 63  MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 122

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
             EA++ F +M    V  D+  L   L AC ++ A   G+ V     + G   DIF G+ 
Sbjct: 123 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 182

Query: 361 ----------IDDALKVFE-DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                     ++ A  VF  D    N VS+  +I       +  + L +F  + ++G   
Sbjct: 183 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG--I 240

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            PN+ TF  ++ AC +   +++G +L   +M  +F   P     S +VD+Y + G L +A
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQA 298



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 47/273 (17%)

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  +++V+W AMI+  +QN   +EAI  F  M+  G  P +      + ACAS+G++++G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K +   A + G+  ++F           CG++ DA KVFE+MP  +EVSW AMI   +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 390 GRAHEALLLFERMSKEGGAARPN----DVTFIGVLSAC-----VHAGLVD--------EG 432
           G   EALL F++M  E      +     +   G L AC     VH+ +V          G
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 433 RRLFDLMSSS---------FGLIPKSEH---YSCMVDLYARAGHLSEAWD-FVE--RMPE 477
             L D+ S +         FG+  +  +   Y+C++D Y     + +    FVE  R   
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 478 KVDEIVLGALLGACQKQ----KNTDVSQRVMQL 506
           + +E    +L+ AC  Q    + T +  +VM++
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 273


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 287/549 (52%), Gaps = 20/549 (3%)

Query: 30  LLKKCPSTKTVQ---QIHTQMLINFIQKP-----NFLLIRIIDLKDFNYASLLFHQISRP 81
           LLK   ST +++    +H +++      P     N+L+     L     A L+       
Sbjct: 12  LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  ++ GL      +S +L  +++M+R G+ P++FT+P VF + A+L     G  +
Sbjct: 72  NVVSWTSLVSGLAQNGH-FSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQI 130

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K G   D  V  S   MY +    D ARK+FDEI ER+L +WN+ IS     G  
Sbjct: 131 HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRP 190

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KEA+E F   R     P+ IT    L +C D   L LG  + G V ++  D +  + + L
Sbjct: 191 KEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGL 250

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           ID YGKC  +  +  +F  M  K+ V+W +++ AY QN    +A +L+ R +   V    
Sbjct: 251 IDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSD 310

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
             +  VLSACA +  L+LG+ +  +A +  +  +IF           CG I+D+ + F++
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDE 370

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MP  N V+ N++I   A  G+   AL LFE M+  G    PN +TF+ +LSAC  AG V+
Sbjct: 371 MPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVE 430

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G ++FD M S++G+ P +EHYSC+VD+  RAG + +A++F+++MP K    V GAL  A
Sbjct: 431 NGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNA 490

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+      +     + L +++  +SGN+V+ S  FA    W ++  +R  M+  G+ K  
Sbjct: 491 CRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGA 550

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 551 GYSWITVKN 559


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/523 (31%), Positives = 277/523 (52%), Gaps = 21/523 (4%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK---YSHSLKLY 107
           F+   N LL    +++  + A +LF +I   +   FN +I G    ++K   Y+ ++ L+
Sbjct: 177 FLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITG----YEKDGLYTEAIHLF 232

Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
            +M++ G KP +FT+  V  +   L     G  +H      G   D  V + ++  Y++ 
Sbjct: 233 LKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKH 292

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
            ++   R +F+E+ E D VS+N +IS YS+    +E++ LF  M+   F        ++L
Sbjct: 293 DRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATML 352

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
               +L  L +G+ V    +    D   ++G++L+DMY KC     A  +F ++  +  V
Sbjct: 353 SIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTV 412

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W A+I+ Y Q GL    + LF +M+ A +  D+ T   VL A A   +L LGK +  + 
Sbjct: 413 SWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFI 472

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G   ++F           CGSI DA++VFE+MP  N VSWNA+ISA A NG    A+
Sbjct: 473 IRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAI 532

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
             F +M + G   +P+ V+ +GVL AC H G V++G   F  MS  +G+ PK +HY+CM+
Sbjct: 533 GAFTKMIQSG--LQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACML 590

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES-SNS 515
           DL  R G  +EA   ++ MP + DEI+  ++L AC+  KN  +++R  + L  +E   ++
Sbjct: 591 DLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDA 650

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             YV  S I+A    W++   ++  MRE+G+ K P  SW+ ++
Sbjct: 651 AAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVN 693



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 210/448 (46%), Gaps = 18/448 (4%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N ++   + + D + A  LF  +       + +++ G       +  + KL+ QM R   
Sbjct: 79  NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILM-GWYAGNNHFDEAFKLFRQMCRSCT 137

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH--VSHSLITMYARCGKLDSA 173
            PD  T+  +   C + +  N    VH+   K+G D +    V + L+  Y    +LD A
Sbjct: 138 LPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLA 197

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
             +F+EI ++D V++N++I+GY K G   EA+ LF +MR+    P + T   VL +   L
Sbjct: 198 CVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGL 257

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
            D  LG+ + G  V      +  +G+ ++  Y K   ++  R +F+ M   D V++N +I
Sbjct: 258 HDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVI 317

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD---KYASQR 350
           ++Y+Q     E++ LF  M+  G +        +LS  A++ +L +G+ V      A+  
Sbjct: 318 SSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATAD 377

Query: 351 GLRH------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            + H      D++  C   D+A  +F+ +   + VSW A+IS     G     L LF +M
Sbjct: 378 SILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKM 437

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
              G   R +  TF  VL A      +  G++L   +  S G +      S +VD+YA+ 
Sbjct: 438 --RGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRS-GNLENVFSGSGLVDMYAKC 494

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGA 490
           G + +A    E MP++ + +   AL+ A
Sbjct: 495 GSIKDAVQVFEEMPDR-NAVSWNALISA 521



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 20/327 (6%)

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           ++++I+ Y + G L SAR +FD + +R +V+W  ++  Y+   +  EA +LF +M     
Sbjct: 78  TNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCT 137

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG--SALIDMYGKCGALVPA 274
           LPD +T  ++L  C D         V  F VK   D N ++   + L+  Y +   L  A
Sbjct: 138 LPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLA 197

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
             +F+ +++KD VT+N +IT Y ++GL  EAI LF +M+ +G  P   T  GVL A   +
Sbjct: 198 CVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGL 257

Query: 335 GALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMI 383
               LG+ +   +   G   D   G+           + +   +F +MP  + VS+N +I
Sbjct: 258 HDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVI 317

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF--DLMSS 441
           S+ +   +  E+L LF  M   G   R  +  F  +LS   +   +  GR++    ++++
Sbjct: 318 SSYSQAEQYEESLNLFREMQCMGFDRR--NFPFATMLSIAANLSSLQVGRQVHCQAIVAT 375

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEA 468
           +  ++      + +VD+YA+     EA
Sbjct: 376 ADSILHVG---NSLVDMYAKCEMFDEA 399



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 47/253 (18%)

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-------------YA 315
           G +  A +V+D M +K+ V+ N MI+ Y + G  + A  LF+ M              YA
Sbjct: 58  GQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYA 117

Query: 316 GVN------------------PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           G N                  PD +T   +L  C      +    V  +A + G   ++F
Sbjct: 118 GNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLF 177

Query: 358 ---CG----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
              C            +D A  +FE++   + V++N +I+    +G   EA+ LF +M +
Sbjct: 178 LTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQ 237

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G   +P+D TF GVL A V       G++L  L S + G    +   + ++  Y++   
Sbjct: 238 SG--HKPSDFTFSGVLKAVVGLHDFALGQQLHGL-SVTTGFSRDASVGNQILHFYSKHDR 294

Query: 465 LSEAWDFVERMPE 477
           + E  +    MPE
Sbjct: 295 VLETRNLFNEMPE 307


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 254/467 (54%), Gaps = 16/467 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L ++ +M+  GLKPD      +  +CA + +   G  +H  V K  +  D  V+ +L++
Sbjct: 413 ALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVS 472

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY RC     A  +F+ +  +D+V+WN++I+G++K G  + A+E+F R++     PD  T
Sbjct: 473 MYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGT 532

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +VS+L +C  L DL LG    G ++KN ++   ++  ALIDMY KCG+L  A  +F    
Sbjct: 533 MVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNK 592

Query: 283 N-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
           + KD V+WN MI  Y  NG +NEAI  FN+MK   V P+ +T + +L A + +  L    
Sbjct: 593 HVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAM 652

Query: 342 WVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNG 390
                  + G       G+           +  + K F +M     +SWNAM+S  A +G
Sbjct: 653 AFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHG 712

Query: 391 RAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           +   AL LF  M +      P D V++I VLSAC HAGL+ EGR +F  M+    L P  
Sbjct: 713 QGEVALALFSLMQE---THVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSM 769

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+CMVDL   AG   E    +++MP + D  V GALLGAC+   N  + +  +  LL+
Sbjct: 770 EHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHLLK 829

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIG 556
           +E  N+ +Y++ S I+A    W D+ + R+ M + G+ K PG SW+G
Sbjct: 830 LEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWVG 876



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 208/408 (50%), Gaps = 36/408 (8%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFN 87
           L LL+ C     + QIH ++++                      +L  + I+ P+   +N
Sbjct: 56  LHLLRSCKYLNPLLQIHARLIVQ-------------------QCTLAPNSITNPSLILWN 96

Query: 88  VMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147
            +IR  +     +  ++K Y  M  +GL+PD +T+ FV  +C   L  + GV++H  +  
Sbjct: 97  SLIRAYSR-LHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIAS 155

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
             L+ D  +   L+ MY + G LD+ARKVFD++  +D+ SWN+MISG S+     EA+E+
Sbjct: 156 RELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEI 215

Query: 208 FGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           F RM+ EE + PD ++++++  +   L D+   K + G+VV+    +   + ++LIDMY 
Sbjct: 216 FQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRC--VFGVVSNSLIDMYS 273

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           KCG +  A ++FD M  KD ++W  M+  Y  +G   E + L + MK   +  +KI+++ 
Sbjct: 274 KCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVN 333

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
            + A      L+ GK V  YA Q G+  DI            CG +  A + F  +   +
Sbjct: 334 SVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRD 393

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
            V W+A +SAL   G   EAL +F+ M  EG   +P+      ++SAC
Sbjct: 394 LVVWSAFLSALVQAGYPGEALSIFQEMQHEG--LKPDKTILSSLVSAC 439



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 213/422 (50%), Gaps = 16/422 (3%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y   L+L  +MKR  +K +  +     ++      L  G  VH+   ++G+  D  V+  
Sbjct: 309 YFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATP 368

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           +++MYA+CG+L  A++ F  +  RDLV W++ +S   + GY  EA+ +F  M+ E   PD
Sbjct: 369 IVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPD 428

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           +  L S++ +C ++    LGK +  +V+K  M  +  + + L+ MY +C + + A  +F+
Sbjct: 429 KTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFN 488

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  KDVV WN +I  + + G    A+ +F R++ +GV PD  T++ +LSACA +  L L
Sbjct: 489 RMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYL 548

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE-DMPVTNEVSWNAMISALA 387
           G        + G+  ++            CGS+  A  +F  +  V +EVSWN MI+   
Sbjct: 549 GICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYL 608

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            NG A+EA+  F +M  E  + RPN VTF+ +L A  +  ++ E    F       G I 
Sbjct: 609 HNGCANEAISTFNQMKLE--SVRPNLVTFVTILPAVSYLSILREAMA-FHACIIRMGFIS 665

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
            +   + ++D+YA++G LS +      M  K   I   A+L         +V+  +  L+
Sbjct: 666 STLIGNSLIDMYAKSGQLSYSEKCFHEMENK-GTISWNAMLSGYAMHGQGEVALALFSLM 724

Query: 508 LE 509
            E
Sbjct: 725 QE 726



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 225/458 (49%), Gaps = 43/458 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISC 129
           A  +F ++   +  ++N MI GL+ +      +L+++ +M+   G++PD+ +   +  + 
Sbjct: 181 ARKVFDKMPGKDVASWNAMISGLSQS-SNPCEALEIFQRMQMEEGVEPDSVSILNLAPAV 239

Query: 130 ANLLALN-----HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           + L  ++     HG  V   VF +       VS+SLI MY++CG++  A ++FD++  +D
Sbjct: 240 SRLEDVDSCKSIHGYVVRRCVFGV-------VSNSLIDMYSKCGEVKLAHQIFDQMWVKD 292

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
            +SW +M++GY   G   E ++L   M+ +    ++I++V+ + +  +  DL  GK V  
Sbjct: 293 DISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHN 352

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           + ++  M  +  + + ++ MY KCG L  A+  F ++  +D+V W+A ++A  Q G   E
Sbjct: 353 YALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGE 412

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ +F  M++ G+ PDK  L  ++SACA I +  LGK +  Y  +  +  DI        
Sbjct: 413 ALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVS 472

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               C S   A+ +F  M   + V+WN +I+     G    AL +F R+   G   +P+ 
Sbjct: 473 MYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSG--VQPDS 530

Query: 414 VTFIGVLSAC-----VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            T + +LSAC     ++ G+   G  + + + S   +         ++D+YA+ G L  A
Sbjct: 531 GTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHV------KVALIDMYAKCGSLCTA 584

Query: 469 WDFVERMPEKVDEI-----VLGALLGACQKQKNTDVSQ 501
            +         DE+     + G L   C  +  +  +Q
Sbjct: 585 ENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQ 622



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 198/406 (48%), Gaps = 42/406 (10%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K F YA  LF+++   +  A+N +I G T        +L+++ +++  G++PD+ T   +
Sbjct: 478 KSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRL-ALEMFLRLQLSGVQPDSGTMVSL 536

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RD 184
             +CA L  L  G+  H ++ K G++ + HV  +LI MYA+CG L +A  +F   +  +D
Sbjct: 537 LSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKD 596

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
            VSWN MI+GY   G A EA+  F +M+ E   P+ +T V++L +   L  L        
Sbjct: 597 EVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHA 656

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            +++     +  +G++LIDMY K G L  + + F  M NK  ++WNAM++ YA +G    
Sbjct: 657 CIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEV 716

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364
           A+ LF+ M+   V  D ++ I VLSAC                     RH    G I + 
Sbjct: 717 ALALFSLMQETHVPVDSVSYISVLSAC---------------------RH---AGLIQEG 752

Query: 365 LKVFEDMPVTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
             +F+ M   + +      +  M+  L   G   E L L ++M  E     P+   +  +
Sbjct: 753 RNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTE-----PDAQVWGAL 807

Query: 420 LSAC-VHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAG 463
           L AC +H+ +      L  L+     L P++  HY  + D+YA+ G
Sbjct: 808 LGACKMHSNVKLGEIALHHLLK----LEPRNAVHYIVLSDIYAQCG 849



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 48/365 (13%)

Query: 13  AFTELNDPSLLREKLL---------------SLLKKCPSTKTVQQ---IHTQMLINFIQK 54
            FT+  DP L  E  L               SLL  C     +      H  ++ N I+ 
Sbjct: 504 GFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIES 563

Query: 55  PNFLLIRIIDL----KDFNYASLLFHQISR-PNEYAFNVMIRGLTTAWQKYSH------S 103
              + + +ID+         A  LFH      +E ++NVMI G       Y H      +
Sbjct: 564 EMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAG-------YLHNGCANEA 616

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           +  + QMK   ++P+  T+  +  + + L  L   ++ H+ + ++G      + +SLI M
Sbjct: 617 ISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDM 676

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           YA+ G+L  + K F E+  +  +SWN+M+SGY+  G  + A+ LF  M+E     D ++ 
Sbjct: 677 YAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSY 736

Query: 224 VSVLGSCGDLGDLVLGKWV-EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM- 281
           +SVL +C   G +  G+ + +    K+ ++ +    + ++D+ G  G       + D M 
Sbjct: 737 ISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMP 796

Query: 282 VNKDVVTWNAMITAYA-QNGLSNEAIMLFNRMKYAGVNP-DKITLIGVLSACASIGALDL 339
              D   W A++ A    + +    I L + +K    N    I L  + + C        
Sbjct: 797 TEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQC-------- 848

Query: 340 GKWVD 344
           G+W+D
Sbjct: 849 GRWID 853



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 19/115 (16%)

Query: 373 VTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +TN   + WN++I A +      EA+  ++ MS  G    P+  TF  VL AC  A    
Sbjct: 87  ITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMG--LEPDKYTFTFVLKACTGALDFH 144

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSC-------MVDLYARAGHLSEAWDFVERMPEK 478
           EG  +   ++S            C       +VD+Y + GHL  A    ++MP K
Sbjct: 145 EGVAIHQDIAS--------RELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGK 191


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/498 (33%), Positives = 272/498 (54%), Gaps = 14/498 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F ++   +   +N M+ G +     ++ +L+L+  M+R G+   +FT+  +    A
Sbjct: 189 ARRVFLEMHDKDAVTYNAMMMGCSKE-GLHTQALQLFAAMRRAGIPATHFTFSSILTVAA 247

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +  L  G  VH+ V +     +  V++SL+  Y++C  LD  R++FDE+ ERD VS+N 
Sbjct: 248 GMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNV 307

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+ Y+    A   + LF  M++  F    +   ++L   G L D+ +GK +   +V   
Sbjct: 308 IIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLG 367

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +     +G+ALIDMY KCG L  A+  F     K  ++W A+IT Y QNG   EA+ LF+
Sbjct: 368 LASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFS 427

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+ AG+ PD+ T   ++ A +S+  + LG+ +  Y  + G +  +F           CG
Sbjct: 428 DMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCG 487

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D+AL+ F++MP  N +SWNA+ISA A  G A  A+ +FE M   G    P+ VTF+ V
Sbjct: 488 CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG--FNPDSVTFLSV 545

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC H GL DE  + F LM   + + P  EHY+C++D   R G  S+    +  MP K 
Sbjct: 546 LAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKA 605

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+  ++L +C+   N ++++     L  +E +++  YVI S I+A    W+D+A ++ 
Sbjct: 606 DPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKK 665

Query: 540 LMREKGVSKTPGCSWIGI 557
           +MR++GV K  G SW+ I
Sbjct: 666 IMRDRGVRKESGYSWVEI 683



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 207/444 (46%), Gaps = 20/444 (4%)

Query: 46  QMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLK 105
           QM    I   N +L       D   A  LF      N   + +M+R    A  + S +L 
Sbjct: 68  QMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAA-GRTSDALS 126

Query: 106 LYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165
           L+  M   G+ PD  T   V     NL       S+H    K GLD    V ++L+  Y 
Sbjct: 127 LFRAMLGEGVIPDRVTVTTVL----NLPGCT-VPSLHPFAIKFGLDTHVFVCNTLLDAYC 181

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           + G L +AR+VF E+ ++D V++N+M+ G SK G   +A++LF  MR         T  S
Sbjct: 182 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSS 241

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L     +  L+LG  V   V+++   LN ++ ++L+D Y KC  L   RR+FD M  +D
Sbjct: 242 ILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 301

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
            V++N +I AYA N  +   + LF  M+  G +   +    +LS   S+  + +GK +  
Sbjct: 302 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 361

Query: 346 YASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
                GL           D++  CG +D A   F +    + +SW A+I+    NG+  E
Sbjct: 362 QLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEE 421

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           AL LF  M + G   RP+  TF  ++ A     ++  GR+L   +  S G        S 
Sbjct: 422 ALQLFSDMRRAG--LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSV 478

Query: 455 MVDLYARAGHLSEAWDFVERMPEK 478
           +VD+YA+ G L EA    + MPE+
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMPER 502



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
           +LS+    P     +QIH Q+++  +   + L   +ID+       + A   F   S  +
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKS 402

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
             ++  +I G     Q +  +L+L+  M+R GL+PD  T+  +  + ++L  +  G  +H
Sbjct: 403 AISWTALITGYVQNGQ-HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLH 461

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S + + G          L+ MYA+CG LD A + FDE+ ER+ +SWN++IS Y+  G AK
Sbjct: 462 SYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAK 521

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF-VVKNKMDLNFYMG--S 259
            A+++F  M    F PD +T +SVL +C   G  +  + ++ F ++K++  ++ +    +
Sbjct: 522 NAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG--LADECMKYFHLMKHQYSISPWKEHYA 579

Query: 260 ALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            +ID  G+ G     +++   M  K D + W +++ +   +G  N+ +      K  G+ 
Sbjct: 580 CVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHG--NQELARVAADKLFGME 637

Query: 319 PDKITLIGVLSAC-ASIGALDLGKWVDKYASQRGLRHD 355
           P   T   +LS   A  G  +    V K    RG+R +
Sbjct: 638 PTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKE 675



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 15/249 (6%)

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           KN   LN      ++  Y   G L  A+ +F +  +++  TW  M+ A+A  G +++A+ 
Sbjct: 72  KNIFSLNL-----ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALS 126

Query: 308 LFNRMKYAGVNPDKITLIGVLS----ACASIGALDLGKWVDKYASQRGLRHDIFC--GSI 361
           LF  M   GV PD++T+  VL+       S+    +   +D +        D +C  G +
Sbjct: 127 LFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLL 186

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A +VF +M   + V++NAM+   +  G   +AL LF  M + G  A     TF  +L+
Sbjct: 187 AAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPA--THFTFSSILT 244

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
                  +  G ++  L+  S  ++    + S ++D Y++   L +     + MPE+ D 
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS-LLDFYSKCDCLDDMRRLFDEMPER-DN 302

Query: 482 IVLGALLGA 490
           +    ++ A
Sbjct: 303 VSYNVIIAA 311


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/547 (31%), Positives = 285/547 (52%), Gaps = 51/547 (9%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPN 82
           L  +L   P  +T++ +H+++++  ++  + L ++++     LKD   A  +F +I   N
Sbjct: 45  LGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERN 104

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
               NVMIR        Y   +K++  M    ++PD++T+P V  +C+    +  G  +H
Sbjct: 105 VIIINVMIRSYVNNG-FYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIH 163

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
            S  K+GL     V + L++MY +CG L  AR V DE+  RD+VSWNS++ GY++     
Sbjct: 164 GSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFD 223

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A+E+   M   +   D  T+ S+L +            V     +N M +         
Sbjct: 224 DALEVCREMESVKISHDAGTMASLLPA------------VSNTTTENVMYVK-------- 263

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DM+ K G              K +V+WN MI  Y +N +  EA+ L++RM+  G  PD +
Sbjct: 264 DMFFKMG-------------KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAV 310

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           ++  VL AC    AL LGK +  Y  ++ L  ++            CG ++ A  VFE+M
Sbjct: 311 SITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM 370

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + VSW AMISA  F+GR  +A+ LF ++   G    P+ + F+  L+AC HAGL++E
Sbjct: 371 KSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLV--PDSIAFVTTLAACSHAGLLEE 428

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           GR  F LM+  + + P+ EH +CMVDL  RAG + EA+ F++ M  + +E V GALLGAC
Sbjct: 429 GRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGAC 488

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   +TD+       L ++    SG YV+ S I+A    W++   +R +M+ KG+ K PG
Sbjct: 489 RVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPG 548

Query: 552 CSWIGID 558
            S + ++
Sbjct: 549 ASNVEVN 555


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 254/473 (53%), Gaps = 13/473 (2%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           +S +++ QM+   + P+ +TYP +  +C  L  L  G  +HS + K     + +V   LI
Sbjct: 473 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 532

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MYA+ GKLD+A  +      +D+VSW +MI+GY++  +  +A+  F +M +     DE+
Sbjct: 533 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 592

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            L + + +C  L  L  G+ +      +    +    +AL+ +Y +CG +  +   F+  
Sbjct: 593 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
              D + WNA+++ + Q+G + EA+ +F RM   G++ +  T    + A +    +  GK
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGK 712

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            V    ++ G   +             CGSI DA K F ++   NEVSWNA+I+A + +G
Sbjct: 713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 772

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              EAL  F++M       RPN VT +GVLSAC H GLVD+G   F+ M+S +GL PK E
Sbjct: 773 FGSEALDSFDQMIHSN--VRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE 830

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY C+VD+  RAG LS A +F++ MP K D +V   LL AC   KN ++ +     LLE+
Sbjct: 831 HYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL 890

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
           E  +S  YV+ S ++A  K WD     R  M+EKGV K PG SWI + +   S
Sbjct: 891 EPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 943



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 242/483 (50%), Gaps = 20/483 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LS  KK  S +  +Q+H  +L + F       N L+     L +   A  +F  +S+ +
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              +N +I GL+        +++L+ +M   GL+PD+ T   + ++C+    L  G  +H
Sbjct: 354 AVTYNTLINGLSQCGYG-EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH 412

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +   K+G   ++ +  +L+ +YA+C  +++A   F E    ++V WN M+  Y  +   +
Sbjct: 413 AYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR 472

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            +  +F +M+ EE +P++ T  S+L +C  LGDL LG+ +   ++K    LN Y+ S LI
Sbjct: 473 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 532

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY K G L  A  +      KDVV+W  MI  Y Q    ++A+  F +M   G+  D++
Sbjct: 533 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 592

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDM 371
            L   +SACA + AL  G+ +   A   G   D+            CG I+++   FE  
Sbjct: 593 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + ++WNA++S    +G   EAL +F RM++EG     N+ TF   + A      + +
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG--IDNNNFTFGSAVKAASETANMKQ 710

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G+++  +++ + G   ++E  + ++ +YA+ G +S+A      +  K +E+   A++ A 
Sbjct: 711 GKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAY 768

Query: 492 QKQ 494
            K 
Sbjct: 769 SKH 771



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 240/514 (46%), Gaps = 25/514 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
           V+QIH ++L   ++    +   +IDL   N     A  +F  +   +  ++  MI GL+ 
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 265

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
             +  + +++L+  M  LG+ P  + +  V  +C  + +L  G  +H  V K+G   D +
Sbjct: 266 N-ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++L+++Y   G L SA  +F  + +RD V++N++I+G S+ GY ++A+ELF RM  + 
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  TL S++ +C   G L  G+ +  +  K     N  +  AL+++Y KC  +  A 
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
             F     ++VV WN M+ AY        +  +F +M+   + P++ T   +L  C  +G
Sbjct: 445 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
            L+LG+ +     +   + + +            G +D A  +       + VSW  MI+
Sbjct: 505 DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 564

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
                    +AL  F +M   G   R ++V     +SAC     + EG+++      S G
Sbjct: 565 GYTQYNFDDKALTTFRQMLDRG--IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-G 621

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
                   + +V LY+R G + E++   E+  E  D I   AL+   Q+  N + + RV 
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQ-TEAGDNIAWNALVSGFQQSGNNEEALRVF 680

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + +  E  ++ N+   S +    K   ++A M+
Sbjct: 681 -VRMNREGIDNNNFTFGSAV----KAASETANMK 709



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 192/377 (50%), Gaps = 21/377 (5%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRP 81
           S+LK C     ++   QIH+Q++    Q   ++   +ID    L   + A  +  + +  
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  MI G T  +     +L  + QM   G++ D         +CA L AL  G  +
Sbjct: 555 DVVSWTTMIAGYTQ-YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+     G   D    ++L+T+Y+RCGK++ +   F++    D ++WN+++SG+ + G  
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+ +F RM  E    +  T  S + +  +  ++  GK V   + K   D    + +AL
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KCG++  A + F  +  K+ V+WNA+I AY+++G  +EA+  F++M ++ V P+ 
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793

Query: 322 ITLIGVLSACASIGALDLG-KWVDKYASQRGLR---HDIFC--------GSIDDALKVFE 369
           +TL+GVLSAC+ IG +D G  + +   S+ GL        C        G +  A +  +
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853

Query: 370 DMPVT-NEVSWNAMISA 385
           +MP+  + + W  ++SA
Sbjct: 854 EMPIKPDALVWRTLLSA 870



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 195/398 (48%), Gaps = 28/398 (7%)

Query: 108 YQMKRL------GLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           +Q KR+      G++P++ T  ++   C     +L+ G  +HS + K+GLD +  +S  L
Sbjct: 67  FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKL 126

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
              Y   G L  A KVFDE+ ER + +WN MI   +      E   LF RM  E   P+E
Sbjct: 127 FDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNE 186

Query: 221 ITLVSVLGSC--GDLG-DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            T   VL +C  G +  D+V  + +   ++   +  +  + + LID+Y + G +  ARRV
Sbjct: 187 GTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRV 244

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD +  KD  +W AMI+  ++N    EAI LF  M   G+ P       VLSAC  I +L
Sbjct: 245 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 304

Query: 338 DLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISAL 386
           ++G+ +     + G   D +            G++  A  +F +M   + V++N +I+ L
Sbjct: 305 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 364

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           +  G   +A+ LF+RM  +G    P+  T   ++ AC   G +  G++L    ++  G  
Sbjct: 365 SQCGYGEKAMELFKRMHLDG--LEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFA 421

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
             ++    +++LYA+   +  A D+   +  +V+ +VL
Sbjct: 422 SNNKIEGALLNLYAKCADIETALDYF--LETEVENVVL 457


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 266/495 (53%), Gaps = 46/495 (9%)

Query: 110 MKRLGLK-PDNFTYPFVFISCANLLALNHGVS-VHSSVFKIGLDEDDHVSHSLITMYARC 167
           ++R GL  P     P +  S A        V+  H+   + G  +D  V  +L   YA C
Sbjct: 139 LRRAGLPAPGPRALPALLRSAARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAAC 198

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G +   RKVFD +  RD+VSW  M+  Y +    KEA+ LF +M+    +PD++ L +VL
Sbjct: 199 GCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVL 258

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG------------------ 269
            +CG +  L +GK +  +++ + M +  ++ SALI +Y  C                   
Sbjct: 259 PACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLV 318

Query: 270 ---ALVP----------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
              A+V           AR +FD M  KDVV+W+AMI+ Y  +   NEA+ LFN M+  G
Sbjct: 319 SSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECG 378

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDAL 365
           +  D+IT++ V+SACA++G+LD  KW+  +    GL           D+F  CG I+ AL
Sbjct: 379 IRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLAL 438

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            VF +MP+ N ++W +MISA A +G    +L LFE+M  EG  A PN+VTF+ +L AC H
Sbjct: 439 NVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEG--AEPNEVTFLSLLYACCH 496

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AGLV EGR LF  M   +G+ PK EHY CMVDL  RA  + EA   +E M  + +  + G
Sbjct: 497 AGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWG 556

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           +LL AC    +  +     + +L+++ ++ G  V+  KI+      +++ ++R +M+   
Sbjct: 557 SLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHR 616

Query: 546 VSKTPGCSWIGIDDP 560
           VSK  G SW+ +++P
Sbjct: 617 VSKETGLSWMELNEP 631



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 153/298 (51%), Gaps = 3/298 (1%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
            KA   ++  +++   + +   L+SL   C + +  ++++ +M    +     ++     
Sbjct: 270 GKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYAR 329

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
            +    A  +F  +   +  +++ MI G   + Q  + +L L+  M+  G++ D  T   
Sbjct: 330 NRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQP-NEALSLFNGMQECGIRSDEITMLS 388

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           V  +CANL +L+    +H+ +   GL++  H+ ++LI M+A+CG ++ A  VF+E+  ++
Sbjct: 389 VISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKN 448

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-E 243
           +++W SMIS ++  G  K ++ LF +M++E   P+E+T +S+L +C   G +  G+ +  
Sbjct: 449 VITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFS 508

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNG 300
             V +  ++        ++D+ G+   +  A  + ++M +  +V  W +++ A   +G
Sbjct: 509 SMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHG 566


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 279/530 (52%), Gaps = 41/530 (7%)

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           II    FN  S+          + F    R L+T +  + H  +   QM   G       
Sbjct: 193 IIHQGCFNSKSMFL------TRHVFPSNSRTLST-FTTHIHLQQPLLQMALHGFNMKFEN 245

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   C N  A   G  VH+ + K        +   LI +Y +C  L  A  VFDE+ 
Sbjct: 246 YNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMP 305

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELF---------GRMREEEFL------------PDE 220
           ER++VSW +MIS YS+ GYA +A+ LF         G    ++              P+E
Sbjct: 306 ERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNE 365

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T  +VL SC      +LG+ +   ++K   + + ++GS+L+DMY K G +  AR VF+ 
Sbjct: 366 FTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFEC 425

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           +  +DVV+  A+I+ YAQ GL  EA+ LF R++  G+  + +T  GVL+A + + ALDLG
Sbjct: 426 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLG 485

Query: 341 KWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K V  +  +  +           D++  CG++  + ++F+ M     +SWNAM+   + +
Sbjct: 486 KQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKH 545

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS-SFGLIPK 448
           G   E L LF  M +E    +P+ VT + VLS C H GL D+G  +F+ MSS    + PK
Sbjct: 546 GEGREVLKLFTLM-REETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPK 604

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            EHY C+VDL  R+G + EA++F+++MP +    + G+LLGAC+   N D+ +   Q LL
Sbjct: 605 MEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLL 664

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           EIE  N+GNYVI S ++A+   W+D + +R LM +K V+K PG S I +D
Sbjct: 665 EIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELD 714



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 227/471 (48%), Gaps = 61/471 (12%)

Query: 25  EKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQ 77
           E   ++L +C + +     Q++H  M+        FL  R+I L         A  +F +
Sbjct: 244 ENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDE 303

Query: 78  ISRPNEYAFNVMI----------RGLTTAWQKYSHSLKLYYQMKRLGL----------KP 117
           +   N  ++  MI          + L   +     SL   Y + +L L          +P
Sbjct: 304 MPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEP 363

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           + FT+  V  SC + L    G  +HS + K+  ++   V  SL+ MYA+ GK+  AR VF
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF 423

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           + + ERD+VS  ++ISGY+++G  +EA+ELF R++ E    + +T   VL +   L  L 
Sbjct: 424 ECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALD 483

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           LGK V   V+++++     + ++LIDMY KCG L  +RR+FD M  + V++WNAM+  Y+
Sbjct: 484 LGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYS 543

Query: 298 QNGLSNEAIMLFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
           ++G   E + LF  M+    V PD +T++ VLS C+  G  D G           + +D+
Sbjct: 544 KHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKG---------LNIFNDM 594

Query: 357 FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
             G I+   K+           +  ++  L  +GR  EA    ++M  E     P    +
Sbjct: 595 SSGKIEVEPKM---------EHYGCVVDLLGRSGRVEEAFEFIKKMPFE-----PTAAIW 640

Query: 417 IGVLSAC-VHAGL-VDE--GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             +L AC VH+ + + E  G++L ++   + G      +Y  + +LYA AG
Sbjct: 641 GSLLGACRVHSNVDIGEFAGQQLLEIEPGNAG------NYVILSNLYASAG 685


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/463 (35%), Positives = 264/463 (57%), Gaps = 15/463 (3%)

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           QM  LG +     Y  +   C +  A+  G  VH+ + K       ++   LI +Y +C 
Sbjct: 80  QMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCD 139

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
            L  AR++FDE+ ++++VSW +MIS YS+ G+A EA+ LF  M   +  P+  T  ++L 
Sbjct: 140 CLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILT 199

Query: 229 SC-GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
           SC G LG    G+ +    +K   + + ++GS+L+DMY K G +  A  VF  +  +DVV
Sbjct: 200 SCYGSLG-FETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVV 258

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
              A+I+ YAQ GL  EA+ LF +++  G+N + +T   VL+A + + AL+ GK V  + 
Sbjct: 259 ACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHV 318

Query: 348 SQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G            D++  CG++  A ++F+ MP    +SWNAM+   + +G A E L
Sbjct: 319 LRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVL 378

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCM 455
            LF+ M +E    +P+ +T++ VLS C H  L D G  +F ++++   G+ P   HY C+
Sbjct: 379 ELFKLM-REENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCV 437

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
           VDL  RAG + EA+DF+++MP      + G+LLG+C+   + ++   V Q LLE+E  N+
Sbjct: 438 VDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENA 497

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           GNYVI S ++A+   W+D   +R LM+EK V+K PG SW+ +D
Sbjct: 498 GNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELD 540



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 225/462 (48%), Gaps = 42/462 (9%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRP 81
           ++L +C S + +   Q++HT M+        +L  R+I L +       A  +F ++ + 
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQK 154

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI   +     +  +L L+ +M R   +P++FT+  +  SC   L    G  +
Sbjct: 155 NVVSWTAMISAYSQRGFAFE-ALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 213

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS   K   +    V  SL+ MYA+ G++  A  VF  + ERD+V+  ++ISGY++MG  
Sbjct: 214 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLD 273

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA++LF +++ E    + +T  SVL +   L  L  GK V   V+++       + ++L
Sbjct: 274 EEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSL 333

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG +  ARR+FD+M  +  ++WNAM+  Y+++G++ E + LF  M+    V PD
Sbjct: 334 IDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPD 393

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
            IT + VLS C+     D+G              +IF   ++    +  D+       + 
Sbjct: 394 SITYLAVLSGCSHGQLEDMGL-------------EIFYNMVNGKDGIEPDIG-----HYG 435

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL---VDEGRRLF 436
            ++  L   GR  EA    ++M        P    +  +L +C VH+ +   +  G++L 
Sbjct: 436 CVVDLLGRAGRVEEAFDFIKKM-----PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLL 490

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +L   + G      +Y  + +LYA AG   +  +  + M EK
Sbjct: 491 ELEPENAG------NYVILSNLYASAGKWEDMRNIRDLMQEK 526


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 276/513 (53%), Gaps = 16/513 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+   +   D   A L+F ++ R +  ++N MI G           L+L++ M+   +
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN-DVCLEGLRLFFMMREFFV 292

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            PD  T   V  +C  L     G  VH  V K G   +  V++SLI M++  G  D A  
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF ++  +DLVSW +MISGY K G  ++AVE +  M  E  +PDEIT+ SVL +C  LG 
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL 412

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G  +  F  +  +     + ++LIDMY KC  +  A  VF  + NK+V++W ++I  
Sbjct: 413 LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
              N  S EA+  F +M  + + P+ +TL+ VLSACA IGAL  GK +  +A + GL  D
Sbjct: 473 LRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
            F           CG ++ A   F      +  SWN +++  A  G+   A+ LF +M +
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIE 590

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
                 P+++TF  +L AC  +G+V +G   F+ M   F + P  +HY+ +VDL  RAG 
Sbjct: 591 SD--VNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L +A++F+++MP   D  + GALL AC+  +N ++ +   Q + E+++ + G Y++   +
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +A+   WD+ A++R +MRE  ++  PGCSW+ +
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEV 741



 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 253/478 (52%), Gaps = 43/478 (8%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQ---IHTQMLINF----IQKPNFLLIRIIDLKDFNYASL 73
           S+  E  ++LL+ C   +   +   +H+ +        ++  N LL   +   D   A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +++  + +++NV++ G   A   +  +L LY++M  +G++PD +T+P V  +C  L 
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKA-GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLP 209

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  VH  V + G + D  V ++LITMY +CG + SAR VFD +  RD +SWN+MIS
Sbjct: 210 DLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMIS 269

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY +     E + LF  MRE    PD +T+ SV+ +C  LGD  LG+ V G+V+K     
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + ++LI M+   G    A  VF  M  KD+V+W AMI+ Y +NGL  +A+  +  M+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
           + GV PD+IT+  VLSACA +G LD G  + ++A + GL   +            C  ID
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            AL+VF  +P  N +SW ++I  L  N R+ EAL  F++M     + +PN VT + VLSA
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL---SLKPNSVTLVSVLSA 506

Query: 423 CVHAGLVDEGRRL----------FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           C   G +  G+ +          FD      G +P +     ++D+Y R G +  AW+
Sbjct: 507 CARIGALSCGKEIHAHALRTGLGFD------GFLPNA-----LLDMYVRCGRMEPAWN 553


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 184/559 (32%), Positives = 290/559 (51%), Gaps = 24/559 (4%)

Query: 14  FTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-----KDF 68
           +T L++       LL    K  S     Q H+  + + +    F+   ++ L      + 
Sbjct: 53  WTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNL 112

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
             A  +F  +   +  ++  MI G     +K   SL+L+ +M  LG++P+ FT   V  +
Sbjct: 113 FEARRVFDGLFYKDLISWTSMITGYVKV-EKPKKSLELFLEMLGLGIEPNGFTLSAVIKA 171

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C+ L  L  G   H  V   G D +D +S +LI MY R   +D A  VF E+ + D + W
Sbjct: 172 CSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICW 231

Query: 189 NSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
            S+IS +++     +A+  F  M R+    PD  T  +VL +CG+LG L  GK V   V+
Sbjct: 232 TSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVI 291

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
            + +  N ++ S+L+DMYGKC  +  ++ VFD M  K++V+W A++  Y QNG     I 
Sbjct: 292 TSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIR 351

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           +F      G   D  +   VL ACA + A+  GK V     +R    D+           
Sbjct: 352 IFRE----GKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYA 407

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG ID A ++F  M V N ++WN+MI   A NGR  E   LF+ M +EG   RP+ ++F
Sbjct: 408 KCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEG--IRPDYISF 465

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +GVL AC HAGLVD+G++ F  M+  + + P  EHY+CM+DL  RAG L EA + +E   
Sbjct: 466 VGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENAN 525

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + +  +   LLGAC    ++  ++R+ +  +E++  +  +YV  + ++  +  WDD+ K
Sbjct: 526 CRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVK 585

Query: 537 MRALMREKGVSKTPGCSWI 555
           +R LM ++GV K PG SWI
Sbjct: 586 IRNLMTKRGVGKMPGTSWI 604



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 16/311 (5%)

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y K G   EA+ +   +             S+L +C        G       +K+ +D +
Sbjct: 35  YCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTD 94

Query: 255 FYMGSALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
            ++G++L+ +Y K G  L  ARRVFD +  KD+++W +MIT Y +     +++ LF  M 
Sbjct: 95  RFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEML 154

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR-HDIFC----------GSID 362
             G+ P+  TL  V+ AC+ +G L LGK        RG   +D+             ++D
Sbjct: 155 GLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVD 214

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           DA+ VF ++P  + + W ++ISA   N    +AL  F  M ++ G + P+  TF  VL+A
Sbjct: 215 DAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLS-PDGFTFGTVLTA 273

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C + G + +G+ +   + +S GL       S +VD+Y +   ++++    +RM  K + +
Sbjct: 274 CGNLGRLKQGKEVHAKVITS-GLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVK-NLV 331

Query: 483 VLGALLGA-CQ 492
              ALLG  CQ
Sbjct: 332 SWTALLGGYCQ 342


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/556 (31%), Positives = 297/556 (53%), Gaps = 29/556 (5%)

Query: 15  TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
            EL   SL RE   +LLK C S   +Q              N LL+        + A  +
Sbjct: 278 AELGLLSLGRELHAALLK-CGSELNIQ-------------CNALLVMYAKYGRVDSALRV 323

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F QI+  +  ++N M+         Y+ ++  + +M + G +PD+     +  +  +L  
Sbjct: 324 FGQIAEKDYISWNSMLSCYVQN-SFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSR 382

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           LN+G   H+   K  L  D  V ++L+ MY +CG ++ + KVF+ +  RD +SW ++++ 
Sbjct: 383 LNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILAC 442

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +++     EA+E+   +++E  + D + + S+L +C  L  + L K V  + ++N + L+
Sbjct: 443 FAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LD 501

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             + + LID+YG+CG    +  +F  +  KD+V+W +MI     NG  N A+ LF  M+ 
Sbjct: 502 LILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQK 561

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR---------HDIF--CGSIDD 363
           A + PD + L+ +L A A + +L  GK V  +  +R             D++  CGS++ 
Sbjct: 562 ANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNY 621

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A++VFE     + V W AMI+A   +G   +A+ LF+RM + G    P+ V+F+ +L AC
Sbjct: 622 AIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTG--LTPDHVSFLALLYAC 679

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H+ LV+EG+   D+M S + L P  EHY+C+VD+  R+G   EA++F++ MP      V
Sbjct: 680 SHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAV 739

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             ALLGAC+  +N  ++      LLE+E  N GNY++ S +FA +  W+++ + R  M E
Sbjct: 740 WCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAE 799

Query: 544 KGVSKTPGCSWIGIDD 559
           +G+ K P CSWI I +
Sbjct: 800 RGLRKNPACSWIEIGN 815



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 224/418 (53%), Gaps = 21/418 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+  M+  G   +++T   V   CA L  L+ G  +H+++ K G  E +   ++L+ 
Sbjct: 251 ALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCG-SELNIQCNALLV 309

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+ G++DSA +VF +I E+D +SWNSM+S Y +  +  EA++ FG M +  F PD   
Sbjct: 310 MYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHAC 369

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +VS+  + G L  L  G+    + +K ++  +  +G+ L+DMY KCG++  + +VF++M 
Sbjct: 370 VVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMG 429

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +D ++W  ++  +AQ+   +EA+ +   ++  G+  D + +  +L  C  + ++ L K 
Sbjct: 430 IRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQ 489

Query: 343 VDKYASQRGLRH--------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
           V  YA + GL          DI+  CG  D +L +F+ +   + VSW +MI+    NGR 
Sbjct: 490 VHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRL 549

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEH 451
           + A+ LF  M K     +P+ V  + +L A      + +G+++   L+  +F +  +   
Sbjct: 550 NGAVFLFTEMQKAN--IQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPI--EGPV 605

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC----QKQKNTDVSQRVMQ 505
            S +VD+Y+  G ++ A    ER   K D ++  A++ A       ++  D+ +R++Q
Sbjct: 606 VSSLVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHGHGKQAIDLFKRMLQ 662



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 199/392 (50%), Gaps = 25/392 (6%)

Query: 138 GVSVHSSVFKIG-LDEDDH--VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           G  VH+     G L+EDD   ++  L+ MY RCG++D AR++F+ +  R + SWN+++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 195 YSKMGYAKEAVELFGRMREEEF---LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           Y   G A EA+ ++G MR        PD  TL SVL +CG  GD   G  V G  VK  +
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLF 309
           D +  + +ALI MY KCG L  A RVF+ +    +DV +WN++++   QNG + EA+ LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC----------G 359
             M+ AG   +  T + VL  CA +G L LG+ +     + G   +I C          G
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYG 315

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D AL+VF  +   + +SWN+M+S    N    EA+  F  M + G   +P+    + +
Sbjct: 316 RVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHG--FQPDHACVVSL 373

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
            SA  H   ++ GR  F   +    L    +  + ++D+Y + G +  +    E M  + 
Sbjct: 374 SSALGHLSRLNNGRE-FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR- 431

Query: 480 DEIVLGALLGAC--QKQKNTDVSQRVMQLLLE 509
           D I    +L AC  Q  ++++  + +++L  E
Sbjct: 432 DHISWTTIL-ACFAQSSRHSEALEMILELQKE 462


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 178/550 (32%), Positives = 301/550 (54%), Gaps = 30/550 (5%)

Query: 36  STKTVQQIHTQML-INFIQKPNFLLIRIIDLKDF----NYASLLFHQISRPNEYAFNVMI 90
           S K  QQ H ++L + F Q P FL  ++I           + L+F  +   + Y +N +I
Sbjct: 42  SLKLTQQCHARILSLGFTQNP-FLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLI 100

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
            G     + Y+ +   +YQM   G+  D++T   +   C  +  LN G  +H    K G 
Sbjct: 101 NGFVKN-RAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGF 159

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG---YAKEAVEL 207
             D  V++SL++MY++CG      K+FDE+ ER++ SWN ++SGY+  G   + KE    
Sbjct: 160 VLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGF 219

Query: 208 FGRMREEEFLPDEITLVSVLGSC-GDLGDLVLGKWVEGFVVKNKMDLN----FYMGSALI 262
              M+ E   PD  T+ S+L  C G +G    G+ + GF+V+ ++ +      ++G  LI
Sbjct: 220 VKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLI 279

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDK 321
           DMY +   +   RRVFD M  ++V  W AMI  + QNG   E ++LF+ M+   GV P+K
Sbjct: 280 DMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNK 339

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           ++L+ VL AC+++  L   K +  YA ++   +D+            CGS+D A +VFE 
Sbjct: 340 VSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEF 399

Query: 371 MPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
                + +SW++MIS    +G+  EA+ ++ +M + G   +P+ +T +GVLSAC  AGLV
Sbjct: 400 GSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGN--KPDMITIVGVLSACSRAGLV 457

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           DEG  ++    + + + P  E  +C+VD+  R+G L +A D+++ MP +    V GA++ 
Sbjct: 458 DEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVS 517

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           A     N+++     + L+++E  N  NYV  S + A+ + WD  +++R +M+++ ++KT
Sbjct: 518 ASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKT 577

Query: 550 PGCSWIGIDD 559
           PGCSWI I++
Sbjct: 578 PGCSWISINN 587


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 254/473 (53%), Gaps = 13/473 (2%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           +S +++ QM+   + P+ +TYP +  +C  L  L  G  +HS + K     + +V   LI
Sbjct: 433 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 492

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MYA+ GKLD+A  +      +D+VSW +MI+GY++  +  +A+  F +M +     DE+
Sbjct: 493 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 552

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            L + + +C  L  L  G+ +      +    +    +AL+ +Y +CG +  +   F+  
Sbjct: 553 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 612

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
              D + WNA+++ + Q+G + EA+ +F RM   G++ +  T    + A +    +  GK
Sbjct: 613 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGK 672

Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            V    ++ G   +             CGSI DA K F ++   NEVSWNA+I+A + +G
Sbjct: 673 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 732

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              EAL  F++M       RPN VT +GVLSAC H GLVD+G   F+ M+S +GL PK E
Sbjct: 733 FGSEALDSFDQMIHSN--VRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE 790

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY C+VD+  RAG LS A +F++ MP K D +V   LL AC   KN ++ +     LLE+
Sbjct: 791 HYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL 850

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
           E  +S  YV+ S ++A  K WD     R  M+EKGV K PG SWI + +   S
Sbjct: 851 EPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 903



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 242/483 (50%), Gaps = 20/483 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQISRPN 82
           +LS  KK  S +  +Q+H  +L + F       N L+     L +   A  +F  +S+ +
Sbjct: 254 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 313

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              +N +I GL+        +++L+ +M   GL+PD+ T   + ++C+    L  G  +H
Sbjct: 314 AVTYNTLINGLSQCGYG-EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH 372

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           +   K+G   ++ +  +L+ +YA+C  +++A   F E    ++V WN M+  Y  +   +
Sbjct: 373 AYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR 432

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
            +  +F +M+ EE +P++ T  S+L +C  LGDL LG+ +   ++K    LN Y+ S LI
Sbjct: 433 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 492

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY K G L  A  +      KDVV+W  MI  Y Q    ++A+  F +M   G+  D++
Sbjct: 493 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 552

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDM 371
            L   +SACA + AL  G+ +   A   G   D+            CG I+++   FE  
Sbjct: 553 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 612

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + ++WNA++S    +G   EAL +F RM++EG     N+ TF   + A      + +
Sbjct: 613 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG--IDNNNFTFGSAVKAASETANMKQ 670

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G+++  +++ + G   ++E  + ++ +YA+ G +S+A      +  K +E+   A++ A 
Sbjct: 671 GKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAY 728

Query: 492 QKQ 494
            K 
Sbjct: 729 SKH 731



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 240/514 (46%), Gaps = 25/514 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
           V+QIH ++L   ++    +   +IDL   N     A  +F  +   +  ++  MI GL+ 
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 225

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
             +  + +++L+  M  LG+ P  + +  V  +C  + +L  G  +H  V K+G   D +
Sbjct: 226 N-ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 284

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++L+++Y   G L SA  +F  + +RD V++N++I+G S+ GY ++A+ELF RM  + 
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 344

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  TL S++ +C   G L  G+ +  +  K     N  +  AL+++Y KC  +  A 
Sbjct: 345 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 404

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
             F     ++VV WN M+ AY        +  +F +M+   + P++ T   +L  C  +G
Sbjct: 405 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 464

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
            L+LG+ +     +   + + +            G +D A  +       + VSW  MI+
Sbjct: 465 DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 524

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
                    +AL  F +M   G   R ++V     +SAC     + EG+++      S G
Sbjct: 525 GYTQYNFDDKALTTFRQMLDRG--IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-G 581

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
                   + +V LY+R G + E++   E+  E  D I   AL+   Q+  N + + RV 
Sbjct: 582 FSSDLPFQNALVTLYSRCGKIEESYLAFEQ-TEAGDNIAWNALVSGFQQSGNNEEALRVF 640

Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            + +  E  ++ N+   S +    K   ++A M+
Sbjct: 641 -VRMNREGIDNNNFTFGSAV----KAASETANMK 669



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 192/377 (50%), Gaps = 21/377 (5%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRP 81
           S+LK C     ++   QIH+Q++    Q   ++   +ID    L   + A  +  + +  
Sbjct: 455 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 514

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  MI G T  +     +L  + QM   G++ D         +CA L AL  G  +
Sbjct: 515 DVVSWTTMIAGYTQ-YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 573

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+     G   D    ++L+T+Y+RCGK++ +   F++    D ++WN+++SG+ + G  
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +EA+ +F RM  E    +  T  S + +  +  ++  GK V   + K   D    + +AL
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 693

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I MY KCG++  A + F  +  K+ V+WNA+I AY+++G  +EA+  F++M ++ V P+ 
Sbjct: 694 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 753

Query: 322 ITLIGVLSACASIGALDLG-KWVDKYASQRGLR---HDIFC--------GSIDDALKVFE 369
           +TL+GVLSAC+ IG +D G  + +   S+ GL        C        G +  A +  +
Sbjct: 754 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 813

Query: 370 DMPVT-NEVSWNAMISA 385
           +MP+  + + W  ++SA
Sbjct: 814 EMPIKPDALVWRTLLSA 830



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 195/398 (48%), Gaps = 28/398 (7%)

Query: 108 YQMKRL------GLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           +Q KR+      G++P++ T  ++   C     +L+ G  +HS + K+GLD +  +S  L
Sbjct: 27  FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKL 86

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
              Y   G L  A KVFDE+ ER + +WN MI   +      E   LF RM  E   P+E
Sbjct: 87  FDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNE 146

Query: 221 ITLVSVLGSC--GDLG-DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
            T   VL +C  G +  D+V  + +   ++   +  +  + + LID+Y + G +  ARRV
Sbjct: 147 GTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRV 204

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD +  KD  +W AMI+  ++N    EAI LF  M   G+ P       VLSAC  I +L
Sbjct: 205 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 264

Query: 338 DLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISAL 386
           ++G+ +     + G   D +            G++  A  +F +M   + V++N +I+ L
Sbjct: 265 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 324

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           +  G   +A+ LF+RM  +G    P+  T   ++ AC   G +  G++L    ++  G  
Sbjct: 325 SQCGYGEKAMELFKRMHLDG--LEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFA 381

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
             ++    +++LYA+   +  A D+   +  +V+ +VL
Sbjct: 382 SNNKIEGALLNLYAKCADIETALDYF--LETEVENVVL 417


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 182/517 (35%), Positives = 275/517 (53%), Gaps = 73/517 (14%)

Query: 110 MKRLGLKPDNFTY-PFVFI----SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164
           M  L  +P+  +Y P + +    +C ++  L     VH+ + K G   D+ ++  ++ + 
Sbjct: 1   MNALMFQPNTASYYPRLDVPQIKACKSMRELKQ---VHAFLVKTGQTHDNAIATEILRLS 57

Query: 165 ARCGKLD--SARKVFDEIRERDLVSWNSMISGYSKMGYAK-EAVELFGRMREEEFL-PDE 220
           A     D   A  VFD++ ER+  +WN++I   ++      +A+ +F +M  E  + P++
Sbjct: 58  ATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQ 117

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEG-----------FVVKNKM------------------ 251
            T  SVL +C  +  L  GK V G           FVV N +                  
Sbjct: 118 FTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYR 177

Query: 252 ------------------DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
                             + N  + + ++D Y + G L  AR +FD M  + VV+WN MI
Sbjct: 178 NVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMI 237

Query: 294 TAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           + YAQNG   EAI +F+RM   G V P+++TL+ VL A + +G L+LGKWV  YA +  +
Sbjct: 238 SGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKI 297

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           R D             CGSI+ A++VFE +P  N ++WNA+I  LA +G+A++      R
Sbjct: 298 RIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSR 357

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M K G    P+DVT+I +LSAC HAGLVDEGR  F+ M +S GL PK EHY CMVDL  R
Sbjct: 358 MEKCG--ISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGR 415

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG+L EA + +  MP K D+++  ALLGA +  KN  +  R  ++L+++   +SG YV  
Sbjct: 416 AGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVAL 475

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S ++A+   WD  A +R +M++  + K PGCSWI ID
Sbjct: 476 SNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEID 512



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 220/423 (52%), Gaps = 68/423 (16%)

Query: 31  LKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLFHQISRPNEY 84
           +K C S + ++Q+H  ++       N +   I+      D +D  YA  +F Q+   N +
Sbjct: 22  IKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCF 81

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           A+N +IR L     ++  +L ++ QM     ++P+ FT+P V  +CA +  L  G  VH 
Sbjct: 82  AWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHG 141

Query: 144 SVFKIGLDEDDHVSHSLITM---------------------------------------- 163
            + K GL +D+ V  +L+ M                                        
Sbjct: 142 LLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVL 201

Query: 164 -------YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE-EE 215
                  YAR G L +AR++FD + +R +VSWN MISGY++ G+ KEA+E+F RM +  +
Sbjct: 202 CNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGD 261

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
            LP+ +TLVSVL +   LG L LGKWV  +  KNK+ ++  +GSAL+DMY KCG++  A 
Sbjct: 262 VLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAI 321

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +VF+ +   +V+TWNA+I   A +G +N+     +RM+  G++P  +T I +LSAC+  G
Sbjct: 322 QVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAG 381

Query: 336 ALDLGK-WVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPV-TNEVSWNAM 382
            +D G+ + +   +  GL+  I             G +++A ++  +MP+  ++V W A+
Sbjct: 382 LVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKAL 441

Query: 383 ISA 385
           + A
Sbjct: 442 LGA 444


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 255/455 (56%), Gaps = 13/455 (2%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G + D  T   V  + A L  L  G+ +     K G      +   LI+++++CG+++ A
Sbjct: 26  GPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIA 85

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R +F EIR++DL+S N+MISG++  G  +++V LF  +          T+V ++      
Sbjct: 86  RLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPF 145

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           G   L   + GF VK  +  +  + +AL  +Y +   ++ AR++FD    K + +WNAMI
Sbjct: 146 GHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMI 205

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           +   QNGL++ AI LF  M+   VNP+ +T+  +LSACA IGAL LG+WV          
Sbjct: 206 SGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFE 265

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            +++           CGSI  A ++F+ MP  NEV+WNAMIS    +G   EAL LF  M
Sbjct: 266 SNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDM 325

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
                + +P  +TF+ VL AC HAGLV EG  +F  M   FG  P +EHY+CMVD+  RA
Sbjct: 326 LSS--SVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRA 383

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L +A +F++ MP +    V GALLGAC   K+T+++    + L E++  N G YV+ S
Sbjct: 384 GQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMS 443

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            I++  + +  +A +R + ++K ++KTPGC+ I I
Sbjct: 444 NIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEI 478



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 178/357 (49%), Gaps = 30/357 (8%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY---- 122
           +   A LLF +I + +  + N MI G T   +    S++L+ ++   G +  + T     
Sbjct: 81  EVEIARLLFGEIRKKDLISCNAMISGFTCNGET-EDSVRLFKELLSSGERVSSSTIVGLI 139

Query: 123 ----PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD 178
               PF      N +   HG  V     K+G+     VS +L T+Y R  ++  AR++FD
Sbjct: 140 PVYSPFGHSYLCNCI---HGFCV-----KLGIVSHSSVSTALTTVYCRLNEMIFARQLFD 191

Query: 179 EIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           E  E+ L SWN+MISG ++ G    A+ LF  M++    P+ +T+ S+L +C  +G L L
Sbjct: 192 ESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSL 251

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G+WV   +  N+ + N Y+ +ALIDMY KCG++  AR +FD M  K+ VTWNAMI+ Y  
Sbjct: 252 GEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGL 311

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV----------DKYAS 348
           +G   EA+ LF  M  + V P  +T + VL AC+  G +  G  +          +  A 
Sbjct: 312 HGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAE 371

Query: 349 QRGLRHDIF--CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
                 DI    G +  AL+  + MPV      W A++ A   +   + A +  E++
Sbjct: 372 HYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKL 428



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 156/315 (49%), Gaps = 26/315 (8%)

Query: 191 MISGYSKMGYAKEAVELFGRM---REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           MISG+ K    ++++ +FG M       F  D  T+++VL +  +L +L LG  +    +
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRF--DLTTVIAVLPAVAELQELKLGMQILCLAI 58

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K     +  + + LI ++ KCG +  AR +F  +  KD+++ NAMI+ +  NG + +++ 
Sbjct: 59  KCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVR 118

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL-RHD--------IFC 358
           LF  +  +G      T++G++   +  G   L   +  +  + G+  H         ++C
Sbjct: 119 LFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYC 178

Query: 359 --GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
               +  A ++F++       SWNAMIS    NG    A+ LF+ M K      PN VT 
Sbjct: 179 RLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNN--VNPNPVTV 236

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSS-FGLIPKSEHY--SCMVDLYARAGHLSEAWDFVE 473
             +LSAC   G +  G  +  L+ S+ F    +S  Y  + ++D+YA+ G ++ A +  +
Sbjct: 237 TSILSACAQIGALSLGEWVHSLIKSNRF----ESNVYVSTALIDMYAKCGSITVARELFD 292

Query: 474 RMPEKVDEIVLGALL 488
            MPEK +E+   A++
Sbjct: 293 LMPEK-NEVTWNAMI 306


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/407 (41%), Positives = 237/407 (58%), Gaps = 14/407 (3%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI MY + G L  A+ VFD++ +R++VSW +MIS YS      +A+E    M  E   P+
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
             T  SVL +C  L +L   + +   ++K  +D + ++ SALID+Y + G L  A RVFD
Sbjct: 66  MFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            MV  D+V W+++I  +AQN   +EA+ LF RMK AG    + TL  VL AC  +  L+L
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 340 GKWVD----KYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           G+ V     KY     L + +      CGS++DA  VF  M   + +SW+ MI+ LA NG
Sbjct: 183 GRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNG 242

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            + EAL LFE M   G   +PN VT +GVL AC HAGLV+EG   F  M   FG+ P  E
Sbjct: 243 YSKEALKLFESMKVLG--IKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY CM+DL  RAG LSEA D +  M  + D +   ALL AC+  +N DV+    + +L +
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRL 360

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +  ++G YV+ S I+AN + W+D A++R  M  +G+ K PGCSWI +
Sbjct: 361 DPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEV 407



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 191/356 (53%), Gaps = 31/356 (8%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F ++   N  ++  MI   + A +    +L+    M R G++P+ FTY  V  +C 
Sbjct: 19  AQDVFDKMPDRNVVSWTTMISAYSAA-KLNDKALEFLVLMLREGVRPNMFTYSSVLRACD 77

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  L     +H  + KIGLD D  V  +LI +Y+R G+L++A +VFDE+   DLV W+S
Sbjct: 78  GLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSS 134

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+G+++     EA+ LF RM+   FL  + TL SVL +C  L  L LG+ V   V+K  
Sbjct: 135 IIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYD 194

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            DL   + +AL+DMY KCG+L  A  VF  MV KDV++W+ MI   AQNG S EA+ LF 
Sbjct: 195 QDL--ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFE 252

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370
            MK  G+ P+ +T++GVL AC+  G ++ G +   + S + L        ID   +    
Sbjct: 253 SMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYY--FHSMKEL------FGIDPGRE---- 300

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VH 425
                   +  MI  L   GR  EA+ L   M  E     P+ VT+  +L+AC VH
Sbjct: 301 -------HYGCMIDLLGRAGRLSEAVDLINEMECE-----PDAVTWRALLNACRVH 344



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 21/235 (8%)

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           ++ + LI+MY K G L  A+ VFD M +++VV+W  MI+AY+   L+++A+     M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDA 364
           GV P+  T   VL AC  +  L   + +     + GL  D+F            G +++A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           L+VF++M   + V W+++I+  A N    EAL LF+RM + G  A+    T   VL AC 
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQT--TLTSVLRACT 175

Query: 425 HAGLVDEGRRL-FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              L++ GR++   ++     LI      + ++D+Y + G L +A     RM EK
Sbjct: 176 GLALLELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDANAVFVRMVEK 226


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 178/516 (34%), Positives = 286/516 (55%), Gaps = 23/516 (4%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+   +     + A  +F  +   N  ++  MI  +      YS S+KL+  M   G+
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGH-YSFSVKLFDGMIAEGI 346

Query: 116 KPDNFTYPFVFISCANL---LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
            P+  TY  V  + A+L     L+ G  +HS +   G+D D  V +SLI MYAR G L  
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 173 ARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           AR+VFD I E  + +VS+ +MIS Y+  G+ ++A+E+F  M      P+EIT  +VL +C
Sbjct: 407 AREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAAC 466

Query: 231 GDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
             +GDL  G W+   ++++ +D  + +  ++L+DMY KCG L  A RVF+ M  KD+V W
Sbjct: 467 VAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAW 526

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
             +I A  Q+G +  A+ L++RM  +G++PD  TL  +L ACA++G L +G+ + + A +
Sbjct: 527 TTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALR 586

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
             L  D             CGS++ A +++     ++  +W +M++A +  G A  AL L
Sbjct: 587 SKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALEL 646

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           +  M  EG   RPN+VTFI VL +C  AGLV EGR  F  ++S +G  P +EH+ CMVD+
Sbjct: 647 YAEMESEG--VRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDV 704

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             RAG L +A + ++ MP   DEI   +LL +C+   + ++  R  + LLE++  ++  +
Sbjct: 705 LGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPESTSQF 764

Query: 519 VISSKIFANLKMWDDSAKMR---ALMREKGVSKTPG 551
           V  S+I+A      D  +++   AL R+  V +T G
Sbjct: 765 VALSQIYAAAGRNSDIDEIKRELALRRQIEVHRTTG 800



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 26/375 (6%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++LI+MY RCGKLD A +VF ++  R++VSW SMI+  ++ G+   +V+LF  M  E 
Sbjct: 286 VLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEG 345

Query: 216 FLPDEITLVSVLGSCGDLG-DLVL--GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
             P+E T  SV+ +   LG D +L  G+ +   +  + +D +  + ++LI+MY + G L 
Sbjct: 346 INPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLA 405

Query: 273 PARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
            AR VFD+++  +K VV++  MI+AYA NG   +A+ +F  M   GV P++IT   VL+A
Sbjct: 406 EAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAA 465

Query: 331 CASIGALDLGKWVDKYASQRGL-RHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           C +IG L  G W+ +   + GL   D F           CG +  A +VFE M   + V+
Sbjct: 466 CVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVA 525

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W  +I+A   +G    AL L++RM + G    P+  T   +L AC + G +  G ++   
Sbjct: 526 WTTIIAANVQSGNNRAALDLYDRMLQSG--IHPDIATLSTLLVACANLGDLAMGEKIHRQ 583

Query: 439 MSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
              S   + +  H+ + +  +YA+ G L +A     R     D     ++L A  +Q   
Sbjct: 584 ALRS--KLEQDAHFQNALAAMYAKCGSLEKATRLYRRC-RGSDVATWTSMLAAHSQQGLA 640

Query: 498 DVSQRVMQLLLEIES 512
            V+   ++L  E+ES
Sbjct: 641 SVA---LELYAEMES 652



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 248/505 (49%), Gaps = 36/505 (7%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISR 80
           +LL++C + + +   +++H  ++   + + N LL  ++       + F+ A  LF  +  
Sbjct: 55  NLLRQCGNQRALDHGRRVHAHIVSRRLAR-NALLGELVFQMYARCRCFDTAIALFDAMPD 113

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              + +NV+++    A  +   +L+LY +M     +P    + +  ++C  +  L  G S
Sbjct: 114 RRPFCWNVLMKEFLAA-DRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRS 172

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V   G   +  +  +L+TMYA+CG++D A   FD+ RE     WN+++S  +  G+
Sbjct: 173 IHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGH 231

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            + A+ELF +M  E+    + +    LG+C   G L  G  +   +          + +A
Sbjct: 232 HRRAIELFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNA 289

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LI MY +CG L  A RVF  M +++VV+W +MI A AQ G  + ++ LF+ M   G+NP+
Sbjct: 290 LISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPN 349

Query: 321 KITLIGVLSACASIGA---LDLGKWVDKYASQRGLRHDIFC-----------GSIDDALK 366
           + T   V+SA A +G    LD G+ +    +  G+  D              G + +A +
Sbjct: 350 EKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEARE 409

Query: 367 VFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           VF+ +   ++  VS+  MISA A NG   +AL +F  M+  G A  PN++TF  VL+ACV
Sbjct: 410 VFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVA--PNEITFATVLAACV 467

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
             G +  G  + + M  S         Y+ +VD+YA+ G L  A    E M  K D +  
Sbjct: 468 AIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTK-DLVAW 526

Query: 485 GALLGACQKQKNT----DVSQRVMQ 505
             ++ A  +  N     D+  R++Q
Sbjct: 527 TTIIAANVQSGNNRAALDLYDRMLQ 551



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 184/375 (49%), Gaps = 18/375 (4%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   C N  AL+HG  VH+ +    L  +  +   +  MYARC   D+A  +FD + 
Sbjct: 53  YANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMP 112

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R    WN ++  +      ++ +EL+ RM  E   P     +  + +CG + DL  G+ 
Sbjct: 113 DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRS 172

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +  + V     +N  + SAL+ MY +CG +  A   FD         WNA+++A A  G 
Sbjct: 173 IH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGH 231

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF--- 357
              AI LF +M+    + D+   I + +  A+       +  DK  S+  G R  +    
Sbjct: 232 HRRAIELFFQMEQHQCS-DRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNAL 290

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG +D+AL+VF DMP  N VSW +MI+A+A  G    ++ LF+ M  EG    P
Sbjct: 291 ISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEG--INP 348

Query: 412 NDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           N+ T+  V+SA  H G   ++D GR++   +++S G+       + ++++YAR+G L+EA
Sbjct: 349 NEKTYASVVSAIAHLGRDAILDRGRKIHSQITAS-GIDADPIVQNSLINMYARSGLLAEA 407

Query: 469 WDFVERMPEKVDEIV 483
            +  + + E    +V
Sbjct: 408 REVFDSILENSKTVV 422


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 264/469 (56%), Gaps = 15/469 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           SL L+ +M   G+KP++FT+     +C  L  L+ G  +H    K G D  + V +S+I 
Sbjct: 57  SLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIID 116

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY++CG+++ A  +F+ +  R+L+SWN+MI+GY+  G+ ++A+ LF +M+E     DE T
Sbjct: 117 MYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFT 176

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGSALIDMYGKCGALVPARRVFDA 280
             S L +C DLG +  G  +  F++       +N  +  ALID+Y KCG L  ARRVF  
Sbjct: 177 FTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSH 236

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           +  K V++W A+I  YAQ G   E++ LF +++ + +  D   L  ++   A    +  G
Sbjct: 237 IEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG 296

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K +  +A +     DI            CG I++A ++F +MP  N +SW  MI+    +
Sbjct: 297 KQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKH 356

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G   EA+ LF+ M  +  +  P+DVT++ VL  C H+GLV++G+  F  + S  G+  + 
Sbjct: 357 GLGKEAIRLFDEMQLD--STEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARV 414

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+CMVDL  RAG L EA + V+ MP + +  +   LL AC+   + ++ + V  +LL 
Sbjct: 415 EHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLR 474

Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++S N  NYV+ S I+A+   W +  ++R L++ K + K  G SW+ ID
Sbjct: 475 LDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEID 523



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 217/449 (48%), Gaps = 45/449 (10%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +QIH   +       N +   IID+       N A+ +F  +   N  ++N MI G T A
Sbjct: 93  RQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVA 152

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL--DEDD 154
                 +L L+ +M+ +G   D FT+     +C++L A+  G  +H+ +   G     + 
Sbjct: 153 -GFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNT 211

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
            V+ +LI +Y +CGKL  AR+VF  I E+ ++SW ++I GY++ G   E++ELF ++RE 
Sbjct: 212 AVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRES 271

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
               D   L S++G   D   +  GK +  F +K    ++  + ++++DMY KCG +  A
Sbjct: 272 SIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEA 331

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            R+F  M  ++V++W  MIT Y ++GL  EAI LF+ M+     PD +T + VL  C+  
Sbjct: 332 ERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHS 391

Query: 335 GALDLGK-WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
           G ++ G+ +  +  S  G++  +                      +  M+  L   GR  
Sbjct: 392 GLVEKGQEYFSRLCSYHGIKARV--------------------EHYACMVDLLGRAGRLK 431

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE--- 450
           EA  L + M  E      N   +  +LSAC   G ++ G+ +  ++     L   SE   
Sbjct: 432 EAKNLVDSMPLE-----ANVGIWQTLLSACRVHGDLELGKEVGGIL-----LRLDSENPV 481

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           +Y  M ++YA AG+    W   ER+ E V
Sbjct: 482 NYVMMSNIYADAGY----WKECERIRELV 506



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 24/348 (6%)

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
           +G   D  +S+ LI MY +CG+L  A  VFD + +R++VSW +++ G+ + G   E++ L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           F +M      P++ T  + L +CG L  L +G+ +    VK   D+   +G+++IDMY K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           CG +  A  +F+ M  +++++WNAMI  Y   G   +A++LF +M+  G   D+ T    
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 328 LSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFEDMPVT 374
           L AC+ +GA+  G  +  +    G  +           D++  CG +  A +VF  +   
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           + +SW A+I   A  G   E++ LF ++ +   + + +      ++       LV +G++
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRES--SIQVDGFILSSMMGVFADFALVQQGKQ 298

Query: 435 LFDLMSSSFGL-IPKSEHYSC---MVDLYARAGHLSEAWDFVERMPEK 478
           +      +F + +P     S    ++D+Y + G ++EA      MP +
Sbjct: 299 M-----HAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR 341


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 178/456 (39%), Positives = 262/456 (57%), Gaps = 33/456 (7%)

Query: 129 CANLLALN--HGVSVHSSVFKIGLDEDDHVSHSLITMYARCG-----KLDSARKVFDEI- 180
           C +L AL   H V+V +     GL         L+T+    G      L  AR+VFD I 
Sbjct: 38  CTSLRALAQLHAVAVKAGG---GLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIP 94

Query: 181 RERDLVSWNSMISGYSKMGY----AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
              D+V +N+++ GY++ G+    A+EA  +F RM EE   PD  T VS+L +C      
Sbjct: 95  HPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASARAG 154

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
             G+   G  VK     + Y+   LI+MY +CG +  AR +FD M  + VV++NAMITA 
Sbjct: 155 EEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITAS 214

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            ++ L  EA++LF  M+  G+ P  +TLI VLSACA +GAL+LG+W+  Y   R +R D 
Sbjct: 215 VRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYI--RKMRLDS 272

Query: 357 F-------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
                         CGS++DA+ VF+DM   ++ +W+ M+ A A +G   EA+ +FE M 
Sbjct: 273 LVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMK 332

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K+G   +P+DVTF+GVL AC H+G+V EG + FD M   +G++   +HY C+ DL AR+G
Sbjct: 333 KQG--MKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSG 389

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L  A+ F++ +P K   I+   LL AC    + D+ +RV + +LE++ S+ G+YVI S 
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + AN   W++   +R LM EKGV K PGCS I ID+
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDN 485



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 206/403 (51%), Gaps = 27/403 (6%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLI--NFIQKPNFLLIRIIDL---------KDFNYASLLF 75
           LL+ L  C S + + Q+H   +     +Q     + R++ L             YA  +F
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 76  HQISRPNEYA-FNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            +I  P +   +N ++RG             + +++ +M   G+ PD +T+  +  +CA+
Sbjct: 91  DRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACAS 150

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
             A   G   H    K G  E ++V+ +LI MYA CG + +AR +FD +    +VS+N+M
Sbjct: 151 ARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+   +     EA+ LF  M+ +   P  +TL+SVL +C  LG L LG+W+  ++ K ++
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           D    + +ALIDMY KCG+L  A  VF  M ++D   W+ M+ AYA +G   EAI +F  
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEE 330

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLG-KWVD---KYASQRGLRH-----DIFC--GS 360
           MK  G+ PD +T +GVL AC+  G +  G ++ D   +Y    G++H     D+    G 
Sbjct: 331 MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQ 390

Query: 361 IDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
           ++ A K  +++P+    + W  ++SA A +G       +FER+
Sbjct: 391 LERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERI 433


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 269/453 (59%), Gaps = 15/453 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L  D+     VF + ++  ++++  ++H+ V K     D  +   L++MY + G  + A+
Sbjct: 136 LLADSIVQSLVF-AISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQ 194

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDEITLVSVLGSCGDL 233
           ++FDE+  RDLVSWNS++SG S  GY    +  F RMR E    P+E+TL+SV+ +C  +
Sbjct: 195 RLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXM 254

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           G L  GK + G VVK  M     + ++LI+MYGK G L  A ++F+ M  + +V+WN+M+
Sbjct: 255 GALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMV 314

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
             +  NG + + + LFN MK AG+NPD+ T++ +L AC   G     + +  Y  + G  
Sbjct: 315 VIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFN 374

Query: 354 HDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            DI             G ++ +  +FE++   + ++W AM++  A +    EA+ LF+ M
Sbjct: 375 ADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLM 434

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            KEG     + VTF  +LSAC H+GLV+EG++ F++MS  + + P+ +HYSCMVDL  R+
Sbjct: 435 VKEG--VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRS 492

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L +A++ ++ MP +    V GALLGAC+   N ++ + V + LL ++ S+  NY++ S
Sbjct: 493 GRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLS 552

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            I++   +W  ++K+R LM+E+ +++ PGCS+I
Sbjct: 553 NIYSAAGLWRXASKVRXLMKERRLTRNPGCSFI 585



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 225/464 (48%), Gaps = 50/464 (10%)

Query: 16  ELNDPSLLREKLLSLL----KKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK-DFNY 70
           +L++ SLL + ++  L      C S      IH +++ +      F+  R++ +     Y
Sbjct: 130 KLHNSSLLADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGY 189

Query: 71  ---ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVF 126
              A  LF ++   +  ++N ++ GL+         L  + +M+   G +P+  T   V 
Sbjct: 190 DEDAQRLFDEMPNRDLVSWNSLMSGLS-GRGYLGACLNAFCRMRTESGRQPNEVTLLSVV 248

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +CA + AL+ G S+H  V K+G+     V +SLI MY + G LD+A ++F+E+  R LV
Sbjct: 249 SACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLV 308

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNSM+  ++  GYA++ ++LF  M+     PD+ T+V++L +C D G     + +  ++
Sbjct: 309 SWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI 368

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +   + +  + +AL+++Y K G L  +  +F+ + ++D + W AM+  YA +    EAI
Sbjct: 369 HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAI 428

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALK 366
            LF+ M   GV  D +T   +LSAC+  G ++ GK                        K
Sbjct: 429 KLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK------------------------K 464

Query: 367 VFEDMPVTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            FE M     V      ++ M+  L  +GR  +A  L + M  E     P+   +  +L 
Sbjct: 465 YFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME-----PSSGVWGALLG 519

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEH--YSCMVDLYARAG 463
           AC   G V+ G+ + + + S    +  S+H  Y  + ++Y+ AG
Sbjct: 520 ACRVYGNVELGKEVAEQLLS----LDPSDHRNYIMLSNIYSAAG 559


>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71490-like [Brachypodium distachyon]
          Length = 692

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/500 (34%), Positives = 269/500 (53%), Gaps = 48/500 (9%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           H+L  Y QM R  + PD FTYP V  +CA    L  G +VH      G+       ++L+
Sbjct: 145 HALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLHGLATGVGGHLFFQNALV 204

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
           +MYA+ G L +ARKVF+ + ++D+VSWNSMIS Y  +G   +AVELF RMR EE   + +
Sbjct: 205 SMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQAVELFERMRAEEAEVNSV 264

Query: 222 TLVSVLG-----------------------------------SCGDLGDLVLGKWVEGFV 246
           T  ++ G                                   +C  +G L LGK + G  
Sbjct: 265 TWNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSNACSRVGWLRLGKEIHGLA 324

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           V+   D    + +ALI MY +C  +  A  +F  +    VVTWN MI ++A +  + EA 
Sbjct: 325 VRMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTWNTMIASFALSDEAEEAS 384

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF 357
            L + M  AGV P+ +T++ +L+ CA +  L  G+ +  +  + G +          D++
Sbjct: 385 RLVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHIVKNGFKGYRLLWNSLIDMY 444

Query: 358 C--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
              G +  A  VF+ M   + +S+  MI+     G+   AL LF++M   G   +P+ ++
Sbjct: 445 SKSGXLSVAQNVFDTMDDRDMISYTXMIAGYGMQGKGTIALRLFDQMIDSG--IKPDHIS 502

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            + VLSAC H+GLV EG +LFD M+SS+G+ P+ EHYSCMVDLYAR+G L +A   +   
Sbjct: 503 MVTVLSACSHSGLVTEGEKLFDKMTSSYGIKPQMEHYSCMVDLYARSGLLEKAEGMLNES 562

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
                 ++  AL+GAC  + N  + +R  + LLE+++ N+G+YV+ + ++A    WD+ A
Sbjct: 563 SSPPTSMMWAALVGACHDRGNIIIGERAARRLLEMKTENAGHYVLIANMYAAAGCWDELA 622

Query: 536 KMRALMREKGVSKTPGCSWI 555
            +R LMR+ GV+K PG +W+
Sbjct: 623 TVRKLMRDLGVTKAPGLAWV 642



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 185/386 (47%), Gaps = 40/386 (10%)

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           I G+    + +  ++ L  +M   G   D  T      +C+ +  L  G  +H    ++ 
Sbjct: 269 IAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSNACSRVGWLRLGKEIHGLAVRMN 328

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
            D  + V+++LITMYARC  +DSA  +F  +    +V+WN+MI+ ++    A+EA  L  
Sbjct: 329 CDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTWNTMIASFALSDEAEEASRLVH 388

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
            M      P+ +T+V++L  C  + +L  G+ +   +VKN       + ++LIDMY K G
Sbjct: 389 EMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHIVKNGFKGYRLLWNSLIDMYSKSG 448

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            L  A+ VFD M ++D++++  MI  Y   G    A+ LF++M  +G+ PD I+++ VLS
Sbjct: 449 XLSVAQNVFDTMDDRDMISYTXMIAGYGMQGKGTIALRLFDQMIDSGIKPDHISMVTVLS 508

Query: 330 ACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           AC+  G +  G K  DK  S  G++  +                      ++ M+   A 
Sbjct: 509 ACSHSGLVTEGEKLFDKMTSSYGIKPQM--------------------EHYSCMVDLYAR 548

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG----RRLFDLMSSSFG 444
           +G   +A    E M  E  ++ P  + +  ++ AC   G +  G    RRL ++ + + G
Sbjct: 549 SGLLEKA----EGMLNE-SSSPPTSMMWAALVGACHDRGNIIIGERAARRLLEMKTENAG 603

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWD 470
                 HY  + ++YA AG     WD
Sbjct: 604 ------HYVLIANMYAAAG----CWD 619



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 50/370 (13%)

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           + +N +IS   + G+ + A+  + +M     LPD  T  SVL +C + GDL LG+ V   
Sbjct: 128 LPYNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLH 187

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +   +  + +  +AL+ MY K G LV AR+VF+ M  KDVV+WN+MI+AY   G   +A
Sbjct: 188 GLATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQA 247

Query: 306 IMLFNRMKYA-----------------------------------GVNPDKITLIGVLSA 330
           + LF RM+                                     G   D +TL+   +A
Sbjct: 248 VELFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLIREMVSDGAAVDFVTLVIGSNA 307

Query: 331 CASIGALDLGKWVDKYASQRG-----------LRHDIFCGSIDDALKVFEDMPVTNEVSW 379
           C+ +G L LGK +   A +             +     C  +D A  +F+ +     V+W
Sbjct: 308 CSRVGWLRLGKEIHGLAVRMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTW 367

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           N MI++ A +  A EA  L   M   G   +PN VT + +L+ C     +  G+ L   +
Sbjct: 368 NTMIASFALSDEAEEASRLVHEMV--GAGVQPNYVTVVTLLALCARVANLQHGQELHSHI 425

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
             + G       ++ ++D+Y+++G LS A +  + M ++ D I    ++     Q    +
Sbjct: 426 VKN-GFKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMDDR-DMISYTXMIAGYGMQGKGTI 483

Query: 500 SQRVMQLLLE 509
           + R+   +++
Sbjct: 484 ALRLFDQMID 493


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 276/513 (53%), Gaps = 16/513 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+   +   D   A L+F ++ R +  ++N MI G           L+L++ M+   +
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN-DVCLEGLRLFFMMREFFV 292

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            PD  T   V  +C  L     G  VH  V K G   +  V++SLI M++  G  D A  
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF ++  +DLVSW +MISGY K G  ++AVE +  M  E  +PDEIT+ SVL +C  LG 
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL 412

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G  +  F  +  +     + ++LIDMY KC  +  A  VF  + NK+V++W ++I  
Sbjct: 413 LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
              N  S EA+  F +M  + + P+ +TL+ VLSACA IGAL  GK +  +A + GL  D
Sbjct: 473 LRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
            F           CG ++ A   F      +  SWN +++  A  G+   A+ LF +M +
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIE 590

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
                 P+++TF  +L AC  +G+V +G   F+ M   F + P  +HY+ +VDL  RAG 
Sbjct: 591 SD--VNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L +A++F+++MP   D  + GALL AC+  +N ++ +   Q + E+++ + G Y++   +
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +A+   WD+ A++R +MRE  ++  PGCSW+ +
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEV 741



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 253/478 (52%), Gaps = 43/478 (8%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQ---IHTQMLINF----IQKPNFLLIRIIDLKDFNYASL 73
           S+  E  ++LL+ C   +   +   +H+ +        ++  N LL   +   D   A  
Sbjct: 91  SVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWY 150

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +++  + +++NV++ G   A   +  +L LY++M  +G++PD +T+P V  +C  L 
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKA-GYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLP 209

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  VH  V + G + D  V ++LITMY +CG + SAR VFD +  RD +SWN+MIS
Sbjct: 210 DLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMIS 269

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY +     E + LF  MRE    PD +T+ SV+ +C  LGD  LG+ V G+V+K     
Sbjct: 270 GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVA 329

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + ++LI M+   G    A  VF  M  KD+V+W AMI+ Y +NGL  +A+  +  M+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME 389

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
           + GV PD+IT+  VLSACA +G LD G  + ++A + GL   +            C  ID
Sbjct: 390 HEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCID 449

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            AL+VF  +P  N +SW ++I  L  N R+ EAL  F++M     + +PN VT + VLSA
Sbjct: 450 KALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL---SLKPNSVTLVSVLSA 506

Query: 423 CVHAGLVDEGRRL----------FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           C   G +  G+ +          FD      G +P +     ++D+Y R G +  AW+
Sbjct: 507 CARIGALSCGKEIHAHALRTGLGFD------GFLPNA-----LLDMYVRCGRMEPAWN 553


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 269/468 (57%), Gaps = 15/468 (3%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
            +++ +M    L PD+FT+  +    A L ++     VH       L  D  V+ +++++
Sbjct: 211 FRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSL 270

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y++   L  ARK+FD++ E+D V WN MI+ Y++ G   E +ELF  M       D  T 
Sbjct: 271 YSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTA 330

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
           + V+ S   L  +  GK     +++N  D    + ++LIDMY +C  L  A ++F+ M +
Sbjct: 331 LPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTD 390

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           K V++W+AMI  Y +NG S  A+ LF++MK  G+  D + +I +L A   IGAL+  K++
Sbjct: 391 KSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYL 450

Query: 344 DKYASQRGLRH-----------DIFCGSIDDALKVFEDMPVTNE--VSWNAMISALAFNG 390
             Y+ + GL                CGSI+ A ++FE+  + ++  + WN+MISA A +G
Sbjct: 451 HGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHG 510

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              +   L+ RM  +   ++P+ VTF+G+L+ACV++GLV++G+  F  M+ S+G  P  E
Sbjct: 511 DWSQCFKLYNRM--KCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQE 568

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+CMV+L  RAG +SEA + V+ MP K D  V G LL AC+    + +++   + L+ +
Sbjct: 569 HYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINM 628

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           E  N+GNY++ S I+A    WD  AKMR+ +R KG+ K PGCSW+ I+
Sbjct: 629 EPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEIN 676



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 150/485 (30%), Positives = 241/485 (49%), Gaps = 28/485 (5%)

Query: 17  LNDP---SLLREKLLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIID----LKDF 68
           LN P   S L   L  L  +C S + +QQIH + +++ F Q P  L  ++ID    L   
Sbjct: 17  LNFPATQSRLLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPT-LSSKLIDCYANLGLL 75

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           N++  +F  +  PN   FN ++R LT  + +   +L +Y QM    + PD  TYPFV  S
Sbjct: 76  NHSLQVFCSVIDPNLTLFNAILRNLTR-YGESERTLLVYQQMVAKSMHPDEETYPFVLRS 134

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C++   +  G ++H  + K+G D  D V+ +L  MY  C + ++A ++FD+   +DL  W
Sbjct: 135 CSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKDL-GW 193

Query: 189 NSMISGYSKMGYAKEAV-ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
            S ++         E +  +FGRM  E+ +PD  T  ++L     L  + L K V    +
Sbjct: 194 PSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAI 253

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
            +K+  +  + +A++ +Y K  +LV AR++FD M  KD V WN MI AYA+ G   E + 
Sbjct: 254 VSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLE 313

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFC 358
           LF  M  +G+  D  T + V+S+ A +  +D GK    +  + G            D++C
Sbjct: 314 LFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYC 373

Query: 359 GS--IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
               +D A K+F  M   + +SW+AMI     NG++  AL LF +M  +G  A  + V  
Sbjct: 374 ECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQA--DFVIM 431

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           I +L A VH G ++  + L    S   GL       + ++  YA+ G +  A    E   
Sbjct: 432 INILPAFVHIGALENVKYLHG-YSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE-- 488

Query: 477 EKVDE 481
           EK+D+
Sbjct: 489 EKIDD 493



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 179/330 (54%), Gaps = 16/330 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +   +N+MI        K +  L+L+  M R G++ D FT   V  S A
Sbjct: 280 ARKLFDKMPEKDRVVWNIMIAAYARE-GKPTECLELFKSMARSGIRSDLFTALPVISSIA 338

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  ++ G   H+ + + G D    V +SLI MY  C  LDSA K+F+ + ++ ++SW++
Sbjct: 339 QLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSA 398

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY K G +  A+ LF +M+ +    D + ++++L +   +G L   K++ G+ +K  
Sbjct: 399 MIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLG 458

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVF--DAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           +     + +AL+  Y KCG++  A+R+F  + + +KD++ WN+MI+A+A +G  ++   L
Sbjct: 459 LTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKL 518

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHDIF------ 357
           +NRMK +   PD++T +G+L+AC + G ++ GK       + Y  Q    H         
Sbjct: 519 YNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLG 578

Query: 358 -CGSIDDALKVFEDMPVTNEVS-WNAMISA 385
             G I +A ++ ++MP+  +   W  ++SA
Sbjct: 579 RAGLISEAGELVKNMPIKPDARVWGPLLSA 608


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 275/516 (53%), Gaps = 15/516 (2%)

Query: 56   NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
            N L+   +     + A  +F Q++  +  ++N MI G   +  +   S+ ++  + R GL
Sbjct: 945  NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEEC-SVGMFVDLLRGGL 1003

Query: 116  KPDNFTYPFVFISCANLLALNH-GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
             PD FT   V  +C++L    H    +H+   K G+  D  VS +LI +Y++ GK++ A 
Sbjct: 1004 LPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAE 1063

Query: 175  KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
             +F      DL SWN+M+ GY   G   +A+ L+  M+E     ++ITL +   + G L 
Sbjct: 1064 FLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLV 1123

Query: 235  DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
             L  GK ++  VVK   +L+ ++ S ++DMY KCG +  ARR+F+ + + D V W  MI+
Sbjct: 1124 GLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMIS 1183

Query: 295  AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
               +NG    A+  ++ M+ + V PD+ T   ++ AC+ + AL+ G+ +     +     
Sbjct: 1184 GCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAF 1243

Query: 355  DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            D F           CG+I+DA  +F+    +   SWNAMI  LA +G A EAL  FE M 
Sbjct: 1244 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMK 1303

Query: 404  KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
              G    P+ VTFIGVLSAC H+GLV E    F  M   +G+ P+ EHYSC+VD  +RAG
Sbjct: 1304 SRG--VTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAG 1361

Query: 464  HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
             + EA   +  MP +    +   LL AC+ Q + +  +RV + LL +E S+S  YV+ S 
Sbjct: 1362 RIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSN 1421

Query: 524  IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++A    W++ A  R +MR+  V K PG SW+ + +
Sbjct: 1422 VYAAANQWENVASARNMMRKANVKKDPGFSWVDLKN 1457



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 189/373 (50%), Gaps = 23/373 (6%)

Query: 118  DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
            D  T+  +    A L  L  G  +H  V + GLD+   V + LI MY + G +  AR VF
Sbjct: 905  DGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVF 964

Query: 178  DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL-GDL 236
             ++ E DLVSWN+MISG +  G  + +V +F  +     LPD+ T+ SVL +C  L G  
Sbjct: 965  WQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGC 1024

Query: 237  VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
             L   +    +K  + L+ ++ + LID+Y K G +  A  +F      D+ +WNAM+  Y
Sbjct: 1025 HLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGY 1084

Query: 297  AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
              +G   +A+ L+  M+ +G   ++ITL     A   +  L  GK +     +RG   D+
Sbjct: 1085 IVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDL 1144

Query: 357  F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE--RMS 403
            F           CG ++ A ++F ++P  ++V+W  MIS    NG+   AL  +   R+S
Sbjct: 1145 FVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLS 1204

Query: 404  KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYAR 461
            K     +P++ TF  ++ AC     +++GR++    +++  L    + +  + +VD+YA+
Sbjct: 1205 K----VQPDEYTFATLVKACSLLTALEQGRQIH---ANTVKLNCAFDPFVMTSLVDMYAK 1257

Query: 462  AGHLSEAWDFVER 474
             G++ +A    +R
Sbjct: 1258 CGNIEDARGLFKR 1270



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 184/385 (47%), Gaps = 30/385 (7%)

Query: 22   LLREKLL-------SLLKKCPS----TKTVQQIHTQMLINFIQKPNFLLIRIIDL----K 66
            LLR  LL       S+L+ C S         QIH   +   +   +F+   +ID+     
Sbjct: 998  LLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSG 1057

Query: 67   DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
                A  LF      +  ++N M+ G   +   +  +L+LY  M+  G + +  T     
Sbjct: 1058 KMEEAEFLFVNQDGFDLASWNAMMHGYIVSGD-FPKALRLYILMQESGERANQITLANAA 1116

Query: 127  ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             +   L+ L  G  + + V K G + D  V   ++ MY +CG+++SAR++F+EI   D V
Sbjct: 1117 KAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDV 1176

Query: 187  SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
            +W +MISG  + G  + A+  +  MR  +  PDE T  +++ +C  L  L  G+ +    
Sbjct: 1177 AWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANT 1236

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            VK     + ++ ++L+DMY KCG +  AR +F       + +WNAMI   AQ+G + EA+
Sbjct: 1237 VKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEAL 1296

Query: 307  MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--GLRHDI-------- 356
              F  MK  GV PD++T IGVLSAC+  G +    + + Y+ Q+  G+  +I        
Sbjct: 1297 QFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEA-YENFYSMQKIYGIEPEIEHYSCLVD 1355

Query: 357  ---FCGSIDDALKVFEDMPVTNEVS 378
                 G I +A KV   MP     S
Sbjct: 1356 ALSRAGRIREAEKVISSMPFEASAS 1380



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 170/356 (47%), Gaps = 20/356 (5%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGY 195
           G   H+ +   G   D  ++++LITMY++CG L SARK+FD   +  RDLV+WN+++S +
Sbjct: 645 GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
           +    A++   LF  +R         TL  V   C         + + G+ VK  +  + 
Sbjct: 705 ADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDV 762

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           ++  AL+++Y K G +  AR +FD M  +DVV WN M+ AY   GL  EA++LF+     
Sbjct: 763 FVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRT 822

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTN 375
           G+ PD +TL  +     S    ++ +W  K     G +  ++    D           ++
Sbjct: 823 GLRPDDVTLCTLARVVKS--KQNVLEWQLKQLKAYGTKLFMYDDDDDG----------SD 870

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            ++WN  +S     G   EA+  F  M     A   + +TF+ +LS       ++ G+++
Sbjct: 871 VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVAC--DGLTFVVMLSVVAGLNCLELGKQI 928

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
             ++  S GL       +C++++Y + G +S A     +M E VD +    ++  C
Sbjct: 929 HGIVVRS-GLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNE-VDLVSWNTMISGC 982



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 192/435 (44%), Gaps = 44/435 (10%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A +LF  +   +   +NVM++       +Y  +L L+ +  R GL+PD+ T         
Sbjct: 781  ARVLFDGMGLRDVVLWNVMMKAYVDTGLEY-EALLLFSEFNRTGLRPDDVT--------- 830

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
             L  L   V    +V +  L +       L  MY              +    D+++WN 
Sbjct: 831  -LCTLARVVKSKQNVLEWQLKQLKAYGTKLF-MYDD------------DDDGSDVIAWNK 876

Query: 191  MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
             +S + + G   EAV+ F  M       D +T V +L     L  L LGK + G VV++ 
Sbjct: 877  TLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSG 936

Query: 251  MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            +D    +G+ LI+MY K G++  AR VF  M   D+V+WN MI+  A +GL   ++ +F 
Sbjct: 937  LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFV 996

Query: 311  RMKYAGVNPDKITLIGVLSACASI-GALDLGKWVDKYASQRGLRHDIFC----------- 358
             +   G+ PD+ T+  VL AC+S+ G   L   +   A + G+  D F            
Sbjct: 997  DLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKS 1056

Query: 359  GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
            G +++A  +F +    +  SWNAM+     +G   +AL L+  M + G   R N +T   
Sbjct: 1057 GKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG--ERANQITLAN 1114

Query: 419  VLSACVHAGLV--DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
               A    GLV   +G+++  ++    G        S ++D+Y + G +  A      +P
Sbjct: 1115 AAKAA--GGLVGLKQGKQIQAVVVKR-GFNLDLFVISGVLDMYLKCGEMESARRIFNEIP 1171

Query: 477  EKVDEIVLGALLGAC 491
               D++    ++  C
Sbjct: 1172 SP-DDVAWTTMISGC 1185



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 167/390 (42%), Gaps = 42/390 (10%)

Query: 93   LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
            L+    K      L+  ++R  +     T   VF  C    + +   S+H    KIGL  
Sbjct: 701  LSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQW 760

Query: 153  DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
            D  V+ +L+ +YA+ G++  AR +FD +  RD+V WN M+  Y   G   EA+ LF    
Sbjct: 761  DVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFN 820

Query: 213  EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
                 PD++TL ++                   VVK+K ++  +    L   YG      
Sbjct: 821  RTGLRPDDVTLCTL-----------------ARVVKSKQNVLEWQLKQL-KAYGT----- 857

Query: 273  PARRVF---DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
               ++F   D     DV+ WN  ++ + Q G + EA+  F  M  + V  D +T + +LS
Sbjct: 858  ---KLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLS 914

Query: 330  ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
              A +  L+LGK +     + GL   +             GS+  A  VF  M   + VS
Sbjct: 915  VVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVS 974

Query: 379  WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
            WN MIS  A +G    ++ +F  + +  G   P+  T   VL AC   G           
Sbjct: 975  WNTMISGCALSGLEECSVGMFVDLLR--GGLLPDQFTVASVLRACSSLGGGCHLATQIHA 1032

Query: 439  MSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             +   G++  S   + ++D+Y+++G + EA
Sbjct: 1033 CAMKAGVVLDSFVSTTLIDVYSKSGKMEEA 1062



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 17/195 (8%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM--VNKDVVTWNAM 292
           DL LGK     ++ +    + ++ + LI MY KCG+L  AR++FD     ++D+VTWNA+
Sbjct: 641 DLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAI 700

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           ++A+A    + +   LF  ++ + V+  + TL  V   C    +    + +  YA + GL
Sbjct: 701 LSAHADK--ARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGL 758

Query: 353 RHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           + D+F            G I +A  +F+ M + + V WN M+ A    G  +EALLLF  
Sbjct: 759 QWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSE 818

Query: 402 MSKEGGAARPNDVTF 416
            ++ G   RP+DVT 
Sbjct: 819 FNRTG--LRPDDVTL 831


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 153/401 (38%), Positives = 235/401 (58%), Gaps = 13/401 (3%)

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           +  A  +FD+I + D+V +N+M  GY++      A  LF ++      PD+ T  S+L +
Sbjct: 71  MQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKA 130

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C     L  G+ +    +K  +  N Y+   LI+MY  C  +  ARRVFD +    VVT+
Sbjct: 131 CASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY 190

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           NAMIT YA+    NEA+ LF  ++   + P  +T++ VLS+CA +GALDLGKW+ +Y  +
Sbjct: 191 NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKK 250

Query: 350 RGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            G            D++  CGS+DDA+ VFE+M V +  +W+AMI A A +G   +A+ L
Sbjct: 251 NGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSL 310

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F+ M K G    P+++TF+G+L AC H GLV+EG   F  M   +G+IP  +HY CMVDL
Sbjct: 311 FKEMRKAG--TEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDL 368

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             RAG L EA++F+  +P +   I+   LL AC    N ++ +RV++ + E++ S+ G+Y
Sbjct: 369 LGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDY 428

Query: 519 VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +I S + A    W+D   +R LM E+GV K PGCS + +++
Sbjct: 429 IILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNN 469



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 153/452 (33%), Positives = 231/452 (51%), Gaps = 52/452 (11%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN-------YASLLFHQISR 80
           LSLL KC S + ++Q+    +   +     +L + I+    N       +A  LF QI +
Sbjct: 24  LSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQ 83

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+   FN M RG          +  L+ Q+   GL PD++T+P +  +CA+  AL  G  
Sbjct: 84  PDIVLFNTMARGYARTDTPL-RAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQ 142

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K+GL E+ +V  +LI MY  C ++D AR+VFD+I E  +V++N+MI+GY++   
Sbjct: 143 LHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             EA+ LF  ++     P ++T++SVL SC  LG L LGKW+  +V KN  +    + +A
Sbjct: 203 PNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTA 262

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LIDMY KCG+L  A  VF+ M  +D   W+AMI AYA +G   +A+ LF  M+ AG  PD
Sbjct: 263 LIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPD 322

Query: 321 KITLIGVLSACASIGALDLG-----KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTN 375
           +IT +G+L AC+  G ++ G        DKY    G++H                     
Sbjct: 323 EITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKH--------------------- 361

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR- 434
              +  M+  L   GR  EA   +E +   G   RP  + +  +LSAC   G V+ G+R 
Sbjct: 362 ---YGCMVDLLGRAGRLEEA---YEFIV--GLPIRPTPILWRTLLSACGSHGNVELGKRV 413

Query: 435 ---LFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
              +F+L  S  G       Y  + +L ARAG
Sbjct: 414 IEQIFELDDSHGG------DYIILSNLCARAG 439


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 253/453 (55%), Gaps = 14/453 (3%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P+ + +  V   CA+   +  G   H  + K GL    +V ++LI MY+RC  +DSA ++
Sbjct: 126 PNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQI 185

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
            D +   D+ S+NS++S   + G   EA ++  RM +E  + D +T VSVLG C  + DL
Sbjct: 186 LDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDL 245

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
            LG  +   ++K  +  + ++ S LID YGKCG ++ AR+ FD + +++VV W A++TAY
Sbjct: 246 QLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAY 305

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            QNG   E + LF +M+     P++ T   +L+ACAS+ AL  G  +       G ++ +
Sbjct: 306 LQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHL 365

Query: 357 FC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                        G+ID +  VF +M   + ++WNAMI   + +G   +ALL+F+ M   
Sbjct: 366 IVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSA 425

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G    PN VTFIGVLSACVH  LV EG   FD +   F + P  EHY+CMV L  RAG L
Sbjct: 426 GEC--PNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLL 483

Query: 466 SEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
            EA +F++   + K D +    LL AC   +N ++ +++ + +++++  + G Y + S +
Sbjct: 484 DEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNM 543

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            A  + WD   K+R LM+E+ + K PG SW+ I
Sbjct: 544 HAKARKWDGVVKIRKLMKERNIKKEPGASWLDI 576


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 164/523 (31%), Positives = 277/523 (52%), Gaps = 21/523 (4%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK---YSHSLKLY 107
           F+   N LL    +++  + A +LF +I   +   FN +I G    ++K   Y+ S+ L+
Sbjct: 183 FLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITG----YEKDGLYTESIHLF 238

Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
            +M++ G +P +FT+  V  +   L     G  +H+     G   D  V + ++  Y++ 
Sbjct: 239 LKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKH 298

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
            ++   R +FDE+ E D VS+N +IS YS+    + ++  F  M+   F        ++L
Sbjct: 299 DRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATML 358

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
               +L  L +G+ +    +    D   ++G++L+DMY KC     A  +F ++  +  V
Sbjct: 359 SIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTV 418

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W A+I+ Y Q GL    + LF +M+ + +  D+ T   VL A AS  +L LGK +  + 
Sbjct: 419 SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFI 478

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G   ++F           CGSI DA++VFE+MP  N VSWNA+ISA A NG    A+
Sbjct: 479 IRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAI 538

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
             F +M + G   +P+ V+ +GVL+AC H G V++G   F  MS  +G+ PK +HY+CM+
Sbjct: 539 GAFAKMIESG--LQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACML 596

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES-SNS 515
           DL  R G  +EA   ++ MP + DEI+  ++L AC+  KN  +++R  + L  +E   ++
Sbjct: 597 DLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDA 656

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
             YV  S I+A    W+    ++  MRE+G+ K P  SW+ ++
Sbjct: 657 AAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVN 699



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 194/406 (47%), Gaps = 19/406 (4%)

Query: 100 YSHSLKLYYQMKRLG--LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH-- 155
           +  + KL+ QM R      PD+ T+  +   C + +  N    VH+   K+G D +    
Sbjct: 126 FDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLT 185

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           VS+ L+  Y    +LD A  +F+EI E+D V++N++I+GY K G   E++ LF +MR+  
Sbjct: 186 VSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P + T   VL +   L D  LG+ +    V      +  +G+ ++D Y K   ++  R
Sbjct: 246 HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +FD M   D V++N +I++Y+Q      ++  F  M+  G +        +LS  A++ 
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS 365

Query: 336 ALDLGKWVDKY---ASQRGLRH------DIF--CGSIDDALKVFEDMPVTNEVSWNAMIS 384
           +L +G+ +      A+   + H      D++  C   ++A  +F+ +P    VSW A+IS
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
                G     L LF +M   G   R +  TF  VL A      +  G++L   +  S G
Sbjct: 426 GYVQKGLHGAGLKLFTKM--RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRS-G 482

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            +      S +VD+YA+ G + +A    E MP++ + +   AL+ A
Sbjct: 483 NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISA 527



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 177/401 (44%), Gaps = 53/401 (13%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           V + + K G D D   S+ ++    R G++ +ARKV+DE+  ++ VS N+MISG+ K G 
Sbjct: 35  VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94

Query: 201 AKEAVELFGRM----------------REEEF-----------------LPDEITLVSVL 227
              A +LF  M                R   F                 LPD +T  ++L
Sbjct: 95  VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYM--GSALIDMYGKCGALVPARRVFDAMVNKD 285
             C D         V  F VK   D N ++   + L+  Y +   L  A  +F+ +  KD
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
            VT+N +IT Y ++GL  E+I LF +M+ +G  P   T  GVL A   +    LG+ +  
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274

Query: 346 YASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
            +   G   D   G+           + +   +F++MP  + VS+N +IS+ +     +E
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYS-QADQYE 333

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF--DLMSSSFGLIPKSEHY 452
           A L F R  +  G  R N   F  +LS   +   +  GR+L    L++++  ++      
Sbjct: 334 ASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVG--- 389

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           + +VD+YA+     EA    + +P++        + G  QK
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQK 430


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 175/538 (32%), Positives = 283/538 (52%), Gaps = 33/538 (6%)

Query: 41  QQIHTQML-INF---IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           Q++H +++ I F   +   NFL+   + +     A  +F ++   +  ++N M+ G    
Sbjct: 144 QKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQID 203

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
               S SL  + +M RLG K D F       +C+    L  G+ +H  V +  L+ D  V
Sbjct: 204 GDGLS-SLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMV 262

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SLI MY +CGK+D A +VF+ I  +++V+WN+MI G  +               +++ 
Sbjct: 263 QTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE---------------DDKV 307

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           +PD IT++++L SC   G L+ GK + GF ++        + +AL+DMYGKCG L  A  
Sbjct: 308 IPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEH 367

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VF+ M  K++V+WN M+ AY QN    EA+ +F  +    + PD IT+  VL A A + +
Sbjct: 368 VFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELAS 427

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
              GK +  Y  + GL  + F           CG +  A + F+ M   + VSWN MI A
Sbjct: 428 RSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMA 487

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A +G    ++  F  M   G   +PN  TF+ +L+AC  +GL+DEG   F+ M   +G+
Sbjct: 488 YAIHGFGRTSIQFFSEM--RGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGI 545

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P  EHY CM+DL  R G+L EA  F+E MP      + G+LL A +   +  +++   +
Sbjct: 546 DPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAAR 605

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
            +L ++  N+G YV+ S ++A    W+D  +++ LM+E+G+ KT GCS + I+   +S
Sbjct: 606 HILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSES 663



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 154/480 (32%), Positives = 241/480 (50%), Gaps = 40/480 (8%)

Query: 13  AFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYAS 72
           A  E N P    +      +K P  K  Q   ++     + +PN L I   DL  F  + 
Sbjct: 17  ASPEQNKPPKAAQFKRKTTRKSPFIKRAQ---SKTSFKPLARPNDLNI-TRDLCGFVESG 72

Query: 73  LL------FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           L+      F +++  + + +NV+IRG T     +  ++  YY+M+  G++ DNFT+PFV 
Sbjct: 73  LMGNALDMFEKMNHSDTFIWNVIIRGYTNNGL-FQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +C  LLAL  G  VH  + KIG D D +V + LI MY + G ++ A KVFDE+  RDLV
Sbjct: 132 KACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLV 191

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           SWNSM+SGY   G    ++  F  M       D   ++S LG+C     L  G  +   V
Sbjct: 192 SWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQV 251

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           ++++++L+  + ++LIDMYGKCG +  A RVF+ + +K++V WNAMI    ++       
Sbjct: 252 IRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDD------ 305

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF 357
                     V PD IT+I +L +C+  GAL  GK +  +A ++             D++
Sbjct: 306 ---------KVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMY 356

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG +  A  VF  M   N VSWN M++A   N +  EAL +F+ +  E    +P+ +T
Sbjct: 357 GKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNE--PLKPDAIT 414

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
              VL A        EG+++   +    GL   +   + +V +YA+ G L  A +F + M
Sbjct: 415 IASVLPAVAELASRSEGKQIHSYI-MKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGM 473



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 150/553 (27%), Positives = 262/553 (47%), Gaps = 68/553 (12%)

Query: 24  REKLLSLLKKCP---STKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           R  ++S L  C      ++  +IH Q++ + ++    +   +ID+       +YA  +F+
Sbjct: 225 RFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFN 284

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           +I   N  A+N MI G+    +                + PD  T   +  SC+   AL 
Sbjct: 285 RIYSKNIVAWNAMIGGMQEDDK----------------VIPDVITMINLLPSCSQSGALL 328

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G S+H    +        +  +L+ MY +CG+L  A  VF+++ E+++VSWN+M++ Y 
Sbjct: 329 EGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYV 388

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +    KEA+++F  +  E   PD IT+ SVL +  +L     GK +  +++K  +  N +
Sbjct: 389 QNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTF 448

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + +A++ MY KCG L  AR  FD MV KDVV+WN MI AYA +G    +I  F+ M+  G
Sbjct: 449 ISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKG 508

Query: 317 VNPDKITLIGVLSACASIGALDLGKW-----------VDKYASQRGLRHDIFC--GSIDD 363
             P+  T + +L+AC+  G +D G W           +D      G   D+    G++D+
Sbjct: 509 FKPNGSTFVSLLTACSISGLIDEG-WGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDE 567

Query: 364 ALKVFEDMP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           A    E+MP V     W ++++A     R H  ++L E  ++   + + ++     +LS 
Sbjct: 568 AKCFIEEMPLVPTARIWGSLLAA----SRNHNDVVLAELAARHILSLKHDNTGCYVLLSN 623

Query: 423 C-VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC-MVDLYARA----------GHLSEAWD 470
               AG  ++  R+  LM    GL+   +   C MVD+  R+           H +  +D
Sbjct: 624 MYAEAGRWEDVDRIKYLMKEQ-GLV---KTVGCSMVDINGRSESFINQDRSHAHTNLIYD 679

Query: 471 FVERMPEKVDE-IVLGAL-----LGACQKQKNTDVSQRV-MQLLLEIESSNSGNYVISSK 523
            ++ + +K+ E I L +L     L   +K+ N+     V + +   + S+  GN VI  K
Sbjct: 680 VLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRK 739

Query: 524 IFANLKMWDDSAK 536
              N ++ DD  +
Sbjct: 740 ---NTRICDDCHR 749


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 305/569 (53%), Gaps = 23/569 (4%)

Query: 8   YSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD 67
           + RHL+       S L +   S+L+K    K +QQIH Q++ + +    FL   +++   
Sbjct: 8   FYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNA-- 65

Query: 68  FNYASLL------FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           + Y  LL      FH     N  ++ ++I GL      +  ++ ++ +M     KP+  T
Sbjct: 66  YVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKN-DCFVEAIDVFREMIMGNFKPNAVT 124

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
              V  + ANL  +    SVH    + G + +  V  +L+ MY++ G +  AR++F+ + 
Sbjct: 125 ISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMS 184

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER++V+WN+++SGYS  G+++EA++LF  MR +  L D  T++S++ +   +G L +G  
Sbjct: 185 ERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG 244

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + GF+++   + + ++ +AL+D+Y     +  A RVF  M  KDV  W  M+T ++    
Sbjct: 245 IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRH 304

Query: 302 SNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            + AI  FN+M     +  D I L+G+LS+C+  GAL  G+ V   A +    ++IF   
Sbjct: 305 WDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGS 364

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG+++DA + F  M   + V WNAMI+    NG   +A+ LF +M  +G   
Sbjct: 365 AVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQM--KGSGL 422

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            P++ TF+ VL AC HAG+V EG ++F  M  +  +IP  +HY+C++D+  RAG L  A+
Sbjct: 423 DPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAY 482

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
            F+  MP + D  V   LLGAC+   N  +   + Q + E+E +++G YV+ S ++A   
Sbjct: 483 SFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAG 542

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGID 558
            W+     RA +R K + K PG S I I+
Sbjct: 543 NWEGVKMTRASLRSKRMKKDPGFSSIEIN 571


>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 176/565 (31%), Positives = 298/565 (52%), Gaps = 22/565 (3%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID--LK 66
           S++L F   +D +    KLLSLL+ C  T  + QIH  M+   +    F L +++   + 
Sbjct: 17  SKNLYFAISSDQA----KLLSLLESCNGTSKISQIHCYMVKTALDLDPFTLSKLLASAIL 72

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D  YA+ +F +I  PN + FN M+RG + +      +  ++  ++     PD F++    
Sbjct: 73  DIKYAASIFREIRNPNLFMFNTMLRGYSNS-NDSKQAFVIFNDLRNQDFLPDRFSFITTL 131

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DL 185
            +CA  LA++ G  +H  V K G    + V++ L+  Y  C ++  A K+FDEI +R DL
Sbjct: 132 KACARELAIHVGKGIHGIVHKSGHGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDL 191

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSWN+++ GY +       ++ F +M     + +  TL+SV  + GD+G+ + G+ + G 
Sbjct: 192 VSWNTLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGH 251

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K  +  N  + + LIDMYGK G L  A  +F+ +  KDV+ WN +I  YA+NGL  +A
Sbjct: 252 CIKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKKA 311

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS----- 360
           +   + MK  G+ P+  TL G++SACA+ GA+  GK++  YA   GL  D+  G+     
Sbjct: 312 VASLHLMKLEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGM 371

Query: 361 ------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
                 +D A+ +F+ M   +  +W AMI+    +G+  + +    RM +EG   RPN++
Sbjct: 372 YAKFGFLDKAIDIFDKMKNKDVKTWTAMITGYGDHGQTRKVMETLYRMEEEG--FRPNEI 429

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF+ VL+A  H G+V EG + F  M   +G+ PK EHY C++DL  RAG L EA   ++ 
Sbjct: 430 TFLAVLNAYSHGGIVAEGMKCFKRMVYEYGITPKIEHYGCIIDLLGRAGLLEEAHKLIKS 489

Query: 475 MPEKVDEIV-LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
           +P    +I     LL AC+   + ++ + V + L+++   +  + ++ S  +A      D
Sbjct: 490 LPSTKGDITGWRTLLAACRVYGDVELGETVKRKLVDLNDEHPADSMLLSSTYAIAGRLSD 549

Query: 534 SAKMRALMREKGVSKTPGCSWIGID 558
             + +       V +  G S + I+
Sbjct: 550 YTQYQLRKEGNKVKEANGSSQVQIE 574


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 245/444 (55%), Gaps = 28/444 (6%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCG--KLDSARKVFDEIRERDLVSWNSMISGYSKM 198
           +H+ + + GL  D   +  LIT  A      LD A++VFD+I   +L +WN++I  Y+  
Sbjct: 54  IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASS 113

Query: 199 GYAKEAVELFGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
               +++ +F RM  +    PD+ T   ++ +  +L +L  GK   G V+K  +  + ++
Sbjct: 114 SNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFI 173

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++LI  Y KCG L    RVF     +DVV+WN+MITA+ Q G   EA+ LF  M+   V
Sbjct: 174 LNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV 233

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P+ IT++GVLSACA     + G+WV  Y  +  +   +            CGS++DA +
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKR 293

Query: 367 VFEDMPVTNEVSWNAMI------------SALAFNGRAHEALLLFERMSKEGGAARPNDV 414
           +F+ MP  + VSW  M+              LA +G   +A+ LF +M ++    +PN V
Sbjct: 294 LFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQED--KVKPNAV 351

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           TF  +L AC H GLV+EGR  F+ M   +G++P  +HY+CMVD+  RAG L EA + +E+
Sbjct: 352 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 411

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP      V GALLGAC   +N  ++++    L+E+E  N G YV+ S I+A    WD  
Sbjct: 412 MPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRV 471

Query: 535 AKMRALMREKGVSKTPGCSWIGID 558
           + +R LMR+ G+ K PGCS I +D
Sbjct: 472 SGLRKLMRDVGLKKEPGCSSIEVD 495



 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 214/415 (51%), Gaps = 35/415 (8%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYA 71
           ND        LSL+ +C  TK ++QIH QML   +    F   R+I           +YA
Sbjct: 29  NDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYA 88

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
             +F QI  PN Y +N +IR   ++   +   L     + +    PD FT+PF+  + + 
Sbjct: 89  QQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L  L  G + H  V K+ L  D  + +SLI  YA+CG+L    +VF     RD+VSWNSM
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSM 208

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+ + + G  +EA+ELF  M  +   P+ IT+V VL +C    D   G+WV  ++ +N++
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRI 268

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ------------N 299
             +  + +A++DMY KCG++  A+R+FD M  KD+V+W  M+  YA+            +
Sbjct: 269 XESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMH 328

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK-----YASQRGLRH 354
           G   +AI LF++M+   V P+ +T   +L AC+ +G ++ G+         Y    G++H
Sbjct: 329 GHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKH 388

Query: 355 -----DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFER 401
                DI    G +++A+++ E MP+    S W A++ A       HE ++L E+
Sbjct: 389 YACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTI----HENVVLAEQ 439


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/541 (31%), Positives = 297/541 (54%), Gaps = 22/541 (4%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H   + N +    F+   ++D    L   + A  LF  I   +  ++N +I GL   
Sbjct: 445 RQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHN 504

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            ++   ++ +  +MK  G+  D  ++     +C+N+ A+  G  +HS+  K  +  +  V
Sbjct: 505 -EEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAV 563

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
             SLI +Y++ G ++S+RKV   +    +V  N++I+G  +     EA+ELF ++ ++ F
Sbjct: 564 GSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGF 623

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKCGALVPAR 275
            P   T  S+L  C      V+GK V  + +K+  ++ +  +G +L+ +Y KC  L  A 
Sbjct: 624 KPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDAN 683

Query: 276 RVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           ++ + + + K++V W A I+ YAQNG S +++++F RM+   V  D+ T   VL AC+ +
Sbjct: 684 KLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEM 743

Query: 335 GALDLGKWVD---------KYASQRGLRHDIF--CGSIDDALKVFEDMP-VTNEVSWNAM 382
            AL  GK +           Y +      D++  CG +  + ++F+++    N + WN+M
Sbjct: 744 AALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSM 803

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I   A NG A+EALLLF++M +     +P+DVT +GVL AC HAGL+ EG   FD MS  
Sbjct: 804 IVGFAKNGYANEALLLFQKMQES--QIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQV 861

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           +G++P+ +HY+C++DL  R GHL +A + ++++P + D ++    L ACQ  K+ +  + 
Sbjct: 862 YGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKV 921

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
             + L+E+E  +S  YV  S + A    W ++   R  MREKGV K PGCSWI + + KQ
Sbjct: 922 AAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGN-KQ 980

Query: 563 S 563
           S
Sbjct: 981 S 981



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 220/418 (52%), Gaps = 14/418 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  L  +I   +  A+N +I   + +    S    LY  MK+ GL P   T+  +  + A
Sbjct: 277 ARTLLKRIRMTSTVAWNAVIASYSQSGLD-SEVFGLYKDMKKQGLMPTRSTFASILSAAA 335

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N+ A + G  +H++  K GLD +  V  SLI +Y + G +  A+KVFD   E+++V WN+
Sbjct: 336 NMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNA 395

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           ++ G+ +    +E +++F  MR  +   D+ T VSVLG+C +L  L LG+ V    +KN 
Sbjct: 396 ILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNG 455

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           MD + ++ +A++DMY K GA+  A+ +F  +  KD V+WNA+I   A N    EAI +  
Sbjct: 456 MDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLK 515

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS---------- 360
           RMK+ G+  D+++    ++AC++I A++ GK +   + +  +  +   GS          
Sbjct: 516 RMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFG 575

Query: 361 -IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            ++ + KV   +  ++ V  NA+I+ L  N R  EA+ LF+++ K+G   +P++ TF  +
Sbjct: 576 DVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDG--FKPSNFTFTSI 633

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           LS C        G+++      S  L   +     +V +Y +   L +A   +E +P+
Sbjct: 634 LSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPD 691



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 217/452 (48%), Gaps = 54/452 (11%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           +LS   +  + +  +Q+H  +L +      F    ++D+     + + A  +F  I+ P+
Sbjct: 163 VLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPD 222

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              +  MI G      +Y  +L L+ +M+++G  PD  T       C             
Sbjct: 223 TICWTSMIAGYHRV-GRYQQALALFSRMEKMGSVPDQVT-------CV------------ 262

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
                           ++I+  A  G+L  AR +   IR    V+WN++I+ YS+ G   
Sbjct: 263 ----------------TIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDS 306

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E   L+  M+++  +P   T  S+L +  ++     G+ +    VK+ +D N ++GS+LI
Sbjct: 307 EVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLI 366

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           ++Y K G +  A++VFD    K++V WNA++  + QN L  E I +F  M+ A +  D  
Sbjct: 367 NLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDF 426

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDM 371
           T + VL AC ++ +LDLG+ V     + G+  D+F            G+ID A  +F  +
Sbjct: 427 TFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLI 486

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           PV + VSWNA+I  LA N    EA+ + +RM   G A   ++V+F   ++AC +   ++ 
Sbjct: 487 PVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIAL--DEVSFATAINACSNIWAIET 544

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           G+++    S  + +       S ++DLY++ G
Sbjct: 545 GKQIHS-ASIKYNVCSNHAVGSSLIDLYSKFG 575



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 185/390 (47%), Gaps = 56/390 (14%)

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
           +G  PD F    V  +C+ L AL HG  VH  V K G          L+ MYA+CG++D 
Sbjct: 151 IGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDD 210

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE---ITLVSVLGS 229
           AR++FD I   D + W SMI+GY ++G  ++A+ LF RM +   +PD+   +T++S L S
Sbjct: 211 ARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLAS 270

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
            G LGD                                      AR +   +     V W
Sbjct: 271 MGRLGD--------------------------------------ARTLLKRIRMTSTVAW 292

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           NA+I +Y+Q+GL +E   L+  MK  G+ P + T   +LSA A++ A D G+ +   A +
Sbjct: 293 NAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVK 352

Query: 350 RGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            GL  ++F GS           I DA KVF+     N V WNA++     N    E + +
Sbjct: 353 HGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQM 412

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F+ M +    A  +D TF+ VL AC++   +D GR++   ++   G+       + M+D+
Sbjct: 413 FQYMRRADLEA--DDFTFVSVLGACINLYSLDLGRQVH-CITIKNGMDADLFVANAMLDM 469

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           Y++ G +  A      +P K D +   AL+
Sbjct: 470 YSKLGAIDVAKALFSLIPVK-DSVSWNALI 498



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 168/341 (49%), Gaps = 30/341 (8%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKM 198
           +H+ + ++GL     +  +L+ +Y R G++  A +             + +S++S +++ 
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134

Query: 199 GYAKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           G  ++ ++ F R+R      PD+  +  VL +C  LG L  G+ V   V+K+    + + 
Sbjct: 135 GSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFC 194

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            + L+DMY KCG +  ARR+FD +   D + W +MI  Y + G   +A+ LF+RM+  G 
Sbjct: 195 QAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGS 254

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377
            PD++T + ++S  AS+G L                         DA  + + + +T+ V
Sbjct: 255 VPDQVTCVTIISTLASMGRL------------------------GDARTLLKRIRMTSTV 290

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           +WNA+I++ + +G   E   L++ M K+G    P   TF  +LSA  +    DEGR++  
Sbjct: 291 AWNAVIASYSQSGLDSEVFGLYKDMKKQG--LMPTRSTFASILSAAANMTAFDEGRQIH- 347

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +   GL       S +++LY + G +S+A    +   EK
Sbjct: 348 ATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEK 388


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 308/567 (54%), Gaps = 26/567 (4%)

Query: 14  FTELNDPSLLREK--LLSLLKKCPSTKTVQQ---IHTQML-----INFIQKPNFLLIRII 63
           F E+   SL       ++ L+ C  +  ++Q   IH  +L     IN +   N L+    
Sbjct: 270 FGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYIN-VFVANALIAMYA 328

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
                  A+ +F+ +   +  ++N M+ G       Y  +L+ Y++M+  G KPD     
Sbjct: 329 RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN-GLYHEALQFYHEMRDAGQKPDLVAVI 387

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            +  + A      HG+ +H+   K GLD D  V +SL+ MYA+   +     +FD++ ++
Sbjct: 388 SIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK 447

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D+VSW ++I+G+++ G    A+ELF  ++ E    D + + S+L +C  L  +   K + 
Sbjct: 448 DVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIH 507

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
            ++++  +  +  + + ++D+YG+CG +  A R+F+ +  KDVV+W +MI+ Y  NGL+N
Sbjct: 508 SYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN 566

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---------RH 354
           EA+ LF+ MK  GV PD I+L+ +LSA AS+ AL  GK +  +  ++G            
Sbjct: 567 EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLV 626

Query: 355 DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           D++  CG+++ +  VF  +   + V W +MI+A   +G    A+ LF RM  E  A  P+
Sbjct: 627 DMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIA--PD 684

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            + F+ VL AC H+GL++EGRR  + M   + L P  EHY+C+VDL  RA HL EA+ FV
Sbjct: 685 HIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFV 744

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           + M  +    V  ALLGACQ   N ++ +   Q LLE++  N GNYV+ S +++  + W 
Sbjct: 745 KGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWK 804

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           D   +R  M+  G+ K PGCSWI + +
Sbjct: 805 DVEXVRMRMKASGLKKNPGCSWIEVGN 831



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 250/512 (48%), Gaps = 69/512 (13%)

Query: 13  AFTELND------PSL--LREKLLSLLKKCPSTKTV---QQIHTQMLI-NFIQKPNFLLI 60
           AF  L D      PS   L E   S+L+ C S K +   QQ+H  M+  N +    FL  
Sbjct: 59  AFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLST 118

Query: 61  RIIDLKDFNY--------ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           R++    F Y        A  LF  +     + +N MI    T  +    SL+LY +M+ 
Sbjct: 119 RLV----FMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLG-SLELYREMRV 173

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
            G+  D  T+P +  +C  L    +G  VH    K G      V++S++ MY +C  L+ 
Sbjct: 174 SGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNG 233

Query: 173 ARKVFDEIRER-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
           AR++FD + E+ D+VSWNSMIS YS  G + EA+ LFG M++    P+  T V+ L +C 
Sbjct: 234 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 293

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
           D   +  G ++   V+K+   +N ++ +ALI MY + G +  A  +F  M + D ++WN+
Sbjct: 294 DSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNS 353

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           M++ + QNGL +EA+  ++ M+ AG  PD + +I +++A A  G    G  +  YA + G
Sbjct: 354 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNG 413

Query: 352 LRHDIFCGS--IDDALK---------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  D+  G+  +D   K         +F+ MP  + VSW  +I+  A NG    AL LF 
Sbjct: 414 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 473

Query: 401 RMSKEGGAARPNDVTFI-GVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIPK 448
            +  EG      DV  I  +L AC           +H+ ++ +G  L DL+         
Sbjct: 474 EVQLEGIDL---DVMMISSILLACSGLKLISSVKEIHSYIIRKG--LSDLVLQ------- 521

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
               + +VD+Y   G++    D+  RM E ++
Sbjct: 522 ----NGIVDVYGECGNV----DYAARMFELIE 545



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 225/413 (54%), Gaps = 15/413 (3%)

Query: 67  DFNYASLLFHQISRPNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           D N A  LF ++    +  ++N MI   ++  Q    +L+L+ +M++  L P+ +T+   
Sbjct: 230 DLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE-ALRLFGEMQKASLAPNTYTFVAA 288

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C +   +  G+ +H++V K     +  V+++LI MYAR GK+  A  +F  + + D 
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +SWNSM+SG+ + G   EA++ +  MR+    PD + ++S++ +    G+ + G  +  +
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +KN +D +  +G++L+DMY K  ++     +FD M +KDVV+W  +I  +AQNG  + A
Sbjct: 409 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 468

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--------DIF 357
           + LF  ++  G++ D + +  +L AC+ +  +   K +  Y  ++GL          D++
Sbjct: 469 LELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVY 528

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG++D A ++FE +   + VSW +MIS    NG A+EAL LF  M + G    P+ ++
Sbjct: 529 GECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG--VEPDSIS 586

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            + +LSA      + +G+ +   +    G + +    S +VD+YAR G L ++
Sbjct: 587 LVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKS 638



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 213/452 (47%), Gaps = 28/452 (6%)

Query: 117 PDNFT----YPFVFISCANLLALNHGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLD 171
           P  F+    Y  V   C +  AL+ G  VH+ +     L     +S  L+ MY +CG L 
Sbjct: 72  PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            A K+FD +  + + +WN+MI  Y   G    ++EL+  MR      D  T   +L +CG
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWN 290
            L D   G  V G  +K       ++ ++++ MY KC  L  AR++FD M  K DVV+WN
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           +MI+AY+ NG S EA+ LF  M+ A + P+  T +  L AC     +  G ++     + 
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 351 GLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
               ++F            G + +A  +F +M   + +SWN+M+S    NG  HEAL  +
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
             M   G   +P+ V  I +++A   +G    G ++      + GL    +  + +VD+Y
Sbjct: 372 HEMRDAG--QKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN-GLDSDLQVGNSLVDMY 428

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI--ESSNSGN 517
           A+   +       ++MP+K  ++V    + A   Q  +    R ++L  E+  E  +   
Sbjct: 429 AKFCSMKYMDCIFDKMPDK--DVVSWTTIIAGHAQNGSH--SRALELFREVQLEGIDLDV 484

Query: 518 YVISSKIFA--NLKMWDDSAKMRALMREKGVS 547
            +ISS + A   LK+     ++ + +  KG+S
Sbjct: 485 MMISSILLACSGLKLISSVKEIHSYIIRKGLS 516


>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
          Length = 725

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 165/457 (36%), Positives = 258/457 (56%), Gaps = 24/457 (5%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           ++FT+    I+ ++L AL+  + +H+   K G   D  + ++L+  Y        A+ VF
Sbjct: 9   NHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNXVFAKSVF 68

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
             I   D+VSW S+ISG SK G+ +EA+  F  M   +  P+  TLVSV+ +C  L  + 
Sbjct: 69  KSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM---DVKPNTSTLVSVVSACCGLRAVR 125

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
            GK + G+ +++    N  + +AL+D Y KCG LV A+ +F  M  +DV++W  M+   A
Sbjct: 126 FGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLA 185

Query: 298 QNGLSNEAIMLFNRMKYAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
           Q GL  EA+ +F  M   G   P+++TL+ VL+AC+S+ AL+LG+WV  Y S   +R+D+
Sbjct: 186 QGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYIS---IRYDL 242

Query: 357 F---------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
                           C  +  A++VF ++   + +SW+ +I  +A NG    AL  F  
Sbjct: 243 VVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSL 302

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M   G    P+DVTFIG+LSAC HAGLV++G   F  M++ +G+ P+ +HY+CMVD+Y R
Sbjct: 303 MLVHG--VSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQMQHYACMVDMYGR 360

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG L EA  F+  MP + +  + GALL AC+   N  +   + Q L   +  + G   + 
Sbjct: 361 AGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGXIBQSLRNAKGVSIGTLALL 420

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S  +A+   WDD+ K+R +MR+ G+ K  GCSWI +D
Sbjct: 421 SNTYASSNRWDDANKVRDMMRDMGLKKMSGCSWIEVD 457



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 194/356 (54%), Gaps = 23/356 (6%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
           FIQ  N LL   +   +  +A  +F  IS P+  ++  +I GL+    K     +   + 
Sbjct: 46  FIQ--NTLLHSYVVENNXVFAKSVFKSISSPDVVSWTSIISGLS----KCGFDEEAIGEF 99

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV-SHSLITMYARCGK 169
             + +KP+  T   V  +C  L A+  G ++H    +  +D D+ +  ++L+  Y +CG 
Sbjct: 100 LSMDVKPNTSTLVSVVSACCGLRAVRFGKAIHGYSLR-SMDGDNIILDNALLDFYVKCGY 158

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-REEEFLPDEITLVSVLG 228
           L SA+ +F ++  RD++SW +M+ G ++ G  +EAVE+F  M +  E +P+E+TLV+VL 
Sbjct: 159 LVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLT 218

Query: 229 SCGDLGDLVLGKWVEGFV-VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
           +C  L  L LG+WV  ++ ++  + ++  +G+ALI+MY KC  +  A RVF+ + +KD++
Sbjct: 219 ACSSLSALNLGRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMI 278

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK-- 345
           +W+ +I   A NG    A+  F+ M   GV+PD +T IG+LSAC+  G ++ G    K  
Sbjct: 279 SWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAM 338

Query: 346 ---YASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNG 390
              Y     ++H     D++   G +++A      MP+  E   W A+++A   +G
Sbjct: 339 NNVYGIAPQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHG 394



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 191/414 (46%), Gaps = 71/414 (17%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISC 129
           A  LF ++ R +  ++  M+ GL         +++++  M + G   P+  T   V  +C
Sbjct: 162 AKYLFMKMFRRDVISWTTMVGGLAQG-GLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTAC 220

Query: 130 ANLLALNHGVSVHSSV-FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           ++L ALN G  VHS +  +  L  D +V ++LI MYA+C  +  A +VF+E+  +D++SW
Sbjct: 221 SSLSALNLGRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISW 280

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           +++I G +  G+   A++ F  M      PD++T + +L +C   G +      +G +  
Sbjct: 281 STIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVE-----QGLIFF 335

Query: 249 NKMDLNFYMG------SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGL 301
             M+  + +       + ++DMYG+ G L  A      M +  +   W A++ A   +G 
Sbjct: 336 KAMNNVYGIAPQMQHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHG- 394

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI 361
                   N   +  +B       GV     SIG L L    + YAS             
Sbjct: 395 --------NEKMFGXIBQSLRNAKGV-----SIGTLAL--LSNTYASSN---------RW 430

Query: 362 DDALKV---FEDMPVT--NEVSW---NAMIS-------ALAFNGRAHEALLLFERMSKEG 406
           DDA KV     DM +   +  SW   +AMI+       + AF G++              
Sbjct: 431 DDANKVRDMMRDMGLKKMSGCSWIEVDAMINRYDGANRSFAFAGKSR------------- 477

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
               P+  TFIG+ SA  H  LV++G  +F   ++  G++PK +HY+C+VD+YA
Sbjct: 478 --VLPDIATFIGLFSASSHKELVEQGF-VFLGATNDDGIMPKIQHYACVVDIYA 528


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 168/541 (31%), Positives = 280/541 (51%), Gaps = 21/541 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           + +H  ++ +      F+    +D+       +YA+ +F ++   +   +N M+ G   +
Sbjct: 72  EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
                 +  L+ +M+   + PD+ T   +  S +   +L    ++H+   ++G+D    V
Sbjct: 132 GHT-DKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTV 190

Query: 157 SHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           +++ I+ Y +CG LDSA+ VF+ I   +R +VSWNSM   YS  G A +A  L+  M  E
Sbjct: 191 ANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLRE 250

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           EF PD  T +++  SC +   L  G+ +    +    D +    +  I MY K      A
Sbjct: 251 EFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSA 310

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           R +FD M ++  V+W  MI+ YA+ G  +EA+ LF+ M  +G  PD +TL+ ++S C   
Sbjct: 311 RLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKF 370

Query: 335 GALDLGKWVDKYASQRGLRHDIF------------CGSIDDALKVFEDMPVTNEVSWNAM 382
           G+L+ GKW+D  A   G + D              CGSI +A  +F++ P    V+W  M
Sbjct: 371 GSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTM 430

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I+  A NG   EAL LF +M       +PN +TF+ VL AC H+G +++G   F +M   
Sbjct: 431 IAGYALNGIFLEALKLFSKMIDLD--YKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQV 488

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           + + P  +HYSCMVDL  R G L EA + +  M  K D  + GALL AC+  +N  ++++
Sbjct: 489 YNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
             + L  +E   +  YV  + I+A   MWD  A++R++M+++ + K PG S I ++    
Sbjct: 549 AAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNH 608

Query: 563 S 563
           S
Sbjct: 609 S 609



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 200/392 (51%), Gaps = 19/392 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           SL L+ +MKR G +P+NFT+PFV  +CA L  +     VH+ + K     D  V  + + 
Sbjct: 36  SLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVD 95

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           M+ +C  +D A KVF+ + ERD  +WN+M+SG+ + G+  +A  LF  MR  E  PD +T
Sbjct: 96  MFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVT 155

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +++++ S      L L + +    ++  +D+   + +  I  YGKCG L  A+ VF+A+ 
Sbjct: 156 VMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAID 215

Query: 283 NKD--VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
             D  VV+WN+M  AY+  G + +A  L+  M      PD  T I + ++C +   L  G
Sbjct: 216 RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQG 275

Query: 341 KWVDKYASQRGLRHDI---------FCGSID--DALKVFEDMPVTNEVSWNAMISALAFN 389
           + +  +A   G   DI         +  S D   A  +F+ M     VSW  MIS  A  
Sbjct: 276 RLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEK 335

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G   EAL LF  M K G   +P+ VT + ++S C   G ++ G+ + D  +  +G   + 
Sbjct: 336 GDMDEALALFHAMIKSG--EKPDLVTLLSLISGCGKFGSLETGKWI-DARADIYG-CKRD 391

Query: 450 EHYSC--MVDLYARAGHLSEAWDFVERMPEKV 479
               C  ++D+Y++ G + EA D  +  PEK 
Sbjct: 392 NVMICNALIDMYSKCGSIHEARDIFDNTPEKT 423



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 159/353 (45%), Gaps = 48/353 (13%)

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +WN  I          E++ LF  M+   F P+  T   V  +C  L D+   + V   +
Sbjct: 19  AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 78

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K+    + ++G+A +DM+ KC ++  A +VF+ M  +D  TWNAM++ + Q+G +++A 
Sbjct: 79  IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAF 138

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
            LF  M+   + PD +T++ ++ + +   +L L + +     + G+   +          
Sbjct: 139 SLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTY 198

Query: 358 --CGSIDDALKVFE--DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
             CG +D A  VFE  D      VSWN+M  A +  G A +A  L+  M +E    +P+ 
Sbjct: 199 GKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLRE--EFKPDL 256

Query: 414 VTFIGVLSACVHAGLVDEGRRL------------FDLMSSSFGLIPKSE----------- 450
            TFI + ++C +   + +GR +             + +++   +  KSE           
Sbjct: 257 STFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDI 316

Query: 451 -------HYSCMVDLYARAGHLSEAWDFVERM---PEKVDEIVLGALLGACQK 493
                   ++ M+  YA  G + EA      M    EK D + L +L+  C K
Sbjct: 317 MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 18/152 (11%)

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           RR++       V  WN  I          E+++LF  MK  G  P+  T   V  ACA +
Sbjct: 6   RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
             +   + V  +  +     D+F           C S+D A KVFE MP  +  +WNAM+
Sbjct: 66  ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 125

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
           S    +G   +A  LF  M       R N++T
Sbjct: 126 SGFCQSGHTDKAFSLFREM-------RLNEIT 150


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 177/555 (31%), Positives = 293/555 (52%), Gaps = 27/555 (4%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLI------NFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
           KLL L     + K  + IH+ +++      N I + N L+     +   + A  LF ++ 
Sbjct: 34  KLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMP 93

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL----GLKPDNFTYPFVFISCANLLAL 135
             N  +++     L T +     SLK+   +K +     + P+ +       SC +   +
Sbjct: 94  ERNVVSWS----ALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRV 149

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G   H  + K G    ++V ++L++MY++C  +  A  V++E+   D+V++NS++S  
Sbjct: 150 EEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSL 209

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            + GY +E +E+   M  E    D++T V+    C  L DL LG  V G ++ + ++ + 
Sbjct: 210 VENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDA 269

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           Y+ SA+I+MYGKCG  + AR VFD + +++VV W A++ +  QNG   EA+ LF++M+  
Sbjct: 270 YVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQE 329

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDA 364
            V  ++ T   +L+ACA + A   G  +  ++ + G +H +  G+           I+ A
Sbjct: 330 NVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAA 389

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVF DM   + ++WNAMI   + +G   +ALL+F+ M        PN VTF GVLSAC 
Sbjct: 390 KKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDML--AAEEHPNYVTFTGVLSACG 447

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           H GLV EG      +   FG+ P  EHY+C+V L ++ G L+EA +F+   P K D +  
Sbjct: 448 HLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAW 507

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
             LL AC   +N  + + V + +LE++ ++ G Y + S I+A  K WD   K+R LMR+K
Sbjct: 508 RTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDK 567

Query: 545 GVSKTPGCSWIGIDD 559
            + K PG SWI I +
Sbjct: 568 KIKKEPGVSWIEIGN 582


>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 616

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/530 (34%), Positives = 281/530 (53%), Gaps = 27/530 (5%)

Query: 48  LINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA-----WQKYSH 102
           LIN +   N LL   +  +D + A  LF +++R N  ++N +I GL        ++   H
Sbjct: 47  LINELSVQNKLLRVYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGYGGEFKMRQH 106

Query: 103 SLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           S+ LY++   +GL  PD  T+  +F SC  L  +  G  +HS V KIG D D  V  +++
Sbjct: 107 SIFLYFKKMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVV 166

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
             YA+CG  + AR  F  I  RDLV WN M+        ++EA+E+F  M+ E F  D+ 
Sbjct: 167 DFYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDF 226

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           T  S+L  C   G   LGK +   ++K   DL+  + S+L+++Y K   L  AR+VFD M
Sbjct: 227 TFSSLLSLCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEM 286

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA-SIGALDLG 340
             ++ V+W  MI  Y Q+    EA+ LF RM      PD++T   +LS+C  + GA +L 
Sbjct: 287 PTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCGFTSGASEL- 345

Query: 341 KWVDKYASQRGLRHDIF-------------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
             +  ++    L  + F             CG I  AL+ F  +   + V+W ++I  LA
Sbjct: 346 --MQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLA 403

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
             G   +A+ LF++M   G   RP+ + F+GVLSAC H G V  G   F+LM++ + L+P
Sbjct: 404 LCGLEKDAVKLFDKMLSYG--IRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVP 461

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
            SEH +C++DL  RAG L +A+D ++ MP++     L A + AC+   N  +++R M+  
Sbjct: 462 DSEHLTCLIDLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRTHGNLRLAKRAME-- 519

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
              E     NY + S ++A+   W D A+MR L+ ++   KTPG SW+ I
Sbjct: 520 FASEPDEPVNYSLVSNMYASEGRWSDVARMRKLINDRCEQKTPGLSWVEI 569



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 169/340 (49%), Gaps = 43/340 (12%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +HS V K+GL  +  V + L+ +Y +C  LDSAR +FDE+  R++VSWN++I G    GY
Sbjct: 38  LHSLVVKLGLINELSVQNKLLRVYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGY 97

Query: 201 AKEAVELFGRMREEEFL------------PDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
             E      +MR+                PD IT   +  SC  L D+  G+ +  FV+K
Sbjct: 98  GGEF-----KMRQHSIFLYFKKMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMK 152

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              DL+ ++GSA++D Y KCG    AR  F  ++ +D+V WN M+     N LS EAI +
Sbjct: 153 IGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEV 212

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-------- 360
           F  M+  G   D  T   +LS C   G+ +LGK +     ++    DI   S        
Sbjct: 213 FRLMQLEGFKGDDFTFSSLLSLCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYAK 272

Query: 361 ---IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
              + DA KVF++MP  N VSW  MI     +    EA+ LF RM ++     P+++TF 
Sbjct: 273 NDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYC--PDELTFA 330

Query: 418 GVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLI 446
            +LS+C           VH+ L+  G   F  +S + GLI
Sbjct: 331 SLLSSCGFTSGASELMQVHSCLIKLGFEAF--LSINNGLI 368



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 23/256 (8%)

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +   VVK  +     + + L+ +Y KC  L  AR +FD M  ++VV+WN +I      G 
Sbjct: 38  LHSLVVKLGLINELSVQNKLLRVYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGY 97

Query: 302 SNE-------AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
             E         + F +M    V+PD IT  G+  +C  +  ++ G+ +  +  + G   
Sbjct: 98  GGEFKMRQHSIFLYFKKMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDL 157

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D F           CG  +DA   F  +   + V WN M+    FN  + EA+ +F  M 
Sbjct: 158 DCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQ 217

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM-SSSFGLIPKSEHYSCMVDLYARA 462
            EG   + +D TF  +LS C + G  + G++L  L+   SF L       S +V++YA+ 
Sbjct: 218 LEG--FKGDDFTFSSLLSLCKYKGSGELGKQLHCLLIKQSFDLDILVA--SSLVNVYAKN 273

Query: 463 GHLSEAWDFVERMPEK 478
            +L +A    + MP +
Sbjct: 274 DNLYDARKVFDEMPTR 289


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/536 (35%), Positives = 282/536 (52%), Gaps = 20/536 (3%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +++H  ++     K  F    ++D    L D + A+L+F ++ + +  ++N  I G    
Sbjct: 222 RKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLH 281

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV--SVHSSVFKIGLDEDD 154
                H+L+L  QMK  GL P+ FT   +  +CA   A    +   +H  + K   D DD
Sbjct: 282 GHD-QHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDD 340

Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
           ++  +L+ MYA+ G LD ARKVF+ I  +DL+ WN++ISG S  G   E++ LF RMR+E
Sbjct: 341 YIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKE 400

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
               +  TL +VL S   L  +     V     K     + ++ + LID Y KC  L  A
Sbjct: 401 GSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYA 460

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            +VF+   + +++ + +MITA +Q     +AI LF  M   G+ PD   L  +L+ACAS+
Sbjct: 461 NKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASL 520

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
            A + GK V  +  +R    D+F           CGSI+DA   F  +P    VSW+AMI
Sbjct: 521 SAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMI 580

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
             LA +G    AL +F RM  E  A  PN +T   VL AC HAGLVDE +  F  M   F
Sbjct: 581 GGLAQHGHGKRALDVFRRMVDERIA--PNHITLTSVLCACNHAGLVDEAKGYFSSMKEMF 638

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           G+    EHYSCM+DL  RAG L +A + V  MP + +  V GALL A +  ++ ++ +  
Sbjct: 639 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLA 698

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            + L  +E   SG +V+ +  +A+  MWD+ AK+R LM++  V K P  SW+ + D
Sbjct: 699 AEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKD 754



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 231/478 (48%), Gaps = 50/478 (10%)

Query: 71  ASLLFHQISRP-NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F + +R  N  ++N M+        + S +++L+ +M   G++P+ F +  V  +C
Sbjct: 154 ARRVFDEAARDRNAVSWNGMMSAFVKN-DRCSDAVELFGEMVWSGVRPNEFGFSCVVNAC 212

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
                L  G  VH+ V + G D+D   +++L+ MY++ G +  A  VF ++ + D+VSWN
Sbjct: 213 TGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWN 272

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL--GSCGDLGDLVLGKWVEGFVV 247
           + ISG    G+ + A+EL  +M+    +P+  TL S+L   +    G   LG+ + GF++
Sbjct: 273 AFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMI 332

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K   D + Y+G AL+DMY K G L  AR+VF+ +  KD++ WNA+I+  +  G   E++ 
Sbjct: 333 KACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLS 392

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF RM+  G + ++ TL  VL + AS+ A+     V   A + G   D            
Sbjct: 393 LFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYW 452

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            C  +  A KVFE+    N +++ +MI+AL+      +A+ LF  M ++G    P+    
Sbjct: 453 KCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKG--LEPDPFVL 510

Query: 417 IGVLSACVHAGLVDEGRRLF------DLMSSSF------------GLIPKSE-------- 450
             +L+AC      ++G+++         M+  F            G I  ++        
Sbjct: 511 SSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPD 570

Query: 451 ----HYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQ 501
                +S M+   A+ GH   A D   RM ++    + I L ++L AC      D ++
Sbjct: 571 KGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAK 628



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/466 (29%), Positives = 212/466 (45%), Gaps = 50/466 (10%)

Query: 25  EKLLSLLKKCPSTKTV---QQIHTQMLINFIQKP--NFLLIRIIDLKDFNYASLLFHQIS 79
           E +  LL +  +T+++     IH  +L + +     N LL      +    A  +F +  
Sbjct: 5   ESISPLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDETP 64

Query: 80  RPNEYAFNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            P   +++     L TA+   +    +L  +  M+  G++ + F  P V + CA    L 
Sbjct: 65  DPCHVSWS----SLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIV-LKCAPDAGL- 118

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI-RERDLVSWNSMISGY 195
            GV VH+     GL  D  V+++L+ MY   G +D AR+VFDE  R+R+ VSWN M+S +
Sbjct: 119 -GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            K     +AVELFG M      P+E     V+ +C    DL  G+ V   VV+   D + 
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           +  +AL+DMY K G +  A  VF  +   DVV+WNA I+    +G    A+ L  +MK +
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 316 GVNPDKITLIGVL----------------------SACASIGALDLGKWVDKYASQRGLR 353
           G+ P+  TL  +L                       ACA          VD YA      
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKY---- 353

Query: 354 HDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G +DDA KVFE +P  + + WNA+IS  +  G   E+L LF RM KEG  +  N 
Sbjct: 354 -----GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEG--SDINR 406

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            T   VL +      + +  ++  L +   G +  S   + ++D Y
Sbjct: 407 TTLAAVLKSTASLEAISDTTQVHAL-AEKIGFLSDSHVVNGLIDSY 451



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 179/371 (48%), Gaps = 27/371 (7%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+ + K GL       + L++ Y++C    SAR+VFDE  +   VSW+S+++ YS 
Sbjct: 23  GAHIHAHLLKSGLLHA--FRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
               +EA+  F  MR      +E  L  VL    D G   LG  V    V   +  + ++
Sbjct: 81  NALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIFV 137

Query: 258 GSALIDMYGKCGALVPARRVFD-AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
            +AL+ MYG  G +  ARRVFD A  +++ V+WN M++A+ +N   ++A+ LF  M ++G
Sbjct: 138 ANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSG 197

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDAL 365
           V P++     V++AC     L+ G+ V     + G   D+F            G I  A 
Sbjct: 198 VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAA 257

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS--AC 423
            VF  +P T+ VSWNA IS    +G    AL L  +M   G    PN  T   +L   A 
Sbjct: 258 LVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV--PNVFTLSSILKACAG 315

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEKVDE 481
             AG    GR++   M  +      S+ Y    +VD+YA+ G L +A    E +P K D 
Sbjct: 316 AGAGAFALGRQIHGFMIKA---CADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-DL 371

Query: 482 IVLGALLGACQ 492
           ++  AL+  C 
Sbjct: 372 LLWNALISGCS 382



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 140/290 (48%), Gaps = 24/290 (8%)

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L LG  +   ++K+ +   F   + L+  Y KC     ARRVFD   +   V+W++++TA
Sbjct: 20  LFLGAHIHAHLLKSGLLHAFR--NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTA 77

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y+ N L  EA+  F  M+  GV  ++  L  VL      G   LG  V   A   GL  D
Sbjct: 78  YSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGD 134

Query: 356 IFC-----------GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMS 403
           IF            G +D+A +VF++     N VSWN M+SA   N R  +A+ LF  M 
Sbjct: 135 IFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMV 194

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G   RPN+  F  V++AC  +  ++ GR++  ++  + G        + +VD+Y++ G
Sbjct: 195 WSG--VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRT-GYDKDVFTANALVDMYSKLG 251

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
            +  A     ++P K D +   A +  C    +    Q  ++LLL+++SS
Sbjct: 252 DIHMAALVFGKVP-KTDVVSWNAFISGCVLHGH---DQHALELLLQMKSS 297


>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 801

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 179/550 (32%), Positives = 285/550 (51%), Gaps = 18/550 (3%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII--DLKDFN 69
           +A T+    S    KL   LK C +   + Q H  M+   +    F L +++   + D N
Sbjct: 1   MANTQFQAISNAFHKLTLALKSCKTITEIHQFHCYMIKTSLTNVPFTLSKLLAASIFDMN 60

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           YAS +F  I  PN + +N M+RG + +    + +L ++ +++  G   D F++  V  +C
Sbjct: 61  YASTIFTCIQNPNLFMYNTMLRGYSVS-NSSNKALPIFNKLRNSGNGLDPFSFIAVMKAC 119

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSW 188
                +  G  VH  V K G      ++++++  Y  CG++D ARKVFDE  ER DLVSW
Sbjct: 120 GRSFEVGFGRGVHGIVVKSGNRFFVDLNNTILQFYCVCGRIDDARKVFDECPERNDLVSW 179

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N ++ G   +       +LF +           T +S+L + GD+G  VLGK + G+ +K
Sbjct: 180 NILMGGCVLVSDYSFVFDLFLKRGCSGIRASVATTLSLLSAAGDIGSFVLGKSLHGYCIK 239

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
                N  + +ALIDMY K G +  AR+VFD +V KDVV WN +I  YA++ L  EA+ L
Sbjct: 240 IGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVAL 299

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
              M+  GV P+  TL+G+LS  ++ G++   ++V     +  L  D+            
Sbjct: 300 LQSMRQEGVKPNSSTLVGLLSVYSASGSMQGVRYVTSLIEEEKLELDVILGTALVDVYAK 359

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG +D+A+++FE M   +  SW A+IS    +G+A  A+ LF RM  EG   RPN++TF+
Sbjct: 360 CGFLDEAMEIFERMENKDVKSWTAVISGHGIHGQAINAISLFNRMENEG--FRPNEITFL 417

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            +L+AC H GLV EG   F  M    G  P  EHY C++DL  RAG L EA++ ++ +P 
Sbjct: 418 AILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHYGCLIDLLGRAGMLHEAFELIKSLPI 477

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           K D      LL AC+   +  + + V  +L    + +  + ++ S  +A      D  +M
Sbjct: 478 KGDATSWRTLLSACRVHGDVKLGECVKDVLSNFYTPHPTDSLLISGTYAAAGRISDLTRM 537

Query: 538 RALMREKGVS 547
           +  M++  V+
Sbjct: 538 QE-MKQTNVT 546



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 203/407 (49%), Gaps = 31/407 (7%)

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           R +  ++N+++ G       YS    L+ +    G++    T   +  +  ++ +   G 
Sbjct: 173 RNDLVSWNILMGGCVLV-SDYSFVFDLFLKRGCSGIRASVATTLSLLSAAGDIGSFVLGK 231

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S+H    KIG   + +V  +LI MYA+ G +  ARKVFD + E+D+V WN +I  Y++  
Sbjct: 232 SLHGYCIKIGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSC 291

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             +EAV L   MR+E   P+  TLV +L      G +   ++V   + + K++L+  +G+
Sbjct: 292 LVEEAVALLQSMRQEGVKPNSSTLVGLLSVYSASGSMQGVRYVTSLIEEEKLELDVILGT 351

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+D+Y KCG L  A  +F+ M NKDV +W A+I+ +  +G +  AI LFNRM+  G  P
Sbjct: 352 ALVDVYAKCGFLDEAMEIFERMENKDVKSWTAVISGHGIHGQAINAISLFNRMENEGFRP 411

Query: 320 DKITLIGVLSACASIGALDLG--------------KWVDKYASQRGLRHDIF--CGSIDD 363
           ++IT + +L+AC+  G +  G               WV+ Y    G   D+    G + +
Sbjct: 412 NEITFLAILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHY----GCLIDLLGRAGMLHE 467

Query: 364 ALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI-GVLS 421
           A ++ + +P+  +  SW  ++SA   +G       + + +S       P D   I G  +
Sbjct: 468 AFELIKSLPIKGDATSWRTLLSACRVHGDVKLGECVKDVLSN-FYTPHPTDSLLISGTYA 526

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGL----IPKSEHYSCMVDLYARAGH 464
           A   AG + +  R+ ++  ++  L    +P++E  S + +L  + G 
Sbjct: 527 A---AGRISDLTRMQEMKQTNVTLDNYRVPETEGESMVKELSMKLGE 570


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 182/584 (31%), Positives = 296/584 (50%), Gaps = 63/584 (10%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN-------YASLL 74
           +L  KL ++L    +    +Q H  ++IN       LL+R I L   N       Y   +
Sbjct: 21  MLAAKLTTILNNYLTANQAKQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSI 80

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            + +  P+ +++   IR  +   Q +  +L LY QM+R GL P  F       + A    
Sbjct: 81  LYHLPHPDSFSWGWAIRYFSQQGQ-FKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTY 139

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER----------- 183
              G+S+H+  +K G     +V  +L+ +Y++ G +++A+KVFDE+ E+           
Sbjct: 140 KMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSG 199

Query: 184 --------------------DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
                               D++SWNSMISGY+K+G    A  LF +M E+ +      L
Sbjct: 200 HLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNY-SSWNAL 258

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
           +S   +CGD+      ++ +    +N +         +I  Y KCG +  A ++FD +  
Sbjct: 259 ISGYVNCGDIKSA--WRFFDAMPERNSVSW-----ITMIAGYSKCGDVDSASKLFDQIAK 311

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGK 341
           KD++T+NAMI+ +AQN    +A+ LF+ M   YA + PD++TL  V+SAC+ +G L    
Sbjct: 312 KDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFAS 371

Query: 342 WVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           W++ Y +  G   D             CGS+D A ++F  +   + V+++AMIS    NG
Sbjct: 372 WIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGING 431

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           +  +A+ LF+ M        PN  TF G+L+AC HAGLV EG R F  M    GL+P ++
Sbjct: 432 KVADAIKLFDMMVD--AQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKDH-GLVPSTD 488

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+ MVDL  RAG L +A++ ++ MP +    V GALL AC    N ++ +   Q    +
Sbjct: 489 HYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQHCFNL 548

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           E++ +  Y + + I+++   WDD  ++R L +EK ++K  GCSW
Sbjct: 549 ETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSW 592


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 259/458 (56%), Gaps = 12/458 (2%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +PD+ T+     +CA L  L  G SV    F  G  +D  V  SL+ +YAR G +  A K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD +  RD V+W++M++G+   G   +A++++ RMRE+    DE+ ++ V+ +C    +
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G  V G ++++ M ++    ++L+DMY K G L  A RVF  MV+++ V+W+AMI+ 
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           +AQNG S+EA+ LF  M+ +G+ PD   L+  L AC++IG L LG+ V  +  +R   + 
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 356 IF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           I           CGS+  A  +F  +   + + WNAMI+    +GR  +AL LF+ M++ 
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   RP+  TF  +LSA  H+GLV+EG+  F  M + F + P  +HY C+VDL AR+G +
Sbjct: 405 G--MRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLV 462

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA D +  M  +    +  ALL  C   K  ++ + +   +LE++  + G   + S ++
Sbjct: 463 EEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
           A  K WD   ++R LM++ G  K PGCS I I   + +
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHA 560



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 188/364 (51%), Gaps = 26/364 (7%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++ R +   ++ M+ G  +A Q    ++++Y +M+  G+K D      V  +C    
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLD-AIQMYRRMREDGVKGDEVVMIGVIQACTAAR 223

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G SVH  + + G+  D   + SL+ MYA+ G LD A +VF  +  R+ VSW++MIS
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G+++ G + EA+ LF  M+     PD   LVS L +C ++G L LG+ V GF+V+ + D 
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDF 342

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  +G+A IDMY KCG+L  A+ +F+ + ++D++ WNAMI     +G   +A+ LF  M 
Sbjct: 343 NCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN 402

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
             G+ PD  T   +LSA +  G ++ GK              ++ G + +  K+      
Sbjct: 403 ETGMRPDHATFASLLSALSHSGLVEEGK--------------LWFGCMVNHFKI-----T 443

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
             E  +  ++  LA +G   EA  L   M  E     P    ++ +LS C++   ++ G 
Sbjct: 444 PAEKHYVCLVDLLARSGLVEEASDLLTSMKAE-----PTVAIWVALLSGCLNNKKLELGE 498

Query: 434 RLFD 437
            + D
Sbjct: 499 SIAD 502



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 44/236 (18%)

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           +++ G    A+ +F  +  A   PD  T    LSACA +G L  G+ V   A   G + D
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 356 IFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +F            G++ DA+KVF+ MP  + V+W+ M++     G+  +A+ ++ RM +
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 405 EGGAARPNDVTFIGVLSAC-----------VHAGLVDEGRR-----------------LF 436
           +G   + ++V  IGV+ AC           VH  L+  G R                 L 
Sbjct: 203 DG--VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 437 DLMSSSFGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           D+    FGL+       +S M+  +A+ G   EA      M     +   GAL+ A
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSA 316


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 255/458 (55%), Gaps = 19/458 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P   TY  + + C +  +L+ G+ VH  +   G D+D  ++  LI MY+  G +D ARKV
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC----GD 232
           FD+ R+R +  WN++    +  G+ +E + L+ +M       D  T   VL +C      
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              L  GK +   + +   + + Y+ + L+DMY + G +  A  VF+ M  ++VV+W+AM
Sbjct: 195 ADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAM 254

Query: 293 ITAYAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           I  YA+NG + EA+  F  M  +    +P+ +T++ VL ACAS+ AL+ G+ +  Y  +R
Sbjct: 255 IACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRR 314

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           GL   +            CG +D   +VF+ M   + VSWN++IS+   +G   +A+ +F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIF 374

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           E M   G  A P  VTF+ VL AC H GLV+EG+RLF+ M    G+ P+ EHY+CMVDL 
Sbjct: 375 EEMLANG--ASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLL 432

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA   V+ M  +    V G+LLG+C+   N ++++R  + L  +E  N+GNYV
Sbjct: 433 GRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYV 492

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + + I+A  +MWD+  +++ L+  +G+ K PG  W+ +
Sbjct: 493 LLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEV 530



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 236/465 (50%), Gaps = 51/465 (10%)

Query: 42  QIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
           ++H  +L N   +  FL  ++I    DL   +YA  +F +  +   Y +N + R LT A 
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC-ANLLALNH---GVSVHSSVFKIGLDED 153
                 L LY++M R+G++ D FTY +V  +C A+    +H   G  +H+ + + G +  
Sbjct: 158 HG-EEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSH 216

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
            ++  +L+ MYAR G +D A  VF+ +  R++VSW++MI+ Y+K G A EA+  F  M  
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMT 276

Query: 214 E--EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
           E  +  P+ +T+VSVL +C  L  L  G+ + G++++  +D    + SAL+ MYG+CG L
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
              +RVFD M ++DVV+WN++I++Y  +G   +AI +F  M   G +P  +T + VL AC
Sbjct: 337 DVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNG 390
           +  G ++ GK + +                     ++ D  +  +V  +  M+  L    
Sbjct: 397 SHEGLVEEGKRLFE--------------------SMWRDHGIKPQVEHYACMVDLLGRAN 436

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD----EGRRLFDLMSSSFGLI 446
           R  EA  + + M  E     P    +  +L +C   G V+      RRLF L   + G  
Sbjct: 437 RLDEAAKMVQDMRTE-----PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAG-- 489

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
               +Y  + D+YA A    + WD V+R+ + ++   L  L G C
Sbjct: 490 ----NYVLLADIYAEA----QMWDEVKRVKKLLEHRGLQKLPGRC 526



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 142/308 (46%), Gaps = 20/308 (6%)

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +S N +I    K G  K+A+    R+  +E  P + T   ++  CG    L  G  V   
Sbjct: 47  ISNNQLIQSLCKEGKLKQAL----RVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++ N  D + ++ + LI MY   G++  AR+VFD    + +  WNA+  A    G   E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSAC----ASIGALDLGKWVDKYASQRGLRHDIFC--- 358
           + L+ +M   GV  D+ T   VL AC     +   L  GK +  + ++RG    ++    
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 359 --------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                   G +D A  VF  MPV N VSW+AMI+  A NG+A EAL  F  M  E   + 
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VT + VL AC     +++GR +   +    GL       S +V +Y R G L     
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRR-GLDSILPVISALVTMYGRCGKLDVGQR 341

Query: 471 FVERMPEK 478
             +RM ++
Sbjct: 342 VFDRMHDR 349


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 261/485 (53%), Gaps = 52/485 (10%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +  +C N++ L     +H+ + K  L +   +   ++ +     + + A  +F  + + +
Sbjct: 20  ILKNCPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPN 76

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMR-----EEEFLPDEITLVSVLGSCGDLGDLVLG 239
              +N+MI  Y        A+ ++ +M      E    PD+ T   V+ SC  L    LG
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLG 136

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN--------- 290
           K V G V K     N  + ++L++MY KC +L  A +VF+ M  +D V+WN         
Sbjct: 137 KQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRL 196

Query: 291 ----------------------AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
                                 A+++ YA+ G   +A+  F RM+  G+ PD+I+L+ VL
Sbjct: 197 GQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVL 256

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
            ACA +GAL+LGKW+  YA + G   +I            CGSID+  ++F+ M   + +
Sbjct: 257 PACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVI 316

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           SW+ MI  LA +GRAHEA+ LF+ M K      PN +TF+G+LSAC HAGL++EG R F+
Sbjct: 317 SWSTMIVGLANHGRAHEAIELFQEMQK--AKIEPNIITFVGLLSACAHAGLLNEGLRYFE 374

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
            M   + + P  EHY C+V+L   +G L +A + +++MP K D  + G+LL +C+   N 
Sbjct: 375 SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNL 434

Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +++   M+ LLE+E +++GNYV+ S ++A+L  WD  ++MR LMR K + KTPGCS I +
Sbjct: 435 EIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494

Query: 558 DDPKQ 562
           D+  Q
Sbjct: 495 DNMVQ 499



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 256/504 (50%), Gaps = 93/504 (18%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           + +  + +LK CP+   +++IH  ++   + + +FL+ +++D+     +  YA+LLF ++
Sbjct: 13  MEDIFVPILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRV 72

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-------LKPDNFTYPFVFISCAN 131
           + PN + +N MIR      + Y  ++ +Y QM  LG       + PD FT+PFV  SCA 
Sbjct: 73  ADPNAFLYNAMIRAYKHN-KVYVLAITVYKQM--LGHSHGENPIFPDKFTFPFVVKSCAG 129

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L+  + G  VH  VFK G   +  V +SL+ MY +C  LD A KVF+E+ ERD VSWN++
Sbjct: 130 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTL 189

Query: 192 ISGYSKM--------------------------GYAK-----EAVELFGRMREEEFLPDE 220
           ISG+ ++                          GYA+     +A+E F RM+     PDE
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           I+LVSVL +C  LG L LGKW+  +  K     N  + +ALI+MY KCG++   RR+FD 
Sbjct: 250 ISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQ 309

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  +DV++W+ MI   A +G ++EAI LF  M+ A + P+ IT +G+LSACA  G L+ G
Sbjct: 310 MNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG 369

Query: 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-----WNAMISALAFNGRAHEA 395
                                   L+ FE M     +      +  +++ L  +GR  +A
Sbjct: 370 ------------------------LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL---VDEGRRLFDLMSSSFGLIPKSEH 451
           L L ++M       +P+   +  +LS+C  H+ L   V     L +L  +  G      +
Sbjct: 406 LELIKKMP-----MKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTG------N 454

Query: 452 YSCMVDLYARAGHLSEAWDFVERM 475
           Y  + +LYA  G     WD V RM
Sbjct: 455 YVLLSNLYADLG----KWDGVSRM 474



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 167/354 (47%), Gaps = 24/354 (6%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           +++   L+ +  KC S     ++  +M        N L+   + L     A  +F ++  
Sbjct: 152 TVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQD 211

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              +++  ++ G       Y+ +L+ + +M+ +G++PD  +   V  +CA L AL  G  
Sbjct: 212 KTIFSWTAIVSGYARIGC-YADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKW 270

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K G   +  V ++LI MYA+CG +D  R++FD++ ERD++SW++MI G +  G 
Sbjct: 271 IHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGR 330

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMG- 258
           A EA+ELF  M++ +  P+ IT V +L +C   G L  G ++ E      K D N   G 
Sbjct: 331 AHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESM----KRDYNIEPGV 386

Query: 259 ---SALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITA-YAQNGLSNEAIMLFNRMK 313
                L+++ G  G L  A  +   M  K D   W +++++  + + L    I + + ++
Sbjct: 387 EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLE 446

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKW-----VDKYASQRGLRHDIFCGSID 362
               +     L+  L A       DLGKW     + K    + ++    C SI+
Sbjct: 447 LEPADTGNYVLLSNLYA-------DLGKWDGVSRMRKLMRSKSMKKTPGCSSIE 493


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 296/584 (50%), Gaps = 55/584 (9%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL---- 74
           +P  L  KL ++     S K  +Q+H  +LI+ +     +L R I L   NY++ +    
Sbjct: 2   EPRCLFSKLSTI---SLSVKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYV 58

Query: 75  ---FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
               H    P+ +++   IR  +T   ++  +  LY QM+R GL P  F       +CA 
Sbjct: 59  HSVLHHSKSPDSFSWACAIR-FSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACAR 117

Query: 132 LLALNHGVSVHSSVFKIGLD---EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           +     G+S+H  V K G     +  +V  +L+  Y + G ++ ARK+FDE+ ER++VSW
Sbjct: 118 IAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSW 177

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV----------L 238
           NSM++GY K G    A  +F  + +++ +    +++S     GD+   +           
Sbjct: 178 NSMLAGYLKSGDLVVAQRVFDEIPQKDVISWN-SMISGYARAGDMEKALSLFQQMPERNF 236

Query: 239 GKW---VEGFVVKNKMD-----------LNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
             W   + G+V    +D            N      +I  Y KCG +  A  +FD +  K
Sbjct: 237 ASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGK 296

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACASIGALDLGKW 342
           D++ +NAMI  YAQN    EA+ LFN M    VN  PD++TL  V+SAC+ +G L  G W
Sbjct: 297 DLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPW 356

Query: 343 VDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           ++ Y  + G+  D             CGSID A ++F  +   + V++ AMI     NG+
Sbjct: 357 IESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGK 416

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A +A+ LF+ M        PN +TFIG+L+A  HAGLV+EG   F  M   + L+P  +H
Sbjct: 417 AIDAIKLFDEMVD--AQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKK-YNLVPSVDH 473

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y  MVDL+ RAG L EA + ++ MP +    V GALL AC+   N +  +   Q   E+E
Sbjct: 474 YGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELE 533

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
              +G   + S I+A+ + WDD  ++R + +EKG SK PGCSW+
Sbjct: 534 PDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWM 577



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 211/433 (48%), Gaps = 29/433 (6%)

Query: 10  RHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN 69
           +   F+   D   +   L+    K    +  +++  +M    +   N +L   +   D  
Sbjct: 132 QKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLV 191

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            A  +F +I + +  ++N MI G   A      +L L+ QM        NF      IS 
Sbjct: 192 VAQRVFDEIPQKDVISWNSMISGYARA-GDMEKALSLFQQMPE-----RNFASWNAMISG 245

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVS-HSLITMYARCGKLDSARKVFDEIRERDLVSW 188
                +  G    +  F   + + ++VS  ++I+ Y++CG +DSA ++FD++  +DL+ +
Sbjct: 246 Y----VEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLF 301

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           N+MI+ Y++    KEA++LF  M   +    PDE+TL SV+ +C  LGDL  G W+E ++
Sbjct: 302 NAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYM 361

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +  ++++ ++ +AL+D+Y KCG++  A  +F  +  KD+V + AMI     NG + +AI
Sbjct: 362 RRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAI 421

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLG----KWVDKY-----ASQRGLRHDIF 357
            LF+ M  A + P+ IT IG+L+A    G ++ G      + KY         G+  D+F
Sbjct: 422 KLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKKYNLVPSVDHYGIMVDLF 481

Query: 358 --CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              G + +AL++ + MP+      W A++ A     R H  +   E  ++      P+  
Sbjct: 482 GRAGRLQEALELIKSMPMQPHAGVWGALLLAC----RLHNNVEFGEIAAQHCFELEPDTT 537

Query: 415 TFIGVLSACVHAG 427
            +  +LS    +G
Sbjct: 538 GYCSLLSNIYASG 550


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 179/541 (33%), Positives = 283/541 (52%), Gaps = 25/541 (4%)

Query: 41  QQIHTQMLI-------NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGL 93
           + +H Q LI       + I   N L+   +       A  LF  +   N  ++NV++ G 
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 94  TTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152
                 +   L L+  M  L    P+ + +     +C++   +  G+  H  +FK GL  
Sbjct: 92  LHG-GNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVC 150

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEI---RERDLVSWNSMISGYSKMGYAKEAVELFG 209
             +V  +L+ MY+RC  ++ A +V D +      D+ S+NS+++   + G  +EAVE+  
Sbjct: 151 HQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLR 210

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
           RM +E    D +T V V+G C  + DL LG  V   +++  +  + ++GS LIDMYGKCG
Sbjct: 211 RMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCG 270

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            ++ AR VFD + N++VV W A++TAY QNG   E++ LF  M   G  P++ T   +L+
Sbjct: 271 EVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLN 330

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVS 378
           ACA I AL  G  +     + G ++ +             GSID +  VF DM   + ++
Sbjct: 331 ACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIIT 390

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           WNAMI   + +G   +AL +F+ M        PN VTFIGVLSA  H GLV EG    + 
Sbjct: 391 WNAMICGYSHHGLGKQALQVFQDMVS--AEECPNYVTFIGVLSAYSHLGLVKEGFYYLNH 448

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           +  +F + P  EHY+CMV L +RAG L EA +F++    K D +    LL AC   +N D
Sbjct: 449 LMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYD 508

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           + +R+ + +L+++  + G Y + S ++A  + WD    +R LMRE+ + K PG SW+ I 
Sbjct: 509 LGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIR 568

Query: 559 D 559
           +
Sbjct: 569 N 569


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 258/459 (56%), Gaps = 14/459 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNH-GVSVHSSVFKIG-LDEDDHVSHSLITMYARC 167
           M RLGL+P++FT+P  F + A+    +  G  +HS   + G L  D  VS + + MY + 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G+L  AR +F E+  R++V+WN++++     G   E +E +  +RE   LP+ ++  +  
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C     L LG+   GFVVK   +++  + ++++D YGKC     AR VFD M  ++ V
Sbjct: 121 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 180

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +W +M+ AYAQNG   EA   +   + +G  P    +   L+ CA +  L LG+ +   A
Sbjct: 181 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVA 240

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            +  +  +IF           CG ++DA ++F + P  N V+WNAMI   A  G A  AL
Sbjct: 241 VRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNAL 300

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
           L+F+ M + G  A PN +T + V+++C   GL  +G  LF+ M   FG+ P++EHY+C+V
Sbjct: 301 LVFDDMIRSGETA-PNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 359

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL  RAG   +A++ ++ MP +    V GALLGAC+    T++ +   + L E++  +SG
Sbjct: 360 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 419

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           N+V+ S +FA+   W ++  +R  M+  G+ K PGCSW+
Sbjct: 420 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWV 458



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 189/388 (48%), Gaps = 22/388 (5%)

Query: 35  PSTKTVQQIHTQMLINFIQKP--NFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNV 88
           P +    QIH+ + I F   P   F+    +D+         A  LF ++   N  A+N 
Sbjct: 25  PRSTIGPQIHS-LAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNA 83

Query: 89  MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           ++       +    +++ Y+ ++  G  P+  +    F +CA  + L+ G   H  V K 
Sbjct: 84  VMTNAVLDGRPL-ETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKC 142

Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
           G + D  V +S++  Y +C     AR VFD +  R+ VSW SM++ Y++ G  +EA   +
Sbjct: 143 GFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAY 202

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
              R     P +  + S L +C  L  L LG+ +    V++ +D N ++ SAL+DMYGKC
Sbjct: 203 LGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKC 262

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKITLIGV 327
           G +  A ++F     +++VTWNAMI  YA  G +  A+++F+ M  +G   P+ ITL+ V
Sbjct: 263 GCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNV 322

Query: 328 LSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTN 375
           +++C+  G    G  +     +++  +    H     D+    G  + A +V + MP+  
Sbjct: 323 ITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRP 382

Query: 376 EVS-WNAMISALAFNGRAHEALLLFERM 402
            +S W A++ A   +G+     +  E++
Sbjct: 383 SISVWGALLGACKMHGKTELGRIAAEKL 410


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/403 (37%), Positives = 237/403 (58%), Gaps = 13/403 (3%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
             +D A ++FD+I + D+V +N+M  GY++      A+ L  ++     LPD+ T  S+L
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  L  L  GK +    VK  +  N Y+   LI+MY  C  +  ARRVFD +    VV
Sbjct: 143 KACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVV 202

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
            +NA+IT+ A+N   NEA+ LF  ++ +G+ P  +T++  LS+CA +GALDLG+W+ +Y 
Sbjct: 203 AYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYV 262

Query: 348 SQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G            D++  CGS+DDA+ VF+DMP  +  +W+AMI A A +G   +A+
Sbjct: 263 KKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAI 322

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            +   M K     +P+++TF+G+L AC H GLV+EG   F  M+  +G++P  +HY CM+
Sbjct: 323 SMLREMKK--AKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMI 380

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL  RAG L EA  F++ +P K   I+   LL +C    N ++++ V+Q + E++ S+ G
Sbjct: 381 DLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGG 440

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +YVI S + A    WDD   +R +M +KG  K PGCS I +++
Sbjct: 441 DYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNN 483



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/416 (31%), Positives = 222/416 (53%), Gaps = 30/416 (7%)

Query: 10  RHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----- 64
           RH   T   +P      +LSL+ KC S + ++QI    +      P  +L ++I+     
Sbjct: 23  RHEPNTAALEPP--SSSILSLIPKCTSLRELKQIQAYTIKTHQNNPT-VLTKLINFCTSN 79

Query: 65  --LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLGLKPDN 119
             +   ++A  +F +I +P+   FN M RG    + ++   L+   L  Q+   GL PD+
Sbjct: 80  PTIASMDHAHRMFDKIPQPDIVLFNTMARG----YARFDDPLRAILLCSQVLCSGLLPDD 135

Query: 120 FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE 179
           +T+  +  +CA L AL  G  +H    K+G+ ++ +V  +LI MY  C  +D+AR+VFD+
Sbjct: 136 YTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDK 195

Query: 180 IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
           I E  +V++N++I+  ++     EA+ LF  ++E    P ++T++  L SC  LG L LG
Sbjct: 196 IGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLG 255

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           +W+  +V KN  D    + +ALIDMY KCG+L  A  VF  M  +D   W+AMI AYA +
Sbjct: 256 RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATH 315

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH 354
           G  ++AI +   MK A V PD+IT +G+L AC+  G ++ G         +Y     ++H
Sbjct: 316 GHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKH 375

Query: 355 -----DIF--CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERM 402
                D+    G +++A K  +++P+    + W  ++S+ + +G    A L+ +R+
Sbjct: 376 YGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRI 431


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 244/456 (53%), Gaps = 18/456 (3%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P +  Y F+  +   L  L+    VH+ +   G      +   L+ +    G +   R++
Sbjct: 10  PHSPAYNFLLQAGPRLYLLH---QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQI 66

Query: 177 FDEIRERDLVSWNSMISGYSK-MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           F  +   D   + S+I   SK   ++  ++  + RM      P   T  SV+ SC DL  
Sbjct: 67  FLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSA 126

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G+ V G V+ +   L+ Y+ +AL+ +YGKCG L+ AR+VFD +  + +V WN+MI+ 
Sbjct: 127 LKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISG 186

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           Y QNG + EAI LF+RMK  GV PD  T + VLSACA +GA  LG WV +Y    GL  +
Sbjct: 187 YEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLN 246

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG++  A +VF+ M   N V+W AMIS    NG   +A+ LF  M +
Sbjct: 247 VVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G    PN +TF+ VLSAC HAGLV+EGRRLF  +   + L+P  EH  C+VD+  RAG 
Sbjct: 307 NG--LFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGL 364

Query: 465 LSEAWDFV-ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
           L EA++F+ E +PE     +L A+LGAC+  KN D+  +V + LL  E  N  +YVI S 
Sbjct: 365 LDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSN 424

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A     D    +R  M  K + K  G S + +D 
Sbjct: 425 IYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQ 460



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/409 (35%), Positives = 232/409 (56%), Gaps = 20/409 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK----DFNYASLLFHQISRPNEYA 85
           LL+  P    + Q+H  ++++   +   LL ++++L       +Y   +F  +  P+ + 
Sbjct: 18  LLQAGPRLYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFL 77

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           F  +I+  + +     +SL  Y +M    + P N+T+  V  SCA+L AL HG  VH  V
Sbjct: 78  FTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHV 137

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
              G   D +V  +L+ +Y +CG L +ARKVFD+IRER +V+WNSMISGY + G+AKEA+
Sbjct: 138 LVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAI 197

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            LF RM+E    PD  T VSVL +C  LG   LG WV  ++V N +DLN  +G++LI+MY
Sbjct: 198 GLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMY 257

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            +CG +  AR VFD+M  ++VV W AMI+ Y  NG  ++A+ LF+ M+  G+ P+ IT +
Sbjct: 258 IRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFV 317

Query: 326 GVLSACASIGALDLGKWV-----DKYASQRGLRHDIF-------CGSIDDALK-VFEDMP 372
            VLSACA  G ++ G+ +     ++Y    G+ H++         G +D+A   + E++P
Sbjct: 318 AVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIP 377

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
              E    A+++A+    + H+   L  ++++   AA P +     +LS
Sbjct: 378 ---ENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILS 423


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 177/495 (35%), Positives = 256/495 (51%), Gaps = 68/495 (13%)

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEIRERD 184
           F SC     L     +H+   K G  +D   +  +I   A   + +D AR VF ++ E +
Sbjct: 26  FTSCKTPRDLKQ---LHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPN 82

Query: 185 LVSWNSMISGYSKMG---YAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGK 240
              WN+++   ++        EA+ LF  M  +    P+  T  SVL +C     L  GK
Sbjct: 83  CFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGK 142

Query: 241 WVEGFVVK-----------------------------------------------NKMDL 253
            + G +VK                                                K D 
Sbjct: 143 QIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDG 202

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + + +ID   + G +  A+ +FD M  + VV+WN MI+ YAQNG   EAI LF  M+
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            + ++P+ +TL+ VL A A IGAL+LGKW+  YA +  +  D             CGSID
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSID 322

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +AL+VFE +P  N ++W+A+I A A +GRA +A++ F  M K G    PNDV +IG+LSA
Sbjct: 323 EALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG--VTPNDVAYIGILSA 380

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLV+EGR  F  M    GL P+ EHY CMVDL  RAGHL EA + +  MP + D++
Sbjct: 381 CSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDV 440

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +  ALLGAC+  KN  + +RV + L+E+   +SG+YV  S ++A+L  W+  A++R  M+
Sbjct: 441 IWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMK 500

Query: 543 EKGVSKTPGCSWIGI 557
              + K PGCSWI I
Sbjct: 501 GMDIRKDPGCSWIEI 515



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/479 (28%), Positives = 238/479 (49%), Gaps = 75/479 (15%)

Query: 3   LRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML-INFIQKP----NF 57
           + +  Y+ +  F     P L+  K  +    C + + ++Q+H   +    IQ P      
Sbjct: 1   MNSTIYNPNRTFNFSPQPPLILSKPFT---SCKTPRDLKQLHAIFIKTGQIQDPLTAAEV 57

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY--SHSLKLYYQMKRLG- 114
           +       +D +YA  +F Q+  PN + +N ++R L     ++  S +L L+  M   G 
Sbjct: 58  IKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGR 117

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC------- 167
           +KP+ FT+P V  +CA    L  G  +H  + K G  ED+ V  +L+ MY  C       
Sbjct: 118 VKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAY 177

Query: 168 ----------------------------------------GKLDSARKVFDEIRERDLVS 187
                                                   G + SA+ +FDE+ +R +VS
Sbjct: 178 SLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVS 237

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN MISGY++ G+  EA+ LF  M+     P+ +TLVSVL +   +G L LGKW+  +  
Sbjct: 238 WNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAG 297

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           KNK++++  +GSAL+DMY KCG++  A +VF+ +  ++ +TW+A+I A+A +G + +AI+
Sbjct: 298 KNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF 357
            F+ M  AGV P+ +  IG+LSAC+  G ++ G+      V     Q  + H     D+ 
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417

Query: 358 --CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
              G +++A ++  +MP+  ++V W A++ A     + H+ L + ER+++      P+D
Sbjct: 418 GRAGHLEEAEELIRNMPIEPDDVIWKALLGAC----KMHKNLKMGERVAETLMELAPHD 472


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 281/505 (55%), Gaps = 16/505 (3%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F+ A  +F  +   +    N MI     A      +++++  +   G +P ++T+  +  
Sbjct: 219 FDVAEKVFDSMGFKDIRCLNFMILEYGRAGNG-GKAIEVFKNLLNDGFEPTDYTFTNIIS 277

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +C   L +  G  +    FK G   +  V +++ITMY   G    A ++F  + E++L+S
Sbjct: 278 TCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLIS 337

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           W ++ISGYS+ GY K+AV+ F  + +E  +  D   L ++L  C D  +L LG  + GFV
Sbjct: 338 WTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFV 397

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN-GLSNEA 305
           +K     +  + +AL+D+Y KC  L  AR VFD + NK + ++NA++  + ++ G   + 
Sbjct: 398 MKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDP 457

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           ++LFN+++ AGV PD +T   +LS  A+  +L+ G+    Y  + G   +I         
Sbjct: 458 MILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISM 517

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CGSI+DA ++F  M   + +SWNA+ISA A +G+A ++L LFE M ++G    P++ 
Sbjct: 518 YAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKSLFLFEEMKRKG--FDPDEF 575

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T + +L AC ++GL  +G  LF+LM   +G+ P  EHY+CM DL  RAG+LSEA D ++R
Sbjct: 576 TILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIKR 635

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
            P     ++   L+  C+   N +  +   + LL++    +G+Y++ S ++A+ KM D++
Sbjct: 636 SPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSYILVSNMYASEKMSDEA 695

Query: 535 AKMRALMREKGVSKTPGCSWIGIDD 559
           AK+R +M +    K  G SWI ID+
Sbjct: 696 AKVRKVMNDLKFRKEAGSSWIEIDN 720



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 163/344 (47%), Gaps = 17/344 (4%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G +VHS + K G  +D    ++++ +Y +  +LD A+KVFD +R R+ ++W S+I GY +
Sbjct: 86  GQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 198 MGYAKEAVELFGRMRE--EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
               + A  + G M +  E F  +E T   +L +C    D +LG+ +  FV+K+  D N 
Sbjct: 146 DNDFQSAFSIAGDMHKFGENF--NEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENV 203

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           ++G++LI MY K G    A +VFD+M  KD+   N MI  Y + G   +AI +F  +   
Sbjct: 204 FVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLND 263

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI-----------DDA 364
           G  P   T   ++S C     ++ GK +   A + G   +   G+             +A
Sbjct: 264 GFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEA 323

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++F  M   N +SW A+IS  + +G   +A+  F  +  E G    +      +L  C 
Sbjct: 324 ERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELG-INFDSTLLTAILDCCS 382

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
               ++ G ++   +    G        + +VDLYA+   L  A
Sbjct: 383 DCNNLELGLQIHGFV-MKLGCACDVNVATALVDLYAKCEKLQSA 425



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 14/255 (5%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D +LG+ V  ++VK     + + G+ ++++Y K   L  A++VFD M  ++ +TW ++I 
Sbjct: 82  DFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIK 141

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            Y ++     A  +   M   G N ++ T   +L AC+S     LG+ +  +  + G   
Sbjct: 142 GYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDE 201

Query: 355 DIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           ++F G+            D A KVF+ M   +    N MI      G   +A+ +F+ + 
Sbjct: 202 NVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLL 261

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +G    P D TF  ++S C     V+EG++L  L +  +G + ++   + ++ +Y  +G
Sbjct: 262 NDG--FEPTDYTFTNIISTCNGDLGVEEGKQLQGL-AFKYGFLSETSVGNAIITMYGNSG 318

Query: 464 HLSEAWDFVERMPEK 478
              EA      M EK
Sbjct: 319 MPKEAERMFSSMSEK 333


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 287/516 (55%), Gaps = 23/516 (4%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+   +     + A  +F  +   N  ++  MI  +  +   YS ++KL+  M   G+
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGH-YSFAVKLFDGMIAEGI 346

Query: 116 KPDNFTYPFVFISCANL---LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
            P+  TY  V  + A+L     L+ G  +HS +   G+D D  V +SLI MYAR G L  
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 173 ARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           AR+VFD I E  + +VS+ +MI+ Y+  G+ ++A+E+F  M      P+EIT  +VL +C
Sbjct: 407 AREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAAC 466

Query: 231 GDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
             +GDL  G W+   ++++ +D  + +  ++L+DMY KCG L  A RVF+ M  KD+V W
Sbjct: 467 VAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAW 526

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
             +I A  Q+G +  A+ L++RM  +G++PD  TL  +L ACA++G L +G+ + + A +
Sbjct: 527 TTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALR 586

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
             L  D             CGS++ A +++     ++  +W +M++A +  G A  AL L
Sbjct: 587 SKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALEL 646

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           +  M  EG   RPN+VTFI VL +C  AGLV EGR  F  ++S +G  P +EH+ CMVD+
Sbjct: 647 YAEMESEG--VRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDV 704

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518
             RAG L +A + ++ MP   DEI   +LL +C+   + ++  R  + LLE++  ++  +
Sbjct: 705 LGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPESTSQF 764

Query: 519 VISSKIFANLKMWDDSAKMR---ALMREKGVSKTPG 551
           V  S+I+A      D  +++   AL R+  V +T G
Sbjct: 765 VALSQIYAAAGRNSDIDEIKRELALRRQIEVHRTTG 800



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 198/375 (52%), Gaps = 26/375 (6%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V ++LI+MY RCGKLD A +VF ++  R++VSW SMI+  ++ G+   AV+LF  M  E 
Sbjct: 286 VLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEG 345

Query: 216 FLPDEITLVSVLGSCGDLG-DLVL--GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
             P+E T  SV+ +   LG D +L  G+ +   +  + +D +  + ++LI+MY + G L 
Sbjct: 346 INPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLA 405

Query: 273 PARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
            AR VFD+++  +K VV++  MI AYA NG   +A+ +F  M   GV P++IT   VL+A
Sbjct: 406 EAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAA 465

Query: 331 CASIGALDLGKWVDKYASQRGL-RHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
           C +IG L  G W+ +   + GL   D F           CG +  A +VFE M   + V+
Sbjct: 466 CVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVA 525

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W  +I+A   +G    AL L++RM + G    P+  T   +L AC + G +  G ++   
Sbjct: 526 WTTIIAANVQSGNNRAALDLYDRMLQSG--IHPDIATLSTLLVACANLGDLAMGEKIHRQ 583

Query: 439 MSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
              S   + +  H+ + +  +YA+ G L +A     R     D     ++L A  +Q   
Sbjct: 584 ALRS--KLEQDAHFQNALAAMYAKCGSLEKATRLYRRC-RGSDVATWTSMLAAHSQQGLA 640

Query: 498 DVSQRVMQLLLEIES 512
            V+   ++L  E+ES
Sbjct: 641 SVA---LELYAEMES 652



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 258/530 (48%), Gaps = 36/530 (6%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII-----DLKDFNYASLLFHQISR 80
           +LL++C + + +   +++H  ++   + + N LL  ++       + F+ A  LF  +  
Sbjct: 55  NLLRQCGNQRALDHGRRVHAHIVSRRLAR-NALLGELVFQMYARCRCFDTAIALFDAMPD 113

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              + +NV+++    A  +   +L+LY +M     +P    + +  ++C  +  L  G S
Sbjct: 114 RRPFCWNVLMKEFLAA-DRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRS 172

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V   G   +  +  +L+TMYA+CG++D A   FD+ RE     WN+++S  +  G+
Sbjct: 173 IHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGH 231

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            + A+ELF +M  E+    + +    LG+C   G L  G  +   +          + +A
Sbjct: 232 HRRAIELFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNA 289

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           LI MY +CG L  A RVF  M +++VV+W +MI A AQ+G  + A+ LF+ M   G+NP+
Sbjct: 290 LISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPN 349

Query: 321 KITLIGVLSACASIGA---LDLGKWVDKYASQRGLRHDIFC-----------GSIDDALK 366
           + T   V+SA A +G    LD G+ +    +  G+  D              G + +A +
Sbjct: 350 EKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEARE 409

Query: 367 VFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           VF+ +   ++  VS+  MI+A A NG   +AL +F  M+  G A  PN++TF  VL+ACV
Sbjct: 410 VFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVA--PNEITFATVLAACV 467

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
             G +  G  + + M  S         Y+ +VD+YA+ G L  A    E M  K D +  
Sbjct: 468 AIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTK-DLVAW 526

Query: 485 GALLGACQKQKNT----DVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
             ++ A  +  N     D+  R++Q  +  + +     +++     +L M
Sbjct: 527 TTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAM 576



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 185/375 (49%), Gaps = 18/375 (4%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           Y  +   C N  AL+HG  VH+ +    L  +  +   +  MYARC   D+A  +FD + 
Sbjct: 53  YANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMP 112

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +R    WN ++  +      ++ +EL+ RM  E   P     +  + +CG + DL  G+ 
Sbjct: 113 DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRS 172

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +  + V     +N  + SAL+ MY +CG +  A   FD         WNA+++A A  G 
Sbjct: 173 IH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGH 231

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF--- 357
              AI LF +M+    + D+   I + +  A+       +  DK  S+  G R  +    
Sbjct: 232 HRRAIELFFQMEQHQCS-DRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNAL 290

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG +D+AL+VF DMP  N VSW +MI+A+A +G    A+ LF+ M  EG    P
Sbjct: 291 ISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEG--INP 348

Query: 412 NDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           N+ T+  V+SA  H G   ++D GR++   +++S G+       + ++++YAR+G L+EA
Sbjct: 349 NEKTYASVVSAIAHLGRDAILDRGRKIHSQITAS-GIDADPIVQNSLINMYARSGLLAEA 407

Query: 469 WDFVERMPEKVDEIV 483
            +  + + E    +V
Sbjct: 408 REVFDSILENSKTVV 422


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 289/549 (52%), Gaps = 27/549 (4%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L  C   + ++   Q+H+ ++ +  +   F+   ++D+         A   F  I   
Sbjct: 455 SILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNR 514

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++N +I G     +    +  ++ +M   G+ PD  +   +   CANL AL  G  V
Sbjct: 515 DNVSWNAIIVGYVQE-EDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQV 573

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + K GL    +   SLI MY +CG +++AR VF  +  R +VS N++I+GY++    
Sbjct: 574 HCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV 633

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGS 259
            EA++LF  M+ E   P EIT  S+L +C     L LG+ +   + K  +  D +F +G 
Sbjct: 634 -EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDF-LGV 691

Query: 260 ALIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +L+ MY        A  +F +    K  + W A+I+ + QNG S EA+ L+  M      
Sbjct: 692 SLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNAR 751

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           PD+ T   VL AC+ + +L  G+ +       GL  D             CG +  +++V
Sbjct: 752 PDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQV 811

Query: 368 FEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           FE+M   N+V SWN+MI   A NG A  AL +F+ M       RP+DVTF+GVL+AC HA
Sbjct: 812 FEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHT--RIRPDDVTFLGVLTACSHA 869

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           G V EGR +FD+M  S+ ++P+ +H +CM+DL  R G L EA +F++++  + + ++   
Sbjct: 870 GRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWAT 929

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC+   +    +R  + L+E+E  NS  YV+ S I+A    WD+   +R  MREKG+
Sbjct: 930 LLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGL 989

Query: 547 SKTPGCSWI 555
            K PGCSWI
Sbjct: 990 RKLPGCSWI 998



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 227/393 (57%), Gaps = 15/393 (3%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           ++   + L   + A  LF Q+   N  A+NVMI G          ++  +  M + G+K 
Sbjct: 289 VITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDI-EAIDFFKNMWKTGVKS 347

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
              T   V  + A+L ALN+G+ VH+   K GL+ + +V  SLI MYA+C K+++A+KVF
Sbjct: 348 TRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVF 407

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           D + ER+LV WN+M+ GY++ GYA + ++LF  MR   F PDE T  S+L +C  L  L 
Sbjct: 408 DALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLE 467

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
           +G+ +  F++K+  + N ++ + L+DMY KCGAL  AR+ F+ + N+D V+WNA+I  Y 
Sbjct: 468 MGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYV 527

Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
           Q    +EA  +F RM   G+ PD+++L  +LS CA++ AL+ G+ V  +  + GL+  ++
Sbjct: 528 QEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLY 587

Query: 358 -----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                      CG+I+ A  VF  MP  + VS NA+I+  A N    EA+ LF+ M  EG
Sbjct: 588 AGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEG 646

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
               P+++TF  +L AC     ++ GR++  L+
Sbjct: 647 --LNPSEITFASLLDACTGPYKLNLGRQIHCLI 677



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 219/442 (49%), Gaps = 44/442 (9%)

Query: 72  SLLFHQISRPNEYAFNVMIRGL--TTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFIS 128
           SL FH  S      F+ + R +  T+  + ++H LK+  Q  +R+ ++     +PF    
Sbjct: 41  SLSFHHQSN-----FSTIQRQVNQTSEHKIFTHLLKICLQQCQRIKIR-----HPFDETP 90

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
                A     ++H+   K G      +  +++ +YA+CG ++ A K F+++ +RD+++W
Sbjct: 91  QRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAW 150

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           NS++S YS+ G  ++ +  FG ++     P++ T   VL SC  L D+ LGK V   V+K
Sbjct: 151 NSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIK 210

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              + N +   +LIDMY KCG+LV AR++FDA+V+ D V+W AMI  Y Q GL  EA+ +
Sbjct: 211 MGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKV 270

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368
           F  M+  G+ PD++  + V++AC  +G L                        DDA  +F
Sbjct: 271 FEDMQKLGLVPDQVAFVTVITACVGLGRL------------------------DDACDLF 306

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
             MP TN V+WN MIS     G   EA+  F+ M K G   +    T   VLSA      
Sbjct: 307 VQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTG--VKSTRSTLGSVLSAIASLEA 364

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           ++ G  L    +   GL       S ++++YA+   +  A    + + E+ + ++  A+L
Sbjct: 365 LNYG-LLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDER-NLVLWNAML 422

Query: 489 GACQKQKNTDVSQRVMQLLLEI 510
           G          + +VM+L  E+
Sbjct: 423 GG---YAQNGYASKVMKLFSEM 441



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 202/419 (48%), Gaps = 50/419 (11%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +  P+  ++  MI G          +LK++  M++LGL PD   +  V  +C 
Sbjct: 236 ARKIFDAVVDPDTVSWTAMIAGYVQVGLP-EEALKVFEDMQKLGLVPDQVAFVTVITACV 294

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L                                   G+LD A  +F ++   ++V+WN 
Sbjct: 295 GL-----------------------------------GRLDDACDLFVQMPNTNVVAWNV 319

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MISG+ K G   EA++ F  M +        TL SVL +   L  L  G  V    +K  
Sbjct: 320 MISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQG 379

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           ++ N Y+GS+LI+MY KC  +  A++VFDA+  +++V WNAM+  YAQNG +++ + LF+
Sbjct: 380 LNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFS 439

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+  G  PD+ T   +LSACA +  L++G+ +  +  +    +++F           CG
Sbjct: 440 EMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCG 499

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           ++++A + FE +   + VSWNA+I          EA  +F RM  +G A  P++V+   +
Sbjct: 500 ALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIA--PDEVSLASI 557

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           LS C +   +++G ++   +  S GL       S ++D+Y + G +  A      MP +
Sbjct: 558 LSGCANLQALEQGEQVHCFLVKS-GLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSR 615


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/485 (34%), Positives = 268/485 (55%), Gaps = 30/485 (6%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           S   +  M+ L + P+   +P +  +   L       S+H+   ++GLD D +++++LI 
Sbjct: 94  SFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALIN 153

Query: 163 MYAR---CGK------------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
            YA+    GK            +D  +KVFD +  RD+VSWN++I+G+++ G   EA+++
Sbjct: 154 TYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDM 213

Query: 208 FGRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
              M +  +  PD  TL S+L    +  D+  GK + G+ V+N  D + ++GS+LIDMY 
Sbjct: 214 VREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYA 273

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           KC  L  + R F  +  KD ++WN++I    QNG  +  +  F RM    V P  ++   
Sbjct: 274 KCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSS 333

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
           V+ ACA + AL LG+ +     + G   + F           CG+I  A  VF+ +   +
Sbjct: 334 VIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRD 393

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            V+W A+I   A +G A +A+ LFE M ++G   RP  V F+ VL+AC HAGLVDEG R 
Sbjct: 394 MVAWTAIIMGCAMHGHALDAVSLFENMLEDG--VRPCYVAFMAVLTACSHAGLVDEGWRY 451

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQ 494
           F+ M   FG+ P  EHY+ + DL  RAG L EA+DF+  M   +    V   LL AC+  
Sbjct: 452 FNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAH 511

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           K+ +++++V+  LL ++S N G YV+ S I++  + W D+A++R  MR+KG+ KTP CSW
Sbjct: 512 KSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSW 571

Query: 555 IGIDD 559
           I + +
Sbjct: 572 IEVGN 576



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 172/334 (51%), Gaps = 22/334 (6%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHS 143
           ++N +I G       Y  +L +  +M + G LKPD+FT   +    A  + +N G  +H 
Sbjct: 193 SWNTVIAGFAQNGM-YVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG 251

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              + G D D  +  SLI MYA+C +L+ + + F  +  +D +SWNS+I+G  + G    
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDR 311

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            +  F RM +E   P  ++  SV+ +C  L  L LG+ + G +V+   D N ++ S+L+D
Sbjct: 312 GLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVD 371

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KCG +  AR VFD +  +D+V W A+I   A +G + +A+ LF  M   GV P  + 
Sbjct: 372 MYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVA 431

Query: 324 LIGVLSACASIGALDLGKWVDKYASQR------GLRH-----DIF--CGSIDDALKVFED 370
            + VL+AC+  G +D G W    + +R      GL H     D+    G +++A     +
Sbjct: 432 FMAVLTACSHAGLVDEG-WRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISN 490

Query: 371 MPVTNEVS--WNAMISALAFNGRAHEALLLFERM 402
           M         W+ +++A     RAH+++ L E++
Sbjct: 491 MRGVQPTGSVWSILLAAC----RAHKSVELAEKV 520


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 259/491 (52%), Gaps = 45/491 (9%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           + R   +P    Y  +  +C    AL  G  VH+            +S+ L+ MYA+CG 
Sbjct: 78  LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGS 137

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM------------------ 211
           L  A+ +FDE+  RDL SWN+MI GY+K+G  ++A +LF  M                  
Sbjct: 138 LVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTH 197

Query: 212 --------------REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
                         R E    ++ TL S L +   +  L LGK + G++++ +++L+  +
Sbjct: 198 NQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVV 257

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            SAL+D+YGKCG+L  AR +FD M ++DVV+W  MI    ++G   E  +LF  +  +GV
Sbjct: 258 WSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGV 317

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P++ T  GVL+ACA   A  LGK V  Y    G     F           CG+   A +
Sbjct: 318 RPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARR 377

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF +M   + VSW ++I   A NG+  EAL  FE + + G   +P+ VT++GVLSAC HA
Sbjct: 378 VFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSG--TKPDQVTYVGVLSACTHA 435

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLVD+G   F  +    GL+  ++HY+C++DL AR+G   EA + ++ MP K D+ +  +
Sbjct: 436 GLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWAS 495

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLG C+   N ++++R  + L EIE  N   Y+  + I+AN  +W + A +R  M   G+
Sbjct: 496 LLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGI 555

Query: 547 SKTPGCSWIGI 557
            K PG SWI I
Sbjct: 556 VKKPGKSWIEI 566



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/425 (30%), Positives = 210/425 (49%), Gaps = 20/425 (4%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
            +  +LL +  KC S    Q +  +M    +   N +++    L     A  LF ++ + 
Sbjct: 123 FISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR 182

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN-FTYPFVFISCANLLALNHGVS 140
           + +++N  I G  T  Q    +L+L+  M+R      N FT      + A +  L  G  
Sbjct: 183 DNFSWNAAISGYVTHNQP-REALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE 241

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  + +  L+ D+ V  +L+ +Y +CG LD AR +FD++++RD+VSW +MI    + G 
Sbjct: 242 IHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGR 301

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +E   LF  + +    P+E T   VL +C D     LGK V G+++    D   +  SA
Sbjct: 302 REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISA 361

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ MY KCG    ARRVF+ M   D+V+W ++I  YAQNG  +EA+  F  +  +G  PD
Sbjct: 362 LVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPD 421

Query: 321 KITLIGVLSACASIGALDLG-KWVDKYASQRGLRH--DIFCGSID---------DALKVF 368
           ++T +GVLSAC   G +D G ++      + GL H  D +   ID         +A  + 
Sbjct: 422 QVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENII 481

Query: 369 EDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHA 426
           ++MPV  ++  W +++       R H  L L +R +K      P N  T+I + +   +A
Sbjct: 482 DNMPVKPDKFLWASLLGGC----RIHGNLELAKRAAKALYEIEPENPATYITLANIYANA 537

Query: 427 GLVDE 431
           GL  E
Sbjct: 538 GLWSE 542



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 163/379 (43%), Gaps = 54/379 (14%)

Query: 178 DEIRERDLVS----WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           + +  +DLVS    +   +    +    KEAVEL  R    +  P      +++ +C   
Sbjct: 44  NHLNPKDLVSEDNKFEEAVDVLCQQKRVKEAVELLHRT---DHRPSARVYSTLIAACVRH 100

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
             L LG+ V      +      ++ + L+DMY KCG+LV A+ +FD M ++D+ +WN MI
Sbjct: 101 RALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMI 160

Query: 294 TAYAQNGLSNEAIMLFNRM--------------------------------KYAGVNPDK 321
             YA+ G   +A  LF+ M                                ++   + +K
Sbjct: 161 VGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNK 220

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL   L+A A+I  L LGK +  Y  +  L  D             CGS+D+A  +F+ 
Sbjct: 221 FTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQ 280

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   + VSW  MI     +GR  E  LLF  + + G   RPN+ TF GVL+AC       
Sbjct: 281 MKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSG--VRPNEYTFAGVLNACADHAAEH 338

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
            G+ +   M  + G  P S   S +V +Y++ G+   A      M  + D +   +L+  
Sbjct: 339 LGKEVHGYMMHA-GYDPGSFAISALVHMYSKCGNTRVARRVFNEM-HQPDLVSWTSLIVG 396

Query: 491 CQKQKNTDVSQRVMQLLLE 509
             +    D +    +LLL+
Sbjct: 397 YAQNGQPDEALHFFELLLQ 415



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 122/291 (41%), Gaps = 46/291 (15%)

Query: 11  HLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNY 70
           +L  TELN   ++   LL L  KC S    + I  QM    +     ++ R  +      
Sbjct: 245 YLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREE 304

Query: 71  ASLLFHQI----SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
             LLF  +     RPNEY                                    T+  V 
Sbjct: 305 GFLLFRDLMQSGVRPNEY------------------------------------TFAGVL 328

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +CA+  A + G  VH  +   G D       +L+ MY++CG    AR+VF+E+ + DLV
Sbjct: 329 NACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLV 388

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF- 245
           SW S+I GY++ G   EA+  F  + +    PD++T V VL +C   G  ++ K +E F 
Sbjct: 389 SWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAG--LVDKGLEYFH 446

Query: 246 VVKNKMDLNFYMG--SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMI 293
            +K K  L       + +ID+  + G    A  + D M V  D   W +++
Sbjct: 447 SIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLL 497


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/500 (33%), Positives = 268/500 (53%), Gaps = 12/500 (2%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A L+       N  ++  +I GL      +S +L  +++M+R G+ P++FT+P  F + A
Sbjct: 11  ARLVLRLTPARNVVSWTSLISGLAQNGH-FSTALVEFFEMRREGVVPNDFTFPCAFKAVA 69

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L     G  +H+   K G   D  V  S   MY +    D ARK+FDEI ER+L +WN+
Sbjct: 70  SLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNA 129

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
            IS     G  +EA+E F   R  +  P+ IT  + L +C D   L LG  + G V+++ 
Sbjct: 130 FISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSG 189

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            D +  + + LID YGKC  +  +  +F  M  K+ V+W +++ AY QN    +A +L+ 
Sbjct: 190 FDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYL 249

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           R +   V      +  VLSACA +  L+LG+ +  +A +  +   IF           CG
Sbjct: 250 RSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCG 309

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            I+D+ + F++MP  N V+ N++I   A  G+   AL LFE M+  G    PN +TF+ +
Sbjct: 310 CIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSL 369

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC  AG V+ G ++FD M S++G+ P +EHYSC+VD+  RAG +  A++F+++MP + 
Sbjct: 370 LSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQP 429

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
              V GAL  AC+      +     + L +++  +SGN+V+ S  FA    W ++  +R 
Sbjct: 430 TISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVRE 489

Query: 540 LMREKGVSKTPGCSWIGIDD 559
            ++  G+ K  G SWI + +
Sbjct: 490 ELKGVGIKKGAGYSWITVKN 509



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 169/369 (45%), Gaps = 17/369 (4%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY++    +SAR V      R++VSW S+ISG ++ G+   A+  F  MR E  +P++ T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
                 +   L   V GK +    VK    L+ ++G +  DMY K      AR++FD + 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +++ TWNA I+    +G   EAI  F   +    +P+ IT    L+AC+    L+LG  
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +     + G   D+            C  I  +  +F +M   N VSW ++++A   N  
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             +A +L+ R  K+      +D     VLSAC     ++ GR +     +    + ++  
Sbjct: 241 DEKASVLYLRSRKD--IVETSDFMISSVLSACAGMAGLELGRSIH--AHAVKACVERTIF 296

Query: 452 Y-SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
             S +VD+Y + G + ++    + MPEK + +   +L+G    Q   D++  + + +   
Sbjct: 297 VGSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMALALFEEMAPR 355

Query: 511 ESSNSGNYV 519
               + NY+
Sbjct: 356 GCGPTPNYM 364


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 265/472 (56%), Gaps = 16/472 (3%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
            +LKL+ QM+  G+KP+ FT+  V    A   A+  GV VH+ V K GLD    V +S++
Sbjct: 176 QALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMV 235

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
            MY++   +  A+ VFD +  R+ VSWNSMI+G+   G   EA ELF RMR E     + 
Sbjct: 236 NMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQT 295

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
              +V+  C ++ ++   K +   V+KN  D +  + +AL+  Y KC  +  A ++F  M
Sbjct: 296 IFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM 355

Query: 282 VN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACAS-IGALD 338
              ++VV+W A+I+ Y QNG ++ A+ LF +M+   GV P++ T   VL+ACA+   +++
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVE 415

Query: 339 LGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALA 387
            GK     + + G  + +             G+I+ A +VF+     + VSWN+MIS  A
Sbjct: 416 QGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYA 475

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   ++L +FE M  +      + +TFIGV+SAC HAGLV+EG+R FDLM   + ++P
Sbjct: 476 QHGCGKKSLKIFEEMRSKN--LELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVP 533

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             EHYSCMVDLY+RAG L +A D + +MP      +   LL AC+   N  + +   + L
Sbjct: 534 TMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKL 593

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           + ++  +S  YV+ S I+A    W + AK+R LM  K V K  G SWI + +
Sbjct: 594 ISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKN 645



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 195/388 (50%), Gaps = 13/388 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+  ++R G   D  +   V   C  L     G  VH    K G  ED  V  SL+ 
Sbjct: 76  ALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVD 135

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY +   ++   +VFDE+R +++VSW S+++GY + G  ++A++LF +M+ E   P+  T
Sbjct: 136 MYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFT 195

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
             +VLG     G +  G  V   V+K+ +D   ++G+++++MY K   +  A+ VFD+M 
Sbjct: 196 FAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME 255

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           N++ V+WN+MI  +  NGL  EA  LF RM+  GV   +     V+  CA+I  +   K 
Sbjct: 256 NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQ 315

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDM-PVTNEVSWNAMISALAFNG 390
           +     + G   D+            C  IDDA K+F  M  V N VSW A+IS    NG
Sbjct: 316 LHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNG 375

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           R   A+ LF +M +E G   PN+ TF  VL+AC       E  + F   S   G      
Sbjct: 376 RTDRAMNLFCQMRREEG-VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALC 434

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             S +V +YA+ G++  A +  +R  ++
Sbjct: 435 VSSALVTMYAKRGNIESANEVFKRQVDR 462



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 13/264 (4%)

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           ++++FDE  ++ L   N ++  +S+    KEA+ LF  +R      D  +L  VL  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           L D ++GK V    +K     +  +G++L+DMY K  ++    RVFD M  K+VV+W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           +  Y QNGL+ +A+ LF++M+  G+ P+  T   VL   A+ GA++ G  V     + GL
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 353 RHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
              IF G+           + DA  VF+ M   N VSWN+MI+    NG   EA  LF R
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 402 MSKEGGAARPNDVTFIGVLSACVH 425
           M  EG   +     F  V+  C +
Sbjct: 285 MRLEG--VKLTQTIFATVIKLCAN 306


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 269/468 (57%), Gaps = 15/468 (3%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
            +++ +M    L PD+FT+  +    A L ++     VH       L  D  V+ +++++
Sbjct: 96  FRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSL 155

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           Y++   L  ARK+FD++ E+D V WN MI+ Y++ G   E +ELF  M       D  T 
Sbjct: 156 YSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTA 215

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
           + V+ S   L  +  GK     +++N  D    + ++LIDMY +C  L  A ++F+ M +
Sbjct: 216 LPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTD 275

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           K V++W+AMI  Y +NG S  A+ LF++MK  G+  D + +I +L A   IGAL+  K++
Sbjct: 276 KSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYL 335

Query: 344 DKYASQRGLRH-----------DIFCGSIDDALKVFEDMPVTNE--VSWNAMISALAFNG 390
             Y+ + GL                CGSI+ A ++FE+  + ++  + WN+MISA A +G
Sbjct: 336 HGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHG 395

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
              +   L+ RM  +   ++P+ VTF+G+L+ACV++GLV++G+  F  M+ S+G  P  E
Sbjct: 396 DWSQCFKLYNRM--KCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQE 453

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
           HY+CMV+L  RAG +SEA + V+ MP K D  V G LL AC+    + +++   + L+ +
Sbjct: 454 HYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINM 513

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           E  N+GNY++ S I+A    WD  AKMR+ +R KG+ K PGCSW+ I+
Sbjct: 514 EPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEIN 561



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 189/379 (49%), Gaps = 18/379 (4%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           + PD  TYPFV  SC++   +  G ++H  + K+G D  D V+ +L  MY  C + ++A 
Sbjct: 6   MHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAH 65

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAV-ELFGRMREEEFLPDEITLVSVLGSCGDL 233
           ++FD+   +DL  W S ++         E +  +FGRM  E+ +PD  T  ++L     L
Sbjct: 66  QLFDKRSVKDL-GWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGL 124

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
             + L K V    + +K+  +  + +A++ +Y K  +LV AR++FD M  KD V WN MI
Sbjct: 125 NSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMI 184

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
            AYA+ G   E + LF  M  +G+  D  T + V+S+ A +  +D GK    +  + G  
Sbjct: 185 AAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSD 244

Query: 354 H---------DIFCGS--IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                     D++C    +D A K+F  M   + +SW+AMI     NG++  AL LF +M
Sbjct: 245 SQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKM 304

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
             +G  A  + V  I +L A VH G ++  + L    S   GL       + ++  YA+ 
Sbjct: 305 KSDGIQA--DFVIMINILPAFVHIGALENVKYLHGY-SMKLGLTSLPSLNTALLITYAKC 361

Query: 463 GHLSEAWDFVERMPEKVDE 481
           G +  A    E   EK+D+
Sbjct: 362 GSIEMAQRLFEE--EKIDD 378



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 179/330 (54%), Gaps = 16/330 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   +   +N+MI        K +  L+L+  M R G++ D FT   V  S A
Sbjct: 165 ARKLFDKMPEKDRVVWNIMIAAYARE-GKPTECLELFKSMARSGIRSDLFTALPVISSIA 223

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  ++ G   H+ + + G D    V +SLI MY  C  LDSA K+F+ + ++ ++SW++
Sbjct: 224 QLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSA 283

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI GY K G +  A+ LF +M+ +    D + ++++L +   +G L   K++ G+ +K  
Sbjct: 284 MIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLG 343

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVF--DAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           +     + +AL+  Y KCG++  A+R+F  + + +KD++ WN+MI+A+A +G  ++   L
Sbjct: 344 LTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKL 403

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHDIF------ 357
           +NRMK +   PD++T +G+L+AC + G ++ GK       + Y  Q    H         
Sbjct: 404 YNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLG 463

Query: 358 -CGSIDDALKVFEDMPVTNEVS-WNAMISA 385
             G I +A ++ ++MP+  +   W  ++SA
Sbjct: 464 RAGLISEAGELVKNMPIKPDARVWGPLLSA 493


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/561 (32%), Positives = 285/561 (50%), Gaps = 30/561 (5%)

Query: 24  REKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           R+ +  +L+   ++  +    Q+H  +L         L   +ID+     +   A  +F 
Sbjct: 4   RKMIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFG 63

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLAL 135
            +   N  ++  ++ G           L+L   M+ L  + P+ FT      +C  +  +
Sbjct: 64  GMPERNVVSWTALMVGFLRHGDARE-CLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDM 122

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             GV +H +  + G +    V++SL+ +Y++ G++  AR+VFD    R+LV+WN+MISGY
Sbjct: 123 AAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGY 182

Query: 196 SKMGYAKEAVELFGRMR-----EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +  G+ ++++ +F  M+     EE+  PDE T  S+L +CG LG    G  V   +V   
Sbjct: 183 AHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRG 242

Query: 251 MDL--NFYMGSALIDMYGKCGALVP-ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +    N  +  AL+DMY KC  L+P A +VF+ +  K+ + W  +I  +AQ G   EA+ 
Sbjct: 243 VSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAME 302

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF R   +GV  D   L  V+   A    ++ G+ V  Y  +     D+           
Sbjct: 303 LFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYH 362

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG  D+A + F ++P  N VSW AMI+ L  +G   EA+ +FE M  EG    P++V +
Sbjct: 363 KCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEG--VEPDEVAY 420

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC H+GLV+E RR F  +     L P++EHY+CMVDL  RAG LSEA D V  MP
Sbjct: 421 LALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMP 480

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
                 V   LL AC+  KN  V +   + LL I+  N  NYV+ S IFA    W +  +
Sbjct: 481 MAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQR 540

Query: 537 MRALMREKGVSKTPGCSWIGI 557
           +R  MR +G+ K  GCSW+ +
Sbjct: 541 VRGAMRRRGLRKQGGCSWVEV 561


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 286/510 (56%), Gaps = 34/510 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMI-----RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           A  LF ++ +P+  ++N +I     RG T        + +L+ +M+   L  D FT   +
Sbjct: 93  AHQLFDEMPQPDSVSYNTLIAAYARRGDTQP------AFQLFLEMREAFLDMDGFTLSGI 146

Query: 126 FISCANLLALNHGV--SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE- 182
             +C     +N G+   +H+     GLD    V ++LIT Y++ G L  AR++F  + E 
Sbjct: 147 ITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSED 202

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           RD VSWNSM+  Y +     +A+EL+  M     + D  TL SVL +  ++ DL+ G   
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYA-QNG 300
              ++K+    N ++GS LID+Y KCG  ++  R+VFD + N D+V WN MI+ Y+    
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
           LS+EA+  F +++  G  PD  +L+ V+SAC+++ +   G+ V   A +  +  +     
Sbjct: 323 LSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVN 382

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG++ DA  +F+ MP  N VS+N+MI+  A +G   ++L LF+RM + G  
Sbjct: 383 NALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFT 442

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             P ++TFI VL+AC H G V++G+  F++M   FG+ P++ H+SCM+DL  RAG LSEA
Sbjct: 443 --PTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEA 500

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
              +E +P         ALLGAC+   N +++ +    LL+++  N+  YV+ + I+++ 
Sbjct: 501 ERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDN 560

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
               D+A +R LMR++GV K PGCSWI ++
Sbjct: 561 GRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 187/398 (46%), Gaps = 55/398 (13%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV----------- 176
           +C     L  G S+H+   K  +    ++S+  + +Y++C +L +AR+V           
Sbjct: 17  TCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFS 76

Query: 177 --------------------FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                               FDE+ + D VS+N++I+ Y++ G  + A +LF  MRE   
Sbjct: 77  FNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFL 136

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D  TL  ++ +CG   ++ L + +    V   +D    +G+ALI  Y K G L  ARR
Sbjct: 137 DMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 277 VFDAMV-NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +F  +  ++D V+WN+M+ AY Q+   ++A+ L+  M   G+  D  TL  VL+A  ++ 
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 336 ALDLGKWVDKYASQRGLRHDIFCGS--ID----------DALKVFEDMPVTNEVSWNAMI 383
            L  G        + G   +   GS  ID          D  KVF+++   + V WN MI
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314

Query: 384 SALA-FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           S  + +   + EAL  F ++   G   RP+D + + V+SAC +     +GR++  L   +
Sbjct: 315 SGYSLYEDLSDEALECFRQLQVVG--HRPDDCSLVCVISACSNMSSPSQGRQVHGL---A 369

Query: 443 FGLIPKSEHYS---CMVDLYARAGHLSEAWDFVERMPE 477
             L   S   S    ++ +Y++ G+L +A    + MPE
Sbjct: 370 LKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPE 407



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 50/281 (17%)

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV--------- 277
           L +C    DL  GK +    +K+ +  + Y+ +  + +Y KC  L  ARRV         
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 278 ----------------------FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
                                 FD M   D V++N +I AYA+ G +  A  LF  M+ A
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREA 134

Query: 316 GVNPDKITLIGVLSACA-------SIGALDLGKWVDKYASQRGLRHDIFC--GSIDDALK 366
            ++ D  TL G+++AC         + AL +   +D Y S        +   G + +A +
Sbjct: 135 FLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 367 VF----EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +F    ED    +EVSWN+M+ A   +    +AL L+  M+  G     +  T   VL+A
Sbjct: 195 IFHWLSED---RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIV--DIFTLASVLTA 249

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             +   +  G +    +  S G    S   S ++DLY++ G
Sbjct: 250 FTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCG 289


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 199/605 (32%), Positives = 299/605 (49%), Gaps = 91/605 (15%)

Query: 30  LLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEY 84
           LLK+C S KT+  IH  +LI+  I   +  L +++ L       +YA  LF +   PN +
Sbjct: 9   LLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSF 68

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +  +I G T   Q Y ++   + +M R  + P NFT   V  + + L  +  G  V+  
Sbjct: 69  LWTALIHGFTENNQ-YENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGL 127

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             + G + D  V + +I ++ RCG++ SAR++FDE+ ERD VSWNSMI+GY   G    A
Sbjct: 128 AVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIA 187

Query: 205 VELFGRMREE-------------------------EFLPDE-----ITLVSVLGSCGDLG 234
            +LF RM E                          E +P++       +VS   S G+L 
Sbjct: 188 RKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLV 247

Query: 235 ------DLV----LGKW---VEGFVVKNKMDL-----------NFYMGSALIDMYGKCGA 270
                 +L+    +G W   + G     +MD            N      +ID Y K G 
Sbjct: 248 AARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGD 307

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  AR VFD M  K++V W+ MI  YA+ G    ++ L+   K  G+ PD+   +G++SA
Sbjct: 308 VDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISA 367

Query: 331 CASIGALDLGKWV--------------------DKYASQRGLRHDIFCGSIDDALKVFED 370
           C+ +G  D  + V                    D YA          CG+I+ A++VFE 
Sbjct: 368 CSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAK---------CGNIERAVQVFEM 418

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   +   ++ +I+A A +G + +A+ LF  M K     +P+ V F+GVL+AC H GLV 
Sbjct: 419 VDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKAN--IKPDGVAFLGVLTACNHGGLVG 476

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EGRRLF  M   +G+ P  +HY+CMVD+  RAG L EA   +  MP   +  V GALL A
Sbjct: 477 EGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSA 536

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   N  +++     L +IE +NSGNYV+   I+A+   WDD +K+RA++RE  V K  
Sbjct: 537 CRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNR 596

Query: 551 GCSWI 555
           G SWI
Sbjct: 597 GSSWI 601


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 303/569 (53%), Gaps = 23/569 (4%)

Query: 8   YSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKD 67
           + RHL+         L +   S+L+K    K +QQIH Q++ + +    FL   +++   
Sbjct: 8   FYRHLSSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNA-- 65

Query: 68  FNYASLL------FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           + Y  LL      FH     N  ++ ++I GL      +  ++ ++ +M     KP+  T
Sbjct: 66  YVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKN-DCFVEAIDVFREMTMGNFKPNAVT 124

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
              V  + ANL  +    SVH    + G + +  V  +L+ MY++ G +  AR++F+ + 
Sbjct: 125 ISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMS 184

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           ER++VSWN+++SGYS  G+++EA++LF  MR +  L D  T++S++ +   +G L +G  
Sbjct: 185 ERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG 244

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + GF+++   + + ++ +AL+D+Y     +  A RVF  M  KDV  W  M+T ++    
Sbjct: 245 IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRH 304

Query: 302 SNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
            + AI  FN+M     +  D I L+G+LS+C+  GAL  G+ V   A +    ++IF   
Sbjct: 305 WDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGS 364

Query: 358 --------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                   CG+++DA + F  M   + V WNAMI+    NG   +A+ LF +M  +G   
Sbjct: 365 AVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQM--KGSGL 422

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
            P++ TF+ VL AC HAG+V EG ++F  M  +   IP  +HY+C++D+  RAG L  A+
Sbjct: 423 DPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAY 482

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
            F+  MP + D  V   LLGAC+   N  +   + Q + E+E +++G YV+ S ++A   
Sbjct: 483 SFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAG 542

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGID 558
            W+     RA +R K + K PG S I I+
Sbjct: 543 NWEGVKMTRASLRSKRLKKDPGFSSIEIN 571


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/382 (39%), Positives = 224/382 (58%), Gaps = 13/382 (3%)

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           NSMI  Y+       +V ++ +M +    PD  T  +VL S   L    LGK +   +++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
              + N Y+ +AL++MYG C ++  AR+VFD + ++++V+WNA+IT Y  N +  + I +
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
           F  M+ AG  P ++T++GVL ACA +GAL+ G+W+D Y     LR ++F           
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAK 290

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG +D+A K+F+ M V N  +WN +IS  A NGR   AL  F RM  E    +P++VTF+
Sbjct: 291 CGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIME--KFKPDEVTFL 348

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVL AC H GLV+EGR  F  M   FGL P+ EHY CMVDL  RAG L EA   ++ M  
Sbjct: 349 GVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSM 408

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           + D I+   LLGAC+   N  + +  ++ LLE+E +N  NYV+ + ++A  + WD   ++
Sbjct: 409 QPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468

Query: 538 RALMREKGVSKTPGCSWIGIDD 559
           R +M  + V K PGCS I ID+
Sbjct: 469 REMMDCRRVRKVPGCSSIEIDN 490



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/478 (31%), Positives = 246/478 (51%), Gaps = 56/478 (11%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK----DFNYASL 73
           N P +   K   L K   +   + Q+ +QM++N+I   +  L+++ID       F  ++L
Sbjct: 37  NPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFAASAL 96

Query: 74  LFHQISRPNEYAF------NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           LF Q      Y F      N MIR  T +  K+ HS+ +Y QM + G+ PD+ T+P V  
Sbjct: 97  LFTQF-----YGFIDSDLCNSMIRCYTDS-NKHLHSVFIYTQMWKNGIFPDSSTFPTVLK 150

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           S A L     G ++H  + ++G + + +VS +L+ MY  C  +  AR+VFDEI +R++VS
Sbjct: 151 SVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVS 210

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN++I+GY+     ++ +++F  M+     P E+T+V VL +C  LG L  G+W++ ++ 
Sbjct: 211 WNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYID 270

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
            N++ LN ++G+ALIDMY KCG +  A ++F AM  K+V TWN +I+ YA NG    A+ 
Sbjct: 271 HNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQ 330

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLRHDIFCGSIDDALK 366
            F+RM      PD++T +GVL AC   G ++ G+ +      + GLR  I          
Sbjct: 331 AFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRI---------- 380

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
                       +  M+  L   G   EA  L + MS +     P+ + +  +L AC   
Sbjct: 381 ----------EHYGCMVDLLGRAGFLDEAQQLIQAMSMQ-----PDPIIWRELLGACRIH 425

Query: 427 GLVDEG----RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           G +  G    ++L +L  ++       E+Y  + +LYAR     + WD V  + E +D
Sbjct: 426 GNIQLGEFAIKKLLELEPNN------GENYVLLANLYAR----DQRWDKVGEVREMMD 473


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/382 (39%), Positives = 228/382 (59%), Gaps = 44/382 (11%)

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           P++ TL +V+ +C  +  L  GK    +++K   + +  + +AL+ MY +CG+L  A  V
Sbjct: 8   PNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHV 67

Query: 278 FDAMVNKDVVTWNAMITA-------------------------------YAQNGLSNEAI 306
           FD M  +   TWNAMIT                                YAQNG  +E++
Sbjct: 68  FDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESL 127

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------ 360
            +FN+M+  G+  D+  +  VLSACA + AL+LG+    Y  Q G   DI  GS      
Sbjct: 128 NVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMY 187

Query: 361 -----IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
                ++DA +VF+ MP  NEVSWN++I+  A +GR ++A+LLFE+M + G   +PN+++
Sbjct: 188 AKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG--IKPNEIS 245

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           F+GVLSAC H GLV+EGR  F+LM+ ++G++P   HY+CM+DL  RAG L EA +F+  M
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + D  V GALLGAC+   NT++++R+ + LL +E   +G YV+ S I+A    WDD+A
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 536 KMRALMREKGVSKTPGCSWIGI 557
           K+R LM+++GV K PG SWI +
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEV 387



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 179/333 (53%), Gaps = 44/333 (13%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+KP+ FT   V  +CA++ +L  G   H+ + K+G + D  V  +L+ MYARCG L+ A
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 174 RKVFD-------------------------------EIRERDLVSWNSMISGYSKMGYAK 202
             VFD                               E+ ERD+VSW ++I+GY++ GY  
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E++ +F +MR+     D   + SVL +C DL  L LG+    +VV++   L+  +GSAL+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY K G++  A +VFD M  ++ V+WN++IT  AQ+G  N+A++LF +M  AG+ P++I
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 323 TLIGVLSACASIGALDLGK-WVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           + +GVLSAC+  G ++ G+ + +      G+  D+             G +D+A      
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 371 MPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           MPV  +VS W A++ A   +G    A  + E +
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKRIAEHL 337



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 9/279 (3%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           +++  L+ +  +C S +    +  +M     +  N ++      +D   A  LF+++S  
Sbjct: 46  VVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSER 105

Query: 82  NEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           +  ++  +I G   A   Y   SL ++ QM++ G+K D F    V  +CA+L AL  G  
Sbjct: 106 DVVSWTAVIAGY--AQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ 163

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H+ V + G   D  V  +L+ MYA+ G ++ A +VFD++ +R+ VSWNS+I+G ++ G 
Sbjct: 164 FHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGR 223

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK---MDLNFYM 257
             +AV LF +M +    P+EI+ V VL +C   G +  G+     + +N     D++ Y 
Sbjct: 224 GNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHY- 282

Query: 258 GSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
            + +ID+ G+ G L  A    + M V  DV  W A++ A
Sbjct: 283 -TCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGA 320


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 290/515 (56%), Gaps = 18/515 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL       D   +  +F +I++ N  ++  MI       +    +L+ + +M + G+
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRG-EFSEKALRSFSEMIKSGI 299

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYARCGKLDSAR 174
           +P+  T   V  SC  +  +  G SVH    +  LD + + +S +L+ +YA CGKL    
Sbjct: 300 EPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCE 359

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            V   + +R++V+WNS+IS Y+  G   +A+ LF +M  +   PD  TL S + +C + G
Sbjct: 360 TVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAG 419

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            + LGK + G V++  +   F   S LIDMY K G++  A  VF+ + ++ VVTWN+M+ 
Sbjct: 420 LVPLGKQIHGHVIRTDVSDEFVQNS-LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLC 478

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            ++QNG S EAI LF+ M ++ +  +++T + V+ AC+SIG+L+ GKWV       GL+ 
Sbjct: 479 GFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK- 537

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D+F           CG ++ A  VF  M   + VSW++MI+A   +GR   A+  F +M 
Sbjct: 538 DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMV 597

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           + G   +PN+V F+ VLSAC H+G V+EG+  F+LM S FG+ P SEH++C +DL +R+G
Sbjct: 598 ESG--TKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKS-FGVSPNSEHFACFIDLLSRSG 654

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA+  ++ MP   D  V G+L+  C+  +  D+ + +   L +I + ++G Y + S 
Sbjct: 655 DLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSN 714

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           I+A    W++  ++R+ M+   + K PG S I ID
Sbjct: 715 IYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEID 749



 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 244/464 (52%), Gaps = 29/464 (6%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKDF----NYASLLFHQISR 80
           + + L + C S + V Q+H  +L+   +++    + ++I+   F    + + L+F     
Sbjct: 3   QYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPY 62

Query: 81  PNEYAFNVMIRGLTTAW-QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA-LNHG 138
           P+ + + V+I+     W      ++ LY+++     +   F +P V  +CA     L+ G
Sbjct: 63  PDSFMYGVLIK--CNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVG 120

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             VH  + K G+D+D  +  SL+ MY + G L  A KVFD +  RDLV+W++++S   + 
Sbjct: 121 GKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLEN 180

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G   +A+ +F  M ++   PD +T++SV+  C +LG L + + V G + +   DL+  + 
Sbjct: 181 GEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLC 240

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L+ MY KCG L+ + R+F+ +  K+ V+W AMI++Y +   S +A+  F+ M  +G+ 
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIE 300

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------------IFCGSIDDALK 366
           P+ +TL  VLS+C  IG +  GK V  +A +R L  +              CG + D   
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCET 360

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           V   +   N V+WN++IS  A  G   +AL LF +M  +    +P+  T    +SAC +A
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQ--RIKPDAFTLASSISACENA 418

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEA 468
           GLV  G+++   +  +      S+ +  + ++D+Y+++G +  A
Sbjct: 419 GLVPLGKQIHGHVIRT----DVSDEFVQNSLIDMYSKSGSVDSA 458


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 267/477 (55%), Gaps = 27/477 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+ +  M  LG+K        +  +C++   +  G  +HS +   G + +  V+++++T
Sbjct: 231 ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMT 290

Query: 163 MYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           MY RCG ++ ARKVFD + E  RD+VSWN M+S Y      K+A++L+ RM   +   D+
Sbjct: 291 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM---QLRADK 347

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           +T VS+L +C    D+ LG+ +   +V ++++ N  +G+AL+ MY KCG+   AR VFD 
Sbjct: 348 VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK 407

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-------KYAGVNPDKITLIGVLSACAS 333
           M  + +++W  +I+AY +  L  EA  LF +M           V PD +  + +L+ACA 
Sbjct: 408 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACAD 467

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS-WNA 381
           + AL+ GK V + A+  GL  D             CG I++  ++F+ +    +V  WNA
Sbjct: 468 VSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNA 527

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI+  A  G++HEAL LF RM  EG   RP+  +F+ +L AC H GL D+G+  F  M++
Sbjct: 528 MIAVYAQFGQSHEALKLFWRMEMEG--VRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT 585

Query: 442 SFGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS 500
            +  + ++ +H+ C+ DL  R G L EA +F+E++P K D +   +LL AC+  ++   +
Sbjct: 586 EYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRA 645

Query: 501 QRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + V   LL +E   +  YV  S I+A L+ W   AK+R  M E+GV K  G S I I
Sbjct: 646 KEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 702



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 241/483 (49%), Gaps = 23/483 (4%)

Query: 91  RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
           R L TA    S        +++  ++ +N TY  +   CA   AL  G  +HS   K  L
Sbjct: 15  RCLHTASLDRSDIASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNL 74

Query: 151 DEDDHV-SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
              + +  + +++MYA C     A+  FD + +R+L SW  +++ ++  G +KE +    
Sbjct: 75  LPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALE 134

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
           RMR++   PD +T ++ LGSCGD   L  G  +   VV ++++++  + +AL++MY KCG
Sbjct: 135 RMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCG 194

Query: 270 ALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           +L  A+RVF  M   ++V++W+ M  A+A +G   EA+  F  M   G+   K  ++ +L
Sbjct: 195 SLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTIL 254

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE--DMPVTN 375
           SAC+S   +  G+ +    +  G   ++            CG++++A KVF+  D  + +
Sbjct: 255 SACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRD 314

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            VSWN M+SA   N R  +A+ L++RM       R + VT++ +LSAC  A  V  GR L
Sbjct: 315 VVSWNIMLSAYVHNDRGKDAIQLYQRMQ-----LRADKVTYVSLLSACSSAEDVGLGRVL 369

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
              + +   L       + +V +YA+ G  +EA    ++M E+   I    ++ A  +++
Sbjct: 370 HKQIVND-ELEKNVIVGNALVSMYAKCGSHTEARAVFDKM-EQRSIISWTTIISAYVRRR 427

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
               +  + Q +LE+E + S   V      A + + +  A + AL + K VS+      +
Sbjct: 428 LVAEACHLFQQMLELEKNGSSQRV-KPDALAFVTILNACADVSALEQGKMVSEQAASCGL 486

Query: 556 GID 558
             D
Sbjct: 487 SSD 489


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 275/492 (55%), Gaps = 18/492 (3%)

Query: 82  NEYAFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           N  ++NVM+ G     +   +  L    QM+  G+  D  T   V   C+ L  L     
Sbjct: 233 NVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRE 292

Query: 141 VHSSVFKIGLD-EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           +H+ V + GL    D V ++LI  Y RCG L  A +VFD I  + + SWN++I  +++ G
Sbjct: 293 LHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNG 352

Query: 200 YAKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
            A  A+ELF  M       PD  ++ S+L +CG+L  L+ GK   GF+++N ++ + ++ 
Sbjct: 353 EASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIR 412

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAG 316
            +L+ +Y +CG    AR +FDA+  KD V+WN MI  Y+QNGL  E++ LF  M  K  G
Sbjct: 413 VSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGG 472

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
             P  +     L AC+ + A+ LGK +  +A +  L  D F           CGS+DDA 
Sbjct: 473 HWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDAR 532

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
             F+ +   + VSW  MI+  A NGR  EA+ L+++M +EG    P+  T++G+L AC H
Sbjct: 533 VFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREG--MEPDGFTYLGLLMACGH 590

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           AG++++G   F  M +   +  K EHY+C++ + +RAG  ++A   +E MPE+ D  +L 
Sbjct: 591 AGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILS 650

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           ++L AC      ++ ++V   LLE+E   + +YV++S ++A  + WD+  K+R ++R+ G
Sbjct: 651 SVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAG 710

Query: 546 VSKTPGCSWIGI 557
           V+K PGCSWI I
Sbjct: 711 VAKEPGCSWIDI 722



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/426 (30%), Positives = 205/426 (48%), Gaps = 34/426 (7%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDS 172
           G+ PD FT P    SC      + G  VH+   K+GL D D  V +SL++MY RCG++D 
Sbjct: 62  GVAPDRFTLPPALKSCRG----DDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDD 117

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE---EFLPDEITLVSVLGS 229
           A KVF+ +  R+LVSWN++++  +     +  +ELF    E+      PDE TLV+VL  
Sbjct: 118 AEKVFEGMAGRNLVSWNALMAAVAD---PRRGLELFRDCLEDLGGTAAPDEATLVTVLPM 174

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF---DAMVNKDV 286
           C  L     G+ V G  VK+  D    + + L+DMY KCG +  A   F        ++V
Sbjct: 175 CAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNV 234

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYA--GVNPDKITLIGVLSACASIGALDLGKWVD 344
           V+WN M+  YA+NG +  A  L   M+    GV  D+IT++ VL  C+ +  L   + + 
Sbjct: 235 VSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELH 294

Query: 345 KYASQRGLR--HDIF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
            +  +RGL    D+           CG +  A +VF+ +      SWNA+I A A NG A
Sbjct: 295 AFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEA 354

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
             A+ LF  M+   G  +P+  +   +L AC +   +  G+     +  + GL   S   
Sbjct: 355 SAAIELFREMTNACG-QKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRN-GLEKDSFIR 412

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
             ++ +Y + G  S A    + + EK DE+    ++          +    +QL  E++S
Sbjct: 413 VSLLSVYIQCGRESLARVLFDAVEEK-DEVSWNTMIAG---YSQNGLPGESLQLFREMQS 468

Query: 513 SNSGNY 518
              G++
Sbjct: 469 KKGGHW 474



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 146/324 (45%), Gaps = 43/324 (13%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQISRP 81
           SLL  C + K +   +  H  +L N ++K +F+ + +    I     + A +LF  +   
Sbjct: 379 SLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEK 438

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +E ++N MI G +        SL+L+ +M  K+ G  P         ++C+ L A+  G 
Sbjct: 439 DEVSWNTMIAGYSQNGLP-GESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGK 497

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H    K  L ED  +S S+I MY++CG +D AR  FD ++ +D VSW  MI+GY+  G
Sbjct: 498 EMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNG 557

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             KEAV L+ +M  E   PD  T + +L +CG  G L      +G     +M  N     
Sbjct: 558 RGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGML-----EDGLCFFQEMR-NLPKIE 611

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           A ++ Y                          +I   ++ G   +A+ L   M      P
Sbjct: 612 AKLEHYA------------------------CVIGMLSRAGRFADAVALMEVMPE---EP 644

Query: 320 DKITLIGVLSACASIGALDLGKWV 343
           D   L  VLSAC   G ++LGK V
Sbjct: 645 DAKILSSVLSACHMHGEVELGKKV 668


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 174/493 (35%), Positives = 254/493 (51%), Gaps = 55/493 (11%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           D+ +     I+C  +  L     +H+ +   G  + + +   L++ Y   G L +A KVF
Sbjct: 33  DDGSLEETHITCDTIKKLK---QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVF 89

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237
           + I       WN MI G+S+     + VEL+ RM E E  P+E T   ++G C     L 
Sbjct: 90  ERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLR 149

Query: 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYG------------------------------- 266
            G+ V G VV N    N ++ ++L+++Y                                
Sbjct: 150 EGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLA 209

Query: 267 ---KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
              +CG +  ARR+FD M  ++VV+W  MI   AQ G   +A+ LF+ M+ AGV  D++ 
Sbjct: 210 GYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVA 269

Query: 324 LIGVLSACASIGALDLGKWVDKYASQR----------GLRHDIF-----CGSIDDALKVF 368
           L+  LSACA +G L LG W+  Y  +R           L + +      CG ID A KVF
Sbjct: 270 LVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVF 329

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG-AARPNDVTFIGVLSACVHAG 427
             M   + +SW +MI+  A  G A EAL +F+ M + G    RP+ +TFIGVL AC HAG
Sbjct: 330 IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAG 389

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            VD+GR  F+ M+  +G++P+ EHY CMVDL +RAG L EA    E MP K ++ V GAL
Sbjct: 390 FVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGAL 449

Query: 488 LGACQKQKNTDVSQRVMQ-LLLEIESSNSGNY-VISSKIFANLKMWDDSAKMRALMREKG 545
           LG C+  KN +++  V Q L+LE++   +  Y V+ S ++A  K W D A +R  M E G
Sbjct: 450 LGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIG 509

Query: 546 VSKTPGCSWIGID 558
           V K  G SW+ I+
Sbjct: 510 VRKPAGRSWVQIN 522



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 222/452 (49%), Gaps = 64/452 (14%)

Query: 34  CPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVM 89
           C + K ++QIHTQ+++N   + NFLL++++       +   A  +F +I  P+   +N M
Sbjct: 44  CDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQM 103

Query: 90  IRGLTTAWQKYSHSL-KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
           IRG + +  +  H L +LY +M     +P+ FTY F+   CA    L  G  VH  V   
Sbjct: 104 IRGHSQS--ETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVAN 161

Query: 149 GLDEDDHVSHSLITMYA----------------------------------RCGKLDSAR 174
           G   +  V  SL+ +YA                                  RCG +D AR
Sbjct: 162 GYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGAR 221

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           ++FDE+ ER++VSW +MI+G +++G  K+A+ LF  MR      D++ LV+ L +C +LG
Sbjct: 222 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 281

Query: 235 DLVLGKWVEGFVVK----NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
           DL LG W+  ++ +        L   + ++LI MY  CG +  A +VF  M  +  ++W 
Sbjct: 282 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 341

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVN---PDKITLIGVLSACASIGALDLG------- 340
           +MIT +A+ G + EA+ +F  M+  G +   PD IT IGVL AC+  G +D G       
Sbjct: 342 SMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECM 401

Query: 341 --KW-VDKYASQRGLRHDIF--CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHE 394
             KW +       G   D+    G +D+A ++ E MP+  N+  W A++     +  A  
Sbjct: 402 NKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAEL 461

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           A  + +++  E    +P+      VL + V+A
Sbjct: 462 ASHVAQKLVLE---LKPDQAAGYLVLLSNVYA 490


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 279/513 (54%), Gaps = 29/513 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           A+ +F  +   +  A+N M+ G       +   +H L +  QM RL  +P+  T   +  
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRL--RPNASTLVALLP 121

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDH----------VSHSLITMYARCGKLDSARKVF 177
             A   AL  G SVH+   +  L  + +          +  +L+ MYA+CG L  AR+VF
Sbjct: 122 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 181

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLVSVLGSCGDLGDL 236
           D +  R+ V+W+++I G+       +A  LF  M  +        ++ S L +C  L  L
Sbjct: 182 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHL 241

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
            +G+ +   + K+ +  +   G++L+ MY K G +  A  +FD M  KD V+++A+++ Y
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-- 354
            QNG + EA ++F +M+   V PD  T++ ++ AC+ + AL  G+        RGL    
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 355 -------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                  D++  CG ID + +VF  MP  + VSWN MI+    +G   EA  LF  M+  
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNL 421

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G    P+ VTFI +LSAC H+GLV EG+  F +M   +GL P+ EHY CMVDL +R G L
Sbjct: 422 GFP--PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFL 479

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA++F++ MP + D  V  ALLGAC+  KN D+ ++V +++ E+    +GN+V+ S I+
Sbjct: 480 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIY 539

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +    +D++A++R + + +G  K+PGCSWI I+
Sbjct: 540 SAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 202/395 (51%), Gaps = 31/395 (7%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R  + P+N+T+PF   +C+ L   + G ++H      GL  D  VS +L+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE--LFGRMREEEFLPDEITLVSVL 227
           L  A  +F  +  RDLV+WN+M++GY+  G    AV   L  +M+     P+  TLV++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 228 GSCGDLGDLVLGKWVEGFVV----------KNKMDLNFYMGSALIDMYGKCGALVPARRV 277
                 G L  G  V  + +          K+K+     +G+AL+DMY KCG+L+ ARRV
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG---VNPDKITLIGVLSACASI 334
           FDAM  ++ VTW+A+I  +       +A +LF  M   G   ++P  I     L ACAS+
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASL 238

Query: 335 GALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMI 383
             L +G+ +    ++ G+  D+  G+           ID A+ +F++M V + VS++A++
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           S    NGRA EA L+F++M  +     P+  T + ++ AC H   +  GR     +    
Sbjct: 299 SGYVQNGRAEEAFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR- 355

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           GL  ++   + ++D+YA+ G +  +      MP +
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 171/333 (51%), Gaps = 21/333 (6%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS- 128
           YA  +F  +   NE  ++ +I G      + + +  L+  M   GL    F  P    S 
Sbjct: 176 YARRVFDAMPARNEVTWSALIGGFVLC-SRMTQAFLLFKAMLAQGL---CFLSPTSIASA 231

Query: 129 ---CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              CA+L  L  G  +H+ + K G+  D    +SL++MYA+ G +D A  +FDE+  +D 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VS+++++SGY + G A+EA  +F +M+     PD  T+VS++ +C  L  L  G+   G 
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 351

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V+   +     + +ALIDMY KCG +  +R+VF+ M ++D+V+WN MI  Y  +GL  EA
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 411

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLR---HDIFC--- 358
             LF  M   G  PD +T I +LSAC+  G +  GK W        GL        C   
Sbjct: 412 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVD 471

Query: 359 -----GSIDDALKVFEDMPVTNEVS-WNAMISA 385
                G +D+A +  + MP+  +V  W A++ A
Sbjct: 472 LLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 504


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 281/514 (54%), Gaps = 31/514 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           A+ +F  +   +  A+N M+ G       +   +H L +  QM RL  +P+  T   +  
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRL--RPNASTLVALLP 236

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDH----------VSHSLITMYARCGKLDSARKVF 177
             A   AL  G SVH+   +  L  + +          +  +L+ MYA+CG L  AR+VF
Sbjct: 237 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 296

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE--FLPDEITLVSVLGSCGDLGD 235
           D +  R+ V+W+++I G+       +A  LF  M  +   FL    ++ S L +C  L  
Sbjct: 297 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL-SPTSIASALRACASLDH 355

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L +G+ +   + K+ +  +   G++L+ MY K G +  A  +FD M  KD V+++A+++ 
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH- 354
           Y QNG + EA ++F +M+   V PD  T++ ++ AC+ + AL  G+        RGL   
Sbjct: 416 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 475

Query: 355 --------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                   D++  CG ID + +VF  MP  + VSWN MI+    +G   EA  LF  M+ 
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G    P+ VTFI +LSAC H+GLV EG+  F +M   +GL P+ EHY CMVDL +R G 
Sbjct: 536 LGFP--PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 593

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L EA++F++ MP + D  V  ALLGAC+  KN D+ ++V +++ E+    +GN+V+ S I
Sbjct: 594 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 653

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++    +D++A++R + + +G  K+PGCSWI I+
Sbjct: 654 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 222/435 (51%), Gaps = 32/435 (7%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAW-QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  LF QI  P+   +N +IR  +++     +  L LY +M R  + P+N+T+PF   +C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L   + G ++H      GL  D  VS +L+ MY +C  L  A  +F  +  RDLV+WN
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 190 SMISGYSKMGYAKEAVE--LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +M++GY+  G    AV   L  +M+     P+  TLV++L      G L  G  V  + +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 248 ----------KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
                     K+K+     +G+AL+DMY KCG+L+ ARRVFDAM  ++ VTW+A+I  + 
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 298 QNGLSNEAIMLFNRMKYAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
                 +A +LF  M   G   ++P  I     L ACAS+  L +G+ +    ++ G+  
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 355 DIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D+  G+           ID A+ +F++M V + VS++A++S    NGRA EA L+F++M 
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM- 432

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +     P+  T + ++ AC H   +  GR     +    GL  ++   + ++D+YA+ G
Sbjct: 433 -QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCG 490

Query: 464 HLSEAWDFVERMPEK 478
            +  +      MP +
Sbjct: 491 RIDLSRQVFNMMPSR 505



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 171/333 (51%), Gaps = 21/333 (6%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS- 128
           YA  +F  +   NE  ++ +I G      + + +  L+  M   GL    F  P    S 
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLC-SRMTQAFLLFKAMLAQGL---CFLSPTSIASA 346

Query: 129 ---CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              CA+L  L  G  +H+ + K G+  D    +SL++MYA+ G +D A  +FDE+  +D 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VS+++++SGY + G A+EA  +F +M+     PD  T+VS++ +C  L  L  G+   G 
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 466

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V+   +     + +ALIDMY KCG +  +R+VF+ M ++D+V+WN MI  Y  +GL  EA
Sbjct: 467 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 526

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLR---HDIFC--- 358
             LF  M   G  PD +T I +LSAC+  G +  GK W        GL        C   
Sbjct: 527 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVD 586

Query: 359 -----GSIDDALKVFEDMPVTNEVS-WNAMISA 385
                G +D+A +  + MP+  +V  W A++ A
Sbjct: 587 LLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 619



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 28/346 (8%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMG--YAKEAVELFGRMREEEFLPDEITLVS 225
           G L  A  +FD+I   D+ ++N +I  YS      A + + L+ RM      P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
            L +C  L D   G+ +    +   +  + ++ +AL+DMY KC  L  A  +F  M  +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 286 VVTWNAMITAYAQNGLSNEAI--MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +V WNAM+  YA +G+ + A+  +L  +M+   + P+  TL+ +L   A  GAL  G  V
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 344 DKYASQRGLRH-------------------DIF--CGSIDDALKVFEDMPVTNEVSWNAM 382
             Y  +  L                     D++  CGS+  A +VF+ MP  NEV+W+A+
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I       R  +A LLF+ M  + G    +  +    L AC     +  G +L  L++ S
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQ-GLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G+       + ++ +YA+AG + +A    + M  K D +   AL+
Sbjct: 370 -GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALV 413



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 33/306 (10%)

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA--IMLFNRMKYAGVNPDKITLIG 326
           G L  A  +FD + + DV T+N +I AY+ +  +  A  + L+ RM    V P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
            L AC+++     G+ + ++A   GL+ D+F           C  + DA  +F  MP  +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            V+WNAM++  A +G  H A+     M  +    RPN  T + +L      G + +G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 436 FDLMSSSFGLIPKSEHYS----------CMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
                 +  L P     S           ++D+YA+ G L  A    + MP + +E+   
Sbjct: 251 HAYCIRAC-LHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWS 308

Query: 486 ALLGA---CQKQKNTDVSQRVM--QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
           AL+G    C +     +  + M  Q L  +  ++  + + +     +L+M +   ++ AL
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGE---QLHAL 365

Query: 541 MREKGV 546
           + + GV
Sbjct: 366 LAKSGV 371


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/471 (36%), Positives = 246/471 (52%), Gaps = 52/471 (11%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H+ +   G  + + +   L++ Y   G L +A KVF+ I       WN MI G+S+  
Sbjct: 36  QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSE 95

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              + VEL+ RM E E  P+E T   ++G C     L  G+ V G VV N    N ++ +
Sbjct: 96  TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRT 155

Query: 260 ALIDMYG----------------------------------KCGALVPARRVFDAMVNKD 285
           +L+++Y                                   +CG +  ARR+FD M  ++
Sbjct: 156 SLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERN 215

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           VV+W  MI   AQ G   +A+ LF+ M+ AGV  D++ L+  LSACA +G L LG W+  
Sbjct: 216 VVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS 275

Query: 346 YASQR----------GLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
           Y  +R           L + +      CG ID A KVF  M   + +SW +MI+  A  G
Sbjct: 276 YIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 335

Query: 391 RAHEALLLFERMSKEGG-AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
            A EAL +F+ M + G    RP+ +TFIGVL AC HAG VD+GR  F+ M+  +G++P+ 
Sbjct: 336 HAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRI 395

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ-LLL 508
           EHY CMVDL +RAG L EA   +E MP K ++ V GALLG C+  KN +++  V Q L L
Sbjct: 396 EHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLAL 455

Query: 509 EIESSNSGNY-VISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           E++   +  Y V+ S ++A  K W D A +R  M E GV K  G SW+ I+
Sbjct: 456 ELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 506



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 230/463 (49%), Gaps = 64/463 (13%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           L++   SLL+ C + K ++QIHTQ+++N   + NFLL++++       +   A  +F +I
Sbjct: 17  LQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERI 76

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSL-KLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
             P+   +N MIRG + +  +  H L +LY +M     +P+ FTY F+   CA    L  
Sbjct: 77  ENPSTTVWNQMIRGHSQS--ETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLRE 134

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYA-------------------------------- 165
           G  VH  V   G   +  V  SL+ +YA                                
Sbjct: 135 GEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAG 194

Query: 166 --RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
             RCG +D AR++FDE+ ER++VSW +MI+G +++G  K+A+ LF  MR      D++ L
Sbjct: 195 YVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVAL 254

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVK----NKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           V+ L +C +LGDL LG W+  ++ +        L   + ++LI MY  CG +  A +VF 
Sbjct: 255 VAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFI 314

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN---PDKITLIGVLSACASIGA 336
            M  +  ++W +MIT +A+ G + EA+ +F  M+  G +   PD IT IGVL AC+  G 
Sbjct: 315 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 374

Query: 337 LDLG---------KW-VDKYASQRGLRHDIF--CGSIDDALKVFEDMPVT-NEVSWNAMI 383
           +D G         KW +       G   D+    G +D+A ++ E MP+  N+  W A++
Sbjct: 375 VDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALL 434

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
                +  A  A  + ++++ E    +P+      VL + V+A
Sbjct: 435 GGCRIHKNAELASHVAQKLALE---LKPDQAAGYLVLLSNVYA 474



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 133/353 (37%), Gaps = 92/353 (26%)

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
           S+L +C  +  L   K +   ++ N      ++   L+  Y   G L+ A +VF+ + N 
Sbjct: 23  SLLQTCDTIKKL---KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENP 79

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
               WN MI  ++Q+   ++ + L+NRM  A   P++ T   ++  CA    L  G+ V 
Sbjct: 80  STTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVH 139

Query: 345 KYASQRGLRHDIF---------------------------------------------CG 359
                 G   ++F                                             CG
Sbjct: 140 GRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCG 199

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D A ++F++MP  N VSW  MI+  A  GR  +AL LF  M + G   + + V  +  
Sbjct: 200 DVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG--VKLDQVALVAA 257

Query: 420 LSAC-------------------VHAG----LVDEGRRLFDLMSSSFGLIPKSEH----- 451
           LSAC                   +HAG    LV     L   M +S G+I K+       
Sbjct: 258 LSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIH-MYASCGVIDKAYKVFIGM 316

Query: 452 -------YSCMVDLYARAGHLSEAWDFVERMPE------KVDEIVLGALLGAC 491
                  ++ M+  +A+ GH  EA    + M        + D I    +L AC
Sbjct: 317 QQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCAC 369


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 257/428 (60%), Gaps = 14/428 (3%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           ++H  V K        +   L++ Y   G    A ++FDE+ ++DLVSWNS+ISG+S+  
Sbjct: 59  ALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRA 118

Query: 200 YAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
                + L  RMR E  L P+E+T++ V+ +C  +G+L +GK + G  VK+ M L   + 
Sbjct: 119 DLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVV 178

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++LI++YGKCG L  A  +F+ M  + +V+WN+M+  +   GL+ + I  F  M+ AG+N
Sbjct: 179 NSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGIN 238

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKV 367
            D+ T++ +L AC ++G   L + V  Y    GL  ++             G++ D+ KV
Sbjct: 239 SDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKV 298

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F  M   + V+W AM+S+ A +GR  EA+  FE M +EG    P+ VTF  +LSAC H+G
Sbjct: 299 FGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREG--VVPDHVTFTHLLSACSHSG 356

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           LV+EG+  F +M   +G+  + EHYSCMVDL  R+GHL++A+  ++ MP + +  V GAL
Sbjct: 357 LVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGAL 416

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           +GAC+ + N ++ + V + L  ++ S+S NY+  S +++    W D++K+RALM+E+ + 
Sbjct: 417 IGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLI 476

Query: 548 KTPGCSWI 555
           + PGCS+I
Sbjct: 477 RNPGCSYI 484



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 212/428 (49%), Gaps = 19/428 (4%)

Query: 13  AFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF----LLIRIIDLKDF 68
            F   ++   L   L++ +  C S    + +H +++ +      F    L+   ++L   
Sbjct: 30  TFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCT 89

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFI 127
             A  LF ++   +  ++N +I G +         L L ++M+  +GLKP+  T   V  
Sbjct: 90  KDALELFDELPDKDLVSWNSLISGFSRR-ADLGICLGLLFRMRFEMGLKPNEVTVIPVVS 148

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +CA +  L+ G  +H    K G+  +  V +SLI +Y +CG L++A  +F+ +  + LVS
Sbjct: 149 ACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVS 208

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNSM++ +  MG A++ +  F  MR      D+ T+VS+L +C +LG   L + V G+++
Sbjct: 209 WNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYIL 268

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              +D N  + +AL+D+Y K G L  + +VF  M+N D V W AM+++YA +G   EAI 
Sbjct: 269 NGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIE 328

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK-----YASQRGLRH-----DIF 357
            F  M   GV PD +T   +LSAC+  G ++ GK   K     Y  +  + H     D+ 
Sbjct: 329 HFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLL 388

Query: 358 --CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              G ++DA K+ + MP+  N   W A+I A    G       + ER+     +   N +
Sbjct: 389 GRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYI 448

Query: 415 TFIGVLSA 422
           T   + SA
Sbjct: 449 TLSNMYSA 456


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 259/468 (55%), Gaps = 48/468 (10%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            ++H + +H+ +F+ GLD    ++  L   YA  G+LD +  +F   +   +  W ++I 
Sbjct: 42  TISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIH 101

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G++  G  ++A+  + +M  +   P+  T  S+L  C     +  GK +    VK   D 
Sbjct: 102 GHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDS 157

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNK----------------------------- 284
           + Y+ + L+D+Y + G +V A+++FD M  K                             
Sbjct: 158 DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 217

Query: 285 --DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
             D V WN MI  Y QNG+ NEA++LF RM  A   P+++T++ VLSAC  +GAL+ G+W
Sbjct: 218 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 277

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           V  Y    G++ ++            CGS++DA  VF+ +   + V+WN+MI   A +G 
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           + EAL LF+ M + G    P ++TFIG+LSAC H+G V EG  +F+ M   +G+ PK EH
Sbjct: 338 SQEALQLFKSMCRMG--LHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 395

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y CMV+L  RAGH+ +A++ V+ M  + D ++ G LLGAC+      + +++++LL++  
Sbjct: 396 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 455

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            +NSG Y++ S I+A +  WD  A++R +M++ GV K PGCS I +++
Sbjct: 456 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 503



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/490 (31%), Positives = 235/490 (47%), Gaps = 80/490 (16%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFI-QKP--NFLLIR-IIDLKDFNYASLLFHQISRP 81
           +L  L+ K  +   + QIH  +  + +   P  NF L R    L   +Y+  LF +   P
Sbjct: 32  RLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP 91

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           + + +  +I G       +  +L  Y QM   G++P+ FT    F S   L  +  G ++
Sbjct: 92  SVFFWTAIIHGHALR-GLHEQALNFYAQMLTQGVEPNAFT----FSSILKLCPIEPGKAL 146

Query: 142 HSSVFKIGLDEDDHVSHSLITMYAR---------------------------C----GKL 170
           HS   K+G D D +V   L+ +YAR                           C    G+L
Sbjct: 147 HSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGEL 206

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           D+AR +FD + ERD V WN MI GY++ G   EA+ LF RM + +  P+E+T++SVL +C
Sbjct: 207 DAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 266

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
           G LG L  G+WV  ++  N +  N ++G+AL+DMY KCG+L  AR VFD + +KDVV WN
Sbjct: 267 GQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWN 326

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDK 345
           +MI  YA +G S EA+ LF  M   G++P  IT IG+LSAC   G +  G     K  D+
Sbjct: 327 SMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDE 386

Query: 346 YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           Y  +  + H                        +  M++ L   G   +A  L + M+ E
Sbjct: 387 YGIEPKIEH------------------------YGCMVNLLGRAGHVEQAYELVKNMNIE 422

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
                P+ V +  +L AC   G +  G ++ +L+      +  S  Y  + ++YA  G+ 
Sbjct: 423 -----PDPVLWGTLLGACRLHGKIALGEKIVELLVDQN--LANSGTYILLSNIYAAVGN- 474

Query: 466 SEAWDFVERM 475
              WD V R+
Sbjct: 475 ---WDGVARL 481


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 258/474 (54%), Gaps = 52/474 (10%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG-KLDS-ARKVFDEIRERDLV 186
           C NL  +     VH+ +   GLD+  +V   LI    +    +D     +F+++   +  
Sbjct: 56  CKNLTQIKQ---VHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPF 112

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG-F 245
            +N++I GY      KE+ E +  MR+E  +P   T  ++  +CG   D+ LG+ + G  
Sbjct: 113 LYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQT 172

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY--------- 296
           ++      + ++G+++IDMY KCG L   R+VFD M N+DV++W  +I+AY         
Sbjct: 173 ILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESA 232

Query: 297 ----------------------AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
                                 AQN    EAIM F +M+  GV  D+ITLIGV+SACA +
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQL 292

Query: 335 GALDLGKWVDKYA--SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
           GA     W+   A  S+ G +H +            CGS+ DA +VF+ M   N  S+++
Sbjct: 293 GAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSS 352

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI   A +GR H+A+ LF+ M K     +PN VTFIGVL+AC HAG+V++G ++F+LM  
Sbjct: 353 MILGFAMHGRVHDAMKLFDEMVKT--EIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
            +G+ P ++HY+CMVDL  RAG L EA + V+ MP +    V GALLGAC+  K+ D++ 
Sbjct: 411 CYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAA 470

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
                L E+E    GNY++ + I+A+   W+D + +R LMR +G+ K P  SWI
Sbjct: 471 IAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWI 524



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 231/485 (47%), Gaps = 75/485 (15%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII-DLKDFN-----YASLLFH 76
           L  ++++ L  C +   ++Q+H ++L+N + +  ++L ++I  L   N     Y   +F+
Sbjct: 45  LESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFN 104

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q++ PN + +N +IRG     ++   S + Y  M++ G+ P +FT+  +F +C   + + 
Sbjct: 105 QVNYPNPFLYNALIRGYLIE-ERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVG 163

Query: 137 HGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
            G  +H     + G  ED HV +S+I MY +CG L+  RKVFDE+  RD++SW  +IS Y
Sbjct: 164 LGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAY 223

Query: 196 SKMG-------------------------------YAKEAVELFGRMREEEFLPDEITLV 224
            K G                                 +EA+  F +M+E     DEITL+
Sbjct: 224 VKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLI 283

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
            V+ +C  LG      W+     K++     +  +GSALIDMY KCG++  A RVF  M 
Sbjct: 284 GVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMK 343

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            ++V ++++MI  +A +G  ++A+ LF+ M    + P+++T IGVL+AC+  G ++ G W
Sbjct: 344 ERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG-W 402

Query: 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                        IF    +   K +   P  +   +  M+  L   GR  EA  L + M
Sbjct: 403 ------------QIF----ELMEKCYGIKPSADH--YTCMVDLLGRAGRLQEAHELVKTM 444

Query: 403 SKEGGAARPNDVTFIGVLSAC-VHAG---LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
             E     P+   +  +L AC +H            LF+L     G      +Y  + ++
Sbjct: 445 PIE-----PHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIG------NYILLANI 493

Query: 459 YARAG 463
           YA  G
Sbjct: 494 YASCG 498


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 308/567 (54%), Gaps = 26/567 (4%)

Query: 14  FTELNDPSLLREK--LLSLLKKCPSTKTVQQ---IHTQML-----INFIQKPNFLLIRII 63
           F E+   SL       ++ L+ C  +  ++Q   IH  +L     IN +   N L+    
Sbjct: 306 FGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYIN-VFVANALIAMYA 364

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
                  A+ +F+ +   +  ++N M+ G       Y  +L+ Y++M+  G KPD     
Sbjct: 365 RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGL-YHEALQFYHEMRDAGQKPDLVAVI 423

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            +  + A      +G+ +H+   K GLD D  V +SL+ MYA+   +     +FD++ ++
Sbjct: 424 SIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK 483

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D+VSW ++I+G+++ G    A+ELF  ++ E    D + + S+L +C  L  +   K + 
Sbjct: 484 DVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIH 543

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
            ++++  +  +  + + ++D+YG+CG +  A R+F+ +  KDVV+W +MI+ Y  NGL+N
Sbjct: 544 SYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN 602

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---------RH 354
           EA+ LF+ MK  GV PD I+L+ +LSA AS+ AL  GK +  +  ++G            
Sbjct: 603 EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLV 662

Query: 355 DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
           D++  CG+++ +  VF  +   + V W +MI+A   +G    A+ LF RM  E  A  P+
Sbjct: 663 DMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIA--PD 720

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            + F+ VL AC H+GL++EGRR  + M   + L P  EHY C+VDL  RA HL EA+ FV
Sbjct: 721 HIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFV 780

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           + M  +    V  ALLGACQ   N ++ +   Q LLE++  N GNYV+ S ++A  + W 
Sbjct: 781 KGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWK 840

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           D  ++R  M+  G+ K PGCSWI + +
Sbjct: 841 DVEEVRMRMKASGLKKNPGCSWIEVGN 867



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 226/413 (54%), Gaps = 15/413 (3%)

Query: 67  DFNYASLLFHQI-SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           D N A  LF ++  + +  ++N MI   ++  Q    +L+L+ +M++  L P+ +T+   
Sbjct: 266 DLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE-ALRLFGEMQKASLAPNTYTFVAA 324

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C +   +  G+ +H++V K     +  V+++LI MYAR GK+  A  +F  + + D 
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 384

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +SWNSM+SG+ + G   EA++ +  MR+    PD + ++S++ +    G+ + G  +  +
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAY 444

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +KN +D +  +G++L+DMY K  ++     +FD M +KDVV+W  +I  +AQNG  + A
Sbjct: 445 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 504

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--------DIF 357
           + LF  ++  G++ D + +  +L AC+ +  +   K +  Y  ++GL          D++
Sbjct: 505 LELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVY 564

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG++D A ++FE +   + VSW +MIS    NG A+EAL LF  M + G    P+ ++
Sbjct: 565 GECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG--VEPDSIS 622

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            + +LSA      + +G+ +   +    G + +    S +VD+YAR G L ++
Sbjct: 623 LVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKS 674



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 249/512 (48%), Gaps = 69/512 (13%)

Query: 13  AFTELND------PSL--LREKLLSLLKKCPSTKTV---QQIHTQMLI-NFIQKPNFLLI 60
           AF  L D      PS   L E   S+L+ C S K +   QQ+H  M+  N +    FL  
Sbjct: 95  AFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLST 154

Query: 61  RIIDLKDFNY--------ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           R++    F Y        A  LF  +     + +N MI    T  +    SL+LY +M+ 
Sbjct: 155 RLV----FMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLG-SLELYREMRV 209

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
            G+  D  T+P +  +C  L     G  VH    K G      V++S++ MY +C  L+ 
Sbjct: 210 SGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNG 269

Query: 173 ARKVFDEIRER-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
           AR++FD + E+ D+VSWNSMIS YS  G + EA+ LFG M++    P+  T V+ L +C 
Sbjct: 270 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 329

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
           D   +  G ++   V+K+   +N ++ +ALI MY + G +  A  +F  M + D ++WN+
Sbjct: 330 DSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNS 389

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           M++ + QNGL +EA+  ++ M+ AG  PD + +I +++A A  G    G  +  YA + G
Sbjct: 390 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNG 449

Query: 352 LRHDIFCGS--IDDALK---------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L  D+  G+  +D   K         +F+ MP  + VSW  +I+  A NG    AL LF 
Sbjct: 450 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 509

Query: 401 RMSKEGGAARPNDVTFI-GVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIPK 448
            +  EG      DV  I  +L AC           +H+ ++ +G  L DL+         
Sbjct: 510 EVQLEGIDL---DVMMISSILLACSGLKLISSVKEIHSYIIRKG--LSDLVLQ------- 557

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
               + +VD+Y   G++    D+  RM E ++
Sbjct: 558 ----NGIVDVYGECGNV----DYAARMFELIE 581



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 213/452 (47%), Gaps = 28/452 (6%)

Query: 117 PDNFT----YPFVFISCANLLALNHGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLD 171
           P  F+    Y  V   C +  AL+ G  VH+ +     L     +S  L+ MY +CG L 
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
            A K+FD +  + + +WN+MI  Y   G    ++EL+  MR      D  T   +L +CG
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWN 290
            L D   G  V G  +K       ++ ++++ MY KC  L  AR++FD M  K DVV+WN
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 287

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           +MI+AY+ NG S EA+ LF  M+ A + P+  T +  L AC     +  G ++     + 
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 351 GLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
               ++F            G + +A  +F +M   + +SWN+M+S    NG  HEAL  +
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
             M   G   +P+ V  I +++A   +G    G ++      + GL    +  + +VD+Y
Sbjct: 408 HEMRDAG--QKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN-GLDSDLQVGNSLVDMY 464

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI--ESSNSGN 517
           A+   +       ++MP+K  ++V    + A   Q  +    R ++L  E+  E  +   
Sbjct: 465 AKFCSMKYMDCIFDKMPDK--DVVSWTTIIAGHAQNGSH--SRALELFREVQLEGIDLDV 520

Query: 518 YVISSKIFA--NLKMWDDSAKMRALMREKGVS 547
            +ISS + A   LK+     ++ + +  KG+S
Sbjct: 521 MMISSILLACSGLKLISSVKEIHSYIIRKGLS 552


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/549 (31%), Positives = 287/549 (52%), Gaps = 45/549 (8%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +Q   Q+H+ +    +     +   ++DL     D   A ++F+  +R 
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRT 308

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +N+++          + S +L+ QM+  G++P+ FTYP +  +C     ++ G  +
Sbjct: 309 NVVLWNLILVAFGQI-NDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQI 367

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS   K G + D +VS  LI MY++ G L+ AR+V + ++E+D+VSW SMI+GY +  Y 
Sbjct: 368 HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYC 427

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           K+A+  F  M++    PD I L S +  C  +  +  G  +   V  +    +  + +AL
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNAL 487

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +++Y +CG +  A   F+ + +KD +TWN +++ +AQ+GL  EA+ +F RM  +GV  + 
Sbjct: 488 VNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T +  LSA A++  +  GK +     + G   +             CGS +DA   F +
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   NEVSWN +I++ + +GR  EAL  F++M KEG             LS         
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDFFDQMKKEG-------------LS--------- 645

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
                F  MS  +G+ P+ +HY+C++D++ RAG L  A  FVE MP   D +V   LL A
Sbjct: 646 ----YFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSA 701

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+  KN +V +   + LLE+E  +S +YV+ S  +A    W +  ++R +MR++GV K P
Sbjct: 702 CKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEP 761

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 762 GRSWIEVKN 770



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 229/466 (49%), Gaps = 20/466 (4%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGL 93
           + V +IH + +   + K   +   +IDL   N     A  +F ++S  +  ++  M+ G 
Sbjct: 59  QVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 94  TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
                    +L LY QM R G+ P  +    V  SC        G SVH+  +K G   +
Sbjct: 119 AQNGLG-EEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSE 177

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V ++LIT+Y RCG    A +VF ++  RD V++N++ISG+++  + + A+E+F  M+ 
Sbjct: 178 TFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQS 237

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
               PD +T+ S+L +C  LGDL  G  +  ++ K  M  ++ M  +L+D+Y KCG +  
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVET 297

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A  +F+     +VV WN ++ A+ Q     ++  LF +M+ AG+ P++ T   +L  C  
Sbjct: 298 ALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTC 357

Query: 334 IGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAM 382
            G +DLG+ +   + + G   D++            G ++ A +V E +   + VSW +M
Sbjct: 358 TGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I+    +    +AL  F+ M K G    P+++     +S C     + +G ++   +  S
Sbjct: 418 IAGYVQHEYCKDALAAFKEMQKCG--IWPDNIGLASAISGCAGIKAMRQGLQIHARVYVS 475

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G       ++ +V+LYAR G + EA+   E +  K DEI    L+
Sbjct: 476 -GYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLV 519


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 277/507 (54%), Gaps = 16/507 (3%)

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           K F  A  +F  ++  +   FN MI     A      +++++  M   GL+P+++T+  +
Sbjct: 90  KLFGDAEKVFDSMACKDVRCFNFMILEYARAGNG-EKAIRVFINMLNAGLQPNDYTFTNI 148

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C   L +  G       FK G   +  + +++I MY + G    A ++F  + +R+L
Sbjct: 149 ISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREAERMFSAMTDRNL 208

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +SW ++ISGY++ G  K+AV+ F  +       D   L ++L  C +  +L LG  + G 
Sbjct: 209 ISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGL 268

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE- 304
           V+K        +G+AL+D+Y KCG L+ AR VFD + +K + ++NA++  + +N    E 
Sbjct: 269 VIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEE 328

Query: 305 -AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
             I+LFN  +  G+ PD +T   +LS  A+   L  G+    YA + G   D+       
Sbjct: 329 DPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFEADLSVANAVI 388

Query: 358 -----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CGSI++A ++F  M   + +SWNAMISA A +G+  + LLLFE M K+  A  P+
Sbjct: 389 TMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFA--PD 446

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
           ++T + +L AC ++GL  +G  LF++M   +G+ P  EHY+CMVDL  RAGHLSEA D +
Sbjct: 447 EITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDLLGRAGHLSEAMDII 506

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
            + P     ++   L+  C+   + +  +   + LLE+    +G+Y++ S ++A  +M D
Sbjct: 507 NKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAGSYILVSNMYAGERMLD 566

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           ++AK+R +M +  +SK  G SWI IDD
Sbjct: 567 EAAKVRTVMNDLKLSKEAGTSWIEIDD 593



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 201/446 (45%), Gaps = 60/446 (13%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157
            ++  +L +  +M + G   +  T   +  +C++      G   H  V K G DE+  V 
Sbjct: 20  NEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFHCFVIKCGFDENVVVG 79

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
            SLI MY R      A KVFD +  +D+  +N MI  Y++ G  ++A+ +F  M      
Sbjct: 80  TSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFINMLNAGLQ 139

Query: 218 PDEITLVSVLGSC-GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           P++ T  +++ +C GDLG +  G+   G   K        +G+A+I+MYGK G    A R
Sbjct: 140 PNDYTFTNIISACDGDLG-IEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREAER 198

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F AM ++++++W A+I+ Y ++G   +A+  F  +   GVN D   L  +L  C+    
Sbjct: 199 MFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRN 258

Query: 337 LDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L+LG  +     + G            D++  CG++  A  VF+ +      S+NA+++ 
Sbjct: 259 LELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAG 318

Query: 386 LAFNGRAHE--ALLLFERMSKEGGAARPNDVTFIGVLS-----------ACVHA------ 426
              N R  E   ++LF     +G   +P+ VTF  +LS            C HA      
Sbjct: 319 FMENSRDGEEDPIVLFNHFRLDG--IKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTG 376

Query: 427 ------------------GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
                             G ++E  R+F++M+        S  ++ M+  YA  G  ++ 
Sbjct: 377 FEADLSVANAVITMYAKCGSIEEAHRMFNVMNDH-----DSISWNAMISAYALHGQGAKV 431

Query: 469 WDFVERMPEK---VDEIVLGALLGAC 491
               E M +K    DEI + ++L AC
Sbjct: 432 LLLFEEMIKKEFAPDEITILSILQAC 457



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 14/297 (4%)

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           R+ ++W S+I GY      + A+ +   M +     +E T   +L +C      + G+  
Sbjct: 4   RNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQF 63

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
             FV+K   D N  +G++LI MY +      A +VFD+M  KDV  +N MI  YA+ G  
Sbjct: 64  HCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNG 123

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-- 360
            +AI +F  M  AG+ P+  T   ++SAC     ++ G+     + + G  ++   G+  
Sbjct: 124 EKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAI 183

Query: 361 ---------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                      +A ++F  M   N +SW A+IS    +G   +A+  F  +   G     
Sbjct: 184 INMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDS 243

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           + +T I  L  C     ++ G ++  L+    G        + +VDLYA+ G+L  A
Sbjct: 244 SLLTTI--LDGCSECRNLELGLQIHGLV-IKLGYACAVNIGTALVDLYAKCGNLMSA 297


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 258/458 (56%), Gaps = 19/458 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P   T+  +  SCA   +L++G+ VH  +   G D+D  ++  LI MY   G +D A KV
Sbjct: 76  PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKV 135

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG----D 232
           FDE RER +  WN++    + +G+ KE ++L+ +M       D  T   VL +C      
Sbjct: 136 FDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           +  L  GK +   ++++  + N ++ + L+D+Y K G++  A  VF AM  K+ V+W+AM
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           I  +A+N +  +A+ LF  M +   N  P+ +T++ +L ACA + AL+ GK +  Y  +R
Sbjct: 256 IACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRR 315

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
            L   +            CG +    +VF++M   + VSWN++IS    +G   +A+ +F
Sbjct: 316 QLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIF 375

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           E M  +G    P+ ++FI VL AC HAGLV+EG+ LF+ M S + + P  EHY+CMVDL 
Sbjct: 376 ENMIHQG--VSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLL 433

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA   +E M  +    V G+LLG+C+   N ++++R   +L E+E  N+GNYV
Sbjct: 434 GRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYV 493

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + + I+A  K+W ++  +  L+  +G+ K PGCSWI +
Sbjct: 494 LLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEV 531



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 226/470 (48%), Gaps = 54/470 (11%)

Query: 19  DPSLLREKLLSLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRII----DLKDFNYA 71
           +P+  ++    L+  C    ++     +H  ++ +   +  FL  ++I    +L   + A
Sbjct: 73  EPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRA 132

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA- 130
             +F +      Y +N + R L          L LY QM  +G   D FTY +V  +C  
Sbjct: 133 LKVFDETRERTIYVWNALFRALAMVGHG-KELLDLYIQMNWIGTPSDRFTYTYVLKACVV 191

Query: 131 ---NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
              ++  L  G  +H+ + + G + + HV  +L+ +YA+ G +  A  VF  +  ++ VS
Sbjct: 192 SELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVS 251

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           W++MI+ ++K     +A+ELF  M  E    +P+ +T+V++L +C  L  L  GK + G+
Sbjct: 252 WSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGY 311

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           +++ ++D    + +ALI MYG+CG ++  +RVFD M  +DVV+WN++I+ Y  +G   +A
Sbjct: 312 ILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKA 371

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRHDIFCGS 360
           I +F  M + GV+P  I+ I VL AC+  G ++ GK      + KY    G+ H      
Sbjct: 372 IQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEH------ 425

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
                             +  M+  L    R  EA+ L E M  E     P    +  +L
Sbjct: 426 ------------------YACMVDLLGRANRLGEAIKLIEDMHFE-----PGPTVWGSLL 462

Query: 421 SAC-VHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEA 468
            +C +H   V+   R   ++   F L P++  +Y  + D+YA A   SEA
Sbjct: 463 GSCRIHCN-VELAERASTVL---FELEPRNAGNYVLLADIYAEAKLWSEA 508


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/562 (32%), Positives = 298/562 (53%), Gaps = 33/562 (5%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINF------IQKPNFLLIRIIDLKDFN-YAS 72
           P++    LLS L+ C S     Q H  +L +       ++  N LL+ +  +      A 
Sbjct: 6   PAVALPTLLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAALAD 65

Query: 73  LLFHQISRP---NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           ++F ++  P   + +A+N  IR    A  +   +L  + +M+R G++PD +T+P V  +C
Sbjct: 66  VVFARLPLPAARDPFAWNTAIR--LHAPARPRAALLYFARMRRCGVRPDAYTFPAVLKAC 123

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLVS 187
                   G+ VH+   + GL  D    ++LI+ Y R   + S RKVFDE     RDLVS
Sbjct: 124 GCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVS 183

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WNSM++GY   G    A E+F  M ++    D  +  +++   G  G   + +  E F  
Sbjct: 184 WNSMVAGYVGCGEMGLAQEMFDEMPQK----DTFSWATLIDGYGKQGGAGVDRARELFDQ 239

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
             + DL  +  +++ID Y + G +  AR +F+ M  ++V++W+ +I  +   G + EA+ 
Sbjct: 240 MPERDLVCW--NSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALE 297

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
            F  M   G+ PD+I  +G +SACA +GAL+ G+W+  Y  ++ L  D+           
Sbjct: 298 YFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYV 357

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +D A+ +FE M   + V+WN MI  L  +G   +A+ LF RM  E  A   +D++ 
Sbjct: 358 KCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAV--DDLSV 415

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +G+L+AC HAGLV EG  +F  M   FG+ PK EHY  +VDL  RAG L +A   +E MP
Sbjct: 416 LGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMP 475

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            +    + G+LL AC+     ++++  ++ L ++ + +SG YV+ S I+A+  MW D  +
Sbjct: 476 MEPTPELWGSLLAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLR 535

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R LM ++G+ K  G S I +D
Sbjct: 536 IRKLMSDEGMRKDIGRSVIEVD 557


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 174/522 (33%), Positives = 284/522 (54%), Gaps = 23/522 (4%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK- 111
           F+   +IDL      F  A  +F ++   +  A+N M+ G       Y H++     M+ 
Sbjct: 136 FVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGM-YHHAIAHLLDMQD 194

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH---VSHSLITMYARCG 168
             GL+P+  T   +    A   AL  G S+H+   +  L++++    +  +L+ MYA+C 
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCK 254

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLVSVL 227
           +L  A +VF  +  R+ V+W+++I G+       EA  LF  M  E        ++ S L
Sbjct: 255 QLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASAL 314

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
             C  L DL +G  +   + K+ +  +    ++L+ MY K G +  A   FD +  KD +
Sbjct: 315 RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           ++ A+++   QNG + EA ++F +M+   + PD  T++ ++ AC+ + AL  GK      
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434

Query: 348 SQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
             RGL           D++  CG ID + +VF+ MP  + VSWN MI+    +G   EA 
Sbjct: 435 IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEAT 494

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LF  M  +G A  P+DVTFI +++AC H+GLV EG+  FD M+  +G++P+ EHY CMV
Sbjct: 495 TLFLGMKNQGFA--PDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 552

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL AR G L EA+ F++ MP K D  V GALLGAC+  KN D+ ++V +++ ++    +G
Sbjct: 553 DLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTG 612

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           N+V+ S IF+    +D++A++R + + KG  K+PG SWI I+
Sbjct: 613 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEIN 654



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 22/425 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS-LKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F +I  P+  A+N +IR  +  W    H+ + LY  M R  + P+ +T+PFV  +C
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYS--WLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKAC 110

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L+ L  G ++H+     GL  D  VS +LI +Y RC +   AR VF ++  RD+V+WN
Sbjct: 111 SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWN 170

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           +M++GY+  G    A+     M++   L P+  TLVS+L      G L  G  +  + ++
Sbjct: 171 AMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLR 230

Query: 249 NKMDLN---FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
             ++ N     +G+AL+DMY KC  LV A RVF  M  ++ VTW+A+I  +       EA
Sbjct: 231 ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEA 290

Query: 306 IMLFNRMKYAGVNPDKITLIG-VLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
             LF  M   G+     T +   L  CAS+  L +G  +    ++ G+  D+        
Sbjct: 291 FNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G I++A   F+++ V + +S+ A++S    NG+A EA L+F++M  +     P+ 
Sbjct: 351 MYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM--QACNMEPDI 408

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T + ++ AC H   +  G+     +    GL  ++   + ++D+YA+ G +  +    +
Sbjct: 409 ATMVSLIPACSHLAALQHGKCSHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFD 467

Query: 474 RMPEK 478
           +MP +
Sbjct: 468 KMPAR 472



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 166/339 (48%), Gaps = 18/339 (5%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G+L  AR+VFD I   D  ++N++I  YS +G    A++L+  M      P++ T   VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  L DL  G+ +        +  + ++ +ALID+Y +C    PAR VF  M  +DVV
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 288 TWNAMITAYAQNGLSNEAIM-LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
            WNAM+  YA +G+ + AI  L +   + G+ P+  TL+ +L   A  GAL  G  +  Y
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 347 ASQRGLRH------------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             +  L              D++  C  +  A +VF  MPV N+V+W+A+I       R 
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EA  LF+ M  E G    +  +    L  C     +  G +L  L++ S G+       
Sbjct: 288 TEAFNLFKDMLVE-GLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTAS 345

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           + ++ +YA+AG ++EA  F + +  K D I  GALL  C
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGC 383



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 344 DKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           DK   Q+ L   I  G +  A +VF+ +P  +  ++NA+I A ++ G  H A+ L+  M 
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVD-EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
           +   A  PN  TF  VL AC  + LVD    R     +++ GL       + ++DLY R 
Sbjct: 93  RFRVA--PNKYTFPFVLKAC--SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRC 148

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGA 490
                A +   +MP + D +   A+L  
Sbjct: 149 ARFGPARNVFAKMPMR-DVVAWNAMLAG 175


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 279/513 (54%), Gaps = 29/513 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           A+ +F  +   +  A+N M+ G       +   +H L +  QM RL  +P+  T   +  
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRL--RPNASTLVALLP 121

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDH----------VSHSLITMYARCGKLDSARKVF 177
             A   AL  G SVH+   +  L  + +          +  +L+ MYA+CG L  AR+VF
Sbjct: 122 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 181

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLVSVLGSCGDLGDL 236
           D +  R+ V+W+++I G+       +A  LF  M  +        ++ S L +C  L  L
Sbjct: 182 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHL 241

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
            +G+ +   + K+ +  +   G++L+ MY K G +  A  +FD M  KD V+++A+++ Y
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-- 354
            QNG + EA ++F +M+   V PD  T++ ++ AC+ + AL  G+        RGL    
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 355 -------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                  D++  CG ID + +VF  MP  + VSWN MI+    +G   EA  LF  M+  
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNL 421

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G    P+ VTFI +LSAC H+GLV EG+  F +M   +GL P+ EHY CMVDL +R G L
Sbjct: 422 GFP--PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFL 479

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA++F++ MP + D  V  ALLGAC+  KN D+ ++V +++ E+    +GN+V+ S I+
Sbjct: 480 DEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIY 539

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +    +D++A++R + + +G  K+PGCSWI I+
Sbjct: 540 SAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 202/395 (51%), Gaps = 31/395 (7%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R  + P+N+T+PF   +C+ L   + G ++H      GL  D  VS +L+ MY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE--LFGRMREEEFLPDEITLVSVL 227
           L  A  +F  +  RDLV+WN+M++GY+  G    AV   L  +M+     P+  TLV++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 228 GSCGDLGDLVLGKWVEGFVV----------KNKMDLNFYMGSALIDMYGKCGALVPARRV 277
                 G L  G  V  + +          K+K+     +G+AL+DMY KCG+L+ ARRV
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG---VNPDKITLIGVLSACASI 334
           FDAM  ++ VTW+A+I  +       +A +LF  M   G   ++P  I     L ACAS+
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASL 238

Query: 335 GALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMI 383
             L +G+ +    ++ G+  D+  G+           ID A+ +F++M V + VS++A++
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           S    NGRA EA L+F++M  +     P+  T + ++ AC H   +  GR     +    
Sbjct: 299 SGYVQNGRAEEAFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR- 355

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           GL  ++   + ++D+YA+ G +  +      MP +
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 171/333 (51%), Gaps = 21/333 (6%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS- 128
           YA  +F  +   NE  ++ +I G      + + +  L+  M   GL    F  P    S 
Sbjct: 176 YARRVFDAMPARNEVTWSALIGGFVLC-SRMTQAFLLFKAMLAQGL---CFLSPTSIASA 231

Query: 129 ---CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              CA+L  L  G  +H+ + K G+  D    +SL++MYA+ G +D A  +FDE+  +D 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VS+++++SGY + G A+EA  +F +M+     PD  T+VS++ +C  L  L  G+   G 
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 351

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V+   +     + +ALIDMY KCG +  +R+VF+ M ++D+V+WN MI  Y  +GL  EA
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 411

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLR---HDIFC--- 358
             LF  M   G  PD +T I +LSAC+  G +  GK W        GL        C   
Sbjct: 412 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVD 471

Query: 359 -----GSIDDALKVFEDMPVTNEVS-WNAMISA 385
                G +D+A +  + MP+  +V  W A++ A
Sbjct: 472 LLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 504


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 290/548 (52%), Gaps = 39/548 (7%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
           S+LK C +     +IH   L        ++   +I L    K    A +LF ++   +  
Sbjct: 91  SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 150

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N MI G   +      +L L   ++ +    D+ T   +  +C      N GV++HS 
Sbjct: 151 SWNAMISGYCQSGNA-KEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSY 205

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K GL+ +                L   +KVFD +  RDL+SWNS+I  Y        A
Sbjct: 206 SIKHGLESE---------------LLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 250

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALID 263
           + LF  MR     PD +TL+S+      LGD+   + V+GF ++    L +  +G+A++ 
Sbjct: 251 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 310

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKI 322
           MY K G +  AR VF+ + N DV++WN +I+ YAQNG ++EAI ++N M+  G +  ++ 
Sbjct: 311 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 370

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T + VL AC+  GAL  G  +     + GL  D+F           CG ++DAL +F  +
Sbjct: 371 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 430

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  N V WN +I+   F+G   +A++LF+ M  EG   +P+ +TF+ +LSAC H+GLVDE
Sbjct: 431 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG--VKPDHITFVTLLSACSHSGLVDE 488

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G+  F++M + +G+ P  +HY CMVD+Y RAG L  A  F++ M  + D  + GALL AC
Sbjct: 489 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 548

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N D+ +   + L E+E  + G +V+ S ++A+   W+   ++R++   KG+ KTPG
Sbjct: 549 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 608

Query: 552 CSWIGIDD 559
            S + +D+
Sbjct: 609 WSSMEVDN 616



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/430 (30%), Positives = 213/430 (49%), Gaps = 38/430 (8%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F  I   + YA+N+MI G   A             M   GL PD  T+P V  +C  ++ 
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI- 100

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
              G  +H    K G   D +V+ SLI +Y+R   + +AR +FDE+  RD+ SWN+MISG
Sbjct: 101 --DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y + G AKEA+ L   +R      D +T+VS+L +C + GD   G  +  + +K+ ++  
Sbjct: 159 YCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE 214

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
                           L   ++VFD M  +D+++WN++I AY  N     AI LF  M+ 
Sbjct: 215 L---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRL 259

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------ID 362
           + + PD +TLI + S  + +G +   + V  +  ++G    DI  G+           +D
Sbjct: 260 SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVD 319

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  VF  +P T+ +SWN +IS  A NG A EA+ ++  M +EG  A  N  T++ VL A
Sbjct: 320 SARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA-ANQGTWVSVLPA 378

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C  AG + +G +L   +  + GL       + + D+Y + G L +A     ++P +V+ +
Sbjct: 379 CSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSV 436

Query: 483 VLGALLGACQ 492
               L+ AC 
Sbjct: 437 PWNTLI-ACH 445



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 132/257 (51%), Gaps = 14/257 (5%)

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR-MREEEFLPDEITLVSVLGSC 230
           S    FD I+ RD+ +WN MISGY + G + E +  F   M      PD  T  SVL +C
Sbjct: 37  SKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 96

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             + D   G  +    +K     + Y+ ++LI +Y +  A+  AR +FD M  +D+ +WN
Sbjct: 97  RTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWN 153

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           AMI+ Y Q+G + EA+ L N ++      D +T++ +LSAC   G  + G  +  Y+ + 
Sbjct: 154 AMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKH 209

Query: 351 GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
           GL  ++    + D  KVF+ M V + +SWN++I A   N +   A+ LF+ M       +
Sbjct: 210 GLESEL----LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLS--RIQ 263

Query: 411 PNDVTFIGVLSACVHAG 427
           P+ +T I + S     G
Sbjct: 264 PDCLTLISLASILSQLG 280


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 174/522 (33%), Positives = 284/522 (54%), Gaps = 23/522 (4%)

Query: 57  FLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK- 111
           F+   +IDL      F  A  +F ++   +  A+N M+ G       Y H++     M+ 
Sbjct: 136 FVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGM-YHHAIAHLLDMQD 194

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH---VSHSLITMYARCG 168
             GL+P+  T   +    A   AL  G S+H+   +  L++++    +  +L+ MYA+C 
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCK 254

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLVSVL 227
           +L  A +VF  +  R+ V+W+++I G+       EA  LF  M  E        ++ S L
Sbjct: 255 QLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASAL 314

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
             C  L DL +G  +   + K+ +  +    ++L+ MY K G +  A   FD +  KD +
Sbjct: 315 RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTI 374

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           ++ A+++   QNG + EA ++F +M+   + PD  T++ ++ AC+ + AL  GK      
Sbjct: 375 SYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV 434

Query: 348 SQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
             RGL           D++  CG ID + +VF+ MP  + VSWN MI+    +G   EA 
Sbjct: 435 IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEAT 494

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LF  M  +G A  P+DVTFI +++AC H+GLV EG+  FD M+  +G++P+ EHY CMV
Sbjct: 495 TLFLGMKNQGFA--PDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMV 552

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           DL AR G L EA+ F++ MP K D  V GALLGAC+  KN D+ ++V +++ ++    +G
Sbjct: 553 DLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTG 612

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           N+V+ S IF+    +D++A++R + + KG  K+PG SWI I+
Sbjct: 613 NFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEIN 654



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 216/425 (50%), Gaps = 22/425 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS-LKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F +I  P+  A+N +IR  +  W    H+ + LY  M R  + P+ +T+PFV  +C
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYS--WLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKAC 110

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L+ L  G ++H+     GL  D  VS +LI +Y RC +   AR VF ++  RD+V+WN
Sbjct: 111 SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWN 170

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           +M++GY+  G    A+     M++   L P+  TLVS+L      G L  G  +  + ++
Sbjct: 171 AMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLR 230

Query: 249 NKMDLN---FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
             ++ N     +G+AL+DMY KC  LV A RVF  M  ++ VTW+A+I  +       EA
Sbjct: 231 ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEA 290

Query: 306 IMLFNRMKYAGVNPDKITLIG-VLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
             LF  M   G+     T +   L  CAS+  L +G  +    ++ G+  D+        
Sbjct: 291 FNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLS 350

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                G I++A   F+++ V + +S+ A++S    NG+A EA L+F++M  +     P+ 
Sbjct: 351 MYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM--QACNMEPDI 408

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T + ++ AC H   +  G+     +    GL  ++   + ++D+YA+ G +  +    +
Sbjct: 409 ATMVSLIPACSHLAALQHGKCSHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFD 467

Query: 474 RMPEK 478
           +MP +
Sbjct: 468 KMPAR 472



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 166/339 (48%), Gaps = 18/339 (5%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G+L  AR+VFD I   D  ++N++I  YS +G    A++L+  M      P++ T   VL
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +C  L DL  G+ +        +  + ++ +ALID+Y +C    PAR VF  M  +DVV
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 288 TWNAMITAYAQNGLSNEAIM-LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
            WNAM+  YA +G+ + AI  L +   + G+ P+  TL+ +L   A  GAL  G  +  Y
Sbjct: 168 AWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAY 227

Query: 347 ASQRGLRH------------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             +  L              D++  C  +  A +VF  MPV N+V+W+A+I       R 
Sbjct: 228 CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRM 287

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
            EA  LF+ M  E G    +  +    L  C     +  G +L  L++ S G+       
Sbjct: 288 TEAFNLFKDMLVE-GLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIHADLTAS 345

Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           + ++ +YA+AG ++EA  F + +  K D I  GALL  C
Sbjct: 346 NSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGC 383



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)

Query: 344 DKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           DK   Q+ L   I  G +  A +VF+ +P  +  ++NA+I A ++ G  H A+ L+  M 
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVD-EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
           +   A  PN  TF  VL AC  + LVD    R     +++ GL       + ++DLY R 
Sbjct: 93  RFRVA--PNKYTFPFVLKAC--SALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRC 148

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGA 490
                A +   +MP + D +   A+L  
Sbjct: 149 ARFGPARNVFAKMPMR-DVVAWNAMLAG 175


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 272/490 (55%), Gaps = 27/490 (5%)

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++  FNVMI GL +  +    +L ++ +M+   L+P   T+  V  SC++   ++H   V
Sbjct: 251 DDITFNVMIGGLASVGRD-EEALIMFKEMQEACLRPTELTFVSVMSSCSSA-RVSH--QV 306

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K+G +    VS++ +TMY+ CG L +   VFD + E+DL+SWN +I  Y++  + 
Sbjct: 307 HAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFY 366

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           + A+  F +M+     PDE T+ S+L S   L ++V  K  +  V KN ++    + +AL
Sbjct: 367 RLAILAFLQMQRAGIEPDEFTIGSLLASSESL-EIV--KMFQALVSKNGLNSKIEVSNAL 423

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +  + K G +  A +VF+ M + ++++WN +I+ +  NG + + +  F  +  + + P+ 
Sbjct: 424 VSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNA 483

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------------CGSIDDALK 366
            TL  VLS CASI AL  GK +  Y     LR  +F               CG +D +L+
Sbjct: 484 YTLSIVLSICASISALRHGKQIHGYI----LRSGVFSVTSLGNALITMYAKCGDLDWSLR 539

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F  M   + VSWNAMISA A +G+  EA+  F+ M   GG  +P+  TF  VLSAC HA
Sbjct: 540 IFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGV-KPDQATFTAVLSACSHA 598

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLVD+G R+F+ M + +G  P ++H SC+VDL  RAG+L EA   +     K+   +   
Sbjct: 599 GLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWT 658

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           L  AC    N  + + V   LLEIE ++   YV+ S I+A    W+++A  R LM++  V
Sbjct: 659 LFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRV 718

Query: 547 SKTPGCSWIG 556
           +K PGCSWIG
Sbjct: 719 AKQPGCSWIG 728



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 218/458 (47%), Gaps = 36/458 (7%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNF-----LLIRIIDLKDFNYASLLFHQISRP 81
           LLS   K     +VQ++      N I+ P+      LL     L    YA  LF+Q  R 
Sbjct: 94  LLSFYAKSKDLVSVQRV-----FNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRM 148

Query: 82  NEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
               +N +I G   A  K++  +L L+ +M +LG++ D +T+  V   C+ L  L+ G  
Sbjct: 149 IPVVWNAIITG--CAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS-LELLDFGRE 205

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKM 198
           VH+ V K G      V ++L+TMY   GK+  A +VF+E      D +++N MI G + +
Sbjct: 206 VHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASV 265

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G  +EA+ +F  M+E    P E+T VSV+ SC       +   V    +K   +    + 
Sbjct: 266 GRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSAR---VSHQVHAQAIKMGFEACTPVS 322

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +A + MY  CG L     VFD +  KD+++WN +I  YAQ      AI+ F +M+ AG+ 
Sbjct: 323 NAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIE 382

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKV 367
           PD+ T+  +L   AS  +L++ K      S+ GL   I             G I+ A +V
Sbjct: 383 PDEFTIGSLL---ASSESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQV 439

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F +M   N +SWN +IS   FNG   + L  F  +       +PN  T   VLS C    
Sbjct: 440 FNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMS--TLKPNAYTLSIVLSICASIS 497

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
            +  G+++   +  S G+   +   + ++ +YA+ G L
Sbjct: 498 ALRHGKQIHGYILRS-GVFSVTSLGNALITMYAKCGDL 534



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 188/417 (45%), Gaps = 49/417 (11%)

Query: 101 SHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           S S++L+ Q+     LKPD+FT      +CANL     G  +H+   + GL    HV ++
Sbjct: 34  SASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNT 93

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG-------------------- 199
           L++ YA+   L S ++VF+EI   D+ SW +++S  +K+G                    
Sbjct: 94  LLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVW 153

Query: 200 -----------YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
                      + + A+ LF  M +     D+ T  SVL  C  L  L  G+ V   V+K
Sbjct: 154 NAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLC-SLELLDFGREVHTLVIK 212

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITAYAQNGLSNEAI 306
               +   + +AL+ MY   G +  A  VF+   +   D +T+N MI   A  G   EA+
Sbjct: 213 TGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEAL 272

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACAS--------IGALDLGKWVDKYASQRGLRHDIFC 358
           ++F  M+ A + P ++T + V+S+C+S          A+ +G       S   +     C
Sbjct: 273 IMFKEMQEACLRPTELTFVSVMSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSC 332

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G++     VF+ +   + +SWN +I   A       A+L F +M + G    P++ T   
Sbjct: 333 GNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAG--IEPDEFTIGS 390

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           +L++     +V    ++F  + S  GL  K E  + +V  +++ G + +A+     M
Sbjct: 391 LLASSESLEIV----KMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNM 443



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 68/349 (19%)

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKW 241
             L+  N +++  ++  +   +V+LF ++    +L PD  TL S L +C +L     G  
Sbjct: 15  EQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQ 74

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT------------- 288
           +  + ++  +    ++G+ L+  Y K   LV  +RVF+ + N DV +             
Sbjct: 75  LHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQ 134

Query: 289 ------------------WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
                             WNA+IT  A+N  +  A+ LF  M   GV  DK T   VLS 
Sbjct: 135 IGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSL 194

Query: 331 CASIGALDLGKWVDKYASQRG--LRHDIF---------CGSIDDALKVFEDMPVT--NEV 377
           C S+  LD G+ V     + G  +R  +           G + DA +VFE+   T  +++
Sbjct: 195 C-SLELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDI 253

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC--------VHAGLV 429
           ++N MI  LA  GR  EAL++F+ M +     RP ++TF+ V+S+C        VHA  +
Sbjct: 254 TFNVMIGGLASVGRDEEALIMFKEMQE--ACLRPTELTFVSVMSSCSSARVSHQVHAQAI 311

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             G      +S++             + +Y+  G+L       +R+ EK
Sbjct: 312 KMGFEACTPVSNA------------AMTMYSSCGNLHAVHMVFDRLEEK 348


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 182/548 (33%), Positives = 286/548 (52%), Gaps = 25/548 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+L  C   K +    Q+H+ ++ N      F+   ++D+         A   F  I   
Sbjct: 433 SILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNR 492

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++NV+I G     +    +  L+ +M  LG+ PD  +   +  +CA++  L  G  V
Sbjct: 493 DNVSWNVIIVGYVQE-EDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQV 551

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K G +   +   SLI MYA+CG +DSA K+   + ER +VS N++I+GY+++   
Sbjct: 552 HCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINL- 610

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSA 260
           ++AV LF  M  E     EIT  S+L +C +   L LG+ +   ++K  + L+  ++G +
Sbjct: 611 EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVS 670

Query: 261 LIDMYGKCGALVPARRVFDAMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           L+ MY        A  +F    N K  V W AMI+  +QN  S  A+ L+  M+   V P
Sbjct: 671 LLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLP 730

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D+ T +  L ACA + ++  G          G   D             CG +  +++VF
Sbjct: 731 DQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVF 790

Query: 369 EDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           ++M    +V SWN+MI   A NG A +AL +F+ M +      P+DVTF+GVL+AC H+G
Sbjct: 791 KEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQS--HVTPDDVTFLGVLTACSHSG 848

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            V EGR +FD+M + +G+ P+++H +CMVDL  R G L EA +F+ ++  + D  V   +
Sbjct: 849 RVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATM 908

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LGAC+   +    Q+  + L+E+E  NS  YV+ S I+A    WD+   +R  MREKGV 
Sbjct: 909 LGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVK 968

Query: 548 KTPGCSWI 555
           K PGCSWI
Sbjct: 969 KLPGCSWI 976



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 219/388 (56%), Gaps = 15/388 (3%)

Query: 63  IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
           +DL   + AS LF ++   N  A+N+MI G          +++ +  M++ G+K    T 
Sbjct: 272 VDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGV-EAIEFFQNMRKAGIKSTRSTL 330

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             V  + A+L AL+ G+ VH+   K GL  + +V  SL++MYA+CGK+++A+KVFD + E
Sbjct: 331 GSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNE 390

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +++V WN+M+ GY + GYA E +ELF  M+   F PD+ T  S+L +C  L  L LG  +
Sbjct: 391 QNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQL 450

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
              ++KNK   N ++G+AL+DMY K GAL  AR+ F+ + N+D V+WN +I  Y Q    
Sbjct: 451 HSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDE 510

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----- 357
            EA  LF RM   G+ PD+++L  +LSACAS+  L+ GK V   + + G    ++     
Sbjct: 511 VEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSL 570

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                 CG+ID A K+   MP  + VS NA+I+  A      +A+ LF  M  EG     
Sbjct: 571 IDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYA-QINLEQAVNLFRDMLVEG--INS 627

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLM 439
            ++TF  +L AC     ++ GR++  L+
Sbjct: 628 TEITFASLLDACHEQQKLNLGRQIHSLI 655



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 202/417 (48%), Gaps = 47/417 (11%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
            V V   + K+G + D     ++I  Y   G+LD+A  +F  +  R++V+WN MISG++K
Sbjct: 245 AVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAK 304

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            GY  EA+E F  MR+        TL SVL +   L  L  G  V    +K  +  N Y+
Sbjct: 305 GGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYV 364

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           GS+L+ MY KCG +  A++VFD +  ++VV WNAM+  Y QNG +NE + LF  MK  G 
Sbjct: 365 GSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGF 424

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALK 366
            PD  T   +LSACA +  LDLG  +     +     ++F            G+++DA +
Sbjct: 425 YPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQ 484

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
            FE +   + VSWN +I          EA  LF RM+  G    P++V+   +LSAC   
Sbjct: 485 QFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLG--ILPDEVSLASILSACASV 542

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-------- 478
             +++G+++   +S   G   K    S ++D+YA+ G +  A   +  MPE+        
Sbjct: 543 RGLEQGKQV-HCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNAL 601

Query: 479 -------------------------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
                                      EI   +LL AC +Q+  ++ +++  L+L++
Sbjct: 602 IAGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKM 658



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 172/585 (29%), Positives = 261/585 (44%), Gaps = 112/585 (19%)

Query: 26  KLLSLLKKCPS-----TKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           K  SL  + P      + T + IH Q L         L   I+DL     D +YA   F 
Sbjct: 59  KTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFK 118

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTYPFVFISCANLLAL 135
           Q+   +  A+N ++     + Q + H +  Y+ +    G+ P+ FT+  V  SCA L  +
Sbjct: 119 QLEDKDILAWNSILS--MHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMV 176

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
             G  VH +V K+G +   +   +LI MYA+C  L  AR +FD   E D VSW SMI GY
Sbjct: 177 KCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGY 236

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            K+G  +EAV++F  M +    PD++  V+V+ +  DLG L            N  DL  
Sbjct: 237 IKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRL-----------DNASDL-- 283

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
                                 F  M N++VV WN MI+ +A+ G   EAI  F  M+ A
Sbjct: 284 ----------------------FSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKA 321

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           G+   + TL  VLSA AS+ ALD G  V   A ++GL  +++           CG ++ A
Sbjct: 322 GIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAA 381

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            KVF+ +   N V WNAM+     NG A+E + LF  M   G    P+D T+  +LSAC 
Sbjct: 382 KKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCG--FYPDDFTYSSILSACA 439

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYS------CMVDLYARAGHLSEA---------- 468
               +D G +L         +I K++  S       +VD+YA++G L +A          
Sbjct: 440 CLKYLDLGHQL-------HSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNR 492

Query: 469 ----WD-----FVERMPEK---------------VDEIVLGALLGACQKQKNTDVSQRVM 504
               W+     +V+   E                 DE+ L ++L AC   +  +  ++V 
Sbjct: 493 DNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVH 552

Query: 505 QLLLEIESSN---SGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
            L ++        SG+ +I   ++A     D + K+ A M E+ V
Sbjct: 553 CLSVKTGQETKLYSGSSLID--MYAKCGAIDSAHKILACMPERSV 595


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 249/456 (54%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L P    Y  +  +CA    L    ++H+ + +  L  D  + +SLI MY +CG +  AR
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
            VFD++  RD+VSW  +I+GY++     EA+ L   M    F P+  T  S+L + G  G
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
              +G+ +    VK   D + Y+GSAL+DMY +C  +  A  VFD +V+K+ V+WNA+I 
Sbjct: 176 GCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIA 235

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+       +M F  M+  G      T   + SA A IGAL+ G+WV  +  + G + 
Sbjct: 236 GFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKL 295

Query: 355 DIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             F            GS+ DA KVF+ M   + V+WN M++ALA  G   EA+  FE + 
Sbjct: 296 TAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIR 355

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K G   + N +TF+ VL+AC H GLV EG+  FD+M   + + P+ +HY   VDL  RAG
Sbjct: 356 KCG--IQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAG 412

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA  FV +MP +    V GALLGAC+  KN  + Q     + E++  ++G  V+   
Sbjct: 413 LLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYN 472

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+   W+D+A++R +M+  GV K P CSW+ I++
Sbjct: 473 IYASTGKWNDAARVRKMMKATGVKKEPACSWVQIEN 508



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 186/376 (49%), Gaps = 20/376 (5%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S++  C   K +   + IH  +  + +    FLL  +I +       + A  +F ++   
Sbjct: 65  SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSR 124

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++  +I G    +   + ++ L   M R   +P+ FT+  +  +       + G  +
Sbjct: 125 DVVSWTYLIAGYAQNYMP-AEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQM 183

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K   DED +V  +L+ MYARC ++D A  VFD +  ++ VSWN++I+G+++    
Sbjct: 184 HALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADG 243

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +  +  F  M+   F     T  S+  +   +G L  G+WV   ++K+   L  ++G+ +
Sbjct: 244 ETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTM 303

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY K G++V AR+VFD M  +D+VTWN M+TA AQ GL  EA+  F  ++  G+  ++
Sbjct: 304 LGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQ 363

Query: 322 ITLIGVLSACASIGALDLGK----WVDKYASQRGLRHDIF-------CGSIDDALKVFED 370
           IT + VL+AC+  G +  GK     +  Y  Q  + H +         G + +AL     
Sbjct: 364 ITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFK 423

Query: 371 MPVTNEVS-WNAMISA 385
           MP+    + W A++ A
Sbjct: 424 MPMEPTAAVWGALLGA 439



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 138/287 (48%), Gaps = 15/287 (5%)

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           E  P      S++ +C    +L   + +   + ++ +  + ++ ++LI MY KCGA+  A
Sbjct: 55  ELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDA 114

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           R VFD M ++DVV+W  +I  YAQN +  EAI L   M  A   P+  T   +L A  + 
Sbjct: 115 RHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGAC 174

Query: 335 GALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMI 383
           G   +G+ +   A +     D++ GS           +D A+ VF+ +   NEVSWNA+I
Sbjct: 175 GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALI 234

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           +  A        L+ F  M + G  A     T+  + SA    G +++GR +   +  S 
Sbjct: 235 AGFARKADGETTLMKFAEMQRNGFGA--THFTYSSMFSAFARIGALEQGRWVHAHLIKS- 291

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           G    +   + M+ +YA++G + +A    +RM +K D +    +L A
Sbjct: 292 GQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM-DKRDLVTWNTMLTA 337


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 162/467 (34%), Positives = 257/467 (55%), Gaps = 14/467 (2%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVF-ISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHS 159
            +L  +  M RLGL+P++FT+P  F  + +       G  +H+   + G L +D  VS +
Sbjct: 102 QALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCA 161

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
            + MY + G L  AR++FDE+  R++V+WN++++     G   E VE +  +R    +P+
Sbjct: 162 ALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPN 221

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
            +++ +   +C  + +L LG+   GFV K     +  + ++++D YGKC  +  AR VFD
Sbjct: 222 VVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFD 281

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M  ++ V+W +M+ AYAQNG   EA  ++   + AG  P    +  VL+ CA +  LDL
Sbjct: 282 GMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDL 341

Query: 340 GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G+ +   A +  +  +IF           CG I+DA +VF +MP  N V+WNAMI   A 
Sbjct: 342 GRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAH 401

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
            G AH AL +F++M   G    PN +T + VL+AC   GL  EG  LF  M   FG+ P+
Sbjct: 402 IGDAHNALSVFDKMIM-GQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPR 460

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508
            EHY+C+VDL  RAG    A+  ++ MP +    V GALLG C+    T++ +   + L 
Sbjct: 461 IEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLF 520

Query: 509 EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
           E++  +SGN+V+ S + A+   W ++  +R  M+  G+ K PG SWI
Sbjct: 521 ELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWI 567



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 178/348 (51%), Gaps = 19/348 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   N  A+N ++       +    +++ Y+ ++  G  P+  +    F +CA
Sbjct: 175 ARRLFDEMPNRNVVAWNAVMTNAVLDGRPL-ETVEAYFGLRGAGGMPNVVSVCAFFNACA 233

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +  L+ G   +  V K G  +D  VS+S++  Y +C  +  AR VFD +  R+ VSW S
Sbjct: 234 GMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCS 293

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M+  Y++ G  +EA  ++   R     P +  + SVL +C  L  L LG+ +    V++ 
Sbjct: 294 MVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSC 353

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D N ++ SAL+DMYGKCG +  A +VF  M  +++VTWNAMI  YA  G ++ A+ +F+
Sbjct: 354 IDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFD 413

Query: 311 RMKYAG-VNPDKITLIGVLSACASIGALDLG-------KWVDKYASQRGLRH-----DIF 357
           +M       P+ ITL+ VL+AC+  G    G       KW  ++  +  + H     D+ 
Sbjct: 414 KMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKW--RFGIEPRIEHYACVVDLL 471

Query: 358 C--GSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERM 402
           C  G  + A K+ + MP+   +S W A++     +G+     +  E++
Sbjct: 472 CRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKL 519


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 274/513 (53%), Gaps = 63/513 (12%)

Query: 103 SLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
           +L+++ +M    G +PD+ T   V   CA++   + G   H       + ++  V + L+
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---- 217
            MYA+ G +D A  VF  +  +D+VSWN+M++GYS++G  ++AV LF +M+EE+      
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVV 331

Query: 218 -------------------------------PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
                                          P+E+TL+SVL  C  +G L+ GK +  + 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 247 VKNKMDL--------NFYMGSALIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITAY 296
           +K  MDL        N  + + LIDMY KC  +  AR +FD++  K  DVVTW  MI  Y
Sbjct: 392 IKYPMDLRKNGHGDENMVI-NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 297 AQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           +Q+G +N+A+ L + M  +     P+  T+   L ACAS+ AL +GK +  YA +     
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNA 510

Query: 355 ----------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                     D++  CG I DA  VF++M   NEV+W ++++    +G   EAL +FE M
Sbjct: 511 VPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEM 570

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            + G   + + VT + VL AC H+G++D+G   F+ M + FG+ P  EHY+C+VDL  RA
Sbjct: 571 RRIG--FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRA 628

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L+ A   +E MP +   +V  ALL  C+     ++ +   + + E+ S+N G+Y + S
Sbjct: 629 GRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLS 688

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            ++AN   W D  ++R+LMR KG+ K PGCSW+
Sbjct: 689 NMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWV 721



 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 270/549 (49%), Gaps = 68/549 (12%)

Query: 3   LRAKAYS-RHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML---INFIQKPNFL 58
           LRA A S +HL  +  +  +L  E     + KC +   V+ IH ++L   I  +   + L
Sbjct: 8   LRAAAKSHQHLKVSLFSTSAL--EITPPFIHKCKTISQVKLIHQKLLSFGILTLNLTSHL 65

Query: 59  LIRIIDLKDFNYASLLFHQI--SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
           +   I L   ++A  L  +   S    Y +N +IR       + +  L  +  M  L   
Sbjct: 66  ISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNN-GRANKCLSSFCLMHSLSWT 124

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           PDN+T+PFVF +C  + ++  G S H+     G   +  V ++L+ MY+RCG L  ARKV
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE-EFLPDEITLVSVLGSCGDLGD 235
           FDE+   D+VSWNS+I  Y+K+G  K A+E+F +M  E  F PD+ITLV+VL  C  +G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM--- 292
             LGK   GF V ++M  N ++G+ L+DMY K G +  A  VF  M  KDVV+WNAM   
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 293 --------------------------------ITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
                                           I+ YAQ GL  EA+ +  +M  +G+ P+
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQ-----RGLRH-----------DIF--CGSID 362
           ++TLI VLS CAS+GAL  GK +  YA +     R   H           D++  C  +D
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 363 DALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
            A  +F+ +       V+W  MI   + +G A++AL L   M +E    RPN  T    L
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 421 SACVHAGLVDEGRRLFDL-MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
            AC     +  G+++    + +    +P     +C++D+YA+ G + +A    + M EK 
Sbjct: 485 VACASLAALSIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNMMEK- 542

Query: 480 DEIVLGALL 488
           +E+   +L+
Sbjct: 543 NEVTWTSLM 551


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/414 (37%), Positives = 247/414 (59%), Gaps = 18/414 (4%)

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
           +++I+ YA  G+++ ARK+FDE+  RD  SWN++ISGY   G+  EA++LF  M+E E  
Sbjct: 133 NTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESS 192

Query: 218 P-DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             +  TL S L +   +  L  GK + G+++++ ++L+  + +AL+D+YGKCG+L  AR 
Sbjct: 193 NCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARG 252

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +FD M +KD+V+W  MI    ++G   E   LF  +  +GV P++ T  GVL+ACA + A
Sbjct: 253 IFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAA 312

Query: 337 LDLGKWVDKYASQRGLRHDIF-------------CGSIDDALKVFEDMPVTNEVSWNAMI 383
             +GK V  Y ++ G  +D F             CG+ + A +VF  MP  + VSW ++I
Sbjct: 313 EQMGKEVHGYMTRVG--YDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLI 370

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
              A NG+   AL  FE + + G   +P+++TF+GVLSAC HAGLVD G   F  +    
Sbjct: 371 VGYAQNGQPDMALQFFESLLRSG--TKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKH 428

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           GL+  ++HY+C++DL AR+G   EA + ++ MP K D+ +  +LLG C+   N ++++R 
Sbjct: 429 GLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERA 488

Query: 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            + L E+E  N   Y+  S I+AN  +W +  K+R  M  +G+ K PG SWI I
Sbjct: 489 AKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEI 542



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 221/443 (49%), Gaps = 23/443 (5%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
           ++  +L+ +  KC S    Q +  ++    +   N ++    ++     A  LF ++   
Sbjct: 99  VISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR 158

Query: 82  NEYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDN-FTYPFVFISCANLLALNHGV 139
           + +++N +I G ++  W  Y  +L L+  M+       N FT      + A + +L  G 
Sbjct: 159 DNFSWNAVISGYVSQGW--YMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGK 216

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +H  + + GL+ D+ V  +L+ +Y +CG L+ AR +FD++ ++D+VSW +MI    + G
Sbjct: 217 EIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDG 276

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             KE   LF  +      P+E T   VL +C DL    +GK V G++ +   D   +  S
Sbjct: 277 RKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAAS 336

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+ +Y KCG    ARRVF+ M   D+V+W ++I  YAQNG  + A+  F  +  +G  P
Sbjct: 337 ALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKP 396

Query: 320 DKITLIGVLSACASIGALDLG-KWVDKYASQRGLRH--DIFCGSID---------DALKV 367
           D+IT +GVLSAC   G +D+G ++      + GL H  D +   ID         +A  +
Sbjct: 397 DEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENI 456

Query: 368 FEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVH 425
            ++MP+  ++  W +++       R H  + L ER +K      P N  T+I + +   +
Sbjct: 457 IDNMPMKPDKFLWASLLGGC----RIHGNIELAERAAKALFELEPENPATYITLSNIYAN 512

Query: 426 AGLVDEGRRLFDLMSSSFGLIPK 448
           AGL  E  ++ + M +  G++ K
Sbjct: 513 AGLWTEETKVRNDMDNR-GIVKK 534



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 153/368 (41%), Gaps = 59/368 (16%)

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +  +I  + +    KEAV+   R+ +    P      +++ +C     L LGK V     
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIPQ----PSPRLYSTLIAACLRHRKLELGKRVHAHTK 90

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
            +       + + LI MY KCG+LV A+ +FD +  KD+ +WN MI+ YA  G   +A  
Sbjct: 91  ASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIG----ALDL------------------------ 339
           LF+ M +     D  +   V+S   S G    ALDL                        
Sbjct: 151 LFDEMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAA 206

Query: 340 --------GKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
                   GK +  Y  + GL  D             CGS+++A  +F+ M   + VSW 
Sbjct: 207 AAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWT 266

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
            MI     +GR  E   LF  +   G   RPN+ TF GVL+AC        G+ +   M 
Sbjct: 267 TMIHRCFEDGRKKEGFSLFRDLM--GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYM- 323

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS 500
           +  G  P S   S +V +Y++ G+   A     +MP + D +   +L+    +    D++
Sbjct: 324 TRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQPDMA 382

Query: 501 QRVMQLLL 508
            +  + LL
Sbjct: 383 LQFFESLL 390


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 172/499 (34%), Positives = 272/499 (54%), Gaps = 51/499 (10%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS----VHSSVFKIGLDEDDHVSHSLIT 162
           Y +M   G +PD +T+P +  + A     +   +    VH+ V ++G+  + HV+ SL+ 
Sbjct: 7   YARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVA 66

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
            Y   G   +AR +  E      V+WN++ISG+++ G   E+   F  M      P  +T
Sbjct: 67  AYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVT 124

Query: 223 LVSVLGSCGD-LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC------------- 268
            VSVL +CG    D++LG  V G VV + +  +  + +AL+DMY +C             
Sbjct: 125 YVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGM 184

Query: 269 ------------------GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
                             G +  AR +FD M  +D V+W AMI  Y       EA+ +F 
Sbjct: 185 QVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFR 244

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+Y+ V+ D+ T++ V++ACA +GAL++G+WV  Y S++G++ D F           CG
Sbjct: 245 EMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCG 304

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SI+ AL VF+ M   ++ +W A+I  LA NG   EA+ +F RM +   +  P++VTFIGV
Sbjct: 305 SIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRV--SETPDEVTFIGV 362

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC HAGLVD+GR  F  M  ++ + P   HY C++DL  RAG ++EA D +++MP   
Sbjct: 363 LTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTP 422

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           +  + G LL AC+   N+++ + V + LLE++  NS  Y++ S I+A    W+D  ++R 
Sbjct: 423 NSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRH 482

Query: 540 LMREKGVSKTPGCSWIGID 558
            + EKG+ K PGCS I +D
Sbjct: 483 AIMEKGIKKEPGCSLIEMD 501



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 4/296 (1%)

Query: 20  PSLLREK-LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI 78
           P L  E  L+ +  +C    +  ++   M +  +     LL  +  L   + A  LF ++
Sbjct: 156 PDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRM 215

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
              +  ++  MI G   A  ++  +L+++ +M+   +  D FT   V  +CA L AL  G
Sbjct: 216 PERDTVSWTAMIDGYVWA-ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMG 274

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             V   + + G+  D  V ++LI MY++CG ++ A  VF  +  RD  +W ++I G +  
Sbjct: 275 EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVN 334

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKNKMDLNFYM 257
           GY +EA+E+F RM      PDE+T + VL +C   G +  G+ +    +    +  N   
Sbjct: 335 GYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVH 394

Query: 258 GSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
              +ID+ G+ G +  A    D M +  +   W  ++ A   +G S    ++  R+
Sbjct: 395 YGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERL 450


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 281/561 (50%), Gaps = 85/561 (15%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP------DNF 120
           +   A  LF+++   N  A+N MI G      +   ++ L+   K L L P      D F
Sbjct: 119 NLEVARRLFNEMPWKNGIAWNSMIHGYACN-GRPKEAVGLF---KDLSLNPLERFCGDTF 174

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
               V  +C NL AL+ G  +H+ +    ++ D  +  SL+ +Y +CG +DSA  V + +
Sbjct: 175 VLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLM 234

Query: 181 RERD-------------------------------LVSWNSMISGYSKMGYAKEAVELFG 209
           +E D                               +V WNSMISGY     A EA+ELF 
Sbjct: 235 KEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFN 294

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC- 268
            MR +    D  T  SVL +C  LG +  G  V   V K     +  + SAL+DMY KC 
Sbjct: 295 NMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCR 354

Query: 269 ------------------------------GALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
                                         G +  AR++FD M +K +++WN+MI  ++Q
Sbjct: 355 RPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQ 414

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           N    EA+ LF  M   G+  DK +L GV+SACASI +L+LG+ +   A+  GL  D   
Sbjct: 415 NACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQII 474

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG ++   K+F+ M  ++EV WN+M+   A NG   EAL +F++M   G 
Sbjct: 475 STSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVG- 533

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
             +P D+TF+GVLSAC H GLV+EGR+ F  M   + + P  EHYSCMVDLYARAG L +
Sbjct: 534 -VQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLED 592

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           A + +E+MP K D  +  ++L  C    N  + ++V + +++++  NSG YV  S I+A 
Sbjct: 593 AMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYAT 652

Query: 528 LKMWDDSAKMRALMREKGVSK 548
            + W  SA++R LM +K + K
Sbjct: 653 FEDWGRSAQVRKLMYDKKIPK 673



 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 276/518 (53%), Gaps = 22/518 (4%)

Query: 56   NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
            N  L   +   +   A  +F ++ + +  ++N MI G  + +  +  + + + +M++ G+
Sbjct: 780  NIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVS-FGLFDDAFRFFSEMQKAGI 838

Query: 116  KPDNFTYPFV--FISCANLLALNHGVSVHSSVFKIGLDEDDHV-SHSLITMYARCGKLDS 172
            +P  FTY  +  F+S A       G  +H+S+ + G+D  + V  +SLI MY + G +D 
Sbjct: 839  RPSGFTYSTLLSFVSSAC-----RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDY 893

Query: 173  ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
            A  VF  + E D++SWNS+I    K GY   A+  F  MR   + PD+ T+ +V+  C +
Sbjct: 894  AFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSN 953

Query: 233  LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
            L DL  G+ +    ++     N  + SA ID++ KC  L  + RVF+ +   D V  NAM
Sbjct: 954  LQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAM 1013

Query: 293  ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
            I++YA +G    A+ LF       + P + TL  VLSA + +  +D G  +     + GL
Sbjct: 1014 ISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGL 1073

Query: 353  RHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
              D+   S           ID A+K F  +   + +SWN MI  LA+NGR  +AL +F+ 
Sbjct: 1074 ESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKE 1133

Query: 402  MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
            +    G   P+++T  GVL AC   GLVDEG  +F  M   +G+IP  EHY+C+VD+ +R
Sbjct: 1134 LLI--GGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSR 1191

Query: 462  AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
             G L EA D VE MP +   ++ G+LL AC+   +   ++RV + ++E+E  +S  Y++ 
Sbjct: 1192 GGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVL 1251

Query: 522  SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++ +     W+   ++   M+EKGV K  GCSWIGI +
Sbjct: 1252 AQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSWIGIKN 1289



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 219/494 (44%), Gaps = 120/494 (24%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++ + N +++N MI G   +  K   SL+L+  M       D F++  V     
Sbjct: 61  AQQLFEEMPKRNCFSWNTMIEGYLKSGSK-GKSLELFDSMPH----KDAFSWNVV----- 110

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                                         I+ +A+ G L+ AR++F+E+  ++ ++WNS
Sbjct: 111 ------------------------------ISGFAKEGNLEVARRLFNEMPWKNGIAWNS 140

Query: 191 MISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           MI GY+  G  KEAV LF  +     E F  D   L +V+G+C +LG L  GK +   +V
Sbjct: 141 MIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIV 200

Query: 248 KNKMDLNFYMGSALIDMYGKCG---------------------ALVP----------ARR 276
            ++++ +  +GS+L+++YGKCG                     AL+           ARR
Sbjct: 201 VDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARR 260

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F    N  VV WN+MI+ Y  N  + EA+ LFN M+  GV  D  T   VLSAC+++G 
Sbjct: 261 IFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGI 320

Query: 337 LDLGKWVDKYASQRGLRHDIF--------------------------------------- 357
           +D G  V  +  + G  +DI                                        
Sbjct: 321 IDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITV 380

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG IDDA ++F+ MP  + +SWN+MI   + N    EAL LF  M+K G   R +  
Sbjct: 381 YSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG--LRMDKF 438

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           +  GV+SAC     ++ G ++F   ++  GL       + +VD Y + G +       +R
Sbjct: 439 SLAGVISACASISSLELGEQIF-ARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDR 497

Query: 475 MPEKVDEIVLGALL 488
           M  K DE+   ++L
Sbjct: 498 M-MKSDEVPWNSML 510



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 179/336 (53%), Gaps = 18/336 (5%)

Query: 145  VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
            VF+  +D++    +  +  + R G+L+ AR VFDE+ +RD+VSWN+MISGY   G   +A
Sbjct: 767  VFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDA 826

Query: 205  VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALID 263
               F  M++    P   T  ++L     +     GK +   +++N +DL N  +G++LI 
Sbjct: 827  FRFFSEMQKAGIRPSGFTYSTLLSF---VSSACRGKQIHASMIRNGVDLSNVVVGNSLIG 883

Query: 264  MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
            MYGK G +  A  VF  M   D+++WN++I +  ++G  N A+  F  M+  G +PD+ T
Sbjct: 884  MYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFT 943

Query: 324  LIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMP 372
            +  V++ C+++  L+ G+ +     + G            D+F  C  ++D+++VFE++ 
Sbjct: 944  VSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIY 1003

Query: 373  VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
              + V  NAMIS+ A++G    AL LF    +E    RP + T   VLSA      VD+G
Sbjct: 1004 QWDSVLCNAMISSYAWHGFGENALQLFVLTLREN--LRPTEFTLSIVLSAVSILLPVDQG 1061

Query: 433  RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             ++  L+  S GL       S +V++YA+ G +  A
Sbjct: 1062 SQIHSLVVKS-GLESDVIVASSLVEMYAKFGLIDSA 1096



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 162/357 (45%), Gaps = 61/357 (17%)

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           +L   LGSC + G +  G+ +    +K+  +     +G+ L+ MY +C ++  A+++F+ 
Sbjct: 8   SLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  ++  +WN MI  Y ++G   +++ LF+ M +     D  +   V+S  A  G L++ 
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGFAKEGNLEVA 123

Query: 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +                        ++F +MP  N ++WN+MI   A NGR  EA+ LF+
Sbjct: 124 R------------------------RLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFK 159

Query: 401 RMSKEGGAARPNDVTFI--GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH----YSC 454
            +S         D TF+   V+ AC + G +D G+++   +     ++ + E      S 
Sbjct: 160 DLSLNPLERFCGD-TFVLATVVGACTNLGALDCGKQIHARI-----VVDEVEFDSVLGSS 213

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL----LLEI 510
           +V+LY + G +  A   +  M E  D   L AL+         + ++R+  L     + +
Sbjct: 214 LVNLYGKCGDIDSANHVLNLMKEP-DAFSLSALISGYASCGRMNDARRIFCLKSNXCVVL 272

Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV--------SKTPGCSWIGIDD 559
            +S    YV +++    L+++++       MR KGV        S    CS +GI D
Sbjct: 273 WNSMISGYVANNEALEALELFNN-------MRRKGVQEDYSTFASVLSACSTLGIID 322



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 121/257 (47%), Gaps = 19/257 (7%)

Query: 246  VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            V ++ +D N    +  +  + + G L  AR VFD M  +DVV+WN MI+ Y   GL ++A
Sbjct: 767  VFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDA 826

Query: 306  IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR-HDIFCGS---- 360
               F+ M+ AG+ P   T   +LS  +S      GK +     + G+   ++  G+    
Sbjct: 827  FRFFSEMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASMIRNGVDLSNVVVGNSLIG 883

Query: 361  -------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
                   +D A  VF  M   + +SWN++I +   +G  + AL  F  M   G +  P+ 
Sbjct: 884  MYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYS--PDQ 941

Query: 414  VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
             T   V++ C +   +++G ++F L     G +  S   S  +DL+++   L ++    E
Sbjct: 942  FTVSTVITVCSNLQDLEKGEQIFAL-CIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFE 1000

Query: 474  RMPEKVDEIVLGALLGA 490
             +  + D ++  A++ +
Sbjct: 1001 EI-YQWDSVLCNAMISS 1016


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 177/495 (35%), Positives = 255/495 (51%), Gaps = 68/495 (13%)

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEIRERD 184
           F SC     L     +H+   K G  +D   +  +I   A   + +D AR VF ++ E +
Sbjct: 26  FTSCKTPRDLKQ---LHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPN 82

Query: 185 LVSWNSMISGYSKMG---YAKEAVELFGRMR-EEEFLPDEITLVSVLGSCGDLGDLVLGK 240
              WN+++   ++        EA+ LF  M  +    P+  T  SVL +C     L  GK
Sbjct: 83  CFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGK 142

Query: 241 WVEGFVVK-----------------------------------------------NKMDL 253
            + G +VK                                                K D 
Sbjct: 143 QIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDG 202

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  + + +ID   + G +  A+ +FD M  + VV+WN MI+ YAQNG   EAI LF  M+
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            + ++P+ +TL+ VL A A IGAL+LGKW+  YA +  +  D             CGSID
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSID 322

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            AL+VFE +P  N ++W+A+I A A +GRA +A++ F  M K G    PNDV +IG+LSA
Sbjct: 323 KALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG--VTPNDVAYIGILSA 380

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLV+EGR  F  M    GL P+ EHY CMVDL  RAGHL EA + +  MP + D++
Sbjct: 381 CSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDV 440

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +  ALLGAC+  KN  + +RV + L+E+   +SG+YV  S ++A+L  W+  A++R  M+
Sbjct: 441 IWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMK 500

Query: 543 EKGVSKTPGCSWIGI 557
              + K PGCSWI I
Sbjct: 501 GMDIRKDPGCSWIEI 515



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/473 (29%), Positives = 236/473 (49%), Gaps = 77/473 (16%)

Query: 9   SRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML-INFIQKP----NFLLIRII 63
           +R L F+    P L+  K  +    C + + ++Q+H   +    IQ P      +     
Sbjct: 9   NRTLNFSP--QPPLILSKPFT---SCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAF 63

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKY--SHSLKLYYQMKRLG-LKPDNF 120
             +D +YA  +F Q+  PN + +N ++R L     ++  S +L L+  M   G +KP+ F
Sbjct: 64  SSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRF 123

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC------------- 167
           T+P V  +CA    L  G  +H  + K G  ED+ V  +L+ MY  C             
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 168 ----------------------------------GKLDSARKVFDEIRERDLVSWNSMIS 193
                                             G + SA+ +FDE+  R +VSWN MIS
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMIS 243

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY++ G+  EA+ LF  M+     P+ +TLVSVL +   +G L LGKW+  +  KNK+++
Sbjct: 244 GYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEI 303

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  +GSAL+DMY KCG++  A +VF+ +  ++ +TW+A+I A+A +G + +AI+ F+ M 
Sbjct: 304 DDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMG 363

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CGSI 361
            AGV P+ +  IG+LSAC+  G ++ G+      V     Q  + H     D+    G +
Sbjct: 364 KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHL 423

Query: 362 DDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
           ++A ++  +MP+  ++V W A++ A     + H+ L + ER+++      P+D
Sbjct: 424 EEAEELIRNMPIEPDDVIWKALLGAC----KMHKNLKMGERVAETLMELAPHD 472


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 261/467 (55%), Gaps = 27/467 (5%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK----------- 169
           + P    SCA L     G S+H+   + G   D   +++L+ +Y +              
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 170 ---LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
              L+S RKVFDE+ E+D+VSWN+++ G ++ G   EA+ L   M  +   PD  TL SV
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L    +  D+  G  + GF  +N    + ++GS+LIDMY  C     + +VFD +  +D 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           + WN+M+   AQNG  +EA+ LF RM ++G+ P  +T   ++ AC ++ +L LGK +  Y
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299

Query: 347 ASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
             + G   ++F           CG++  A ++F+ +   + VSW AMI   A +G A EA
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           L+LF+RM  E G  +PN +TF+ VL+AC HAGLVD+G + F+ MS  +G++P  EH++ +
Sbjct: 360 LVLFDRM--ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAAL 417

Query: 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515
            D   R G L EA++F+  M  K    V   LL AC+  KNT +++ V + + ++E  + 
Sbjct: 418 ADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSM 477

Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
           G+++I S  +++   W+++A +R  MR+KG+ K P CSWI + + + 
Sbjct: 478 GSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQH 524



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 18/345 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++   +  ++N ++ G   +  ++  +L L  +M R G KPD+FT   V    A   
Sbjct: 129 VFDEMPEKDVVSWNTLVLGCAES-GRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGA 187

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G+ +H    + G  +D  V  SLI MYA C + D + KVFD +  RD + WNSM++
Sbjct: 188 DVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLA 247

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G ++ G   EA+ LF RM      P  +T  S++ +CG+L  L+LGK +  +V++   D 
Sbjct: 248 GCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDG 307

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ S+LIDMY KCG +  ARR+FD + + D+V+W AMI  +A +G + EA++LF+RM+
Sbjct: 308 NVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRME 367

Query: 314 YAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRHDIFC-------GSI 361
              + P+ IT + VL+AC+  G +D G        D Y     L H           G +
Sbjct: 368 LGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKL 427

Query: 362 DDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKE 405
           ++A      M +    S W+ ++ A     + H+  +L E ++K+
Sbjct: 428 EEAYNFISGMKIKPTASVWSTLLRAC----KVHKNTVLAEEVAKK 468


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 281/514 (54%), Gaps = 31/514 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           A+ +F  +   +  A+N M+ G       +   +H L +  QM RL  +P+  T   +  
Sbjct: 179 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRL--RPNASTLVALLP 236

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDH----------VSHSLITMYARCGKLDSARKVF 177
             A   AL  G SVH+   +  L  + +          +  +L+ MYA+CG L  AR+VF
Sbjct: 237 LLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 296

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE--FLPDEITLVSVLGSCGDLGD 235
           D +  R+ V+W+++I G+       +A  LF  M  +   FL    ++ S L +C  L  
Sbjct: 297 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL-SPTSIASALRACASLDH 355

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L +G+ +   + K+ +  +   G++L+ MY K G +  A  +FD M  KD V+++A+++ 
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH- 354
           Y QNG + EA ++F +M+   V PD  T++ ++ AC+ + AL  G+        RGL   
Sbjct: 416 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 475

Query: 355 --------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                   D++  CG ID + +VF  MP  + VSWN MI+    +G   EA  LF  M+ 
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G    P+ VTFI +LSAC H+GLV EG+  F +M   +GL P+ EHY CMVDL +R G 
Sbjct: 536 LGFP--PDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGF 593

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L EA++F++ MP + D  V  ALLGAC+  KN D+ ++V +++ E+    +GN+V+ S I
Sbjct: 594 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 653

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++    +D++A++R + + +G  K+PGCSWI I+
Sbjct: 654 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 222/435 (51%), Gaps = 32/435 (7%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAW-QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  LF QI  P+   +N +IR  +++     +  L LY +M R  + P+N+T+PF   +C
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           + L   + G ++H      GL  D  VS +L+ MY +C  L  A  +F  +  RDLV+WN
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 190 SMISGYSKMGYAKEAVE--LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +M++GY+  G    AV   L  +M+     P+  TLV++L      G L  G  V  + +
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 248 ----------KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297
                     K+K+     +G+AL+DMY KCG+L+ ARRVFDAM  ++ VTW+A+I  + 
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 298 QNGLSNEAIMLFNRMKYAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
                 +A +LF  M   G   ++P  I     L ACAS+  L +G+ +    ++ G+  
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 355 DIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D+  G+           ID A+ +F++M V + VS++A++S    NGRA EA L+F++M 
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM- 432

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            +     P+  T + ++ AC H   +  GR     +    GL  ++   + ++D+YA+ G
Sbjct: 433 -QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCG 490

Query: 464 HLSEAWDFVERMPEK 478
            +  +      MP +
Sbjct: 491 RIDLSRQVFNMMPSR 505



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 171/333 (51%), Gaps = 21/333 (6%)

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS- 128
           YA  +F  +   NE  ++ +I G      + + +  L+  M   GL    F  P    S 
Sbjct: 291 YARRVFDAMPARNEVTWSALIGGFVLC-SRMTQAFLLFKAMLAQGL---CFLSPTSIASA 346

Query: 129 ---CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
              CA+L  L  G  +H+ + K G+  D    +SL++MYA+ G +D A  +FDE+  +D 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VS+++++SGY + G A+EA  +F +M+     PD  T+VS++ +C  L  L  G+   G 
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 466

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           V+   +     + +ALIDMY KCG +  +R+VF+ M ++D+V+WN MI  Y  +GL  EA
Sbjct: 467 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 526

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLR---HDIFC--- 358
             LF  M   G  PD +T I +LSAC+  G +  GK W        GL        C   
Sbjct: 527 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVD 586

Query: 359 -----GSIDDALKVFEDMPVTNEVS-WNAMISA 385
                G +D+A +  + MP+  +V  W A++ A
Sbjct: 587 LLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 619



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 28/346 (8%)

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMG--YAKEAVELFGRMREEEFLPDEITLVS 225
           G L  A  +FD+I   D+ ++N +I  YS      A + + L+ RM      P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
            L +C  L D   G+ +    +   +  + ++ +AL+DMY KC  L  A  +F  M  +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 286 VVTWNAMITAYAQNGLSNEAI--MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           +V WNAM+  YA +G+ + A+  +L  +M+   + P+  TL+ +L   A  GAL  G  V
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 344 DKYASQRGLRH-------------------DIF--CGSIDDALKVFEDMPVTNEVSWNAM 382
             Y  +  L                     D++  CGS+  A +VF+ MP  NEV+W+A+
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           I       R  +A LLF+ M  + G    +  +    L AC     +  G +L  L++ S
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQ-GLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G+       + ++ +YA+AG + +A    + M  K D +   AL+
Sbjct: 370 -GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALV 413



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 136/305 (44%), Gaps = 31/305 (10%)

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA--IMLFNRMKYAGVNPDKITLIG 326
           G L  A  +FD + + DV T+N +I AY+ +  +  A  + L+ RM    V P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
            L AC+++     G+ + ++A   GL+ D+F           C  + DA  +F  MP  +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR- 434
            V+WNAM++  A +G  H A+     M  +    RPN  T + +L      G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 435 --------LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
                   L    +S   L       + ++D+YA+ G L  A    + MP + +E+   A
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSA 309

Query: 487 LLGA---CQKQKNTDVSQRVM--QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
           L+G    C +     +  + M  Q L  +  ++  + + +     +L+M +   ++ AL+
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGE---QLHALL 366

Query: 542 REKGV 546
            + GV
Sbjct: 367 AKSGV 371


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 258/471 (54%), Gaps = 17/471 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           SL L+ +M R G+ P+ FT+     +C  L AL  G+ +H    KIG +    V +SL+ 
Sbjct: 462 SLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVD 521

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF--LPDE 220
           MY++CG+++ A KVF  I +R L+SWN+MI+G+   GY  +A++ FG M+E      PDE
Sbjct: 522 MYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDE 581

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYMGSALIDMYGKCGALVPARRVF 278
            TL S+L +C   G +  GK + GF+V++      +  +  +L+D+Y KCG L  AR+ F
Sbjct: 582 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAF 641

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  K +++W+++I  YAQ G   EA+ LF R++      D   L  ++   A    L 
Sbjct: 642 DQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLR 701

Query: 339 LGKWVDKYASQ--RGLRHDIF---------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            GK +   A +   GL   +          CG +D+A K F +M + + +SW  +I+   
Sbjct: 702 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 761

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   +++ +F  M +      P++V ++ VLSAC H+G++ EG  LF  +  + G+ P
Sbjct: 762 KHGLGKKSVRIFYEMLRHN--IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKP 819

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+C+VDL  RAG L EA   ++ MP K +  +   LL  C+   + ++ + V ++L
Sbjct: 820 RVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKIL 879

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L I++ N  NYV+ S ++     W++    R L   KG+ K  G SW+ I+
Sbjct: 880 LRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 930



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 197/404 (48%), Gaps = 33/404 (8%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK--PDNFTYPFVF 126
           N A  +F +I   +  ++N MI G   A    S +L  +  M+   +K  PD FT   + 
Sbjct: 530 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYG-SKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 127 ISCANLLALNHGVSVHSSVFKIGLD--EDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
            +C++   +  G  +H  + + G        ++ SL+ +Y +CG L SARK FD+I+E+ 
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           ++SW+S+I GY++ G   EA+ LF R++E     D   L S++G   D   L  GK ++ 
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
             VK    L   + ++++DMY KCG +  A + F  M  KDV++W  +IT Y ++GL  +
Sbjct: 709 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 768

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364
           ++ +F  M    + PD++  + VLSAC+  G +  G+             ++F       
Sbjct: 769 SVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE-------------ELFS------ 809

Query: 365 LKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
            K+ E   +   V  +  ++  L   GR  EA  L + M       +PN   +  +LS C
Sbjct: 810 -KLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM-----PIKPNVGIWQTLLSLC 863

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              G ++ G+ +  ++       P +  Y  M +LY +AG+ +E
Sbjct: 864 RVHGDIELGKEVGKILLRIDAKNPAN--YVMMSNLYGQAGYWNE 905



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 170/331 (51%), Gaps = 24/331 (7%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
            S+ LI MY +C +   A KVFD + ER++VSW++++SG+   G  K ++ LF  M  + 
Sbjct: 414 TSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQG 473

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P+E T  + L +CG L  L  G  + GF +K   ++   +G++L+DMY KCG +  A 
Sbjct: 474 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 533

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACAS 333
           +VF  +V++ +++WNAMI  +   G  ++A+  F  M+ A +   PD+ TL  +L AC+S
Sbjct: 534 KVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSS 593

Query: 334 IGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFEDMPVTNEVSWN 380
            G +  GK +  +  + G              D++  CG +  A K F+ +     +SW+
Sbjct: 594 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWS 653

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           ++I   A  G   EA+ LF+R+ +    ++ +      ++       L+ +G+++  L  
Sbjct: 654 SLILGYAQEGEFVEAMGLFKRLQELN--SQIDSFALSSIIGVFADFALLRQGKQMQALAV 711

Query: 441 SSFGLIPKSEHYSCM---VDLYARAGHLSEA 468
                +P     S +   VD+Y + G + EA
Sbjct: 712 K----LPSGLETSVLNSVVDMYLKCGLVDEA 738



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 152/305 (49%), Gaps = 22/305 (7%)

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           LN    + LIDMY KC   + A +VFD+M  ++VV+W+A+++ +  NG    ++ LF+ M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSI 361
              G+ P++ T    L AC  + AL+ G  +  +  + G            D++  CG I
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 529

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           ++A KVF  +   + +SWNAMI+     G   +AL  F  M +     RP++ T   +L 
Sbjct: 530 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 589

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPEKVD 480
           AC   G++  G+++   +  S    P S   +  +VDLY + G+L  A    +++ EK  
Sbjct: 590 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM 649

Query: 481 EIVLGALLGACQKQKNTD---VSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSA 535
                 +LG  Q+ +  +   + +R+ +L  +I+S     + +SS I  FA+  +     
Sbjct: 650 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDS-----FALSSIIGVFADFALLRQGK 704

Query: 536 KMRAL 540
           +M+AL
Sbjct: 705 QMQAL 709


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 187/587 (31%), Positives = 307/587 (52%), Gaps = 62/587 (10%)

Query: 5   AKAYSRHLAFTELNDPSLLR---EKLLSLLKKCP-STKTVQQI---HTQMLINFIQKPNF 57
           AKA + H++ +       L     KLLSLL++C  STK++++I   H ++L   +++   
Sbjct: 8   AKAATDHISISHDKKKCELEMESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVV 67

Query: 58  LLIRIIDL----KDFNYASLLFHQIS-RPNEYAFNVMIRG-----LTTAWQ--KYSHSLK 105
           L   +I++    KD   A  +F     R + Y +N ++       ++  +Q  +   +L+
Sbjct: 68  LCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWNTVISCFYQSGEAEKALE 127

Query: 106 LYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165
           L+ +M+  G +P++ +      +C+ LL L  G  +H    K G + D++V+ +L+ MY 
Sbjct: 128 LFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYG 187

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           +C  L+ AR+VF ++  + LV+WNSMI GY   G +K  VE+  RM  E   P + TL S
Sbjct: 188 KCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTS 247

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           +L +C    +L+ GK++   +                           A  VF +   KD
Sbjct: 248 ILMACSRSRNLLHGKFIHANL---------------------------AETVF-SKTQKD 279

Query: 286 VV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           V  +WN MI++Y   G   +A+ ++++M   GV PD +T   VL AC+ + AL+ GK + 
Sbjct: 280 VAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIH 339

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
              S+  L  D             CG+  +A ++F  +P  + VSW  MISA   +G+  
Sbjct: 340 LSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPR 399

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           EAL  F+ M K G   +P+ VT + VLSAC HAGL+DEG + F  M S +G+ P  EHYS
Sbjct: 400 EALYQFDEMQKFG--LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYS 457

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLEIES 512
           CM+D+  RAG L EA++ +++ PE  D   +L  L  AC       +  R+ +LL+E   
Sbjct: 458 CMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYP 517

Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++  Y++   ++A+ + WD + ++R  M+E G+ K PGCSWI + D
Sbjct: 518 DDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSD 564


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 172/500 (34%), Positives = 268/500 (53%), Gaps = 15/500 (3%)

Query: 70   YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            +A  +F+ +   +  ++N MI     +  +   S+ L+  +   GLKPD+FT   V  +C
Sbjct: 957  FAREVFNDMKHLDLISWNSMISSCAQSSLE-EESVNLFIDLLHEGLKPDHFTLASVLRAC 1015

Query: 130  ANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            ++L+  LN    +H    K G   D  V+ +LI +Y++ GK++ A  +F    + DL  W
Sbjct: 1016 SSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACW 1075

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            N+M+ GY      K+A+ELF  + +     D+ITL +   +CG L  L  GK +    +K
Sbjct: 1076 NAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK 1135

Query: 249  NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
               D + ++ S ++DMY KCG +V A  VF+ +   D V W +MI+    NG  ++A+ +
Sbjct: 1136 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRI 1195

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
            ++RM+ + V PD+ T   ++ A + + AL+ G+ +     +     D F           
Sbjct: 1196 YHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAK 1255

Query: 358  CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            CG+I+DA ++F+ M V N   WNAM+  LA +G A EA+ LF+ M   G    P+ V+FI
Sbjct: 1256 CGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG--IEPDRVSFI 1313

Query: 418  GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
            G+LSAC HAGL  E       M + +G+ P+ EHYSC+VD   RAG + EA   +E MP 
Sbjct: 1314 GILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPF 1373

Query: 478  KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
            K    +  ALLGAC+ Q + +  +RV   L  +E  +S  YV+ S I+A    WDD    
Sbjct: 1374 KASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDA 1433

Query: 538  RALMREKGVSKTPGCSWIGI 557
            R +M+ K V K PG SWI +
Sbjct: 1434 RKMMKRKNVKKDPGFSWIDV 1453



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 213/466 (45%), Gaps = 47/466 (10%)

Query: 27   LLSLLKKCPST----KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
            L S+L+ C S        +QIH   L       +F+   +ID+         A  LF   
Sbjct: 1008 LASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNK 1067

Query: 79   SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
               +   +N M+ G          +L+L+  + + G K D  T      +C  L+ L+ G
Sbjct: 1068 DDLDLACWNAMMFGYIIG-NDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG 1126

Query: 139  VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
              +H+   K G D D HV+  ++ MY +CG + +A  VF+ I   D V+W SMISG    
Sbjct: 1127 KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDN 1186

Query: 199  GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
            G   +A+ ++ RMR+   +PDE T  +++ +   +  L  G+ +   V+K     + ++G
Sbjct: 1187 GNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG 1246

Query: 259  SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            ++L+DMY KCG +  A R+F  M  +++  WNAM+   AQ+G + EA+ LF  MK  G+ 
Sbjct: 1247 TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 1306

Query: 319  PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP----VT 374
            PD+++ IG+LSAC+                          G   +A +    MP    + 
Sbjct: 1307 PDRVSFIGILSACS------------------------HAGLTSEAYEYLHSMPNDYGIE 1342

Query: 375  NEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
             E+  ++ ++ AL   G   EA  + E M  +  A+         +L AC   G V+ G+
Sbjct: 1343 PEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINR-----ALLGACRIQGDVETGK 1397

Query: 434  RLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            R+   +   F L P  S  Y  + ++YA A    +  D  + M  K
Sbjct: 1398 RVAARL---FALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 1440



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 186/379 (49%), Gaps = 40/379 (10%)

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
           IS  NLL    G   H+ +   G   D  +S++L+TMY++CG L SAR+VFD   ERDLV
Sbjct: 632 ISTHNLLL---GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLV 688

Query: 187 SWNSMISGY-----SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           +WN+++  Y     S  G A+E + LF  +R        +TL  VL  C + G L   + 
Sbjct: 689 TWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEG 748

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           V G+ +K  ++ + ++  AL+++Y KCG +  AR +FD M  +DVV WN M+  Y Q GL
Sbjct: 749 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 808

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQRGLRH--- 354
             EA  LF+    +G+ PD+ ++  +L+  + +   D GKW    V  YA++  L     
Sbjct: 809 EKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVN-WDEGKWLADQVQAYAAKLSLSDDNP 867

Query: 355 DIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
           D+FC                    WN  +S   + G    A+  F  M+  G     + V
Sbjct: 868 DVFC--------------------WNKKLSECLWAGDNWGAIECFVNMN--GLNIDYDAV 905

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T + VL+A      ++ G+++  +   S GL       + +V++Y++ G    A +    
Sbjct: 906 TLLVVLAAVAGTDDLELGKQVHGIAVKS-GLDSDVSVANSLVNMYSKMGCAYFAREVFND 964

Query: 475 MPEKVDEIVLGALLGACQK 493
           M + +D I   +++ +C +
Sbjct: 965 M-KHLDLISWNSMISSCAQ 982



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 200/445 (44%), Gaps = 42/445 (9%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A LLF  +   +   +N+M++G      +   + +L+ +  R GL+PD F+   +     
Sbjct: 781  ARLLFDWMRERDVVLWNMMLKGYVQLGLE-KEAFQLFSEFHRSGLRPDEFSVQLIL---- 835

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
                  +GVS      ++  DE   ++  +    A+    D    VF          WN 
Sbjct: 836  ------NGVS------EVNWDEGKWLADQVQAYAAKLSLSDDNPDVF---------CWNK 874

Query: 191  MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
             +S     G    A+E F  M       D +TL+ VL +     DL LGK V G  VK+ 
Sbjct: 875  KLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSG 934

Query: 251  MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            +D +  + ++L++MY K G    AR VF+ M + D+++WN+MI++ AQ+ L  E++ LF 
Sbjct: 935  LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFI 994

Query: 311  RMKYAGVNPDKITLIGVLSACAS-IGALDLGKWVDKYASQRGLRHDIFC----------- 358
             + + G+ PD  TL  VL AC+S I  L++ + +  +A + G   D F            
Sbjct: 995  DLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKS 1054

Query: 359  GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
            G +++A  +F++    +   WNAM+          +AL LF  + K G   + + +T   
Sbjct: 1055 GKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSG--EKSDQITLAT 1112

Query: 419  VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
               AC    L+D+G+++    +   G        S ++D+Y + G +  A   V      
Sbjct: 1113 AAKACGCLVLLDQGKQIH-AHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISA 1170

Query: 479  VDEIVLGALLGACQKQKNTDVSQRV 503
             D++   +++  C    N D + R+
Sbjct: 1171 PDDVAWTSMISGCVDNGNEDQALRI 1195


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 171/556 (30%), Positives = 292/556 (52%), Gaps = 23/556 (4%)

Query: 21  SLLREKLLSLLKKCPSTKT-VQQIH-----TQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
           +LL  K +  L+     K  + QIH     T  L+N       L+     + + +YA  +
Sbjct: 13  TLLCPKRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKV 72

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F ++ +     +N MI  + +  +     L+LY QM    ++PD+ T+     +C + L 
Sbjct: 73  FDELPQRGVSVYNSMIV-VYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLV 131

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G +V       G   D  V  S++ +Y +CGK+D A  +F ++ +RD++ W +M++G
Sbjct: 132 LEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTG 191

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +++ G + +AVE +  M+ E F  D + ++ +L + GDLGD  +G+ V G++ +  + +N
Sbjct: 192 FAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMN 251

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             + ++L+DMY K G +  A RVF  M+ K  V+W ++I+ +AQNGL+N+A      M+ 
Sbjct: 252 VVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQS 311

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDA 364
            G  PD +TL+GVL AC+ +G+L  G+ V  Y  +R +   +           CG++  +
Sbjct: 312 LGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTATALMDMYSKCGALSSS 371

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
            ++FE +   + V WN MIS    +G   E + LF +M++      P+  TF  +LSA  
Sbjct: 372 REIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESN--IEPDHATFASLLSALS 429

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-- 482
           H+GLV++G+  F +M + + + P  +HY C++DL ARAG + EA D +    EK+D    
Sbjct: 430 HSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMIN--SEKLDNALP 487

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           +  ALL  C   +N  V       +L++   + G   + S  FA    W + AK+R LMR
Sbjct: 488 IWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMR 547

Query: 543 EKGVSKTPGCSWIGID 558
              + K PG S I ++
Sbjct: 548 NGAMEKVPGYSAIEVN 563


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 249/433 (57%), Gaps = 13/433 (3%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G + H  V ++GL+ D   S+ L+ MY++CG +  A KVFDEI ER +VSWN MI    +
Sbjct: 17  GKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQ 76

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  ++A+++F  M+ E     E T+ SV+ +C   GD+   + +  F +K  +D + ++
Sbjct: 77  NGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFV 136

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
           G+ALID+Y KCG++  A  VF+ M  ++ VTW++++  + QN L  E ++LF R K  G+
Sbjct: 137 GTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGL 196

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
             ++  +  V+ ACA + AL  G+ V     + G   + F           CGSI++A  
Sbjct: 197 ENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYV 256

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F ++   N V WNA+IS  A +  + E + LFE M + G   +P++VT++ VLSACVH 
Sbjct: 257 LFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTG--MQPDEVTYVAVLSACVHV 314

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLVD+GR  FDLM+    + P   HYSCMVD+  R G + EA + + +MP      + G+
Sbjct: 315 GLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGS 374

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL +C+   N ++++   + L E+E    GNYV+ +  +A  K W+++AK R  ++   +
Sbjct: 375 LLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEI 434

Query: 547 SKTPGCSWIGIDD 559
            K  G SWI I D
Sbjct: 435 LKERGKSWIEIKD 447



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 151/302 (50%), Gaps = 18/302 (5%)

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L S+L  C    + + GK   G V++  ++ +    + L++MY KCG +  A +VFD + 
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIP 60

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            + +V+WN MI    QNG   +AI +F  M+  G    + T+  V+ ACA+ G +   + 
Sbjct: 61  ERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQ 120

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  +A +  +  D+F           CGSI+DA  VFE MP  N+V+W+++++    N  
Sbjct: 121 LHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNEL 180

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             E L+LF R  KE G    N      V+ AC     + EGR++  ++  + G  P +  
Sbjct: 181 YEEGLVLFAR-GKEMG-LENNQFMISSVIRACAGLAALIEGRQVHAIVCRT-GFGPNNFV 237

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
            S +VD+YA+ G + EA+     + EK + ++  A++    K      S  VM L  E++
Sbjct: 238 ASALVDMYAKCGSIEEAYVLFCNI-EKKNVVLWNAIISGFAKHA---CSSEVMNLFEEMQ 293

Query: 512 SS 513
            +
Sbjct: 294 QT 295



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 127/246 (51%), Gaps = 6/246 (2%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H   +   +    F+   +ID+         AS +F  +   N+  ++ ++ G    
Sbjct: 119 RQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQN 178

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
            + Y   L L+ + K +GL+ + F    V  +CA L AL  G  VH+ V + G   ++ V
Sbjct: 179 -ELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFV 237

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           + +L+ MYA+CG ++ A  +F  I ++++V WN++ISG++K   + E + LF  M++   
Sbjct: 238 ASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGM 297

Query: 217 LPDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
            PDE+T V+VL +C  +G +  G+ + +    ++ +  N    S ++D+ G+ G +  A 
Sbjct: 298 QPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAH 357

Query: 276 RVFDAM 281
            +   M
Sbjct: 358 ELMTKM 363


>gi|147834109|emb|CAN62187.1| hypothetical protein VITISV_003709 [Vitis vinifera]
          Length = 560

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 180/546 (32%), Positives = 282/546 (51%), Gaps = 18/546 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           L  L K   S    +++H  ++ N +    F   RI+       D   A  LF   S  +
Sbjct: 15  LFELSKIHQSLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSHRS 74

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            Y +N +IR      Q +  +L L+ +M R  +KPD+FT+  V  +CA     +    VH
Sbjct: 75  VYLWNSVIRAYAGEHQ-FDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRVVH 133

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V   GL  D     +L+T Y++   +D A +VF  + E+DLV WN+M +GY   G+  
Sbjct: 134 GGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEQDLVLWNAMAAGYGYCGFWD 193

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           + ++LF  MR     PD  T+V ++    D   L +GK + GF +K+  D N ++GSAL+
Sbjct: 194 KGLQLFSAMRSMGEQPDSYTMVGLISGLADPNLLGIGKGIHGFCLKSSFDCNAHVGSALV 253

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY +C  L  A  VF  +   D+VTW+A+IT  +++G   +A++ F +M   G   D I
Sbjct: 254 SMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVDPI 313

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
            +  VL+A      L  G  +  Y  + GL  ++            CG ++  ++VF+ M
Sbjct: 314 LIXSVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFDSM 373

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  N VS+N+MI  L  +G A +A  +FE + ++G   +P++ TF  +L  C HAGLV++
Sbjct: 374 PNRNTVSYNSMILGLGIHGLAXQAFKMFEEVLEKG--FKPDESTFSALLCTCCHAGLVND 431

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           GR +F  M+  F +  ++EHY  MV L   AG L EA+D +  + +  D  + GALL  C
Sbjct: 432 GREIFSRMTEEFHIQARTEHYVHMVKLLGMAGELQEAYDLILSLQQPADSGIWGALLSCC 491

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
               N++++  V Q L E +   S   V+ S I+A    WDD  K+R  ++E G+ K PG
Sbjct: 492 NFHGNSELAXIVAQQLFENKPEKSAYRVMLSNIYAGDXRWDDVKKLRDDIQEAGIKKMPG 551

Query: 552 CSWIGI 557
            SWIG+
Sbjct: 552 LSWIGV 557


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/532 (33%), Positives = 280/532 (52%), Gaps = 25/532 (4%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINF----IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEY 84
           +LL+ C      ++IH  ++ N     +   N L+           A  +F  + R +  
Sbjct: 75  NLLRDCGELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSI 134

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL--LALNHGVSVH 142
           +++ MI G          ++KLY   K + + PD FT+  V  +C++L   AL  G  +H
Sbjct: 135 SWSKMIAGYVRHGLA-REAIKLY---KAMAIDPDGFTFSAVLNACSSLGPRALEVGKEIH 190

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           + + +I L  D  V  +L+TM+A+CG L  +R+VFD+ R +D++ WNSMI  YS+ G+ +
Sbjct: 191 AHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPR 250

Query: 203 EAVELFGRM--REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           EA+ELF  M        P+ IT  +VL +C  + DL  GK V   +V      +    ++
Sbjct: 251 EAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENS 310

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L++MY KCG++  AR VFD M  + VV+W  +I+AY + G   EA+ L+ +M   GV P+
Sbjct: 311 LVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPN 370

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
            IT   VLSAC+S+GAL+ GK V       G + D+            CGS+D A KVF+
Sbjct: 371 GITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFD 430

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            M + N VSW AMISA A +  + EA+ L++ M  EG   + +   +  VL+AC  AGL+
Sbjct: 431 RMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEG--VQASSFIYGTVLTACSQAGLL 488

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           +  R  F  ++   G   K E Y CM  +  RAG L+EA + +  MP + + +    LL 
Sbjct: 489 ESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLA 548

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
           AC+   + +   RV ++L  +E  N   YV+ S I+      +++A++R  M
Sbjct: 549 ACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKM 600



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 197/404 (48%), Gaps = 39/404 (9%)

Query: 93  LTTAWQKYSHSLKLYYQMKRLG-----LKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147
           +  A+ +  H  +     K +G     ++P+  TY  V  +C+ +  L  G  VH  +  
Sbjct: 239 MIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVD 298

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
            G   D    +SL+ MYA+CG +  AR+VFD +++R +VSW  +IS Y + G+ +EA++L
Sbjct: 299 AGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDL 358

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           + +M  E   P+ IT  SVL +C  LG L  GK V   +       +  + +AL+ +YGK
Sbjct: 359 YRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGK 418

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
           CG++  AR+VFD M  ++VV+W AMI+AYA +  S EAI L+  M   GV         V
Sbjct: 419 CGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTV 478

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIFCGSID-DALKVFEDMPVTNEVSWNAMISAL 386
           L+AC+  G L+              RH   C + D  A    ED        +  M + L
Sbjct: 479 LTACSQAGLLE------------SARHYFGCLTRDCGAPAKLED--------YVCMATVL 518

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
              GR  EA  L   M  E        V ++G+L+AC     V+ G R+ +++   F L 
Sbjct: 519 GRAGRLAEAEELLAVMPFEA-----EFVAWMGLLAACKAHNDVERGARVAEVL---FRLE 570

Query: 447 PKSEH-YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           P +E  Y  + ++Y  AG   EA     R+  K+ +++  A  G
Sbjct: 571 PLNEAPYVLLSNIYVAAGRQEEA----ARVRRKMGDVIAAAGSG 610


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/468 (33%), Positives = 256/468 (54%), Gaps = 13/468 (2%)

Query: 103  SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
            +L+ + +M   G KP  F       SCA LL    GV +H+ + + G +++  ++ +L+ 
Sbjct: 1300 ALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVD 1359

Query: 163  MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
            +YA+C  +  A++VFD + + D VSW S+ISG+SK G  KEA+  F  M   +  P+ +T
Sbjct: 1360 LYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVT 1419

Query: 223  LVSVLGSCGDLGDLV-LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
             VS + +C  L  +      +   VVK    +  ++ S LID Y KCG +  A  +F   
Sbjct: 1420 YVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTT 1479

Query: 282  VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
            + +D + +N+MI+ Y+QN    EA+ LF  M+  G+ P   TL  +L+AC S+  L  G+
Sbjct: 1480 IERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQGR 1539

Query: 342  WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
             V    ++ G   ++F           CGSID+A  VF      N V W +MI+  A +G
Sbjct: 1540 QVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQSG 1599

Query: 391  RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
            R  E L LFER+  E G   P+ + F  VL+AC HAG +D+G   F+ M   +GL+P  +
Sbjct: 1600 RGPEGLGLFERLVXEEGFT-PDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLD 1658

Query: 451  HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
             Y+C+VDLY R GHL +A + +E  P + + ++ G+ L +C+     ++ +     L ++
Sbjct: 1659 QYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREAADKLFKM 1718

Query: 511  ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            E  ++  YV  + I+A   +W +  ++R LM++KG+ K+ G SW+ +D
Sbjct: 1719 EPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEVD 1766



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 209/447 (46%), Gaps = 41/447 (9%)

Query: 42   QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
            QIH +++    +   FL   ++DL         A  +F  + + ++ ++  +I G +   
Sbjct: 1337 QIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKN- 1395

Query: 98   QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL-NHGVSVHSSVFKIGLDEDDHV 156
             +   ++  + +M    +KP+  TY     +C  L  + +    +H+ V K+G      V
Sbjct: 1396 GRGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFV 1455

Query: 157  SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
               LI  Y++CG++D A  +F    ERD + +NSMISGYS+    +EA++LF  MR    
Sbjct: 1456 VSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGL 1515

Query: 217  LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             P + TL S+L +CG L  L  G+ V   V K   + N ++ SAL+DMY KCG++  AR 
Sbjct: 1516 XPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARC 1575

Query: 277  VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIG 335
            VF   V K+ V W +MIT YAQ+G   E + LF R+    G  PD I    VL+AC   G
Sbjct: 1576 VFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAG 1635

Query: 336  ALDLGKWVDKYASQR---GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
             LD G  +D +   R   GL  D+      D      D+ V               NG  
Sbjct: 1636 FLDKG--IDYFNQMRRDYGLVPDL------DQYACLVDLYVR--------------NGHL 1673

Query: 393  HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH- 451
             +A  L E    E     PN V +   LS+C   G  + GR   D +   F + P S   
Sbjct: 1674 RKAKELMEAXPXE-----PNSVMWGSFLSSCKLYGEAELGREAADKL---FKMEPCSTAP 1725

Query: 452  YSCMVDLYARAGHLSEAWDFVERMPEK 478
            Y  M  +YA+AG  SE  +  + M +K
Sbjct: 1726 YVAMASIYAQAGLWSEVVEIRKLMKQK 1752



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 196  SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
            +K    +EA+E F RM      P +  L + L SC  L +  LG  +   +++   + N 
Sbjct: 1292 AKHANVREALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 1351

Query: 256  YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            ++ SAL+D+Y KC A+V A+RVFD M   D V+W ++I+ +++NG   EAI+ F  M  +
Sbjct: 1352 FLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGS 1411

Query: 316  GVNPDKITLIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIF-----------CGSIDD 363
             + P+ +T +  +SAC  +  + D    +  +  + G     F           CG ID 
Sbjct: 1412 QIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQ 1471

Query: 364  ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
            A+ +F      + + +N+MIS  + N    EAL LF  M   G    P D T   +L+AC
Sbjct: 1472 AVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNG--LXPTDHTLTSILNAC 1529

Query: 424  VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
                ++ +GR++  L+ +  G        S ++D+Y++ G + EA
Sbjct: 1530 GSLTILQQGRQVHSLV-AKMGSESNVFVVSALLDMYSKCGSIDEA 1573


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/458 (34%), Positives = 254/458 (55%), Gaps = 19/458 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           P   TY  + + C +  +L+  + VH  +   G D+D  ++  LI MY+  G +D ARKV
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC----GD 232
           FD+ R+R +  WN++    +  G+ +E + L+ +M       D  T   VL +C      
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           +  L+ GK +   + +     + Y+ + L+DMY + G +  A  VF  M  ++VV+W+AM
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAM 254

Query: 293 ITAYAQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           I  YA+NG + EA+  F  M  +    +P+ +T++ VL ACAS+ AL+ GK +  Y  +R
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR 314

Query: 351 GLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           GL   +            CG ++   +VF+ M   + VSWN++IS+   +G   +A+ +F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIF 374

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           E M   G  A P  VTF+ VL AC H GLV+EG+RLF+ M    G+ P+ EHY+CMVDL 
Sbjct: 375 EEMLANG--ASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLL 432

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
            RA  L EA   V+ M  +    V G+LLG+C+   N ++++R  + L  +E  N+GNYV
Sbjct: 433 GRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYV 492

Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           + + I+A  +MWD+  +++ L+  +G+ K PG  W+ +
Sbjct: 493 LLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEV 530



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 143/469 (30%), Positives = 234/469 (49%), Gaps = 59/469 (12%)

Query: 42  QIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
           ++H  +L N   +  FL  ++I    DL   +YA  +F +  +   Y +N + R LT A 
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC-ANLLALNH---GVSVHSSVFKIGLDED 153
                 L LY++M R+G++ D FTY +V  +C A+   +NH   G  +H+ + + G    
Sbjct: 158 HG-EEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
            ++  +L+ MYAR G +D A  VF  +  R++VSW++MI+ Y+K G A EA+  F  M  
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276

Query: 214 E--EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
           E  +  P+ +T+VSVL +C  L  L  GK + G++++  +D    + SAL+ MYG+CG L
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336

Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
              +RVFD M ++DVV+WN++I++Y  +G   +AI +F  M   G +P  +T + VL AC
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-----WNAMISAL 386
           +  G ++ GK                        ++FE M   + +      +  M+  L
Sbjct: 397 SHEGLVEEGK------------------------RLFETMWRDHGIKPQIEHYACMVDLL 432

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD----EGRRLFDLMSSS 442
               R  EA  + + M  E     P    +  +L +C   G V+      RRLF L   +
Sbjct: 433 GRANRLDEAAKMVQDMRTE-----PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKN 487

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            G      +Y  + D+YA A    + WD V+R+ + ++   L  L G C
Sbjct: 488 AG------NYVLLADIYAEA----QMWDEVKRVKKLLEHRGLQKLPGRC 526



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 20/308 (6%)

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +S N +I    K G  K+A+    R+  +E  P + T   ++  CG    L     V   
Sbjct: 47  ISNNQLIQSLCKEGKLKQAI----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++ N  D + ++ + LI MY   G++  AR+VFD    + +  WNA+  A    G   E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSAC----ASIGALDLGKWVDKYASQRGLRHDIFC--- 358
           + L+ +M   GV  D+ T   VL AC     ++  L  GK +  + ++RG    ++    
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 359 --------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                   G +D A  VF  MPV N VSW+AMI+  A NG+A EAL  F  M +E   + 
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VT + VL AC     +++G+ +   +    GL       S +V +Y R G L     
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCGKLEVGQR 341

Query: 471 FVERMPEK 478
             +RM ++
Sbjct: 342 VFDRMHDR 349


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 260/455 (57%), Gaps = 30/455 (6%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM-----YARCGKLDSARKVFDEIR-E 182
           C  L AL     +H++  K GL         L+T+      A+  +L  AR+VFD I   
Sbjct: 41  CTTLRAL---AQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGP 97

Query: 183 RDLVSWNSMISGYSKMGYA-------KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
            D+V +N+++ GY++   A       +EA  +F RM EE   PD  T VS+L +C     
Sbjct: 98  GDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARA 157

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
              G+   G  VK     + Y+   LI+MY +CG    AR +F  +  + VV++NAMITA
Sbjct: 158 GEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITA 217

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH- 354
             ++    EA++LF  M+  G+    +TLI VLSACA +GAL+LG+W+ +Y  +  L   
Sbjct: 218 AVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSL 277

Query: 355 --------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                   D++  CGS++DA+ VF+ M   +  +W+ MI A A +    EA+ LFE M K
Sbjct: 278 VKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKK 337

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           +G   +P+DVTF+GVL AC H+GLV EG + FD M   FGL+P  +HY C+ DL AR+G 
Sbjct: 338 QG--IKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE-FGLVPGIKHYGCVADLLARSGQ 394

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L  A++F++ +P K   I+   LL AC  + + D+ ++V + +LE++ S+ G+YVI S +
Sbjct: 395 LDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNL 454

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            AN   W++  ++R LM EKGV K PGCS I +D+
Sbjct: 455 CANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDN 489



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 221/445 (49%), Gaps = 31/445 (6%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL---------KDFNYASLL 74
           +  LL  L +C + + + Q+H   + + +Q     + R++ L            +YA  +
Sbjct: 31  QHPLLPYLPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQV 90

Query: 75  FHQISRPNEYA-FNVMIRGLTT------AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F +I  P +   +N ++RG         A      + +++ +M   G+ PD +T+  +  
Sbjct: 91  FDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLK 150

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +CA   A   G   H    K+G  E ++V  +LI MYA CG   +AR +F  +    +VS
Sbjct: 151 ACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVS 210

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           +N+MI+   +     EA+ LF  M+ +      +TL+SVL +C  LG L LG+W+  +V 
Sbjct: 211 YNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVR 270

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K ++D    + +ALIDMYGKCG+L  A  VF  M ++D   W+ MI AYA +    EAI 
Sbjct: 271 KVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAIS 330

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVD---KYASQRGLRH-----DIFC 358
           LF  MK  G+ PD +T +GVL AC+  G +  G ++ D   ++    G++H     D+  
Sbjct: 331 LFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLA 390

Query: 359 --GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             G +D A +  +++P+    + W  ++SA    G A     +FER+ +   +   + V 
Sbjct: 391 RSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVI 450

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMS 440
           F  +   C + G  +E  R+  LM+
Sbjct: 451 FSNL---CANTGRWEEMNRVRKLMN 472


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 262/458 (57%), Gaps = 14/458 (3%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M+R G+  D+ TY  +   C    A+  G  VH  +F  G      +++ LI MY +   
Sbjct: 276 MERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNL 335

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L+ A+ +FD++ ER++VSW +MIS YS       A+ L   M  +  +P+  T  SVL +
Sbjct: 336 LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRA 395

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C  L DL   K +  +++K  ++ + ++ SALID+Y K G L+ A +VF  M+  D V W
Sbjct: 396 CERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVW 452

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----VDK 345
           N++I A+AQ+   +EA+ L+  M+  G   D+ TL  VL AC S+  L+LG+     V K
Sbjct: 453 NSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK 512

Query: 346 YASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +     L + +      CGS++DA  +F  M   + +SW+ MI+ LA NG + EAL LFE
Sbjct: 513 FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE 572

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            M  +G   +PN +T +GVL AC HAGLV+EG   F  M++ +G+ P  EHY CM+DL  
Sbjct: 573 SMKVQG--PKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLG 630

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RA  L +    +  M  + D +    LL AC+ ++N D++    + +L+++  ++G YV+
Sbjct: 631 RAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVL 690

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            S I+A  K W+D A++R  M+++G+ K PGCSWI ++
Sbjct: 691 LSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVN 728



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 134/288 (46%), Gaps = 23/288 (7%)

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+ +   M       D IT   ++  C   G +  GK V   +  N      ++ + LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY K   L  A+ +FD M  ++VV+W  MI+AY+   L++ A+ L   M   GV P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 324 LIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDM 371
              VL AC  +  L  L  W+ K     GL  D+F            G + +ALKVF +M
Sbjct: 389 FSSVLRACERLYDLKQLHSWIMKV----GLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + V WN++I+A A +    EAL L++ M + G  A  +  T   VL AC    L++ 
Sbjct: 445 MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPA--DQSTLTSVLRACTSLSLLEL 502

Query: 432 GRRL-FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           GR+    ++     LI      + ++D+Y + G L +A     RM +K
Sbjct: 503 GRQAHVHVLKFDQDLILN----NALLDMYCKCGSLEDAKFIFNRMAKK 546



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 24  REKLLSLLKKCPSTKTVQ---QIHTQMLINFIQK---PNFLLIRIIDLKDFNYASLLFHQ 77
           +  L S+L+ C S   ++   Q H  +L  F Q     N LL           A  +F++
Sbjct: 484 QSTLTSVLRACTSLSLLELGRQAHVHVL-KFDQDLILNNALLDMYCKCGSLEDAKFIFNR 542

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           +++ +  +++ MI GL  A   +S  +L L+  MK  G KP++ T   V  +C++   +N
Sbjct: 543 MAKKDVISWSTMIAGL--AQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVN 600

Query: 137 HGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-ERDLVSWNSMI 192
            G     S+  + G+D        ++ +  R  KLD   K+  E+  E D+V+W +++
Sbjct: 601 EGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLL 658


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/501 (34%), Positives = 282/501 (56%), Gaps = 18/501 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A +LF ++   +  ++  +I     A      +++L+  M+  GL+PD      +     
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHA-EKAVELFLGMEESGLQPDEVVISCLLAGLG 327

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N   +  G + H+++ +    +   + ++LI+MYA+C ++D A  VF  + +RD  SW+S
Sbjct: 328 NDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387

Query: 191 MISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           M+  Y K G   + +EL+  M+   ++EF  D  +L+S++ SC  LG L LG+    + +
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+    N  + +ALI MYG+CG    AR++F  +  KDVVTW+A+I++Y+  G S +A++
Sbjct: 448 KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           L+++M   GV P+  TL+ V+S+CA++ AL+ G+ +  +    GL  D+           
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYM 567

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A K+F+ M   + V+WN MIS    +G A +AL LF  M  E G  +PN +TF
Sbjct: 568 KCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMM--ERGNVKPNSLTF 625

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC HAGLVD+GR LF  M   + L P  +HY+CMVDL  ++GHL EA D V  MP
Sbjct: 626 LAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  + G LLGAC+   N ++  RV +     +  N G Y++ S  + + + W++  K
Sbjct: 685 IEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEK 744

Query: 537 MRALMREKGVSKTPGCSWIGI 557
           +R +M+  GV K+ G S I I
Sbjct: 745 LRDMMKNHGVEKSIGWSTIDI 765



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 209/422 (49%), Gaps = 20/422 (4%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQ---KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           LF ++   +  A+  +I G     Q     S+ +++       G +P++ T      +C 
Sbjct: 167 LFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACG 226

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  L+ G  +H    K G+     V  SL +MY +C   + AR +F E+ E+DLVSW S
Sbjct: 227 VLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTS 286

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I  Y + G+A++AVELF  M E    PDE+ +  +L   G+   +  GK     +V+  
Sbjct: 287 LIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              +  +G+ALI MY KC  +  A  VF  +  +D  +W++M+ AY + GL  + + L+ 
Sbjct: 347 FGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYR 406

Query: 311 RMKYAGVNP---DKITLIGVLSACASIGALDLGKWVDKYASQR--GLRHDIF-------- 357
            M++   +    D  +LI ++S+C+ +G L LG+    Y+ +   G    +         
Sbjct: 407 EMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYG 466

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG+ D A K+F  +   + V+W+A+IS+ +  G + +ALLL+++M  EG   +PN  T 
Sbjct: 467 RCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEG--VKPNSATL 524

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + V+S+C +   ++ G  L        GL       + +VD+Y + G L  A    + M 
Sbjct: 525 VSVISSCANLAALEHG-ELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSML 583

Query: 477 EK 478
           E+
Sbjct: 584 ER 585



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 19/340 (5%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ + +N ++R    A   ++ +L  + +M+  G +P  FT P V  + A L AL  G +
Sbjct: 70  PDAFLWNSLLRSRHRA-SDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128

Query: 141 VHSSVFKIGLDEDD---HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           VH+   + GL E D    V+ SL+ MYARCG +  A ++FDE+ ERD+V+W ++ISG   
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188

Query: 198 MGYAKEAVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            G   E +    RM          P+  T+ S L +CG LG+L +G  + GF VK  +  
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + S+L  MY KC +   AR +F  +  KD+V+W ++I AY + G + +A+ LF  M+
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD++ +  +L+   +   +  GK       +R     +            C  +D
Sbjct: 309 ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVD 368

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            A  VF  +   +  SW++M+ A    G   + L L+  M
Sbjct: 369 IAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREM 408



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 25/268 (9%)

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D   WNS++    +       +    RMR     P   T   V  +  +LG L +G  V 
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 244 GFVVKNKM---DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            + V+  +   D +  + S+L+ MY +CG++  A R+FD M  +DVV W A+I+    NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 301 LSNEAIMLFNRMKYA----GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-- 354
              E +    RM  +    G  P+  T+   L AC  +G L +G  +  +  + G+ H  
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 355 ----DIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                +F     C S +DA  +F ++P  + VSW ++I A    G A +A+ LF  M + 
Sbjct: 251 SVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEES 310

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGR 433
           G   +P++V       +C+ AGL ++ +
Sbjct: 311 G--LQPDEVVI-----SCLLAGLGNDAK 331



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 27/273 (9%)

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D   WN+++ +  +       +    RM+ +G  P + T   V SA A +GAL +G  V 
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 345 KYASQRGLRHD--------------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            Y+ + GL                   CGS+ DA+++F++MP  + V+W A+IS    NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 391 RAHEALLLFERMSKEG--GAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGLIP 447
           +  E L    RM +    G ARPN  T    L AC   G +  G  L    + +  G  P
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
                S +  +Y +     +A      +PEK D +   +L+GA  +  +   +++ ++L 
Sbjct: 251 SV--VSSLFSMYTKCDSTEDARILFPELPEK-DLVSWTSLIGAYCRAGH---AEKAVELF 304

Query: 508 LEIESSN-SGNYVISSKIFANLKMWDDSAKMRA 539
           L +E S    + V+ S + A L    + AK+R 
Sbjct: 305 LGMEESGLQPDEVVISCLLAGL---GNDAKVRG 334


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/465 (37%), Positives = 261/465 (56%), Gaps = 25/465 (5%)

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG---- 168
           L  KP     P     C +L AL     +H++  K GL     +   L+T+  + G    
Sbjct: 14  LPAKPKGPLLPH-LPHCTSLRAL---AQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPA 69

Query: 169 KLDSARKVFDEI-RERDLVSWNSMISGYSKMG-YAKEAVELFGRMREEEFLPDEITLVSV 226
            L  AR+VFD I    D+V +N+++ GY++    A EA  +  RM EE   PD  T VS+
Sbjct: 70  HLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSL 129

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD- 285
           L +C        G+   G  VK     + Y+   LI+MY +CG    AR +F  + N D 
Sbjct: 130 LKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDC 189

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
           VV++NAMITA  ++    EA++LF  M+  G+ P  +T+  VLSACA +GAL+LG+W+ +
Sbjct: 190 VVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHE 249

Query: 346 YASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
           Y  + GL           D++  CGS++DA+ VF+ M   +  +W+ MI A A +    E
Sbjct: 250 YVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSYGRE 309

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           A+ LFE M K+G   RP+ VTF+GVL AC H+G+V EG + FD M   +G++P  +HY C
Sbjct: 310 AISLFEEMKKQG--IRPDAVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVPGIKHYGC 366

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514
           + DL AR+G L +A+ F++ +P +   I+   LL AC      D+ +RV + +LE++ ++
Sbjct: 367 VTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDLGKRVFERILELDDTH 426

Query: 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
             +YVI S + AN   W++  ++R LM EKGV K PGCS I ID+
Sbjct: 427 GSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDN 471



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 219/443 (49%), Gaps = 25/443 (5%)

Query: 20  PSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL--------KDFNYA 71
           P+  +  LL  L  C S + + Q+H   + + +     L+ R++ L            YA
Sbjct: 15  PAKPKGPLLPHLPHCTSLRALAQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYA 74

Query: 72  SLLFHQISRPNEYA-FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
             +F +I  P +   +N ++RG   +    + + ++  +M   G+ PD +T+  +  +CA
Sbjct: 75  RQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACA 134

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD-LVSWN 189
              A   G   H    K G  + ++V  +LI MYA CG   SAR +F  +   D +VS+N
Sbjct: 135 AARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYN 194

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI+   +     EA+ LF  M+ +   P  +T+ SVL +C  LG L LG+W+  +V K 
Sbjct: 195 AMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKA 254

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +D    + +ALIDMYGKCG+L  A  VF  M ++D   W+ MI AYA +    EAI LF
Sbjct: 255 GLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSYGREAISLF 314

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVD---KYASQRGLRH-----DIFC-- 358
             MK  G+ PD +T +GVL AC+  G +  G ++ D   +Y    G++H     D+    
Sbjct: 315 EEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVPGIKHYGCVTDLLARS 374

Query: 359 GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           G ++ A K  +++P+    + W  ++SA   +G       +FER+ +       + V F 
Sbjct: 375 GQLEKAYKFIDELPIQPTAILWRTLLSACGSHGAVDLGKRVFERILELDDTHGSDYVIFS 434

Query: 418 GVLSACVHAGLVDEGRRLFDLMS 440
            +   C + G  +E  R+  LM+
Sbjct: 435 NL---CANTGKWEEMNRVRKLMN 454


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/547 (30%), Positives = 294/547 (53%), Gaps = 22/547 (4%)

Query: 28  LSLLKKCPSTKTVQQ---IHTQMLINF----IQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           + +L+ C  T+ ++Q   IH+ ++ N     +     L+I  +   +   A  +F ++  
Sbjct: 41  MKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPE 100

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            N  ++   I G       Y  +L ++ QM R G++ + FTY  V  +C  L  L  G+ 
Sbjct: 101 RNVVSWTAQISGYAKNGH-YQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  + K     +  V  +L+ ++++CG ++ AR +F+ + ERD+VSWN++I GY+   +
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             ++  +F  M  E   PD  TL SVL +     +L+    + G +++     +  +  +
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGS 279

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN-GLSNEAIMLFNRMKYAGVNP 319
           LID Y K   +  A  ++ +M+ KDV+++ A++T YA+    S EA+ LF  M++  +  
Sbjct: 280 LIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEI 339

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVF 368
           D +T   +L+ CA I +L +G+ +   A +    +D+  G+           I+DA + F
Sbjct: 340 DDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAF 399

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
            +M   N +SW ++I+    +G  HEA+ L+++M  EG   +PND+TF+ +L AC H+GL
Sbjct: 400 YEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEG--LKPNDITFLSLLFACSHSGL 457

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
             EG   F+ M + + ++P++EHYSCM+DL+AR G L EA++ + +M  K +  + GA+L
Sbjct: 458 TGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAIL 517

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC    +  + +     LL ++  NS NYV+ + I+A    WD + +MR LM  + + K
Sbjct: 518 GACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLMEYRSLKK 577

Query: 549 TPGCSWI 555
            PG S I
Sbjct: 578 IPGYSII 584


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/501 (34%), Positives = 282/501 (56%), Gaps = 18/501 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A +LF ++   +  ++  +I     A      +++L+  M+  GL+PD      +     
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHA-EKAVELFLGMEESGLQPDEVVISCLLAGLG 327

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N   +  G + H+++ +    +   + ++LI+MYA+C ++D A  VF  + +RD  SW+S
Sbjct: 328 NDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387

Query: 191 MISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           M+  Y K G   + +EL+  M+   ++EF  D  +L+S++ SC  LG L LG+    + +
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+    N  + +ALI MYG+CG    AR++F  +  KDVVTW+A+I++Y+  G S +A++
Sbjct: 448 KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           L+++M   GV P+  TL+ V+S+CA++ AL+ G+ +  +    GL  D+           
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYM 567

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A K+F+ M   + V+WN MIS    +G A +AL LF  M  E G  +PN +TF
Sbjct: 568 KCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMM--ERGNVKPNSLTF 625

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC HAGLVD+GR LF  M   + L P  +HY+CMVDL  ++GHL EA D V  MP
Sbjct: 626 LAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  + G LLGAC+   N ++  RV +     +  N G Y++ S  + + + W++  K
Sbjct: 685 IEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEK 744

Query: 537 MRALMREKGVSKTPGCSWIGI 557
           +R +M+  GV K+ G S I I
Sbjct: 745 LRDMMKNHGVEKSIGWSTIDI 765



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 216/439 (49%), Gaps = 23/439 (5%)

Query: 57  FLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQ---KYSHSLKLYYQMKRL 113
           ++  R   ++D   A  LF ++   +  A+  +I G     Q     S+ +++       
Sbjct: 153 YMYARCGSVRD---AVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDG 209

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G +P++ T      +C  L  L+ G  +H    K G+     V  SL +MY +C   + A
Sbjct: 210 GARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDA 269

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R +F E+ E+DLVSW S+I  Y + G+A++AVELF  M E    PDE+ +  +L   G+ 
Sbjct: 270 RILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGND 329

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
             +  GK     +V+     +  +G+ALI MY KC  +  A  VF  +  +D  +W++M+
Sbjct: 330 AKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMV 389

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNP---DKITLIGVLSACASIGALDLGKWVDKYASQR 350
            AY + GL  + + L+  M++   +    D  +LI ++S+C+ +G L LG+    Y+ + 
Sbjct: 390 VAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKH 449

Query: 351 --GLRHDIF---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
             G    +          CG+ D A K+F  +   + V+W+A+IS+ +  G + +ALLL+
Sbjct: 450 LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLY 509

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           ++M  EG   +PN  T + V+S+C +   ++ G  L        GL       + +VD+Y
Sbjct: 510 DQMLTEG--VKPNSATLVSVISSCANLAALEHG-ELIHSHVKDVGLECDLSICTALVDMY 566

Query: 460 ARAGHLSEAWDFVERMPEK 478
            + G L  A    + M E+
Sbjct: 567 MKCGQLGIARKMFDSMLER 585



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 19/340 (5%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ + +N ++R    A   ++ +L  + +M+  G +P  FT P V  + A L AL  G +
Sbjct: 70  PDAFLWNSLLRSRHRA-SDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128

Query: 141 VHSSVFKIGLDEDD---HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           VH+   + GL E D    V+ SL+ MYARCG +  A ++FDE+ ERD+V+W ++ISG   
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188

Query: 198 MGYAKEAVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            G   E +    RM          P+  T+ S L +CG LG+L +G  + GF VK  +  
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + S+L  MY KC +   AR +F  +  KD+V+W ++I AY + G + +A+ LF  M+
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD++ +  +L+   +   +  GK       +R     +            C  +D
Sbjct: 309 ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVD 368

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            A  VF  +   +  SW++M+ A    G   + L L+  M
Sbjct: 369 IAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREM 408



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 25/268 (9%)

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D   WNS++    +       +    RMR     P   T   V  +  +LG L +G  V 
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 244 GFVVKNKM---DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            + V+  +   D +  + S+L+ MY +CG++  A R+FD M  +DVV W A+I+    NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 301 LSNEAIMLFNRMKYA----GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-- 354
              E +    RM  +    G  P+  T+   L AC  +G L +G  +  +  + G+ H  
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 355 ----DIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                +F     C S +DA  +F ++P  + VSW ++I A    G A +A+ LF  M + 
Sbjct: 251 SVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEES 310

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGR 433
           G   +P++V       +C+ AGL ++ +
Sbjct: 311 G--LQPDEVVI-----SCLLAGLGNDAK 331



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 27/273 (9%)

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D   WN+++ +  +       +    RM+ +G  P + T   V SA A +GAL +G  V 
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 345 KYASQRGLRHD--------------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            Y+ + GL                   CGS+ DA+++F++MP  + V+W A+IS    NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 391 RAHEALLLFERMSKEG--GAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGLIP 447
           +  E L    RM +    G ARPN  T    L AC   G +  G  L    + +  G  P
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
                S +  +Y +     +A      +PEK D +   +L+GA  +  +   +++ ++L 
Sbjct: 251 SV--VSSLFSMYTKCDSTEDARILFPELPEK-DLVSWTSLIGAYCRAGH---AEKAVELF 304

Query: 508 LEIESSN-SGNYVISSKIFANLKMWDDSAKMRA 539
           L +E S    + V+ S + A L    + AK+R 
Sbjct: 305 LGMEESGLQPDEVVISCLLAGL---GNDAKVRG 334


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 177/504 (35%), Positives = 275/504 (54%), Gaps = 21/504 (4%)

Query: 63  IDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY 122
           IDL +  +  L    I R N    NVMI   + + +K   +++L+ +M + GL+ D F+ 
Sbjct: 402 IDLSEQVFEDL--DDIQRQN--IVNVMITSFSQS-KKPGKAIRLFTRMLQEGLRTDEFSV 456

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             +    + L  LN G  VH    K GL  D  V  SL T+Y++CG L+ + K+F  I  
Sbjct: 457 CSLL---SVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPF 513

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +D   W SMISG+++ GY +EA+ LF  M ++   PDE TL +VL  C     L  GK +
Sbjct: 514 KDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEI 573

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G+ ++  +D    +GSAL++MY KCG+L  AR+V+D +   D V+ +++I+ Y+Q+GL 
Sbjct: 574 HGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLI 633

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---- 358
            +  +LF  M  +G   D   +  +L A A      LG  V  Y ++ GL  +       
Sbjct: 634 QDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSL 693

Query: 359 -------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                  GSIDD  K F  +   + ++W A+I++ A +G+A+EAL ++  M ++G   +P
Sbjct: 694 LTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKG--FKP 751

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           + VTF+GVLSAC H GLV+E     + M   +G+ P++ HY CMVD   R+G L EA  F
Sbjct: 752 DKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESF 811

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +  M  K D +V G LL AC+     ++ +   +  +E+E S++G Y+  S I A +  W
Sbjct: 812 INNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEW 871

Query: 532 DDSAKMRALMREKGVSKTPGCSWI 555
           D+  + R LM+  GV K PG S +
Sbjct: 872 DEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 217/435 (49%), Gaps = 25/435 (5%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           F  A  +F      N Y +N +I G     Q Y     L+++M     KPD++TY  V  
Sbjct: 201 FEDAYKVFRDSLSANVYCWNTIIAGALRN-QNYGAVFDLFHEMCVGFQKPDSYTYSSVLA 259

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +CA+L  L  G  V + V K G  ED  V  +++ +YA+CG +  A +VF  I    +VS
Sbjct: 260 ACASLEKLRFGKVVQARVIKCGA-EDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVS 318

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W  M+SGY+K   A  A+E+F  MR      +  T+ SV+ +CG    +     V  +V 
Sbjct: 319 WTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVF 378

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVF---DAMVNKDVVTWNAMITAYAQNGLSNE 304
           K+   L+  + +ALI MY K G +  + +VF   D +  +++V  N MIT+++Q+    +
Sbjct: 379 KSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQSKKPGK 436

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           AI LF RM   G+  D+ ++  +LS    +  L+LGK V  Y  + GL  D+        
Sbjct: 437 AIRLFTRMLQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLDLTVGSSLFT 493

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CGS++++ K+F+ +P  +   W +MIS     G   EA+ LF  M  +G +  P++
Sbjct: 494 LYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTS--PDE 551

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
            T   VL+ C     +  G+ +      + G+    +  S +V++Y++ G L  A    +
Sbjct: 552 STLAAVLTVCSSHPSLPRGKEIHGYTLRA-GIDKGMDLGSALVNMYSKCGSLKLARQVYD 610

Query: 474 RMPEKVDEIVLGALL 488
           R+PE +D +   +L+
Sbjct: 611 RLPE-LDPVSCSSLI 624



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 201/422 (47%), Gaps = 24/422 (5%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+ LF  I +P+  + N+MI G     + +  SL+ + +M  LG + +  +Y  V  +C+
Sbjct: 103 AAKLFDTIPQPDVVSCNIMISGYKQH-RLFEESLRFFSKMHFLGFEANEISYGSVISACS 161

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L A      V     K+G    + V  +LI ++++  + + A KVF +    ++  WN+
Sbjct: 162 ALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNT 221

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I+G  +        +LF  M      PD  T  SVL +C  L  L  GK V+  V+K  
Sbjct: 222 IIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCG 281

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
            + + ++ +A++D+Y KCG +  A  VF  + N  VV+W  M++ Y ++  +  A+ +F 
Sbjct: 282 AE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFK 340

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------G 359
            M+++GV  +  T+  V+SAC     +     V  +  + G   D              G
Sbjct: 341 EMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSG 400

Query: 360 SIDDALKVFEDM-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
            ID + +VFED+  +  +   N MI++ + + +  +A+ LF RM +EG   R ++ +   
Sbjct: 401 DIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEG--LRTDEFSVCS 458

Query: 419 VLSA--CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           +LS   C++ G    G  L        GL+      S +  LY++ G L E++   + +P
Sbjct: 459 LLSVLDCLNLGKQVHGYTL------KSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIP 512

Query: 477 EK 478
            K
Sbjct: 513 FK 514



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 23/343 (6%)

Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
           D  ++ SL++ Y+  G +  A K+FD I + D+VS N MISGY +    +E++  F +M 
Sbjct: 83  DVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMH 142

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY--MGSALIDMYGKCGA 270
              F  +EI+  SV+ +C  L   +  + V    +  KM   FY  + SALID++ K   
Sbjct: 143 FLGFEANEISYGSVISACSALQAPLFSELVCCHTI--KMGYFFYEVVESALIDVFSKNLR 200

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
              A +VF   ++ +V  WN +I    +N        LF+ M      PD  T   VL+A
Sbjct: 201 FEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAA 260

Query: 331 CASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSW 379
           CAS+  L  GK V     + G   D+F           CG + +A++VF  +P  + VSW
Sbjct: 261 CASLEKLRFGKVVQARVIKCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSW 319

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
             M+S    +  A  AL +F+ M   G     N+ T   V+SAC    +V E  ++   +
Sbjct: 320 TVMLSGYTKSNDAFSALEIFKEMRHSG--VEINNCTVTSVISACGRPSMVCEASQVHAWV 377

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
             S G    S   + ++ +Y+++G +    D  E++ E +D+I
Sbjct: 378 FKS-GFYLDSSVAAALISMYSKSGDI----DLSEQVFEDLDDI 415



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 114/239 (47%), Gaps = 19/239 (7%)

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + ++  +L+  Y   G++  A ++FD +   DVV+ N MI+ Y Q+ L  E++  F+
Sbjct: 80  LPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFS 139

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFCGSI 361
           +M + G   ++I+   V+SAC+++ A    + V  +  + G            D+F  ++
Sbjct: 140 KMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNL 199

Query: 362 --DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
             +DA KVF D    N   WN +I+    N        LF  M    G  +P+  T+  V
Sbjct: 200 RFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCV--GFQKPDSYTYSSV 257

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMP 476
           L+AC       E  R   ++ +        + + C  +VDLYA+ GH++EA +   R+P
Sbjct: 258 LAACASL----EKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIP 312


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 258/453 (56%), Gaps = 48/453 (10%)

Query: 149 GLDEDDHV-SHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAV 205
           G+ E + + S+S+I ++ R G ++ AR++F+ +R  ERD+VSW++M+S Y +    +EA+
Sbjct: 196 GMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEAL 255

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            LF  M+      DE+ +VS L +C  + ++ +G+WV G  VK  ++    + +ALI +Y
Sbjct: 256 VLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLY 315

Query: 266 GKCGALVPARRVFD--------------------------------AMVNKDVVTWNAMI 293
             CG +V ARR+FD                                +M  KDVV+W+AMI
Sbjct: 316 SSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMI 375

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           + YAQ+   +EA+ LF  M+  GV PD+  L+  +SAC  +  LDLGKW+  Y S+  L+
Sbjct: 376 SGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQ 435

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            ++            CG +++AL+VF  M      +WNA+I  LA NG   ++L +F  M
Sbjct: 436 VNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADM 495

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            K G    PN++TF+GVL AC H GLV++GR  F+ M     +    +HY CMVDL  RA
Sbjct: 496 KKTGTV--PNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRA 553

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G L EA + ++ MP   D    GALLGAC+K ++ ++ +R+ + L++++  + G +V+ S
Sbjct: 554 GLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLS 613

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            I+A+   W +  ++R +M + GV KTPGCS I
Sbjct: 614 NIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMI 646



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/526 (26%), Positives = 250/526 (47%), Gaps = 101/526 (19%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID-------LKDFNYASLLFHQISRP 81
           SLL+ C   +  +Q+ +Q ++  +    +   R+I+       L  F+Y+  +F+ +  P
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVS 140
           N + +N ++R      Q   H   L+Y++      KPD++TYP +   CA  ++   G  
Sbjct: 68  NTFTWNTIMRA-HLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQ 126

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+     G D D +V ++L+ +YA CG + SAR+VF+E    DLVSWN++++GY + G 
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGE 186

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
            +EA  +F      E +P+  T+ S                                 ++
Sbjct: 187 VEEAERVF------EGMPERNTIAS---------------------------------NS 207

Query: 261 LIDMYGKCGALVPARRVFDAM--VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +I ++G+ G +  ARR+F+ +    +D+V+W+AM++ Y QN +  EA++LF  MK +GV 
Sbjct: 208 MIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVA 267

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLR----------------------HDI 356
            D++ ++  LSAC+ +  +++G+WV   A + G+                         I
Sbjct: 268 VDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRI 327

Query: 357 F---------------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
           F                     CGSI DA  +F  MP  + VSW+AMIS  A +    EA
Sbjct: 328 FDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEA 387

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           L LF+ M   G   RP++   +  +SAC H   +D G+ +   +S +  L       + +
Sbjct: 388 LALFQEMQLHG--VRPDETALVSAISACTHLATLDLGKWIHAYISRN-KLQVNVILSTTL 444

Query: 456 VDLYARAGHLSEAWDFVERMPEKV----DEIVLG-ALLGACQKQKN 496
           +D+Y + G +  A +    M EK     + ++LG A+ G+ ++  N
Sbjct: 445 IDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLN 490



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 128/227 (56%), Gaps = 3/227 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A +LF+ +   +  +++ MI G     + +S +L L+ +M+  G++PD         +C 
Sbjct: 356 AEMLFYSMPEKDVVSWSAMISGYAQH-ECFSEALALFQEMQLHGVRPDETALVSAISACT 414

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L  L+ G  +H+ + +  L  +  +S +LI MY +CG +++A +VF  + E+ + +WN+
Sbjct: 415 HLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNA 474

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKN 249
           +I G +  G  ++++ +F  M++   +P+EIT + VLG+C  +G +  G+ +    + ++
Sbjct: 475 VILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEH 534

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
           K++ N      ++D+ G+ G L  A  + D+M +  DV TW A++ A
Sbjct: 535 KIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGA 581


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/533 (31%), Positives = 274/533 (51%), Gaps = 20/533 (3%)

Query: 41  QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H  ++     N +   N +L   +  K+FN    +F ++   N  ++N +I G+   
Sbjct: 93  KQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEG 152

Query: 97  WQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED 153
             K++        + QM    + P+  T   +  +   L  +     +H  + K G D +
Sbjct: 153 NCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSN 212

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             V  +L+  YA+ G +D A+  FDE+  RDLV WN M+S Y+  G   +A  +F  MR 
Sbjct: 213 CFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRL 272

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
           E    D  T  S++ SCG LG   LGK V G +++   DL+  + SAL+DMY K   +  
Sbjct: 273 EGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIED 332

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           AR+ FD M+ K++V+W  M   Y Q+G   E + L   M      PD++ L  +LS+C +
Sbjct: 333 ARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGN 392

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           + A      V  Y  + G    +            CGSI  A + F  +   + +SW ++
Sbjct: 393 LSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSL 452

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           + A AF+G + + + +FE++       RP+ V F+GVLSAC H G V EG   F+LM + 
Sbjct: 453 MGAYAFHGLSKQGVDVFEKILSSN--VRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINV 510

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           + ++P SEHY+ ++DL  RAG L EA + +  MP +     LGA LGAC+  +N  +++ 
Sbjct: 511 YQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVYRNVGLARW 570

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             + L  +E +  G Y + S ++A++  W D A++R LMRE+   K PGCSW+
Sbjct: 571 ASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWM 623



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 194/406 (47%), Gaps = 45/406 (11%)

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A L  L+ G  +H+ V K+G      + + ++ +Y +C + +   K+FDE+  +++VSWN
Sbjct: 84  AKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWN 143

Query: 190 SMISGY----SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           ++I G      K    +     F +M  E   P+ ITL  +L +  +L D+ + + +  F
Sbjct: 144 TLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCF 203

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
           ++K+  D N ++GSAL+D Y K G +  A+  FD + ++D+V WN M++ YA NG+  +A
Sbjct: 204 ILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKA 263

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS----- 360
             +F  M+  GV  D  T   ++++C  +G+  LGK V     +     D+   S     
Sbjct: 264 FGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDM 323

Query: 361 ------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
                 I+DA K F+ M V N VSW  M      +G   E + L + M +      P+++
Sbjct: 324 YSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRV--YTYPDEL 381

Query: 415 TFIGVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
               +LS+C           VHA +V+ G   F  ++++            +V  Y++ G
Sbjct: 382 ALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANA------------LVSAYSKCG 429

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQ----KQKNTDVSQRVMQ 505
            +  A+     + E  D I   +L+GA       ++  DV ++++ 
Sbjct: 430 SIGSAFQSFSSVAEP-DIISWTSLMGAYAFHGLSKQGVDVFEKILS 474


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 256/446 (57%), Gaps = 17/446 (3%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           + + C N+    H   VH+ V   G  +D  +++ L+  YA+   +D A  +FD +  RD
Sbjct: 9   LLLRCRNVF---HIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRD 65

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
             +W+ M+ G++K G        F  +      PD  TL  V+ +C D  DL +G+ +  
Sbjct: 66  SKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHD 125

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            V+K+ +  + ++ ++L+DMY KC  +  A+R+F+ M++KD+VTW  MI AYA    + E
Sbjct: 126 VVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYE 184

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           +++LF+RM+  GV PDK+ ++ V++ACA +GA+   ++ + Y  + G   D+        
Sbjct: 185 SLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMID 244

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CGS++ A +VF+ M   N +SW+AMI+A  ++GR  +A+ LF  M     A  PN 
Sbjct: 245 MYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMML--SCAILPNR 302

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           VTF+ +L AC HAGL++EG R F+ M     + P  +HY+CMVDL  RAG L EA   +E
Sbjct: 303 VTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIE 362

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            M  + DE +  ALLGAC+     +++++    LLE++  N G+YV+ S I+A    W+ 
Sbjct: 363 AMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEK 422

Query: 534 SAKMRALMREKGVSKTPGCSWIGIDD 559
            AK R +M ++ + K PG +WI +D+
Sbjct: 423 VAKFRDMMTQRKLKKIPGWTWIEVDN 448



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 239/463 (51%), Gaps = 42/463 (9%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQK----PNFLLIRIIDLKDFNYASLLFHQISR 80
           E  + LL +C +   ++Q+H  ++ N   +     N LL      K  + A  LF  ++ 
Sbjct: 4   ESCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTM 63

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            +   ++VM+ G   A   ++     + ++ R G+ PDN+T PFV  +C +   L  G  
Sbjct: 64  RDSKTWSVMVGGFAKA-GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRV 122

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H  V K GL  D  V  SL+ MYA+C  ++ A+++F+ +  +DLV+W  MI  Y+    
Sbjct: 123 IHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN- 181

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           A E++ LF RMREE  +PD++ +V+V+ +C  LG +   ++   ++V+N   L+  +G+A
Sbjct: 182 AYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTA 241

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           +IDMY KCG++  AR VFD M  K+V++W+AMI AY  +G   +AI LF+ M    + P+
Sbjct: 242 MIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPN 301

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-W 379
           ++T + +L AC+  G +           + GLR   F  S+      +E+  V  +V  +
Sbjct: 302 RVTFVSLLYACSHAGLI-----------EEGLR---FFNSM------WEEHAVRPDVKHY 341

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL---VDEGRRL 435
             M+  L   GR  EAL L E M+ E      ++  +  +L AC +H+ +         L
Sbjct: 342 TCMVDLLGRAGRLDEALRLIEAMTVE-----KDERLWSALLGACRIHSKMELAEKAANSL 396

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +L   + G      HY  + ++YA+AG   +   F + M ++
Sbjct: 397 LELQPQNPG------HYVLLSNIYAKAGKWEKVAKFRDMMTQR 433


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/498 (31%), Positives = 268/498 (53%), Gaps = 19/498 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           +F +I  P+    ++MI    + + ++     +  ++ QM  +G+KP+ +T+  + I  +
Sbjct: 319 VFARIDEPDVVHCSLMI----SCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVAS 374

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               +N   S+H+ + K G      V  +++ MY + G +  A   FD ++  D+ SWN+
Sbjct: 375 RTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNT 434

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           ++SG+      +  + +F  +  E  L ++ T V +L  C  L DL  G  V   V+K+ 
Sbjct: 435 LLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSG 494

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              ++ +   L+DMY + G    AR VFD +  +DV +W  +++ YA+     +AI  F 
Sbjct: 495 FQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFR 554

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGS 360
            M      P+  TL   LS C+ +  L  G  +  Y  + G    +           CG+
Sbjct: 555 SMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVSSALVDMYVKCGN 614

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           + DA  +F++    + V WN +I   A +G  ++AL  F+ M  EG    P+++TF+GVL
Sbjct: 615 LADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNV--PDEITFVGVL 672

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC HAGL+DEGRR F L+SS +G+ P  EHY+CMVD+ A+AG L+EA   +  MP   D
Sbjct: 673 SACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPD 732

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             +   +LGAC+   N ++++R  + L E +  +  + ++ S I+A+LK W+D AK+R++
Sbjct: 733 ASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSM 792

Query: 541 MREKGVSKTPGCSWIGID 558
           + ++GV K PGCSWI I+
Sbjct: 793 LVDRGVKKEPGCSWIEIN 810



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 179/371 (48%), Gaps = 17/371 (4%)

Query: 111 KRLGLKPDNF-TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           +RL L+ +   +Y      CA   AL  G ++H+ + + G   D  +  SL+ MY +CG+
Sbjct: 51  ERLRLRAEELRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGR 110

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           L  AR VFD +  RD+V+W +M+S  +  G A  A+ LF  M EE  +P+   L + L +
Sbjct: 111 LADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKA 170

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL-VPARRVFDAMVNKDVVT 288
           C    DL     V    VK +   + Y+ S+L++ Y  CG + V  R + D+ V  D V+
Sbjct: 171 CTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSD-VS 229

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WNA++  YA++G   + +++F+++  +G    K TL  VL  C  +G    G+ V     
Sbjct: 230 WNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVI 289

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +RGL  D             C S +DA +VF  +   + V  + MIS    +  A EA  
Sbjct: 290 KRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFD 349

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           +F +MS  G   +PN  TF+G+       G V+  R +   +  S G          +V 
Sbjct: 350 IFMQMSDMG--VKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKS-GFSRTKGVCDAIVG 406

Query: 458 LYARAGHLSEA 468
           +Y + G + +A
Sbjct: 407 MYVKTGAVQDA 417



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 219/466 (46%), Gaps = 22/466 (4%)

Query: 31  LKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNE 83
           L+ C +++ +++   +H ++L +  +   FL   ++++         A  +F  +   + 
Sbjct: 67  LQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDV 126

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
            A+  M+  +T A    + +L+L+ +M   G+ P+ F       +C     L     VH+
Sbjct: 127 VAWTAMVSAITAAGDAGA-ALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHA 185

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
              K+    D +VS SL+  Y  CG++D A +   +   R  VSWN++++ Y++ G   +
Sbjct: 186 QAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAK 245

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
            + +F ++ E      + TL +VL  C +LG    G+ V G V+K  ++ +  + + LI+
Sbjct: 246 VMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIE 305

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
           MY KC +   A  VF  +   DVV  + MI+ + ++ ++ EA  +F +M   GV P++ T
Sbjct: 306 MYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYT 365

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGL-RHDIFC----------GSIDDALKVFEDMP 372
            +G+    +  G ++L + +  +  + G  R    C          G++ DA+  F+ M 
Sbjct: 366 FVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQ 425

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
             +  SWN ++S           L +F+ +  EG  A  N  T++G+L  C     +  G
Sbjct: 426 GPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLA--NKYTYVGILRCCTSLMDLRFG 483

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            ++   +  S G     +    ++D+Y +AG  + A    +R+ E+
Sbjct: 484 CQVHACVLKS-GFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKER 528



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 171/380 (45%), Gaps = 15/380 (3%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           Y+  + ++ ++   G +   +T P V   C  L     G +VH  V K GL+ D  +++ 
Sbjct: 243 YAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNC 302

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           LI MY++C   + A +VF  I E D+V  + MIS + +   A EA ++F +M +    P+
Sbjct: 303 LIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPN 362

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           + T V +       GD+ L + +   +VK+       +  A++ MY K GA+  A   FD
Sbjct: 363 QYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFD 422

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339
            M   D+ +WN +++ +         + +F  +   GV  +K T +G+L  C S+  L  
Sbjct: 423 LMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRF 482

Query: 340 GKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388
           G  V     + G + D           +  G   +A  VF+ +   +  SW  ++S  A 
Sbjct: 483 GCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAK 542

Query: 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448
                +A+  F  M +E    RPND T    LS C     +  G +L      S      
Sbjct: 543 TDEGEKAIECFRSMLREN--KRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSG--WNS 598

Query: 449 SEHYSCMVDLYARAGHLSEA 468
           S   S +VD+Y + G+L++A
Sbjct: 599 SVVSSALVDMYVKCGNLADA 618


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 182/544 (33%), Positives = 299/544 (54%), Gaps = 23/544 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
            L L K        Q+I T+  +N     + L++      DF+ A  +F  +   +  ++
Sbjct: 215 FLRLAKSVHGCIIRQRIETRGPLN-----DALVLMYSRCDDFSSAERIFSNMFNRSIASW 269

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
             MI     + + +  +L+++ +M    + P+  T   V  SCA    L  G SVH    
Sbjct: 270 TAMISCYNRS-RWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAV 328

Query: 147 K-IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
           K I LD DD +  +LI  YA+ GKL    KV   I +R+++SWN +IS Y+  G  KEA+
Sbjct: 329 KHIDLD-DDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEAL 387

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
            +F +M+ +  +PD  +L S + +C ++G L LG  + G+ +K  + L+ ++ ++LIDMY
Sbjct: 388 GIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHI-LDEFVQNSLIDMY 446

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG +  A  +FD + +K VV WN+MI  ++Q G S EAI LF++M    ++ +++T +
Sbjct: 447 SKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFL 506

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
             + AC+ +G L+ GKW+       G++ D+F           CG +  A +VF+ M   
Sbjct: 507 TAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSER 566

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           + VSW+AMI     +G    A+ LF  M +     +PND+TF+ +LSAC H+G V+EG+ 
Sbjct: 567 SVVSWSAMIGGCGMHGDIDAAISLFAEMIQR--EMKPNDITFMNILSACSHSGYVEEGKF 624

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
            F+ M + F + P  EH++CMVDL +RAG L EA+  +  MP   +  + GALL  C+  
Sbjct: 625 YFNSMKN-FEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIH 683

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
           +  D+ + + + LL++ + ++G Y + S I+A    WD S K+R+ M+  G+ K PG S 
Sbjct: 684 QRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYST 743

Query: 555 IGID 558
           I +D
Sbjct: 744 IELD 747



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 236/471 (50%), Gaps = 30/471 (6%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNE 83
           + L + C S + +  +H+ +L+  +        ++I+    +     + L+F     P+ 
Sbjct: 5   MPLFRSCTSLRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDS 64

Query: 84  YAFNVMIRGLTTAWQKY-SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           + + V+I+     W  +   ++ LY +M    +   +F +  V  +CA    L+ G  VH
Sbjct: 65  FMWAVLIK--CHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVH 122

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             + K GLD D  V  SL+ MY   G L +A+KVFD +  RDLVSW+S+IS Y   G + 
Sbjct: 123 GRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESS 182

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E +E+F  +  ++   D +T++S+ G+CG+LG L L K V G +++ +++    +  AL+
Sbjct: 183 EGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALV 242

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MY +C     A R+F  M N+ + +W AMI+ Y ++    +A+ +F  M    V P+ +
Sbjct: 243 LMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAV 302

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRH-DIFCGSIDDAL--------------KV 367
           T++ VLS+CA    L  GK V  YA    ++H D+   S+  AL              KV
Sbjct: 303 TIMAVLSSCAGFNLLREGKSVHCYA----VKHIDLDDDSLGPALIEYYAQFGKLSYCEKV 358

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
              +   N +SWN +IS  A  G   EAL +F +M ++G    P+  +    +SAC + G
Sbjct: 359 LHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQI--PDSFSLSSSISACANVG 416

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L+  G ++         L    +  + ++D+Y++ GH+  A+   +R+  K
Sbjct: 417 LLWLGHQIHGYAIKRHILDEFVQ--NSLIDMYSKCGHVDLAYLIFDRIQSK 465


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 256/452 (56%), Gaps = 15/452 (3%)

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           TY  +   CA+  AL  G  VHS + K G   D  +++ LI MY +CG +  AR VFD+I
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 181 RER--DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238
           +E+  D++SWN +I  Y++ G  KEA+ LF  M  E  + +++TL++ + +C  L     
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G+ V    V  +++ +  +G++L++M+GKC  +  AR VFD++  K++VTWN M+  Y+Q
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF- 357
           N    +AI +F  M   GV PD +T + ++ ACA++ A   G+ V    +  G+  D+  
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 358 ----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                     CG +D+A  +F+ +   N V+W+A+++A A NG   EA+ L+  M +  G
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQ--G 323

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
               N +TF+G+L AC HAG   +G   F  M   FG++P  EHY  ++DL  R+G L  
Sbjct: 324 GLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQL 383

Query: 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527
           + D +  MP + D     ALLGAC+   + D   R+ +L+ E++  +SG Y++ S ++++
Sbjct: 384 SEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSS 443

Query: 528 LKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
               D++ + R  MR +G++K PG S I + D
Sbjct: 444 TGRMDEARRTRKAMRLRGITKQPGLSSIEVKD 475



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 223/450 (49%), Gaps = 40/450 (8%)

Query: 30  LLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLKKC  +K +   +++H+ ++ +       +   +I++         A  +F QI   N
Sbjct: 30  LLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKN 89

Query: 83  EYAFNVMIRGLTTAWQKYS---HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
             A  +   G+  A+ +      +L L+  M   G+  +  T      +CA+L +   G 
Sbjct: 90  --ADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGR 147

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+      L+ D  V  SL+ M+ +C  +D+AR VFD +  ++LV+WN+M++ YS+  
Sbjct: 148 IVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNW 207

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
             K+A+++F  M  E   PD +T ++++ +C  L     G+ V   +  + + ++  +G+
Sbjct: 208 QCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGT 267

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           A++  YGKCG L  AR +FD++  K+ VTW+A++ AYAQNG   EAI L++ M   G+  
Sbjct: 268 AVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEV 327

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW 379
           + IT +G+L AC+  G            S  G+  D F   I D    F  +PV     +
Sbjct: 328 NGITFLGLLFACSHAG-----------RSMDGV--DYFVSMIRD----FGVVPVFEH--Y 368

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
             +I  L  +G+   +  L   M  E     P+   ++ +L AC   G VD G R+ +L+
Sbjct: 369 LNLIDLLGRSGQLQLSEDLINSMPYE-----PDSSAWLALLGACRMHGDVDRGARIAELI 423

Query: 440 SSSFGLIPK-SEHYSCMVDLYARAGHLSEA 468
              + L P+ S  Y  + +LY+  G + EA
Sbjct: 424 ---YELDPEDSGPYILLSNLYSSTGRMDEA 450


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/501 (34%), Positives = 282/501 (56%), Gaps = 18/501 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A +LF ++   +  ++  +I     A      +++L+  M+  GL+PD      +     
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHA-EKAVELFLGMEESGLQPDEVVISCLLAGLG 327

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N   +  G + H+++ +    +   + ++LI+MYA+C ++D A  VF  + +RD  SW+S
Sbjct: 328 NDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSS 387

Query: 191 MISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           M+  Y K G   + +EL+  M+   ++EF  D  +L+S++ SC  LG L LG+    + +
Sbjct: 388 MVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSI 447

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+    N  + +ALI MYG+CG    AR++F  +  KDVVTW+A+I++Y+  G S +A++
Sbjct: 448 KHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           L+++M   GV P+  TL+ V+S+CA++ AL+ G+ +  +    GL  D+           
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYM 567

Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
            CG +  A K+F+ M   + V+WN MIS    +G A +AL LF  M  E G  +PN +TF
Sbjct: 568 KCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMM--ERGNVKPNSLTF 625

Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
           + +LSAC HAGLVD+GR LF  M   + L P  +HY+CMVDL  ++GHL EA D V  MP
Sbjct: 626 LAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            + D  + G LLGAC+   N ++  RV +     +  N G Y++ S  + + + W++  K
Sbjct: 685 IEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEK 744

Query: 537 MRALMREKGVSKTPGCSWIGI 557
           +R +M+  GV K+ G S I I
Sbjct: 745 LRDMMKNHGVEKSIGWSTIDI 765



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 216/439 (49%), Gaps = 23/439 (5%)

Query: 57  FLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQ---KYSHSLKLYYQMKRL 113
           ++  R   ++D   A  LF ++   +  A+  +I G     Q     S+ +++       
Sbjct: 153 YMYARCGSVRD---AVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDG 209

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G +P++ T      +C  L  L+ G  +H    K G+     V  SL +MY +C   + A
Sbjct: 210 GARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDA 269

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R +F E+ E+DLVSW S+I  Y + G+A++AVELF  M E    PDE+ +  +L   G+ 
Sbjct: 270 RILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGND 329

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
             +  GK     +V+     +  +G+ALI MY KC  +  A  VF  +  +D  +W++M+
Sbjct: 330 AKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMV 389

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNP---DKITLIGVLSACASIGALDLGKWVDKYASQR 350
            AY + GL  + + L+  M++   +    D  +LI ++S+C+ +G L LG+    Y+ + 
Sbjct: 390 VAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKH 449

Query: 351 --GLRHDIF---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
             G    +          CG+ D A K+F  +   + V+W+A+IS+ +  G + +ALLL+
Sbjct: 450 LAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLY 509

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           ++M  EG   +PN  T + V+S+C +   ++ G  L        GL       + +VD+Y
Sbjct: 510 DQMLTEG--VKPNSATLVSVISSCANLAALEHG-ELIHSHVKDVGLECDLSICTALVDMY 566

Query: 460 ARAGHLSEAWDFVERMPEK 478
            + G L  A    + M E+
Sbjct: 567 MKCGQLGIARKMFDSMLER 585



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 19/340 (5%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+ + +N ++R    A   ++ +L  + +M+  G +P  FT P V  + A L AL  G +
Sbjct: 70  PDAFLWNSLLRSRHRA-SDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128

Query: 141 VHSSVFKIGLDEDD---HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           VH+   + GL E D    V+ SL+ MYARCG +  A ++FDE+ ERD+V+W ++ISG   
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188

Query: 198 MGYAKEAVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            G   E +    RM          P+  T+ S L +CG LG+L +G  + GF VK  +  
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + S+L  MY KC +   AR +F  +  KD+V+W ++I AY + G + +A+ LF  M+
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME 308

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            +G+ PD++ +  +L+   +   +  GK       +R     +            C  +D
Sbjct: 309 ESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVD 368

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
            A  VF  +   +  SW++M+ A    G   + L L+  M
Sbjct: 369 IAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREM 408



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 25/268 (9%)

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D   WNS++    +       +    RMR     P   T   V  +  +LG L +G  V 
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 244 GFVVKNKM---DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
            + V+  +   D +  + S+L+ MY +CG++  A R+FD M  +DVV W A+I+    NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 301 LSNEAIMLFNRMKYA----GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH-- 354
              E +    RM  +    G  P+  T+   L AC  +G L +G  +  +  + G+ H  
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 355 ----DIF-----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                +F     C S +DA  +F ++P  + VSW ++I A    G A +A+ LF  M + 
Sbjct: 251 SVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEES 310

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGR 433
           G   +P++V       +C+ AGL ++ +
Sbjct: 311 G--LQPDEVVI-----SCLLAGLGNDAK 331



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 122/273 (44%), Gaps = 27/273 (9%)

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D   WN+++ +  +       +    RM+ +G  P + T   V SA A +GAL +G  V 
Sbjct: 71  DAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVH 130

Query: 345 KYASQRGLRHD--------------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            Y+ + GL                   CGS+ DA+++F++MP  + V+W A+IS    NG
Sbjct: 131 AYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNG 190

Query: 391 RAHEALLLFERMSKEG--GAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGLIP 447
           +  E L    RM +    G ARPN  T    L AC   G +  G  L    + +  G  P
Sbjct: 191 QCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCP 250

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
                S +  +Y +     +A      +PEK D +   +L+GA  +  +   +++ ++L 
Sbjct: 251 SV--VSSLFSMYTKCDSTEDARILFPELPEK-DLVSWTSLIGAYCRAGH---AEKAVELF 304

Query: 508 LEIESSN-SGNYVISSKIFANLKMWDDSAKMRA 539
           L +E S    + V+ S + A L    + AK+R 
Sbjct: 305 LGMEESGLQPDEVVISCLLAGL---GNDAKVRG 334


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 275/516 (53%), Gaps = 15/516 (2%)

Query: 56   NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
            N L+   +     + A  +F Q++  +  ++N MI G T +  +   S+ ++  + R  L
Sbjct: 974  NCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEEC-SVGMFVHLLRDSL 1032

Query: 116  KPDNFTYPFVFISCANLLALNH-GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
             PD FT   V  +C++L    +    +H+   K G+  D  VS +LI +Y++ GK++ A 
Sbjct: 1033 LPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAE 1092

Query: 175  KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
             +F      DL SWN+++ GY   G   +A+ L+  M+E     D+ITLV+   + G L 
Sbjct: 1093 FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLV 1152

Query: 235  DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
             L  GK +   VVK   +L+ ++ S ++DMY KCG +  ARRVF  + + D V W  MI+
Sbjct: 1153 GLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMIS 1212

Query: 295  AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
               +NG    A+  +++M+ + V PD+ T   ++ AC+ + AL+ G+ +     +     
Sbjct: 1213 GCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAF 1272

Query: 355  DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            D F           CG+I+DA  +F+        SWNAMI  LA +G A EAL  F+ M 
Sbjct: 1273 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMK 1332

Query: 404  KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
              G    P+ VTFIGVLSAC H+GLV E    F  M  ++G+ P+ EHYSC+VD  +RAG
Sbjct: 1333 SRG--VMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAG 1390

Query: 464  HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
             + EA   +  MP +    +   LL AC+ Q + +  +RV + LL +E S+S  YV+ S 
Sbjct: 1391 RIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSN 1450

Query: 524  IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            ++A    W++ A  R +MR+  V K PG SW+ + +
Sbjct: 1451 VYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKN 1486



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 216/435 (49%), Gaps = 34/435 (7%)

Query: 62   IIDLKDFN-YASLLF------HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114
            I++LK F  YA+ LF        +   N+     + RG   AW+    ++  +  M    
Sbjct: 877  ILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRG--EAWE----AVDCFVDMINSR 930

Query: 115  LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
            +  D  T+  +    A L  L  G  +H  V + GLD+   V + LI MY + G +  AR
Sbjct: 931  VACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRAR 990

Query: 175  KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL- 233
             VF ++ E DL+SWN+MISG +  G  + +V +F  +  +  LPD+ T+ SVL +C  L 
Sbjct: 991  SVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLE 1050

Query: 234  GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
            G   L   +    +K  + L+ ++ +ALID+Y K G +  A  +F      D+ +WNA++
Sbjct: 1051 GGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIM 1110

Query: 294  TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
              Y  +G   +A+ L+  M+ +G   D+ITL+    A   +  L  GK +     +RG  
Sbjct: 1111 HGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFN 1170

Query: 354  HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE-- 400
             D+F           CG ++ A +VF ++P  ++V+W  MIS    NG+   AL  +   
Sbjct: 1171 LDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQM 1230

Query: 401  RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLY 459
            R+SK     +P++ TF  ++ AC     +++GR++  +++  +    P     + +VD+Y
Sbjct: 1231 RLSK----VQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV--MTSLVDMY 1284

Query: 460  ARAGHLSEAWDFVER 474
            A+ G++ +A    +R
Sbjct: 1285 AKCGNIEDARGLFKR 1299



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 190/379 (50%), Gaps = 30/379 (7%)

Query: 22   LLREKLL-------SLLKKCPSTKT----VQQIHTQMLINFIQKPNFLLIRIIDL----K 66
            LLR+ LL       S+L+ C S +       QIH   +   +   +F+   +ID+     
Sbjct: 1027 LLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRG 1086

Query: 67   DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
                A  LF      +  ++N ++ G   +   +  +L+LY  M+  G + D  T     
Sbjct: 1087 KMEEAEFLFVNQDGFDLASWNAIMHGYIVSGD-FPKALRLYILMQESGERSDQITLVNAA 1145

Query: 127  ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             +   L+ L  G  +H+ V K G + D  V+  ++ MY +CG+++SAR+VF EI   D V
Sbjct: 1146 KAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDV 1205

Query: 187  SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
            +W +MISG  + G  + A+  + +MR  +  PDE T  +++ +C  L  L  G+ +   +
Sbjct: 1206 AWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANI 1265

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            VK     + ++ ++L+DMY KCG +  AR +F     + + +WNAMI   AQ+G + EA+
Sbjct: 1266 VKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEAL 1325

Query: 307  MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR--GLRHDI-------- 356
              F  MK  GV PD++T IGVLSAC+  G +    + + Y+ Q+  G+  +I        
Sbjct: 1326 QFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEA-YENFYSMQKNYGIEPEIEHYSCLVD 1384

Query: 357  ---FCGSIDDALKVFEDMP 372
                 G I++A KV   MP
Sbjct: 1385 ALSRAGRIEEAEKVISSMP 1403



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 27/362 (7%)

Query: 135  LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMI 192
            L+ G   H+ +   G   D  V+++LITMYA+CG L SARK+FD   +  RDLV+WN+++
Sbjct: 672  LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 193  SGYSKMG-YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
            S  +     + +   LF  +R         TL  V   C         + + G+ VK  +
Sbjct: 732  SALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGL 791

Query: 252  DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
              + ++  AL+++Y K G +  AR +FD M  +DVV WN M+ AY    L  EA++LF+ 
Sbjct: 792  QWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSE 851

Query: 312  MKYAGVNPDKITL--IGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369
                G  PD +TL  +  +  C     L+L K    YA++               L +++
Sbjct: 852  FHRTGFRPDDVTLRTLSRVVKCKK-NILEL-KQFKAYATK---------------LFMYD 894

Query: 370  DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            D   ++ + WN  +S     G A EA+  F  M     A   + +TF+ +L+       +
Sbjct: 895  D-DGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVAC--DGLTFVVMLTVVAGLNCL 951

Query: 430  DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
            + G+++  ++  S GL       +C++++Y +AG +S A     +M E VD I    ++ 
Sbjct: 952  ELGKQIHGIVMRS-GLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNE-VDLISWNTMIS 1009

Query: 490  AC 491
             C
Sbjct: 1010 GC 1011



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 192/447 (42%), Gaps = 72/447 (16%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV--FIS 128
            A +LF  ++  +   +NVM++       +Y  ++ L+ +  R G +PD+ T   +   + 
Sbjct: 814  ARVLFDGMAVRDVVLWNVMMKAYVDTCLEY-EAMLLFSEFHRTGFRPDDVTLRTLSRVVK 872

Query: 129  CA-NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
            C  N+L L    +  + +F                MY   G               D++ 
Sbjct: 873  CKKNILELKQFKAYATKLF----------------MYDDDGS--------------DVIV 902

Query: 188  WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
            WN  +S + + G A EAV+ F  M       D +T V +L     L  L LGK + G V+
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVM 962

Query: 248  KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
            ++ +D    +G+ LI+MY K G++  AR VF  M   D+++WN MI+    +GL   ++ 
Sbjct: 963  RSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVG 1022

Query: 308  LFNRMKYAGVNPDKITLIGVLSACASI-GALDLGKWVDKYASQRGLRHDIFC-------- 358
            +F  +    + PD+ T+  VL AC+S+ G   L   +   A + G+  D F         
Sbjct: 1023 MFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVY 1082

Query: 359  ---GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
               G +++A  +F +    +  SWNA++     +G   +AL L+  M + G   R + +T
Sbjct: 1083 SKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESG--ERSDQIT 1140

Query: 416  FIGVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
             +    A            +HA +V  G  L DL  +           S ++D+Y + G 
Sbjct: 1141 LVNAAKAAGGLVGLKQGKQIHAVVVKRGFNL-DLFVT-----------SGVLDMYLKCGE 1188

Query: 465  LSEAWDFVERMPEKVDEIVLGALLGAC 491
            +  A      +P   D++    ++  C
Sbjct: 1189 MESARRVFSEIPSP-DDVAWTTMISGC 1214



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 204/507 (40%), Gaps = 82/507 (16%)

Query: 2    LLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPST----------KTVQQIHTQMLINF 51
            ++ A  + R  A T   +P   R  L+  L +C S              ++ H ++L + 
Sbjct: 627  MIMALMHLRLRAATSTANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSG 686

Query: 52   IQKPNFLLIRIIDL----KDFNYASLLFHQISRPNE--YAFNVMIRGLTTAWQKYSHSLK 105
                 F+   +I +       + A  LF      N     +N ++  L     K      
Sbjct: 687  HHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFH 746

Query: 106  LYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165
            L+  ++R  +     T   VF  C    + +   S+H    KIGL  D  V+ +L+ +YA
Sbjct: 747  LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYA 806

Query: 166  RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
            + G +  AR +FD +  RD+V WN M+  Y       EA+ LF       F PD++TL +
Sbjct: 807  KFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRT 866

Query: 226  VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL-IDMYGKCGALVPARRVFDAMVNK 284
                   L  +V  K       KN ++L  +   A  + MY   G+              
Sbjct: 867  -------LSRVVKCK-------KNILELKQFKAYATKLFMYDDDGS-------------- 898

Query: 285  DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
            DV+ WN  ++ + Q G + EA+  F  M  + V  D +T + +L+  A +  L+LGK + 
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 345  KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
                + GL   +             GS+  A  VF  M   + +SWN MIS    +G   
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 394  EALLLFERMSKEGGAARPNDVTFIGVLSAC------------VHAGLVDEGRRLFDLMSS 441
             ++ +F  + ++  +  P+  T   VL AC            +HA  +  G  L   +S+
Sbjct: 1019 CSVGMFVHLLRD--SLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVST 1076

Query: 442  SFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +            ++D+Y++ G + EA
Sbjct: 1077 A------------LIDVYSKRGKMEEA 1091


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/488 (31%), Positives = 269/488 (55%), Gaps = 16/488 (3%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
            +N MI   + + ++   +  ++ +M+  G + D  T+  +  +C N   L HG  V  S
Sbjct: 78  TWNSMISAYSIS-ERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRES 136

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           + +   + D  V  +LITMYARC   ++A +VF  +++++L++W+++I+ ++  G+  EA
Sbjct: 137 ISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEA 196

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           +  F  M++E  LP+ +T +S+L        L     +   + ++ +D    M +AL+++
Sbjct: 197 LRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNV 256

Query: 265 YGKC--GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           YG+C  G L  A  +   M  + +  WN +I  Y  +G S EA+  + R++   +  DK+
Sbjct: 257 YGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKV 316

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T I VL+AC S  +L  GK +   A + GL  D+            CGS+++A ++F+ M
Sbjct: 317 TFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSM 376

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P+ + VSWN M+ A A +G + E L L  +M +EG   + N +TF+ VLS+C HAGL+ E
Sbjct: 377 PIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG--VKLNGITFVSVLSSCSHAGLIAE 434

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G + F  +    G+  K+EHY C+VDL  RAG L EA  ++ +MP + + +   +LLGAC
Sbjct: 435 GCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGAC 494

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +  K+ D  +   + LLE++  NS   V+ S I++    W ++AK+R  M  + V K PG
Sbjct: 495 RVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPG 554

Query: 552 CSWIGIDD 559
            S I + +
Sbjct: 555 ISSIQVKN 562



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 193/377 (51%), Gaps = 18/377 (4%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+K +  T+  V  S  +  AL  G  +HS V +     D  V+ +L+  Y +CG L  A
Sbjct: 5   GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           RKVFD +  R + +WNSMIS YS    + EA  +F RM+ E    D +T +S+L +C + 
Sbjct: 65  RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
            +L  GK V   + +   +L+ ++G+ALI MY +C +   A +VF  M  K+++TW+A+I
Sbjct: 125 ENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAII 184

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           TA+A +G   EA+  F  M+  G+ P+++T I +L+   +   L+    +    ++ GL 
Sbjct: 185 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 244

Query: 354 HDIF-------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
                             G +D A  + ++M      +WN +I+    +GR+ EAL  ++
Sbjct: 245 DTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQ 304

Query: 401 RMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
           R+  E   A P D VTFI VL+AC  +  + EG ++    +   GL       + + ++Y
Sbjct: 305 RLQLE---AIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMY 360

Query: 460 ARAGHLSEAWDFVERMP 476
           ++ G +  A    + MP
Sbjct: 361 SKCGSMENARRIFDSMP 377



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 215/439 (48%), Gaps = 60/439 (13%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF---------LLIRIIDLKDFNYASLL 74
           R   LS+L  C + + +Q  H + +   I + +F         L+      +    A+ +
Sbjct: 111 RVTFLSILDACVNPENLQ--HGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQV 168

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           F ++ + N   ++ +I    TA+  + H   +L+ +  M++ G+ P+  T    FIS  N
Sbjct: 169 FGRMKQKNLITWSAII----TAFADHGHCGEALRYFRMMQQEGILPNRVT----FISLLN 220

Query: 132 LLALNHGVS----VHSSVFKIGLDEDDHVSHSLITMYARC--GKLDSARKVFDEIRERDL 185
                 G+     +H  + + GLD+   +S++L+ +Y RC  G+LD A  +  E+ E+ +
Sbjct: 221 GFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQI 280

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
            +WN +I+GY+  G ++EA+E + R++ E    D++T +SVL +C     L  GK +   
Sbjct: 281 TAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSN 340

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            V+  +D +  + +AL +MY KCG++  ARR+FD+M  +  V+WN M+ AYAQ+G S E 
Sbjct: 341 AVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEV 400

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDA 364
           + L  +M+  GV  + IT + VLS+C+  G +  G ++       RG+            
Sbjct: 401 LKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIE----------- 449

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC- 423
                   V  E  +  ++  L   G+  EA     +M  E     P  VT+  +L AC 
Sbjct: 450 --------VKTE-HYGCLVDLLGRAGKLQEAEKYISKMPSE-----PEIVTWASLLGACR 495

Query: 424 VHAGLVDEG----RRLFDL 438
           VH  L D G    R+L +L
Sbjct: 496 VHKDL-DRGKLAARKLLEL 513



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 16/179 (8%)

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M   GV  + IT + VL++     AL  GK++     +     D+F           CGS
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           + DA KVF+ MP  +  +WN+MISA + + R+ EA  +F+RM  EG   R + VTF+ +L
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEG--ERCDRVTFLSIL 118

Query: 421 SACVHAGLVDEGRRLFDLMS-SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            ACV+   +  G+ + + +S +SF L       + ++ +YAR      A     RM +K
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVG--TALITMYARCRSPENAAQVFGRMKQK 175


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 273/502 (54%), Gaps = 17/502 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFVFIS 128
           A ++F   +  N  ++N M+ G +     +  +  +  QM   G  +K D  T       
Sbjct: 96  AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHG-TFDVLRQMLAGGEDVKADEVTILNAVPV 154

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C +   L     +H    K     ++ V+++ +  YA+CG L  A++VF  IR + + SW
Sbjct: 155 CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 214

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++I G+++    + +++   +M+    LPD  T+ S+L +C  L  L LGK V GF+++
Sbjct: 215 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 274

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N ++ + ++  +++ +Y  CG L   + +FDAM +K +V+WN +IT Y QNG  + A+ +
Sbjct: 275 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 334

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F +M   G+    I+++ V  AC+ + +L LG+    YA +  L  D F           
Sbjct: 335 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 394

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            GSI  + KVF  +   +  SWNAMI     +G A EA+ LFE M + G    P+D+TF+
Sbjct: 395 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTG--HNPDDLTFL 452

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV-ERMP 476
           GVL+AC H+GL+ EG R  D M SSFGL P  +HY+C++D+  RAG L +A   V E M 
Sbjct: 453 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 512

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
           E+ D  +  +LL +C+  +N ++ ++V   L E+E     NYV+ S ++A L  W+D  K
Sbjct: 513 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 572

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R  M E  + K  GCSWI ++
Sbjct: 573 VRQRMNEMSLRKDAGCSWIELN 594



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 184/376 (48%), Gaps = 18/376 (4%)

Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
           PD  T   V   CA    +  G  VH    K+ LD++  ++++L+ MY++CG + +A+ +
Sbjct: 40  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 99

Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE--EEFLPDEITLVSVLGSCGDLG 234
           F     +++VSWN+M+ G+S  G      ++  +M    E+   DE+T+++ +  C    
Sbjct: 100 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHES 159

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L   K +  + +K +   N  + +A +  Y KCG+L  A+RVF  + +K V +WNA+I 
Sbjct: 160 FLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 219

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +AQ+     ++    +MK +G+ PD  T+  +LSAC+ + +L LGK V  +  +  L  
Sbjct: 220 GHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLER 279

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           D+F           CG +     +F+ M   + VSWN +I+    NG    AL +F +M 
Sbjct: 280 DLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMV 339

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC-MVDLYARA 462
             G   +   ++ + V  AC     +  GR           L+      +C ++D+YA+ 
Sbjct: 340 LYG--IQLCGISMMPVFGACSLLPSLRLGREAHAYALKH--LLEDDAFIACSLIDMYAKN 395

Query: 463 GHLSEAWDFVERMPEK 478
           G ++++      + EK
Sbjct: 396 GSITQSSKVFNGLKEK 411



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 129/258 (50%), Gaps = 19/258 (7%)

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVL 238
           R+ VSWNSMI  +S  G+++E+  L G M EE     F+PD  TLV+VL  C    ++ L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           GK V G+ VK ++D    + +AL+DMY KCG +  A+ +F    NK+VV+WN M+  ++ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 299 NGLSNEAIMLFNRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
            G ++    +  +M   G  V  D++T++  +  C     L   K +  Y+ ++   ++ 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                       CGS+  A +VF  +      SWNA+I   A +     +L    +M   
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 406 GGAARPNDVTFIGVLSAC 423
           G    P+  T   +LSAC
Sbjct: 241 G--LLPDSFTVCSLLSAC 256



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 173/359 (48%), Gaps = 29/359 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLS   K  S +  +++H  ++ N++++  F+ + ++ L     +      LF  +   +
Sbjct: 252 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 311

Query: 83  EYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N +I G L   +     +L ++ QM   G++    +   VF +C+ L +L  G   
Sbjct: 312 LVSWNTVITGYLQNGFP--DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 369

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K  L++D  ++ SLI MYA+ G +  + KVF+ ++E+   SWN+MI GY   G A
Sbjct: 370 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 429

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMGSA 260
           KEA++LF  M+     PD++T + VL +C   G +  G ++++       +  N    + 
Sbjct: 430 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 489

Query: 261 LIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITA--YAQNGLSNE--AIMLFNRMKY 314
           +IDM G+ G L  A RV    +++  DV  W +++++    QN    E  A  LF   + 
Sbjct: 490 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF---EL 546

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVD-KYASQR----GLRHDIFCGSIDDALKVF 368
               P+   L+  L A        LGKW D +   QR     LR D  C  I+   KVF
Sbjct: 547 EPEKPENYVLLSNLYA-------GLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 598


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/490 (35%), Positives = 265/490 (54%), Gaps = 24/490 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF QI  P+  ++N +I       +  + +L L+  M+ +GL  D FT   V  +C 
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGET-APALGLFSGMREMGLDMDGFTLSAVITACC 151

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWN 189
           + + L     +HS     G D    V+++L+T Y + G LD A++VF  +   RD VSWN
Sbjct: 152 DDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI  Y +     +A+ LF  M       D  TL SVL +   L DL  G    G ++K 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 250 KMDLNFYMGSALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEAIM 307
               N ++GS LID+Y KCG  +   R+VF+ +   D+V WN M++ Y+QN     +A+ 
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367
            F +M+  G  P+  + + V+SAC+++ +   GK +   A +R                +
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKR----------------L 373

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F+ M   N VS N+MI+  A +G   E+L LF+ M +   A  P  +TFI VLSAC H G
Sbjct: 374 FDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA--PTSITFISVLSACAHTG 431

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            V+EG   F++M   F + P++EHYSCM+DL  RAG LSEA + + RMP     I   +L
Sbjct: 432 RVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASL 491

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           LGAC+   N +++ +    +L++E SN+  YV+ S ++A+   W++ A +R  MR++GV 
Sbjct: 492 LGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 551

Query: 548 KTPGCSWIGI 557
           K PGCSWI +
Sbjct: 552 KKPGCSWIEV 561



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 54/284 (19%)

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR--------- 276
           +L +C    DL  GK +    +K+ +  + Y  +  I +Y KCG L  AR+         
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 277 ----------------------VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
                                 +FD +   D+V++N +I+AYA  G +  A+ LF+ M+ 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 315 AGVNPDKITLIGVLSACAS----IGALD---LGKWVDKYASQRG--LRHDIFCGSIDDAL 365
            G++ D  TL  V++AC      IG L    +    D Y S     L +    G +DDA 
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAK 193

Query: 366 KVFEDM-PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-- 422
           +VF  M  + +EVSWN+MI A   +    +AL LF+ M + G     +  T   VL+A  
Sbjct: 194 RVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG--LNVDMFTLASVLTAFT 251

Query: 423 CVH---AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           C+     GL   G+ +        G    S   S ++DLY++ G
Sbjct: 252 CLEDLSGGLQFHGQLI------KTGFHQNSHVGSGLIDLYSKCG 289


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 281/511 (54%), Gaps = 22/511 (4%)

Query: 29  SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           +LLK+  ++K++   +Q+H+QM+ N +    +L   ++ +       + A   F  I + 
Sbjct: 426 ALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQR 485

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N +++ ++I  L    +  S  L+L   M   G + +  T+  +  +C+    L+ G ++
Sbjct: 486 NVFSWTILISLLVQNGEA-SEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTI 544

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  +   GL+ D   S++L+ MY  C  LD AR VF+ +  RD+VSW  +IS Y+  GY 
Sbjct: 545 HERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYP 604

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA++L+ RM +E   PD +TL+SVL +C  L  LV GK +   +V + ++ + ++G+A+
Sbjct: 605 LEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAV 664

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +  YGKC A+  AR+VFD +++KD+V WNAMI AYAQN    +A  L+  M    + P+ 
Sbjct: 665 VSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPND 724

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRG-LRHDIF-----------CGSIDDALKVFE 369
           +TLI +L +C+S   ++ G  + + A+ RG L H              CG+++ A   FE
Sbjct: 725 VTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFE 784

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            +   N VSW+++++A A NG    A  LF  M+++G    PN VTF  VL AC HAGL 
Sbjct: 785 SVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDG--VLPNIVTFTSVLHACSHAGLA 842

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
           DEG   F  M     L P  EHY CMV+L A++G + +A  F+  MP + D     +LLG
Sbjct: 843 DEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLG 902

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           AC+   + +      + LL+ E  NS  YV+
Sbjct: 903 ACEVHTDKEYGALAAKQLLDAEPRNSAAYVL 933



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/437 (31%), Positives = 231/437 (52%), Gaps = 28/437 (6%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +ISRP+  +++  I      W+    ++K +  M   G+KP+  T   V  +CA + 
Sbjct: 270 VFLRISRPSVISWSAFIAAYGQHWE----AIKTFELMNLEGVKPNATTLTSVLRACATVG 325

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           A   G  +H+ V      ++  V ++  ++YA+C ++  A +VF  I  +D VSWN+++S
Sbjct: 326 AHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVS 385

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC---------GDLGDLVLGKWVEG 244
            Y+K G  ++A+ L  +M+ E F+PD+IT +++L SC         G+   L  G+ V  
Sbjct: 386 AYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHS 445

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            ++ N +D + Y+G+ L+ MYG+CG+L  AR  F  +  ++V +W  +I+   QNG ++E
Sbjct: 446 QMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASE 505

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
            + L   M   G   +KIT I +L AC+  G L LGK + +    +GL  DI        
Sbjct: 506 GLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLN 565

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               C S+D+A  VFE M   + VSW  +ISA A  G   EAL L+ RM +E   +RP+ 
Sbjct: 566 MYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQE--FSRPDA 623

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           VT I VL AC     + EG+ + + + +S G+       + +V  Y +   + +A    +
Sbjct: 624 VTLISVLEACASLRALVEGKAIHERIVAS-GVETDVFVGTAVVSFYGKCEAVEDARQVFD 682

Query: 474 RMPEKVDEIVLGALLGA 490
           R+ +K D +   A++GA
Sbjct: 683 RILDK-DIVCWNAMIGA 698



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 190/388 (48%), Gaps = 27/388 (6%)

Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
            +++LY   +  G KPD  T+  +  +C     L  G  +H          D  V + LI
Sbjct: 94  QAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLI 153

Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
           +MY+ CG LD A  VF+     D+ +W ++I+ Y++ G  + A   + +M +E    +EI
Sbjct: 154 SMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEI 213

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV-PARRVFDA 280
           T ++VL +C  L  L  GK V    + + +D +  M ++LI MYGKC      AR VF  
Sbjct: 214 TFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLR 273

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           +    V++W+A I AY Q+    EAI  F  M   GV P+  TL  VL ACA++GA + G
Sbjct: 274 ISRPSVISWSAFIAAYGQHW---EAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQG 330

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           + +           +             C  + DA +VF  +P  + VSWNA++SA A  
Sbjct: 331 RRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQ 390

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE---------GRRLFDLMS 440
           G   +A+ L  +M  EG    P+D+TFI +L +C  + L+ +         GR++   M 
Sbjct: 391 GLFRDAIFLSRQMQVEGFV--PDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMI 448

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           S+ GL   +   + +V +Y R G L +A
Sbjct: 449 SN-GLDGDTYLGNLLVQMYGRCGSLDDA 475



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 199/402 (49%), Gaps = 37/402 (9%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           G+  D  T      +CA L     G  +H+ +   GL     +S+SL+ MY +CG ++ A
Sbjct: 5   GVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEA 64

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           R  FD + ERDL+SWN+MI+ Y++    K+A++L+   R E   PDE+T  S+L +C   
Sbjct: 65  RNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFAS 124

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           GDL  G+ +    +      +  + + LI MY  CG+L  A  VF+     DV TW  +I
Sbjct: 125 GDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVI 184

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL- 352
            AY ++G    A   +++M   G+  ++IT + VL  C+S+  L+ GK V + A   GL 
Sbjct: 185 AAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLD 244

Query: 353 -----------------RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEA 395
                            RH       D+A +VF  +   + +SW+A I+A    G+  EA
Sbjct: 245 FSLRMENSLISMYGKCSRHP------DEAREVFLRISRPSVISWSAFIAAY---GQHWEA 295

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455
           +  FE M+ EG   +PN  T   VL AC   G  ++GRR+  L+ +     P +++ + +
Sbjct: 296 IKTFELMNLEG--VKPNATTLTSVLRACATVGAHEQGRRIHALVLAG----PYTQNTTVL 349

Query: 456 ---VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
                LYA+   +++A      +P K D +   A++ A  KQ
Sbjct: 350 NAAASLYAKCSRVADASRVFSSIPCK-DAVSWNAIVSAYAKQ 390



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 25/179 (13%)

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M   GV  D+ITL+  +SACA++G    GK +       GL   +            CGS
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           +++A   F+ MP  + +SWNAMI+  A +    +A+ L+     EG   +P++VTF  +L
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEG--TKPDEVTFASLL 118

Query: 421 SACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSC--MVDLYARAGHLSEA-----WDF 471
           +AC  +G +  GR L +  + +SF     S+   C  ++ +Y+  G L +A     W F
Sbjct: 119 NACFASGDLKFGRMLHEHFLGTSF----VSDQIVCNGLISMYSDCGSLDDATAVFEWSF 173


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/498 (34%), Positives = 264/498 (53%), Gaps = 17/498 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +   N  + N+++ G  ++  ++  SL+L   ++ +    + +       + A
Sbjct: 64  ARTVFDAMPFRNAVSANLLMSGYASS-GRHKESLQL---LRVVDFGMNEYVLSAAVSATA 119

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           N+ + + G   H    K G  E  +V ++++ MY +C  ++ A KVF+ +   D  ++NS
Sbjct: 120 NVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNS 179

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+GY   G    ++ +   M  E    D ++ V+VLG C  + D VLG  V    +K +
Sbjct: 180 MINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKR 239

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           ++LN Y+GSAL+DMYGKC  +  A R F+ +  K+VV+W A++TAY QN L  +A+ LF 
Sbjct: 240 LELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFL 299

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------G 359
            M+  GV P++ T    L++CA + AL  G  +     + G    +             G
Sbjct: 300 DMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSG 359

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           SI+DA +VF  MP+ + VSWN +I+  A +G A E +  F  M     A  P+ VTF+GV
Sbjct: 360 SIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLS--AAVIPSYVTFVGV 417

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC   GLVDE     + M    G+ P  EHY+CMV L  R G L EA  F+       
Sbjct: 418 LSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGT 477

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D +   +LL +CQ  KN  +  RV + +L++E S+ G YV+ S ++A    WD   K+R 
Sbjct: 478 DVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRK 537

Query: 540 LMREKGVSKTPGCSWIGI 557
            MRE+ V K+PG SWI +
Sbjct: 538 HMRERAVRKSPGVSWIHV 555



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 166/335 (49%), Gaps = 29/335 (8%)

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           +LI+ YA+CG++  AR VFD +  R+ VS N ++SGY+  G  KE+++L   +R  +F  
Sbjct: 50  NLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQL---LRVVDFGM 106

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
           +E  L + + +  ++    +G+   G+ VK       Y+ +A++ MY +C  +  A +VF
Sbjct: 107 NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVF 166

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           +++   D   +N+MI  Y   G  + ++ +   M       D ++ + VL  CAS+    
Sbjct: 167 ESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSV 226

Query: 339 LGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALA 387
           LG  V   A ++ L  +++ GS           + DA + FE +P  N VSW A+++A  
Sbjct: 227 LGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYT 286

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            N    +AL LF  M  EG   +PN+ T+   L++C     +  G  L          + 
Sbjct: 287 QNELYEDALQLFLDMEMEG--VQPNEFTYAVALNSCAGLAALRTGNAL-------GACVM 337

Query: 448 KSEHY------SCMVDLYARAGHLSEAWDFVERMP 476
           K+ H+      + ++++Y+++G + +A      MP
Sbjct: 338 KTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMP 372


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 277/496 (55%), Gaps = 16/496 (3%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCAN 131
           LLF ++   +  ++  +I G      +   +L+++ +M   G+  P+ F +  VF +C  
Sbjct: 198 LLFGRMREKDPISWGSIIAGFAQQGCEM-EALQIFREMVAEGMHHPNEFHFGSVFSACGV 256

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L +L +G  +HS   K  LD + +   SL  MYARC KL+SA++VF  I   DLVSWNS+
Sbjct: 257 LGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSI 316

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I+  S  G   EA+ L   MR     PD IT+  +L +C     +  G+ +  ++VK  +
Sbjct: 317 INACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGL 376

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
           D +  + ++L+ MY +C     A  VF    ++DVVTWN+++TA  Q+        LFN 
Sbjct: 377 DGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNL 436

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           ++ +  + D+I+L  VLSA A +G  ++ K V     + GL +D             CGS
Sbjct: 437 LQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGS 496

Query: 361 IDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +DDA+K+FE M   ++V SW+++I   A +G   +AL LF RM   G   RPN VTF+GV
Sbjct: 497 LDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLG--VRPNHVTFVGV 554

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC   GLVDEG   + +M    G++P  EH SC++DL ARAG L+EA  FV++MP + 
Sbjct: 555 LTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPFEP 614

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D ++   LL   +   + ++ +R  + +L I+ S+S  YV+   I++    W++ A+++ 
Sbjct: 615 DIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARLKK 674

Query: 540 LMREKGVSKTPGCSWI 555
            MR  GV K+PG SW+
Sbjct: 675 AMRSSGVKKSPGKSWV 690



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 208/422 (49%), Gaps = 16/422 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A L+F ++   N  ++  +I       ++ + +L L+  M R G  PD F       +CA
Sbjct: 95  ARLVFDEMPAKNPVSWASVIAAHAQN-RRSTDALGLFSSMLRSGTAPDQFALGSTVRACA 153

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  +  G  VH+   K     D  V ++L+TMY++ G +     +F  +RE+D +SW S
Sbjct: 154 ELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGS 213

Query: 191 MISGYSKMGYAKEAVELFGRMREEEF-LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +I+G+++ G   EA+++F  M  E    P+E    SV  +CG LG L  G+ +    VK 
Sbjct: 214 IIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKY 273

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           ++D N Y G +L DMY +C  L  A+RVF  +   D+V+WN++I A +  GL +EA++L 
Sbjct: 274 RLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLL 333

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           + M+ +G+ PD IT+ G+L AC    A+  G+ +  Y  + GL  D+            C
Sbjct: 334 SEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARC 393

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
                A+ VF +    + V+WN++++A   +        LF  + +       + ++   
Sbjct: 394 MDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRS--LPSLDRISLNN 451

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSA    G  +  +++    +   GL+  +   + ++D YA+ G L +A    E M   
Sbjct: 452 VLSASAELGYFEMVKQVHTC-TFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTN 510

Query: 479 VD 480
            D
Sbjct: 511 SD 512



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 19/394 (4%)

Query: 129 CANLLALNHGVSVHSSVFK---IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
           C+ L AL  G  VH  +       L  +  +++ LITMY RC   +SAR VFDE+  ++ 
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNP 107

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           VSW S+I+ +++   + +A+ LF  M      PD+  L S + +C +LGD+ +G+ V   
Sbjct: 108 VSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQ 167

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
            +K++   +  + +AL+ MY K G +     +F  M  KD ++W ++I  +AQ G   EA
Sbjct: 168 AMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEA 227

Query: 306 IMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           + +F  M   G+ +P++     V SAC  +G+L+ G+ +   + +  L H+ +       
Sbjct: 228 LQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSD 287

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               C  ++ A +VF  +   + VSWN++I+A +  G   EA++L   M   G   RP+ 
Sbjct: 288 MYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEM--RGSGLRPDG 345

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +T  G+L ACV    +  GR +   +    GL       + ++ +YAR    S A D   
Sbjct: 346 ITVRGLLCACVGCDAIQHGRLMHSYL-VKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFH 404

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
              ++ D +   ++L AC + ++ +V  ++  LL
Sbjct: 405 ETRDR-DVVTWNSILTACVQHQHLEVVFKLFNLL 437


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 273/502 (54%), Gaps = 17/502 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFVFIS 128
           A ++F   +  N  ++N M+ G +     +  +  +  QM   G  +K D  T       
Sbjct: 346 AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHG-TFDVLRQMLAGGEDVKADEVTILNAVPV 404

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C +   L     +H    K     ++ V+++ +  YA+CG L  A++VF  IR + + SW
Sbjct: 405 CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 464

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++I G+++    + +++   +M+    LPD  T+ S+L +C  L  L LGK V GF+++
Sbjct: 465 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 524

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N ++ + ++  +++ +Y  CG L   + +FDAM +K +V+WN +IT Y QNG  + A+ +
Sbjct: 525 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F +M   G+    I+++ V  AC+ + +L LG+    YA +  L  D F           
Sbjct: 585 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 644

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            GSI  + KVF  +   +  SWNAMI     +G A EA+ LFE M + G    P+D+TF+
Sbjct: 645 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTG--HNPDDLTFL 702

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV-ERMP 476
           GVL+AC H+GL+ EG R  D M SSFGL P  +HY+C++D+  RAG L +A   V E M 
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 762

Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
           E+ D  +  +LL +C+  +N ++ ++V   L E+E     NYV+ S ++A L  W+D  K
Sbjct: 763 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 822

Query: 537 MRALMREKGVSKTPGCSWIGID 558
           +R  M E  + K  GCSWI ++
Sbjct: 823 VRQRMNEMSLRKDAGCSWIELN 844



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 215/429 (50%), Gaps = 31/429 (7%)

Query: 22  LLREKLLSLLKKCPSTKTVQ---QIHTQMLI--NFIQKPNFLLIRIIDLKDF----NYAS 72
           L+RE L  LL+     K ++   +IH Q++     ++  + L  RII +       + + 
Sbjct: 82  LVREALGLLLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSR 140

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCAN 131
            +F  +   N + +N +I   +   + Y   L+ + +M     L PD+FTYP V  +CA 
Sbjct: 141 FVFDALRSKNLFQWNAVISSYSRN-ELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           +  +  G++VH  V K GL ED  V ++L++ Y   G +  A ++FD + ER+LVSWNSM
Sbjct: 200 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 259

Query: 192 ISGYSKMGYAKEAVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           I  +S  G+++E+  L G M EE     F+PD  TLV+VL  C    ++ LGK V G+ V
Sbjct: 260 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 319

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K ++D    + +AL+DMY KCG +  A+ +F    NK+VV+WN M+  ++  G ++    
Sbjct: 320 KLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFD 379

Query: 308 LFNRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           +  +M   G  V  D++T++  +  C     L   K +  Y+ ++   ++          
Sbjct: 380 VLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 439

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CGS+  A +VF  +      SWNA+I   A +     +L    +M   G    P+  
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISG--LLPDSF 497

Query: 415 TFIGVLSAC 423
           T   +LSAC
Sbjct: 498 TVCSLLSAC 506



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           L  DD +   +ITMYA CG  D +R VFD +R ++L  WN++IS YS+     E +E F 
Sbjct: 116 LRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFI 175

Query: 210 RM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            M    + LPD  T   V+ +C  + D+ +G  V G VVK  +  + ++G+AL+  YG  
Sbjct: 176 EMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTH 235

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY----AGVNPDKITL 324
           G +  A ++FD M  +++V+WN+MI  ++ NG S E+ +L   M          PD  TL
Sbjct: 236 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATL 295

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
           + VL  CA    + LGK V  +A +  L  ++            CG I +A  +F+    
Sbjct: 296 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNN 355

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            N VSWN M+   +  G  H    +  +M   G   + ++VT +  +  C H   +   +
Sbjct: 356 KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK 415

Query: 434 RL 435
            L
Sbjct: 416 EL 417



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 173/359 (48%), Gaps = 29/359 (8%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLS   K  S +  +++H  ++ N++++  F+ + ++ L     +      LF  +   +
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 561

Query: 83  EYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N +I G L   +     +L ++ QM   G++    +   VF +C+ L +L  G   
Sbjct: 562 LVSWNTVITGYLQNGFP--DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K  L++D  ++ SLI MYA+ G +  + KVF+ ++E+   SWN+MI GY   G A
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMGSA 260
           KEA++LF  M+     PD++T + VL +C   G +  G ++++       +  N    + 
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739

Query: 261 LIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITA--YAQNGLSNE--AIMLFNRMKY 314
           +IDM G+ G L  A RV    +++  DV  W +++++    QN    E  A  LF   + 
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF---EL 796

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVD-KYASQR----GLRHDIFCGSIDDALKVF 368
               P+   L+  L A        LGKW D +   QR     LR D  C  I+   KVF
Sbjct: 797 EPEKPENYVLLSNLYA-------GLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 848


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 278/508 (54%), Gaps = 31/508 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMI-----RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           A  LF ++   +  ++  +I     RGL T       +++L+ QM   GL+PD      V
Sbjct: 274 ACALFLELPEKDVVSWTSLIGIYCRRGLIT------EAMELFQQMMESGLQPDEILVSCV 327

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
                N   ++ G + H+ + K    +   + ++LI+MY +   +DSA +VF  + +RD 
Sbjct: 328 LSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDA 387

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMR---EEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
            SWN M+ GY K G   + +EL+  M+   + EF     +LVS + SC  L +L LG+  
Sbjct: 388 DSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSA 447

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD-AMVNKDVVTWNAMITAYAQNGL 301
             + +K+ +D +  + + LI MYG+CG    A ++F  A +  DVVTWN +I++YA  G 
Sbjct: 448 HCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGH 507

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           SN A+ L+++M   G+ P+  TLI V+SACA++ AL+ G+ +  Y  + G  +D+     
Sbjct: 508 SNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTA 567

Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                  CG +  A ++F+ M   + V+WN MIS    +G A +AL LF +M  EGG+ +
Sbjct: 568 LIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKM--EGGSIK 625

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           PN VTF+ +LSA  H+GL++EGR++F  M   + L P  +HY+CMVDL  ++GHL EA D
Sbjct: 626 PNGVTFLAILSALCHSGLLEEGRKVFTRMGK-YSLEPNLKHYACMVDLLGKSGHLQEAED 684

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            V  MP + D  + G LL AC+   N ++  R+ +     +  N G Y++ S  +   K 
Sbjct: 685 MVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENEGYYILISNSYGGAKK 744

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGID 558
           WD+  K+R  M+  GV K  G  W  +D
Sbjct: 745 WDEIEKLRETMKNLGVQK--GVGWSAVD 770



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 211/442 (47%), Gaps = 34/442 (7%)

Query: 57  FLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-- 114
           ++  R  +++D   A  +F ++   +  A+  +I G     +     L+   +M RL   
Sbjct: 158 YMYARCGNVRD---AVKVFEEMPERDVVAWTAVISGCVRNGES-GEGLRYLVEMVRLAGD 213

Query: 115 --LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
             ++P++ T      +C  L  LN G  +H  V K+G+ +   V  +L +MY++C   + 
Sbjct: 214 GSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTED 273

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           A  +F E+ E+D+VSW S+I  Y + G   EA+ELF +M E    PDEI +  VL   G+
Sbjct: 274 ACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGN 333

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
            G++  GK     + K     +  +G+ALI MYGK   +  A RVF  +  +D  +WN M
Sbjct: 334 NGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLM 393

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKI-------TLIGVLSACASIGALDLGKWVDK 345
           +  Y + G   + + L+  M+      DK        +L+  +S+C+ +  L LG+    
Sbjct: 394 VVGYCKAGCDVKCLELYREMQL----RDKYEFWCVADSLVSAISSCSRLAELRLGRSAHC 449

Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAH 393
           Y+ +  L  D             CG  D A K+F    +  + V+WN +IS+ A  G ++
Sbjct: 450 YSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSN 509

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
            A+ L+++M  EG    PN  T I V+SAC +   ++ G ++   +    G        +
Sbjct: 510 AAMSLYDQMLIEG--LTPNSTTLITVISACANLVALERGEKIHSYV-KEMGWDYDVSINT 566

Query: 454 CMVDLYARAGHLSEAWDFVERM 475
            ++D+YA+ G L  A    + M
Sbjct: 567 ALIDMYAKCGQLGIARRIFDSM 588



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 229/496 (46%), Gaps = 23/496 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+L F    RP+ + +N +IR    A   +  +L  + +M   G +P  FT P    + A
Sbjct: 64  AALAFSASPRPDAFLWNSLIRTHHCA-SDFVAALSAHRRMLASGARPSPFTAPLAASASA 122

Query: 131 NLLALNHGVSVHSSVFKIGL---DEDD-HVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            L AL  G +VH+   + GL   D D   V+ SL+ MYARCG +  A KVF+E+ ERD+V
Sbjct: 123 ELGALGVGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVV 182

Query: 187 SWNSMISGYSKMGYAKEA----VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           +W ++ISG  + G + E     VE+     +    P+  T+ S L +CG L +L  G+ +
Sbjct: 183 AWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCL 242

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G+VVK  +  +  + SAL  MY KC +   A  +F  +  KDVV+W ++I  Y + GL 
Sbjct: 243 HGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLI 302

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-- 360
            EA+ LF +M  +G+ PD+I +  VLS   + G +  GK      ++R     +  G+  
Sbjct: 303 TEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNAL 362

Query: 361 ---------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS-KEGGAAR 410
                    +D A +VF  +   +  SWN M+      G   + L L+  M  ++     
Sbjct: 363 ISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFW 422

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
               + +  +S+C     +  GR      S    L   S   + ++ +Y R G    A  
Sbjct: 423 CVADSLVSAISSCSRLAELRLGRSAH-CYSIKHLLDEDSSVANVLIGMYGRCGKFDHACK 481

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM-QLLLEIESSNSGNYVISSKIFANLK 529
                  K D +    L+ +     +++ +  +  Q+L+E  + NS   +      ANL 
Sbjct: 482 IFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLV 541

Query: 530 MWDDSAKMRALMREKG 545
             +   K+ + ++E G
Sbjct: 542 ALERGEKIHSYVKEMG 557


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 269/503 (53%), Gaps = 26/503 (5%)

Query: 70  YASLLFHQ-ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFI 127
           YA  LF Q   R + +  N MI+      Q Y  S  LY  + K     PDNFT+  +  
Sbjct: 28  YARKLFDQRPQRDDSFLSNSMIKAYLETRQ-YPDSFALYRDLRKETCFAPDNFTFTTLTK 86

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SC+  + +  G+ +HS +++ G   D +VS  ++ MYA+ GK+  AR  FDE+  R  VS
Sbjct: 87  SCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVS 146

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W ++ISGY + G    A +LF +M     + D +   +++      GD+   + +   + 
Sbjct: 147 WTALISGYIRCGELDLASKLFDQMPH---VKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              +       + +I  Y     +  AR++FDAM  +++V+WN MI  Y QN    E I 
Sbjct: 204 HKTV----ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIT 259

Query: 308 LFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF 357
           LF  M+    ++PD +T++ VL A +  GAL LG+W   +  ++ L           D++
Sbjct: 260 LFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMY 319

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG I+ A ++F++MP     SWNAMI   A NG A  AL LF  M  E    +P+++T
Sbjct: 320 SKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIE---EKPDEIT 376

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            + V++AC H GLV+EGR+ F +M    GL  K EHY CMVDL  RAG L EA D +  M
Sbjct: 377 MLAVITACNHGGLVEEGRKWFHVMRE-MGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM 435

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + + I+L + L AC + K+ + ++R+++  +E+E  N GNYV+   ++A  K WDD  
Sbjct: 436 PFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFG 495

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            ++ +MR+    K  GCS I I+
Sbjct: 496 MVKNVMRKNQAKKEVGCSLIEIN 518



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 9/222 (4%)

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTY 122
           ++KD + A  LF  +   N  ++N MI G     Q     + L+ +M+    L PD+ T 
Sbjct: 219 NIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQP-QEGITLFQEMQATTSLDPDDVTI 277

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             V  + ++  AL+ G   H  V +  LD+   V  +++ MY++CG+++ A+++FDE+ E
Sbjct: 278 LSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPE 337

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KW 241
           + + SWN+MI GY+  G A+ A++LF  M  EE  PDEIT+++V+ +C   G +  G KW
Sbjct: 338 KQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKW 396

Query: 242 VEGFVVKNKMDLNFYMG--SALIDMYGKCGALVPARRVFDAM 281
              F V  +M LN  +     ++D+ G+ G+L  A  +   M
Sbjct: 397 ---FHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM 435


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/548 (30%), Positives = 289/548 (52%), Gaps = 21/548 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           LLS   +  S   V Q+H  ++     + +   N LL      +    A  LF  ++  +
Sbjct: 145 LLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKD 204

Query: 83  EYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
              FN ++ G +   + ++H ++ L+++M+ LG +P  FT+  V  +   +  +  G  V
Sbjct: 205 NVTFNALLTGYSK--EGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQV 262

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           HS V K     +  V+++L+  Y++  ++  ARK+F E+ E D +S+N +I+  +  G  
Sbjct: 263 HSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRV 322

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +E++ELF  ++   F   +    ++L    +  +L +G+ +    +         +G++L
Sbjct: 323 EESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSL 382

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KC     A R+F  + ++  V W A+I+ Y Q GL  + + LF  M  A +  D 
Sbjct: 383 VDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADS 442

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            T   +L ACA++ +L LGK +     + G   ++F           CGSI +AL++F++
Sbjct: 443 ATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQE 502

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           MPV N VSWNA+ISA A NG    AL  FE+M   G   +PN V+F+ +L AC H GLV+
Sbjct: 503 MPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSG--LQPNSVSFLSILCACSHCGLVE 560

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG + F+ M+  + L P+ EHY+ MVD+  R+G   EA   + RMP + DEI+  ++L +
Sbjct: 561 EGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNS 620

Query: 491 CQKQKNTDVSQRVMQLLLEIES-SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
           C+  KN +++ +    L  ++   ++  YV  S I+A    WD   K++  +RE+G+ K 
Sbjct: 621 CRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKV 680

Query: 550 PGCSWIGI 557
           P  SW+ I
Sbjct: 681 PAYSWVEI 688



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 198/414 (47%), Gaps = 15/414 (3%)

Query: 88  VMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147
            M+ G      ++  +  L+  M R G+ PD+ T   +        ++N    VH  V K
Sbjct: 108 TMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVK 167

Query: 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL 207
           +G D    V +SL+  Y +   L  A  +F  + E+D V++N++++GYSK G+  +A+ L
Sbjct: 168 VGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINL 227

Query: 208 FGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
           F +M++  F P E T  +VL +   + D+  G+ V  FVVK     N ++ +AL+D Y K
Sbjct: 228 FFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK 287

Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
              +V AR++F  M   D +++N +IT  A NG   E++ LF  +++   +  +     +
Sbjct: 288 HDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATL 347

Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNE 376
           LS  A+   L++G+ +   A       ++            C    +A ++F D+   + 
Sbjct: 348 LSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSS 407

Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
           V W A+IS     G   + L LF  M +    A  +  T+  +L AC +   +  G++L 
Sbjct: 408 VPWTALISGYVQKGLHEDGLKLFVEMHRAKIGA--DSATYASILRACANLASLTLGKQLH 465

Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
             +  S G +      S +VD+YA+ G + EA    + MP + + +   AL+ A
Sbjct: 466 SRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISA 517



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 22/327 (6%)

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           ++++I  Y + G L +AR +FD + +R +V+W  +I GY++     EA  LF  M     
Sbjct: 76  TNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGM 135

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
           +PD ITL ++L    +   +     V G VVK   D    + ++L+D Y K  +L  A  
Sbjct: 136 VPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACH 195

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F  M  KD VT+NA++T Y++ G +++AI LF +M+  G  P + T   VL+A   +  
Sbjct: 196 LFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDD 255

Query: 337 LDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISA 385
           ++ G+ V  +  +     ++F  +           I +A K+F +MP  + +S+N +I+ 
Sbjct: 256 IEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITC 315

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD--LMSSSF 443
            A+NGR  E+L LF  +       R     F  +LS   ++  ++ GR++    +++ + 
Sbjct: 316 CAWNGRVEESLELFRELQFTRFDRR--QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAI 373

Query: 444 G--LIPKSEHYSCMVDLYARAGHLSEA 468
              L+  S     +VD+YA+     EA
Sbjct: 374 SEVLVGNS-----LVDMYAKCDKFGEA 395



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 161/352 (45%), Gaps = 11/352 (3%)

Query: 10  RHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML----INFIQKPNFLLIRIIDL 65
           R L FT  +        LLS+     + +  +QIH+Q +    I+ +   N L+      
Sbjct: 330 RELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKC 389

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS--LKLYYQMKRLGLKPDNFTYP 123
             F  A+ +F  ++  +   +  +I G     QK  H   LKL+ +M R  +  D+ TY 
Sbjct: 390 DKFGEANRIFADLAHQSSVPWTALISGYV---QKGLHEDGLKLFVEMHRAKIGADSATYA 446

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            +  +CANL +L  G  +HS + + G   +     +L+ MYA+CG +  A ++F E+  R
Sbjct: 447 SILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR 506

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWV 242
           + VSWN++IS Y++ G    A+  F +M      P+ ++ +S+L +C   G +  G ++ 
Sbjct: 507 NSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYF 566

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQNGL 301
                  K++      ++++DM  + G    A ++   M    D + W++++ +   +  
Sbjct: 567 NSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKN 626

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
              AI   +++       D    + + +  A+ G  D    V K   +RG+R
Sbjct: 627 QELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIR 678



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 125/272 (45%), Gaps = 22/272 (8%)

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
           GDLG     K  +    KN +  N      +I  Y K G L  AR +FD+MV + VVTW 
Sbjct: 56  GDLG--AARKLFDEMPHKNVISTN-----TMIMGYLKSGNLSTARSLFDSMVQRSVVTWT 108

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
            +I  YAQ+    EA  LF  M   G+ PD ITL  +LS      +++    V  +  + 
Sbjct: 109 MLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKV 168

Query: 351 GLRHDIF-CGSIDD----------ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
           G    +  C S+ D          A  +F+ M   + V++NA+++  +  G  H+A+ LF
Sbjct: 169 GYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLF 228

Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
            +M   G   RP++ TF  VL+A +    ++ G+++   +      +      + ++D Y
Sbjct: 229 FKMQDLG--FRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKC-NFVWNVFVANALLDFY 285

Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           ++   + EA      MPE VD I    L+  C
Sbjct: 286 SKHDRIVEARKLFYEMPE-VDGISYNVLITCC 316


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 299/556 (53%), Gaps = 21/556 (3%)

Query: 22  LLREKLLSLLKKCPSTKTVQ---QIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLL 74
           L+     S L  C   + V    Q+H  ++ + F   P     LL      K    A  +
Sbjct: 254 LVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENV 313

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F Q+S      +N MI       + Y   LK+Y QMK L + PD+ T   V  SC  + +
Sbjct: 314 FDQVSVKKTELWNAMISAYVGNGRSYD-GLKIYKQMKVLQIPPDSLTATNVLSSCCLVGS 372

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
            + G  +H+ + K  +  +  +  +L+TMY++CG  D A  +F+ I+ RD+V+W SMISG
Sbjct: 373 YDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISG 432

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           + +     EA+E +  M      PD   + SV+ +C  L ++ LG  + G  +K+ ++ +
Sbjct: 433 FCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQD 492

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
            ++ S+L+DMY K      +  VF  M  K++V WN++I+ Y +NGL + +I LF++M  
Sbjct: 493 VFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQ 552

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDD 363
            G+ PD +++  VL + +S+  L  GK V  Y  ++ +  D           I CG +  
Sbjct: 553 YGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKY 612

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  +F++M  TN V+WN MI+    +G   +A+ LF+ M   G A  P+D+TFI +L++C
Sbjct: 613 AQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIA--PDDITFISLLTSC 670

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H G ++EG +LF LM+   G+ P+ EHY  +VDL  RAG L +A+ FV+ +P + D  +
Sbjct: 671 NHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSI 730

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             +LL +C+   N ++ +     LL+IE S   NYV    ++   ++ D +A +RA M+E
Sbjct: 731 WLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKE 790

Query: 544 KGVSKTPGCSWIGIDD 559
           KG+ KTPGCSWI + +
Sbjct: 791 KGLKKTPGCSWIEVGN 806



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 17/347 (4%)

Query: 74  LFHQIS-RPNEYAFNVMIRGL--TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           LF ++  + N  A+NVMI G      W+   +SL++Y   K   +K  + ++     +C 
Sbjct: 211 LFKELEDKGNVVAWNVMIGGFGENGLWE---NSLEVYLLAKNENVKLVSASFTSTLSACC 267

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
               ++ G+ VH  + K+G + D +V  SL+TMY++C  ++ A  VFD++  +    WN+
Sbjct: 268 QGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNA 327

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MIS Y   G + + ++++ +M+  +  PD +T  +VL SC  +G    G+ +   +VK  
Sbjct: 328 MISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRP 387

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  N  + SAL+ MY KCG    A  +F+ +  +DVV W +MI+ + QN    EA+  +N
Sbjct: 388 IQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYN 447

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--IDDALK-- 366
            M   G  PD   +  V+SAC  +  ++LG  +   A + GL  D+F  S  +D   K  
Sbjct: 448 SMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFN 507

Query: 367 -------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
                  VF DMP+ N V+WN++IS    NG    ++ LF +M++ G
Sbjct: 508 FPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYG 554



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 203/419 (48%), Gaps = 34/419 (8%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL-DEDDHVS 157
           +Y  +L+ Y    R  L    FTYP +  +C  L  L +G ++HS++   G    D +++
Sbjct: 32  QYVDALQFY---SRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYIT 88

Query: 158 HSLITMYARCGKLDSARKVFDEIRE-----RDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
            SLI  Y +CG   +A KVFD++ E     +D+  WNS+++GY + G+ KE +  F RM+
Sbjct: 89  TSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQ 148

Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
                PD  +L  +LG+    G L   K + G+ V+     + ++ S LI MY  CG  +
Sbjct: 149 LFGVRPDAYSLCILLGASD--GHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPL 206

Query: 273 PARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
            A R+F  + +K +VV WN MI  + +NGL   ++ ++   K   V     +    LSAC
Sbjct: 207 DAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSAC 266

Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
                +  G  V     + G  +D +           C  ++DA  VF+ + V     WN
Sbjct: 267 CQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWN 326

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           AMISA   NGR+++ L ++++M        P+ +T   VLS+C   G  D GR    L+ 
Sbjct: 327 AMISAYVGNGRSYDGLKIYKQMKVL--QIPPDSLTATNVLSSCCLVGSYDFGR----LIH 380

Query: 441 SSFGLIPKSEHY---SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQK 495
           +     P   +    S ++ +Y++ G+  +A      +  + D +  G+++ G CQ +K
Sbjct: 381 AELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR-DVVAWGSMISGFCQNRK 438


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 261/472 (55%), Gaps = 19/472 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +LK   Q+      P   T+  +  SC    +L+ GV VH  +   GLD+D +++  LI 
Sbjct: 58  NLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLIN 117

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MY   G +D A KVFDE RE+ +  WN++    +     ++ + L+G+M       +  T
Sbjct: 118 MYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFT 177

Query: 223 LVSVLGSCG----DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
              VL +C      +  L  GK +   ++++  + + ++ + L+D+Y + G +  A  VF
Sbjct: 178 YTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVF 237

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACASIGA 336
            AM +K++V+W+AMI  YA+N +  +A+ LF  M     +  P+ IT++ VL ACAS+ A
Sbjct: 238 GAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAA 297

Query: 337 LDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L+ GK V  Y  +RGL   +            CG I    +VF+ M   + +SWN++IS 
Sbjct: 298 LEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISI 357

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
              +G   +A+ +FE M   G    P+ +TFI VL AC HAGLV+E + LF+ M + + +
Sbjct: 358 YGMHGLGKKAIQIFENMINRG--VSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRI 415

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P+ EHY+CMVD+  RA  L EA + ++ M  K    V G+LLG+C+   N ++++R   
Sbjct: 416 HPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASA 475

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +L E+E  N+GNYV+ S I+A  +MW+D  ++R  +  +G+ K P CSWI +
Sbjct: 476 MLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEV 527


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 270/533 (50%), Gaps = 46/533 (8%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
           +  A  LF  + RP        + GL+     +   +++   + R G    +   P V  
Sbjct: 124 YRAARHLFDVVPRPTAALCCAFLSGLSK-LSLHQEFIEVVSSLHRRGGAIPSGCIPLVLK 182

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-------------- 173
           SCA   A   G   H      G+  D  V  +L+  YA+ G +DSA              
Sbjct: 183 SCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIP 242

Query: 174 -----------------RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                            R++FD +  R   SWNSMI+ Y+  G  +EA+ LF +M  E  
Sbjct: 243 MNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGA 302

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            P+ IT+ +V   C   GDL  G+    ++ +  +  N  + +AL++MY KC A+  AR 
Sbjct: 303 SPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARH 361

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
            FD M  +DVV W+ MI  Y+QNG  +E++ LF RMK     P+++TL+GVLSACA +G+
Sbjct: 362 EFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGS 421

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
            +LG+ +  Y   + L    +           CG +  A  VF  M     V+WN+MI  
Sbjct: 422 DELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRG 481

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
           LA NG A +A+ L+ +M  +G   +PN+VTF+ +L+AC HAGLVD+G   F+ M     +
Sbjct: 482 LALNGFAEDAIALYRKMVGDG--IQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHV 539

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505
            P+ EH +C+VDL  ++G L EA+ F+  M  + + ++   LL AC+   + ++++    
Sbjct: 540 SPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAG 599

Query: 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            L+ +E +NS  YV+ S I+A+  +W D  ++R LMR K + K    SWI +D
Sbjct: 600 KLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELD 652



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 202/389 (51%), Gaps = 20/389 (5%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D   A  LF  + R    ++N MI       + +  +L L+ QM R G  P+  T   VF
Sbjct: 255 DVEEARRLFDSMPRRTSASWNSMIACYAHGGE-FREALTLFDQMLREGASPNAITITTVF 313

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             CA    L+ G    + + +  L ++  V  +L+ MY +C  +D AR  FD +  RD+V
Sbjct: 314 SICAKTGDLDTGRRARAWIREEDL-QNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVV 372

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +W++MI+GYS+ G   E++ELF RM+     P+E+TLV VL +C  LG   LG+ +  ++
Sbjct: 373 AWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYI 432

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
               + L  Y+GSALIDMY KCG +  AR VF+ M  K VVTWN+MI   A NG + +AI
Sbjct: 433 ESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAI 492

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLG----------KWVDKYASQRGLRHDI 356
            L+ +M   G+ P+++T + +L+AC   G +D G          + V           D+
Sbjct: 493 ALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDL 552

Query: 357 FC--GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
            C  G + +A K   DM V  N V W+ ++SA     RAH  + L +  + +  A  PN+
Sbjct: 553 LCKSGRLWEAYKFICDMEVEPNAVIWSTLLSAC----RAHADVELAKLAAGKLVALEPNN 608

Query: 414 VTFIGVLSAC-VHAGLVDEGRRLFDLMSS 441
            +   +LS     AGL  + R + DLM S
Sbjct: 609 SSIYVLLSNIYADAGLWGDVREIRDLMRS 637


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 264/506 (52%), Gaps = 50/506 (9%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV-FKIGLDEDDHVSH 158
           +  +L  Y +M   G++PDNFTYP V  +C   L L+ G  VH S+    G   + +V +
Sbjct: 123 HGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHN 182

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE---- 214
           SL++MY + G+LD+AR++F+++ ERD VSWN +IS Y+  G  KEA ELF  MR      
Sbjct: 183 SLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEV 242

Query: 215 ----------------------EFLP---------DEITLVSVLGSCGDLGDLVLGKWVE 243
                                 E L          D + ++  LG+C  +G + LG  + 
Sbjct: 243 NIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIH 302

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +++  D    + +ALI MY +C  L  A  +F ++  K + TWN+M++ Y     S 
Sbjct: 303 ASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSE 362

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------ 357
           EA  LF  M ++G+ P+ +T+  +L  CA +  L  GK    Y  +R    D        
Sbjct: 363 EASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSL 422

Query: 358 ------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                  G +  A +VF+ +   ++V++ ++I+     G    AL LF+ M K     +P
Sbjct: 423 VEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKH--RIKP 480

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           + VT + VLSAC H+GLV EG  LF+ MS+ +G++P  EH+SCMVDL+ RAG L++A   
Sbjct: 481 DQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKV 540

Query: 472 VERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531
           +  MP +    +   L+GAC+   NT++ +   + LLE++  N G YV+ + + A    W
Sbjct: 541 ITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRW 600

Query: 532 DDSAKMRALMREKGVSKTPGCSWIGI 557
              A++R  MR+ GV K PGC+W+ +
Sbjct: 601 SKLAEVRTYMRDLGVRKAPGCTWVDV 626



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 162/315 (51%), Gaps = 14/315 (4%)

Query: 90  IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           I G     + +  +L+L  QM+R  +  D         +C+++ A+  G  +H+S  +  
Sbjct: 250 IAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSC 309

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
            D  D+V ++LITMY+RC  L  A  +F  I+ + L +WNSM+SGY+ M  ++EA  LF 
Sbjct: 310 FDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFR 369

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMGSALIDMYGKC 268
            M      P+ +T+ S+L  C  + +L  GK    ++++ +  +    + ++L++MY + 
Sbjct: 370 EMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARS 429

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G ++ A+RVFD++  +D VT+ ++I  Y   G    A+ LF+ M    + PD++T++ VL
Sbjct: 430 GKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVL 489

Query: 329 SACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNE 376
           SAC+  G +  G     K    Y     + H     D+F   G ++ A KV   MP    
Sbjct: 490 SACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPT 549

Query: 377 VS-WNAMISALAFNG 390
            + W  ++ A   +G
Sbjct: 550 TAMWATLVGACRIHG 564



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 167/391 (42%), Gaps = 49/391 (12%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +  SC NL +L  G  +H+    +G +    +   L+T Y+    L  A  +       +
Sbjct: 47  LLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVN 106

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-E 243
            + WN +IS Y   G   EA+  +  M  +   PD  T  SVL +CG+  DL  G+ V E
Sbjct: 107 PLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHE 166

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
                     N Y+ ++L+ MYGK G L  ARR+F+ M  +D V+WN +I+ YA  GL  
Sbjct: 167 SINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWK 226

Query: 304 EAIMLFNRMKYAG-----------------------------------VNPDKITLIGVL 328
           EA  LF  M+ AG                                   ++ D + +I  L
Sbjct: 227 EAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGL 286

Query: 329 SACASIGALDLGKWV---------DKYASQRGLRHDIF--CGSIDDALKVFEDMPVTNEV 377
            AC+ IGA+ LG  +         D + + R     ++  C  +  A  +F+ +   +  
Sbjct: 287 GACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLT 346

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           +WN+M+S      R+ EA  LF  M   G    PN VT   +L  C     + +G+    
Sbjct: 347 TWNSMLSGYTHMDRSEEASFLFREMLFSG--IEPNYVTIASILPHCARVANLQQGKEFHC 404

Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            +    G       ++ +V++YAR+G +  A
Sbjct: 405 YIMRREGFEDYLLLWNSLVEMYARSGKVLSA 435



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 35/288 (12%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+      KD  +A +LF  I   +   +N M+ G T   +    S  L+ +M   G+
Sbjct: 318 NALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASF-LFREMLFSGI 376

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKI-GLDEDDHVSHSLITMYARCGKLDSAR 174
           +P+  T   +   CA +  L  G   H  + +  G ++   + +SL+ MYAR GK+ SA+
Sbjct: 377 EPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAK 436

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           +VFD +R RD V++ S+I+GY   G  K A++LF  M +    PD++T+V+VL +C   G
Sbjct: 437 RVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSG 496

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            +      EG V+  KM            +YG    +VPA   F  MV+           
Sbjct: 497 LV-----TEGNVLFEKMS----------TLYG----IVPAVEHFSCMVD----------- 526

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            + + GL N+A  +   M Y        TL+G   AC   G  ++G+W
Sbjct: 527 LFGRAGLLNKAKKVITSMPYRPTTAMWATLVG---ACRIHGNTEIGEW 571



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 20/220 (9%)

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           ++ S+L SC +L  L  GK +    +    + +  +   L+  Y     L  A  +    
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTI---T 99

Query: 282 VNKDVVT---WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           VN D+V    WN +I++Y  NGL  EA+  +  M + GV PD  T   VL AC     LD
Sbjct: 100 VNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLD 159

Query: 339 LGKWV-DKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISAL 386
            G+ V +   +  G R +++            G +D A ++F  MP  + VSWN +IS  
Sbjct: 160 FGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNY 219

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           A  G   EA  LFE M   G  A  N +T+  +   CV  
Sbjct: 220 ASRGLWKEAFELFEEMRLAG--AEVNIITWNTIAGGCVQT 257


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 271/497 (54%), Gaps = 14/497 (2%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F  ++  N  ++  +I GL  A       L  + +M R  +  D+ T+     + A   
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLD-GLSYFSEMWRSKVGYDSHTFAVALKASAESG 266

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L++G ++H+   K G +E  +V ++L TMY++C K D   ++F ++   D+VSW ++I 
Sbjct: 267 LLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIM 326

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y +MG  + A++ F RMR+ +  P+E T  SV+ +C +L     G+ + G  ++  +  
Sbjct: 327 TYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVD 386

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + +++I +Y KCG L  A  VFD M  KD+++W+ +I+ Y Q   + EA    + M 
Sbjct: 387 ALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMS 446

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSID 362
             G  P++  L  VLS C S+  L+ GK V  YA   GL H+              G++ 
Sbjct: 447 REGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQ 506

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +A K+F+ +   + VSW AMI+  A +G + EA+ LFE +S  G    P+ VTFIG+L+A
Sbjct: 507 EASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVG--LMPDYVTFIGILTA 564

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C HAGLVD G   + LM++ + + P  EHY C++DL  RAG LSEA   V  MP   D++
Sbjct: 565 CNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDV 624

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           V   LL AC+   + D +    + +L +  +++G ++  + I++     +++A +R LM+
Sbjct: 625 VWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMK 684

Query: 543 EKGVSKTPGCSWIGIDD 559
            KGV K PG SWI  +D
Sbjct: 685 SKGVIKEPGWSWINSND 701



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 200/386 (51%), Gaps = 17/386 (4%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
           +Y   LF ++S P+  ++  +I        +   +L  + +M++  + P+ +T+  V  +
Sbjct: 304 DYVMRLFGKMSTPDVVSWTNLIMTYVQMGDE-ERALDAFKRMRKSDVSPNEYTFASVISA 362

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           CANL     G  +H    ++GL +   VS+S+IT+Y++CG L  A  VFD +  +D++SW
Sbjct: 363 CANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISW 422

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           +++IS Y +  +AKEA      M  E   P+E  L SVL  CG +  L  GK V  + + 
Sbjct: 423 STIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALC 482

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
             +D    + SALI MY + G L  A ++FD++ N D+V+W AMI  YA++G S EAI L
Sbjct: 483 IGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISL 542

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKW-----VDKYASQRGLRH-----DIFC 358
           F  +   G+ PD +T IG+L+AC   G +DLG +      ++Y       H     D+ C
Sbjct: 543 FENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLC 602

Query: 359 --GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             G + +A  +  +MP   ++V W+ ++ A   +G    A+   E+M +    +    +T
Sbjct: 603 RAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHIT 662

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSS 441
              + SA   +G  +E   +  LM S
Sbjct: 663 LANIYSA---SGRREEAAHVRKLMKS 685



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 206/443 (46%), Gaps = 16/443 (3%)

Query: 38  KTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAW 97
           K  Q+  T   +  + + N  L +++ L     A  +F+++S  +E ++  +I G   A 
Sbjct: 70  KPEQRAPTAYYVPNMPELNSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNA- 128

Query: 98  QKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
              + +L L+  M    GL+ D F       +CA  + +  G  +H    K GL     V
Sbjct: 129 ANSNEALILFSNMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFV 188

Query: 157 SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
           S +L+ MY + GK +    VF+ +  R++VSW ++I G    G + + +  F  M   + 
Sbjct: 189 SSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKV 248

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D  T    L +  + G L  GK +    +K   +   Y+ + L  MY KC       R
Sbjct: 249 GYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMR 308

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           +F  M   DVV+W  +I  Y Q G    A+  F RM+ + V+P++ T   V+SACA++  
Sbjct: 309 LFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAI 368

Query: 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISA 385
              G+ +  +A + GL   +            CG + +A  VF+ M   + +SW+ +IS 
Sbjct: 369 TKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISV 428

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
                 A EA      MS+EG   +PN+     VLS C    L++ G+++    +   GL
Sbjct: 429 YCQGSHAKEAFNYLSWMSREG--PKPNEFALASVLSVCGSMALLEPGKQVH-AYALCIGL 485

Query: 446 IPKSEHYSCMVDLYARAGHLSEA 468
             ++  +S ++ +Y+R+G+L EA
Sbjct: 486 DHETMVHSALISMYSRSGNLQEA 508


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 276/489 (56%), Gaps = 22/489 (4%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           A+N  +R L+   Q Y  +L LY  M R    P+ FT+PF+  SCA L        +H+ 
Sbjct: 21  AWNNQLRQLSKQRQ-YREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAH 79

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V + G   D +   SLI  YA+C     ARKVFDE+     + +N+MISGYS       A
Sbjct: 80  VIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEM-PNPTICYNAMISGYSFNSKPLHA 138

Query: 205 VELFGRMREEE-------FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
           V LF +MR EE          + +TL+S++  C     L +G  + G  V+     +  +
Sbjct: 139 VCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAV 198

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++L+ MY KCG +  AR+VFD M+ +D++TWNAMI+ YAQNG +   + +++ MK +GV
Sbjct: 199 ANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGV 258

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
           + D +TL+GV+SACA++GA  +G+ V++   +RG   + F           CG++  A +
Sbjct: 259 SADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRARE 318

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF+     + VSW A+I     +G    AL LF+ M +   A RP+   F+ VLSAC HA
Sbjct: 319 VFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVE--SAVRPDKTVFVSVLSACSHA 376

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GL D G   F  M   +GL P  EHYSC+VDL  RAG L EA + ++ M  K D  V GA
Sbjct: 377 GLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGA 436

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LLGAC+  KN ++++   Q ++E+E +N G YV+ S I+ +    +  +++R +MRE+ +
Sbjct: 437 LLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKL 496

Query: 547 SKTPGCSWI 555
            K PG S++
Sbjct: 497 RKDPGYSYV 505



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 209/422 (49%), Gaps = 39/422 (9%)

Query: 30  LLKKCPSTK---TVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR------ 80
           LLK C          Q+H  ++    Q   +    +I+     YA    H  +R      
Sbjct: 60  LLKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLIN----TYAKCSLHHHARKVFDEM 115

Query: 81  PN-EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL---GLKPDNFTYPFVFIS----CANL 132
           PN    +N MI G +    K  H++ L+ +M+R    GL  D        +S    C+  
Sbjct: 116 PNPTICYNAMISGYSFN-SKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVA 174

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
             L  GV +H    + G   D  V++SL+TMY +CG+++ ARKVFDE+  RDL++WN+MI
Sbjct: 175 THLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMI 234

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           SGY++ G+A+  +E++  M+      D +TL+ V+ +C +LG   +G+ VE  + +    
Sbjct: 235 SGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFG 294

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            N ++ +AL++MY +CG L  AR VFD    K VV+W A+I  Y  +G    A+ LF+ M
Sbjct: 295 CNPFLRNALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEM 354

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGS 360
             + V PDK   + VLSAC+  G  D G     +   KY  Q G  H     D+    G 
Sbjct: 355 VESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGR 414

Query: 361 IDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +++A+ + + M V  +   W A++ A   +  A  A L F+ + +      P ++ +  +
Sbjct: 415 LEEAVNLIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVE----LEPTNIGYYVL 470

Query: 420 LS 421
           LS
Sbjct: 471 LS 472


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 182/551 (33%), Positives = 292/551 (52%), Gaps = 24/551 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +L+   K  S    QQ+H   L       +   N L+     L+ F +A  +F  +S  +
Sbjct: 321 MLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERD 380

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL---LALNHGV 139
             ++N +I G+     +   ++ L+ Q+ R GLKPD +T   V  + ++L   L+L+  V
Sbjct: 381 LISWNSVIAGIAQNGLEV-EAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQV 439

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+   KI    D  VS +LI  Y+R   +  A  +F E    DLV+WN+M++GY++  
Sbjct: 440 HVHA--IKINNVSDSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSH 496

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              + ++LF  M ++    D+ TL +V  +CG L  +  GK V  + +K+  DL+ ++ S
Sbjct: 497 DGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS 556

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            ++DMY KCG +  A+  FD++   D V W  MI+   +NG    A  +F++M+  GV P
Sbjct: 557 GILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLP 616

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           D+ T+  +  A + + AL+ G+ +   A +    +D F           CGSIDDA  +F
Sbjct: 617 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF 676

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + + + N  +WNAM+  LA +G   E L LF++M   G   +P+ VTFIGVLSAC H+GL
Sbjct: 677 KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLG--IKPDKVTFIGVLSACSHSGL 734

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V E  +    M   +G+ P+ EHYSC+ D   RAG + +A + +E M  +    +   LL
Sbjct: 735 VSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLL 794

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
            AC+ Q +T+  +RV   LLE+E  +S  YV+ S ++A    WD+    R +M+   V K
Sbjct: 795 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 854

Query: 549 TPGCSWIGIDD 559
            PG SWI + +
Sbjct: 855 DPGFSWIEVKN 865



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 196/391 (50%), Gaps = 20/391 (5%)

Query: 99  KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
           +YS  LK +  M    ++ D  T+  +  +   + +L  G  VH    K+GLD    VS+
Sbjct: 295 QYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSN 354

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           SLI MY +  K   AR VFD + ERDL+SWNS+I+G ++ G   EAV LF ++      P
Sbjct: 355 SLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKP 414

Query: 219 DEITLVSVLGSCGDLGD-LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           D+ T+ SVL +   L + L L K V    +K     + ++ +ALID Y +   +  A  +
Sbjct: 415 DQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEIL 474

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+   N D+V WNAM+  Y Q+   ++ + LF  M   G   D  TL  V   C  + A+
Sbjct: 475 FERH-NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAI 533

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           + GK V  YA + G   D++           CG +  A   F+ +PV ++V+W  MIS  
Sbjct: 534 NQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC 593

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
             NG    A  +F +M   G       +  +   S+C+ A  +++GR++    +++  L 
Sbjct: 594 IENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQIH---ANALKLN 648

Query: 447 PKSEHY--SCMVDLYARAGHLSEAWDFVERM 475
             ++ +  + +VD+YA+ G + +A+   +R+
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 153/320 (47%), Gaps = 17/320 (5%)

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           +++  N  +S Y   G     ++ F  M E +   D++T + +L +   +  L LG+ V 
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
              +K  +DL   + ++LI+MY K      AR VFD M  +D+++WN++I   AQNGL  
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIG-ALDLGKWVDKYASQRGLRHDIFCGS-- 360
           EA+ LF ++   G+ PD+ T+  VL A +S+   L L K V  +A +     D F  +  
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTAL 458

Query: 361 ---------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
                    + +A  +FE     + V+WNAM++    +   H+ L LF  M K+G   R 
Sbjct: 459 IDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG--ERS 515

Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471
           +D T   V   C     +++G+++      S G        S ++D+Y + G +S A   
Sbjct: 516 DDFTLATVFKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDMSAAQFA 574

Query: 472 VERMPEKVDEIVLGALLGAC 491
            + +P   D++    ++  C
Sbjct: 575 FDSIPVP-DDVAWTTMISGC 593



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G   H+ +     + +  + ++LI+MY++CG L  AR+VFD++ +RDLVSWNS+++ Y++
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 198 MGYA-----KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
                    ++A  LF  +R++      +TL  +L  C   G +   +   G+  K  +D
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLD 177

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            + ++  AL+++Y K G +   + +F+ M  +DVV WN M+ AY + G   EAI L +  
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 313 KYAGVNPDKITL 324
             +G+NP++ITL
Sbjct: 238 HSSGLNPNEITL 249



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 155/349 (44%), Gaps = 51/349 (14%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S H    KIGLD D+ V+ +L+ +Y + GK+   + +F+E+  RD+V WN M+  Y +MG
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + +EA++L          P+EITL  +    GD  D      V+ F   N          
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSD---AGQVKSFANGN---------- 272

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                              DA    +++  N  ++ Y  +G  +  +  F  M  + V  
Sbjct: 273 -------------------DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVEC 313

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFCG--SIDDALKVF 368
           D++T I +L+    + +L LG+ V   A + GL           +++C       A  VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           ++M   + +SWN++I+ +A NG   EA+ LF ++ + G   +P+  T   VL A   A  
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG--LKPDQYTMTSVLKA---ASS 428

Query: 429 VDEGRRL---FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           + EG  L     + +     +  S   + ++D Y+R   + EA    ER
Sbjct: 429 LPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER 477



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 18/198 (9%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           DL+LGK     ++  + +   ++ + LI MY KCG+L  ARRVFD M ++D+V+WN+++ 
Sbjct: 54  DLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILA 113

Query: 295 AYAQNGLS-----NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           AYAQ+         +A +LF  ++   V   ++TL  +L  C   G +   +    YA +
Sbjct: 114 AYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACK 173

Query: 350 RGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            GL  D F            G + +   +FE+MP  + V WN M+ A    G   EA+ L
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 233

Query: 399 FERMSKEGGAARPNDVTF 416
                  G    PN++T 
Sbjct: 234 SSAFHSSG--LNPNEITL 249


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 255/471 (54%), Gaps = 17/471 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           SL L+ +M R G+ P+ FT+     +C  L AL  G+ +H    KIG +    V +SL+ 
Sbjct: 454 SLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVD 513

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF--LPDE 220
           MY++CG+++ A KVF  +  R L+SWN+MI+GY   GY   A+  FG M+E +    PDE
Sbjct: 514 MYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDE 573

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYMGSALIDMYGKCGALVPARRVF 278
            TL S+L +C   G +  GK + GF+V++      +  +  +L+D+Y KCG L  AR+ F
Sbjct: 574 FTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAF 633

Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
           D +  K +++W+++I  YAQ G   EA+ LF R++      D   L  ++   A    L 
Sbjct: 634 DQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQ 693

Query: 339 LGKWVDKYASQ--RGLRHDIF---------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            GK +     +   GL   +          CG +D+A K F +M + + +SW  MI+   
Sbjct: 694 QGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYG 753

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            +G   +A+ +F +M +      P++V ++ VLSAC H+G++ EG  LF  +  + G+ P
Sbjct: 754 KHGLGKKAVSIFNKMLRHN--IEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKP 811

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           + EHY+C+VDL  RAG L EA   V+ MP K +  +   LL  C+   + ++ + V ++L
Sbjct: 812 RVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKIL 871

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L I+  N  NYV+ S ++     W++    R L   KG+ K  G SW+ I+
Sbjct: 872 LRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIE 922



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 200/404 (49%), Gaps = 33/404 (8%)

Query: 69  NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK--PDNFTYPFVF 126
           N A  +F  +   +  ++N MI G   A    S +L  +  M+   +K  PD FT   + 
Sbjct: 522 NEAEKVFRWMVGRSLISWNAMIAGYVHAGYG-SRALATFGMMQEAKIKERPDEFTLTSLL 580

Query: 127 ISCANLLALNHGVSVHSSVFKIGLD--EDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
            +C++   +  G  +H  + + G        ++ SL+ +Y +CG L SARK FD+I+E+ 
Sbjct: 581 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKT 640

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           ++SW+S+I GY++ G   EA+ LF R++E     D   L S++G   D   L  GK ++ 
Sbjct: 641 MISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQA 700

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
            VVK    L   + ++L+DMY KCG +  A + F  M  KDV++W  MIT Y ++GL  +
Sbjct: 701 LVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKK 760

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364
           A+ +FN+M    + PD++  + VLSAC+  G +  G+             ++F       
Sbjct: 761 AVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGE-------------ELFS------ 801

Query: 365 LKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
            K+ E   +   V  +  ++  L   GR  EA  L + M       +PN   +  +LS C
Sbjct: 802 -KLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTM-----PIKPNVGIWQTLLSLC 855

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
              G ++ G+ +  ++    G  P +  Y  M +LY +AG+ +E
Sbjct: 856 RVHGDIELGKEVGKILLRIDGKNPAN--YVMMSNLYGQAGYWNE 897



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 169/328 (51%), Gaps = 18/328 (5%)

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
            S+ LI MY +C +   A KVFD + ER++VSW +++SG+   G    ++ LF  M  + 
Sbjct: 406 TSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQG 465

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             P+E T  + L +CG L  L  G  + GF +K   ++   +G++L+DMY KCG +  A 
Sbjct: 466 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 525

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN--PDKITLIGVLSACAS 333
           +VF  MV + +++WNAMI  Y   G  + A+  F  M+ A +   PD+ TL  +L AC+S
Sbjct: 526 KVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSS 585

Query: 334 IGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFEDMPVTNEVSWN 380
            G +  GK +  +  + G              D++  CG++  A K F+ +     +SW+
Sbjct: 586 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWS 645

Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
           ++I   A  G   EA+ LF+R+ +   +++ +      ++       L+ +G+++  L+ 
Sbjct: 646 SLILGYAQEGDFVEAMGLFKRLQEL--SSQIDSFVLSSIIGVFADFALLQQGKQMQALVV 703

Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEA 468
                +  S   S +VD+Y + G + EA
Sbjct: 704 KLPSGLETSVSNS-LVDMYLKCGLVDEA 730



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 22/306 (7%)

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
           LN    + LIDMY KC   + A +VFD+M  ++VV+W A+++ +  NG  N ++ LF  M
Sbjct: 402 LNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEM 461

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSI 361
              G+ P++ T    L AC  + AL+ G  +  +  + G            D++  CG I
Sbjct: 462 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 521

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           ++A KVF  M   + +SWNAMI+     G    AL  F  M +     RP++ T   +L 
Sbjct: 522 NEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLK 581

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPEKVD 480
           AC   G++  G+++   +  S    P S   +  +VDLY + G+L  A    +++ EK  
Sbjct: 582 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTM 641

Query: 481 EIVLGALLGACQKQKNTD---VSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSA 535
                 +LG  Q+    +   + +R+ +L  +I+S     +V+SS I  FA+  +     
Sbjct: 642 ISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDS-----FVLSSIIGVFADFALLQQGK 696

Query: 536 KMRALM 541
           +M+AL+
Sbjct: 697 QMQALV 702


>gi|225425734|ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 294/548 (53%), Gaps = 18/548 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII--DLKDFNYASLLFHQISRPN 82
           + L+SLL+ C  T  + Q+H  M+   +    F L +++   ++D +YA+ +F+QI  PN
Sbjct: 32  QSLISLLESCTQTSEICQVHGSMVKTGLVNVPFTLSKLLASSIQDTDYAASIFNQIPSPN 91

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
            + FN M+RG + +      +  ++  ++   +  D F++     +CA  LA   G  +H
Sbjct: 92  LFMFNTMLRGYSISHHP-KQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIH 150

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSKMGYA 201
             V + G     +V ++L+  Y  CG++  A ++FDEI  + DLVSWN+++ GY ++ + 
Sbjct: 151 GVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHP 210

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
                LFG M  +       T+ SVL + GDLG+++ G  + G  +K     +  + +AL
Sbjct: 211 TMVTCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDLNVATAL 270

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           IDMY   G +    ++F  +  KDVV WN +I  YA++ L  E++ L   MK   V P+ 
Sbjct: 271 IDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNS 330

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
            TL+G+LSACA+ GA  +G  +  Y  +  +  D             CG ++ A+ VFE 
Sbjct: 331 STLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVFER 390

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M + +  SW AMIS    +G+A  A+++F RM  EG   RPN+VTF+ VL+AC H G+V 
Sbjct: 391 MEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEG--YRPNEVTFLAVLNACSHGGMVV 448

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG    + M   +G  PK EHY CM+DL  RAG L EA + ++ +P + D     ALL A
Sbjct: 449 EGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEGDATGWRALLAA 508

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   N D+ + V ++LLEI   +  + ++ S  +A      D  +M+ +  EK + K  
Sbjct: 509 CRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGRLPDYTRMQEIKEEK-MMKEA 567

Query: 551 GCSWIGID 558
           GCS I +D
Sbjct: 568 GCSVIEMD 575


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 256/452 (56%), Gaps = 12/452 (2%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +PD+ T+     +CA L  L  G SV    F  G  +D  V  SL+ +YAR G +  A K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF  +  RD V+W++M++G+   G   +A++++ RMRE+    DE+ ++ V+ +C    +
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G  V G ++++ M ++    ++L+DMY K G L  A RVF  MV+++ V+W+AMI+ 
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           +AQNG S+EA+ LF  M+ +G+ PD   L+  L AC++IG L LG+ V  +  +R   + 
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 356 IF----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           I           CGS+  A  +F  +   + + WNAMI+    +GR  +AL LF+ M++ 
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   RP+  TF  +LSA  H+GLV+EG+  F  M + F + P  +HY C+VDL AR+G +
Sbjct: 405 G--MRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLV 462

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA D +  M  +    +  ALL  C   K  ++ + +   +LE++  + G   + S ++
Sbjct: 463 EEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           A  K WD   ++R LM++ G  K PGCS I I
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEI 554



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 28/365 (7%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++ R +   ++ M+ G  +A Q    ++++Y +M+  G+K D      V  +C    
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLD-AIQMYRRMREDGVKGDEVVMIGVIQACTAAR 223

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G SVH  + + G+  D   + SL+ MYA+ G LD A +VF  +  R+ VSW++MIS
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G+++ G + EA+ LF  M+     PD   LVS L +C ++G L LG+ V GF+V+ + D 
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDF 342

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  +G+A IDMY KCG+L  A+ +F+ + ++D++ WNAMI     +G   +A+ LF  M 
Sbjct: 343 NCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN 402

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372
             G+ PD  T   +LSA +  G ++ GK W  +  +                   F+  P
Sbjct: 403 ETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNH------------------FKITP 444

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
              E  +  ++  LA +G   EA  L   M  E     P    ++ +LS C++   ++ G
Sbjct: 445 A--EKHYVCLVDLLARSGLVEEASDLLTSMKAE-----PTVAIWVALLSGCLNNKKLELG 497

Query: 433 RRLFD 437
             + D
Sbjct: 498 ESIAD 502



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 44/236 (18%)

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           +++ G    A+ +F  +  A   PD  T    LSACA +G L  G+ V   A   G + D
Sbjct: 84  HSRRGSPASALRVFRALPPAA-RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 356 IFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +F            G++ DA+KVF  MP  + V+W+ M++     G+  +A+ ++ RM +
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 405 EGGAARPNDVTFIGVLSAC-----------VHAGLVDEGRR-----------------LF 436
           +G   + ++V  IGV+ AC           VH  L+  G R                 L 
Sbjct: 203 DG--VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 437 DLMSSSFGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           D+    FGL+       +S M+  +A+ G   EA      M     +   GAL+ A
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSA 316


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 181/523 (34%), Positives = 277/523 (52%), Gaps = 20/523 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N LL   ++  +   A  +F  +   +  ++N MI G        + +L ++ QM   G+
Sbjct: 161 NSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANT-ALVVFNQMVDSGV 219

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           + D  +   V  +C  L  L  G  VH  V +  L +   VS++L+ MYA+CG +D AR 
Sbjct: 220 EIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARL 278

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD + ERD+VSW SMI+GY   G AK A+ LF  M+ E   P+ +T+  +L +C  L +
Sbjct: 279 VFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNN 338

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L  G+ + G+V+K ++     + ++LIDMY KC  L  +  VF     K  V WNA+++ 
Sbjct: 339 LKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSG 398

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH- 354
              N L+ EAI LF +M   GV  +  T   +L A   +  L     ++ Y  + G    
Sbjct: 399 CVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSN 458

Query: 355 --------DIF--CGSIDDALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERM 402
                   DI+  CGS++ A K+F  +PV  +    W+ +I+    +G    A+ LF++M
Sbjct: 459 IQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQM 518

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            + G   +PNDVTF  VL +C HAG+VD+G  LF  M      IP  +HY+CMVDL  RA
Sbjct: 519 VQSG--VKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRA 576

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G + EA+D ++ MP      V GALLGAC   +N ++ +   + L E+E  N+GNYV+ +
Sbjct: 577 GRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLA 636

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQSNW 565
           K++A L  W+D+  +R  M + G+ K P  S I   +    NW
Sbjct: 637 KLYAALGRWEDAENVRQRMDDIGLRKAPAHSLI---EAGTVNW 676



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 252/485 (51%), Gaps = 28/485 (5%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNY---ASLLFHQISRP 81
           + LL       S  + +Q+H  ++ + +   +   + +       Y   A  LF ++ + 
Sbjct: 25  QSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARKLFDELRQR 84

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK---PDNFTYPFVFISCANLLALNHG 138
               +N MI+ +  A   Y  ++K++ +M  LG K   PDN+TYPFV  +C+ LL + +G
Sbjct: 85  GTLLYNFMIK-MYIAKGDYFEAMKVFLEM--LGSKDCCPDNYTYPFVIKACSELLLVEYG 141

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H             V +SL+ MY  CG+++ ARKVFD ++E+ +VSWN+MI+GY K 
Sbjct: 142 RVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKN 201

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
           G+A  A+ +F +M +     D  ++VSVL +CG L +L +G+ V G +V+ K+     + 
Sbjct: 202 GFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHG-LVEEKVLGKKIVS 260

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +AL+DMY KCG++  AR VFD MV +DVV+W +MI  Y  NG +  A+ LF  M+  G+ 
Sbjct: 261 NALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLR 320

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
           P+ +T+  +L ACAS+  L  G+ +  +  ++ L  ++            C  +  +  V
Sbjct: 321 PNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSV 380

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
           F        V WNA++S    N  A EA+ LF++M  EG     N  T   +L A    G
Sbjct: 381 FTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEG--VEINAATCNSLLPA---YG 435

Query: 428 LVDEGRRLFDLMSSSF--GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
           ++ + + + ++ S     G +   +  + ++D+Y++ G L  A      +P  V +I + 
Sbjct: 436 ILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVW 495

Query: 486 ALLGA 490
           +++ A
Sbjct: 496 SIIIA 500


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 269/503 (53%), Gaps = 26/503 (5%)

Query: 70  YASLLFHQ-ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFI 127
           YA  LF Q   R + +  N MI+      Q Y  S  LY  + K     PDNFT+  +  
Sbjct: 28  YARKLFDQRPQRDDSFLSNSMIKAYLETRQ-YPDSFALYRDLRKETCFAPDNFTFTTLTK 86

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           SC+  + +  G+ +HS +++ G   D +VS  ++ MYA+ GK+  AR  FDE+  R  VS
Sbjct: 87  SCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVS 146

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           W ++ISGY + G    A +LF +M     + D +   +++      GD+   + +   + 
Sbjct: 147 WTALISGYIRCGELDLASKLFDQM---PHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
              +       + +I  Y     +  AR++FDAM  +++V+WN MI  Y QN    E I 
Sbjct: 204 HKTV----ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIR 259

Query: 308 LFNRMK-YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF 357
           LF  M+    ++PD +T++ VL A +  GAL LG+W   +  ++ L           D++
Sbjct: 260 LFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMY 319

Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
             CG I+ A ++F++MP     SWNAMI   A NG A  AL LF  M  E    +P+++T
Sbjct: 320 SKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIE---EKPDEIT 376

Query: 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
            + V++AC H GLV+EGR+ F +M    GL  K EHY CMVDL  RAG L EA D +  M
Sbjct: 377 MLAVITACNHGGLVEEGRKWFHVMRE-MGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM 435

Query: 476 PEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535
           P + + I+L + L AC + K+ + ++R+++  +E+E  N GNYV+   ++A  K WDD  
Sbjct: 436 PFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFG 495

Query: 536 KMRALMREKGVSKTPGCSWIGID 558
            ++ +MR+    K  GCS I I+
Sbjct: 496 MVKNVMRKNQAKKEVGCSLIEIN 518



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 9/222 (4%)

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLGLKPDNFTY 122
           ++KD + A  LF  +   N  ++N MI G     Q     ++L+ +M+    L PD+ T 
Sbjct: 219 NIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQP-QEGIRLFQEMQATTSLDPDDVTI 277

Query: 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE 182
             V  + ++  AL+ G   H  V +  LD+   V  +++ MY++CG+++ A+++FDE+ E
Sbjct: 278 LSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPE 337

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KW 241
           + + SWN+MI GY+  G A+ A++LF  M  EE  PDEIT+++V+ +C   G +  G KW
Sbjct: 338 KQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKW 396

Query: 242 VEGFVVKNKMDLNFYMG--SALIDMYGKCGALVPARRVFDAM 281
              F V  +M LN  +     ++D+ G+ G+L  A  +   M
Sbjct: 397 ---FHVMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNM 435


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 285/510 (55%), Gaps = 34/510 (6%)

Query: 71  ASLLFHQISRPNEYAFNVMI-----RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
           A  LF ++ +P+  ++N +I     RG T        + +L+ +M+   L  D FT   +
Sbjct: 93  AHQLFDEMPQPDSVSYNTLIAAYARRGDTQP------AFQLFLEMREAFLDMDGFTLSGI 146

Query: 126 FISCANLLALNHGV--SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE- 182
             +C     +N G+   +H+     GLD    V ++LIT Y++ G L  AR++F  + E 
Sbjct: 147 ITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSED 202

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
           RD VSWNSM+  Y +     +A+EL+  M     + D  TL SVL +  ++ DL+ G   
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGA-LVPARRVFDAMVNKDVVTWNAMITAYA-QNG 300
              ++K+    N ++GS LID+Y KCG  ++  R+VFD + N D+V WN MI+ Y+    
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--- 357
           LS+EA+  F +++  G  PD  +L+ V+SAC+++ +   G+ V   A +  +  +     
Sbjct: 323 LSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVN 382

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG++ DA  +F+ MP  N VS+N+MI+  A +G   ++L LF+RM +    
Sbjct: 383 NALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFT 442

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
             P ++TFI VL+AC H G V++G+  F++M   FG+ P++ H+SCM+DL  RAG LSEA
Sbjct: 443 --PTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEA 500

Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
              +E +P         ALLGAC+   N +++ +    LL+++  N+  YV+ + I+++ 
Sbjct: 501 ERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDN 560

Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
               D+A +R LMR++GV K PGCSWI ++
Sbjct: 561 GRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 206/442 (46%), Gaps = 56/442 (12%)

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV----------- 176
           +C     L  G S+H+   K  +    ++S+  + +Y++C +L +AR+V           
Sbjct: 17  TCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFS 76

Query: 177 --------------------FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216
                               FDE+ + D VS+N++I+ Y++ G  + A +LF  MRE   
Sbjct: 77  FNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFL 136

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
             D  TL  ++ +CG   ++ L + +    V   +D    +G+ALI  Y K G L  ARR
Sbjct: 137 DMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 277 VFDAMV-NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +F  +  ++D V+WN+M+ AY Q+   ++A+ L+  M   G+  D  TL  VL+A  ++ 
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 336 ALDLGKWVDKYASQRGLRHDIFCGS--ID----------DALKVFEDMPVTNEVSWNAMI 383
            L  G        + G   +   GS  ID          D  KVF+++   + V WN MI
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314

Query: 384 SALA-FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           S  + +   + EAL  F ++  +G   RP+D + + V+SAC +     +GR++  L   +
Sbjct: 315 SGYSLYEDLSDEALECFRQL--QGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGL---A 369

Query: 443 FGLIPKSEHYS---CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
             L   S   S    ++ +Y++ G+L +A    + MPE  + +   +++    +      
Sbjct: 370 LKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEH-NTVSYNSMIAGYAQHGMGFQ 428

Query: 500 SQRVMQLLLEIESSNSGNYVIS 521
           S  + Q +LE++ + +    IS
Sbjct: 429 SLHLFQRMLEMDFTPTNITFIS 450



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 50/281 (17%)

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV--------- 277
           L +C    DL  GK +    +K+ +  + Y+ +  + +Y KC  L  ARRV         
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 278 ----------------------FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
                                 FD M   D V++N +I AYA+ G +  A  LF  M+ A
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREA 134

Query: 316 GVNPDKITLIGVLSACA-------SIGALDLGKWVDKYASQRGLRHDIFC--GSIDDALK 366
            ++ D  TL G+++AC         + AL +   +D Y S        +   G + +A +
Sbjct: 135 FLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 367 VF----EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +F    ED    +EVSWN+M+ A   +    +AL L+  M+  G     +  T   VL+A
Sbjct: 195 IFHWLSED---RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIV--DIFTLASVLTA 249

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             +   +  G +    +  S G    S   S ++DLY++ G
Sbjct: 250 FTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCG 289


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 263/503 (52%), Gaps = 60/503 (11%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV---FKIGLDEDDHVSHS 159
           +++L Y+++    KP    Y  +   C    AL  G  VH+ +     IGL    ++S+ 
Sbjct: 107 AVQLLYRIE----KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGL----YISNR 158

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM-------- 211
           L+ MYA+CG L  A KVFDE+  RDL SWN MISGY K G  ++A  LF +M        
Sbjct: 159 LLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSW 218

Query: 212 -----------REEEFL-------------PDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
                      R EE L              ++ T+ S L +   +  L +GK + G ++
Sbjct: 219 TAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIM 278

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           +  +D +  +  +L+DMYGKCG++  AR +FD M  +DVV+W  MI  Y +NG   E   
Sbjct: 279 RMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFA 338

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
           LF  +  + + P+  T  GVL+ACA + A DLGK +  Y  + G   D F          
Sbjct: 339 LFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGF--DSFSSAASALVHM 396

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CG I++A  VFE +P  +  SW +++   A +G+  +AL  FE + K G   +P+ +
Sbjct: 397 YSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSG--TKPDGI 454

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
            FIGVLSAC HAGLVD+G   F  +    GL    +HY+C++DL ARAG  +EA   +  
Sbjct: 455 AFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINE 514

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP K D+ +  ALLG C+   N ++++R  + L EIE  N   YV  + I+A+  M  + 
Sbjct: 515 MPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEE 574

Query: 535 AKMRALMREKGVSKTPGCSWIGI 557
           A +R  M  +G+ K PG SWI I
Sbjct: 575 ANIRETMDSRGIVKKPGMSWIEI 597



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 216/441 (48%), Gaps = 21/441 (4%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           +  +LL +  KC S    +++  +M+   +   N ++   +   +F  A  LF ++   +
Sbjct: 155 ISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRD 214

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVSV 141
            +++  +I G      +   +L+LY  M++    K +  T      + A + +L+ G  +
Sbjct: 215 NFSWTAIISGCVQH-NRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKI 273

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + ++GLD D+ V  SL+ MY +CG ++ AR +FD++ ERD+VSW +MI  Y K G  
Sbjct: 274 HGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRR 333

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           +E   LF  +     +P++ T   VL +C DL    LGK +  ++V+   D      SAL
Sbjct: 334 EEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASAL 393

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + MY KCG +  A+ VF+ +   D+ +W +++  YAQ+G  ++A+  F  +  +G  PD 
Sbjct: 394 VHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDG 453

Query: 322 ITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDI-----------FCGSIDDALKVFE 369
           I  IGVLSACA  G +D G ++      + GL   I             G   +A  +  
Sbjct: 454 IAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIIN 513

Query: 370 DMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAG 427
           +MP+  ++  W A++       R H  L L +R +K      P N  T++ + +    AG
Sbjct: 514 EMPIKPDKYIWAALLGGC----RIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAG 569

Query: 428 LVDEGRRLFDLMSSSFGLIPK 448
           +  E   + + M S  G++ K
Sbjct: 570 MRAEEANIRETMDSR-GIVKK 589



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 159/373 (42%), Gaps = 63/373 (16%)

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           ++ G S++   +EAV+L  R+ +    P     +++L  C     L  GK V   + K  
Sbjct: 97  ILCGQSRL---REAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQVHAHI-KTS 148

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
             +  Y+ + L+DMY KCG+LV A +VFD MV++D+ +WN MI+ Y + G   +A  LF+
Sbjct: 149 GSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFD 208

Query: 311 RMKYAGVNPDKITLIGVLSACAS------------------------------------I 334
           +M     N D  +   ++S C                                      I
Sbjct: 209 KMP----NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAI 264

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
            +L +GK +  +  + GL  D             CGSI++A  +F+ M   + VSW  MI
Sbjct: 265 PSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMI 324

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
                NGR  E   LF  +        PND TF GVL+AC      D G+++   M    
Sbjct: 325 HTYLKNGRREEGFALFRHLMNSN--IMPNDFTFAGVLNACADLAAEDLGKQIHAYM-VRV 381

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503
           G    S   S +V +Y++ G +  A    E +P+  D     +LL    +    D +   
Sbjct: 382 GFDSFSSAASALVHMYSKCGDIENAKSVFEILPQP-DLFSWTSLLVGYAQHGQHDKALHF 440

Query: 504 MQLLLEIESSNSG 516
            +LLL+  +   G
Sbjct: 441 FELLLKSGTKPDG 453


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/559 (30%), Positives = 298/559 (53%), Gaps = 29/559 (5%)

Query: 18  NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLL--------IRIIDLKDFN 69
           +DP  LR     LL  C + +T+ ++H  ++++     + +L         R  DL    
Sbjct: 1   DDPRRLRR----LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAE 56

Query: 70  YASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129
            ++L     S  +  A+N ++   +     +  +L+++  +     +PD+ T+     +C
Sbjct: 57  -STLATAPTSPSSIPAWNALLAAHSRGASPHE-ALRVFRALPPAA-RPDSTTFTLALSAC 113

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A L  L  G  V       G   D  V  S++ +YA+CG +D A KVFD +R+RD V+W+
Sbjct: 114 ARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWS 173

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +M++G+   G   +A+E++ RMR +    DE+ +V V+ +C   GD  +G  V G+++++
Sbjct: 174 TMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRH 233

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            M ++  + ++L+DMY K G    ARRVF+ M +++ V+W+A+I+  AQ G ++EA+ LF
Sbjct: 234 AMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLF 293

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+ +G++P+   ++G L AC+ +G L LGK +  +   R L  D             C
Sbjct: 294 RMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFI-LRTLELDRMVGTAVIDMYSKC 352

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GS+  A  +F+ +   + +SWN MI+    +GR  +AL LF+ M +     RP+  TF  
Sbjct: 353 GSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRN--EVRPDHATFAS 410

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           +LSA  H+GLV+EG+  F+ M + +G+ P  +H  C+VDL AR+G + EA   V  +  K
Sbjct: 411 LLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSK 470

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               +L ALL  C      ++ +   + +LE++  + G   + S ++A  K W    ++R
Sbjct: 471 PTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVR 530

Query: 539 ALMREKGVSKTPGCSWIGI 557
            LM++ G  K PGCS I I
Sbjct: 531 KLMKDHGSKKAPGCSSIEI 549


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 260/454 (57%), Gaps = 14/454 (3%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           GL  D+ TY  +   C +  A++ G  +   ++  G      + + LI MY +   L+ A
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
            ++FD++ +R+++SW +MIS YSK    ++A+EL   M  +   P+  T  SVL SC  +
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGM 175

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
            D+   + +   ++K  ++ + ++ SALID++ K G    A  VFD MV  D + WN++I
Sbjct: 176 SDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQ 349
             +AQN  S+ A+ LF RMK AG   ++ TL  VL AC  +  L+LG      + KY   
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQD 292

Query: 350 RGLRH---DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
             L +   D++C  GS++DAL+VF  M   + ++W+ MIS LA NG + EAL LFERM  
Sbjct: 293 LILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKS 352

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G   +PN +T +GVL AC HAGL+++G   F  M   +G+ P  EHY CM+DL  +AG 
Sbjct: 353 SG--TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L +A   +  M  + D +    LLGAC+ Q+N  +++   + ++ ++  ++G Y + S I
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNI 470

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +AN + WD   ++R  MR++G+ K PGCSWI ++
Sbjct: 471 YANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 212/413 (51%), Gaps = 32/413 (7%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRI-----IDLKDFNYASLLFHQISRP 81
           L+K C S + V +   I   +  N   +P   L+ +     +     N A  LF Q+ + 
Sbjct: 67  LIKCCISNRAVHEGNLICRHLYFNG-HRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQR 125

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI   +   + +  +L+L   M R  ++P+ +TY  V  SC  +  +     +
Sbjct: 126 NVISWTTMISAYSKC-KIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR---ML 181

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + K GL+ D  V  +LI ++A+ G+ + A  VFDE+   D + WNS+I G+++   +
Sbjct: 182 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+ELF RM+   F+ ++ TL SVL +C  L  L LG      +VK   DL   + +AL
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL--ILNNAL 299

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG+L  A RVF+ M  +DV+TW+ MI+  AQNG S EA+ LF RMK +G  P+ 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 322 ITLIGVLSACASIGALDLGKW----------VDKYASQRGLRHDIF--CGSIDDALKVFE 369
           IT++GVL AC+  G L+ G +          +D      G   D+    G +DDA+K+  
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 370 DMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           +M    + V+W  ++ A     R    ++L E  +K+  A  P D     +LS
Sbjct: 420 EMECEPDAVTWRTLLGAC----RVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 274/497 (55%), Gaps = 16/497 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F +I   N  ++N +I   +    KY  +L ++  M   G++P++ T   +      L 
Sbjct: 298 VFDEIDERNVISWNAIITSFSFR-GKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELG 356

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G+ VH    K+ ++ D  +S+SLI MYA+ G    A  +F+++  R++VSWN+MI+
Sbjct: 357 LFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIA 416

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            +++     EAVEL  +M+ +   P+ +T  +VL +C  LG L +GK +   +++    L
Sbjct: 417 NFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSL 476

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++ +AL DMY KCG L  A+ VF+  V +D V++N +I  Y++   S E++ LF+ M+
Sbjct: 477 DLFVSNALTDMYSKCGCLNLAQNVFNISV-RDEVSYNILIIGYSRTNDSLESLRLFSEMR 535

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             G+ PD ++ +GV+SACA++  +  GK +     ++     +F           CG ID
Sbjct: 536 LLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRID 595

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A KVF  +   +  SWN MI      G    A+ LFE M ++G     + V+F+ VLSA
Sbjct: 596 LATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDG--VEYDSVSFVAVLSA 653

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GL+++GR+ F +M     + P   HY+CMVDL  RAG + EA D +  +    D  
Sbjct: 654 CSHGGLIEKGRKYFKMMCD-LNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTN 712

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALLGAC+   N ++     + L E++  + G Y++ S ++A  + WD++ K+R LM+
Sbjct: 713 IWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMK 772

Query: 543 EKGVSKTPGCSWIGIDD 559
            +G  K PGCSW+ + D
Sbjct: 773 SRGAKKNPGCSWVQVGD 789



 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 237/466 (50%), Gaps = 32/466 (6%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRII-DLKDFNYAS---LLFHQISRP 81
           LL L   C +    +Q+H   L++ F+ +   L   +I     F + S   LLF      
Sbjct: 40  LLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAY 99

Query: 82  NEYAF--NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +  AF  N +IR  + A          Y  M R G+KPD  TYPFV   C++ + +  G 
Sbjct: 100 SRSAFLWNTLIRANSIA--GVFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGR 157

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH   FK+G D D  V ++L+  Y  CG    A KVFDE+ ERD VSWN++I   S  G
Sbjct: 158 EVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHG 217

Query: 200 YAKEAVELFGRM--REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK-NKMDLNFY 256
           + +EA+  F  M   +    PD +T+VSVL  C +  D V+ + V  + +K   +  +  
Sbjct: 218 FYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVK 277

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           +G+AL+D+YGKCG+   +++VFD +  ++V++WNA+IT+++  G   +A+ +F  M   G
Sbjct: 278 VGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEG 337

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
           + P+ +T+  +L     +G   LG  V  ++ +  +  D+F            GS   A 
Sbjct: 338 MRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIAS 397

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
            +F  M V N VSWNAMI+  A N   +EA+ L  +M  +G    PN+VTF  VL AC  
Sbjct: 398 TIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKG--ETPNNVTFTNVLPACAR 455

Query: 426 AGLVDEGRRLFDLM---SSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            G ++ G+ +   +    SS  L   +     + D+Y++ G L+ A
Sbjct: 456 LGFLNVGKEIHARIIRVGSSLDLFVSNA----LTDMYSKCGCLNLA 497



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 225/420 (53%), Gaps = 29/420 (6%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFV 125
           F  A  +F ++   ++ ++N +I GL +    Y  +L  +  M   + G++PD  T   V
Sbjct: 188 FGDAMKVFDEMPERDKVSWNTVI-GLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSV 246

Query: 126 FISCANLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
              CA          VH    K+GL      V ++L+ +Y +CG   +++KVFDEI ER+
Sbjct: 247 LPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERN 306

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           ++SWN++I+ +S  G   +A+++F  M +E   P+ +T+ S+L   G+LG   LG  V G
Sbjct: 307 VISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHG 366

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
           F +K  ++ + ++ ++LIDMY K G+   A  +F+ M  +++V+WNAMI  +A+N L  E
Sbjct: 367 FSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYE 426

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ L  +M+  G  P+ +T   VL ACA +G L++GK +     + G   D+F       
Sbjct: 427 AVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTD 486

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG ++ A  VF ++ V +EVS+N +I   +    + E+L LF  M   G   RP+ 
Sbjct: 487 MYSKCGCLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLG--MRPDI 543

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEA 468
           V+F+GV+SAC +   + +G+ +  L      L+ K  H      + ++DLY R G +  A
Sbjct: 544 VSFMGVVSACANLAFIRQGKEIHGL------LVRKLFHTHLFVANSLLDLYTRCGRIDLA 597



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 223/466 (47%), Gaps = 47/466 (10%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+    +L +L +    K   ++H   L   I+   F+   +ID+         AS +F+
Sbjct: 342 SVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFN 401

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           ++   N  ++N MI        +Y  +++L  QM+  G  P+N T+  V  +CA L  LN
Sbjct: 402 KMGVRNIVSWNAMIANFARNRLEY-EAVELVRQMQAKGETPNNVTFTNVLPACARLGFLN 460

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H+ + ++G   D  VS++L  MY++CG L+ A+ VF+ I  RD VS+N +I GYS
Sbjct: 461 VGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYS 519

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           +   + E++ LF  MR     PD ++ + V+ +C +L  +  GK + G +V+     + +
Sbjct: 520 RTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLF 579

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + ++L+D+Y +CG +  A +VF  + NKDV +WN MI  Y   G  + AI LF  MK  G
Sbjct: 580 VANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDG 639

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV-TN 375
           V  D ++ + VLSAC+  G ++ G+   KY                   K+  D+ +   
Sbjct: 640 VEYDSVSFVAVLSACSHGGLIEKGR---KY------------------FKMMCDLNIEPT 678

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG--- 432
              +  M+  L   G   EA  L   +S       P+   +  +L AC   G ++ G   
Sbjct: 679 HTHYACMVDLLGRAGLMEEAADLIRGLS-----IIPDTNIWGALLGACRIHGNIELGLWA 733

Query: 433 -RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
              LF+L     G      +Y  + ++YA A    E WD   ++ E
Sbjct: 734 AEHLFELKPQHCG------YYILLSNMYAEA----ERWDEANKVRE 769


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/547 (30%), Positives = 285/547 (52%), Gaps = 19/547 (3%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
           LLS   +  S   V+Q+H+ ++     + +   N LL      +    A  LF+ I   +
Sbjct: 204 LLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERD 263

Query: 83  EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
              FN ++ G +        ++ L+++M+ +G +P  FT+  +  +   L  +  G  VH
Sbjct: 264 SVTFNALLTGYSKEGFN-REAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVH 322

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
             V K     +  V+++L+  Y++  ++  A K+F E+ E D +S+N +++ Y+  G  K
Sbjct: 323 GFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVK 382

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E++ELF  ++   F        ++L       +L +G+ +    +         +G++L+
Sbjct: 383 ESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLV 442

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           DMY KCG    A R+F  +  +  V W AMI++Y Q GL  + + LF  M+ A +  D  
Sbjct: 443 DMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAA 502

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T   ++ ACAS+ +L LGK +  +    G   ++F           CGSI DAL++F++M
Sbjct: 503 TYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEM 562

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           PV N VSWNA+ISA A NG     L LFE M + G   +P+ V+ + +L AC H GLV+E
Sbjct: 563 PVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSG--LQPDSVSLLSILCACSHCGLVEE 620

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G + FD M+  + L+PK EHY+  +D+  R G   EA   + +MP + DEI+  ++L +C
Sbjct: 621 GLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSC 680

Query: 492 QKQKNTDVSQRVMQLLLEIES-SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
              KN +++++    L  ++   ++  YV  S I+A    WD+  K++  MRE+GV K P
Sbjct: 681 GIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVP 740

Query: 551 GCSWIGI 557
             SW+ I
Sbjct: 741 AYSWVEI 747



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 233/496 (46%), Gaps = 45/496 (9%)

Query: 54  KPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRG--------------------L 93
           + NFL+   +   D N A  LF ++   N ++ N MI G                     
Sbjct: 103 RSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRT 162

Query: 94  TTAW----------QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
              W           ++  +  L+ +M R G+ PD+ +   +        ++N    VHS
Sbjct: 163 AVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHS 222

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            V K+G D    VS+SL+  Y +   L  A ++F++I ERD V++N++++GYSK G+ +E
Sbjct: 223 HVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNRE 282

Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
           A+ LF +M+E  + P E T  ++L +   L D+  G+ V GFVVK     N ++ +AL+D
Sbjct: 283 AINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLD 342

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
            Y K   +V A ++F  M   D +++N ++T YA NG   E++ LF  +++ G +     
Sbjct: 343 FYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFP 402

Query: 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMP 372
              +LS  A    LD+G+ +           +I            CG   +A ++F D+ 
Sbjct: 403 FATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLA 462

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
           + + V W AMIS+    G   + L LF  M +    A  +  T+  ++ AC     +  G
Sbjct: 463 IQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGA--DAATYASIVRACASLASLTLG 520

Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
           ++L   +  S G I      S +VD+YA+ G + +A    + MP + + +   AL+ A  
Sbjct: 521 KQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVR-NSVSWNALISAYA 578

Query: 493 KQKNTDVSQRVMQLLL 508
           +  + D + R+ + ++
Sbjct: 579 QNGDGDCTLRLFEEMV 594



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 185/395 (46%), Gaps = 49/395 (12%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           +N   P        L A    + V +S+ K G + + + S+ L+  + + G L+ ARK+F
Sbjct: 65  NNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLF 124

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-------------------- 217
           DE+  +++ S N+MI GY K G   EA  LF  M +   +                    
Sbjct: 125 DEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFG 184

Query: 218 -----------PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
                      PD ++L ++L    +   +   + V   V+K   D    + ++L+D Y 
Sbjct: 185 LFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYC 244

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           K  +L  A ++F+ +  +D VT+NA++T Y++ G + EAI LF +M+  G  P + T   
Sbjct: 245 KTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAA 304

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFEDMPVTN 375
           +L+A   +  ++ G+ V  +  +     ++F  +           + +A K+F +MP  +
Sbjct: 305 ILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVD 364

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            +S+N +++  A+NGR  E+L LF+ +   G   R  +  F  +LS    +  +D GR++
Sbjct: 365 GISYNVLVTCYAWNGRVKESLELFKELQFTGFDRR--NFPFATLLSIAAISLNLDIGRQI 422

Query: 436 FD--LMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
               +++ +   I      + +VD+YA+ G   EA
Sbjct: 423 HSQTIVTDAISEILVG---NSLVDMYAKCGEFGEA 454


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 269/509 (52%), Gaps = 17/509 (3%)

Query: 69   NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
            +YA+ +F ++   +   +N M+ G   +      +  L+ +M+   + PD+ T   +  S
Sbjct: 710  DYAAKVFERMPERDATTWNAMLSGFCQSGHT-DKAFSLFREMRLNEITPDSVTVMTLIQS 768

Query: 129  CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLV 186
             +   +L    ++H+   ++G+D    V+++ I+ Y +CG LDSA+ VF+ I   +R +V
Sbjct: 769  ASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVV 828

Query: 187  SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
            SWNSM   YS  G A +A  L+  M  EEF PD  T +++  SC +   L  G+ +    
Sbjct: 829  SWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHA 888

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            +    D +    +  I MY K      AR +FD M ++  V+W  MI+ YA+ G  +EA+
Sbjct: 889  IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 948

Query: 307  MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
             LF+ M  +G  PD +TL+ ++S C   G+L+ GKW+D  A   G + D           
Sbjct: 949  ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDM 1008

Query: 358  ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
               CGSI +A  +F++ P    V+W  MI+  A NG   EAL LF +M       +PN +
Sbjct: 1009 YSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLD--YKPNHI 1066

Query: 415  TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
            TF+ VL AC H+G +++G   F +M   + + P  +HYSCMVDL  R G L EA + +  
Sbjct: 1067 TFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRN 1126

Query: 475  MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
            M  K D  + GALL AC+  +N  ++++  + L  +E   +  YV  + I+A   MWD  
Sbjct: 1127 MSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGF 1186

Query: 535  AKMRALMREKGVSKTPGCSWIGIDDPKQS 563
            A++R++M+++ + K PG S I ++    S
Sbjct: 1187 ARIRSIMKQRNIKKYPGESVIQVNGKNHS 1215



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 201/393 (51%), Gaps = 21/393 (5%)

Query: 103  SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
            SL L+ +MKR G +P+NFT+PFV  +CA L  +     VH+ + K     D  V  + + 
Sbjct: 642  SLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVD 701

Query: 163  MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
            M+ +C  +D A KVF+ + ERD  +WN+M+SG+ + G+  +A  LF  MR  E  PD +T
Sbjct: 702  MFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVT 761

Query: 223  LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
            +++++ S      L L + +    ++  +D+   + +  I  YGKCG L  A+ VF+A+ 
Sbjct: 762  VMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAID 821

Query: 283  NKD--VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
              D  VV+WN+M  AY+  G + +A  L+  M      PD  T I + ++C +   L  G
Sbjct: 822  RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQG 881

Query: 341  KWVDKYASQRGLRHDI---------FCGSID--DALKVFEDMPVTNEVSWNAMISALAFN 389
            + +  +A   G   DI         +  S D   A  +F+ M     VSW  MIS  A  
Sbjct: 882  RLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEK 941

Query: 390  GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
            G   EAL LF  M K G   +P+ VT + ++S C   G ++ G +  D  +  +G   K 
Sbjct: 942  GDMDEALALFHAMIKSG--EKPDLVTLLSLISGCGKFGSLETG-KWIDARADIYGC--KR 996

Query: 450  EHY---SCMVDLYARAGHLSEAWDFVERMPEKV 479
            ++    + ++D+Y++ G + EA D  +  PEK 
Sbjct: 997  DNVMICNALIDMYSKCGSIHEARDIFDNTPEKT 1029



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 155/367 (42%), Gaps = 76/367 (20%)

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +WN  I          E++ LF  M+   F P+  T   V  +C  L D+   + V   +
Sbjct: 625 AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 684

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
           +K+    + ++G+A +DM+ KC ++  A +VF+ M  +D  TWNAM++ + Q+G +++A 
Sbjct: 685 IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAF 744

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDL--------------------GKWVDKY 346
            LF  M+   + PD +T++ ++ + +   +L L                      W+  Y
Sbjct: 745 SLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTY 804

Query: 347 ASQRGLRHDIFCGSIDDALKVFE--DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
                      CG +D A  VFE  D      VSWN+M  A +  G A +A  L+  M +
Sbjct: 805 GK---------CGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLR 855

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEG-------------------------------- 432
           E    +P+  TFI + ++C +   + +G                                
Sbjct: 856 E--EFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDT 913

Query: 433 ---RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM---PEKVDEIVLGA 486
              R LFD+M+S   +      ++ M+  YA  G + EA      M    EK D + L +
Sbjct: 914 CSARLLFDIMTSRTCV-----SWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLS 968

Query: 487 LLGACQK 493
           L+  C K
Sbjct: 969 LISGCGK 975



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
           RR++       V  WN  I          E+++LF  MK  G  P+  T   V  ACA +
Sbjct: 612 RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 671

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
             +   + V  +  +     D+F           C S+D A KVFE MP  +  +WNAM+
Sbjct: 672 ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 731

Query: 384 SALAFNGRAHEALLLFERM 402
           S    +G   +A  LF  M
Sbjct: 732 SGFCQSGHTDKAFSLFREM 750


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/501 (32%), Positives = 268/501 (53%), Gaps = 16/501 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFVFIS 128
           + ++F   +  N  ++N M+ G +     +  +  L  QM      +K D  T       
Sbjct: 330 SQMIFKLNNNKNVVSWNTMVGGFSAEGDIHG-TFDLLRQMLAGSEDVKADEVTILNAVPV 388

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C +   L     +H    K     D+ ++++ +  YA+CG L  A++VF  IR + L SW
Sbjct: 389 CFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSW 448

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           N++I GY++    + +++   +M+    LPD  T+ S+L +C  L  L LGK V GF+++
Sbjct: 449 NALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIR 508

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           N ++ + ++  +++ +Y  CG L   + +FDAM +  +V+WN +IT + QNG    A+ L
Sbjct: 509 NWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGL 568

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
           F +M   G+ P  I+++ V  AC+ + +L LG+    YA +  L  + F           
Sbjct: 569 FRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAK 628

Query: 359 -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
            G+I  + KVF  +   +  SWNAMI     +GRA EA+ LFE M + G    P+D+TF+
Sbjct: 629 NGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTG--RNPDDLTFL 686

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
           GVL+AC H+GL+ EG R  D M SSFGL P  +HY+C++D+  RAG L  A      M E
Sbjct: 687 GVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSE 746

Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
           + D  +  +LL  C+  +N ++ ++V   L  +E     NYV+ S ++A L  WDD  ++
Sbjct: 747 EPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQV 806

Query: 538 RALMREKGVSKTPGCSWIGID 558
           R  M+E  + K  GCSWI ++
Sbjct: 807 RQRMKEMSLRKDAGCSWIELN 827



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 193/349 (55%), Gaps = 18/349 (5%)

Query: 68  FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
            +YA  +FH I      ++N +I G   +      SL  + QMK  GL PDNFT   +  
Sbjct: 430 LSYAQRVFHGIRSKTLNSWNALIGGYAQS-SDPRLSLDAHLQMKNSGLLPDNFTVCSLLS 488

Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
           +C+ L +L  G  VH  + +  L+ D  V  S++++Y  CG+L + + +FD + +  LVS
Sbjct: 489 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVS 548

Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           WN++I+G+ + G+ + A+ LF +M      P  I++++V G+C  L  L LG+    + +
Sbjct: 549 WNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYAL 608

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K+ ++ N ++  ++IDMY K GA+  + +VF+ +  K   +WNAMI  Y  +G + EAI 
Sbjct: 609 KHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIK 668

Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDI---------- 356
           LF  M+  G NPD +T +GVL+AC   G L  G +++D+  S  GL+ ++          
Sbjct: 669 LFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDML 728

Query: 357 -FCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMS 403
              G +D+AL+V  +M    +V  WN+++S      R H+ L + E+++
Sbjct: 729 GRAGQLDNALRVAAEMSEEPDVGIWNSLLSWC----RIHQNLEMGEKVA 773



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 31/364 (8%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCANLL 133
           F  +   N + +N +I   +   + Y   L+++ +M  +  L PDNFT+P V  +CA + 
Sbjct: 143 FDALRSKNLFQWNAVISSYSRN-ELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGIS 201

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G++VH  V K GL ED  V ++L++ Y   G +  A K+FD + ER+LVSWNSMI 
Sbjct: 202 DVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIR 261

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            +S  G             +  F+PD  T+V+VL  C    ++ +GK V G+ VK  +D 
Sbjct: 262 VFSDNG------------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDK 309

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
              + +AL+DMY K G ++ ++ +F    NK+VV+WN M+  ++  G  +    L  +M 
Sbjct: 310 ELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQM- 368

Query: 314 YAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            AG   V  D++T++  +  C     L   K +  Y+ ++   +D             CG
Sbjct: 369 LAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCG 428

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+  A +VF  +      SWNA+I   A +     +L    +M   G    P++ T   +
Sbjct: 429 SLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSG--LLPDNFTVCSL 486

Query: 420 LSAC 423
           LSAC
Sbjct: 487 LSAC 490



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 24/286 (8%)

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           L  DD +   +ITMYA CG  D +R  FD +R ++L  WN++IS YS+     E +E+F 
Sbjct: 116 LRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFI 175

Query: 210 RM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
           +M  +   LPD  T   V+ +C  + D+ +G  V G VVK  +  + ++G+AL+  YG  
Sbjct: 176 KMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTH 235

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
           G +  A ++FD M  +++V+WN+MI  ++ NG  + A M           PD  T++ VL
Sbjct: 236 GFVSDALKLFDIMPERNLVSWNSMIRVFSDNG-DDGAFM-----------PDVATVVTVL 283

Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEV 377
             CA    + +GK V  +A +  L  ++             G I D+  +F+     N V
Sbjct: 284 PVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVV 343

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           SWN M+   +  G  H    L  +M       + ++VT +  +  C
Sbjct: 344 SWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 174/352 (49%), Gaps = 16/352 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
           LLS   K  S +  +++H  ++ N++++  F+ + ++ L     +     +LF  +   +
Sbjct: 486 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNS 545

Query: 83  EYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
             ++N +I G L   + +   +L L+ QM   G++P   +   VF +C+ L +L  G   
Sbjct: 546 LVSWNTVITGHLQNGFPE--RALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREA 603

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K  L+++  ++ S+I MYA+ G +  + KVF+ ++E+   SWN+MI GY   G A
Sbjct: 604 HAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRA 663

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMGSA 260
           KEA++LF  M+     PD++T + VL +C   G L  G ++++       +  N    + 
Sbjct: 664 KEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYAC 723

Query: 261 LIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMIT--AYAQNGLSNEAIMLFNRMKYAGV 317
           +IDM G+ G L  A RV   M  + DV  WN++++     QN    E +      K   +
Sbjct: 724 VIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVA----AKLFVL 779

Query: 318 NPDKITLIGVLSAC-ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368
            P+K     +LS   A +G  D  + V +   +  LR D  C  I+   KVF
Sbjct: 780 EPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVF 831


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 256/468 (54%), Gaps = 48/468 (10%)

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
           ++ H + +H+S+ + GL  +  ++  L   YA  G+LD +  VF+   E ++ S++++I 
Sbjct: 59  SVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIH 118

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            + +      A   + +M      P+  T  SVL SC     L  GK +    +K  +  
Sbjct: 119 SHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGLGS 174

Query: 254 NFYMGSALIDMYGKCGALVPARRVFD-------------------------------AMV 282
           + Y+ + L+D+Y + G +V AR++FD                                M 
Sbjct: 175 DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMK 234

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +DVV WN MI  YAQ+G+ NE++ LF RM  A   P+++T++ VLSAC  +GAL+ G+W
Sbjct: 235 ERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRW 294

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  Y   +G++ ++            CGS++DA  VF+ +   + V+WN+MI   A +G 
Sbjct: 295 IHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGF 354

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           +  AL LFE M++ G   +P D+TFIG+LSAC H GLV+EGR  F LM   +G+ PK EH
Sbjct: 355 SQHALQLFEEMTETG--HKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEH 412

Query: 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
           Y CMV+L  RAGHL EA+  V+ M    D ++ G LLG C+   N  + + + + L++ +
Sbjct: 413 YGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQK 472

Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            +NSG YV+ S ++A    W+  AKMR LM+E G+ K  GCS I +D+
Sbjct: 473 LANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDN 520



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 216/429 (50%), Gaps = 59/429 (13%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLI-NFIQKP--NFLLIR-IIDLKDFNYASLLFHQISR 80
           E+  SL+ K  S   + QIH  +L       P  NF L R    L   + +  +F+    
Sbjct: 48  ERFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDE 107

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           PN ++F+ +I     + + +  +   Y QM   G++P+ FT+  V  SC+    L  G  
Sbjct: 108 PNVFSFSAIIHSHVQS-RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKV 162

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYAR---------------------------C----GK 169
           +H    K+GL  D +V   L+ +YAR                           C    G+
Sbjct: 163 LHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGE 222

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           LD AR +F+ ++ERD+V WN MI GY++ G   E+++LF RM   + +P+E+T+++VL +
Sbjct: 223 LDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSA 282

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           CG LG L  G+W+  ++    + +N ++G+ALIDMY KCG+L  AR VFD + +KDVV W
Sbjct: 283 CGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAW 342

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----D 344
           N+MI  YA +G S  A+ LF  M   G  P  IT IG+LSAC   G ++ G+       D
Sbjct: 343 NSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRD 402

Query: 345 KYASQRGLRHDIFC--------GSIDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEA 395
           KY  +  + H   C        G +++A  + ++M +  + V W  ++       R H  
Sbjct: 403 KYGIEPKIEH-YGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCC----RLHVN 457

Query: 396 LLLFERMSK 404
           + L E ++K
Sbjct: 458 IKLGEEIAK 466


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/454 (35%), Positives = 260/454 (57%), Gaps = 14/454 (3%)

Query: 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           GL  D+ TY  +   C +  A++ G  +   ++  G      + + LI MY +   L+ A
Sbjct: 56  GLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDA 115

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
            ++FD++ +R+++SW +MIS YSK    ++A+EL   M  +   P+  T  SVL SC  +
Sbjct: 116 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGM 175

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
            D+   + +   ++K  ++ + ++ SALID++ K G    A  VFD MV  D + WN++I
Sbjct: 176 SDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 232

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW----VDKYASQ 349
             +AQN  S+ A+ LF RMK AG   ++ TL  VL AC  +  L+LG      + KY   
Sbjct: 233 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQD 292

Query: 350 RGLRH---DIFC--GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
             L +   D++C  GS++DAL+VF  M   + ++W+ MIS LA NG + EAL LFERM  
Sbjct: 293 LILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKS 352

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G   +PN +T +GVL AC HAGL+++G   F  M   +G+ P  EHY CM+DL  +AG 
Sbjct: 353 SG--TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L +A   +  M  + D +    LLGAC+ Q+N  +++   + ++ ++  ++G Y + S I
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNI 470

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +AN + WD   ++R  MR++G+ K PGCSWI ++
Sbjct: 471 YANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 212/413 (51%), Gaps = 32/413 (7%)

Query: 30  LLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRI-----IDLKDFNYASLLFHQISRP 81
           L+K C S + V +   I   +  N   +P   L+ +     +     N A  LF Q+ + 
Sbjct: 67  LIKCCISNRAVHEGNLICRHLYFNG-HRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQR 125

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++  MI   +   + +  +L+L   M R  ++P+ +TY  V  SC  +  +     +
Sbjct: 126 NVISWTTMISAYSKC-KIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR---ML 181

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  + K GL+ D  V  +LI ++A+ G+ + A  VFDE+   D + WNS+I G+++   +
Sbjct: 182 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
             A+ELF RM+   F+ ++ TL SVL +C  L  L LG      +VK   DL   + +AL
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDL--ILNNAL 299

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +DMY KCG+L  A RVF+ M  +DV+TW+ MI+  AQNG S EA+ LF RMK +G  P+ 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 322 ITLIGVLSACASIGALDLGKW----------VDKYASQRGLRHDIF--CGSIDDALKVFE 369
           IT++GVL AC+  G L+ G +          +D      G   D+    G +DDA+K+  
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 370 DMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           +M    + V+W  ++ A     R    ++L E  +K+  A  P D     +LS
Sbjct: 420 EMECEPDAVTWRTLLGAC----RVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 273/502 (54%), Gaps = 17/502 (3%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG--LKPDNFTYPFVFIS 128
            A ++F   +  N  ++N M+ G +     +  +  +  QM   G  +K D  T       
Sbjct: 701  AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHG-TFDVLRQMLAGGEDVKADEVTILNAVPV 759

Query: 129  CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
            C +   L     +H    K     ++ V+++ +  YA+CG L  A++VF  IR + + SW
Sbjct: 760  CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 819

Query: 189  NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
            N++I G+++    + +++   +M+    LPD  T+ S+L +C  L  L LGK V GF+++
Sbjct: 820  NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 879

Query: 249  NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
            N ++ + ++  +++ +Y  CG L   + +FDAM +K +V+WN +IT Y QNG  + A+ +
Sbjct: 880  NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 939

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC---------- 358
            F +M   G+    I+++ V  AC+ + +L LG+    YA +  L  D F           
Sbjct: 940  FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 999

Query: 359  -GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
             GSI  + KVF  +   +  SWNAMI     +G A EA+ LFE M + G    P+D+TF+
Sbjct: 1000 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTG--HNPDDLTFL 1057

Query: 418  GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV-ERMP 476
            GVL+AC H+GL+ EG R  D M SSFGL P  +HY+C++D+  RAG L +A   V E M 
Sbjct: 1058 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 1117

Query: 477  EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
            E+ D  +  +LL +C+  +N ++ ++V   L E+E     NYV+ S ++A L  W+D  K
Sbjct: 1118 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 1177

Query: 537  MRALMREKGVSKTPGCSWIGID 558
            +R  M E  + K  GCSWI ++
Sbjct: 1178 VRQRMNEMSLRKDAGCSWIELN 1199



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 215/429 (50%), Gaps = 31/429 (7%)

Query: 22  LLREKLLSLLKKCPSTKTVQ---QIHTQMLI--NFIQKPNFLLIRIIDLKDF----NYAS 72
           L+RE L  LL+     K ++   +IH Q++     ++  + L  RII +       + + 
Sbjct: 437 LVREALGLLLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSR 495

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISCAN 131
            +F  +   N + +N +I   +   + Y   L+ + +M     L PD+FTYP V  +CA 
Sbjct: 496 FVFDALRSKNLFQWNAVISSYSRN-ELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 554

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           +  +  G++VH  V K GL ED  V ++L++ Y   G +  A ++FD + ER+LVSWNSM
Sbjct: 555 MSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSM 614

Query: 192 ISGYSKMGYAKEAVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
           I  +S  G+++E+  L G M EE     F+PD  TLV+VL  C    ++ LGK V G+ V
Sbjct: 615 IRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV 674

Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
           K ++D    + +AL+DMY KCG +  A+ +F    NK+VV+WN M+  ++  G ++    
Sbjct: 675 KLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFD 734

Query: 308 LFNRMKYAG--VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
           +  +M   G  V  D++T++  +  C     L   K +  Y+ ++   ++          
Sbjct: 735 VLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVAS 794

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CGS+  A +VF  +      SWNA+I   A +     +L    +M   G    P+  
Sbjct: 795 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISG--LLPDSF 852

Query: 415 TFIGVLSAC 423
           T   +LSAC
Sbjct: 853 TVCSLLSAC 861



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 149/302 (49%), Gaps = 16/302 (5%)

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
           L  DD +   +ITMYA CG  D +R VFD +R ++L  WN++IS YS+     E +E F 
Sbjct: 471 LRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFI 530

Query: 210 RM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
            M    + LPD  T   V+ +C  + D+ +G  V G VVK  +  + ++G+AL+  YG  
Sbjct: 531 EMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTH 590

Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY----AGVNPDKITL 324
           G +  A ++FD M  +++V+WN+MI  ++ NG S E+ +L   M          PD  TL
Sbjct: 591 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATL 650

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPV 373
           + VL  CA    + LGK V  +A +  L  ++            CG I +A  +F+    
Sbjct: 651 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNN 710

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            N VSWN M+   +  G  H    +  +M   G   + ++VT +  +  C H   +   +
Sbjct: 711 KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK 770

Query: 434 RL 435
            L
Sbjct: 771 EL 772



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 171/357 (47%), Gaps = 25/357 (7%)

Query: 27   LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
            LLS   K  S +  +++H  ++ N++++  F+ + ++ L     +      LF  +   +
Sbjct: 857  LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKS 916

Query: 83   EYAFNVMIRG-LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
              ++N +I G L   +     +L ++ QM   G++    +   VF +C+ L +L  G   
Sbjct: 917  LVSWNTVITGYLQNGFP--DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 974

Query: 142  HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
            H+   K  L++D  ++ SLI MYA+ G +  + KVF+ ++E+   SWN+MI GY   G A
Sbjct: 975  HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 1034

Query: 202  KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMGSA 260
            KEA++LF  M+     PD++T + VL +C   G +  G ++++       +  N    + 
Sbjct: 1035 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 1094

Query: 261  LIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITA--YAQNGLSNEAIMLFNRMKYAG 316
            +IDM G+ G L  A RV    +++  DV  W +++++    QN    E +      +   
Sbjct: 1095 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA-KLFELEP 1153

Query: 317  VNPDKITLIGVLSACASIGALDLGKWVD-KYASQR----GLRHDIFCGSIDDALKVF 368
              P+   L+  L A        LGKW D +   QR     LR D  C  I+   KVF
Sbjct: 1154 EKPENYVLLSNLYA-------GLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 1203


>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 521

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 173/497 (34%), Positives = 268/497 (53%), Gaps = 22/497 (4%)

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I+ PN    N ++  LT +   +     LY Q+       +++T+     +C +  + + 
Sbjct: 18  ITNPNPQFLNPLLSQLTNSQNAF---FDLYNQILSHPFSHNHYTFTHALRACYSHHSRSK 74

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
            + +H+ + K G   D  + +SL+  Y     + SA  +F  I   D+VSW S++SG +K
Sbjct: 75  ALEIHAHLVKSGHYLDLFLQNSLLHFYLAHNDVVSASNLFRSIPSPDVVSWTSLVSGLAK 134

Query: 198 MGYAKEAVELFGRMREEEFL--PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLN 254
            G+  +A+  F  M  +  +  P+  TLV+ L +C  LG L LGK    + ++  + D N
Sbjct: 135 SGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALGLGKSAHAYGLRMLIFDGN 194

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
               +A++++Y KCGAL  A+ +FD +  +DVV+W  ++  YA+ G   EA  +F RM  
Sbjct: 195 VIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWTTLLMGYARGGYCEEAFAVFKRMVL 254

Query: 315 -AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG------------LRHDIFCGSI 361
            A   P++ T++ VLSA ASIGAL LG+WV  Y   R             L   + CG +
Sbjct: 255 NAEAEPNEATVVTVLSASASIGALSLGQWVHSYIDSRYDLVVDGNIENALLNMYVKCGDM 314

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
              L+VF+ +   + +SW  +I  LA NG   + L LF RM  E     P+DVTFIGVLS
Sbjct: 315 QMGLRVFDMIVHKDAISWGTVICGLAMNGYEKKTLELFSRMLVE--VVEPDDVTFIGVLS 372

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAGLV+EG   F  M   +G++P+  HY CMVD+Y RAG L EA  F+  MP + + 
Sbjct: 373 ACSHAGLVNEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAGLLEEAEAFLRSMPVEAEG 432

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
            + GALL AC+   N  +S+ +M   L+ +S   G   + S ++A+ + WDD+ K+R  M
Sbjct: 433 PIWGALLQACKIHGNEKMSEWIMG-HLKGKSVGVGTLALLSNMYASSERWDDANKVRKSM 491

Query: 542 REKGVSKTPGCSWIGID 558
           R   + K  GCSW+ ++
Sbjct: 492 RGTRLKKVAGCSWVELE 508


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 191/587 (32%), Positives = 298/587 (50%), Gaps = 42/587 (7%)

Query: 1   MLLRAKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI 60
           +LL+A+A ++ L         ++   LL   +K  S      +H  +L     K  FL  
Sbjct: 40  ILLKAQAQAQAL-------KPVVYASLLQACRKAHSFPLGTHLHAHVL-----KSGFLAD 87

Query: 61  RII----------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
           R +              F+ A  LF  +   +  A+  +I G     Q  + ++ L+ QM
Sbjct: 88  RFVANSLLSLYSKLSPHFSQARALFDALPFKDVIAWTSIISGHVQKAQPKT-AVHLFLQM 146

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV-SHSLITMYARCGK 169
               ++P+ FT   +  +C+ L  L+ G ++H+ VF  G   +++V + +LI MY R   
Sbjct: 147 LGQAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSRV 206

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF--LPDEITLVSVL 227
           +D ARKVFDE+ E D V W ++IS  ++    +EAV +F  M +       D  T  ++L
Sbjct: 207 VDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLL 266

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
            +CG+LG L +G+ V G VV   M  N ++ S+L+DMYGKCG +  AR VFD +  K+ V
Sbjct: 267 NACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEV 326

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
              AM+  Y  NG     + L    +      D  +   ++ AC+ + A+  G  V    
Sbjct: 327 ALTAMLGVYCHNGECGSVLGLVREWRSM---VDVYSFGTIIRACSGLAAVRQGNEVHCQY 383

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            +RG   D+            CGS+D A ++F  M   N ++WNAMI   A NGR  E +
Sbjct: 384 VRRGGWRDVVVESALVDLYAKCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGV 443

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
            LFE M KEG   RP+ ++F+ VL AC H GLVD+GRR FDLM   +G+ P   HY+CM+
Sbjct: 444 ELFEEMVKEG--VRPDWISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMI 501

Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
           D+  RA  + EA   +E    + D      LLGAC K  +   ++R+ + ++++E     
Sbjct: 502 DILGRAELIEEAESLLESADCRYDHSRWAVLLGACTKCSDYVTAERIAKKMIQLEPDFHL 561

Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
           +YV+   I+  +  W+++ ++R LM E+GV K PG SWI  +  K S
Sbjct: 562 SYVLLGNIYRAVGKWNEALEIRKLMEERGVKKVPGKSWIESEKQKGS 608


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 259/469 (55%), Gaps = 14/469 (2%)

Query: 101 SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSL 160
           S+ L L  Q+ +   + D+FT+  V  +   L  +  G  +HS V K     +  VS++L
Sbjct: 192 SNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNAL 251

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           +  Y++   +  ARK+FDE+ E+D VS+N +ISGY+  G  K A +LF  ++   F   +
Sbjct: 252 LDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQ 311

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
               ++L    +  D  +G+ +    +    D    +G++L+DMY KCG    A  +F  
Sbjct: 312 FPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTN 371

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           + ++  V W AMI+AY Q G   E + LFN+M+ A V  D+ T   +L A ASI +L LG
Sbjct: 372 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG 431

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K +  +  + G   ++F           CGSI DA++ F++MP  N VSWNAMISA A N
Sbjct: 432 KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQN 491

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           G A   L  F+ M   G   +P+ V+F+GVLSAC H+GLV+EG   F+ M+  + L P+ 
Sbjct: 492 GEAEATLKSFKEMVLSG--LQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 549

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
           EHY+ +VD+  R+G  +EA   +  MP   DEI+  ++L AC+  KN ++++R    L  
Sbjct: 550 EHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFN 609

Query: 510 IES-SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           +E   ++  YV  S I+A    W++ +K+   MR++GV K P  SW+ I
Sbjct: 610 MEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 658



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 194/368 (52%), Gaps = 30/368 (8%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIID--LKDFNY-------ASLLFHQISRPNEYAFNVMIR 91
           QQIH+     F+ K NF+    +   L DF         A  LF ++   +  ++NV+I 
Sbjct: 230 QQIHS-----FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 284

Query: 92  GLTTAWQ-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150
           G   AW  K+ ++  L+ +++        F +  +    +N L    G  +H+       
Sbjct: 285 GY--AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA 342

Query: 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210
           D +  V +SL+ MYA+CGK + A  +F  +  R  V W +MIS Y + G+ +E ++LF +
Sbjct: 343 DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNK 402

Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
           MR+   + D+ T  S+L +   +  L LGK +  F++K+    N + GSAL+D+Y KCG+
Sbjct: 403 MRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGS 462

Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
           +  A + F  M ++++V+WNAMI+AYAQNG +   +  F  M  +G+ PD ++ +GVLSA
Sbjct: 463 IKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSA 522

Query: 331 CASIGALDLGKW----------VDKYASQRGLRHDIFC--GSIDDALKVFEDMPV-TNEV 377
           C+  G ++ G W          +D          D+ C  G  ++A K+  +MP+  +E+
Sbjct: 523 CSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEI 582

Query: 378 SWNAMISA 385
            W+++++A
Sbjct: 583 MWSSVLNA 590



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 80/396 (20%)

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           +I+ Y + G L  ARK+FD + ER  V+W  +I GYS++   KEA ELF +M+     PD
Sbjct: 84  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 143

Query: 220 EITLVSVLGSCG--DLGD-----------------LVLGK-WVEGFVVKNKMDL------ 253
            +T V++L  C   ++G+                 L++G   V+ +   N++DL      
Sbjct: 144 YVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFK 203

Query: 254 ----------------------------------------NFYMGSALIDMYGKCGALVP 273
                                                   N ++ +AL+D Y K  +++ 
Sbjct: 204 EMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVID 263

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           AR++FD M  +D V++N +I+ YA +G    A  LF  +++   +  +     +LS  ++
Sbjct: 264 ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 323

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
               ++G+ +           +I            CG  ++A  +F ++   + V W AM
Sbjct: 324 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 383

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           ISA    G   E L LF +M +    A  +  TF  +L A      +  G++L   +  S
Sbjct: 384 ISAYVQKGFYEEGLQLFNKMRQASVIA--DQATFASLLRASASIASLSLGKQLHSFIIKS 441

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            G +      S ++D+YA+ G + +A    + MP++
Sbjct: 442 -GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR 476



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 35/163 (21%)

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE---------GGAA 409
           G +  A ++FE MP  N VS N MIS    +G   EA  LF+ M +          GG +
Sbjct: 61  GELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 120

Query: 410 R--------------------PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
           +                    P+ VTF+ +LS C    +   G ++  + +    L   S
Sbjct: 121 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEM---GNQITQVQTQIIKLGYDS 177

Query: 450 EHY--SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
                + +VD Y ++  L  A    + MPE +D     A+L A
Sbjct: 178 RLIVGNTLVDSYCKSNRLDLACQLFKEMPE-IDSFTFAAVLCA 219


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 282/545 (51%), Gaps = 30/545 (5%)

Query: 41  QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           +Q+H+ ++     N +   N +L   I  KDFNYA  LF ++   N   +N +I GL   
Sbjct: 8   KQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVDC 67

Query: 97  -WQKYSHSLKL---YYQ---MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
               Y  S+ +   Y++   + ++G   D  T   +  +C  L  +  G  +H  + K+G
Sbjct: 68  RGSDYESSVYMGFCYFRKMLLDKVGF--DAITLNGLLRACLELNDVEIGRELHCFIVKLG 125

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
              +  V+ +L+ +Y +CG +  AR+ FDE+  RDLV WN M+S Y+    A+EA   F 
Sbjct: 126 FAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFK 185

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
            M+EE F+ D  T  S+L SCG LG   LG+ + G  +K   DL+  + S L+DMY K  
Sbjct: 186 LMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSE 245

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
            +  AR+ FD M  ++VV+WN M+  Y + G   EA+ L   M    + PD+ITL  ++ 
Sbjct: 246 NIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIR 305

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVS 378
           +C+S         V+ Y  + G    +             GSI  AL+ F  +   + V+
Sbjct: 306 SCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCFNTVLEPDLVT 365

Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
           W ++I A AF+     ++  FE M  +G    P+ + F+ VLSAC HAGLV+EG   F L
Sbjct: 366 WTSLIGAYAFHSLPKNSIDTFEEMLADG--VWPDQIVFLEVLSACSHAGLVNEGLHYFSL 423

Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
           M   + ++P  EHY+C++DL  RAG L EA++ +  M        LGA +GAC+   +  
Sbjct: 424 M-KDYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGACKIHGDVK 482

Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI--- 555
           +++   + L E+E +   NY + S +FA+   W D A++  LMR++     PGCSW+   
Sbjct: 483 LAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVARIHKLMRDRCGHGVPGCSWMEYA 542

Query: 556 GIDDP 560
           G  DP
Sbjct: 543 GDRDP 547



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 29/314 (9%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G  VHS V K+G      + + ++ +Y +C   + A ++FDE+  R++V+WN++I G
Sbjct: 4   LREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICG 63

Query: 195 YSK-----------MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
                         MG+       F +M  ++   D ITL  +L +C +L D+ +G+ + 
Sbjct: 64  LVDCRGSDYESSVYMGFC-----YFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELH 118

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
            F+VK    +N ++ SAL+D+YGKCG +  ARR FD +  +D+V WN M++ YA N L+ 
Sbjct: 119 CFIVKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAE 178

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS--- 360
           EA   F  M+      D  T   +L++C ++G+ +LG+ +   + +     D+   S   
Sbjct: 179 EASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLV 238

Query: 361 --------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                   IDDA K F+ M   N VSWN M+      G   EA+ L   M +E    RP+
Sbjct: 239 DMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQED--LRPD 296

Query: 413 DVTFIGVLSACVHA 426
           ++T   ++ +C  A
Sbjct: 297 EITLASIIRSCSSA 310


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/515 (33%), Positives = 285/515 (55%), Gaps = 18/515 (3%)

Query: 56   NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
            N LL       D   +  +F +I++ N  ++  MI       +    +L+ + +M + G+
Sbjct: 799  NSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRG-EFSEKALRSFSEMLKSGI 857

Query: 116  KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYARCGKLDSAR 174
            +P+  T   +  SC     +  G SVH    +  LD + + +S +L+ +YA CG+L    
Sbjct: 858  EPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCE 917

Query: 175  KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
             +   + +R++V WNS IS Y+  G   EA+ LF +M      PD  TL S++ +C + G
Sbjct: 918  TILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTG 977

Query: 235  DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
             + LGK + G V++  +   F   S +IDMY K G +  A  VFD + ++ +VTWN+M+ 
Sbjct: 978  LVRLGKQIHGHVIRTDVSDEFVQNS-VIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLC 1036

Query: 295  AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
             ++QNG S EAI LF+ M ++ +  +K+T + V+ AC+SIG+L+ G+WV       G++ 
Sbjct: 1037 GFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIK- 1095

Query: 355  DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
            D+F           CG ++ A  VF  M   + VSW++MI+A   +GR   A+  F +M 
Sbjct: 1096 DLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMV 1155

Query: 404  KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
            + G   +PN+V F+ VLSAC H+G V+EG+  F+LM   FG+ P SEH++C +DL +R+G
Sbjct: 1156 ESG--TKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKL-FGVSPNSEHFACFIDLLSRSG 1212

Query: 464  HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
             L EA+  ++ MP   D  V G+L+  C+  +  D+ + +   + +I + ++G Y + S 
Sbjct: 1213 DLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDISDIVTDDTGYYTLLSN 1272

Query: 524  IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
            I+A    W++  +MR+ M+   + K PG S I ID
Sbjct: 1273 IYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEID 1307



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 221/429 (51%), Gaps = 23/429 (5%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKDF----NYASLLFHQISR 80
           + + L + C S + V Q+H  +L+   +++    + ++I+   F    + + L+F     
Sbjct: 561 QYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPY 620

Query: 81  PNEYAFNVMIRGLTTAW-QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA-LNHG 138
           P+ + + V+I+     W      ++ LY+++     +   F +P V  +CA     L+ G
Sbjct: 621 PDSFMYGVLIK--CNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVG 678

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             VH  + K G+D+D  +  SL+ MY + G L  A KVFD +  RDLV+W++++S   + 
Sbjct: 679 RKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLEN 738

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
               +A+ +F  M ++   PD +T++SV+  C +LG L + + V G + +   D +  + 
Sbjct: 739 CEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLC 798

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L+ MY KCG L+ + ++F+ +  K+ V+W AMI++Y +   S +A+  F+ M  +G+ 
Sbjct: 799 NSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIE 858

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI------------FCGSIDDALK 366
           P+ +TL  +LS+C   G +  GK V  +A +R L  +              CG + D   
Sbjct: 859 PNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCET 918

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +   +   N V WN+ IS  A  G   EAL LF +M       +P+  T   ++SAC + 
Sbjct: 919 ILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVT--WRIKPDSFTLASIISACENT 976

Query: 427 GLVDEGRRL 435
           GLV  G+++
Sbjct: 977 GLVRLGKQI 985


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 172/556 (30%), Positives = 296/556 (53%), Gaps = 29/556 (5%)

Query: 28  LSLLKKCPSTK---TVQQIHTQML-INFIQKPNFLLIRIIDLKD----FNYASLLFHQIS 79
           ++ L++C   K   + QQIH  M+   F+      +  ++++         A L+F    
Sbjct: 63  IATLQRCAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFGGSE 122

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           R + + +N +I G          ++ +Y +M+  G+ PD +T+P   +  ++ + ++   
Sbjct: 123 R-DVFGYNALISGFVVNGSPLD-AMDMYREMRAKGILPDKYTFP-SLLKGSDAMEVSDVK 179

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD-LVSWNSMISGYSKM 198
            VH+  FK+G   D +V  +L+T Y++   ++ A+KVFDE+ +RD  V WN++++GYS +
Sbjct: 180 KVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHI 239

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
              ++A+ +F +MREE       T+ SVL S    GDL  G+ + G  VK   D    + 
Sbjct: 240 FRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVS 299

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           +ALID+YGK   L  A  +F+AM  +D+ TWN+++  +   G  +  + LF  M  +G+ 
Sbjct: 300 NALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIR 359

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKY---------ASQRGLRHD------IFCGSIDD 363
           PD +TL  VL  C  + +L  G+ +  Y          S  G  H+      + CG + D
Sbjct: 360 PDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRD 419

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A  VF+ M V +  SWN MI+          AL +F  M + G   +P+++TF+G+L AC
Sbjct: 420 ARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAG--VKPDEITFVGLLQAC 477

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            H+G V+EGR     M + + ++P S+HY+C++D+  RA  L EA+D    MP   + +V
Sbjct: 478 SHSGFVNEGRNFLAQMETLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPICDNPVV 537

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
             ++L +C+   N D++    + L E+E  + G YV+ S ++   K +++   +R  M+E
Sbjct: 538 WRSILSSCRLHGNKDLAVVAGKRLYELEPEHCGVYVLMSNVYVEAKKYEEVLDVRDTMKE 597

Query: 544 KGVSKTPGCSWIGIDD 559
           + V KTPGCSWIG+ +
Sbjct: 598 QNVKKTPGCSWIGLQN 613


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 169/501 (33%), Positives = 269/501 (53%), Gaps = 18/501 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLGLKPDNFTYPFVFISC 129
           A  +F ++   +   +N MI G     + Y  S++++  +      + D  T   +  + 
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKN-EMYVESIQVFRDLINESCTRLDTTTLLDILPAV 231

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A L  L  G+ +HS   K G    D+V    I++Y++CGK+  A  +F E R  D+V++N
Sbjct: 232 AELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYN 291

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           +MI GY+  G  + ++ LF  +          TLVS++   G L   +L   + G+ +K+
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHL---MLIYAIHGYSLKS 348

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
               +  + +AL  +Y K   +  AR++FD    K + +WNAMI+ Y QNGL+ +AI LF
Sbjct: 349 NFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLF 408

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+ +  +P+ +T+  +LSACA +GAL LGKWV            I+           C
Sbjct: 409 REMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKC 468

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GSI +A ++F+ MP  NEV+WN MIS    +G   EAL +F  M   G A  P  VTF+ 
Sbjct: 469 GSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIA--PTPVTFLC 526

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VL AC HAGLV EG  +F+ M   +G  P  +HY+C+VD+  RAGHL  A  F+E MP +
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQ 586

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
               V   LLGAC+  K+T++++ V + L E++  N G +V+ S I +  + +  +A +R
Sbjct: 587 PGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVR 646

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
              +++ ++K PG + I I +
Sbjct: 647 QTAKKRKLAKAPGYTLIEIGE 667



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 219/431 (50%), Gaps = 31/431 (7%)

Query: 14  FTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKP------NFLLIRIIDLKD 67
           F +L + S  R    +LL   P+   +Q++   M I+ +         +++L   I L  
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query: 68  ----FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
                  AS LF +  RP+  A+N MI G T+  +    SL L+ ++   G K  + T  
Sbjct: 268 KCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGET-ELSLSLFKELMLSGAKLKSSTLV 326

Query: 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183
            +     +L+ +    ++H    K        VS +L T+Y++  +++SARK+FDE  E+
Sbjct: 327 SLVPVSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEK 383

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
            L SWN+MISGY++ G  ++A+ LF  M+  EF P+ +T+  +L +C  LG L LGKWV 
Sbjct: 384 SLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVH 443

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
             V     + + Y+ +ALI MY KCG++  ARR+FD M  K+ VTWN MI+ Y  +G   
Sbjct: 444 DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQ 503

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH---- 354
           EA+ +F+ M  +G+ P  +T + VL AC+  G +  G       + +Y  +  ++H    
Sbjct: 504 EALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACV 563

Query: 355 -DIF--CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
            DI    G +  AL+  E MP+    S W  ++ A     R H+   L   +S++     
Sbjct: 564 VDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGAC----RIHKDTNLARTVSEKLFELD 619

Query: 411 PNDVTFIGVLS 421
           P++V +  +LS
Sbjct: 620 PDNVGYHVLLS 630



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 227/472 (48%), Gaps = 24/472 (5%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI----RIIDLKDFNYASLLFHQIS 79
           +   L L K+  S   + Q H Q++++  +    LL     R+ DL    YA  +F  + 
Sbjct: 20  KNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQ 79

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHG 138
           RP+ + FNV++RG +     +S SL ++  +++   LKP++ TY F   + +       G
Sbjct: 80  RPDVFLFNVLMRGFSVNESPHS-SLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAG 138

Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
             +H      G D +  +  +++ MY +  +++ ARKVFD + E+D + WN+MISGY K 
Sbjct: 139 CVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198

Query: 199 GYAKEAVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
               E++++F  +  E     D  TL+ +L +  +L +L LG  +     K     + Y+
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            +  I +Y KCG +  A  +F      D+V +NAMI  Y  NG +  ++ LF  +  +G 
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 318 NPDKITLI------GVLSACASIGALDLGKWVDKYASQRGLRHDIFC--GSIDDALKVFE 369
                TL+      G L    +I    L      + S       ++     I+ A K+F+
Sbjct: 319 KLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFD 378

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
           + P  +  SWNAMIS    NG   +A+ LF  M  +     PN VT   +LSAC   G +
Sbjct: 379 ESPEKSLPSWNAMISGYTQNGLTEDAISLFREM--QNSEFSPNPVTITCILSACAQLGAL 436

Query: 430 DEGRRLFDLM-SSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDFVERMPEK 478
             G+ + DL+ S+ F    +S  Y  + ++ +YA+ G ++EA    + MP+K
Sbjct: 437 SLGKWVHDLVRSTDF----ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK 484


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 257/452 (56%), Gaps = 12/452 (2%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +PD+ T+     +CA L  L  G SV    F  G  +D  V  SL+ +YAR G +  A K
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF  +  RD V+W++M++G+   G   +A++++ RMRE+    DE+ ++ V+ +C    +
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARN 224

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G  V G ++++ M ++    ++L+DMY K G L  A RVF  MV+++ V+W+AMI+ 
Sbjct: 225 VRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISG 284

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR----- 350
           +AQNG S+EA+ LF  M+ +G+ PD   L+  L AC++IG L LG+ V  +  +R     
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNC 344

Query: 351 ---GLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
                  D++  CGS+  A  +F  +   + + WNAMI+    +GR  +AL LF+ M++ 
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   RP+  TF  +LSA  H+GLV+EG+  F  M + F + P  +HY C+VDL AR+G +
Sbjct: 405 G--MRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLV 462

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA D +  M  +    +  ALL  C   K  ++ + +   +LE++  + G   + S ++
Sbjct: 463 EEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLY 522

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           A  K WD   ++R LM++ G  K PGCS I I
Sbjct: 523 AATKKWDKVRQVRKLMKDSGSKKMPGCSSIEI 554



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 28/365 (7%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++ R +   ++ M+ G  +A Q    ++++Y +M+  G+K D      V  +C    
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLD-AIQMYRRMREDGVKGDEVVMIGVIQACTAAR 223

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            +  G SVH  + + G+  D   + SL+ MYA+ G LD A +VF  +  R+ VSW++MIS
Sbjct: 224 NVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMIS 283

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           G+++ G + EA+ LF  M+     PD   LVS L +C ++G L LG+ V GF+V+ + D 
Sbjct: 284 GFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR-RFDF 342

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N  +G+A IDMY KCG+L  A+ +F+ + ++D++ WNAMI     +G   +A+ LF  M 
Sbjct: 343 NCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMN 402

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGK-WVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372
             G+ PD  T   +LSA +  G ++ GK W  +  +                   F+  P
Sbjct: 403 ETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNH------------------FKITP 444

Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
              E  +  ++  LA +G   EA  L   M  E     P    ++ +LS C++   ++ G
Sbjct: 445 A--EKHYVCLVDLLARSGLVEEASDLLTSMKAE-----PTVAIWVALLSGCLNNKKLELG 497

Query: 433 RRLFD 437
             + D
Sbjct: 498 ESIAD 502



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 44/236 (18%)

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           +++ G    A+ +F  +  A   PD  T    LSACA +G L  G+ V   A   G + D
Sbjct: 84  HSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 356 IFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +F            G++ DA+KVF  MP  + V+W+ M++     G+  +A+ ++ RM +
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 405 EGGAARPNDVTFIGVLSAC-----------VHAGLVDEGRR-----------------LF 436
           +G   + ++V  IGV+ AC           VH  L+  G R                 L 
Sbjct: 203 DG--VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 437 DLMSSSFGLIPKSE--HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           D+    FGL+       +S M+  +A+ G   EA      M     +   GAL+ A
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSA 316


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 279/531 (52%), Gaps = 53/531 (9%)

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
           +L  H    PN + +N +I   ++   K   S  LY  +   G  PD  T  ++ +   N
Sbjct: 21  TLFNHFTPNPNLFIYNTLISAFSSL--KKIESFYLYNVLLSSGECPDKQTLLYL-LQAVN 77

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
            ++      +H      GL    ++ ++LI +Y   G +  A +VF+++   D+VS+N M
Sbjct: 78  FIS--QVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVM 135

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           I GY+K G+  EA+ LF  M      PDE T++ +L SCG LG++  GK V G++ + K 
Sbjct: 136 IVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKP 195

Query: 252 DL--NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
            +  N  +G+AL+DMY KC  +  A R F A+  KD+V+WN ++   A+ G   +A + F
Sbjct: 196 TISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFF 255

Query: 310 NRMK-------------------YAGVN------------PDKITLIGVLSACASIGALD 338
            +M                    +A V             PD +T+I ++SA    GALD
Sbjct: 256 YQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALD 315

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
            G+W   +  +  ++ D F           CGSI+ A +VF+++   +   W  MI+ LA
Sbjct: 316 QGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLA 375

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
           F+G   +AL LF  M ++     P+DVTF+ VLSAC H+GLVD+G ++F  M+  +G+ P
Sbjct: 376 FHGYGSKALELFSEMQED---VSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEP 431

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             EHY C+VDL AR+G LSEA D +++MP K    + GA+L ACQ Q + ++++   + L
Sbjct: 432 GVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASREL 491

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           L ++    G Y + S I+A    W  S K+R  M  +GV KT GCS + +D
Sbjct: 492 LNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVD 542



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 214/417 (51%), Gaps = 53/417 (12%)

Query: 24  REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI----S 79
           ++ LL LL+       V+QIH Q ++  +    +L   +I +   N    L HQ+     
Sbjct: 66  KQTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMP 125

Query: 80  RPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138
            P+  +FNVMI G   A + +   +++L+++M  LGL+PD FT   + +SC  L  +  G
Sbjct: 126 SPDIVSFNVMIVGY--AKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFG 183

Query: 139 VSVH----------SSVFKIG----------------------LDEDDHVSHSLITM-YA 165
            +VH          SS   +G                      L E D VS ++I    A
Sbjct: 184 KAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCA 243

Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
           + G+L+ AR  F ++  RD+VSWNS+++GY+  G      EL   M  E+ +PD +T++S
Sbjct: 244 KVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMIS 303

Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
           ++ +  + G L  G+W  G+V++ ++ L+ ++GSALIDMY KCG++  A RVF  +  KD
Sbjct: 304 LVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKD 363

Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-- 343
           V  W  MIT  A +G  ++A+ LF+ M+   V+PD +T + VLSAC+  G +D G  V  
Sbjct: 364 VTVWTTMITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFS 422

Query: 344 --DKYASQRGLRH-----DIFC--GSIDDALKVFEDMPVTNEVS-WNAMISALAFNG 390
               Y  + G+ H     D+    G + +A  + + MP+    S W AM++A    G
Sbjct: 423 SMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQG 479


>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 164/432 (37%), Positives = 244/432 (56%), Gaps = 19/432 (4%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H+ + +  L + + +    I++     K+  A  VF + +  +L+ +NSMI GYS  G 
Sbjct: 28  IHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGP 87

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
           ++ ++ LF +M+     PDE T   +L SC  + D  +GK V G V+    +    +   
Sbjct: 88  SENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIG 147

Query: 261 LIDMYGKCGALVPARRVFDAMVNKD-----VVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
           +ID+Y  CG +  A++VFD M+++D     VV+WN+MI    Q+G   EA+ LF  M   
Sbjct: 148 IIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDH 207

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------------CGSIDD 363
           G  PD  T++ +L  CA +GA+D+G+W+  YA    L  D              CG ++ 
Sbjct: 208 GFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILET 267

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A +VF +MP  N VSWNAMIS L FNG+      LFE M  +G   RPND TF+GVLS C
Sbjct: 268 AWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKG--VRPNDATFVGVLSCC 325

Query: 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
            HAGLV+ GR LF  M+    + PK EH+ CMVDL AR G + EA D V  MP + + ++
Sbjct: 326 AHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVL 385

Query: 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543
            G+LL A +   +   ++  ++ L+E+E  NSGNYV+ S ++A    WD+  K+RALM+E
Sbjct: 386 WGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKE 445

Query: 544 KGVSKTPGCSWI 555
           K + K PG S +
Sbjct: 446 KNIRKNPGQSMV 457



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 153/476 (32%), Positives = 232/476 (48%), Gaps = 62/476 (13%)

Query: 22  LLREKLLSLLKKCPSTKT---VQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLL 74
           + RE    +L+     KT   + QIH  +L + + + N +L   I     L    YA+L+
Sbjct: 4   VCREAERRILRHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLV 63

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           FHQ   PN   FN MI+G +       +SL L+ QMK  G+ PD FT+  +  SC+ +  
Sbjct: 64  FHQTQNPNLLLFNSMIKGYSLC-GPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICD 122

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE-----IRERDLVSWN 189
              G  VH  V  +G +    +   +I +Y  CG+++ A+KVFDE     +R+R +VSWN
Sbjct: 123 NRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWN 182

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SMI+G  + G   EA+ELF  M +  F PD+ T+V++L  C  LG + +G+W+  +   +
Sbjct: 183 SMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESS 242

Query: 250 KMDLNFY-MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           ++  +F  +G++L+D Y KCG L  A RVF+ M  K+VV+WNAMI+    NG       L
Sbjct: 243 RLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADL 302

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368
           F  M   GV P+  T +GVLS CA  G ++ G+                         +F
Sbjct: 303 FEEMINKGVRPNDATFVGVLSCCAHAGLVERGR------------------------NLF 338

Query: 369 EDMPVTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
             M V +++      +  M+  LA NG   EA  L   M       RPN V +  +LSA 
Sbjct: 339 TSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTM-----PMRPNAVLWGSLLSAY 393

Query: 424 VHAGLVDEG----RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
              G V       + L +L   + G      +Y  + ++YA  G     WD VE++
Sbjct: 394 RTIGDVKHAECAVKELIELEPWNSG------NYVLLSNVYAEDG----KWDEVEKV 439


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 248/446 (55%), Gaps = 13/446 (2%)

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           + +SCA+       +   S    + L   D   + + T+ + C  +  A ++F +I+  +
Sbjct: 45  LLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPN 104

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
           + +WN+MI GY++      A+EL+ +M      PD  T   +L +   L D+  G+ V  
Sbjct: 105 IFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHS 164

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
             ++N  +   ++ + L+ MY  CG    A ++F+ M  +++VTWN++I  YA NG  NE
Sbjct: 165 IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNE 224

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A+ LF  M   GV PD  T++ +LSACA +GAL LG+    Y  + GL  ++        
Sbjct: 225 ALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLD 284

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CGSI  A KVF++M   + VSW ++I  LA NG   EAL LF+ + ++G    P++
Sbjct: 285 LYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKG--LMPSE 342

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
           +TF+GVL AC H G+VDEG   F  M   +G++PK EHY CMVDL  RAG + +A +F++
Sbjct: 343 ITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQ 402

Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            MP + + +V   LLGAC    +  + +     LL++E  +SG+YV+ S ++A+ + W D
Sbjct: 403 NMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSD 462

Query: 534 SAKMRALMREKGVSKTPGCSWIGIDD 559
             K+R  M  +GV KTPG S + + +
Sbjct: 463 VHKVRRTMLREGVKKTPGHSLVELRN 488



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 223/416 (53%), Gaps = 27/416 (6%)

Query: 2   LLRAKAYSRHLAFT------ELNDPSLLREKLLSLLKKCPSTK-TVQQIHTQMLINFIQK 54
           L+   +  +H +FT        +  S + +K ++LL  C S+K   +QIH   + + +  
Sbjct: 11  LIPTHSPRKHFSFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPL 70

Query: 55  PN-----FLLIRIIDL-KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYY 108
            N     +L+  ++      +YA  +F QI  PN + +N MIRG   +      +L+LY 
Sbjct: 71  TNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMP-ALELYR 129

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           QM    ++PD  TYPF+  + A L+ +  G  VHS   + G +    V ++L+ MYA CG
Sbjct: 130 QMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG 189

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
             +SA K+F+ + ER+LV+WNS+I+GY+  G   EA+ LF  M      PD  T+VS+L 
Sbjct: 190 HAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLS 249

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           +C +LG L LG+    ++VK  +D N + G+AL+D+Y KCG++  A +VFD M  K VV+
Sbjct: 250 ACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVS 309

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG-----KWV 343
           W ++I   A NG   EA+ LF  ++  G+ P +IT +GVL AC+  G +D G     +  
Sbjct: 310 WTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMK 369

Query: 344 DKYASQRGLRH-----DIF--CGSIDDALKVFEDMPV-TNEVSWNAMISALAFNGR 391
           ++Y     + H     D+    G +  A +  ++MP+  N V W  ++ A   +G 
Sbjct: 370 EEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 173/489 (35%), Positives = 271/489 (55%), Gaps = 21/489 (4%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNF-----LLIRIIDLKDFNYASLLFHQISRPNEY 84
           L++  P   +  Q H   L   +  PN      L+   +       A  +F ++   +  
Sbjct: 75  LVRAAPGPASAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVP 134

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           A+N M+ GL    +    ++ L+ +M   G+  D  T   V   C  L      + +H  
Sbjct: 135 AWNAMLSGLCRNARAVD-AVALFGRMVGEGVAGDAVTLSSVLPMCVLLGDRALALVMHVY 193

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             K GL  +  V ++LI +Y + G L  AR VF  +  RDLV+WNS+IS Y + G    A
Sbjct: 194 AVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAA 253

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALID 263
           VELF  M +    PD +TLVS+  +    GD    K V  +V +   D+ +   G+A++D
Sbjct: 254 VELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVD 313

Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-YAGVNPDKI 322
           MY K   +  A+ VFD + ++DVV+WN +IT Y QNGLSNEA+ ++N M+ + G+ P + 
Sbjct: 314 MYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQG 373

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
           T + +L A +++GAL  G  +   + + GL  D++           CG + +A+ +FE M
Sbjct: 374 TFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHM 433

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P  +   WNA+I+ L  +G   +AL LF +M +EG   +P++VTF+ +L+AC HAGLVD+
Sbjct: 434 PRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEG--IKPDNVTFVSLLAACSHAGLVDQ 491

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           GR  FDLM + +G++P ++HY+CMVD+  RAG L EA++F++ MP K D  V GALLGAC
Sbjct: 492 GRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGAC 551

Query: 492 QKQKNTDVS 500
           +   N +++
Sbjct: 552 RIHGNVELA 560



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 204/377 (54%), Gaps = 18/377 (4%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL-DEDDHVSHSLITMYARCGKLDSA 173
           L+PD+FT+P +  +     +       H+   ++GL   +   S SL+  Y R G++  A
Sbjct: 65  LRPDSFTFPPLVRAAPGPAS---AAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
            +VFDE+ ERD+ +WN+M+SG  +   A +AV LFGRM  E    D +TL SVL  C  L
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLL 181

Query: 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMI 293
           GD  L   +  + VK  +    ++ +ALID+YGK G LV AR VF  M  +D+VTWN++I
Sbjct: 182 GDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSII 241

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           +AY Q G    A+ LF+ M  +GV+PD +TL+ + SA A  G     K V  Y  +RG  
Sbjct: 242 SAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWD 301

Query: 354 -HDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             DI  G+           ID A  VF+++P  + VSWN +I+    NG ++EA+ ++  
Sbjct: 302 VGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYND 361

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M    G  +P   TF+ +L A  + G + +G R+  L S   GL       +C++DLYA+
Sbjct: 362 MQNHEG-LKPIQGTFVSILPAYSNLGALQQGMRMHAL-SIKTGLNLDVYVSTCLIDLYAK 419

Query: 462 AGHLSEAWDFVERMPEK 478
            G L EA    E MP +
Sbjct: 420 CGKLVEAMLLFEHMPRR 436


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 275/563 (48%), Gaps = 92/563 (16%)

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL----GLKPDNFTYPFVFISCANL--LA 134
           P      V+   + +A+ + SH+       + L     L+PD++++  +  +  +L  ++
Sbjct: 115 PQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNIS 174

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS---ARKVFDEIRERDL------ 185
           + H   +  SV K G      VS++L+ +Y +C  L++   ARKV DE+ ++D       
Sbjct: 175 VRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTM 234

Query: 186 -------------------------VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
                                    V WN+MISGY   G   EA ELF RM  E    DE
Sbjct: 235 VVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDE 294

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY------MGSALIDMYGKCGALVPA 274
            T  SVL +C + G    GK V G +   ++  NF       + +AL+ +Y KCG +  A
Sbjct: 295 FTFTSVLSACANAGFFAHGKSVHGQI--TRLQPNFVPEAALPVNNALVTLYSKCGNIAVA 352

Query: 275 RRVFDAMVNKDVVTWNA-------------------------------MITAYAQNGLSN 303
           RR+FD M +KDVV+WN                                M++ Y   G S 
Sbjct: 353 RRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSE 412

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-------- 355
           +A+ LFNRM+   V P   T  G +SAC  +G+L  GK +  +  Q G            
Sbjct: 413 DALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALI 472

Query: 356 ---IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
                CG++ +A  +F  MP  + VSWNAMISAL  +G   EAL LF+RM  EG    P+
Sbjct: 473 TMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG--IYPD 530

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
            ++F+ VL+AC H+GLVDEG + F+ M   FG+IP  +HY+ ++DL  RAG + EA D +
Sbjct: 531 RISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLI 590

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
           + MP +    +  A+L  C+   + ++       L ++   + G Y++ S  ++    W 
Sbjct: 591 KTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWV 650

Query: 533 DSAKMRALMREKGVSKTPGCSWI 555
           D+A++R LMR++GV K PGCSWI
Sbjct: 651 DAARVRKLMRDRGVKKEPGCSWI 673



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 229/492 (46%), Gaps = 89/492 (18%)

Query: 27  LLSLLKKCPS---TKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNE 83
           L++L  KC +   T+  +++  +M          +++  +   D   A  +F ++    +
Sbjct: 200 LVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFD 259

Query: 84  YAFNVMIRGLTTAWQKYSHS------LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
             +N MI G       Y HS       +L+ +M    +  D FT+  V  +CAN     H
Sbjct: 260 VVWNAMISG-------YVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAH 312

Query: 138 GVSVHSSVFKIGLDEDDH----VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS--- 190
           G SVH  + ++  +        V+++L+T+Y++CG +  AR++FD ++ +D+VSWN+   
Sbjct: 313 GKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILS 372

Query: 191 ----------------------------MISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
                                       M+SGY   G++++A++LF RMR E+  P + T
Sbjct: 373 GYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYT 432

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
               + +CG+LG L  GK + G +V+   + +   G+ALI MY +CGA+  A  +F  M 
Sbjct: 433 YAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           N D V+WNAMI+A  Q+G   EA+ LF+RM   G+ PD+I+ + VL+AC           
Sbjct: 493 NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTAC----------- 541

Query: 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMP-----VTNEVSWNAMISALAFNGRAHEALL 397
                +  GL        +D+  + FE M      +  E  +  +I  L   GR  EA  
Sbjct: 542 -----NHSGL--------VDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARD 588

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMV 456
           L + M  E     P    +  +LS C  +G ++ G    D +   F + P+ +  Y  + 
Sbjct: 589 LIKTMPFE-----PTPSIWEAILSGCRTSGDMELGAHAADQL---FKMTPQHDGTYILLS 640

Query: 457 DLYARAGHLSEA 468
           + Y+ AG   +A
Sbjct: 641 NTYSAAGRWVDA 652



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 197/456 (43%), Gaps = 95/456 (20%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
           +P + +   +L  L+  +   +++F+   D     + SL+  YA  G+L +A   FD + 
Sbjct: 58  HPHLTLRLIHLYTLSGDLPAAATLFRA--DPCPVAATSLVAAYAAAGRLPAAVSFFDAVP 115

Query: 182 E--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVL 238
           +  RD V  N++IS Y++  +A  AV +F  +     L PD+ +  ++L + G L ++ +
Sbjct: 116 QARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISV 175

Query: 239 GK--WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP---ARRVFDAMVNKDVVT----- 288
                ++  V+K+       + +AL+ +Y KC AL     AR+V D M +KD +T     
Sbjct: 176 RHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMV 235

Query: 289 --------------------------WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
                                     WNAMI+ Y  +G+  EA  LF RM    V  D+ 
Sbjct: 236 VGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEF 295

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------------CGSI---- 361
           T   VLSACA+ G    GK V    ++  L+ +                   CG+I    
Sbjct: 296 TFTSVLSACANAGFFAHGKSVHGQITR--LQPNFVPEAALPVNNALVTLYSKCGNIAVAR 353

Query: 362 ---------------------------DDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
                                      D A++VFE+MP  NE+SW  M+S     G + +
Sbjct: 354 RIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSED 413

Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
           AL LF RM  E    +P D T+ G +SAC   G +  G++L   +    G    +   + 
Sbjct: 414 ALKLFNRMRAED--VKPCDYTYAGAISACGELGSLKHGKQLHGHL-VQLGFEGSNSAGNA 470

Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           ++ +YAR G + EA      MP  +D +   A++ A
Sbjct: 471 LITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISA 505


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 251/453 (55%), Gaps = 30/453 (6%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMI 192
           L  G +VH  V K G     H+ +S++ MY+ C  +  A +VF+   I +RD+VSWNS+I
Sbjct: 181 LRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 193 SGYSKMGYAKEAVELFGRMREE---EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SG++  G A+ A+  F  M  E      P+ +T++++L SC +LG +    WV  ++   
Sbjct: 241 SGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 250 KMDL----NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
              L    +  + +AL+DM+ +CG L  AR +FD +  K+VV W+AMI  Y Q     EA
Sbjct: 301 HSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 306 IMLFNRMKYAG------VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           + LF +M   G      V P+ +TL+ V++AC+ +GA      + KYA   GL  D    
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIA 420

Query: 358 ---------CGSIDDALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEG 406
                    CG I+   +VF +M  +    VSW++MI A   +G    AL LF  M    
Sbjct: 421 SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT-- 478

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
           G   PN++T+I VLSAC HAGLV++G+  F+ M   +G+ P  +HY+C+VDL  RAGHL 
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           EA + +  MP K D  + G+LL AC    N  + + V + +L ++S++ G++V+ + ++ 
Sbjct: 539 EAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYE 598

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +   WDD  +MR  +R  G+ K PG S+I I +
Sbjct: 599 DAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGN 631



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 216/443 (48%), Gaps = 39/443 (8%)

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            IS  + + +N +I     A Q    +L  + +M+   +  +NFT+P +  +CA L  L 
Sbjct: 12  SISHKDTFHWNSLI--AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER--DLVSWNSMISG 194
             + VH+ + ++GL  D   + +L+  Y +CG    A +VFDE+ E   D+VSW ++IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 195 YSKMGYAKEAVELFGRMR-------EEEFLPDEITLVSVLGSCG-DLGDLVL--GKWVEG 244
           YS  G   EA + FGRMR        E    D ++L +++ +C    G   L  G  V G
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLS 302
            VVK    ++ ++G++++ MY  C  +  A RVF+ +    +DVV+WN++I+ +  NG +
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 303 NEAIMLFNRMKYAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG----LRHD 355
             A+  F  M   G   V P+++T+I +L +CA +G ++   WV +Y S R     +  D
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG++  A ++F+ +   N V W+AMI+         EAL LF +M  
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 405 EGG----AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
           EG       +PN VT + V++AC   G       +    + + GL   +   S ++D+ A
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDMCA 428

Query: 461 RAGHLSEAWDFVERMPEKVDEIV 483
           + G +         M E    +V
Sbjct: 429 KCGDIEHGRQVFSEMDESTRTVV 451



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 12/187 (6%)

Query: 27  LLSLLKKCP---STKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L+S++  C    ++++   IH   +   + +   +   +ID+     D  +   +F ++ 
Sbjct: 385 LVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD 444

Query: 80  RPNE--YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
                  +++ MI G      +   +L+L+ +M+  G +P+  TY  V  +C++   +  
Sbjct: 445 ESTRTVVSWSSMI-GAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 138 GVSVHSSVFK-IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-ERDLVSWNSMISGY 195
           G S  +S+ K  G+         L+ +  R G LD A  V   +  + DL  W S+++  
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAAC 563

Query: 196 SKMGYAK 202
              G  K
Sbjct: 564 HLHGNCK 570


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 277/486 (56%), Gaps = 15/486 (3%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N ++ GL    + YS +L  +  M+  G KPD  +   +  +      L  G  VH+ 
Sbjct: 316 SWNTLLSGLVQN-ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAY 374

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             + GLD +  + ++L+ MYA+C  +      F+ + E+DL+SW ++I+GY++  +  EA
Sbjct: 375 AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEA 434

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + LF +++ +    D + + SVL +C  L      + + G+V K  +  +  + +A++++
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNV 493

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           YG+ G +  ARR F+++ +KD+V+W +MIT    NGL  EA+ LF  +K   + PD I +
Sbjct: 494 YGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAI 553

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGL---------RHDIF--CGSIDDALKVFEDMPV 373
           I  LSA A++ +L  GK +  +  ++G            D++  CG+++++ K+F  +  
Sbjct: 554 ISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQ 613

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + + W +MI+A   +G  ++A+ LF++M+ +     P+ +TF+ +L AC H+GL+ EG+
Sbjct: 614 RDLILWTSMINANGMHGCGNKAIALFKKMTDQN--VIPDHITFLALLYACSHSGLMVEGK 671

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           R F++M   + L P  EHY+CMVDL +R+  L EA+ FV  MP K    +  ALLGAC  
Sbjct: 672 RFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHI 731

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             N ++ +   + LL+ ++ NSG Y + S IFA    W+D  ++R  M+  G+ K PGCS
Sbjct: 732 HSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCS 791

Query: 554 WIGIDD 559
           WI +D+
Sbjct: 792 WIEVDN 797



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 148/497 (29%), Positives = 240/497 (48%), Gaps = 49/497 (9%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII----- 63
           L+   L  PS L      LL  C + K +   QQ+H  +L + +    FL  +++     
Sbjct: 34  LSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGK 91

Query: 64  --DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
              L+D   A  +F ++S    +++N ++    ++  KY  +++LY  M+ LG+  D  T
Sbjct: 92  CGSLRD---AVKVFDEMSERTIFSWNALMGAFVSS-GKYLEAIELYKDMRVLGVAIDACT 147

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI- 180
           +P V  +C  L     G  +H    K G  E   V ++LI MY +CG L  AR +FD I 
Sbjct: 148 FPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIM 207

Query: 181 -RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239
             + D VSWNS+IS +   G   EA+ LF RM+E     +  T V+ L    D   + LG
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
             + G V+K+    + Y+ +ALI MY KCG +  A RVF++M+ +D V+WN +++   QN
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359
            L ++A+  F  M+ +G  PD+++++ +++A    G L  GK V  YA + GL  ++  G
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIG 387

Query: 360 S--IDDALK---------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
           +  +D   K          FE M   + +SW  +I+  A N    EA+ LF ++  +G  
Sbjct: 388 NTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD 447

Query: 409 ARPNDVTFIG-VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM-----VDLYARA 462
             P     IG VL AC        G +  + +    G + K +    M     V++Y   
Sbjct: 448 VDP---MMIGSVLRAC-------SGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEV 497

Query: 463 GHLSEAWDFVERMPEKV 479
           GH+    D+  R  E +
Sbjct: 498 GHI----DYARRAFESI 510



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 196/372 (52%), Gaps = 15/372 (4%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+ +M+ +G+  + +T+        +   +  G+ +H +V K     D +V+++LI 
Sbjct: 232 ALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIA 291

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA+CG+++ A +VF+ +  RD VSWN+++SG  +     +A+  F  M+     PD+++
Sbjct: 292 MYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVS 351

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +++++ + G  G+L+ GK V  + ++N +D N  +G+ L+DMY KC  +      F+ M 
Sbjct: 352 VLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMH 411

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            KD+++W  +I  YAQN    EAI LF +++  G++ D + +  VL AC+ + + +  + 
Sbjct: 412 EKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  Y  +R L  DI             G ID A + FE +   + VSW +MI+    NG 
Sbjct: 472 IHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGL 530

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
             EAL LF  + +     +P+ +  I  LSA  +   + +G+ +   +    G   +   
Sbjct: 531 PVEALELFYSLKQTN--IQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEGPI 587

Query: 452 YSCMVDLYARAG 463
            S +VD+YA  G
Sbjct: 588 ASSLVDMYACCG 599


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 175/494 (35%), Positives = 268/494 (54%), Gaps = 23/494 (4%)

Query: 86  FNVMIRGLTTAWQKY----------SHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
           F++M +  T  W               ++ L+  M   G+K D+ T+     S     +L
Sbjct: 336 FDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL 395

Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
            +   VHS + + G+  D ++  +L+ +Y + G ++ A K F +    D+    +MISGY
Sbjct: 396 KYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGY 455

Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
              G   EA+ LF  + +E  +P+ +T+ SVL +C  L  L LGK +   ++K  ++   
Sbjct: 456 VLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVC 515

Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
            +GS++  MY K G L  A + F  M  KD V WN MI +++QNG    AI LF +M  +
Sbjct: 516 QVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTS 575

Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
           G   D ++L   LSACA+  AL  GK +  +  +     D F           CG +  A
Sbjct: 576 GTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALA 635

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
             VF+ M   NEVSWN++I+A   +GR  E L LF  M + G   +P+ VTF+ ++SAC 
Sbjct: 636 RSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAG--IQPDHVTFLVIMSACG 693

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLVDEG   F  M+  +G+  + EH++CMVDLY RAG L EA+D ++ MP   D    
Sbjct: 694 HAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTW 753

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
           G+LLGAC+   N ++++   + L+E++ +NSG YV+ S + A    W+   K+R+LM+EK
Sbjct: 754 GSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEK 813

Query: 545 GVSKTPGCSWIGID 558
           GV K PG SWI ++
Sbjct: 814 GVQKIPGYSWIDVN 827



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/478 (29%), Positives = 228/478 (47%), Gaps = 27/478 (5%)

Query: 23  LREKLLSLLKKCPST------KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYAS 72
           L  +L S+ +  P++      + V+QIH ++L+  +     L  R++ +    + F    
Sbjct: 72  LAAQLESMFRAFPNSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVG 131

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
            LF ++       +N +IRG +     +  +L  +++M    + PD +T+P+V  +C  L
Sbjct: 132 NLFCRLQLCYSLPWNWLIRGFSML-GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGL 190

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
             +     VH     +G   D  +  SLI +Y   G +  A+ +FDE+  RD + WN M+
Sbjct: 191 NNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVML 250

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           +GY K G    A+  F  MR     P+ ++ V +L  C   G +  G  + G V+++  +
Sbjct: 251 NGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFE 310

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            +  + + +I MY KCG L  AR++FD M   D VTWN +I  Y QNG ++EA+ LF  M
Sbjct: 311 SDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAM 370

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSI 361
             +GV  D IT    L +    G+L   K V  Y  + G+  D++            G +
Sbjct: 371 VTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDV 430

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           + A K F+   + +     AMIS    NG   EAL LF  + +EG    PN +T   VL 
Sbjct: 431 EMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMV--PNCLTMASVLP 488

Query: 422 ACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           AC     +  G+ L  D++    GL    +  S +  +YA++G L  A+ F  RMP K
Sbjct: 489 ACAALASLKLGKELHCDILKK--GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK 544



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 205/424 (48%), Gaps = 23/424 (5%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFH 76
           S+     L  + K  S K  +++H+ ++ + +    +L   ++D+     D   A   F 
Sbjct: 379 SITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQ 438

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
           Q +  +      MI G          +L L+  + + G+ P+  T   V  +CA L +L 
Sbjct: 439 QNTLVDVAVCTAMISGYVLNGLNV-EALNLFRWLIQEGMVPNCLTMASVLPACAALASLK 497

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
            G  +H  + K GL+    V  S+  MYA+ G+LD A + F  +  +D V WN MI  +S
Sbjct: 498 LGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFS 557

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           + G  + A++LF +M       D ++L + L +C +   L  GK +  FVV+N    + +
Sbjct: 558 QNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTF 617

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + S LIDMY KCG L  AR VFD M  K+ V+WN++I AY  +G   E + LF+ M  AG
Sbjct: 618 VASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAG 677

Query: 317 VNPDKITLIGVLSACASIGALDLGKW-----VDKYASQRGLRH-----DIF--CGSIDDA 364
           + PD +T + ++SAC   G +D G +      ++Y     + H     D++   G + +A
Sbjct: 678 IQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEA 737

Query: 365 LKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
               + MP T +  +W +++ A   +G    A L     SK      PN+  +  +LS  
Sbjct: 738 FDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKL----ASKHLVELDPNNSGYYVLLSN- 792

Query: 424 VHAG 427
           VHAG
Sbjct: 793 VHAG 796


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 177/578 (30%), Positives = 289/578 (50%), Gaps = 52/578 (8%)

Query: 29  SLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           S+LK C   P  +   Q+H   L +   K   +    +D+     +   A  LF      
Sbjct: 287 SVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENL 346

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N  ++N MI G +     +  +L L+ ++ +  L  D  +      +CA +  L+ G+ +
Sbjct: 347 NLQSYNAMITGYSQKDNGF-RALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQL 405

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H    K     +  V+++ I MY +C  LD A +VFDE+  +D VSWN++I+ + +    
Sbjct: 406 HGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEER 465

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD-LVLGKWVEGFVVKNKMDLNFYMGSA 260
            + + +   M      PDE T  SVL +C   GD L  G  +   +VK  M  N Y+GS+
Sbjct: 466 SKTLNILVSMLRSGMEPDEYTFGSVLKACA--GDSLNHGMEIHTTIVKLGMASNPYIGSS 523

Query: 261 LIDMYGKCGALVPARRVF---------------------------DAMVNKDVVTWNAMI 293
           L+DMY KCG +  A ++                            D  V + +V+WNA+I
Sbjct: 524 LVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAII 583

Query: 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353
           + Y     S +A   FNRM   G+ PDK T   VL  CA++ ++ LGK +  +  ++ L+
Sbjct: 584 SGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQ 643

Query: 354 HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
           +D++           CG++ D+  +FE  P+ + V+WNAMI   A +G   EA+ LFE M
Sbjct: 644 YDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESM 703

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
                   PN  TF+ +L AC H GLV+ G   F +M   +GL P+ EHYS MVD+  ++
Sbjct: 704 VLMN--IMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKS 761

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQ-KQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           G + +A + ++ MP + D+++   LL AC+  + N + ++     LL ++  +S  Y++ 
Sbjct: 762 GEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQDSSTYILL 821

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           S I+A+  MWD ++++R  MR   + K PGCSW+ I D
Sbjct: 822 SNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIRD 859



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 226/475 (47%), Gaps = 16/475 (3%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
            K    H+  +       +   LL L   C +     ++   M +  +   N ++     
Sbjct: 68  GKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAA 127

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
             D   ASL F  +   +  ++N M+ G     +    S+K++ +M R G++ DN ++  
Sbjct: 128 SNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENL-ESVKVFIEMGRSGVEFDNKSFSV 186

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD 184
           +   C+ L     G  +H    ++G D D     +L+ MYA+C +LD +  VF  + +++
Sbjct: 187 ILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKN 246

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244
            +SW+++I+G  +  +    +++F  M++      +    SVL SC  L DL LG  +  
Sbjct: 247 WISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHA 306

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304
             +K+    +  + +A +DMY KC  +  A+R+FD   N ++ ++NAMIT Y+Q      
Sbjct: 307 HALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFR 366

Query: 305 AIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
           A++LF ++  + +  D+I+L G L ACA++  L  G  +   A++     +I        
Sbjct: 367 ALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFID 426

Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               C ++D+A +VF++M   + VSWNA+I+A   N    + L +   M + G    P++
Sbjct: 427 MYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSG--MEPDE 484

Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
            TF  VL AC    L + G  +   +    G+       S +VD+Y++ G + EA
Sbjct: 485 YTFGSVLKACAGDSL-NHGMEIHTTI-VKLGMASNPYIGSSLVDMYSKCGMIDEA 537



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 197/416 (47%), Gaps = 52/416 (12%)

Query: 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163
           LK++ +M+++G+      Y  V  SCA L  L  G  +H+   K    +D  V  + + M
Sbjct: 267 LKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDM 326

Query: 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL 223
           YA+C  +  A+++FD     +L S+N+MI+GYS+      A+ LF ++ +     DEI+L
Sbjct: 327 YAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISL 386

Query: 224 VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283
              L +C  +  L  G  + G   K+    N  + +A IDMYGKC AL  A RVFD M  
Sbjct: 387 SGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGR 446

Query: 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343
           KD V+WNA+I A+ QN   ++ + +   M  +G+ PD+ T   VL ACA   +L+ G  +
Sbjct: 447 KDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEI 505

Query: 344 DKYASQRGLRHDIF-----------CGSIDDALKV-------------FEDMPVTNE--- 376
                + G+  + +           CG ID+A K+             + + P T E   
Sbjct: 506 HTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPK 565

Query: 377 -----------VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
                      VSWNA+IS      ++ +A   F RM + G    P+  T+  VL  C +
Sbjct: 566 GIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMG--ITPDKFTYSTVLDTCAN 623

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHY-----SCMVDLYARAGHLSEAWDFVERMP 476
              +  G+++         +I K   Y     S +VD+Y++ G+L ++    E+ P
Sbjct: 624 LASIGLGKQIHA------HVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAP 673



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 201/465 (43%), Gaps = 58/465 (12%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
           LLFHQ    N     V I  ++TA   +          ++      NF+  FVF  CA  
Sbjct: 15  LLFHQHLTKNIPYRRVRIFSISTASVNH----------EKPATSVANFS--FVFKECAKQ 62

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            A   G   H+ +   G      VS+ L+ +Y  CG L  A K+FD +  RD+VSWN+MI
Sbjct: 63  RAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMI 122

Query: 193 SGYS-------------------------------KMGYAKEAVELFGRMREEEFLPDEI 221
            GY+                               + G   E+V++F  M       D  
Sbjct: 123 FGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNK 182

Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
           +   +L  C  L +  LG  + G  ++   D +   GSAL+DMY KC  L  +  VF AM
Sbjct: 183 SFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAM 242

Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
             K+ ++W+A+I    QN   +  + +F  M+  GV   +     VL +CA++  L LG 
Sbjct: 243 PQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGT 302

Query: 342 WVDKYASQ---------RGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
            +  +A +         R    D++  C ++ DA ++F+     N  S+NAMI+  +   
Sbjct: 303 QLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKD 362

Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
               ALLLF ++SK   +   ++++  G L AC     + EG +L  L + S        
Sbjct: 363 NGFRALLLFRKLSK--SSLGFDEISLSGALRACATVKGLSEGLQLHGLATKS-NFSRNIC 419

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
             +  +D+Y +   L EA    + M  K D +   A++ A ++ +
Sbjct: 420 VANAFIDMYGKCEALDEACRVFDEMGRK-DAVSWNAIIAAHEQNE 463



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 58/247 (23%)

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTN 375
           V   CA   A +LGK    +    G R  +F           CG++  A K+F+ MP+ +
Sbjct: 55  VFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRD 114

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG-------- 427
            VSWNAMI   A +     A L FE M         + V++  +LS  +  G        
Sbjct: 115 VVSWNAMIFGYAASNDMVRASLCFEMMPTR------DVVSWNSMLSGFLQTGENLESVKV 168

Query: 428 LVDEGRRLFDLMSSSFGLIPKS----EHY----------------------SCMVDLYAR 461
            ++ GR   +  + SF +I K     E+Y                      S ++D+YA+
Sbjct: 169 FIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAK 228

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
              L E++     MP+K + I   A++  C +    D     +++  E++    G   +S
Sbjct: 229 CKRLDESFTVFYAMPQK-NWISWSAIIAGCVQNNFLDGG---LKMFKEMQKVGVG---VS 281

Query: 522 SKIFANL 528
             I+A++
Sbjct: 282 QSIYASV 288


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 266/497 (53%), Gaps = 16/497 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F++    NE ++N +I GL    + +  +L  +  M   G +P++ T   +      L 
Sbjct: 318 VFNETVEKNEVSWNSIINGLACKGRCWD-ALNAFRMMIDAGAQPNSVTISSILPVLVELE 376

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  +H    ++G + D  +++SLI MYA+ G    A  +F  +  R++VSWN+MI+
Sbjct: 377 CFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIA 436

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y+      EA+    +M+E    P+ +T  +VL +C  LG L  GK +    V+  +  
Sbjct: 437 NYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTS 496

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++ ++LIDMY KCG L  AR VF+    KD V++N +I  Y++     +++ LF+ M+
Sbjct: 497 DLFVSNSLIDMYAKCGCLHSARNVFNTS-RKDEVSYNILIIGYSETDDCLQSLNLFSEMR 555

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             G  PD ++ +GV+SACA++ AL  GK V   A +  L   +F           CG ID
Sbjct: 556 LLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRID 615

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A ++F  +   +  SWN MI      G    A+ +FE M  +    + + V++I VLSA
Sbjct: 616 IACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDD--TVQYDLVSYIAVLSA 673

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GLV+ G + F  M +   L P   HY+CMVDL  RAG + EA   ++++P   D  
Sbjct: 674 CSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDAN 732

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALLGAC+   N ++ +R  + L E++  + G Y++ S I+A    WD++ K+R LM+
Sbjct: 733 IWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMK 792

Query: 543 EKGVSKTPGCSWIGIDD 559
            +G  K PGCSW+ I D
Sbjct: 793 SRGAKKNPGCSWVQIYD 809



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 144/466 (30%), Positives = 229/466 (49%), Gaps = 30/466 (6%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKDFNYASL--------LFH 76
            LL+L  K  S    +Q+H   ++N F+ +   L   +I     NYA          LF+
Sbjct: 59  NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLI----LNYAKFQHPGSFCSLFN 114

Query: 77  QISRPNEYAF--NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           Q  +    AF  N +IR  + AW       + Y +M R G++ D+ T+PFV   C++   
Sbjct: 115 QTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFD 174

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +  G+ VH  VFK+G D D +V ++L+ +Y  CG L+ AR++FDE+ ERD+VSWN++I  
Sbjct: 175 ICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGL 234

Query: 195 YSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            S  G   EA   +  M     + P+ ++++S+L     L D  + + +  + VK  +D 
Sbjct: 235 LSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDS 294

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
                +AL+D YGKCG++    +VF+  V K+ V+WN++I   A  G   +A+  F  M 
Sbjct: 295 QVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMI 354

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
            AG  P+ +T+  +L     +     GK +  ++ + G   DIF            G   
Sbjct: 355 DAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHST 414

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
           +A  +F ++   N VSWNAMI+  A N    EA+    +M + G    PN VTF  VL A
Sbjct: 415 EASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGEC--PNAVTFTNVLPA 472

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
           C   G +  G+ +   M    GL       + ++D+YA+ G L  A
Sbjct: 473 CARLGFLGPGKEI-HAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSA 517



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 39/413 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS +FH + R N  ++N MI       +    +++   QM+  G  P+  T+  V  +CA
Sbjct: 416 ASTIFHNLDRRNIVSWNAMIANYALN-RLPLEAIRFVIQMQETGECPNAVTFTNVLPACA 474

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  L  G  +H+   +IGL  D  VS+SLI MYA+CG L SAR VF+  R +D VS+N 
Sbjct: 475 RLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNI 533

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I GYS+     +++ LF  MR     PD ++ V V+ +C +L  L  GK V G  ++N 
Sbjct: 534 LIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNH 593

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + ++ ++L+D Y KCG +  A R+F+ ++ KDV +WN MI  Y   G    AI +F 
Sbjct: 594 LYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFE 653

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFE 369
            M+   V  D ++ I VLSAC+  G ++ G ++  +  +QR                   
Sbjct: 654 AMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR------------------- 694

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
                 E+ +  M+  L   G   EA  L +++        P+   +  +L AC   G V
Sbjct: 695 --LEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL-----PIAPDANIWGALLGACRIYGNV 747

Query: 430 DEGRR----LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           + GRR    LF+L     G      +Y  + ++YA  G   EA    E M  +
Sbjct: 748 ELGRRAAEHLFELKPQHCG------YYILLSNIYAETGRWDEANKIRELMKSR 794



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 213/438 (48%), Gaps = 43/438 (9%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLG 114
           N LL+   +    N A  LF ++   +  ++N +I GL +    Y+ +   Y+ M  R  
Sbjct: 198 NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTII-GLLSVNGDYTEARNYYFWMILRSV 256

Query: 115 LKPDNFTYPFVFISCANLLALNHGVS-------VHSSVFKIGLDEDDHVSHSLITMYARC 167
           +KP+        +S  +LL ++  +        +H    K+GLD      ++L+  Y +C
Sbjct: 257 IKPN-------LVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKC 309

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G + +  +VF+E  E++ VSWNS+I+G +  G   +A+  F  M +    P+ +T+ S+L
Sbjct: 310 GSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSIL 369

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
               +L     GK + GF ++   + + ++ ++LIDMY K G    A  +F  +  +++V
Sbjct: 370 PVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIV 429

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +WNAMI  YA N L  EAI    +M+  G  P+ +T   VL ACA +G L  GK +    
Sbjct: 430 SWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMG 489

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + GL  D+F           CG +  A  VF +    +EVS+N +I   +      ++L
Sbjct: 490 VRIGLTSDLFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSL 548

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS--- 453
            LF  M   G   +P+ V+F+GV+SAC +   + +G+ +        G+  ++  YS   
Sbjct: 549 NLFSEMRLLG--KKPDVVSFVGVISACANLAALKQGKEV-------HGVALRNHLYSHLF 599

Query: 454 ---CMVDLYARAGHLSEA 468
               ++D Y + G +  A
Sbjct: 600 VSNSLLDFYTKCGRIDIA 617


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 256/466 (54%), Gaps = 43/466 (9%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +N  + +H+ + + G  +D  +   L+   ++C  +D A ++F      ++  + ++I G
Sbjct: 62  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 121

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +   G   +A++L+ RM  +  LPD   + S+L +CG    L  G+ V    +K  +  N
Sbjct: 122 FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSN 181

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVN------------------------------K 284
             +   ++++YGKCG L  ARRVF+ M                                K
Sbjct: 182 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRK 241

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D V W AMI  + +N   N A+  F  M+   V P++ T++ VLSAC+ +GAL++G+WV 
Sbjct: 242 DTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH 301

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            Y  +  +  ++F           CGSID+A  VF++M   + +++N MIS L+ NG++ 
Sbjct: 302 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 361

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           +A+ LF  M   G   RP +VTF+GVL+AC H GLVD G ++F  M+  +G+ P+ EHY 
Sbjct: 362 QAIELFRVMI--GRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYG 419

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVDL  R G L EA+D +  M    D I+LG LL AC+  KN ++ ++V ++L +   +
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQA 479

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +SG YV+ S ++A+   W ++A++RA M+E G+ K PGCS I +++
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 232/496 (46%), Gaps = 71/496 (14%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFH 76
           SL +++++SLL++      V  IH Q++ N   +  F++  ++         +YAS +F 
Sbjct: 46  SLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQ 105

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
               PN Y +  +I G  ++   Y  +++LY +M    + PDN+    +  +C + LAL 
Sbjct: 106 YTHNPNVYLYTALIDGFVSSGN-YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 164

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE----------------- 179
            G  VHS   K+GL  +  V   ++ +Y +CG+L  AR+VF+E                 
Sbjct: 165 EGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSD 224

Query: 180 -------------IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
                        +R +D V W +MI G+ +      A+E F  M+ E   P+E T+V V
Sbjct: 225 QGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCV 284

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +C  LG L +G+WV  ++ K +++LN ++G+ALI+MY +CG++  A+ VFD M ++DV
Sbjct: 285 LSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDV 344

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKY 346
           +T+N MI+  + NG S +AI LF  M    + P  +T +GVL+AC+  G +D G      
Sbjct: 345 ITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFG------ 398

Query: 347 ASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-----WNAMISALAFNGRAHEALLLFER 401
                              K+F  M     V      +  M+  L   GR  EA  L   
Sbjct: 399 ------------------FKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 440

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M        P+ +    +LSAC     ++ G ++  ++         S  Y  +  +YA 
Sbjct: 441 MK-----MTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQ--ADSGTYVLLSHVYAS 493

Query: 462 AGHLSEAWDFVERMPE 477
           +G   EA     +M E
Sbjct: 494 SGKWKEAAQVRAKMKE 509



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 162/346 (46%), Gaps = 36/346 (10%)

Query: 6   KAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
           + +SR L    L+   L+R +++ L  KC      +++  +M  + +     ++    D 
Sbjct: 168 EVHSRALKLG-LSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAS-TVMISSYSDQ 225

Query: 66  KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
                A  +F ++ R +   +  MI G     ++ + +L+ +  M+   ++P+ FT   V
Sbjct: 226 GLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN-EEMNRALEAFRGMQGENVRPNEFTIVCV 284

Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
             +C+ L AL  G  VHS + K  ++ +  V ++LI MY+RCG +D A+ VFDE+++RD+
Sbjct: 285 LSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDV 344

Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
           +++N+MISG S  G +++A+ELF  M      P  +T V VL +C   G LV        
Sbjct: 345 ITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH-GGLV-------- 395

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
                 D  F +  ++   YG               V   +  +  M+    + G   EA
Sbjct: 396 ------DFGFKIFHSMTRDYG---------------VEPQIEHYGCMVDLLGRVGRLEEA 434

Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
             L   MK   + PD I L  +LSAC     L+LG+ V K    RG
Sbjct: 435 YDLIRTMK---MTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG 477


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 269/509 (52%), Gaps = 15/509 (2%)

Query: 62  IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
           ++   D   A   FHQ+   +   +NVMI G       +     L+  M    ++P   T
Sbjct: 200 LVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGL-FREGYNLFLDMLYNKIEPSAVT 258

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
              +  SC  +  L  G  +H  V   G+  D  V  +LI MY + G ++SAR +F+ + 
Sbjct: 259 MISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMP 318

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
            R+LVSWN MISGY + G   E + LF ++  ++   D  T+VS++  C    DL  GK 
Sbjct: 319 SRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKI 378

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           + GF+ +  +DLN  + +A++D+Y KCG+L  A  VF+ M NK+V++W AM+   AQNG 
Sbjct: 379 LHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGH 438

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
           + +A+ LF++M+   V  + +TL+ ++  C  +G L  G+ V    ++     ++     
Sbjct: 439 ARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTA 498

Query: 358 -------CGSIDDALKVFE-DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
                  C  I+ A  VF+  +   + + +N+MIS    +G  H+AL ++ RM++EG   
Sbjct: 499 LIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREG--L 556

Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
           +PN+ TF+ +LSAC H+GLV+EG  LF  M       P  + Y+C+VDL +RAG L +A 
Sbjct: 557 QPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAE 616

Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
           + + +MP      +L  LL  C   K+ ++  ++   LL +ES N   Y+  S I+A   
Sbjct: 617 ELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKAS 676

Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGID 558
            WD    +R LM E+ + K PG S I ++
Sbjct: 677 RWDSVKYVRGLMMEQEIKKIPGYSSIEVN 705



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 220/437 (50%), Gaps = 19/437 (4%)

Query: 47  MLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH 102
           ++ N I    FL+ +++     L     A  +F +I +P     N M+ G     ++Y+ 
Sbjct: 80  IITNPIYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQN-ERYND 138

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
            ++L   M R  L+ D++T  F   +C  LL    G+ V       GL     +  S++ 
Sbjct: 139 CIELLKMMSRCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILN 198

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
              + G +  A+  F ++ E+D+V WN MI G+ + G  +E   LF  M   +  P  +T
Sbjct: 199 FLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVT 258

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           ++S++ SCG++ +L  GK + GFV+   M  +  + + LIDMY K G +  AR +F+ M 
Sbjct: 259 MISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMP 318

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
           ++++V+WN MI+ Y QNGL  E + LF ++    V  D  T++ ++  C+    LD GK 
Sbjct: 319 SRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKI 378

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           +  +  +RGL  ++            CGS+  A  VFE M   N +SW AM+  LA NG 
Sbjct: 379 LHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGH 438

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451
           A +AL LF++M  E      N +T + ++  C   GL+ EGR +   + + F    +   
Sbjct: 439 ARDALKLFDQMQNE--RVTFNALTLVSLVYCCTLLGLLREGRSVHATL-TRFHFASEVVV 495

Query: 452 YSCMVDLYARAGHLSEA 468
            + ++D+YA+   ++ A
Sbjct: 496 MTALIDMYAKCSKINSA 512


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 160/510 (31%), Positives = 285/510 (55%), Gaps = 15/510 (2%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+I    +     A ++F ++   +  ++N MI G  +    +  SL  + +M+  G+
Sbjct: 165 NSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGW-RSLSCFREMQASGI 223

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           K D F+   +  +C+    L +G  +H  + +  L+ D  V  SL+ MYA+CG++D A +
Sbjct: 224 KLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAER 283

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLG 234
           +FD+I ++ +V+WN+MI GYS    + E+     +M+E   L PD IT++++L  C  L 
Sbjct: 284 LFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLE 343

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            ++LGK V GF ++N    +  + +AL+DMYG+CG L PA  +F  M  +++++WNAMI 
Sbjct: 344 AILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIA 403

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           +Y +NG + +A+ LF  +    + PD  T+  +L A A + +L   + +  Y ++  L  
Sbjct: 404 SYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDS 463

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           + F           CG++  A ++F+ M   + +SWN +I A A +G    ++ LF  M 
Sbjct: 464 NTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMR 523

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           ++G    PN  TF+ +L +C  AGLV+EG   F+ M   + + P  EHY C++DL  R G
Sbjct: 524 EKG--FEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTG 581

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
           +L  A +F+E MP      + G+LL A + + + ++++   + +L +E  N+G YV+ S 
Sbjct: 582 NLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSN 641

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCS 553
           ++A    W+D  +++  M+++G+ K+ GCS
Sbjct: 642 MYAEAGRWEDVERIKFHMKKEGLEKSVGCS 671



 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 229/417 (54%), Gaps = 16/417 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           LF  + + + + +NVMIRG       +  ++  Y++M+  G++ DNFTYPFV  +C  L 
Sbjct: 82  LFENMRQCDTFIWNVMIRGFVDN-GLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLY 140

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            L  G  VH  V K GLD D ++ +SLI MYA+ G ++SA  VF E+  RDLVSWNSMIS
Sbjct: 141 DLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMIS 200

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
           GY  +G    ++  F  M+      D  +++ +LG+C   G L  GK +   +++++++L
Sbjct: 201 GYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLEL 260

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +  + ++L+DMY KCG +  A R+FD + +K +V WNAMI  Y+ N  S E+     +M+
Sbjct: 261 DVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQ 320

Query: 314 YAG-VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG-LRH--------DIF--CGSI 361
             G ++PD IT+I +L  CA + A+ LGK V  +A + G L H        D++  CG +
Sbjct: 321 EGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKL 380

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A  +F  M   N +SWNAMI++   NG   +A+ LF+ +  +    +P+  T   +L 
Sbjct: 381 KPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNK--TLKPDATTIASILP 438

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           A      + E  ++   + +   L   +   + +V +Y + G+L  A +  +RM  K
Sbjct: 439 AYAELASLREAEQIHGYV-TKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFK 494



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 191/363 (52%), Gaps = 19/363 (5%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           ++IH QM+ + ++    +   ++D+       +YA  LF QI+  +  A+N MI G +  
Sbjct: 247 KEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLN 306

Query: 97  WQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
            Q +  S     +M+  G L PD  T   +   CA L A+  G SVH    + G      
Sbjct: 307 AQSF-ESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLV 365

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           +  +L+ MY  CGKL  A  +F ++ ER+L+SWN+MI+ Y+K G  ++A+ LF  +  + 
Sbjct: 366 LETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKT 425

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD  T+ S+L +  +L  L   + + G+V K K+D N ++ ++++ MYGKCG L+ AR
Sbjct: 426 LKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAR 485

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
            +FD M  KDV++WN +I AYA +G    +I LF+ M+  G  P+  T + +L +C+  G
Sbjct: 486 EIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAG 545

Query: 336 ALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVTNEVS-WNAM 382
            ++ G          Y    G+ H     D+    G++D A    E+MP+      W ++
Sbjct: 546 LVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSL 605

Query: 383 ISA 385
           ++A
Sbjct: 606 LTA 608



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 166/329 (50%), Gaps = 13/329 (3%)

Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
           ++ Y   G + +A  +F+ +R+ D   WN MI G+   G   +AV+ + RM       D 
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
            T   V+ +CG L DL  G+ V G V+K+ +DL+ Y+G++LI MY K G +  A  VF  
Sbjct: 127 FTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFRE 186

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  +D+V+WN+MI+ Y   G    ++  F  M+ +G+  D+ ++IG+L AC+  G L  G
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNG 246

Query: 341 KWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389
           K +     +  L  D+            CG +D A ++F+ +   + V+WNAMI   + N
Sbjct: 247 KEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLN 306

Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
            ++ E+     +M +EGG   P+ +T I +L  C     +  G+ +      + G +P  
Sbjct: 307 AQSFESFAYVRKM-QEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRN-GFLPHL 364

Query: 450 EHYSCMVDLYARAGHLSEAWDFVERMPEK 478
              + +VD+Y   G L  A     +M E+
Sbjct: 365 VLETALVDMYGECGKLKPAECLFGQMNER 393



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 350 RGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
           R L   +  G + +AL +FE+M   +   WN MI     NG   +A+  + RM  E G  
Sbjct: 65  RALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRM--EFGGV 122

Query: 410 RPNDVTFIGVLSACVHAGLVD--EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467
           R ++ T+  V+ AC   GL D  EG R+   +  S GL       + ++ +YA+ G +  
Sbjct: 123 RGDNFTYPFVIKAC--GGLYDLAEGERVHGKVIKS-GLDLDIYIGNSLIIMYAKIGCIES 179

Query: 468 AWDFVERMP 476
           A      MP
Sbjct: 180 AEMVFREMP 188


>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
          Length = 642

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 249/454 (54%), Gaps = 17/454 (3%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177
           DN++      + A + +L+ G   H+   K+ L  D  V ++LI MY+ C    SAR V 
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63

Query: 178 DEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           D       D+VSWN++I+GY + G   +A++ F +M +E+   DE+TL++VL +C   G 
Sbjct: 64  DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGA 123

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           + +G      VV N  ++N Y+GS+L+ MY KCG +  ARRVF+ M  ++VV W +MI  
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
             Q+G   EA+ LF  M+ AGV  D  T+  V+S+C  +GALDLG+++  Y    GL  +
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE 243

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG ++ A ++F  +   +  +W  MI   A NG   EAL LF +M  
Sbjct: 244 LSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEG 303

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
           E     PN+V F+GVL+AC H GLV++G   F  MS  + L+P+ EHY CMVDL  RA  
Sbjct: 304 ED-KVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKL 362

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           L+EA  F++ MP   D +V  +LL AC+      +++   + + ++E    G +V+ S +
Sbjct: 363 LAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNV 422

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           +A    W D   +R  M   G S+T   + + +D
Sbjct: 423 YATTSRWVDVNNVRTGM---GNSRTSQIAQVIVD 453



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 207/397 (52%), Gaps = 21/397 (5%)

Query: 28  LSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-KDFNY---ASLLFHQISR--P 81
           +S   + PS     Q H   L   +   +F+L  +I++    NY   A L+     R   
Sbjct: 12  ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 71

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           +  ++N +I G        + +L+ ++QM +  ++ D  T   V ++CA   A+  G   
Sbjct: 72  DVVSWNTIIAGYIRGGMP-NKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 130

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V   G + + ++  SL++MYA+CG ++ AR+VF+ + ER++V W SMI+G ++ G  
Sbjct: 131 HALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRF 190

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
           KEAV+LF  M+      D+ T+ +V+ SCG +G L LG+++  +   + +     + ++L
Sbjct: 191 KEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSL 250

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPD 320
           IDMY KCG +  A ++F  +  +DV TW  MI  +A NGL  EA+ LF +M+    V P+
Sbjct: 251 IDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310

Query: 321 KITLIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIFCGS--IDDALKVF 368
           ++  +GVL+AC+  G ++ G     +    Y     + H     D+   +  + +A +  
Sbjct: 311 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFI 370

Query: 369 EDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSK 404
           +DMPV  + V W +++ A   +G+   A    ER+ +
Sbjct: 371 KDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQ 407


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 300/567 (52%), Gaps = 55/567 (9%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISR 80
           E+ ++ L KC +   ++QIH Q++   + +  ++  ++I       + + A  +F+Q+  
Sbjct: 23  EENITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPD 82

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLY---YQMKRLGLKPDNFTYPFVFISC---ANLLA 134
           PN + +N +IR  + +  + S+SL  +    +M   G+  DNFTYPF+   C   ++ L+
Sbjct: 83  PNVHLYNYLIRAYSLSGNE-SNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLS 141

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L     VH+ V K+G   D  V +SLI  Y RCG ++ A KVF  + ERD+VSWNSM+ G
Sbjct: 142 LVK--MVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGG 199

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DL 253
             K G    A+++F  M E     D ++  ++L      G++      + F +  +M + 
Sbjct: 200 LVKNGDLDGALKVFDEMPER----DRVSWNTMLDGFTKAGEMD-----KAFKLFERMAER 250

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           +    S ++  Y K G +  AR +FD    K++V W  +I+ YA+ G   EA+ L + M+
Sbjct: 251 DIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEME 310

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGK--------------------WVDKYASQRGLR 353
            +G+  D    I +L+ACA  G L LGK                    ++D YA      
Sbjct: 311 KSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAK----- 365

Query: 354 HDIFCGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412
               CG +DDA +VF  M    + VSWN+MI     +G   +++ LF  M +EG   +P+
Sbjct: 366 ----CGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREG--FKPD 419

Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
             TFIG+L AC HAGLV+EGR  F  M   +G++P+ EHY CMVDL  R GHL EA+  V
Sbjct: 420 RYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLV 479

Query: 473 ERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532
             MP + + I+LG LLGAC+   +  ++  V + L ++  S+ GN+ + S I+A    W 
Sbjct: 480 RSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWI 539

Query: 533 DSAKMRALMREKGVSKTPGCSWIGIDD 559
           + AK+R  M ++G  K  G S I +++
Sbjct: 540 NVAKVRKQMNDEGGQKPSGVSSIEVEE 566


>gi|225456926|ref|XP_002278116.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Vitis vinifera]
          Length = 560

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/548 (33%), Positives = 282/548 (51%), Gaps = 19/548 (3%)

Query: 26  KLLSLLKKCPST-KTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISR 80
           KLL  L K   T    +++H  ++ N +    F   RI+       D   A  LF   S 
Sbjct: 13  KLLFELSKIHQTLPRTKKLHAFIIRNHLSDDPFYATRILRFYAINSDLCSARNLFDGTSY 72

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            + Y +N +IR      Q +  +L L+ +M R  +KPD+FT+  V  +CA     +    
Sbjct: 73  RSVYLWNSVIRAYAGEHQ-FDDALLLFAKMLRTEIKPDSFTFACVLRACAENFDPDGLRV 131

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           VH  V   GL  D     +L+T Y++   +D A +VF  + E DLV WN+M +GY   G+
Sbjct: 132 VHGGVVVSGLGFDSVCGSALVTAYSKLCMVDEASRVFYGMAEPDLVLWNAMAAGYGYCGF 191

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             + ++LF  MR     PD  T+V ++    D   L +GK + GF +K+  D N ++GSA
Sbjct: 192 WDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSSFDCNDHVGSA 251

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+ MY +C  L  A  VF  +   D+VTW+A+IT  +++G   +A++ F +M   G   D
Sbjct: 252 LVSMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFRKMNMEGKRVD 311

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
            I +  VL+A      L  G  +  Y  + GL  ++            CG ++  ++VF+
Sbjct: 312 PILIASVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSKCGFVNLGVRVFD 371

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
            MP  N VS+N+MI  L  +G A +A  +FE + ++G   +P++ TF  +L  C HAGLV
Sbjct: 372 SMPNRNTVSYNSMILGLGIHGLAPQAFKMFEEVLEKG--FKPDESTFSALLCTCCHAGLV 429

Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
             GR +F  M+  F +  +++HY  MV L   AG L EA+D +  + + VD  + GALL 
Sbjct: 430 KNGREIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSLQQPVDSGIWGALLS 489

Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
            C    N ++++ V Q L E +   S   V+ S I+A    WDD  K+R  ++E G+ K 
Sbjct: 490 CCNFHGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVKKLRDDIQEAGIKKM 549

Query: 550 PGCSWIGI 557
           PG SWIG+
Sbjct: 550 PGLSWIGV 557


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 273/514 (53%), Gaps = 18/514 (3%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
           N L+   +   D N A L+F ++   +  ++N MI G           L+L+  M +  +
Sbjct: 246 NALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLE-GLRLFGMMIKYPV 304

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
            PD  T   V  +C  L     G  +H  V +     D  + +SLI MY+  G ++ A  
Sbjct: 305 DPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAET 364

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF     RDLVSW +MISGY      ++A+E +  M  E  +PDEIT+  VL +C  L +
Sbjct: 365 VFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCN 424

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           L +G  +     +  +     + ++LIDMY KC  +  A  +F + + K++V+W ++I  
Sbjct: 425 LDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILG 484

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
              N    EA+  F  M    + P+ +TL+ VLSACA IGAL  GK +  +A + G+  D
Sbjct: 485 LRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFD 543

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEV-SWNAMISALAFNGRAHEALLLFERMS 403
            F           CG ++ A K F    V +EV SWN +++  A  G+   A  LF+RM 
Sbjct: 544 GFMPNAILDMYVRCGRMEYAWKQF--FSVDHEVTSWNILLTGYAERGKGAHATELFQRMV 601

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           +      PN+VTFI +L AC  +G+V EG   F+ M   + ++P  +HY+C+VDL  R+G
Sbjct: 602 ESN--VSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSG 659

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L EA++F+++MP K D  V GALL +C+   + ++ +   + + + ++++ G Y++ S 
Sbjct: 660 KLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSN 719

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
           ++A+   WD  A++R +MR+ G+   PGCSW+ +
Sbjct: 720 LYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEV 753



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 235/433 (54%), Gaps = 24/433 (5%)

Query: 52  IQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
           +Q  N LL   +   +   A  +F ++ + N +++NV++ G   A   +  +L LY++M 
Sbjct: 141 LQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKA-GLFDEALDLYHRML 199

Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
            +G+KPD +T+P V  +C  +  L  G  +H  V + G + D  V ++LITMY +CG ++
Sbjct: 200 WVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVN 259

Query: 172 SARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
           +AR VFD++  RD +SWN+MISGY + G   E + LFG M +    PD +T+ SV+ +C 
Sbjct: 260 TARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACE 319

Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA 291
            LGD  LG+ + G+V++ +   +  + ++LI MY   G +  A  VF     +D+V+W A
Sbjct: 320 LLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTA 379

Query: 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           MI+ Y    +  +A+  +  M+  G+ PD+IT+  VLSAC+ +  LD+G  + + A Q+G
Sbjct: 380 MISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKG 439

Query: 352 LRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           L           D++  C  ID AL++F      N VSW ++I  L  N R  EAL  F 
Sbjct: 440 LVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFR 499

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD---LMSSSF-GLIPKSEHYSCMV 456
            M +     +PN VT + VLSAC   G +  G+ +         SF G +P +     ++
Sbjct: 500 EMIRR---LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNA-----IL 551

Query: 457 DLYARAGHLSEAW 469
           D+Y R G +  AW
Sbjct: 552 DMYVRCGRMEYAW 564



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 50/364 (13%)

Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
           NS I     +G    A+     M E     ++   V+++  C        G  V  +V  
Sbjct: 75  NSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSI 134

Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
           +   L+  +G+AL+ M+ + G LV A  VF  M  +++ +WN ++  YA+ GL +EA+ L
Sbjct: 135 SMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDL 194

Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IF 357
           ++RM + GV PD  T   VL  C  +  L  G+ +  +  + G   D           + 
Sbjct: 195 YHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVK 254

Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
           CG ++ A  VF+ MP  + +SWNAMIS    NG   E L LF  M K      P+ +T  
Sbjct: 255 CGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKY--PVDPDLMTMT 312

Query: 418 GVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER-- 474
            V++AC   G    GR++   ++ + FG  P S H S ++ +Y+  G + EA     R  
Sbjct: 313 SVITACELLGDDRLGRQIHGYVLRTEFGRDP-SIHNS-LIPMYSSVGLIEEAETVFSRTE 370

Query: 475 ------------------MPEKV--------------DEIVLGALLGACQKQKNTDVSQR 502
                             MP+K               DEI +  +L AC    N D+   
Sbjct: 371 CRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMN 430

Query: 503 VMQL 506
           + ++
Sbjct: 431 LHEV 434


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 250/453 (55%), Gaps = 30/453 (6%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMI 192
           L  G +VH  V K G     H+ +S++ MY+ C  +  A +VF+   I +RD+VSWNS+I
Sbjct: 181 LRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 193 SGYSKMGYAKEAVELFGRMREE---EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
           SG+   G A+ A+  F  M  E      P+ +T++++L SC +LG +    WV  ++   
Sbjct: 241 SGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSR 300

Query: 250 KMDL----NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
              L    +  + +AL+DM+ +CG L  AR +FD +  K+VV W+AMI  Y Q     EA
Sbjct: 301 HSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEA 360

Query: 306 IMLFNRMKYAG------VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
           + LF +M   G      V P+ +TL+ V++AC+ +GA      + KYA   GL  D    
Sbjct: 361 LRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIA 420

Query: 358 ---------CGSIDDALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEG 406
                    CG I+   +VF +M  +    VSW++MI A   +G    AL LF  M    
Sbjct: 421 SALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT-- 478

Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
           G   PN++T+I VLSAC HAGLV++G+  F+ M   +G+ P  +HY+C+VDL  RAGHL 
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526
           EA + +  MP K D  + G+LL AC    N  + + V + +L ++S++ G++V+ + ++ 
Sbjct: 539 EAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYE 598

Query: 527 NLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +   WDD  +MR  +R  G+ K PG S+I I +
Sbjct: 599 DAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGN 631



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 215/443 (48%), Gaps = 39/443 (8%)

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
            IS  + + +N +I     A Q    +L  + +M+   +  +NFT+P +  +CA L  L 
Sbjct: 12  SISHKDTFHWNSLI--AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER--DLVSWNSMISG 194
             + VH+ + ++GL  D   + +L+  Y +CG    A +VFDE+ E   D+VSW ++IS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 195 YSKMGYAKEAVELFGRMR-------EEEFLPDEITLVSVLGSCG-DLGDLVL--GKWVEG 244
           YS  G   EA   FGRMR        E    D ++L +++ +C    G   L  G  V G
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLS 302
            VVK    ++ ++G++++ MY  C  +  A RVF+ +    +DVV+WN++I+ +  NG +
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249

Query: 303 NEAIMLFNRMKYAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG----LRHD 355
             A+  F  M   G   V P+++T+I +L +CA +G ++   WV +Y S R     +  D
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG++  A ++F+ +   N V W+AMI+         EAL LF +M  
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 405 EGG----AARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
           EG       +PN VT + V++AC   G       +    + + GL   +   S ++D+ A
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDMCA 428

Query: 461 RAGHLSEAWDFVERMPEKVDEIV 483
           + G +         M E    +V
Sbjct: 429 KCGDIEHGRQVFSEMDESTRTVV 451



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 12/187 (6%)

Query: 27  LLSLLKKCP---STKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L+S++  C    ++++   IH   +   + +   +   +ID+     D  +   +F ++ 
Sbjct: 385 LVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD 444

Query: 80  RPNE--YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
                  +++ MI G      +   +L+L+ +M+  G +P+  TY  V  +C++   +  
Sbjct: 445 ESTRTVVSWSSMI-GAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 138 GVSVHSSVFK-IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR-ERDLVSWNSMISGY 195
           G S  +S+ K  G+         L+ +  R G LD A  V   +  + DL  W S+++  
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAAC 563

Query: 196 SKMGYAK 202
              G  K
Sbjct: 564 HLHGNCK 570


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 266/497 (53%), Gaps = 16/497 (3%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F++    NE ++N +I GL    + +  +L  +  M   G +P++ T   +      L 
Sbjct: 169 VFNETVEKNEVSWNSIINGLACKGRCWD-ALNAFRMMIDAGAQPNSVTISSILPVLVELE 227

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
               G  +H    ++G + D  +++SLI MYA+ G    A  +F  +  R++VSWN+MI+
Sbjct: 228 CFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIA 287

Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
            Y+      EA+    +M+E    P+ +T  +VL +C  LG L  GK +    V+  +  
Sbjct: 288 NYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTS 347

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           + ++ ++LIDMY KCG L  AR VF+    KD V++N +I  Y++     +++ LF+ M+
Sbjct: 348 DLFVSNSLIDMYAKCGCLHSARNVFNTS-RKDEVSYNILIIGYSETDDCLQSLNLFSEMR 406

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
             G  PD ++ +GV+SACA++ AL  GK V   A +  L   +F           CG ID
Sbjct: 407 LLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRID 466

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A ++F  +   +  SWN MI      G    A+ +FE M  +    + + V++I VLSA
Sbjct: 467 IACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDD--TVQYDLVSYIAVLSA 524

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
           C H GLV+ G + F  M +   L P   HY+CMVDL  RAG + EA   ++++P   D  
Sbjct: 525 CSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDAN 583

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           + GALLGAC+   N ++ +R  + L E++  + G Y++ S I+A    WD++ K+R LM+
Sbjct: 584 IWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMK 643

Query: 543 EKGVSKTPGCSWIGIDD 559
            +G  K PGCSW+ I D
Sbjct: 644 SRGAKKNPGCSWVQIYD 660



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 190/371 (51%), Gaps = 15/371 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           M R G++ D+ T+PFV   C++   +  G+ VH  VFK+G D D +V ++L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLG 228
           L+ AR++FDE+ ERD+VSWN++I   S  G   EA   +  M     + P+ ++++S+L 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
               L D  + + +  + VK  +D      +AL+D YGKCG++    +VF+  V K+ V+
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVS 180

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           WN++I   A  G   +A+  F  M  AG  P+ +T+  +L     +     GK +  ++ 
Sbjct: 181 WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSM 240

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           + G   DIF            G   +A  +F ++   N VSWNAMI+  A N    EA+ 
Sbjct: 241 RMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIR 300

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
              +M + G    PN VTF  VL AC   G +  G+ +   M    GL       + ++D
Sbjct: 301 FVIQMQETGEC--PNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLFVSNSLID 357

Query: 458 LYARAGHLSEA 468
           +YA+ G L  A
Sbjct: 358 MYAKCGCLHSA 368



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 39/413 (9%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           AS +FH + R N  ++N MI       +    +++   QM+  G  P+  T+  V  +CA
Sbjct: 267 ASTIFHNLDRRNIVSWNAMIANYALN-RLPLEAIRFVIQMQETGECPNAVTFTNVLPACA 325

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L  L  G  +H+   +IGL  D  VS+SLI MYA+CG L SAR VF+  R +D VS+N 
Sbjct: 326 RLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNI 384

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           +I GYS+     +++ LF  MR     PD ++ V V+ +C +L  L  GK V G  ++N 
Sbjct: 385 LIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNH 444

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +  + ++ ++L+D Y KCG +  A R+F+ ++ KDV +WN MI  Y   G    AI +F 
Sbjct: 445 LYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFE 504

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLG-KWVDKYASQRGLRHDIFCGSIDDALKVFE 369
            M+   V  D ++ I VLSAC+  G ++ G ++  +  +QR                   
Sbjct: 505 AMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR------------------- 545

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
                 E+ +  M+  L   G   EA  L +++        P+   +  +L AC   G V
Sbjct: 546 --LEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL-----PIAPDANIWGALLGACRIYGNV 598

Query: 430 DEGRR----LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           + GRR    LF+L     G      +Y  + ++YA  G   EA    E M  +
Sbjct: 599 ELGRRAAEHLFELKPQHCG------YYILLSNIYAETGRWDEANKIRELMKSR 645



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 213/438 (48%), Gaps = 43/438 (9%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK-RLG 114
           N LL+   +    N A  LF ++   +  ++N +I GL +    Y+ +   Y+ M  R  
Sbjct: 49  NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTII-GLLSVNGDYTEARNYYFWMILRSV 107

Query: 115 LKPDNFTYPFVFISCANLLALNHGVS-------VHSSVFKIGLDEDDHVSHSLITMYARC 167
           +KP+        +S  +LL ++  +        +H    K+GLD      ++L+  Y +C
Sbjct: 108 IKPN-------LVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKC 160

Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
           G + +  +VF+E  E++ VSWNS+I+G +  G   +A+  F  M +    P+ +T+ S+L
Sbjct: 161 GSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSIL 220

Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
               +L     GK + GF ++   + + ++ ++LIDMY K G    A  +F  +  +++V
Sbjct: 221 PVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIV 280

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           +WNAMI  YA N L  EAI    +M+  G  P+ +T   VL ACA +G L  GK +    
Sbjct: 281 SWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMG 340

Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + GL  D+F           CG +  A  VF +    +EVS+N +I   +      ++L
Sbjct: 341 VRIGLTSDLFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSL 399

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS--- 453
            LF  M   G   +P+ V+F+GV+SAC +   + +G+ +        G+  ++  YS   
Sbjct: 400 NLFSEMRLLG--KKPDVVSFVGVISACANLAALKQGKEV-------HGVALRNHLYSHLF 450

Query: 454 ---CMVDLYARAGHLSEA 468
               ++D Y + G +  A
Sbjct: 451 VSNSLLDFYTKCGRIDIA 468


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/430 (37%), Positives = 235/430 (54%), Gaps = 14/430 (3%)

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM-G 199
           VH+ V   G      +   L+ +    G +   R++F  +   D   + S+I   SK   
Sbjct: 31  VHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHN 90

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           ++  ++  + RM      P   T  SV+ SC DL  L  G+ + G V+ N    + Y+ +
Sbjct: 91  FSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQT 150

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
           AL+  YGKCG L  AR+VFD M ++ VVTWN+MI+ Y QNG + EAI LF+RMK  GV P
Sbjct: 151 ALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEP 210

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
           +  T + VLSACA +GA  LG WV +YA   GL  ++            CG++  A +VF
Sbjct: 211 NSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVF 270

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + M   N V+W AMIS    NG   +A+ LF  M + G    PN +TF+ VLSAC HAGL
Sbjct: 271 DSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNG--LLPNSITFVAVLSACAHAGL 328

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           V+EGRR+F+ M   + L+P+ EH+ C+VD+  RAG L EA++F++ + E+    +  A+L
Sbjct: 329 VNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAML 388

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
           GAC+  KN  +  +V +  L  E  N  +YVI S I+A     D    +R  M  K + K
Sbjct: 389 GACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKK 448

Query: 549 TPGCSWIGID 558
             G S I +D
Sbjct: 449 QVGYSTIDLD 458



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/412 (35%), Positives = 232/412 (56%), Gaps = 27/412 (6%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK----DFNYASLLFHQISRPNEYA 85
           LL+  P  K + Q+H  ++++      FLL ++++L       +Y   +F  +  P+ + 
Sbjct: 18  LLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFL 77

Query: 86  FNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           F  +IR  T+ +  +S +SL  Y +M    + P N+T+  V  SCA+L+AL HG  +H  
Sbjct: 78  FTSLIRS-TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGH 136

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
           V   G   D +V  +L++ Y +CG L +ARKVFD++R+R +V+WNSMISGY + G+AKEA
Sbjct: 137 VLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEA 196

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + LF RM+E    P+  T VSVL +C  LG  +LG WV  + V N +DLN  +G++LI+M
Sbjct: 197 IRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINM 256

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y +CG +  AR VFD+M  ++VV W AMI+ Y  NG  ++A+ LF+ M+  G+ P+ IT 
Sbjct: 257 YTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITF 316

Query: 325 IGVLSACASIGALDLGKWV-----DKYASQRGLRHDIF-------CGSIDDA---LKVFE 369
           + VLSACA  G ++ G+ V     ++Y     + H +         G +D+A   +K   
Sbjct: 317 VAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIH 376

Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           + P      W AM+ A     + H+   L  ++++   A+ P +     +LS
Sbjct: 377 EEPA--PAIWTAMLGAC----KMHKNFGLGAQVAEHRLASEPGNPAHYVILS 422


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 256/481 (53%), Gaps = 52/481 (10%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
           C N++ L     +H+ + K  L +   +   ++ +    G+ + A  +F  + + +   +
Sbjct: 24  CPNIVELK---KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLY 80

Query: 189 NSMISGYSKMGYAKEAVELFGRMR-----EEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           N+MI  Y        A+ ++ +M      E    PD+ T   V+ SC  L    LGK V 
Sbjct: 81  NAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVH 140

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN------------- 290
           G V K     N  + ++L++MY KC +L  A RVF+ M  +D V+WN             
Sbjct: 141 GHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMR 200

Query: 291 ------------------AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332
                             A+++ YA+ G   +A+  F RM+  G+ PD+I+L+ VL  CA
Sbjct: 201 RARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCA 260

Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
            +GAL+LGKW+  YA + G   +I            CGSID   ++F+ M   + +SW+ 
Sbjct: 261 QLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWST 320

Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
           MI  LA +GRA EA+ LF+ M K      P+ +TF+G+L+AC HAGL++EG R F+ M  
Sbjct: 321 MIVGLANHGRAREAIELFQEMQK--AKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKR 378

Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQ 501
            + + P  EHY C+V+L   +G L +A + V++MP K D  + G+LL +C+   N  ++ 
Sbjct: 379 DYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAV 438

Query: 502 RVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPK 561
             M+ LLE+E +++GNYV+ S ++A+L  WD  ++MR LMR K + KTPGCS I +D+  
Sbjct: 439 IAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMV 498

Query: 562 Q 562
           Q
Sbjct: 499 Q 499



 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 251/504 (49%), Gaps = 93/504 (18%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQI 78
           + +  + +LK CP+   +++IH  ++   + + +FL+ +++D+     +  YA+LLF  +
Sbjct: 13  MEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGV 72

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-------LKPDNFTYPFVFISCAN 131
           + PN + +N MIR      + Y  ++ +Y QM  LG       + PD FT+PFV  SCA 
Sbjct: 73  ADPNAFLYNAMIRAYKHN-KVYVLAITVYKQM--LGNPHGENPIFPDKFTFPFVVKSCAG 129

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L+  + G  VH  VFK G   +  V +SL+ MY +C  LD A +VF+E+ ERD VSWN++
Sbjct: 130 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTL 189

Query: 192 ISGYSKM--------------------------GYAK-----EAVELFGRMREEEFLPDE 220
           ISG+ ++                          GYA+     +A+E F RM+     PDE
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
           I+LVSVL  C  LG L LGKW+  +  K     N  + +ALI+MY KCG++   RR+FD 
Sbjct: 250 ISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  +DV++W+ MI   A +G + EAI LF  M+ A + P  IT +G+L+ACA  G L+ G
Sbjct: 310 MKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG 369

Query: 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVS-----WNAMISALAFNGRAHEA 395
                                   L+ FE M     +      +  +++ L  +GR  +A
Sbjct: 370 ------------------------LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405

Query: 396 LLLFERMSKEGGAARPNDVTFIGVLSACVHAG----LVDEGRRLFDLMSSSFGLIPKSEH 451
           L L ++M +     +P+   +  +LS+C   G     V     L +L  +  G      +
Sbjct: 406 LELVKKMPR-----KPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTG------N 454

Query: 452 YSCMVDLYARAGHLSEAWDFVERM 475
           Y  + +LYA  G     WD V RM
Sbjct: 455 YVLLSNLYADLG----KWDGVSRM 474



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 167/354 (47%), Gaps = 24/354 (6%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR 80
           +++   L+ +  KC S     ++  +M        N L+   + L     A  +F ++  
Sbjct: 152 TVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQD 211

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              +++  ++ G       Y+ +L+ + +M+ +G++PD  +   V   CA L AL  G  
Sbjct: 212 KTIFSWTAIVSGYARIGC-YADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKW 270

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
           +H    K G   +  V ++LI MYA+CG +D  R++FD+++ERD++SW++MI G +  G 
Sbjct: 271 IHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGR 330

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKMDLNFYMG- 258
           A+EA+ELF  M++ +  P  IT V +L +C   G L  G ++ E      K D N   G 
Sbjct: 331 AREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESM----KRDYNIEPGV 386

Query: 259 ---SALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNG-LSNEAIMLFNRMK 313
                L+++ G  G L  A  +   M  K D   W +++++   +G L    I + + ++
Sbjct: 387 EHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLE 446

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKW-----VDKYASQRGLRHDIFCGSID 362
               +     L+  L A       DLGKW     + K    + ++    C SI+
Sbjct: 447 LEPADTGNYVLLSNLYA-------DLGKWDGVSRMRKLMRSKSMKKTPGCSSIE 493



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 134/304 (44%), Gaps = 49/304 (16%)

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           E   V +L  C ++ +L   K +   +VK  +  + ++ + ++D+    G    A  +F 
Sbjct: 14  EDMFVPILKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFK 70

Query: 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM--KYAGVNP---DKITLIGVLSACASI 334
            + + +   +NAMI AY  N +   AI ++ +M     G NP   DK T   V+ +CA +
Sbjct: 71  GVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGL 130

Query: 335 GALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMI 383
              DLGK V  +  + G + +           + C S+DDA +VFE+M   + VSWN +I
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLI 190

Query: 384 SALAFNGRAHEALLLFERMSKE---------GGAAR--------------------PNDV 414
           S     G+   A  +FE M  +          G AR                    P+++
Sbjct: 191 SGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 250

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           + + VL  C   G ++ G+ +  + +   G +      + ++++YA+ G + +     ++
Sbjct: 251 SLVSVLPDCAQLGALELGKWI-HIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQ 309

Query: 475 MPEK 478
           M E+
Sbjct: 310 MKER 313


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 297/552 (53%), Gaps = 22/552 (3%)

Query: 27   LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
            L SL+  C S+        IH+  L + +     ++  ++++       + A  LF  +S
Sbjct: 551  LCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS 610

Query: 80   RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
            R +  ++N MI          + +LK   Q+      P++ T+     +C++  AL  G 
Sbjct: 611  RRDLISWNTMISSYVQNCNS-TDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 669

Query: 140  SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
             VH+ V ++ L  +  V +SLITMY +C  ++ A KVF  +   D+VS+N +I GY+ + 
Sbjct: 670  MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLE 729

Query: 200  YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV-LGKWVEGFVVKNKMDLNFYMG 258
               +A+++F  MR     P+ IT++++ GS     DL   G+ +  ++++     + Y+ 
Sbjct: 730  DGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA 789

Query: 259  SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            ++LI MY KCG L  +  +F+++ NK++V+WNA+I A  Q G   EA+ LF  M++AG  
Sbjct: 790  NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNK 849

Query: 319  PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
             D++ L   LS+CAS+ +L+ G  +     + GL  D +           CG +D+ L+V
Sbjct: 850  LDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQV 909

Query: 368  FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
              D  +  +  WN +IS  A  G   EA   F++M   G   +P+ VTF+ +LSAC HAG
Sbjct: 910  VPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATG--RKPDYVTFVALLSACSHAG 967

Query: 428  LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
            LVD+G   ++ M+SSFG+ P  +H  C+VDL  R G  +EA  F+E MP   ++++  +L
Sbjct: 968  LVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSL 1027

Query: 488  LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
            L + +  KN ++ ++  + LLE++  +   YV+ S ++A    W D  K+R+ M+   ++
Sbjct: 1028 LSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININ 1087

Query: 548  KTPGCSWIGIDD 559
            K P CSW+ + +
Sbjct: 1088 KRPACSWLKLKN 1099



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 224/462 (48%), Gaps = 28/462 (6%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNV 88
           SL  + P  +   Q+    L N +   N L+    +L   + A  LF ++   +  ++N 
Sbjct: 459 SLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNA 518

Query: 89  MIRGLTTAWQKYSHS------LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           MI         YSH         ++  M+  GL+PD  T   +   CA+    +HG  +H
Sbjct: 519 MI-------SMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIH 571

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S   +  LD    V ++L+ MY+  GKL  A  +F  +  RDL+SWN+MIS Y +   + 
Sbjct: 572 SLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNST 631

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A++  G++      P+ +T  S LG+C   G L+ GK V   V++  +  N  +G++LI
Sbjct: 632 DALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLI 691

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MYGKC ++  A +VF +M   D+V++N +I  YA      +A+ +F+ M+ AG+ P+ I
Sbjct: 692 TMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYI 751

Query: 323 TLIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           T+I +  + AS   L + G+ +  Y  + G   D +           CG+++ +  +F  
Sbjct: 752 TMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNS 811

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   N VSWNA+I+A    G   EAL LF  M   G   + + V     LS+C     ++
Sbjct: 812 ITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGN--KLDRVCLAECLSSCASLASLE 869

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
           EG +L  L   S GL   S   +  +D+Y + G + E    V
Sbjct: 870 EGMQLHGLGMKS-GLDSDSYVVNAAMDMYGKCGKMDEMLQVV 910



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 190/388 (48%), Gaps = 15/388 (3%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L+ Y QM+R G+  +   +  V   C +L     G+ V S V   GL     V++SLIT
Sbjct: 431 ALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLIT 490

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           M+   G++  A K+FD + E D +SWN+MIS YS  G   +   +F  MR     PD  T
Sbjct: 491 MFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATT 550

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           L S++  C        G  +    +++ +D +  + +AL++MY   G L  A  +F  M 
Sbjct: 551 LCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS 610

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            +D+++WN MI++Y QN  S +A+    ++ +   +P+ +T    L AC+S GAL  GK 
Sbjct: 611 RRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKM 670

Query: 343 VDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR 391
           V     Q  L+ ++            C S++DA KVF+ MP  + VS+N +I   A    
Sbjct: 671 VHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLED 730

Query: 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG-LVDEGRRLFDLMSSSFGLIPKSE 450
             +A+ +F  M   G   +PN +T I +  +   +  L + GR L   +  + G +    
Sbjct: 731 GTKAMQVFSWMRSAG--IKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRT-GFLSDEY 787

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
             + ++ +YA+ G+L  + +    +  K
Sbjct: 788 VANSLITMYAKCGNLESSTNIFNSITNK 815



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 178/367 (48%), Gaps = 21/367 (5%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G ++H+   + GL  + ++  +L+ +Y   G +  A+++F E+ ER++VSW +++   S 
Sbjct: 365 GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSS 424

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            GY +EA+  + +MR +    +     +V+  CG L + V G  V   V+ + +     +
Sbjct: 425 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSV 484

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++LI M+G  G +  A ++FD M   D ++WNAMI+ Y+  G+ ++  ++F+ M++ G+
Sbjct: 485 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 544

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PD  TL  ++S CAS      G  +     +  L   +             G + DA  
Sbjct: 545 RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 604

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F +M   + +SWN MIS+   N  + +AL    ++     +  PN +TF   L AC   
Sbjct: 605 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNES--PNHLTFSSALGACSSP 662

Query: 427 GLVDEGRRLFDL---MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
           G + +G+ +  +   +S    L+  +     ++ +Y +   + +A    + MP   D + 
Sbjct: 663 GALIDGKMVHAIVLQLSLQRNLLVGNS----LITMYGKCNSMEDAEKVFQSMPTH-DIVS 717

Query: 484 LGALLGA 490
              L+G 
Sbjct: 718 YNVLIGG 724



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 164/363 (45%), Gaps = 37/363 (10%)

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG- 234
           +FDE+ +R   +W + +SG  + G   +A E+   MRE         L S++ +C   G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 235 --DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
              +  G  +     +  +  N Y+G+AL+ +YG  G +  A+R+F  M  ++VV+W A+
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           + A + NG   EA+  + +M+  GV  +      V+S C S+     G  V       GL
Sbjct: 419 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 478

Query: 353 RHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
           ++ +             G + DA K+F+ M   + +SWNAMIS  +  G   +  L+F  
Sbjct: 479 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 538

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-----MSSSFGLIPKSEHYSCMV 456
           M   G   RP+  T   ++S C  +     G  +  L     + SS  +I      + +V
Sbjct: 539 MRHHG--LRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVI------NALV 590

Query: 457 DLYARAGHLSEA----WDFVERMPEKVDEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIE 511
           ++Y+ AG LS+A    W+   R     D I    ++ +  Q   +TD  + + QL    E
Sbjct: 591 NMYSAAGKLSDAEFLFWNMSRR-----DLISWNTMISSYVQNCNSTDALKTLGQLFHTNE 645

Query: 512 SSN 514
           S N
Sbjct: 646 SPN 648


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 297/552 (53%), Gaps = 22/552 (3%)

Query: 27  LLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQIS 79
           L SL+  C S+        IH+  L + +     ++  ++++       + A  LF  +S
Sbjct: 249 LCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS 308

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           R +  ++N MI          + +LK   Q+      P++ T+     +C++  AL  G 
Sbjct: 309 RRDLISWNTMISSYVQNCNS-TDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 367

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            VH+ V ++ L  +  V +SLITMY +C  ++ A KVF  +   D+VS+N +I GY+ + 
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLE 427

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL-VLGKWVEGFVVKNKMDLNFYMG 258
              +A+++F  MR     P+ IT++++ GS     DL   G+ +  ++++     + Y+ 
Sbjct: 428 DGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA 487

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++LI MY KCG L  +  +F+++ NK++V+WNA+I A  Q G   EA+ LF  M++AG  
Sbjct: 488 NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNK 547

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
            D++ L   LS+CAS+ +L+ G  +     + GL  D +           CG +D+ L+V
Sbjct: 548 LDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQV 607

Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
             D  +  +  WN +IS  A  G   EA   F++M   G   +P+ VTF+ +LSAC HAG
Sbjct: 608 VPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATG--RKPDYVTFVALLSACSHAG 665

Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           LVD+G   ++ M+SSFG+ P  +H  C+VDL  R G  +EA  F+E MP   ++++  +L
Sbjct: 666 LVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSL 725

Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
           L + +  KN ++ ++  + LLE++  +   YV+ S ++A    W D  K+R+ M+   ++
Sbjct: 726 LSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININ 785

Query: 548 KTPGCSWIGIDD 559
           K P CSW+ + +
Sbjct: 786 KRPACSWLKLKN 797



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 224/462 (48%), Gaps = 28/462 (6%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNV 88
           SL  + P  +   Q+    L N +   N L+    +L   + A  LF ++   +  ++N 
Sbjct: 157 SLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNA 216

Query: 89  MIRGLTTAWQKYSHS------LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
           MI         YSH         ++  M+  GL+PD  T   +   CA+    +HG  +H
Sbjct: 217 MI-------SMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIH 269

Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
           S   +  LD    V ++L+ MY+  GKL  A  +F  +  RDL+SWN+MIS Y +   + 
Sbjct: 270 SLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNST 329

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           +A++  G++      P+ +T  S LG+C   G L+ GK V   V++  +  N  +G++LI
Sbjct: 330 DALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLI 389

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
            MYGKC ++  A +VF +M   D+V++N +I  YA      +A+ +F+ M+ AG+ P+ I
Sbjct: 390 TMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYI 449

Query: 323 TLIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
           T+I +  + AS   L + G+ +  Y  + G   D +           CG+++ +  +F  
Sbjct: 450 TMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNS 509

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   N VSWNA+I+A    G   EAL LF  M   G   + + V     LS+C     ++
Sbjct: 510 ITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGN--KLDRVCLAECLSSCASLASLE 567

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFV 472
           EG +L  L   S GL   S   +  +D+Y + G + E    V
Sbjct: 568 EGMQLHGLGMKS-GLDSDSYVVNAAMDMYGKCGKMDEMLQVV 608



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 203/420 (48%), Gaps = 16/420 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF ++   N  ++  ++  L++       +L+ Y QM+R G+  +   +  V   C 
Sbjct: 98  AQRLFWEMPERNVVSWTALMVALSSN-GYLEEALRAYRQMRRDGVPCNANAFATVVSLCG 156

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +L     G+ V S V   GL     V++SLITM+   G++  A K+FD + E D +SWN+
Sbjct: 157 SLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNA 216

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MIS YS  G   +   +F  MR     PD  TL S++  C        G  +    +++ 
Sbjct: 217 MISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSS 276

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +D +  + +AL++MY   G L  A  +F  M  +D+++WN MI++Y QN  S +A+    
Sbjct: 277 LDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLG 336

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           ++ +   +P+ +T    L AC+S GAL  GK V     Q  L+ ++            C 
Sbjct: 337 QLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCN 396

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S++DA KVF+ MP  + VS+N +I   A      +A+ +F  M   G   +PN +T I +
Sbjct: 397 SMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAG--IKPNYITMINI 454

Query: 420 LSACVHAG-LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +   +  L + GR L   +  + G +      + ++ +YA+ G+L  + +    +  K
Sbjct: 455 HGSFASSNDLHNYGRPLHAYIIRT-GFLSDEYVANSLITMYAKCGNLESSTNIFNSITNK 513



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 178/367 (48%), Gaps = 21/367 (5%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G ++H+   + GL  + ++  +L+ +Y   G +  A+++F E+ ER++VSW +++   S 
Sbjct: 63  GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSS 122

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            GY +EA+  + +MR +    +     +V+  CG L + V G  V   V+ + +     +
Sbjct: 123 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSV 182

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++LI M+G  G +  A ++FD M   D ++WNAMI+ Y+  G+ ++  ++F+ M++ G+
Sbjct: 183 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 242

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PD  TL  ++S CAS      G  +     +  L   +             G + DA  
Sbjct: 243 RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 302

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +F +M   + +SWN MIS+   N  + +AL    ++     +  PN +TF   L AC   
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNES--PNHLTFSSALGACSSP 360

Query: 427 GLVDEGRRLFDL---MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
           G + +G+ +  +   +S    L+  +     ++ +Y +   + +A    + MP   D + 
Sbjct: 361 GALIDGKMVHAIVLQLSLQRNLLVGNS----LITMYGKCNSMEDAEKVFQSMPTH-DIVS 415

Query: 484 LGALLGA 490
              L+G 
Sbjct: 416 YNVLIGG 422



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 158/357 (44%), Gaps = 37/357 (10%)

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG---DLVL 238
           +R   +W + +SG  + G    A E+   MRE         L S++ +C   G    +  
Sbjct: 3   DRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIAC 62

Query: 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
           G  +     +  +  N Y+G+AL+ +YG  G +  A+R+F  M  ++VV+W A++ A + 
Sbjct: 63  GAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSS 122

Query: 299 NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358
           NG   EA+  + +M+  GV  +      V+S C S+     G  V       GL++ +  
Sbjct: 123 NGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSV 182

Query: 359 -----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG 407
                      G + DA K+F+ M   + +SWNAMIS  +  G   +  L+F  M   G 
Sbjct: 183 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHG- 241

Query: 408 AARPNDVTFIGVLSACVHAGLVDEGRRLFDL-----MSSSFGLIPKSEHYSCMVDLYARA 462
             RP+  T   ++S C  +     G  +  L     + SS  +I      + +V++Y+ A
Sbjct: 242 -LRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVI------NALVNMYSAA 294

Query: 463 GHLSEA----WDFVERMPEKVDEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIESSN 514
           G LS+A    W+   R     D I    ++ +  Q   +TD  + + QL    ES N
Sbjct: 295 GKLSDAEFLFWNMSRR-----DLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPN 346


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/352 (40%), Positives = 221/352 (62%), Gaps = 13/352 (3%)

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           PDE+T+VS++ +C  LG+L  GK +  +  +  +D N  + +A++DMY KC  +  A+ V
Sbjct: 9   PDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEV 68

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           F+ +  KDV++W +M++  A++G   E++ LF +M+   + PD+ITL+GVLSACA  GAL
Sbjct: 69  FNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGAL 128

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           D GK++     +  +  D+            CGSID AL+VF  M V N  +WNAMI  L
Sbjct: 129 DQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGL 188

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A +G   +A+ LF++M  E     P+DVTFI +L AC HAGLVDEG  +F  M + F + 
Sbjct: 189 AMHGHGEDAISLFDQM--EXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIE 246

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P+ EHY C+VDL  RA  + +A  F+E MP K + ++   LLGAC+   + D+++++ + 
Sbjct: 247 PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRR 306

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++E+E  + G YV+ S ++A +  WD + K+R  M+ KG+ KTPGCSWI ++
Sbjct: 307 VIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELN 358



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/289 (37%), Positives = 174/289 (60%), Gaps = 13/289 (4%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L+PD  T   +  +CA L  L  G  +HS   ++GLDE+  V+++++ MY +C  ++SA+
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           +VF+ IRE+D++SW SM+SG +K GY +E++ LF +M+  +  PDEITLV VL +C   G
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
            L  GK++   + K +++ +  + +AL+DMY KCG++  A +VF  M  ++V TWNAMI 
Sbjct: 127 ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIG 186

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQ 349
             A +G   +AI LF++M+   + PD +T I +L AC+  G +D G  +     +K+  +
Sbjct: 187 GLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIE 246

Query: 350 RGLRH-----DIFCGS--IDDALKVFEDMPV-TNEVSWNAMISALAFNG 390
             + H     D+ C +  +DDAL   E+MP+  N V W  ++ A    G
Sbjct: 247 PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 295



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 125/243 (51%), Gaps = 17/243 (6%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           D   A  +F++I   +  ++  M+ GL  +   +  SL L+ +M+   ++PD  T   V 
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGY-FQESLALFRKMQLHKIEPDEITLVGVL 119

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +CA   AL+ G  +H  + K  ++ D  +  +L+ MYA+CG +D A +VF  +R R++ 
Sbjct: 120 SACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVF 179

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
           +WN+MI G +  G+ ++A+ LF +M  ++ +PD++T +++L +C   G LV         
Sbjct: 180 TWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAG-LVDEGLAMFQA 238

Query: 247 VKNKMDLNFYMG--SALIDMYGKCGALVPARRVFDAM-------VNKDVVTWNAMITAYA 297
           +KNK  +   M     ++D+      L  AR+V DA+       +  + V W  ++ A  
Sbjct: 239 MKNKFQIEPRMEHYGCVVDL------LCRARKVDDALAFIENMPIKANSVLWATLLGACR 292

Query: 298 QNG 300
             G
Sbjct: 293 SGG 295



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           K   + PD++T++ ++ ACA +G L+ GK +  Y+ + GL  ++            C  I
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           + A +VF  +   + +SW +M+S LA +G   E+L LF +M        P+++T +GVLS
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLH--KIEPDEITLVGVLS 120

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
           AC   G +D+G+ +  L+   F +       + +VD+YA+ G +  A     RM
Sbjct: 121 ACAQTGALDQGKYIH-LLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 173


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 282/549 (51%), Gaps = 57/549 (10%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLI-NFIQKPNFLLIRIIDLKD----FNYASLLFHQ 77
           +   +L ++  C + K+++ IH ++LI + +    F++ +++ L       +YA  +F +
Sbjct: 1   MNPPILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDE 60

Query: 78  ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
           I++PN Y +  +I G     Q Y  +  L+ QM+R  +   NFT   V  + A L     
Sbjct: 61  ITQPNAYLWTSLIHGYVENRQ-YDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKG 119

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G +V+   F    ++D    + +I+ Y    ++D ARK FD + ER++VSW SMI GY K
Sbjct: 120 GQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVK 179

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G   EA  LF  M  ++                      L  W    +V   MD+  Y 
Sbjct: 180 AGDMAEAQVLFDSMPVKD----------------------LASW--NVMVSGYMDIGDYT 215

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
             A              R +FD M  K++VTW+ MI  YA+NG   +A+ LF R K   +
Sbjct: 216 NGA--------------RCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDI 261

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            PD+  ++G++SAC+ +G +D  + +        L  D+            CGSI+ AL+
Sbjct: 262 KPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQ 321

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           +FE     + + ++ MI+ALA +G   +A+ LF++M +     +P+ VTF+GVL+AC H 
Sbjct: 322 MFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRAN--IKPDSVTFLGVLTACNHG 379

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
           GLVDEGR+ F  M+  FG+ P  +HY+C+VDL  R G L EA++ +  MP     +V GA
Sbjct: 380 GLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGA 439

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
           LL AC+   N  +++     L +IE  NSGNY++ S I+A    W   AK+RA +RE  V
Sbjct: 440 LLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRV 499

Query: 547 SKTPGCSWI 555
            K  G SWI
Sbjct: 500 RKNRGSSWI 508


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/419 (38%), Positives = 239/419 (57%), Gaps = 47/419 (11%)

Query: 185 LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD--LGDLVLGKWV 242
           +VSW S I+ + + G   EA   F RM+     P+ IT +++L +C D  L  L  G  +
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSI 113

Query: 243 EGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
             +V K  +D  N  +G+AL+DMY KCG L  A  +FD M  ++ V+WN MI    +NG 
Sbjct: 114 HAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE 173

Query: 302 SNEAIMLFNRM-------------------------------KYAGVNPDKITLIGVLSA 330
             EAI+LF++M                               + AGV PD +T+I VL+A
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAA 233

Query: 331 CASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVTNEVSW 379
           CA++GAL LG W++++  ++  + +I            CG I  A +VFE MP  + VSW
Sbjct: 234 CANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSW 293

Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439
           N+MI   A NG A EAL  F  M KEG   RP+ V+F G L+AC H+GLVDEG + FD+M
Sbjct: 294 NSMIVGFALNGHAEEALEFFNLMRKEG--FRPDGVSFTGALTACSHSGLVDEGLQFFDIM 351

Query: 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499
             +  + P+ EHY C+VDLY+RAG L +A + +  MP K +E+VLG+LL AC+   +  +
Sbjct: 352 KRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGL 411

Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           ++R+M+ L E++  +  NYV+ S I+A +  WD ++K+R  M+  G+ K PG S I +D
Sbjct: 412 AERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMD 470



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 224/464 (48%), Gaps = 78/464 (16%)

Query: 107 YYQMKRLGLKPDNFTYPFVFISCAN--LLALNHGVSVHSSVFKIGLD-EDDHVSHSLITM 163
           + +M+  G++P++ T+  +  +C +  L  L  G S+H+ V K+GLD E+  V  +L+ M
Sbjct: 77  FSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDM 136

Query: 164 YARCGKLDSARKVFDEIR-------------------------------ERDLVSWNSMI 192
           Y++CG+LD A  +FDE+                                ERD +SW SMI
Sbjct: 137 YSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMI 196

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
            G+ K G  ++A+E F  M+     PD +T++SVL +C +LG L LG W+  FV+K    
Sbjct: 197 GGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFK 256

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            N  + ++LIDMY +CG +  AR+VF+ M  + +V+WN+MI  +A NG + EA+  FN M
Sbjct: 257 DNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLM 316

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372
           +  G  PD ++  G L+AC                S  GL        +D+ L+ F+ M 
Sbjct: 317 RKEGFRPDGVSFTGALTAC----------------SHSGL--------VDEGLQFFDIMK 352

Query: 373 VTNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
            T ++S     +  ++   +  GR  +AL +   M       +PN+V    +L+AC   G
Sbjct: 353 RTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANM-----PMKPNEVVLGSLLAACRTHG 407

Query: 428 LVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA 486
            V    RL   +     + P S+ +Y  + ++YA  G     WD   ++ +K+  + +  
Sbjct: 408 DVGLAERLMKYLCE---VDPGSDSNYVLLSNIYAAVGR----WDGASKVRKKMKALGIHK 460

Query: 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
             G    + +  + + V      +E+ N   Y +   +F  L++
Sbjct: 461 KPGFSSIEMDGSIHEFVAGDKTHVETQNI--YAMLDHLFLELRI 502



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 147/296 (49%), Gaps = 5/296 (1%)

Query: 7   AYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK 66
           AY R L     N   ++   L+ +  KC        +  +M +      N ++   +   
Sbjct: 115 AYVRKLGLDTEN--VMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNG 172

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
           +   A +LF Q+S  +  ++  MI G       +  +L+ + +M+  G++PD  T   V 
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKK-GCFEQALEWFREMQLAGVEPDYVTIISVL 231

Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
            +CANL AL  G+ ++  V K    ++  +S+SLI MY+RCG +  AR+VF+++ +R LV
Sbjct: 232 AACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLV 291

Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGF 245
           SWNSMI G++  G+A+EA+E F  MR+E F PD ++    L +C   G +  G ++ +  
Sbjct: 292 SWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIM 351

Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNG 300
               K+         L+D+Y + G L  A  V   M  K + V   +++ A   +G
Sbjct: 352 KRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHG 407



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 11/137 (8%)

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
           P+   VSW + I+    NG+  EA   F RM   G   RPN +TF+ +LSAC    L  E
Sbjct: 50  PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAG--VRPNHITFLTLLSACTDFPL--E 105

Query: 432 GRRLFDLMSS---SFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
           G R    + +     GL  ++    + +VD+Y++ G L  AW   + M  + + +    +
Sbjct: 106 GLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVR-NSVSWNTM 164

Query: 488 LGACQKQKNTDVSQRVM 504
           +  C   +N +V + ++
Sbjct: 165 IDGC--MRNGEVGEAIV 179


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/511 (34%), Positives = 274/511 (53%), Gaps = 17/511 (3%)

Query: 58  LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117
           L+    D   F  A  LF ++   +  A+  MI G T+    +S +  ++  M R G+KP
Sbjct: 47  LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSC-NHHSRAWNVFTNMLRDGVKP 105

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARC-GKLDSARK 175
           + FT   V  +C +L AL  G  VH    KIG      +V ++L+ MYA C   +D+AR 
Sbjct: 106 NAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARL 165

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VF++I  ++ VSW ++I+GY+    A   + +F +M  EE      +    + +C  +G 
Sbjct: 166 VFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGS 225

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
             LGK V   V+ +  + N  + +A++DMY +C     A+++F  M  KD +TWN +I  
Sbjct: 226 SNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAG 285

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD 355
           + +   S E++ +F++M   G +P+  T   V++ACA++  L  G+ +      RGL ++
Sbjct: 286 F-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNN 344

Query: 356 IF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK 404
           +            CG++ D+ K+F  M  TN VSW +M+     +G   EA+ LF  M  
Sbjct: 345 LELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMV- 403

Query: 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464
            G   +P+ + F+ VLSAC HAGLVDEG R F LM+S + + P  + Y+C+VDL +RAG 
Sbjct: 404 -GSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGR 462

Query: 465 LSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524
           + EA++ +E MP K DE +  ALLGAC+K K   + +     +LE++ + +G YV+ S  
Sbjct: 463 VKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNF 522

Query: 525 FANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
            A    W D A +R LMR     K  G SWI
Sbjct: 523 SAAEGNWADFASLRKLMRSTKSKKEVGRSWI 553


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/484 (33%), Positives = 261/484 (53%), Gaps = 44/484 (9%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-------- 169
           D   +  +  SC  L +L  G  VHS +   G  +D  +S+ L+  Y++ G+        
Sbjct: 61  DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120

Query: 170 -----------------------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
                                  L+SA+K+FDE+ ER++ +WN+MI+G ++  + K+A+ 
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALS 180

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
           LF  M    FLPDE TL SVL  C  L  L+ G+ V   ++K   +L+  +GS+L  MY 
Sbjct: 181 LFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYI 240

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           K G+L    ++  +M  + VV WN +I   AQNG   E +  +N MK AG  PDKIT + 
Sbjct: 241 KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVS 300

Query: 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTN 375
           VLSAC+ +  L  G+ +     + G    +             G ++D++K F D    +
Sbjct: 301 VLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFD 360

Query: 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435
            V W++MI+A  F+GR  EAL LF +M  E      N+VTF+ +L AC H+GL ++G   
Sbjct: 361 VVLWSSMIAAYGFHGRGEEALELFHQM--EDLKMEANEVTFLSLLYACSHSGLKEKGTEY 418

Query: 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495
           FDLM   + L P+ EHY+C+VDL  RAG L EA   +  MP + D I+   LL AC+  K
Sbjct: 419 FDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHK 478

Query: 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             ++++R+ + +++++  ++ +YV+ S I A+ + W + +++R  MR++ V K PG SW+
Sbjct: 479 EAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWL 538

Query: 556 GIDD 559
            + +
Sbjct: 539 ELKN 542



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 200/413 (48%), Gaps = 19/413 (4%)

Query: 27  LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
           LL+   K    K+   + + M    +   N L+   + L D   A  LF ++S  N   +
Sbjct: 103 LLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATW 162

Query: 87  NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146
           N MI GLT  ++    +L L+ +M  LG  PD FT   V   CA L +L  G  VH+ + 
Sbjct: 163 NAMIAGLTQ-FEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLL 221

Query: 147 KIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVE 206
           K G +    V  SL  MY + G L    K+   +  R +V+WN++I+G ++ G  +E + 
Sbjct: 222 KCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLN 281

Query: 207 LFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266
            +  M+   F PD+IT VSVL +C +L  L  G+ +   V+K        + S+LI MY 
Sbjct: 282 QYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYS 341

Query: 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326
           + G L  + + F    N DVV W++MI AY  +G   EA+ LF++M+   +  +++T + 
Sbjct: 342 RSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLS 401

Query: 327 VLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF--CGSIDDALKVFEDMPVT 374
           +L AC+  G  + G       V KY  +  + H     D+    G +++A  +   MPV 
Sbjct: 402 LLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQ 461

Query: 375 NE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
            + + W  +++A   +  A  A    ER+S+E     P D     +LS  +HA
Sbjct: 462 PDGIIWKTLLAACKLHKEAEMA----ERISEEIIKLDPLDAASYVLLSN-IHA 509



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 152/340 (44%), Gaps = 62/340 (18%)

Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV-----KNKMD- 252
           G  K+A + F      E   D      +L SC  LG L  GK V   ++     K+K   
Sbjct: 45  GRIKQAYDTF----TSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFIS 100

Query: 253 ---LNFY--MG--------------------SALIDMYGKCGALVPARRVFDAMVNKDVV 287
              LNFY  +G                    + LI+ Y + G L  A+++FD M  +++ 
Sbjct: 101 NHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIA 160

Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
           TWNAMI    Q   + +A+ LF  M   G  PD+ TL  VL  CA + +L  G+ V    
Sbjct: 161 TWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACL 220

Query: 348 SQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
            + G               I  GS+ D  K+ + MP+   V+WN +I+  A NG   E L
Sbjct: 221 LKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVL 280

Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM-----SSSFGLIPKSEH 451
             +  M   G   RP+ +TF+ VLSAC     + +G+++   +     SS   ++     
Sbjct: 281 NQYNMMKMAG--FRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVV----- 333

Query: 452 YSCMVDLYARAGHLSEAWD-FVERMPEKVDEIVLGALLGA 490
            S ++ +Y+R+G L ++   FV+R  E  D ++  +++ A
Sbjct: 334 -SSLISMYSRSGCLEDSIKAFVDR--ENFDVVLWSSMIAA 370


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/495 (33%), Positives = 273/495 (55%), Gaps = 17/495 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F  +  PN  ++N MI G    + +   + +L+  M++ G +PD FTY  +   CA
Sbjct: 307 ARQVFDNLRSPNRVSWNAMIAGYGEGFME--EAFRLFRDMQQKGFQPDRFTYASLLAICA 364

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
           +   LN G  +HS + +   + D  V+ +LI+MYA+CG L+ ARKVF+++ E++ VSWN+
Sbjct: 365 DRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNA 424

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
            I+   + G  KEA ++F +MR ++ +PD +T +++L SC    D   G+++ G + +  
Sbjct: 425 FIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWG 484

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           M  N  + +ALI MYG+CG L  AR VF  +  +D+ +WNAMI AY Q+G +  A  LF 
Sbjct: 485 MLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFI 544

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
           + K  G   DK T I VL A A++  LD G+ +     + GL  DI            CG
Sbjct: 545 KYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCG 604

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+ DA  VF+++   + V WNAM++A   +    +AL LF++M  EG    P+  T+  V
Sbjct: 605 SLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEG--VNPDSATYTSV 662

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L+AC   G ++ G++    +  +  +   + HY+CMV    RA  L EA +F+E +  + 
Sbjct: 663 LNACARLGAIEHGKKFHTQLKEA-AMETDTRHYACMVAALGRASLLKEAEEFIEEISSES 721

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS-SKIFANLKMWDDSAKMR 538
           D ++  +LL AC+   N  +++  ++ LL++++ +S         I+A    W+D + ++
Sbjct: 722 DALMWESLLVACRIHHNVGLAETAVEHLLDVKAQSSPAVCEQLMNIYAAAGRWEDVSVIK 781

Query: 539 ALMREKGVSKTPGCS 553
           A MRE G+     C+
Sbjct: 782 ATMREAGLLAPKSCT 796



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/490 (31%), Positives = 259/490 (52%), Gaps = 18/490 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+ +F  +   +  ++N MI G      +   ++ L+YQM+R GLKP+  ++  +  +C 
Sbjct: 105 ANNVFQSMEDKDVVSWNAMISGYALH-GRGQEAVDLFYQMQREGLKPNQNSFISILSACQ 163

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
             + L  G  +HS + K G + D +VS +LI MY +CG L+ ARKVF+E+RER++VSW +
Sbjct: 164 TPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTA 223

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MISGY + G +KEA  LF ++      P++++  S+LG+C +  DL  G  +  ++ +  
Sbjct: 224 MISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAG 283

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           ++    +G+ALI MY +CG+L  AR+VFD + + + V+WNAMI  Y + G   EA  LF 
Sbjct: 284 LEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFR 342

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+  G  PD+ T   +L+ CA    L+ GK +     +     D+            CG
Sbjct: 343 DMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCG 402

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           S+++A KVF  MP  N VSWNA I+    +G   EA  +F++M ++     P+ VTFI +
Sbjct: 403 SLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDD--VIPDHVTFITL 460

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           L++C      + GR +   +   +G++  +   + ++ +Y R G L++A +   R+  + 
Sbjct: 461 LNSCTSPEDFERGRYIHGKI-DQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRR- 518

Query: 480 DEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
           D     A++ A  Q   N       ++   E    +   ++   +  ANL+  D   K+ 
Sbjct: 519 DLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIH 578

Query: 539 ALMREKGVSK 548
            L+ + G+ K
Sbjct: 579 GLVEKAGLEK 588



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 211/393 (53%), Gaps = 16/393 (4%)

Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
           + + G++ +   Y      C    +L  G  VH  +     + D ++++ LI+MY++CG 
Sbjct: 42  LGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGS 101

Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
           ++ A  VF  + ++D+VSWN+MISGY+  G  +EAV+LF +M+ E   P++ + +S+L +
Sbjct: 102 IEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSA 161

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
           C     L  G+ +   + K   + +  + +ALI+MY KCG+L  AR+VF+ M  ++VV+W
Sbjct: 162 CQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSW 221

Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
            AMI+ Y Q+G S EA +LF ++  +G  P+K++   +L AC +   L+ G  +  Y  Q
Sbjct: 222 TAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQ 281

Query: 350 RGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            GL  ++            CGS+ +A +VF+++   N VSWNAMI+     G   EA  L
Sbjct: 282 AGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYG-EGFMEEAFRL 340

Query: 399 FERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458
           F  M ++G   +P+  T+  +L+ C     ++ G+ L   +  +          + ++ +
Sbjct: 341 FRDMQQKG--FQPDRFTYASLLAICADRADLNRGKELHSQIVRT-AWEADVTVATALISM 397

Query: 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           YA+ G L EA     +MPEK + +   A +  C
Sbjct: 398 YAKCGSLEEARKVFNQMPEK-NAVSWNAFIACC 429


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 281/554 (50%), Gaps = 28/554 (5%)

Query: 29  SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
           SLL +C     V+++H Q+    + +  FL   ++D        + A L F +I+  N +
Sbjct: 40  SLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAH 99

Query: 85  AFNVMIRGLTTAWQKYSH---SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           ++N+++     A+ +  H   +  L++ M   G++P+  T     ++C     L  G  +
Sbjct: 100 SWNILM----AAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKL 155

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           +  +    L+ D HV  SLITMY RC +++ A + FD   E+D+V W +MIS Y+     
Sbjct: 156 NELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRT 215

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSA 260
             A+EL  RM  E       T VS+L +C    DL  G           +D  +  +   
Sbjct: 216 SRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGT 275

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           L+++YGKCG +  ARRV DAM  +  V+W AMI AYAQNG + EAI LF  M   G  P 
Sbjct: 276 LVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPS 335

Query: 321 KITLIGVLSACASIGALDLGKWVD-KYASQRGLRHDIF-----------CGSIDDALKVF 368
            ITLI V+ +CA +G L LGK +  +  S       +            CG+++ A +VF
Sbjct: 336 DITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVF 395

Query: 369 EDMPVTNE--VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           E +P+     V+W AMI A A NG   EA+ LF+ M  +GG   PN VTF+ VL AC H 
Sbjct: 396 ECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGG-TEPNRVTFLSVLCACSHL 454

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLG 485
           G +++    F  M   FG+ P  +HY C+VDL  RAG L EA   + R  + + D +   
Sbjct: 455 GQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWI 514

Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
           A L ACQ   + + SQR  + + E+E  N    V+ S ++A      D A++R  M+  G
Sbjct: 515 AFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSG 574

Query: 546 VSKTPGCSWIGIDD 559
           V K  G SWI I++
Sbjct: 575 VKKFAGRSWIEINN 588


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 288/537 (53%), Gaps = 24/537 (4%)

Query: 41  QQIHTQMLIN----FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
           QQ+H   L       +   N L+     L+    A  +F+ +S  +  ++N +I G+  +
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 97  WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL---LALNHGVSVHSSVFKIGLDED 153
             +   ++ L+ Q+ R GLKPD++T   V  + ++L   L+L+  + VH+   K     D
Sbjct: 402 DLEV-EAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHA--IKTNNVAD 458

Query: 154 DHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
             VS +LI  Y+R   +  A  +F      DLV+WN+M+SGY++     + +ELF  M +
Sbjct: 459 SFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHK 517

Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273
           +    D+ TL +VL +CG L  +  GK V  + +K+  DL+ ++ S ++DMY KCG +  
Sbjct: 518 QGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA 577

Query: 274 ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
           A+  FD++   D V W  +I+   +NG    A+ +F++M+  GV PD+ T+  +  A + 
Sbjct: 578 AQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSC 637

Query: 334 IGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAM 382
           + AL+ G+ +   A +     D F           CGSIDDA  +F+ + + N  +WNAM
Sbjct: 638 LTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAM 697

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           +  LA +G   EAL LF++M   G   +P+ VTFIGVLSAC H+GLV E  +    M   
Sbjct: 698 LVGLAQHGEGKEALQLFKQMESLG--IKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRD 755

Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
           +G+ P+ EHYSC+ D   RAG + EA + ++ M  +    +   LL AC+ Q +T+  +R
Sbjct: 756 YGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKR 815

Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           V   LLE+E  +S  YV+ S ++A    WD+    R +M+   V K PG SWI + +
Sbjct: 816 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 872



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 213/429 (49%), Gaps = 27/429 (6%)

Query: 61  RIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF 120
           ++   ++ N AS +   ISR      N ++ G   A Q YS  LK +  M    L+ D  
Sbjct: 271 QVKSFENGNDASAVSEIISR------NKILSGYLHAGQ-YSALLKCFMDMVESDLECDQV 323

Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
           T+  V  +   L +L  G  VH    K+GLD    VS+SLI MY +  K+  AR VF+ +
Sbjct: 324 TFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNM 383

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD-LVLG 239
            ERDL+SWNS+I+G ++     EAV LF ++      PD  T+ SVL +   L + L L 
Sbjct: 384 SERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLS 443

Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN 299
           K +    +K     + ++ +ALID Y +   +  A  +F    N D+V WNAM++ Y Q+
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQS 502

Query: 300 GLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
              ++ + LF  M   G   D  TL  VL  C  + A++ GK V  YA + G   D++  
Sbjct: 503 HDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 562

Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
                    CG +  A   F+ +PV ++V+W  +IS    NG    AL +F +M   G  
Sbjct: 563 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVL 622

Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLS 466
                +  +   S+C+ A  +++GR++    +++  L   S+ +  + +VD+YA+ G + 
Sbjct: 623 PDEFTIATLAKASSCLTA--LEQGRQIH---ANALKLNCTSDPFVGTSLVDMYAKCGSID 677

Query: 467 EAWDFVERM 475
           +A+   +R+
Sbjct: 678 DAYCLFKRI 686



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 15/338 (4%)

Query: 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224
           +  G++ S     D     +++S N ++SGY   G     ++ F  M E +   D++T +
Sbjct: 267 SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFI 326

Query: 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK 284
            VL +   L  L LG+ V    +K  +DL   + ++LI+MY K   +  AR VF+ M  +
Sbjct: 327 LVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSER 386

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG-ALDLGKWV 343
           D+++WN++I   AQ+ L  EA+ LF ++   G+ PD  T+  VL A +S+   L L K +
Sbjct: 387 DLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQI 446

Query: 344 DKYASQRGLRHDIFCG-------SIDDALKVFEDMPVTNE---VSWNAMISALAFNGRAH 393
             +A +     D F         S +  +K  E +   N    V+WNAM+S    +   H
Sbjct: 447 HVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGH 506

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           + L LF  M K+G   R +D T   VL  C     +++G+++      S G        S
Sbjct: 507 KTLELFALMHKQG--ERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSS 563

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
            ++D+Y + G +S A    + +P   D++    L+  C
Sbjct: 564 GILDMYVKCGDMSAAQFAFDSIPVP-DDVAWTTLISGC 600



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 111/192 (57%), Gaps = 5/192 (2%)

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G   H+ +  +  + +  + ++LI+MY++CG L  AR+VFD++ ERDLVSWNS+++ Y++
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 198 -----MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
                +   KEA  LF  +R++      +TL  +L  C   G +   +   G+  K  +D
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLD 184

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
            + ++  AL+++Y K G +   R +F+ M  +DVV WN M+ AY + G   EAI L +  
Sbjct: 185 GDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 244

Query: 313 KYAGVNPDKITL 324
             +G++P++ITL
Sbjct: 245 HTSGLHPNEITL 256



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 136/294 (46%), Gaps = 45/294 (15%)

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           S H    KIGLD DD V+ +L+ +Y + GK+   R +F+E+  RD+V WN M+  Y +MG
Sbjct: 173 SFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMG 232

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           + +EA++L          P+EITL  +    GD  D   G+ V+ F   N          
Sbjct: 233 FKEEAIDLSSAFHTSGLHPNEITLRLLSRISGD--DSEAGQ-VKSFENGN---------- 279

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
                              DA    ++++ N +++ Y   G  +  +  F  M  + +  
Sbjct: 280 -------------------DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLEC 320

Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFCG--SIDDALKVF 368
           D++T I VL+    + +L LG+ V   A + GL           +++C    I  A  VF
Sbjct: 321 DQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVF 380

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            +M   + +SWN++I+ +A +    EA+ LF ++ + G   +P+  T   VL A
Sbjct: 381 NNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG--LKPDHYTMTSVLKA 432



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 18/198 (9%)

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           DL+LGK     ++  + +   ++ + LI MY KCG+L  ARRVFD M  +D+V+WN+++ 
Sbjct: 61  DLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILA 120

Query: 295 AYAQNGLS-----NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
           AYAQ+         EA +LF  ++   V   ++TL  +L  C   G +   +    YA +
Sbjct: 121 AYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACK 180

Query: 350 RGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398
            GL  D F            G + +   +FE+MP  + V WN M+ A    G   EA+ L
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 399 FERMSKEGGAARPNDVTF 416
                  G    PN++T 
Sbjct: 241 SSAFHTSG--LHPNEITL 256


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 253/466 (54%), Gaps = 43/466 (9%)

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +N  + +H+ + + G  +D  +   L+   ++C  +D A ++F      ++  + ++I G
Sbjct: 62  INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG 121

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           +   G   EA++L+ RM  E  LPD   + S+L +CG    L  G+ V    +K     N
Sbjct: 122 FVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSN 181

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVN------------------------------K 284
             +   ++++YGKCG L  ARRVF+ M                                K
Sbjct: 182 RLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRK 241

Query: 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
           D V W AMI  + +N  +N A+  F  M+   V P++ T++ VLSAC+ +GAL++G+WV 
Sbjct: 242 DTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH 301

Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
            Y  +  +  ++F           CGSID+A  VF++M   + +++N MIS L+ NG++ 
Sbjct: 302 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 361

Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
           +A+ LF  M   G   RP +VTF+GVL+AC H GLVD G  +F  M+  + + P+ EHY 
Sbjct: 362 QAIELFRVMV--GRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYG 419

Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
           CMVDL  R G L EA+D +  M    D I+LG LL AC+  KN ++ ++V + L +   +
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQA 479

Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           +SG YV+ S ++A+   W ++A++RA M+E G+ K PGCS I +++
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 218/431 (50%), Gaps = 50/431 (11%)

Query: 21  SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFH 76
           SL +++++SLL++      V  IH Q++ N   +  F++  ++         +YAS +F 
Sbjct: 46  SLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQ 105

Query: 77  QISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136
               PN Y +  +I G  ++   Y  +++LY +M    + PDN+    +  +C + LAL 
Sbjct: 106 YTHNPNVYLYTALIDGFVSSGN-YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 164

Query: 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE----------------- 179
            G  VHS   K+G   +  V   ++ +Y +CG+L  AR+VF+E                 
Sbjct: 165 EGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSD 224

Query: 180 -------------IRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226
                        +R +D V W +MI G+ +      A+E F  M+ E   P+E T+V V
Sbjct: 225 QGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCV 284

Query: 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286
           L +C  LG L +G+WV  ++ K +++LN ++G+ALI+MY +CG++  A+ VFD M ++DV
Sbjct: 285 LSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDV 344

Query: 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG------ 340
           +T+N MI+  + NG S +AI LF  M    + P  +T +GVL+AC+  G +D G      
Sbjct: 345 ITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHS 404

Query: 341 ----KWVDKYASQRGLRHDIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
                 V+      G   D+    G +++A  +   M +T +   + M+  L    + H+
Sbjct: 405 MARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPD---HIMLGTLLSACKMHK 461

Query: 395 ALLLFERMSKE 405
            L L E+++KE
Sbjct: 462 NLELGEQVAKE 472


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 241/441 (54%), Gaps = 51/441 (11%)

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           S++T YA+ G L+SAR+ FDE+ ER +VSWN+M S Y++    KEA+ LF +M EE   P
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITP 256

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM-------------- 264
           D+ T V  + SC  +GD  L   +   + +  + LN ++ +AL+DM              
Sbjct: 257 DDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIF 316

Query: 265 ------------------YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
                             Y + G L  AR +FD M  +DVV+WN+MI  YAQNG S  +I
Sbjct: 317 DELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSI 376

Query: 307 MLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
            LF  M     + PD++T+  VLSAC  IGAL L  WV     ++ ++  I         
Sbjct: 377 ELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFM 436

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CGS+ DA ++F+ M   + VS+N +IS  A NG   EA+ L   M +EG    P+ V
Sbjct: 437 YSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEG--IEPDHV 494

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T+IGVL+AC HAGL++EG+ +F  + +     P  +HY+CMVDL  RAG L EA   ++ 
Sbjct: 495 TYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQS 549

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP K    V G+LL A +  K   + +     L E+E  N GNYV+ S I+A+   W+D 
Sbjct: 550 MPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDV 609

Query: 535 AKMRALMREKGVSKTPGCSWI 555
            ++R +M++ G+ K+ G SW+
Sbjct: 610 KRVREMMKKGGLKKSVGMSWV 630



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 217/498 (43%), Gaps = 95/498 (19%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF----LLIRIIDLKDF-NYASLLFHQISR 80
           +L++L  K  + + ++Q H  ++ N +   N+    LLI    L     Y   +F     
Sbjct: 3   ELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPS 62

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+   ++ M++   +    ++  + L+     L L+P  F Y ++       LA   G  
Sbjct: 63  PDASVYSCMLK-YYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLI-----KLAGKSGNL 116

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H+ V K+G  +D  + ++++ MYA+ G++D AR +F+++ ER L  WNSMISG  K G 
Sbjct: 117 FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 176

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             EAV LF  M                                          N    ++
Sbjct: 177 ETEAVVLFNMMPAR---------------------------------------NIITWTS 197

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           ++  Y K G L  ARR FD M  + VV+WNAM +AYAQ     EA+ LF++M   G+ PD
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPD 257

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------------------- 357
             T +  +S+C+SIG   L   + +   Q+ +  + F                       
Sbjct: 258 DTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFD 317

Query: 358 --------------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
                                G +  A ++F++MP  + VSWN+MI+  A NG +  ++ 
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF+ M       +P++VT   VLSAC H G +     + D++      +  S  ++ ++ 
Sbjct: 378 LFKEMI-SCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISG-FNSLIF 435

Query: 458 LYARAGHLSEAWDFVERM 475
           +Y++ G +++A    + M
Sbjct: 436 MYSKCGSVADAHRIFQTM 453



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 149/347 (42%), Gaps = 69/347 (19%)

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           ++A    +DS   +F      D   ++ M+  YS+MG   + V LF         P    
Sbjct: 46  LHAHPAYVDS---IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFV 102

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
            + ++   G  G+L        +V+K     + ++ +A++DMY K G +  AR +F+ M 
Sbjct: 103 YIYLIKLAGKSGNL-----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMA 157

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            + +  WN+MI+   ++G   EA++LFN M    +    IT   +++  A +G L     
Sbjct: 158 ERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDL----- 208

Query: 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
                              + A + F++MP  + VSWNAM SA A      EAL LF +M
Sbjct: 209 -------------------ESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249

Query: 403 SKEGGAARPNDVTFIGVLSACVHAG---LVDEGRRLFDL---------------MSSSFG 444
            +EG    P+D T++  +S+C   G   L D   R+ D                M + FG
Sbjct: 250 LEEG--ITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFG 307

Query: 445 LIPKSEH-------------YSCMVDLYARAGHLSEAWDFVERMPEK 478
            +  + +             ++ M+  Y R G LS A +  + MP++
Sbjct: 308 NLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKR 354



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLG 114
           N ++     +   + A  LF  + + +  ++N MI G     +  + S++L+ +M   + 
Sbjct: 329 NIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGES-AMSIELFKEMISCMD 387

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           ++PD  T   V  +C ++ AL     V   V +  +       +SLI MY++CG +  A 
Sbjct: 388 IQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAH 447

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           ++F  +  RD+VS+N++ISG++  G+ KEA++L   M EE   PD +T + VL +C   G
Sbjct: 448 RIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAG 507

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            L  GK V  F       ++ Y  + ++D+ G+ G L  A+ +  +M
Sbjct: 508 LLNEGKNV--FKSIQAPTVDHY--ACMVDLLGRAGELDEAKMLIQSM 550


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 241/441 (54%), Gaps = 51/441 (11%)

Query: 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
           S++T YA+ G L+SAR+ FDE+ ER +VSWN+M S Y++    KEA+ LF +M EE   P
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITP 256

Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM-------------- 264
           D+ T V  + SC  +GD  L   +   + +  + LN ++ +AL+DM              
Sbjct: 257 DDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIF 316

Query: 265 ------------------YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
                             Y + G L  AR +FD M  +DVV+WN+MI  YAQNG S  +I
Sbjct: 317 DELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSI 376

Query: 307 MLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
            LF  M     + PD++T+  VLSAC  IGAL L  WV     ++ ++  I         
Sbjct: 377 ELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFM 436

Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
              CGS+ DA ++F+ M   + VS+N +IS  A NG   EA+ L   M +EG    P+ V
Sbjct: 437 YSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEG--IEPDHV 494

Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
           T+IGVL+AC HAGL++EG+ +F  + +     P  +HY+CMVDL  RAG L EA   ++ 
Sbjct: 495 TYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQS 549

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           MP K    V G+LL A +  K   + +     L E+E  N GNYV+ S I+A+   W+D 
Sbjct: 550 MPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDV 609

Query: 535 AKMRALMREKGVSKTPGCSWI 555
            ++R +M++ G+ K+ G SW+
Sbjct: 610 KRVREMMKKGGLKKSVGMSWV 630



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 217/498 (43%), Gaps = 95/498 (19%)

Query: 26  KLLSLLKKCPSTKTVQQIHTQMLINFIQKPNF----LLIRIIDLKDF-NYASLLFHQISR 80
           +L++L  K  + + ++Q H  ++ N +   N+    LLI    L     Y   +F     
Sbjct: 3   ELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPS 62

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
           P+   ++ M++   +    ++  + L+     L L+P  F Y ++       LA   G  
Sbjct: 63  PDASVYSCMLK-YYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLI-----KLAGKSGNM 116

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H+ V K+G  +D  + ++++ MYA+ G++D AR +F+++ ER L  WNSMISG  K G 
Sbjct: 117 FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 176

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             EAV LF  M                                          N    ++
Sbjct: 177 ETEAVVLFNMMPAR---------------------------------------NIITWTS 197

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
           ++  Y K G L  ARR FD M  + VV+WNAM +AYAQ     EA+ LF++M   G+ PD
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPD 257

Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------------------- 357
             T +  +S+C+SIG   L   + +   Q+ +  + F                       
Sbjct: 258 DTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFD 317

Query: 358 --------------------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
                                G +  A ++F++MP  + VSWN+MI+  A NG +  ++ 
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF+ M       +P++VT   VLSAC H G +     + D++      +  S  ++ ++ 
Sbjct: 378 LFKEMI-SCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISG-FNSLIF 435

Query: 458 LYARAGHLSEAWDFVERM 475
           +Y++ G +++A    + M
Sbjct: 436 MYSKCGSVADAHRIFQTM 453



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 56  NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM-KRLG 114
           N ++     +   + A  LF  + + +  ++N MI G     +  + S++L+ +M   + 
Sbjct: 329 NIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGES-AMSIELFKEMISCMD 387

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           ++PD  T   V  +C ++ AL     V   V +  +       +SLI MY++CG +  A 
Sbjct: 388 IQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAH 447

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           ++F  +  RD+VS+N++ISG++  G+ KEA++L   M EE   PD +T + VL +C   G
Sbjct: 448 RIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAG 507

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
            L  GK V  F       ++ Y  + ++D+ G+ G L  A+ +  +M
Sbjct: 508 LLNEGKNV--FKSIQAPTVDHY--ACMVDLLGRAGELDEAKMLIQSM 550


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 269/498 (54%), Gaps = 15/498 (3%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  +F ++   +   +N M+ G +     ++ +L L+  M+R GL    FT+  V     
Sbjct: 194 ARRVFQEMPHRDSVTYNAMMMGCSKE-GSHAEALDLFAAMRRKGLAATRFTFSTVLTVAT 252

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +  L  G  VH  V +     +  V++SL+  Y++C  LD  +K+F E+ ERD VS+N 
Sbjct: 253 GVGDLCLGRQVHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNV 311

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           MI+GY+    A   + LF  M+   F    +   S+L   G +  + +GK +   +V   
Sbjct: 312 MIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLG 371

Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
           +     +G+ALIDMY KCG L  A+  F    +K  V+W AMIT   QNG   EA+ LF 
Sbjct: 372 LSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFC 431

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            M+ AG++PD+ T    + A +++  + LG+ +  Y  + G    +F           CG
Sbjct: 432 GMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCG 491

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D+AL+ F++MP  N +SWNA+ISA A  G+A  A+ +FE M   G   +P+ VTF+ V
Sbjct: 492 CLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYG--FKPDSVTFLSV 549

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV 479
           LSAC H GL +E  + F+LM   +G+ P  EHYSC++D   R G   +  + +  MP + 
Sbjct: 550 LSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFED 609

Query: 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539
           D I+  ++L +C+   N D+++   + L  + S+++  YVI S IFA    W+D+A ++ 
Sbjct: 610 DPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKK 669

Query: 540 LMREKGVSKTPGCSWIGI 557
           +MR++G+ K  G SW+ +
Sbjct: 670 IMRDRGLRKETGYSWVEV 687



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 197/413 (47%), Gaps = 28/413 (6%)

Query: 86  FNVMIRGLTTA-WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV----- 139
           + VMI    +A   + S ++ L+  M R G+ PD  T   V     NL   + G      
Sbjct: 102 WTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVL----NLPPASGGTAAAII 157

Query: 140 --SVHSSVFKIGLDEDDHV-SHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYS 196
             S+H    K+GL   + V  ++L+  Y + G L +AR+VF E+  RD V++N+M+ G S
Sbjct: 158 IASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCS 217

Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
           K G   EA++LF  MR +       T  +VL     +GDL LG+ V G V +     N +
Sbjct: 218 KEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSS-NVF 276

Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
           + ++L+D Y KC  L   +++F  M+ +D V++N MI  YA N  ++  + LF  M+   
Sbjct: 277 VNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLS 336

Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDAL 365
            +   +    +LS   S+  + +GK +       GL           D++  CG +D A 
Sbjct: 337 FDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAK 396

Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
             F +      VSW AMI+    NG+  EAL LF  M + G    P+  TF   + A  +
Sbjct: 397 TNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAG--LSPDRATFSSTIKASSN 454

Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             ++  GR+L   +  S G +      S ++D+Y + G L EA    + MPE+
Sbjct: 455 LAMIGLGRQLHSYLIRS-GHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPER 506



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 126/274 (45%), Gaps = 33/274 (12%)

Query: 261 LIDMYGKCGALVPARRVFDAMVN--KDVVTWNAMITAYAQ--NGLSNEAIMLFNRMKYAG 316
           ++  Y + G L  A  +F +     +D VTW  MI A+A      +++A+ LF  M   G
Sbjct: 72  MLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREG 131

Query: 317 VNPDKITLIGVLS---ACASIGALDLGKWVDKYASQRGLRH----------DIFC--GSI 361
           V PD++T+  VL+   A     A  +   +  +A + GL H          D +C  G +
Sbjct: 132 VAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLL 191

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
             A +VF++MP  + V++NAM+   +  G   EAL LF  M ++G AA     TF  VL+
Sbjct: 192 AAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAA--TRFTFSTVLT 249

Query: 422 ACVHAGLVDEGRRLFDLM---SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                G +  GR++  L+   +SS   +  S     ++D Y++   L E       M E+
Sbjct: 250 VATGVGDLCLGRQVHGLVARATSSNVFVNNS-----LLDFYSKCDCLDEMKKLFHEMIER 304

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
            D +    ++      +   +   V++L  E++S
Sbjct: 305 -DNVSYNVMIAGYAWNRCASI---VLRLFREMQS 334


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/434 (37%), Positives = 247/434 (56%), Gaps = 19/434 (4%)

Query: 142 HSSVFKIGLDEDDHVSHSLITMYA--RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
           H+ + +  L  +   S  LI+  A    G L+ ARK+F +++  D    N+MI GY++  
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQ 90

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
              EAV L+  M E     D  T   VL +C  LG + LG+     V+KN    + ++ +
Sbjct: 91  NPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVIN 150

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVN 318
           ALI  Y  CG+   A  VFD    +DVVTWN MI A+   GLS +A  L + M K   + 
Sbjct: 151 ALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLR 210

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRG---LRHDIF-----------CGSIDDA 364
           PD++T++ ++ ACA +G L+ GK++  Y+ +     +  D+            CGSID A
Sbjct: 211 PDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLA 270

Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
           L+VF  M V N  +WNA+I  LA +G   +A+ LF++M  E     P+DVTFI +L AC 
Sbjct: 271 LQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQM--EHDKLMPDDVTFIALLCACS 328

Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           HAGLVDEG  +F  M + F + P+ EHY C+VDL  RA  + +A  F+E MP K + ++ 
Sbjct: 329 HAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLW 388

Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
             LLGAC+   + D+++++ + ++E+E  + G YV+ S ++A +  WD + K+R  M+ K
Sbjct: 389 ATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNK 448

Query: 545 GVSKTPGCSWIGID 558
           G+ KTPGCSWI ++
Sbjct: 449 GIEKTPGCSWIELN 462



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 212/397 (53%), Gaps = 27/397 (6%)

Query: 20  PSLLREKLLS---LLKKCPSTKTVQQIHTQML-INFIQKPNF--LLIRIIDLK---DFNY 70
           PS    KL+S   L   C S    +Q H  +L  + +  P F   LI  + L    D NY
Sbjct: 4   PSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNY 63

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A  LF Q+  P+ +  N MIRG   +   Y  ++ LYY M   G+  DN+TYPFV  +CA
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARSQNPYE-AVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            L A+  G   H  V K G   D  V ++LI  Y  CG    A  VFDE   RD+V+WN 
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 191 MISGYSKMGYAKEAVELFGRMRE-EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF---V 246
           MI+ +   G +++A +L   M + +   PDE+T+VS++ +C  LG+L  GK++  +   +
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
            K +++ +  + +AL+DMY KCG++  A +VF  M  ++V TWNA+I   A +G   +AI
Sbjct: 243 DKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAI 302

Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DI 356
            LF++M++  + PD +T I +L AC+  G +D G  +     +K+  +  + H     D+
Sbjct: 303 SLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDL 362

Query: 357 FCGS--IDDALKVFEDMPV-TNEVSWNAMISALAFNG 390
            C +  +DDAL   E+MP+  N V W  ++ A    G
Sbjct: 363 LCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 399


>gi|357461849|ref|XP_003601206.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
 gi|355490254|gb|AES71457.1| hypothetical protein MTR_3g077200 [Medicago truncatula]
          Length = 553

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/541 (32%), Positives = 280/541 (51%), Gaps = 19/541 (3%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYA 85
           L   C S   V+Q+H  +L   + K  F   +II L  FN    YA  +F + S  + + 
Sbjct: 12  LTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHVFDKTSTRSVFL 71

Query: 86  FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
           +N MIR    A +++S+++ L+  M    ++PDN+TY     +CA+         VH S 
Sbjct: 72  WNSMIRAFAKA-RRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGSA 130

Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
             +GL  D     +L++ Y++ G +  AR+VFD I E DLV WNS+IS Y   G  +  +
Sbjct: 131 VSVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGI 190

Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
           ++F  MR     PD  TL  +LG   D   L +G+ + G   K+ +D + ++GS L+ MY
Sbjct: 191 QMFSSMRLAGKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDCHVGSLLVSMY 250

Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            +C  +  A RVF  + N D+VTW+A+I+ Y+Q G   +A++ F ++       D + + 
Sbjct: 251 SRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQCGEYQKALLFFRKLNMKSKKLDSVLIA 310

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDMPVT 374
            VL++   +  +  G  +  Y  + GL  D+            CG +     VF  M   
Sbjct: 311 TVLASITQMANVLPGCEIHGYVLRHGLESDVKVSSALIDMYSKCGFLHLGTCVFRIMLER 370

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           N +S+N+MI A   +G A +A  +F+ M ++G    P++ TF  +LSAC HAGLV +GR 
Sbjct: 371 NIISYNSMILAYGLHGCASQAFTMFDEMLQKG--LVPDEGTFSALLSACCHAGLVKDGRE 428

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
           LF  M   F +  + EHY  MV L    G L EA++  + +P+ VD+ +LGALL  C   
Sbjct: 429 LFWRMKDEFNIKARPEHYVYMVKLLGGVGELEEAYNLTQSLPKPVDKAILGALLSCCDSY 488

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
            N+++++ V Q + +   +++   V+ S I+A    WDD  K+R  M   G  K  G SW
Sbjct: 489 GNSELAETVAQQIFKSNPADNVYRVMLSNIYAGDGRWDDVKKLRDKM-VGGQKKMRGVSW 547

Query: 555 I 555
           I
Sbjct: 548 I 548


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 282/522 (54%), Gaps = 18/522 (3%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
           F+Q  N L+   ++  +   A  +F  +      ++N MI G          +L ++  M
Sbjct: 159 FVQ--NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKN-GCVKEALMVFDWM 215

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
              G++PD  T   V   C+ L  L  G  VH+ V    L ED  V +SL+ MYA+CG +
Sbjct: 216 IGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNM 275

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           D A+ +F E+ +RD+VSW +M++GY   G A+ A+ L   M+ E   P+ +TL SVL +C
Sbjct: 276 DEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSAC 335

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             L  L  G+ + G+ ++ K++    + +ALIDMY KC  +  + RVF     +    WN
Sbjct: 336 ASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWN 395

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           A+I+    NGLS +AI LF +M    V+P+  TL  +L A A +  L   + +  Y  + 
Sbjct: 396 AIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS 455

Query: 351 GLRH---------DIF--CGSIDDALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALL 397
           G            DI+  CGS++ A  +F  +P  ++  ++W+A+I+    +G    A+ 
Sbjct: 456 GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAIS 515

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF++M + G   +PN++TF  +L AC HAGLVDEG  LF  M     +  +++HY+C++D
Sbjct: 516 LFDQMVQSG--VKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVID 573

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  RAG L EA++ +  M  + +  V GALLG+C   +N ++ +   + L E+E  N+GN
Sbjct: 574 LLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGN 633

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           YV+ + I++ +  W D+  +R +M   G+ KTP  S I + +
Sbjct: 634 YVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 255/477 (53%), Gaps = 26/477 (5%)

Query: 29  SLLKKCPSTKTV---QQIHTQML-INFIQKP--NFLLIRIIDLKDF----NYASLLFHQI 78
           SLL++C S K++   +QIH   + +  +  P  + LL  +           +A  LF ++
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDEL 82

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNH 137
             P+ +++N MIR  T +   Y  +L L+ QM   G + PDN+TYPFV  +C + L    
Sbjct: 83  RNPSLFSWNAMIRMYTNSGLSYD-ALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+     G D D  V +SL+ MY  CG+++ AR+VFD +RER LVSWN+MI+GY K
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  KEA+ +F  M  +   PD  T+VSVL  C  L +L +G+ V   V    +  +  +
Sbjct: 202 NGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISV 261

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++L+DMY KCG +  A+ +F  M  +DVV+W  M+  Y  NG +  A++L   M++  V
Sbjct: 262 WNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESV 321

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P+ +TL  VLSACAS+ +L  G+ +  +A ++ L  ++            C +++ + +
Sbjct: 322 KPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFR 381

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF          WNA+IS    NG + +A+ LF++M  E  A  PND T   +L A    
Sbjct: 382 VFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLME--AVDPNDATLNSLLPAYAFL 439

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
             + + R +   +  S G + + E  + ++D+Y++ G L  A +    +P+K  +I+
Sbjct: 440 TDLQQARNMHGYLIRS-GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDII 495


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 282/522 (54%), Gaps = 18/522 (3%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQM 110
           F+Q  N L+   ++  +   A  +F  +      ++N MI G          +L ++  M
Sbjct: 159 FVQ--NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKN-GCVKEALMVFDWM 215

Query: 111 KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170
              G++PD  T   V   C+ L  L  G  VH+ V    L ED  V +SL+ MYA+CG +
Sbjct: 216 IGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNM 275

Query: 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSC 230
           D A+ +F E+ +RD+VSW +M++GY   G A+ A+ L   M+ E   P+ +TL SVL +C
Sbjct: 276 DEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSAC 335

Query: 231 GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
             L  L  G+ + G+ ++ K++    + +ALIDMY KC  +  + RVF     +    WN
Sbjct: 336 ASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWN 395

Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
           A+I+    NGLS +AI LF +M    V+P+  TL  +L A A +  L   + +  Y  + 
Sbjct: 396 AIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS 455

Query: 351 GLRH---------DIF--CGSIDDALKVFEDMPVTNE--VSWNAMISALAFNGRAHEALL 397
           G            DI+  CGS++ A  +F  +P  ++  ++W+A+I+    +G    A+ 
Sbjct: 456 GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAIS 515

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF++M + G   +PN++TF  +L AC HAGLVDEG  LF  M     +  +++HY+C++D
Sbjct: 516 LFDQMVQSG--VKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVID 573

Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
           L  RAG L EA++ +  M  + +  V GALLG+C   +N ++ +   + L E+E  N+GN
Sbjct: 574 LLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGN 633

Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           YV+ + I++ +  W D+  +R +M   G+ KTP  S I + +
Sbjct: 634 YVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 255/477 (53%), Gaps = 26/477 (5%)

Query: 29  SLLKKCPSTKTV---QQIHTQML-INFIQKP--NFLLIRIIDLKDF----NYASLLFHQI 78
           SLL++C S K++   +QIH   + +  +  P  + LL  +           +A  LF ++
Sbjct: 23  SLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDEL 82

Query: 79  SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCANLLALNH 137
             P+ +++N MIR  T +   Y  +L L+ QM   G + PDN+TYPFV  +C + L    
Sbjct: 83  RNPSLFSWNAMIRMYTNSGLSYD-ALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
           G  +H+     G D D  V +SL+ MY  CG+++ AR+VFD +RER LVSWN+MI+GY K
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
            G  KEA+ +F  M  +   PD  T+VSVL  C  L +L +G+ V   V    +  +  +
Sbjct: 202 NGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISV 261

Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
            ++L+DMY KCG +  A+ +F  M  +DVV+W  M+  Y  NG +  A++L   M++  V
Sbjct: 262 WNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESV 321

Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
            P+ +TL  VLSACAS+ +L  G+ +  +A ++ L  ++            C +++ + +
Sbjct: 322 KPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFR 381

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF          WNA+IS    NG + +A+ LF++M  E  A  PND T   +L A    
Sbjct: 382 VFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLME--AVDPNDATLNSLLPAYAFL 439

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
             + + R +   +  S G + + E  + ++D+Y++ G L  A +    +P+K  +I+
Sbjct: 440 TDLQQARNMHGYLIRS-GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDII 495


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 279/549 (50%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +    Q+H+  +   +     L   ++DL     D   A   F      
Sbjct: 367 SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE 426

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +NVM+          S S +++ QM+  G+ P+ FTYP +  +C +L AL  G  +
Sbjct: 427 NIVLWNVMLVAYGQL-DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V K G   + +V   LI MYA+ G+L  A ++   + E D+VSW +MI+GY +    
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA++LF  M       D I   S + +C  +  L  G+ +           +  + +AL
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNAL 605

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I +Y +CG +  A   F+ + +K+ ++WN++++  AQ+G   EA+ +F RM       + 
Sbjct: 606 ISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNM 665

Query: 322 ITLIGVLSACASIGALDLGKWVDK------YASQRGLRHDIFC-----GSIDDALKVFED 370
            T    +SA AS+  +  G+ +        Y S+R + + +       GSI DA + F D
Sbjct: 666 FTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFND 725

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   N +SWNAMI+  + +G   EAL LFE M   G    PN VTF+GVLSAC H GLV 
Sbjct: 726 MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCG--IMPNHVTFVGVLSACSHIGLVK 783

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F+ M     L+PKSEHY C+VDL  RAG L  A ++++ MP   D ++   LL A
Sbjct: 784 EGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C   KN ++ +R    LLE+E  +S  YV+ S I+A  + W      R LM+++GV K P
Sbjct: 844 CVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEP 903

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 904 GRSWIEVKN 912



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 224/420 (53%), Gaps = 17/420 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F  ++  +  ++N +I GL    Q +S  +L+L+ +M+R  LKPD  T   +  +C
Sbjct: 315 AERIFSTMNSRDGVSYNSLISGLVQ--QGFSDRALELFTKMQRDCLKPDCITVASLLSAC 372

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A++ AL+ G+ +HS   K G+  D  +  SL+ +Y++C  +++A K F      ++V WN
Sbjct: 373 ASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWN 432

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
            M+  Y ++    ++ E+F +M+ E  +P++ T  S+L +C  LG L LG+ +   V+K 
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
              LN Y+ S LIDMY K G L  A R+   +   DVV+W AMI  Y Q+ + +EA+ LF
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLF 552

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+Y G+  D I     +SACA I AL  G+ +   +   G   D+            C
Sbjct: 553 EEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARC 612

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G I +A   FE +   N +SWN+++S LA +G   EAL +F RM +    A  N  T+  
Sbjct: 613 GRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT--EAEVNMFTYGS 670

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +SA      + +G+++  ++  + G   + E  + ++ LYA++G +S+AW     M E+
Sbjct: 671 AISAAASLANIKQGQQIHSMVLKT-GYDSEREVSNSLISLYAKSGSISDAWREFNDMSER 729



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 228/453 (50%), Gaps = 26/453 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC-ANL 132
           +F + S  + +++N MI  +  A +       L+ +M   G+ P+ +T+  V  +C    
Sbjct: 115 VFDENSNRSVFSWNKMIH-VFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           +A N+   VHS  F  G D    V++ LI +Y++ G ++SA+KVF+ I  +D+V+W +MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           SG S+ G  +EA+ LF  M   E  P    L SVL +   +    LG+ +   V+K    
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
              Y+ + L+ +Y +   L+ A R+F  M ++D V++N++I+   Q G S+ A+ LF +M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +   + PD IT+  +LSACAS+GAL  G  +  +A + G+  DI            C  +
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADV 413

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           + A K F      N V WN M+ A        ++  +F +M  EG    PN  T+  +L 
Sbjct: 414 ETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG--MIPNQFTYPSILR 471

Query: 422 ACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEK 478
            C   G +  G ++   ++ + F L      Y C  ++D+YA+ G L+ A   + R+PE 
Sbjct: 472 TCTSLGALYLGEQIHTHVIKTGFQL----NVYVCSVLIDMYAKYGQLALALRILRRLPE- 526

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
            D++V    + A   Q   D+    +QL  E+E
Sbjct: 527 -DDVVSWTAMIAGYVQH--DMFSEALQLFEEME 556



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 221/454 (48%), Gaps = 19/454 (4%)

Query: 40  VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
           V+Q+H++           +   +IDL   N     A  +F+ I   +   +  MI GL+ 
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
              +   ++ L+  M    + P  +    V  +   +     G  +H  V K G   + +
Sbjct: 239 NGLE-EEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V + L+ +Y+R  KL SA ++F  +  RD VS+NS+ISG  + G++  A+ELF +M+ + 
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
             PD IT+ S+L +C  +G L  G  +    +K  M  +  +  +L+D+Y KC  +  A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           + F     +++V WN M+ AY Q    +++  +F +M+  G+ P++ T   +L  C S+G
Sbjct: 418 KFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
           AL LG+ +  +  + G + +++            G +  AL++   +P  + VSW AMI+
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
               +    EAL LFE M   G   + +++ F   +SAC     + +G+++    S + G
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRG--IQFDNIGFASAISACAGIRALRQGQQI-HAQSYAAG 594

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
                   + ++ LYAR G + EA+   E++ +K
Sbjct: 595 FGADLSINNALISLYARCGRIQEAYLAFEKIGDK 628



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 185/400 (46%), Gaps = 19/400 (4%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157
           Q  S  ++L   M+  G++ +   Y ++   C    +L   + +H  + K G D +  + 
Sbjct: 37  QGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI 96

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
            SL+  Y R G    A KVFDE   R + SWN MI  +       +   LF RM  E   
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 218 PDEITLVSVLGSCGDLGDLVLG--KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           P+  T   VL +C   GD+     K V         D +  + + LID+Y K G +  A+
Sbjct: 157 PNGYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +VF+ +  KD+VTW AMI+  +QNGL  EAI+LF  M  + + P    L  VLSA   I 
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 336 ALDLGKWVDKYASQRGLRHDIF-CGS----------IDDALKVFEDMPVTNEVSWNAMIS 384
             +LG+ +     + G   + + C            +  A ++F  M   + VS+N++IS
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
            L   G +  AL LF +M ++    +P+ +T   +LSAC   G + +G +L      + G
Sbjct: 336 GLVQQGFSDRALELFTKMQRD--CLKPDCITVASLLSACASVGALHKGMQLHSHAIKA-G 392

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           +         ++DLY++   +  A  F   +  + + IVL
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFF--LTTETENIVL 430



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 139/323 (43%), Gaps = 27/323 (8%)

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           ++L   M E     +    + +L  C   G L     +   + K+  D    +  +L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y + G    A +VFD   N+ V +WN MI  +     + +   LF RM   G+ P+  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 325 IGVLSACASIGALDLGKWVDKYASQR------------GLRHDIFC--GSIDDALKVFED 370
            GVL AC  +G      +V +  S+              L  D++   G I+ A KVF  
Sbjct: 163 AGVLKAC--VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNC 220

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           + + + V+W AMIS L+ NG   EA+LLF  M        P       VLSA     L +
Sbjct: 221 ICMKDIVTWVAMISGLSQNGLEEEAILLFCDM--HASEIFPTPYVLSSVLSASTKIQLFE 278

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G +L  L+   +G    SE Y C  +V LY+R+  L  A      M  + D +   +L+
Sbjct: 279 LGEQLHCLV-IKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTMNSR-DGVSYNSLI 334

Query: 489 GACQKQKNTDVSQRVMQLLLEIE 511
               +Q  +D   R ++L  +++
Sbjct: 335 SGLVQQGFSD---RALELFTKMQ 354


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 260/459 (56%), Gaps = 29/459 (6%)

Query: 116 KPDNFTYPFVF--ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173
           + D+FTY F+   +S A +  +    +VHS V K+G  ED  V ++LI  Y++ G    A
Sbjct: 3   RRDSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDA 59

Query: 174 RKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDL 233
           RKVFDE+ ERD+VSWN+ ++   + G      +LF  M E+    D ++  ++L      
Sbjct: 60  RKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKA 115

Query: 234 GDLVLGKWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           G++        F +  +M + N    S ++  Y K G L  AR +FD M +K++VTW  M
Sbjct: 116 GEVEAA-----FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIM 170

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           ++A AQ GL +EA  LF +MK A V  D   ++ +L+ACA  G+L LGK + +Y  +R L
Sbjct: 171 VSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNL 230

Query: 353 RH---------DIFC--GSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFE 400
                      D+FC  G ++ A  VF+   V  + VSWN++I   A +G   +AL LF 
Sbjct: 231 GRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFA 290

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
           +M ++G    P+ VT I VLSAC H G VDEGRR F  M   +G++P+ EHY CM+DL  
Sbjct: 291 QMKQQG--FNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLG 348

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           R G + EA D ++ MP + +E++ G+LL AC+  KN + ++  +  L +++ SN+GNY +
Sbjct: 349 RGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAV 408

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            S I+A    W D AK R  M+  G  KT G SW+ +++
Sbjct: 409 LSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 447



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPF 124
           D   A ++F ++   N   + +M+       QK     + KL+ QMK   ++ D      
Sbjct: 148 DLEMARVIFDKMPSKNLVTWTIMVSACA---QKGLVDEAGKLFAQMKEASVELDVAAVVS 204

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-EIRER 183
           +  +CA   +L+ G  +H  V K  L    HV ++LI M+ +CG ++ A  VFD E  ++
Sbjct: 205 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 264

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D VSWNS+I G++  G+  +A+ELF +M+++ F PD +T+++VL +C  +          
Sbjct: 265 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHM---------- 314

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           GFV + +        S +   YG    ++P            +  +  MI    + GL  
Sbjct: 315 GFVDEGRRHF-----SNMERDYG----IMP-----------QIEHYGCMIDLLGRGGLIK 354

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSAC 331
           EA+ L   M +    P+++    +LSAC
Sbjct: 355 EAVDLIKSMPW---EPNEVIWGSLLSAC 379


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/569 (31%), Positives = 292/569 (51%), Gaps = 22/569 (3%)

Query: 5   AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
           AK     L     N  + L  + L L  +  +     ++   ++   +   N  L   + 
Sbjct: 56  AKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVR 115

Query: 65  LKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
             +   A  +F ++ + +  ++N MI G  + +  +  + + + +M++ G++P  FTY  
Sbjct: 116 FGELERARDVFDEMPKRDVVSWNTMISGYVS-FGLFDDAFRFFSEMQKAGIRPSGFTYST 174

Query: 125 V--FISCANLLALNHGVSVHSSVFKIGLDEDDHV-SHSLITMYARCGKLDSARKVFDEIR 181
           +  F+S A       G  +H+S+ + G+D  + V  +SLI MY + G +D A  VF  + 
Sbjct: 175 LLSFVSSAC-----RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITME 229

Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
           E D+ SWNS+I    K GY   A+  F  MR   + PD+ T+ +V+  C +L DL  G+ 
Sbjct: 230 ELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQ 289

Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
           +    ++     N  + SA ID++ KC  L  + RVF+ +   D V  NAMI++YA +G 
Sbjct: 290 IFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGF 349

Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
              A+ LF       + P + TL  VLSA + +  +D G  +     + GL  D+   S 
Sbjct: 350 GENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASS 409

Query: 361 ----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
                     ID A+K F  +   + +SWN MI  LA+NGR  +AL +F+ +    G   
Sbjct: 410 LVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLI--GGPP 467

Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
           P+++T  GVL AC   GLVDEG  +F  M   +G+IP  EHY+C+VD+ +R G L EA D
Sbjct: 468 PDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMD 527

Query: 471 FVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530
            VE MP +   ++ G+LL AC+   +   ++RV + ++E+E  +S  Y++ ++ +     
Sbjct: 528 IVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGR 587

Query: 531 WDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           W+   ++R  M+EKGV K  GCSWIGI +
Sbjct: 588 WESLVRVRRAMKEKGVRKVIGCSWIGIKN 616



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 186/383 (48%), Gaps = 49/383 (12%)

Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL--- 185
           C  L +L++   VH+ + K+G +    + +  + +Y++ G  + + +VF++I +++L   
Sbjct: 47  CFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISW 106

Query: 186 ----------------------------VSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
                                       VSWN+MISGY   G   +A   F  M++    
Sbjct: 107 NIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIR 166

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARR 276
           P   T  ++L     +     GK +   +++N +DL N  +G++LI MYGK G +  A  
Sbjct: 167 PSGFTYSTLLSF---VSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFG 223

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           VF  M   D+ +WN++I +  ++G  N A+  F  M+  G +PD+ T+  V++ C+++  
Sbjct: 224 VFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQD 283

Query: 337 LDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           L+ G+ +     + G            D+F  C  ++D+++VFE++   + V  NAMIS+
Sbjct: 284 LEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISS 343

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
            A++G    AL LF    +E    RP + T   VLSA      VD+G ++  L+  S GL
Sbjct: 344 YAWHGFGENALQLFVLTLREN--LRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKS-GL 400

Query: 446 IPKSEHYSCMVDLYARAGHLSEA 468
                  S +V++YA+ G +  A
Sbjct: 401 ESDVIVASSLVEMYAKFGLIDSA 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 49/289 (16%)

Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV--- 286
           C  L  L   K+V   ++K   + + ++G+  +D+Y + G    + RVF+ +++K++   
Sbjct: 47  CFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISW 106

Query: 287 ----------------------------VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
                                       V+WN MI+ Y   GL ++A   F+ M+ AG+ 
Sbjct: 107 NIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIR 166

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLR-HDIFCGS-----------IDDALK 366
           P   T   +LS  +S      GK +     + G+   ++  G+           +D A  
Sbjct: 167 PSGFTYSTLLSFVSSACR---GKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFG 223

Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
           VF  M   +  SWN++I +   +G  + AL  F  M   G +  P+  T   V++ C + 
Sbjct: 224 VFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYS--PDQFTVSTVITVCSNL 281

Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
             +++G ++F L     G +  S   S  +DL+++   L ++    E +
Sbjct: 282 QDLEKGEQIFAL-CIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEI 329


>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
 gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
          Length = 673

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/557 (31%), Positives = 289/557 (51%), Gaps = 31/557 (5%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SL+++C +  +++    IH  +L +      FLL  ++++         A+ +F  ++R 
Sbjct: 15  SLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDSLRDATAVFELVARE 74

Query: 82  N-EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
              + +N++I       Q    S+ LY +M   G+KP+  T   V  +CANL  L  G  
Sbjct: 75  RIAFPWNILIAANAQRGQS-RESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTGRE 133

Query: 141 VHSS--------VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           +H S         ++  +  D  ++ +L+TMY RCG +  AR VF+ I  RDL +WN+M+
Sbjct: 134 IHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNAMV 193

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           + YS+ G   +AV +  RM  E   P E T V +L  C  +G L   + +   ++   ++
Sbjct: 194 AAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATGLE 253

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
               +G+ L+ MYG+CG+L  A   F  + +KD+V WNAMI AYAQ+G S ++I +++ M
Sbjct: 254 SRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHVM 313

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------I 361
              GV  DK+TLIGVL AC+S+      + V       G+  D+  G+           +
Sbjct: 314 DLEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAYARGGHL 373

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
            DA  VF +M   N  +W+AM++A A  G    +L ++  M  +G   RPN +T++ +L 
Sbjct: 374 VDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQG--LRPNYITYVSILF 431

Query: 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
           AC HAGL+D G   F  M   +G+    EH SC+VDL  R+G L EA   +  +P ++  
Sbjct: 432 ACNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPYRLGI 491

Query: 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541
                LLGAC+   + +   RV +   ++ES     YV  S ++A   MWD+ +++R LM
Sbjct: 492 SAWMCLLGACRTHGDVERGARVARRAFQVESGEVAPYVALSNMYAGHGMWDEVSRVRQLM 551

Query: 542 REKGVSKTPGCSWIGID 558
               + K+ G S++ ID
Sbjct: 552 ANT-LDKSTGKSFVEID 567



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 136/419 (32%), Positives = 219/419 (52%), Gaps = 49/419 (11%)

Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI- 180
           Y  +   CAN  +L  G S+H+ + + G   +  + +SL+ MY +C  L  A  VF+ + 
Sbjct: 13  YESLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDSLRDATAVFELVA 72

Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
           RER    WN +I+  ++ G ++E++ L+ RM  E   P+ ITLVSVLG+C +L DL  G+
Sbjct: 73  RERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTGR 132

Query: 241 WVEGFVV--------KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
            +    V        +  M ++  M +AL+ MYG+CG++  AR VF+ +  +D+  WNAM
Sbjct: 133 EIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNAM 192

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           + AY++NG   +A+++  RM   GV P + T +G+LS C ++GALD  + +  +    GL
Sbjct: 193 VAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATGL 252

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
                           CGS+  A+  F+ +   + V+WNAMI+A A +G + +++ ++  
Sbjct: 253 ESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHV 312

Query: 402 MSKEGGAARPNDVTFIGVLSAC-----------VHAGLVDEGRRLFDLMSSSFGLIPKSE 450
           M  EG   R + VT IGVL AC           VHA +VD G  L  ++ ++        
Sbjct: 313 MDLEG--VRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTA-------- 362

Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS---QRVMQL 506
               +V+ YAR GHL +A D V    E+ +     A++ A  +  + D S    R MQL
Sbjct: 363 ----LVNAYARGGHLVDA-DLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQL 416


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 284/489 (58%), Gaps = 21/489 (4%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC---ANLLALNHGVSV 141
           ++N ++ G+      YS ++  +  M+  G KPD  +   +  +    ANLLA   G+ V
Sbjct: 319 SWNTLLSGMVQN-DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLA---GMEV 374

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+   K G+D + H+ +SLI MY +C  +      F+ + E+DL+SW ++I+GY++    
Sbjct: 375 HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECH 434

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            +A+ L  +++ E+   D + + S+L +C  L    L K + G+V+K  +  +  + +A+
Sbjct: 435 LDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAI 493

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           +++YG+   +  AR VF+++ +KD+V+W +MIT    NGL+ EA+ LFN +    + PD 
Sbjct: 494 VNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDL 553

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGL---------RHDIF--CGSIDDALKVFED 370
           ITL+ VL A A++ +L  GK +  +  ++G            D++  CG++++A  +F  
Sbjct: 554 ITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNY 613

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           +   + + W +MI+A   +G   +A+ LF +M+ E     P+ +TF+ +L AC H+GLV 
Sbjct: 614 VKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDEN--VLPDHITFLALLYACSHSGLVV 671

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG++ F++M + + L P  EHY+C+VDL AR+  L EA+ FV  MP +    V  ALLGA
Sbjct: 672 EGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGA 731

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C+   N D+ +   + LL++ + NSGNYV+ S  FA    W+D  ++R++M+   + K P
Sbjct: 732 CRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKP 791

Query: 551 GCSWIGIDD 559
           GCSWI +++
Sbjct: 792 GCSWIEVEN 800



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 212/432 (49%), Gaps = 30/432 (6%)

Query: 23  LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK---------DFNYASL 73
           L++     L+ C S K + Q   Q+  +F++  N+L    +D K          F  A  
Sbjct: 45  LQQAYSQALELCASHKALPQ-GQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
           +F ++S    + +N MI    +A  +Y  +++LY +M+ LG+  D FT+P V  +C    
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSA-GRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFK 162

Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDE--IRERDLVSWNSM 191
               G  +H    K G      V ++LI MYA+CG L  AR +FD   + + D VSWNS+
Sbjct: 163 ERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSI 222

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           IS +   G + EA+ LF RM+E     +  T VS L +C     + +G+ +   ++K+  
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNH 282

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             + Y+ +ALI MY  CG +  A RVF +M+ KD V+WN +++   QN + ++AI  F  
Sbjct: 283 FTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQD 342

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
           M+ +G  PD+++++ +++A      L  G  V  YA + G+  ++            C  
Sbjct: 343 MQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCC 402

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG-V 419
           +      FE MP  + +SW  +I+  A N    +AL L  ++  E     P     IG +
Sbjct: 403 VKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDP---MMIGSI 459

Query: 420 LSACVHAGLVDE 431
           L AC  +GL  E
Sbjct: 460 LLAC--SGLKSE 469



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 211/402 (52%), Gaps = 22/402 (5%)

Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
           +L L+ +M+ +G++ + +T+     +C     +  G  +H+ + K     D +VS++LI 
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIA 294

Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
           MYA CG+++ A +VF  +  +D VSWN+++SG  +     +A+  F  M++    PD+++
Sbjct: 295 MYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVS 354

Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
           +++++ + G   +L+ G  V  + +K+ +D N ++G++LIDMYGKC  +      F+ M 
Sbjct: 355 VLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMP 414

Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
            KD+++W  +I  YAQN    +A+ L  +++   ++ D + +  +L AC+ + +  L K 
Sbjct: 415 EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKE 474

Query: 343 VDKYASQRGLRHDIFCGSI----------DDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
           +  Y  + GL   +   +I          D A  VFE +   + VSW +MI+    NG A
Sbjct: 475 IHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLA 534

Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSF---GLIPK 448
            EAL LF  + +      P+ +T + VL A      + +G+ +   L+   F   GLI  
Sbjct: 535 IEALELFNSLIETN--IEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIAN 592

Query: 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           S     +VD+YAR G +  A +    + ++ D I+  +++ A
Sbjct: 593 S-----LVDMYARCGTMENARNIFNYVKQR-DLILWTSMINA 628



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 121/272 (44%), Gaps = 29/272 (10%)

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSALIDMYGKCGALVPAR 275
            P +      L  C     L  G+ +    +K +  L+  ++ +  + MYGKCG+   A 
Sbjct: 43  FPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAV 102

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +VFD M  + + TWNAMI A    G   EAI L+  M+  GV+ D  T   VL AC +  
Sbjct: 103 KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFK 162

Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED--MPVTNEVSWNAM 382
              LG  +   A + G    +F           CG +  A  +F+   M   + VSWN++
Sbjct: 163 ERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSI 222

Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
           ISA    G + EAL LF RM + G     N  TF+  L AC     +  GR +       
Sbjct: 223 ISAHVGEGESLEALSLFRRMQEVG--VESNTYTFVSALQACEGPTFIKIGRGI------- 273

Query: 443 FGLIPKSEHYS------CMVDLYARAGHLSEA 468
             +I KS H++       ++ +YA  G + +A
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANCGQMEDA 305


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 285/558 (51%), Gaps = 21/558 (3%)

Query: 20  PSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQK-PNFLLIRIID----LKDFNYA 71
           P L +  L S+++   S ++    +  H Q+L       P FL   +++    L   N A
Sbjct: 2   PFLSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSA 61

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            L+       +   +  +I G +     +  +L  +  M    ++P++FT+P V  +   
Sbjct: 62  KLILELAPCRSVVTWTALIAG-SVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTG 120

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L     G  +H+   K GL  D  V  S+  MY++ G L+ A KVFDE+  R+L +WN+ 
Sbjct: 121 LRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAY 180

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           IS     G  +++V  F  +      PD IT  + L +C D   L  G  + GF++++  
Sbjct: 181 ISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGY 240

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             N  + + LID YGKCG +  +  VFD M  ++ V+W+++I AY QN    +A  LF R
Sbjct: 241 GQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLR 300

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
            +   + P    +  VL ACA +  ++ G+ V   A +  +  +IF           CGS
Sbjct: 301 ARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGS 360

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           ID+A + F  MP  N VSWNA++   A  G A++A+ L E M+   G   P+ V+ I  L
Sbjct: 361 IDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIV-PSYVSLICAL 419

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC  AG +  G ++F+ M   +G+ P  EHY+C+VDL  RAG +  A+DF++RMP    
Sbjct: 420 SACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPT 479

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             + GALLGAC+     ++ +   + L E++  +SGN+V+ S +FA    W++   +R  
Sbjct: 480 ISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNE 539

Query: 541 MREKGVSKTPGCSWIGID 558
           M+E G+ K  G SWI +D
Sbjct: 540 MKEVGIKKGAGFSWITVD 557


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 259/457 (56%), Gaps = 29/457 (6%)

Query: 118 DNFTYPFVF--ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           D+FTY F+   +S A +  +    +VHS V K+G  ED  V ++LI  Y++ G    ARK
Sbjct: 128 DSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 184

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFDE+ ERD+VSWN+ ++   + G      +LF  M E+    D ++  ++L      G+
Sbjct: 185 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGE 240

Query: 236 LVLGKWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           +        F +  +M + N    S ++  Y K G L  AR +FD M +K++VTW  M++
Sbjct: 241 VEAA-----FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVS 295

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           A AQ GL +EA  LF +MK A V  D   ++ +L+ACA  G+L LGK + +Y  +R L  
Sbjct: 296 ACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR 355

Query: 355 ---------DIFC--GSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERM 402
                    D+FC  G ++ A  VF+   V  + VSWN++I   A +G   +AL LF +M
Sbjct: 356 STHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQM 415

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            ++G    P+ VT I VLSAC H G VDEGRR F  M   +G++P+ EHY CM+DL  R 
Sbjct: 416 KQQG--FNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRG 473

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G + EA D ++ MP + +E++ G+LL AC+  KN + ++  +  L +++ SN+GNY + S
Sbjct: 474 GLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLS 533

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            I+A    W D AK R  M+  G  KT G SW+ +++
Sbjct: 534 NIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 570



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 39/268 (14%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPF 124
           D   A ++F ++   N   + +M+       QK     + KL+ QMK   ++ D      
Sbjct: 271 DLEMARVIFDKMPSKNLVTWTIMVSACA---QKGLVDEAGKLFAQMKEASVELDVAAVVS 327

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-EIRER 183
           +  +CA   +L+ G  +H  V K  L    HV ++LI M+ +CG ++ A  VFD E  ++
Sbjct: 328 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 387

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D VSWNS+I G++  G+  +A+ELF +M+++ F PD +T+++VL +C  +          
Sbjct: 388 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHM---------- 437

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           GFV + +        S +   YG    ++P            +  +  MI    + GL  
Sbjct: 438 GFVDEGRRHF-----SNMERDYG----IMP-----------QIEHYGCMIDLLGRGGLIK 477

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSAC 331
           EA+ L   M +    P+++    +LSAC
Sbjct: 478 EAVDLIKSMPW---EPNEVIWGSLLSAC 502


>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
          Length = 396

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 220/353 (62%), Gaps = 13/353 (3%)

Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
           PBEITL +VL  C  LGDL +G  ++       +  N  + +A+++MY KCGA+   R V
Sbjct: 4   PBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 63

Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
           FD M  +DVV W+AMI  YAQNG SNEA+ LF  MK A + P+ +TL+ VLSACA +G++
Sbjct: 64  FDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSV 123

Query: 338 DLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386
           + G+ +  Y   RGL  +++           CG+I  A ++F+ +P  + V+WN+MI  L
Sbjct: 124 ETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGL 183

Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
           A NG A +A+ L+ RM +     +PN++TF+G+L+AC HAG V+ G   F  M S   + 
Sbjct: 184 AINGFAEDAIALYNRMKEI--EVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNIS 241

Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506
           P  EH++C+VDL+ R+G L +A++F+ RM  + + ++ G LL A +   N ++++   + 
Sbjct: 242 PNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKK 301

Query: 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           LLE+E  NSGNYVI S I+A+   W ++ K+R LM++K V K    SW+ ++D
Sbjct: 302 LLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSWVEVED 354



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/285 (36%), Positives = 162/285 (56%), Gaps = 17/285 (5%)

Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           +PB  T   V   CA L  L  G+ +        L  +  VS +++ MY +CG +D  R 
Sbjct: 3   EPBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 62

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD +  RD+V W++MI+GY++ G + EA+ELF  M+  +  P+++TLVSVL +C  LG 
Sbjct: 63  VFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGS 122

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
           +  G+ +  +V    +  N Y+ SAL+ MY KCG ++ AR++FD +  +D VTWN+MI  
Sbjct: 123 VETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG 182

Query: 296 YAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG---- 351
            A NG + +AI L+NRMK   V P+ IT +G+L+AC   G ++LG  ++ + S R     
Sbjct: 183 LAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELG--LEFFRSMRSDHNI 240

Query: 352 ---LRH-----DIFC--GSIDDALKVFEDMPVT-NEVSWNAMISA 385
              + H     D+FC  G + DA +    M V  N V W  ++SA
Sbjct: 241 SPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSA 285



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132
           L+F  ++R +   ++ MI G      + + +L+L+  MK   +KP++ T   V  +CA L
Sbjct: 62  LVFDHMARRDVVXWSAMIAGYAQN-GRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQL 120

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
            ++  G  + S V   GL  + +V+ +L+ MY++CG +  AR++FD++ +RD V+WNSMI
Sbjct: 121 GSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMI 180

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKNKM 251
            G +  G+A++A+ L+ RM+E E  P+ IT V +L +C   G + LG ++       + +
Sbjct: 181 MGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNI 240

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
             N    + ++D++ + G L+ A      M V  +VV W  +++A
Sbjct: 241 SPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSA 285


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 279/517 (53%), Gaps = 14/517 (2%)

Query: 53  QKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR 112
           Q  N L+       +  YA  LF+ + + +   +N +I G          +  L+  M  
Sbjct: 249 QVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFT-DEAAPLFNAMIS 307

Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
            G+KPD+ T+     S     +L H   VHS + +  +  D ++  +LI +Y + G ++ 
Sbjct: 308 AGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEM 367

Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
           ARK+F +    D+    +MISGY   G   +A+  F  + +E  + + +T+ SVL +C  
Sbjct: 368 ARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAA 427

Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
           +  L  GK +   ++K +++    +GSA+ DMY KCG L  A   F  M ++D V WN+M
Sbjct: 428 VAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSM 487

Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
           I++++QNG    AI LF +M  +G   D ++L   LSA A++ AL  GK +  Y  +   
Sbjct: 488 ISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAF 547

Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             D F           CG++  A  VF  M   NEVSWN++I+A   +G   E L L+  
Sbjct: 548 SSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHE 607

Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
           M + G    P+ VTF+ ++SAC HAGLVDEG   F  M+  +G+  + EHY+CMVDLY R
Sbjct: 608 MLRAG--IHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGR 665

Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
           AG + EA+D ++ MP   D  V G LLGAC+   N ++++   + LLE++  NSG YV+ 
Sbjct: 666 AGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLL 725

Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
           S + A+   W    K+R+LM+EKGV K PG SWI ++
Sbjct: 726 SNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVN 762



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/498 (28%), Positives = 234/498 (46%), Gaps = 27/498 (5%)

Query: 23  LREKLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
           L  +L SL + C     VQQ   +HTQ+++  +        R++ L      F  A  LF
Sbjct: 10  LTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLF 69

Query: 76  HQISRPNEYAFNVMIRGL-TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
            ++       +N MIRGL    W  +  +L  Y++M    + PD +T+P+V  +C  L  
Sbjct: 70  FELELRYALPWNWMIRGLYMLGW--FDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNN 127

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           +   + VH +   +G   D     +LI +YA  G +  AR+VFDE+  RD + WN M+ G
Sbjct: 128 VPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRG 187

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           Y K G    A+  F  MR    + + +T   +L  C   G+   G  + G V+ +  + +
Sbjct: 188 YVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFD 247

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             + + L+ MY KCG L+ AR++F+ M   D VTWN +I  Y QNG ++EA  LFN M  
Sbjct: 248 PQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS 307

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDD 363
           AGV PD +T    L +    G+L   K V  Y  +  +  D++            G ++ 
Sbjct: 308 AGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEM 367

Query: 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           A K+F+   + +     AMIS    +G   +A+  F  + +EG     N +T   VL AC
Sbjct: 368 ARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVT--NSLTMASVLPAC 425

Query: 424 VHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
                +  G+ L   ++      I      S + D+YA+ G L  A++F  RM ++ D +
Sbjct: 426 AAVAALKPGKELHCHILKKRLENIVNVG--SAITDMYAKCGRLDLAYEFFRRMSDR-DSV 482

Query: 483 VLGALLGACQKQKNTDVS 500
              +++ +  +    +++
Sbjct: 483 CWNSMISSFSQNGKPEIA 500


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 260/485 (53%), Gaps = 52/485 (10%)

Query: 122 YPFV--FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC--GKLDSARKVF 177
           YP +    SC  L  L     +H+     G+  D+ V+  +++  A    G +  AR +F
Sbjct: 36  YPILRHLSSCKTLKDLTQ---IHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLF 92

Query: 178 DEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSVLGSCGDLGDL 236
             IR+ D+   N++I  Y+      +AV  +  M E   + PD  T   +L +C ++  L
Sbjct: 93  YRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSL 152

Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYG------------------------------ 266
            LG+ +   V K        + + L+ MY                               
Sbjct: 153 RLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGY 212

Query: 267 -KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
            KCG    ARR+F+AM ++DVV+W+ MI  Y Q     E + LF  M    + P++  L+
Sbjct: 213 LKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLV 272

Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
             LSACA +GA++ G+W+++Y  ++ +R  +            CGS++ AL+VF  M   
Sbjct: 273 NALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEK 332

Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
           N ++W+AMI+ LA NG+  +AL LF +M  +G   +PN+VTFIG+L+AC H+ LVDEG  
Sbjct: 333 NVLAWSAMINGLAINGQGKDALNLFSQMEMQG--VKPNEVTFIGILNACSHSKLVDEGCS 390

Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ 494
            F  M+S +GL P + H+ CMVDLY RAG L +A   ++ MP K +  + GALL AC+  
Sbjct: 391 FFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIH 450

Query: 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSW 554
            +T++ ++V + LLE++ ++ G YV+ S I+A    WD  A++R +MRE+ VSKTPGCS+
Sbjct: 451 GDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSF 510

Query: 555 IGIDD 559
           I + D
Sbjct: 511 IDLGD 515



 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 225/472 (47%), Gaps = 61/472 (12%)

Query: 20  PSLL-REKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFN------YAS 72
           P LL +  +L  L  C + K + QIH Q +   I   NF+  RI+     +      YA 
Sbjct: 30  PQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYAR 89

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK-PDNFTYPFVFISCAN 131
            LF++I +P+ +  N +IR    +      ++  Y +M    +  PD  T+P +  +C+ 
Sbjct: 90  FLFYRIRKPDIFIANTLIRAYAFSPNPID-AVVFYSEMTESSVVFPDVHTFPLLLKACSE 148

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           + +L  G ++HS VFK+G   +  VS+ L+ MYA CG ++SA  VFD   E D  SWN M
Sbjct: 149 IPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIM 208

Query: 192 ISGYSKMGY-------------------------------AKEAVELFGRMREEEFLPDE 220
           I GY K G                                 KE + LF  M  E+  P+E
Sbjct: 209 IGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNE 268

Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
             LV+ L +C  LG +  G+W+E ++ +  + L   +G+ALIDMY KCG++  A  VF  
Sbjct: 269 SVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHK 328

Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
           M  K+V+ W+AMI   A NG   +A+ LF++M+  GV P+++T IG+L+AC+    +D G
Sbjct: 329 MKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEG 388

Query: 341 -KWVDKYASQRGLR---HDIFC--------GSIDDALKVFEDMPV-TNEVSWNAMISALA 387
             +     S  GL+   H   C        G +D A  V + MP   N   W A+++A  
Sbjct: 389 CSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNAC- 447

Query: 388 FNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRL 435
              R H    L E++ K      PN     V    + +AC     V E RR+
Sbjct: 448 ---RIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRM 496


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/484 (33%), Positives = 266/484 (54%), Gaps = 15/484 (3%)

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           + +  +I G T +  K+  ++  +++M+  G+ P+NFTY  +  +C+++LAL+ G  +HS
Sbjct: 283 FLWTAIISGFTQSL-KFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHS 341

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKL-DSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
            V   GL+ D  V +SL+ MY +C  + + A + F  I   +++SW S+I+G+S+ G  +
Sbjct: 342 RVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEE 401

Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
           E++++FG M+     P+  TL ++LG+CG +  L   + + G+++KN  D +  +G+AL+
Sbjct: 402 ESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALV 461

Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
           D Y   G +  A  V   M ++DV+T+ ++ T   Q G    A+ +   M    V  D  
Sbjct: 462 DAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGF 521

Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIF--CGSIDDALKVFEDM 371
           +L   LSA A I  ++ GK +  Y+ + GL           D++  CG I DA + F ++
Sbjct: 522 SLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEI 581

Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
              + VSWN +I  LA NG    AL  FE M   G    P+ +T + VL AC H GLVD 
Sbjct: 582 TEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAG--VEPDQITCLLVLYACSHGGLVDM 639

Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
           G   F  M    G+ P+ +HY C+VDL  RAG L EA + +E MP K D ++   LLGAC
Sbjct: 640 GLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGAC 699

Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
           +   N  + + + +  LE++ S+   YV+ + ++ +    +   K R +MRE+GV K PG
Sbjct: 700 KLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPG 759

Query: 552 CSWI 555
            SW+
Sbjct: 760 QSWM 763



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 216/433 (49%), Gaps = 32/433 (7%)

Query: 93  LTTAWQK---YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
           L +A+ K   +  +L+L+  M   G  P+ FT      SC+ L   NHG    + V K G
Sbjct: 87  LMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSG 146

Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
            D +  +  +LI  Y++CG    A +VF+ +   D+VSW  M+S + + G   +A++L+ 
Sbjct: 147 FDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYH 206

Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269
           RM +    P+E T V +L +   LG L  GK V   ++  +++LN  + +AL+DMY KC 
Sbjct: 207 RMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQ 265

Query: 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
           ++  A +V    +  DV  W A+I+ + Q+    EAI  F+ M+ +GV P+  T  G+L+
Sbjct: 266 SIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILN 325

Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIFCGS------------IDDALKVFEDMPVTNEV 377
           AC+SI ALDLGK +       GL +D+  G+            I+DA++ F  +   N +
Sbjct: 326 ACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVI 385

Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
           SW ++I+  + +G   E++ +F  M  +G   RPN  T   +L AC     + + R+L  
Sbjct: 386 SWTSLIAGFSEHGLEEESIKVFGAM--QGVGVRPNSFTLSTILGACGTIKSLTQTRKL-- 441

Query: 438 LMSSSFGLIPKSEH------YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
                 G I K+         + +VD YA  G + +AW     M  + D I   +L    
Sbjct: 442 -----HGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHR-DVITYTSLATRI 495

Query: 492 QKQKNTDVSQRVM 504
            +  N +++  ++
Sbjct: 496 NQTGNHEMALNII 508



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 238/481 (49%), Gaps = 57/481 (11%)

Query: 117 PDNFTYPFV--FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           P    Y  +   +S  N  ++  G+ +HS + K+G  ED  +S++L+++Y +C  +  AR
Sbjct: 11  PSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEAR 70

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           ++FDE+  RD+ SW  ++S Y K+G  +EA+ELF  M      P+E TL + L SC  L 
Sbjct: 71  QLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALR 130

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           +   G   +  V K+  D N  +GSALID Y KCG    A RVF+ M N D+V+W  M++
Sbjct: 131 EFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVS 190

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           ++ + G  ++A+ L++RM   GV P++ T + +L+A + +G L+ GK V  +     +  
Sbjct: 191 SFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIEL 249

Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
           ++            C SI+DA+KV +     +   W A+IS    + +  EA+  F  M 
Sbjct: 250 NLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEME 309

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
             G    PN+ T+ G+L+AC     +D G+++   +  + GL       + +VD+Y +  
Sbjct: 310 TSG--VVPNNFTYSGILNACSSILALDLGKQIHSRVVMA-GLENDVSVGNSLVDMYMKCS 366

Query: 464 HLSE---------------AWD-----FVERMPEKVDEIVLGAL---------------L 488
           ++ E               +W      F E   E+    V GA+               L
Sbjct: 367 NMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTIL 426

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMREKG 545
           GAC   K+   ++++   +++  + N    GN ++ +  +A L M DD+  + ++M+ + 
Sbjct: 427 GACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDA--YAGLGMVDDAWHVTSMMKHRD 484

Query: 546 V 546
           V
Sbjct: 485 V 485



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 188/375 (50%), Gaps = 27/375 (7%)

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F  I+ PN  ++  +I G +    +   S+K++  M+ +G++P++FT   +  +C  + +
Sbjct: 376 FRGIASPNVISWTSLIAGFSEHGLE-EESIKVFGAMQGVGVRPNSFTLSTILGACGTIKS 434

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L     +H  + K   D D  V ++L+  YA  G +D A  V   ++ RD++++ S+ + 
Sbjct: 435 LTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATR 494

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
            ++ G  + A+ +   M +++   D  +L S L +   +  +  GK +  + VK+ +   
Sbjct: 495 INQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSW 554

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
             + + L+D+YGKCG +  A R F  +   D V+WN +I   A NG  + A+  F  M+ 
Sbjct: 555 ISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRL 614

Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR---GLRHDI---FC--------GS 360
           AGV PD+IT + VL AC+  G +D+G  +D + S R   G+R  +    C        G 
Sbjct: 615 AGVEPDQITCLLVLYACSHGGLVDMG--LDYFQSMREKHGIRPQLDHYVCLVDLLGRAGR 672

Query: 361 IDDALKVFEDMPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
           +++A+ V E MP   + + +  ++ A   +G     + L E M+++G    P+D  F  +
Sbjct: 673 LEEAMNVIETMPFKPDALIYKTLLGACKLHGN----IPLGEHMARQGLELDPSDPAFYVL 728

Query: 420 LSACVHAGLVDEGRR 434
           L     A L D+  R
Sbjct: 729 L-----ANLYDDSGR 738


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 178/506 (35%), Positives = 267/506 (52%), Gaps = 21/506 (4%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
            A  +F  +   +  ++N +I GL    +    + + + +M+R G  P NFT      SCA
Sbjct: 914  ACSVFELMVEKDSVSWNSLISGLDQN-ECSEDAAESFLRMRRTGSMPSNFTLISTLSSCA 972

Query: 131  NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            +L  +  G  +H    K+GLD D  VS++L+ +YA  G      KVF  + E D VSWNS
Sbjct: 973  SLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNS 1032

Query: 191  MISGYS-KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
            +I   S       +AV+ F  M    +    +T +++L +   L    +   +   V+K 
Sbjct: 1033 VIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKY 1092

Query: 250  KMDLNFYMGSALIDMYGKCGALVPARRVFDAMV-NKDVVTWNAMITAYAQNGLSNEAIML 308
             +  +  +G+AL+  YGKCG +    ++F  M   +D V+WN+MI+ Y  N L ++A+ L
Sbjct: 1093 CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDL 1152

Query: 309  FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
               M   G   D  T   VLSACAS+  L+ G  V     +  +  D+            
Sbjct: 1153 VWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSK 1212

Query: 358  CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VT 415
            CG ID A + FE MP+ N  SWN+MIS  A +G   +AL LF RM  +G   +P D    
Sbjct: 1213 CGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDG---QPPDHVAP 1269

Query: 416  FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
             +GVLSAC H G V+EG   F  MS  + L P+ EH+SCMVDL  RAG L E  DF+  M
Sbjct: 1270 LLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSM 1329

Query: 476  PEKVDEIVLGALLGACQKQ--KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
            P K + ++   +LGAC +   +NT++ +R  ++LLE+E  N+ NYV+ + ++A+ + W+D
Sbjct: 1330 PMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWED 1389

Query: 534  SAKMRALMREKGVSKTPGCSWIGIDD 559
             AK R  M+E  V K  GCSW+ + D
Sbjct: 1390 VAKARXAMKEAAVKKEAGCSWVTMKD 1415



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 214/425 (50%), Gaps = 25/425 (5%)

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GLKPDNFTYPFVFISC 129
            A  +F Q+   N  + N ++ GL    Q  + + K++++MK L G+  D++       S 
Sbjct: 809  AKNIFEQMGVRNVVSMNGLMVGLVKQKQGEA-AAKVFHEMKDLVGINSDSYVVLLSAFSE 867

Query: 130  ANLL--ALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
             ++L      G  VH+ V + GL+++   + + L+ MYA+ G +  A  VF+ + E+D V
Sbjct: 868  FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 927

Query: 187  SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
            SWNS+ISG  +   +++A E F RMR    +P   TL+S L SC  LG ++LG+ +    
Sbjct: 928  SWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDG 987

Query: 247  VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS-NEA 305
            +K  +D +  + +AL+ +Y + G      +VF  M   D V+WN++I A + +  S ++A
Sbjct: 988  LKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQA 1047

Query: 306  IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
            +  F  M   G    ++T I +LSA +S+   ++   +     +  L  D          
Sbjct: 1048 VKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 1107

Query: 358  ---CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
               CG +++  K+F  M  T +EVSWN+MIS    N   H+A+ L   M ++G   R + 
Sbjct: 1108 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKG--QRLDS 1165

Query: 414  VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAWDF 471
             TF  VLSAC     ++ G    ++ +       +S+    S +VD+Y++ G +  A  F
Sbjct: 1166 FTFATVLSACASVATLERG---MEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRF 1222

Query: 472  VERMP 476
             E MP
Sbjct: 1223 FELMP 1227



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 215/467 (46%), Gaps = 43/467 (9%)

Query: 27   LLSLLKKCPSTKTV---QQIHTQMLI----NFIQKPNFLLIRIIDLKDFNYASLLFHQIS 79
            L+S L  C S   +   +QIH   L       +   N LL    +   F     +F  + 
Sbjct: 964  LISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP 1023

Query: 80   RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
              ++ ++N +I  L+ +    S ++K + +M R G      T+  +  + ++L       
Sbjct: 1024 EYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSH 1083

Query: 140  SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKM 198
             +H+ V K  L +D  + ++L++ Y +CG+++   K+F  + E RD VSWNSMISGY   
Sbjct: 1084 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHN 1143

Query: 199  GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
                +A++L   M ++    D  T  +VL +C  +  L  G  V    ++  M+ +  +G
Sbjct: 1144 ELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVG 1203

Query: 259  SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
            SAL+DMY KCG +  A R F+ M  ++V +WN+MI+ YA++G   +A+ LF RM   G  
Sbjct: 1204 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 1263

Query: 319  PDKIT-LIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377
            PD +  L+GVLSAC+ +G +           + G  H           +V+   P     
Sbjct: 1264 PDHVAPLLGVLSACSHVGFV-----------EEGFEH------FKSMSEVYRLSPRVEHF 1306

Query: 378  SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG--LVDEGRRL 435
            S   M+  L   G+  E       M       +PN + +  VL AC  A     + GRR 
Sbjct: 1307 S--CMVDLLGRAGKLDEVGDFINSM-----PMKPNVLIWRTVLGACCRANGRNTELGRRA 1359

Query: 436  FDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEKVDE 481
             +++     L P++  +Y  + ++YA      E W+ V +    + E
Sbjct: 1360 AEML---LELEPQNAVNYVLLANMYASG----EKWEDVAKARXAMKE 1399



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 146/526 (27%), Positives = 238/526 (45%), Gaps = 44/526 (8%)

Query: 15   TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML-INFIQK---PNFLLIRIIDLKDFNY 70
            T L   S   E L++  +    ++  +++H Q +   F+      N L+   + + D   
Sbjct: 538  TTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGS 597

Query: 71   ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC- 129
            A  LF ++S  N   +  +I G T    K   +   +  M R G  P+++ +     +C 
Sbjct: 598  AQKLFDEMSNRNLVTWACLISGYTQN-GKPDEACARFRDMVRAGFIPNHYAFGSALRACQ 656

Query: 130  -ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS---ARKVFDEIRERDL 185
             +       GV +H  + K     D  V + LI+MY  C  LDS   AR VFD I  R+ 
Sbjct: 657  ESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSC--LDSANDARSVFDRIGIRNS 714

Query: 186  VSWNSMISGYSKMGYAKEAVELFGRMREE----EFLPDEIT---LVSVLGSCGDLGDLVL 238
            +SWNS+IS YS+ G    A +LF  M++E     F P+E T   L++   S  D G  VL
Sbjct: 715  ISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVL 774

Query: 239  GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ 298
             + +   V K+    + Y+GSAL+  + + G    A+ +F+ M  ++VV+ N ++    +
Sbjct: 775  EQML-ARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVK 833

Query: 299  NGLSNEAIMLFNRMK-YAGVNPDKITLIGVLSACASIGALD----LGKWVDKYASQRGLR 353
                  A  +F+ MK   G+N D   ++  LSA +    L+     G+ V  +  + GL 
Sbjct: 834  QKQGEAAAKVFHEMKDLVGINSDSYVVL--LSAFSEFSVLEEGRRKGREVHAHVIRTGLN 891

Query: 354  HDIFC------------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
             +               G+I DA  VFE M   + VSWN++IS L  N  + +A   F R
Sbjct: 892  DNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLR 951

Query: 402  MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
            M + G  + P++ T I  LS+C   G +  G ++        GL       + ++ LYA 
Sbjct: 952  MRRTG--SMPSNFTLISTLSSCASLGWIMLGEQI-HCDGLKLGLDTDVSVSNALLALYAE 1008

Query: 462  AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
             G  +E       MPE  D++   +++GA    + + VSQ V   L
Sbjct: 1009 TGCFTECLKVFSLMPE-YDQVSWNSVIGALSDSEAS-VSQAVKYFL 1052



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 150/327 (45%), Gaps = 29/327 (8%)

Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
           N ++ + LI++Y + G L  A+++FD M N+++VTW  +I+ Y QNG  +EA   F  M 
Sbjct: 578 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 314 YAGVNPDKITLIGVLSACASIG--ALDLGKWVDKYASQRGLRHDIF-CG----------- 359
            AG  P+       L AC   G     LG  +    S+     D+  C            
Sbjct: 638 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 697

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG--GAARPNDVTFI 417
           S +DA  VF+ + + N +SWN++IS  +  G    A  LF  M KEG   + +PN+ TF 
Sbjct: 698 SANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFG 757

Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSF---GLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
            +++A   +  VD G  + + M +     G +      S +V  +AR G   +A +  E+
Sbjct: 758 SLITAACSS--VDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQ 815

Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
           M  + + + +  L+    KQK  + + +V   + ++   NS +YV+    F+   + ++ 
Sbjct: 816 MGVR-NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEG 874

Query: 535 AKMRALMREKGVSKTPGCSWIGIDDPK 561
                  R KG          G++D K
Sbjct: 875 -------RRKGREVHAHVIRTGLNDNK 894


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 259/457 (56%), Gaps = 29/457 (6%)

Query: 118 DNFTYPFVF--ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175
           D+FTY F+   +S A +  +    +VHS V K+G  ED  V ++LI  Y++ G    ARK
Sbjct: 435 DSFTYSFLIKALSAAGVAPVR---AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 491

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFDE+ ERD+VSWN+ ++   + G      +LF  M E+    D ++  ++L      G+
Sbjct: 492 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGE 547

Query: 236 LVLGKWVEGFVVKNKM-DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           +        F +  +M + N    S ++  Y K G L  AR +FD M +K++VTW  M++
Sbjct: 548 VEAA-----FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVS 602

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
           A AQ GL +EA  LF +MK A V  D   ++ +L+ACA  G+L LGK + +Y  +R L  
Sbjct: 603 ACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR 662

Query: 355 ---------DIFC--GSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERM 402
                    D+FC  G ++ A  VF+   V  + VSWN++I   A +G   +AL LF +M
Sbjct: 663 STHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQM 722

Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
            ++G    P+ VT I VLSAC H G VDEGRR F  M   +G++P+ EHY CM+DL  R 
Sbjct: 723 KQQG--FNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRG 780

Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
           G + EA D ++ MP + +E++ G+LL AC+  KN + ++  +  L +++ SN+GNY + S
Sbjct: 781 GLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLS 840

Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
            I+A    W D AK R  M+  G  KT G SW+ +++
Sbjct: 841 NIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNE 877



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 39/268 (14%)

Query: 67  DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPF 124
           D   A ++F ++   N   + +M+   +   QK     + KL+ QMK   ++ D      
Sbjct: 578 DLEMARVIFDKMPSKNLVTWTIMV---SACAQKGLVDEAGKLFAQMKEASVELDVAAVVS 634

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-EIRER 183
           +  +CA   +L+ G  +H  V K  L    HV ++LI M+ +CG ++ A  VFD E  ++
Sbjct: 635 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 694

Query: 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243
           D VSWNS+I G++  G+  +A+ELF +M+++ F PD +T+++VL +C  +          
Sbjct: 695 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHM---------- 744

Query: 244 GFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSN 303
           GFV + +        S +   YG               +   +  +  MI    + GL  
Sbjct: 745 GFVDEGRRHF-----SNMERDYG---------------IMPQIEHYGCMIDLLGRGGLIK 784

Query: 304 EAIMLFNRMKYAGVNPDKITLIGVLSAC 331
           EA+ L   M +    P+++    +LSAC
Sbjct: 785 EAVDLIKSMPW---EPNEVIWGSLLSAC 809


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 159/486 (32%), Positives = 274/486 (56%), Gaps = 15/486 (3%)

Query: 85  AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
           ++N ++ GL    + Y  +L  +  M+    KPD  +   +  +      L +G  VH+ 
Sbjct: 316 SWNTLLSGLVQN-ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAY 374

Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
             + GLD +  + ++LI MYA+C  +      F+ + E+DL+SW ++I+GY++     EA
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEA 434

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           + LF +++ +    D + + SVL +C  L      + + G+V K  +  +  + +A++++
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNV 493

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           YG+ G    ARR F+++ +KD+V+W +MIT    NGL  EA+ LF  +K   + PD I +
Sbjct: 494 YGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAI 553

Query: 325 IGVLSACASIGALDLGKWVDKYASQRGL---------RHDIF--CGSIDDALKVFEDMPV 373
           I  LSA A++ +L  GK +  +  ++G            D++  CG+++++ K+F  +  
Sbjct: 554 ISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQ 613

Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
            + + W +MI+A   +G  +EA+ LF++M+ E     P+ +TF+ +L AC H+GL+ EG+
Sbjct: 614 RDLILWTSMINANGMHGCGNEAIALFKKMTDEN--VIPDHITFLALLYACSHSGLMVEGK 671

Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
           R F++M   + L P  EHY+CMVDL +R+  L EA+ FV  MP K    V  ALLGAC  
Sbjct: 672 RFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHI 731

Query: 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553
             N ++ +   + LL+ ++ NSG Y + S IFA    W+D  ++R  M+  G+ K PGCS
Sbjct: 732 HSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCS 791

Query: 554 WIGIDD 559
           WI +D+
Sbjct: 792 WIEVDN 797



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 235/494 (47%), Gaps = 43/494 (8%)

Query: 12  LAFTELNDPSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDLKD- 67
           L+   L  PS L      LL  C + K +   QQ+H ++L + +    FL  +++ + + 
Sbjct: 34  LSTHPLATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEK 91

Query: 68  ---FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF 124
                 A  +F +++    + +N M+    ++  KY  +++LY +M+ LG+  D  T+P 
Sbjct: 92  CGSLKDAVKVFDEMTERTIFTWNAMMGAFVSS-GKYLEAIELYKEMRVLGVAIDACTFPS 150

Query: 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI--RE 182
           V  +C  L     G  +H    K G  E   V ++LI MY +CG L  AR +FD I   +
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEK 210

Query: 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242
            D VSWNS+IS +   G   EA+ LF RM+E     +  T V+ L    D   + LG  +
Sbjct: 211 EDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI 270

Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS 302
            G  +K+    + Y+ +ALI MY KCG +  A RVF +M+ +D V+WN +++   QN L 
Sbjct: 271 HGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELY 330

Query: 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-- 360
            +A+  F  M+ +   PD+++++ +++A    G L  GK V  YA + GL  ++  G+  
Sbjct: 331 RDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTL 390

Query: 361 IDDALK---------VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
           ID   K          FE M   + +SW  +I+  A N    EA+ LF ++  +G    P
Sbjct: 391 IDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDP 450

Query: 412 NDVTFIG-VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM-----VDLYARAGHL 465
                IG VL AC        G +  + +    G + K +    M     V++Y   GH 
Sbjct: 451 ---MMIGSVLRAC-------SGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHR 500

Query: 466 SEAWDFVERMPEKV 479
               D+  R  E +
Sbjct: 501 ----DYARRAFESI 510



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 214/426 (50%), Gaps = 18/426 (4%)

Query: 51  FIQKPNFLLIRIIDLKDFNYASLLFHQI--SRPNEYAFNVMIRGLTTAWQKYSHSLKLYY 108
           F+   N L+       D   A +LF  I   + +  ++N +I    T   K   +L L+ 
Sbjct: 179 FVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE-GKCLEALSLFR 237

Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
           +M+ +G+  + +T+        +   +  G+ +H +  K     D +V+++LI MYA+CG
Sbjct: 238 RMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCG 297

Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
           +++ A +VF  +  RD VSWN+++SG  +    ++A+  F  M+     PD++++++++ 
Sbjct: 298 RMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIA 357

Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
           + G  G+L+ GK V  + ++N +D N  +G+ LIDMY KC  +      F+ M  KD+++
Sbjct: 358 ASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLIS 417

Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
           W  +I  YAQN    EAI LF +++  G++ D + +  VL AC+ + + +  + +  Y  
Sbjct: 418 WTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVF 477

Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
           +R L  DI             G  D A + FE +   + VSW +MI+    NG   EAL 
Sbjct: 478 KRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
           LF  + +     +P+ +  I  LSA  +   + +G+ +   +    G   +    S +VD
Sbjct: 537 LFYSLKQTN--IQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEGPIASSLVD 593

Query: 458 LYARAG 463
           +YA  G
Sbjct: 594 MYACCG 599


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 168/561 (29%), Positives = 294/561 (52%), Gaps = 36/561 (6%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKP----NFLLIRII-----DLKDFNYASLLFHQISR 80
           LL++C  T++  +  TQ++   + K     NF ++  +        +   A  +F  + R
Sbjct: 73  LLQQCLDTRSYSE--TQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLR 130

Query: 81  PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
            N  A+  ++ G     Q   H++ ++ +M   G  P  +T   V  +C++L +L  G  
Sbjct: 131 RNVVAWTTLMVGFVQNSQP-KHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
            H+ + K  +D D  V  +L ++Y++CG+L+ A K F  IRE++++SW S +S  +  G 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
             + + LF  M   +  P+E TL S L  C ++  L LG  V    +K   + N  + ++
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNS 309

Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ------NGLS-----NEAIMLF 309
           L+ +Y K G +V A R+F+ M +  +VTWNAMI  +AQ      + LS     +EA+ LF
Sbjct: 310 LLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLF 369

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
           +++  +G+ PD  TL  VLS C+ + A++ G+ +     + G   D+            C
Sbjct: 370 SKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKC 429

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           GSI+ A K F +M     ++W +MI+  + +G + +AL +FE MS  G   RPN VTF+G
Sbjct: 430 GSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAG--VRPNAVTFVG 487

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSAC HAG+V +    F++M   + + P  +HY CMVD++ R G L +A +F+++M  +
Sbjct: 488 VLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYE 547

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
             E +    +  C+   N ++     + LL ++  +   YV+   ++ + + ++D +++R
Sbjct: 548 PSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVR 607

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
            +M E+ V K    SWI I D
Sbjct: 608 KMMEEEKVGKLKDWSWISIKD 628


>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 259/455 (56%), Gaps = 23/455 (5%)

Query: 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC--GKLDSARK 175
           +++ Y ++   C     +    S+H+ +   G +E+  +   L+  YA+C    ++ ARK
Sbjct: 6   NSYDYTYLLQRCKGTKTIK---SIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARK 62

Query: 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235
           VFD + +RD+  WN++I GY+ +G   EA+ ++  MR      +  T   VL +CG + D
Sbjct: 63  VFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKD 122

Query: 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITA 295
              G+ + G VVK+ +DL+ ++G+AL+  Y KC  +  +RRVFD +  KD+VTWN+MI+ 
Sbjct: 123 GKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISG 182

Query: 296 YAQNGLSNEAIMLF-NRMKYAG---VNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351
           YA NG +++A++LF N ++  G     PD  TL+ +L ACA   A+  G W+  Y  + G
Sbjct: 183 YAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSG 242

Query: 352 LRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFE 400
           +  D             CG ++ A  VF+ +   N V WNA+I     +G A EAL +F 
Sbjct: 243 IELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFS 302

Query: 401 RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460
            +   G    P+ V F+ +LSA  HAG+V EG  LF+ M   +G+   SEHY+ +VD+  
Sbjct: 303 GLIDSG--LHPDGVIFLCLLSAFSHAGMVAEGMELFEKM-GDYGVEKSSEHYASVVDILG 359

Query: 461 RAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
           RAG L EA +FV+ MP +  + V GALLGAC+   N ++++ + + L  ++  N+G Y+I
Sbjct: 360 RAGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYII 419

Query: 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             K++ +   W+++A++R  ++EK + K  GCS I
Sbjct: 420 LVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAI 454



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 222/398 (55%), Gaps = 27/398 (6%)

Query: 30  LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNY------ASLLFHQISRPNE 83
           LL++C  TKT++ IH Q++I   ++  FL  +++      Y      A  +F  +   + 
Sbjct: 13  LLQRCKGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDV 72

Query: 84  YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
           + +N +I+G       +  +L +Y  M+  G+  + +T+PFV  +C  +     G ++H 
Sbjct: 73  FVWNTIIQGYAN-LGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHG 131

Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
            V K GLD D  V ++L+  YA+C ++ ++R+VFD I E+D+V+WNSMISGY+  G A +
Sbjct: 132 HVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADD 191

Query: 204 AVELFGRMREEE----FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS 259
           A+ LF  M + +    + PD  TLV++L +C     +  G W+  +V+K+ ++L+  +GS
Sbjct: 192 ALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGS 251

Query: 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
            LI MY  CG L  AR VFD + +K++V WNA+I  Y  +G ++EA+ +F+ +  +G++P
Sbjct: 252 GLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHP 311

Query: 320 DKITLIGVLSACASIG----ALDLGKWVDKYASQRGLRH-----DIF--CGSIDDALKVF 368
           D +  + +LSA +  G     ++L + +  Y  ++   H     DI    G + +A++  
Sbjct: 312 DGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVVDILGRAGFLHEAVEFV 371

Query: 369 EDMPVT-NEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           ++MPV   +  + A++ A     R H  + L E ++++
Sbjct: 372 KNMPVQPGKDVYGALLGAC----RIHNNIELAEEIAEK 405


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 247/456 (54%), Gaps = 14/456 (3%)

Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
           L P    Y     +CA    L+    +H  +     + D  + +SLI +Y +CG +  A 
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
           KVFD++R++D+VSW S+I+GY++     EA+ L   M +  F P+  T  S+L + G   
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
           D  +G  +    VK     + Y+GSAL+DMY +CG +  A  VFD + +K+ V+WNA+I+
Sbjct: 167 DSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
            +A+ G    A+M+F  M+  G      T   + S  A IGAL+ GKWV  +  +   + 
Sbjct: 227 GFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL 286

Query: 355 DIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
             F            GS+ DA KVFE +   + V+WN+M++A A  G   EA+  FE M 
Sbjct: 287 TAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMR 346

Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
           K G     N +TF+ +L+AC H GLV EG+  FD++   + L P+ EHY  +VDL  RAG
Sbjct: 347 KSG--IYLNQITFLCILTACSHGGLVKEGKHYFDMI-KEYNLEPEIEHYVTVVDLLGRAG 403

Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
            L+ A  F+ +MP +    V GALL AC+  KN  V Q     + +++  +SG  V+   
Sbjct: 404 LLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYN 463

Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           I+A+   WD +A++R +M+  GV K P CSW+ I +
Sbjct: 464 IYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGN 499



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 136/287 (47%), Gaps = 15/287 (5%)

Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
           E  P      + + +C    +L   + + G +  ++ + + ++ ++LI +Y KCG++V A
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEA 105

Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
            +VFD M  KD+V+W ++I  YAQN +  EAI L   M      P+  T   +L A  + 
Sbjct: 106 HKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
               +G  +   A +     D++           CG +D A  VF+ +   N VSWNA+I
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
           S  A  G    AL++F  M + G  A     T+  + S     G +++G+ +   M  S 
Sbjct: 226 SGFARKGDGETALMVFAEMQRNGFEA--THFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283

Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
             +      + M+D+YA++G + +A    ER+  K D +   ++L A
Sbjct: 284 QKLTAFVG-NTMLDMYAKSGSMIDARKVFERVLNK-DLVTWNSMLTA 328



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
           A+ +F ++   N  ++N +I G        + +L ++ +M+R G +  +FTY  +F   A
Sbjct: 206 ATAVFDKLDSKNGVSWNALISGFARKGDGET-ALMVFAEMQRNGFEATHFTYSSIFSGLA 264

Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
            + AL  G  VH+ + K        V ++++ MYA+ G +  ARKVF+ +  +DLV+WNS
Sbjct: 265 GIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNS 324

Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
           M++ +++ G  KEAV  F  MR+     ++IT + +L +C   G +  GK     + +  
Sbjct: 325 MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYN 384

Query: 251 MDLNFYMGSALIDMYGKCGALVPARR-VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
           ++        ++D+ G+ G L  A   +F   +      W A++ A   +   N  +  F
Sbjct: 385 LEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH--KNAKVGQF 442

Query: 310 NRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSID 362
                  ++PD     + + +  AS G  D    V K     G++ +  C  ++
Sbjct: 443 AADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVE 496


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 290/561 (51%), Gaps = 39/561 (6%)

Query: 22  LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQK---------PNFLLIRIIDLKDFNYAS 72
           L+ E L SL    P  + VQ++H Q+L   + +          ++ L+R +      +++
Sbjct: 102 LVEEHLASLPHGLPRLRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSA 161

Query: 73  LLFHQISRPNEYAFNVMIRGLTTAWQKYSHS-LKLYYQMKRLGLKPDNFTYPFVFISCAN 131
                 +       N ++R    A     H+ L ++  M     + D FTY F+  + A 
Sbjct: 162 AAAPPFAPSTALLANTLLRAY--ALNSLPHAALAVFVDMPLR--QRDTFTYSFLIKALAT 217

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
              +    + H+ VFK+G  ED  V ++LI  Y++   L  A+KVFDE+  RD+VSWN+ 
Sbjct: 218 A-GVTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTA 276

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           ++   + G    A  +F  M E+    D ++  ++L      G    G+  E F +  +M
Sbjct: 277 MAAMVRKGEVDAARSMFDEMPEK----DTVSWNTMLD-----GYAKAGEAEEAFELFQRM 327

Query: 252 D-LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
              N    S ++  Y K G +  AR +FD M  K++VTW  M++A AQ GL  EA  LF 
Sbjct: 328 PGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFT 387

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DIFC--G 359
            MK A +  D + ++ +L+ACA  G L LGK + ++  QR L           D+FC  G
Sbjct: 388 EMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCG 447

Query: 360 SIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
            ++ A  +F+   V  + VSWN +I   A +G   +AL LF +M ++G    P+ VT I 
Sbjct: 448 CVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQG--FHPDAVTLIN 505

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           VLSAC H GLV+EGRR F  M + +G+ P+ EHY CMVDL  R G + EA D ++ MP +
Sbjct: 506 VLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWE 565

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
            +E++ G+LL AC+  KN + ++     L  ++ SN+GNY + S I+A    W D AK R
Sbjct: 566 PNEVIWGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKAR 625

Query: 539 ALMREKGVSKTPGCSWIGIDD 559
             M+  G  KT G SWI +D+
Sbjct: 626 VQMKGTGSQKTAGSSWIELDE 646


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 260/472 (55%), Gaps = 14/472 (2%)

Query: 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159
           +  + +++ Q+  +G +P+++TY  +   C  + A+  G  +H+ V K+    +  V ++
Sbjct: 195 FVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNA 254

Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
           L+T+Y++CG ++ A  VF+ +R+R+++SW + I+G+ + G  K+A++ F  MRE    P+
Sbjct: 255 LLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPN 314

Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
           E T   VL SCG + D + G+     V+K  M    ++G+A+IDMY   G +  A + F 
Sbjct: 315 EFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFK 374

Query: 280 AMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
            M      V+WNA+I  Y  N    +A+  F RM    V  ++ T   +  AC+S  +L 
Sbjct: 375 QMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLA 434

Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
               +     +  +  ++            CGS+++A++VF  +   + VSWN++I A +
Sbjct: 435 TTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYS 494

Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
            NG   +A+ L  +M +EG   +P   TF+ VLSAC H+GLV EG+  F  M   + + P
Sbjct: 495 QNGDPWKAIFLLRKMIEEGN--KPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQP 552

Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
           +  H SCMVD+  RAG L  A DF++++  K    +   LL AC+   N  +++ V + +
Sbjct: 553 EETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKI 612

Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
           L++E +++  YV  S ++A +  W D+   R LM +K +SK PGCSWI +++
Sbjct: 613 LDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNN 664



 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 277/528 (52%), Gaps = 49/528 (9%)

Query: 43   IHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
            +H  ++I  + +  +   +++    +    + A  LF +I   N   + +++ G      
Sbjct: 825  LHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRW-IVLTGACARRG 883

Query: 99   KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158
             Y  +L  + +M++ GL+P+ F  P +  +C +L     G ++H+ + K   + D ++  
Sbjct: 884  FYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIIS 943

Query: 159  SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
            +LI MY++CG ++ A +VFD I ++DLV  N+M+SGY++ G+  EA++L  +M++    P
Sbjct: 944  ALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKP 1003

Query: 219  DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
            + ++  +++     +GD  +   V   +  N                             
Sbjct: 1004 NVVSWNTLIAGFSQVGDKSMVSEVFRLMTANG---------------------------- 1035

Query: 279  DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
               V  DVV+W ++I+ + QN  ++E    F  M   G  P  +T+  +L AC ++  L 
Sbjct: 1036 ---VEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLR 1092

Query: 339  LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
             GK +  YA   G+  D++           CG I +A  +F  MP  N V+WN++I   A
Sbjct: 1093 HGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYA 1152

Query: 388  FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
             +G  +EA+ LF +M  E    + + +TF  VL+AC HAG+V+ G  LF  M   + + P
Sbjct: 1153 NHGYCNEAIELFNQM--EESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEP 1210

Query: 448  KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
            + EHY+CMVDL  RAG LSEA+D ++ MP + D+ V GALLGAC+   N ++++   + L
Sbjct: 1211 RLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHL 1270

Query: 508  LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
             E+E  + G+ ++ S ++A+   W ++AKM+ +M+++   K PGCSWI
Sbjct: 1271 FELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 1318



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 180/345 (52%), Gaps = 23/345 (6%)

Query: 134  ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
            AL  G ++H+ +  IGL    + +  L++ Y  CG+L +ARK+FD+I   ++  W  +  
Sbjct: 818  ALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTG 877

Query: 194  GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
              ++ G+ +EA+  F  M++E   P++  L S+L +CG L D   G+ +   ++KN  + 
Sbjct: 878  ACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFES 937

Query: 254  NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
            + Y+ SALI MY KCG +  A RVFD +V+KD+V  NAM++ YAQ+G  +EA+ L  +M+
Sbjct: 938  DAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQ 997

Query: 314  YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
             AGV P+ ++   +++  + +G   +   V +  +  G+  D+                 
Sbjct: 998  QAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDV----------------- 1040

Query: 374  TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
               VSW ++IS    N   HE    F+ M  +G    P+ VT   +L AC +   +  G+
Sbjct: 1041 ---VSWTSVISGFVQNFHNHEGFDAFKEMLDQGFC--PSSVTISSLLPACTNVANLRHGK 1095

Query: 434  RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
             +    +   G+       S +VD+YA+ G++SEA      MPE+
Sbjct: 1096 EIHGY-AMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER 1139



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 14/294 (4%)

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H  V KIGL  D+ V  SLI MYA+CG++DSA +V+D++   D  + N +IS Y++ G+ 
Sbjct: 136 HCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFF 195

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            +A ++F ++      P+  T  ++L  CG +  +  GK +   VVK +      +G+AL
Sbjct: 196 VQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNAL 255

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           + +Y KCG +  A  VF+++  +++++W A I  + Q+G   +A+  F+ M+ +G+ P++
Sbjct: 256 LTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNE 315

Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFED 370
            T   VL++C  +     G+       ++G+   +F G+           +D+A K F+ 
Sbjct: 316 FTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQ 375

Query: 371 MP-VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423
           M    + VSWNA+I+    N +  +A+  F RM KE  A   N+ T+  +  AC
Sbjct: 376 MGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVAC--NEFTYSNIFKAC 427



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 14/285 (4%)

Query: 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARR 276
            P    + S L  CG  G + LG+    FVVK  +  + ++ ++LIDMY KCG +  A R
Sbjct: 110 FPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVR 169

Query: 277 VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336
           V+D M + D  T N +I+AYA+NG   +A  +F ++   G  P+  T   +L+ C +I A
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISA 229

Query: 337 LDLGKWVD------KYASQRGLRHDIF-----CGSIDDALKVFEDMPVTNEVSWNAMISA 385
           +  GK +       +Y S+  + + +      CG +++A  VFE +   N +SW A I+ 
Sbjct: 230 IQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASING 289

Query: 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445
              +G   +AL  F  M + G    PN+ TF  VL++C       +G R+F       G+
Sbjct: 290 FYQHGDFKKALKQFSMMRESG--IEPNEFTFSIVLASCGCVKDFIDG-RMFHTQVIKKGM 346

Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
                  + ++D+Y+  G + EA    ++M      +   AL+  
Sbjct: 347 ASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAG 391



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 14/317 (4%)

Query: 41  QQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRP-NEYAFNVMIRGLTT 95
           +  HTQ++   +    F+   IID    L + + A   F Q+ R  +  ++N +I G   
Sbjct: 335 RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVL 394

Query: 96  AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
             +K   +++ + +M +  +  + FTY  +F +C++  +L   V +HS + K  ++ + H
Sbjct: 395 N-EKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLH 453

Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
           V+ SLI  Y +CG L++A +VF +I + D+VSWNS+I  YS+ G   +A+ L  +M EE 
Sbjct: 454 VASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEG 513

Query: 216 FLPDEITLVSVLGSCGDLGDLVLGK-WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
             P   T ++VL +C   G +  G+ + +  V    +       S ++D+ G+ G L  A
Sbjct: 514 NKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENA 573

Query: 275 RRVFDAMVNKDVVT-WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333
                 +  K   + W  ++ A   N  SN  +  +   K   + P+  T+   LS   +
Sbjct: 574 LDFIKKLTMKPTASIWRPLLAACRYN--SNLQMAEYVAEKILDLEPNDATVYVTLSNMYA 631

Query: 334 IGALDLGKWVDKYASQR 350
               ++G+W D    +R
Sbjct: 632 ----EVGRWADAENQRR 644



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CG 359
            +++ G  P +  +   LS C   G ++LG+    +  + GL  D F           CG
Sbjct: 103 HVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCG 162

Query: 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419
            +D A++V++ M   +  + N +ISA A NG   +A  +F ++   G   RPN  T+  +
Sbjct: 163 EVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMG--TRPNHYTYSTM 220

Query: 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
           L+ C     + EG++L   +      + ++   + ++ LY++ G + EA    E + ++
Sbjct: 221 LAVCGTISAIQEGKQLHAHV-VKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQR 278


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 292/555 (52%), Gaps = 19/555 (3%)

Query: 25  EKLLSLLKKCPSTKTVQQIHTQMLIN--FIQKPNF---LLIRIIDLKDFNYASLLFHQIS 79
           ++L  LL  C     V QIH  ++    F    NF   ++     +     A  LF ++ 
Sbjct: 8   KRLKHLLLACKDEAPVTQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLP 67

Query: 80  RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
           +    A+N MI   +  +   +  L LY+QM   G KPD+ T+     + ++L  L  G 
Sbjct: 68  QRGVDAWNAMIVAYSRRYH-LTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGE 126

Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
            +       G   D  V  S++ +Y +CGK+D A+ VFD++ +RD+V W +MI+G  + G
Sbjct: 127 RIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNG 186

Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMG 258
              EAV++F RMR+E    D + ++ ++ +C +LG+L LG  V G  V+ +M + +  + 
Sbjct: 187 NVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQ 246

Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
           ++L+DMY K G L  A RVF+ M  K+ V+W A+I+ +AQNG +  A+ L   M+     
Sbjct: 247 TSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFK 306

Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQR-GLRH-------DIF--CGSIDDALKVF 368
           PD   L+  L AC+ +G L LGK +  Y  +R G          D++  CGS+  A  +F
Sbjct: 307 PDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIF 366

Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
           + +   + + WN MI++   +G   E L LF +M KE   + P+  TF  +LSA  H+G 
Sbjct: 367 DRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKM-KEANIS-PDHATFASLLSALSHSGQ 424

Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
           VD G+  F+ M +   + P  +HY+CMVDL++RAG + EA+  +E M  +    +  ALL
Sbjct: 425 VDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALL 484

Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
             C   +N    +   + +L++   + G Y + S  F+  +MWD  + +R +M+E G+ K
Sbjct: 485 SGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKK 544

Query: 549 TPGCSWIGIDDPKQS 563
            PG S + ++   ++
Sbjct: 545 VPGYSAVEVNGKHEA 559


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 284/558 (50%), Gaps = 21/558 (3%)

Query: 20  PSLLREKLLSLLKKCPSTKTV---QQIHTQMLINFIQK-PNFLLIRIID----LKDFNYA 71
           P L +  L S+++   S ++    +  H Q+L       P FL   +++    L   N A
Sbjct: 2   PFLSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSA 61

Query: 72  SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
            L+       +   +  +I G +     +  +L  +  M    ++P++FT+P V  +   
Sbjct: 62  KLILELAPCRSVVTWTALIAG-SVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTG 120

Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
           L     G  +H+   K GL  D  V  S+  MY++ G L+ A KVFDE+  R+L +WN+ 
Sbjct: 121 LRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAY 180

Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
           IS     G  +++V  F  +      PD IT    L +C D   L  G  + GF++++  
Sbjct: 181 ISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGY 240

Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
             N  + + LID YGKCG +  +  VFD M  ++ V+W+++I AY QN    +A  LF R
Sbjct: 241 GQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLR 300

Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
            +   + P    +  VL ACA +  ++ G+ V   A +  +  +IF           CGS
Sbjct: 301 ARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGS 360

Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
           ID+A + F  MP  N VSWNA++   A  G A++A+ L E M+   G   P+ V+ I  L
Sbjct: 361 IDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIV-PSYVSLICAL 419

Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
           SAC  AG +  G ++F+ M   +G+ P  EHY+C+VDL  RAG +  A+DF++RMP    
Sbjct: 420 SACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPT 479

Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
             + GALLGAC+     ++ +   + L E++  +SGN+V+ S +FA    W++   +R  
Sbjct: 480 ISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNE 539

Query: 541 MREKGVSKTPGCSWIGID 558
           M+E G+ K  G SWI +D
Sbjct: 540 MKEVGIKKGAGFSWITVD 557


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 184/572 (32%), Positives = 289/572 (50%), Gaps = 83/572 (14%)

Query: 64  DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP 123
           D     YA  LF ++   + + F+  +R    A       L LY +M+R G+  D FT+ 
Sbjct: 49  DPLHLRYALCLFDRMP-CSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFH 107

Query: 124 FVFISCANLLALNHGV---SVHSSVFKIGLDED-DHVSHSLITMYARCGKLDSARKVFDE 179
           F+F  CA   A  H +    +H++ F+  L      VS+ +I MY   G    AR+ FD+
Sbjct: 108 FLFKCCARGRA--HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDD 165

Query: 180 IR-------------------------------ERDLVSWNSMISGYSKMGYAKEAVELF 208
           I                                 R+++SW  +ISGYS+ G A EAV+ F
Sbjct: 166 IPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCF 225

Query: 209 GRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268
             M  +   PDE+T++ +L +C  L DLV G+ +   V +  M ++  +  ALIDMY KC
Sbjct: 226 NSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKC 285

Query: 269 G----------------------ALVP----------ARRVFDAMVNKDVVTWNAMITAY 296
           G                      A++           AR +FD M ++D+VT+N++IT Y
Sbjct: 286 GDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGY 345

Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
              G   EA++LF +M+   +  D  T++ +L+ACAS+GAL  G+ +     QR +  DI
Sbjct: 346 IHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDI 405

Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
           +           CG +++A  VF+ M V +  +W+AMI+ LAFNG    AL  F  M  +
Sbjct: 406 YLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVD 465

Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
           G   +PN VT+I +L+AC H+ L+DEGR  F+ M     + P  EHY CM+DL  R+G L
Sbjct: 466 G--FQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLL 523

Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
            EA D V  MP + + ++  ++L AC+  K+ ++++   + LL++E      YV    I+
Sbjct: 524 DEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIY 583

Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
            + + W+D++++R LM E+GV K  G S I +
Sbjct: 584 IDSRQWEDASQIRRLMEERGVKKAAGYSSITV 615


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 295/556 (53%), Gaps = 25/556 (4%)

Query: 22  LLREKLLSLLKKCPSTKTVQQ---IHTQMLINFIQKPNFLLIRIIDL----KDFNYASLL 74
           ++ E + SL+ +C  TK ++Q   +H   +    +    +   I++L    +    A  +
Sbjct: 1   MVPELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQV 60

Query: 75  FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
           F ++S  N  +++ MI G     +  S +L L+    +L + P+ + Y  V  +CA+L  
Sbjct: 61  FDEMSERNLVSWSAMISGYEQIGEPIS-ALGLF---SKLNIVPNEYVYASVISACASLKG 116

Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
           L  G  +H    K GLD    VS++LITMY +CGK   A   ++E  E + V++N++I+G
Sbjct: 117 LVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITG 176

Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
           + +     +  E+   M ++ F PD  T V +LG+C    DL  G+ +    +K K++  
Sbjct: 177 FVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNST 236

Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-K 313
            ++G+ +I MY K   L  A + F ++  KD+++WN  I++ +      +A+  F  M  
Sbjct: 237 AFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLN 296

Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
              V PD+ T    L+AC+ + ++  GK +  +  +  L  D+            CG I 
Sbjct: 297 ECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIA 356

Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
            A  +F  M   N VSWN MI+    +G   +A  LF +M   G   +P+ VTF+G+L+A
Sbjct: 357 KAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMG--VKPDSVTFVGLLTA 414

Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
             HAGLVDEG   F+ M  ++G+ P+ EH+SC++DL  RAG L+EA +++++ P   D +
Sbjct: 415 SNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTV 474

Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
           VLG+LL AC+   + D  +   + LL+++ + +  YV+ S ++A+ +MWD  A+   L++
Sbjct: 475 VLGSLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLK 534

Query: 543 EKGVSKTPGCSWIGID 558
             G+ K PG S I ++
Sbjct: 535 GSGLKKEPGHSLIEVN 550


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 278/549 (50%), Gaps = 21/549 (3%)

Query: 29  SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
           SLL  C S   +    Q+H+  +   +     L   ++DL     D   A   F      
Sbjct: 367 SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETE 426

Query: 82  NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
           N   +NVM+          S S +++ QM+  G+ P+ FTYP +  +C +L AL  G  +
Sbjct: 427 NIVLWNVMLVAYGQL-DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
           H+ V K G   + +V   LI MYA+ G+L  A ++   + E D+VSW +MI+GY +    
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
            EA++LF  M       D I   S + +C  +  L  G+ +           +  + +AL
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNAL 605

Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
           I +Y +CG +  A   F+ + +K+ ++WN++++  AQ+G   EA+ +F RM       + 
Sbjct: 606 ISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNM 665

Query: 322 ITLIGVLSACASIGALDLGKWVDK------YASQRGLRHDIFC-----GSIDDALKVFED 370
            T    +SA AS+  +  G+ +        Y S+R + + +       GSI DA + F D
Sbjct: 666 FTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFND 725

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           M   N +SWNAMI+  + +G   EAL LFE M   G    PN VTF+GVLSAC H GLV 
Sbjct: 726 MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCG--IMPNHVTFVGVLSACSHIGLVK 783

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
           EG   F+ M     L+PKSEHY C+VDL  RAG L  A ++++ MP   D ++   LL A
Sbjct: 784 EGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843

Query: 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
           C   KN ++ +R    LLE+E  +S  YV+ S I+A  + W      R LM++ GV K P
Sbjct: 844 CVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEP 903

Query: 551 GCSWIGIDD 559
           G SWI + +
Sbjct: 904 GRSWIEVKN 912



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 224/420 (53%), Gaps = 17/420 (4%)

Query: 71  ASLLFHQISRPNEYAFNVMIRGLTTAWQKYS-HSLKLYYQMKRLGLKPDNFTYPFVFISC 129
           A  +F  ++  +  ++N +I GL    Q +S  +L+L+ +M+R  LKPD  T   +  +C
Sbjct: 315 AERIFSTMNSRDGVSYNSLISGLVQ--QGFSDRALELFTKMQRDCLKPDCITVASLLSAC 372

Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
           A++ AL+ G+ +HS   K G+  D  +  SL+ +Y++C  +++A K F      ++V WN
Sbjct: 373 ASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWN 432

Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
            M+  Y ++    ++ E+F +M+ E  +P++ T  S+L +C  LG L LG+ +   V+K 
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
              LN Y+ S LIDMY K G L  A R+   +   DVV+W AMI  Y Q+ + +EA+ LF
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLF 552

Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------C 358
             M+Y G+  D I     +SACA I AL  G+ +   +   G   D+            C
Sbjct: 553 EEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARC 612

Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
           G I +A   FE +   N +SWN+++S LA +G   EAL +F RM +    A  N  T+  
Sbjct: 613 GRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT--EAEVNMFTYGS 670

Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
            +SA      + +G+++  ++  + G   + E  + ++ LYA++G +S+AW     M E+
Sbjct: 671 AISAAASLANIKQGQQIHSMVLKT-GYDSEREVSNSLISLYAKSGSISDAWREFNDMSER 729



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 228/453 (50%), Gaps = 26/453 (5%)

Query: 74  LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC-ANL 132
           +F + S  + +++N MI  +  A +       L+ +M   G+ P+ +T+  V  +C    
Sbjct: 115 VFDENSNRSVFSWNKMIH-VFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
           +A N+   VHS  F  G D    V++ LI +Y++ G ++SA+KVF+ I  +D+V+W +MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
           SG S+ G  +EA+ LF  M   E  P    L SVL +   +    LG+ +   V+K    
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH 293

Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
              Y+ + L+ +Y +   L+ A R+F  M ++D V++N++I+   Q G S+ A+ LF +M
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKM 353

Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSI 361
           +   + PD IT+  +LSACAS+GAL  G  +  +A + G+  DI            C  +
Sbjct: 354 QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADV 413

Query: 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
           + A K F      N V WN M+ A        ++  +F +M  EG    PN  T+  +L 
Sbjct: 414 ETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG--MIPNQFTYPSILR 471

Query: 422 ACVHAGLVDEGRRLF-DLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEK 478
            C   G +  G ++   ++ + F L      Y C  ++D+YA+ G L+ A   + R+PE 
Sbjct: 472 TCTSLGALYLGEQIHTHVIKTGFQL----NVYVCSVLIDMYAKYGQLALALRILRRLPE- 526

Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
            D++V    + A   Q   D+    +QL  E+E
Sbjct: 527 -DDVVSWTAMIAGYVQH--DMFSEALQLFEEME 556



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 185/400 (46%), Gaps = 19/400 (4%)

Query: 98  QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157
           Q  S  ++L   M+  G++ +   Y ++   C    +L   + +H  + K G D +  + 
Sbjct: 37  QGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI 96

Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
            SL+  Y R G    A KVFDE   R + SWN MI  +       +   LF RM  E   
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 218 PDEITLVSVLGSCGDLGDLVLG--KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
           P+  T   VL +C   GD+     K V         D +  + + LID+Y K G +  A+
Sbjct: 157 PNGYTFAGVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
           +VF+ +  KD+VTW AMI+  +QNGL  EAI+LF  M  + + P    L  VLSA   I 
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 336 ALDLGKWVDKYASQRGLRHDIF-CGS----------IDDALKVFEDMPVTNEVSWNAMIS 384
             +LG+ +     + G   + + C            +  A ++F  M   + VS+N++IS
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
            L   G +  AL LF +M ++    +P+ +T   +LSAC   G + +G +L      + G
Sbjct: 336 GLVQQGFSDRALELFTKMQRD--CLKPDCITVASLLSACASVGALHKGMQLHSHAIKA-G 392

Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
           +         ++DLY++   +  A  F   +  + + IVL
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFF--LXTETENIVL 430



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 139/323 (43%), Gaps = 27/323 (8%)

Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
           ++L   M E     +    + +L  C   G L     +   + K+  D    +  +L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
           Y + G    A +VFD   N+ V +WN MI  +     + +   LF RM   G+ P+  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 325 IGVLSACASIGALDLGKWVDKYASQR------------GLRHDIFC--GSIDDALKVFED 370
            GVL AC  +G      +V +  S+              L  D++   G I+ A KVF  
Sbjct: 163 AGVLKAC--VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNC 220

Query: 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430
           + + + V+W AMIS L+ NG   EA+LLF  M        P       VLSA     L +
Sbjct: 221 ICMKDIVTWVAMISGLSQNGLEEEAILLFCDM--HASEIFPTPYVLSSVLSASTKIQLFE 278

Query: 431 EGRRLFDLMSSSFGLIPKSEHYSC--MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
            G +L  L+   +G    SE Y C  +V LY+R+  L  A      M  + D +   +L+
Sbjct: 279 LGEQLHCLV-IKWGF--HSETYVCNGLVALYSRSRKLISAERIFSTMNSR-DGVSYNSLI 334

Query: 489 GACQKQKNTDVSQRVMQLLLEIE 511
               +Q  +D   R ++L  +++
Sbjct: 335 SGLVQQGFSD---RALELFTKMQ 354


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,734,516,353
Number of Sequences: 23463169
Number of extensions: 356106018
Number of successful extensions: 1014721
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7833
Number of HSP's successfully gapped in prelim test: 3667
Number of HSP's that attempted gapping in prelim test: 830614
Number of HSP's gapped (non-prelim): 51581
length of query: 566
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 418
effective length of database: 8,886,646,355
effective search space: 3714618176390
effective search space used: 3714618176390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)