BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042098
(566 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/548 (56%), Positives = 402/548 (73%), Gaps = 17/548 (3%)
Query: 23 LREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPN 82
L L LLKKC S ++QI QML++ ++KPNFL+ + ++L DFNY+S LF PN
Sbjct: 36 LERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPN 95
Query: 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
Y+FN MIRGLT W + +L LY +MK GLKPD FTY FVFI+CA L + G SVH
Sbjct: 96 HYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVH 155
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
SS+FK+GL+ D H++HSLI MYA+CG++ ARK+FDEI ERD VSWNSMISGYS+ GYAK
Sbjct: 156 SSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAK 215
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+A++LF +M EE F PDE TLVS+LG+C LGDL G+ +E + K+ L+ ++GS LI
Sbjct: 216 DAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLI 275
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MYGKCG L ARRVF+ M+ KD V W AMIT Y+QNG S+EA LF M+ GV+PD
Sbjct: 276 SMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 335
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL VLSAC S+GAL+LGK ++ +AS+ L+H+I+ CG +++AL+VFE M
Sbjct: 336 TLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAM 395
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
PV NE +WNAMI+A A G A EALLLF+RMS P+D+TFIGVLSACVHAGLV +
Sbjct: 396 PVKNEATWNAMITAYAHQGHAKEALLLFDRMS-----VPPSDITFIGVLSACVHAGLVHQ 450
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G R F MSS FGL+PK EHY+ ++DL +RAG L EAW+F+ER P K DEI+L A+LGAC
Sbjct: 451 GCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGAC 510
Query: 492 QKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
K+K+ + ++ M++L+E+ E+ N+GNYVISS + A++KMWD+SAKMRALMR++GV KTP
Sbjct: 511 HKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTP 570
Query: 551 GCSWIGID 558
GCSWI I+
Sbjct: 571 GCSWIEIE 578
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/600 (34%), Positives = 331/600 (55%), Gaps = 53/600 (8%)
Query: 10 RHLAFTELNDPSL--LREKLLSLLKKCPSTKTVQQIHTQMLIN------FIQKPNFLLIR 61
RH F+ N P+ R + +SL+++C S + ++Q H M+ + F +
Sbjct: 14 RHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAA 73
Query: 62 IIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
+ YA +F +I +PN +A+N +IR + + P+ +T
Sbjct: 74 LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 133
Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
+PF+ + A + +L+ G S+H K + D V++SLI Y CG LDSA KVF I+
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193
Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
E+D+VSWNSMI+G+ + G +A+ELF +M E+ +T+V VL +C + +L G+
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253
Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-------------------- 281
V ++ +N++++N + +A++DMY KCG++ A+R+FDAM
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 282 -----------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLS 329
KD+V WNA+I+AY QNG NEA+++F+ ++ + ++ITL+ LS
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373
Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
ACA +GAL+LG+W+ Y + G+R + CG ++ + +VF + +
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
W+AMI LA +G +EA+ +F +M + +PN VTF V AC H GLVDE LF
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQE--ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQ 491
Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTD 498
M S++G++P+ +HY+C+VD+ R+G+L +A F+E MP V GALLGAC+ N +
Sbjct: 492 MESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLN 551
Query: 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
+++ LLE+E N G +V+ S I+A L W++ +++R MR G+ K PGCS I ID
Sbjct: 552 LAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/588 (36%), Positives = 329/588 (55%), Gaps = 54/588 (9%)
Query: 22 LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNYASLLF 75
+L LLSLL+KC ++QI QM+IN + F R+I + + +Y+ +
Sbjct: 51 VLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL 110
Query: 76 HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL---KPDNFTYPFVFISCANL 132
I PN +++NV IRG + + + S LY QM R G +PD+FTYP +F CA+L
Sbjct: 111 KGIENPNIFSWNVTIRGFSES-ENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169
Query: 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192
+ G + V K+ L+ HV ++ I M+A CG +++ARKVFDE RDLVSWN +I
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229
Query: 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252
+GY K+G A++A+ ++ M E PD++T++ ++ SC LGDL GK +V +N +
Sbjct: 230 NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR 289
Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL----------- 301
+ + +AL+DM+ KCG + ARR+FD + + +V+W MI+ YA+ GL
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDM 349
Query: 302 --------------------SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
+A+ LF M+ + PD+IT+I LSAC+ +GALD+G
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409
Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
W+ +Y + L ++ CG+I +AL VF + N +++ A+I LA +G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHG 469
Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
A A+ F M G A P+++TFIG+LSAC H G++ GR F M S F L P+ +
Sbjct: 470 DASTAISYFNEMIDAGIA--PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLK 527
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
HYS MVDL RAG L EA +E MP + D V GALL C+ N ++ ++ + LLE+
Sbjct: 528 HYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLEL 587
Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
+ S+SG YV+ ++ MW+D+ + R +M E+GV K PGCS I ++
Sbjct: 588 DPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/611 (35%), Positives = 335/611 (54%), Gaps = 56/611 (9%)
Query: 1 MLLRAKAYSRHLAFTELNDP--SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL 58
+ + + +Y H + + P S+ LSLL C + ++++ IH QM+ + N+
Sbjct: 8 LTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYA 67
Query: 59 LIRIIDL-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMK 111
L ++I+ + YA +F I PN +N M RG + S +LKLY M
Sbjct: 68 LSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVS-ALKLYVCMI 126
Query: 112 RLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLD 171
LGL P+++T+PFV SCA A G +H V K+G D D +V SLI+MY + G+L+
Sbjct: 127 SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLE 186
Query: 172 SARKVFD-------------------------------EIRERDLVSWNSMISGYSKMGY 200
A KVFD EI +D+VSWN+MISGY++ G
Sbjct: 187 DAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGN 246
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
KEA+ELF M + PDE T+V+V+ +C G + LG+ V ++ + N + +A
Sbjct: 247 YKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNA 306
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
LID+Y KCG L A +F+ + KDV++WN +I Y L EA++LF M +G P+
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQR--------GLRHDIF-----CGSIDDALKV 367
+T++ +L ACA +GA+D+G+W+ Y +R LR + CG I+ A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
F + + SWNAMI A +GRA + LF RM K G +P+D+TF+G+LSAC H+G
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG--IQPDDITFVGLLSACSHSG 484
Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
++D GR +F M+ + + PK EHY CM+DL +G EA + + M + D ++ +L
Sbjct: 485 MLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSL 544
Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
L AC+ N ++ + + L++IE N G+YV+ S I+A+ W++ AK RAL+ +KG+
Sbjct: 545 LKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMK 604
Query: 548 KTPGCSWIGID 558
K PGCS I ID
Sbjct: 605 KVPGCSSIEID 615
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/546 (36%), Positives = 323/546 (59%), Gaps = 21/546 (3%)
Query: 29 SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEY 84
SL+ ++QIH ++L+ +Q FL+ ++I D +A +F + RP +
Sbjct: 26 SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
+N +IRG + + +L +Y M+ + PD+FT+P + +C+ L L G VH+
Sbjct: 86 PWNAIIRGYSRN-NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD--EIRERDLVSWNSMISGYSKMGYAK 202
VF++G D D V + LI +YA+C +L SAR VF+ + ER +VSW +++S Y++ G
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
EA+E+F +MR+ + PD + LVSVL + L DL G+ + VVK +++ + +L
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MY KCG + A+ +FD M + +++ WNAMI+ YA+NG + EAI +F+ M V PD I
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
++ +SACA +G+L+ + + +Y + R D+F CGS++ A VF+
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
+ V W+AMI +GRA EA+ L+ M E G PNDVTF+G+L AC H+G+V E
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAM--ERGGVHPNDVTFLGLLMACNHSGMVRE 442
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G F+ M+ + P+ +HY+C++DL RAGHL +A++ ++ MP + V GALL AC
Sbjct: 443 GWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC 501
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+K ++ ++ + Q L I+ SN+G+YV S ++A ++WD A++R M+EKG++K G
Sbjct: 502 KKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVG 561
Query: 552 CSWIGI 557
CSW+ +
Sbjct: 562 CSWVEV 567
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/549 (38%), Positives = 316/549 (57%), Gaps = 26/549 (4%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDF-NYASLLFHQI-SR 80
LL L+ +C S + +QI TQ++ + + + ++ +++ DF +Y+S++ H I S
Sbjct: 9 LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
+ +++N ++ K ++ Y G PD FT+P VF +C + G
Sbjct: 69 LSSFSYNTLLSSYAVC-DKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQ 127
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
+H V K+G +D +V +SL+ Y CG+ +A KVF E+ RD+VSW +I+G+++ G
Sbjct: 128 IHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGL 187
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
KEA++ F +M E P+ T V VL S G +G L LGK + G ++K ++ G+A
Sbjct: 188 YKEALDTFSKMDVE---PNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNA 244
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY-AGVNP 319
LIDMY KC L A RVF + KD V+WN+MI+ S EAI LF+ M+ +G+ P
Sbjct: 245 LIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKP 304
Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
D L VLSACAS+GA+D G+WV +Y G++ D CG I+ AL++F
Sbjct: 305 DGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIF 364
Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
+ N +WNA++ LA +G E+L FE M K G +PN VTF+ L+AC H GL
Sbjct: 365 NGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLG--FKPNLVTFLAALNACCHTGL 422
Query: 429 VDEGRRLFDLMSS-SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
VDEGRR F M S + L PK EHY CM+DL RAG L EA + V+ MP K D + GA+
Sbjct: 423 VDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAI 482
Query: 488 LGACQKQKN-TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546
L AC+ + ++ + ++ L+IE +SG YV+ S IFA + WDD A++R LM+ KG+
Sbjct: 483 LSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGI 542
Query: 547 SKTPGCSWI 555
SK PG S+I
Sbjct: 543 SKVPGSSYI 551
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 315/549 (57%), Gaps = 18/549 (3%)
Query: 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFL----LIRIIDLKDFNYASLLFHQISR 80
+++ +L+ + ++QIH ++ + + FL L R + + Y+ LLF
Sbjct: 14 QQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQF 73
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
PN + +N +I G + +L L+ +++ GL FT+P V +C + G+
Sbjct: 74 PNIFLYNSLINGFVNN-HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
+HS V K G + D SL+++Y+ G+L+ A K+FDEI +R +V+W ++ SGY+ G
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
+EA++LF +M E PD +V VL +C +GDL G+W+ ++ + +M N ++ +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
L+++Y KCG + AR VFD+MV KD+VTW+ MI YA N E I LF +M + PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFE 369
+ +++G LS+CAS+GALDLG+W + ++F CG++ +VF+
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
+M + V NA IS LA NG + +F + K G P+ TF+G+L CVHAGL+
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLG--ISPDGSTFLGLLCGCVHAGLI 430
Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
+G R F+ +S + L EHY CMVDL+ RAG L +A+ + MP + + IV GALL
Sbjct: 431 QDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490
Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
C+ K+T +++ V++ L+ +E N+GNYV S I++ WD++A++R +M +KG+ K
Sbjct: 491 GCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKI 550
Query: 550 PGCSWIGID 558
PG SWI ++
Sbjct: 551 PGYSWIELE 559
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/585 (34%), Positives = 314/585 (53%), Gaps = 52/585 (8%)
Query: 22 LLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
++ +L+ KC S + +Q+ +M I N ++ + L + A LF +
Sbjct: 56 FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
++ +N M+ G + +L + M + G + +++ V +C+ L +N GV V
Sbjct: 116 DQCTWNSMVSGFAQH-DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV 174
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
HS + K D ++ +L+ MY++CG ++ A++VFDE+ +R++VSWNS+I+ + + G A
Sbjct: 175 HSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPA 234
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSA 260
EA+++F M E PDE+TL SV+ +C L + +G+ V G VVKN K+ + + +A
Sbjct: 235 VEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNA 294
Query: 261 LIDMYGKCGALVPARRVFDAM-------------------------------VNKDVVTW 289
+DMY KC + AR +FD+M ++VV+W
Sbjct: 295 FVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSW 354
Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349
NA+I Y QNG + EA+ LF +K V P + +L ACA + L LG + +
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLK 414
Query: 350 RGLR------HDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392
G + DIF CG +++ VF M + VSWNAMI A NG
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYG 474
Query: 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452
+EAL LF M + G +P+ +T IGVLSAC HAG V+EGR F M+ FG+ P +HY
Sbjct: 475 NEALELFREMLESG--EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532
Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512
+CMVDL RAG L EA +E MP + D ++ G+LL AC+ +N + + V + LLE+E
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592
Query: 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
SNSG YV+ S ++A L W+D +R MR++GV+K PGCSWI I
Sbjct: 593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 200/417 (47%), Gaps = 81/417 (19%)
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
VH+SV K G + + + LI Y++CG L+ R+VFD++ +R++ +WNS+++G +K+G+
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 201 AKEAVELFGRMRE-------------------------------EEFLPDEITLVSVLGS 229
EA LF M E E F+ +E + SVL +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
C L D+ G V + K+ + Y+GSAL+DMY KCG + A+RVFD M +++VV+W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD-KYAS 348
N++IT + QNG + EA+ +F M + V PD++TL V+SACAS+ A+ +G+ V +
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPV------------------------ 373
LR+DI C I +A +F+ MP+
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341
Query: 374 -------TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
N VSWNA+I+ NG EAL LF + +E + P +F +L AC
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRE--SVCPTHYSFANILKACADL 399
Query: 427 GLVDEGRRL-FDLMSSSFGLIPKSEH----YSCMVDLYARAGHLSEAWDFVERMPEK 478
+ G + ++ F E + ++D+Y + G + E + +M E+
Sbjct: 400 AELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 44/279 (15%)
Query: 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD-------------------- 279
++V V+K+ ++ + LID Y KCG+L R+VFD
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 280 -----------AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
+M +D TWN+M++ +AQ+ EA+ F M G ++ + VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 329 SACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEV 377
SAC+ + ++ G V ++ D++ CG+++DA +VF++M N V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219
Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
SWN++I+ NG A EAL +F+ M + P++VT V+SAC + G+ +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLE--SRVEPDEVTLASVISACASLSAIKVGQEVHG 277
Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
+ + L + VD+YA+ + EA + MP
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 199/555 (35%), Positives = 304/555 (54%), Gaps = 28/555 (5%)
Query: 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL-------KDFNYASLLFHQ 77
+ +LS L+ C S + Q+H M+ + + + L R+ID + +YA +F
Sbjct: 7 KPILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFES 66
Query: 78 ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
I P+ Y +N MIRG + + +L Y +M R G PD FT+P+V +C+ L +
Sbjct: 67 IDCPSVYIWNSMIRGYSNSPNP-DKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 125
Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
G VH V K G + + +VS L+ MY CG+++ +VF++I + ++V+W S+ISG+
Sbjct: 126 GSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN 185
Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV--------VKN 249
+A+E F M+ +E +V +L +CG D+V GKW GF+ ++
Sbjct: 186 NNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQS 245
Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
K+ N + ++LIDMY KCG L AR +FD M + +V+WN++IT Y+QNG + EA+ +F
Sbjct: 246 KVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 305
Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD--IFC--------- 358
M G+ PDK+T + V+ A G LG+ + Y S+ G D I C
Sbjct: 306 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKT 365
Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
G + A K FED+ + ++W +I LA +G +EAL +F+RM +E G A P+ +T++G
Sbjct: 366 GDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRM-QEKGNATPDGITYLG 424
Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
VL AC H GLV+EG+R F M GL P EHY CMVD+ +RAG EA V+ MP K
Sbjct: 425 VLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVK 484
Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
+ + GALL C +N +++ R+ ++ E E SG YV+ S I+A W D +R
Sbjct: 485 PNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIR 544
Query: 539 ALMREKGVSKTPGCS 553
M+ K V K G S
Sbjct: 545 ESMKSKRVDKVLGHS 559
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 192/576 (33%), Positives = 309/576 (53%), Gaps = 50/576 (8%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFI-QKPN---FLLIRIIDLKDFNYASLLFHQISRPN 82
+L L C S ++Q+H +L I K N F L + +YA +F I P
Sbjct: 15 ILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPP 74
Query: 83 E-YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
E FN +R L+ + + + ++ Y +++ +G + D F++ + + + + AL G+ +
Sbjct: 75 ESIVFNPFLRDLSRSSEPRA-TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMEL 133
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
H FKI D V + MYA CG+++ AR VFDE+ RD+V+WN+MI Y + G
Sbjct: 134 HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDL------ 253
EA +LF M++ +PDE+ L +++ +CG G++ + + F+++N +MD
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253
Query: 254 -----------------------NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWN 290
N ++ +A++ Y KCG L A+ +FD KD+V W
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313
Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
MI+AY ++ EA+ +F M +G+ PD +++ V+SACA++G LD KWV
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373
Query: 351 GLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399
GL ++ CG +D VFE MP N VSW++MI+AL+ +G A +AL LF
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433
Query: 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
RM +E PN+VTF+GVL C H+GLV+EG+++F M+ + + PK EHY CMVDL+
Sbjct: 434 ARMKQEN--VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491
Query: 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519
RA L EA + +E MP + ++ G+L+ AC+ ++ + + +LE+E + G V
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551
Query: 520 ISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
+ S I+A + W+D +R +M EK V K G S I
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/484 (39%), Positives = 281/484 (58%), Gaps = 18/484 (3%)
Query: 86 FNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
+NV +R L A+Q +S S+ LY M R G PD F++PF+ SCA+L G +H
Sbjct: 21 WNVRLREL--AYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 78
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS--WNSMISGYSKMGYAK 202
V K G + + V +LI+MY +CG + ARKVF+E + +S +N++ISGY+
Sbjct: 79 VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+A +F RM+E D +T++ ++ C L LG+ + G VK +D + ++ I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MY KCG++ RR+FD M K ++TWNA+I+ Y+QNGL+ + + L+ +MK +GV PD
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
TL+ VLS+CA +GA +G V K G ++F CG++ A VF+ M
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
PV + VSW AMI +G L+LF+ M K G RP+ F+ VLSAC H+GL D+
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRG--IRPDGAVFVMVLSACSHSGLTDK 376
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G LF M + L P EHYSC+VDL RAG L EA +F+E MP + D V GALLGAC
Sbjct: 377 GLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGAC 436
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+ KN D+++ ++E E +N G YV+ S I+++ K + ++R +MRE+ K PG
Sbjct: 437 KIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPG 496
Query: 552 CSWI 555
S++
Sbjct: 497 YSYV 500
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 209/414 (50%), Gaps = 27/414 (6%)
Query: 30 LLKKCPSTK---TVQQIHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPN 82
+LK C S + QQ+H + + F+L +I + A +F + + +
Sbjct: 59 ILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSS 118
Query: 83 EYA--FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
+ + +N +I G T A K + + ++ +MK G+ D+ T + C L G S
Sbjct: 119 QLSVCYNALISGYT-ANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
+H K GLD + V +S ITMY +CG +++ R++FDE+ + L++WN++ISGYS+ G
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
A + +EL+ +M+ PD TLVSVL SC LG +G V V N N ++ +A
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNA 297
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
I MY +CG L AR VFD M K +V+W AMI Y +G+ +MLF+ M G+ PD
Sbjct: 298 SISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357
Query: 321 KITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF--CGSIDDALKVF 368
+ VLSAC+ G D G + +Y + G H D+ G +D+A++
Sbjct: 358 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 417
Query: 369 EDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS 421
E MPV + W A++ A + A L F ++ + PN++ + ++S
Sbjct: 418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE----FEPNNIGYYVLMS 467
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 335 bits (859), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 196/553 (35%), Positives = 307/553 (55%), Gaps = 25/553 (4%)
Query: 27 LLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQIS 79
L ++L C P + +QIH +L ++ L+ +ID A LF+ +
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311
Query: 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
N ++ ++ G + +++L+ M + GLKPD + + SCA+L AL G
Sbjct: 312 NKNIISWTTLLSGYKQN-ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGT 370
Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
VH+ K L D +V++SLI MYA+C L ARKVFD D+V +N+MI GYS++G
Sbjct: 371 QVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG 430
Query: 200 YA---KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
EA+ +F MR P +T VS+L + L L L K + G + K ++L+ +
Sbjct: 431 TQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIF 490
Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG 316
GSALID+Y C L +R VFD M KD+V WN+M Y Q + EA+ LF ++ +
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550
Query: 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDAL 365
PD+ T +++A ++ ++ LG+ +RGL + + CGS +DA
Sbjct: 551 ERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAH 610
Query: 366 KVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425
K F+ + V WN++IS+ A +G +AL + E+M EG PN +TF+GVLSAC H
Sbjct: 611 KAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG--IEPNYITFVGVLSACSH 668
Query: 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485
AGLV++G + F+LM FG+ P++EHY CMV L RAG L++A + +E+MP K IV
Sbjct: 669 AGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWR 727
Query: 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545
+LL C K N ++++ ++ + + +SG++ + S I+A+ MW ++ K+R M+ +G
Sbjct: 728 SLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEG 787
Query: 546 VSKTPGCSWIGID 558
V K PG SWIGI+
Sbjct: 788 VVKEPGRSWIGIN 800
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 139/531 (26%), Positives = 249/531 (46%), Gaps = 29/531 (5%)
Query: 43 IHTQMLINFIQKPNFLLIRIIDLKD----FNYASLLFHQISRPNEYAFNVMIRGLTTAWQ 98
+H Q+++ ++ +L +I+L YA +F ++ N +++ M+
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHH-G 124
Query: 99 KYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGV--SVHSSVFKIGLDEDDH 155
Y SL ++ + R P+ + +C+ L + + S + K G D D +
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVY 184
Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
V LI Y + G +D AR VFD + E+ V+W +MISG KMG + +++LF ++ E+
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
+PD L +VL +C L L GK + +++ ++++ + + LID Y KCG ++ A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304
Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
++F+ M NK++++W +++ Y QN L EA+ LF M G+ PD +L++CAS+
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLH 364
Query: 336 ALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI- 383
AL G V Y + L +D + C + DA KVF+ + V +NAMI
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424
Query: 384 --SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
S L HEAL +F M RP+ +TF+ +L A + +++ LM
Sbjct: 425 GYSRLGTQWELHEALNIFRDMRFR--LIRPSLLTFVSLLRASASLTSLGLSKQIHGLM-F 481
Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL--GALLGACQKQKNTDV 499
+GL S ++D+Y+ L ++ + M KV ++V+ G Q+ +N +
Sbjct: 482 KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM--KVKDLVIWNSMFAGYVQQSENEEA 539
Query: 500 SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTP 550
++L L E + + NL + + ++G+ P
Sbjct: 540 LNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNP 590
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 291/502 (57%), Gaps = 13/502 (2%)
Query: 68 FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127
F+ AS LF +SR + +N MI G + SL +Y+M G+ PD T+ +
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGL-MEESLTFFYEMISSGVLPDAITFSSLLP 348
Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVS 187
S + L + +H + + + D ++ +LI Y +C + A+ +F + D+V
Sbjct: 349 SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVV 408
Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
+ +MISGY G +++E+F + + + P+EITLVS+L G L L LG+ + GF++
Sbjct: 409 FTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFII 468
Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
K D +G A+IDMY KCG + A +F+ + +D+V+WN+MIT AQ+ + AI
Sbjct: 469 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAID 528
Query: 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------- 357
+F +M +G+ D +++ LSACA++ + GK + + + L D++
Sbjct: 529 IFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYA 588
Query: 358 -CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF 416
CG++ A+ VF+ M N VSWN++I+A +G+ ++L LF M ++ G RP+ +TF
Sbjct: 589 KCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG-IRPDQITF 647
Query: 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
+ ++S+C H G VDEG R F M+ +G+ P+ EHY+C+VDL+ RAG L+EA++ V+ MP
Sbjct: 648 LEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMP 707
Query: 477 EKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536
D V G LLGAC+ KN ++++ L++++ SNSG YV+ S AN + W+ K
Sbjct: 708 FPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTK 767
Query: 537 MRALMREKGVSKTPGCSWIGID 558
+R+LM+E+ V K PG SWI I+
Sbjct: 768 VRSLMKEREVQKIPGYSWIEIN 789
Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 129/494 (26%), Positives = 233/494 (47%), Gaps = 25/494 (5%)
Query: 23 LREKLLSLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLF 75
+ +L LL+ C + + +Q+H +++N I ++ RI+ + F+ +F
Sbjct: 34 IPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMF 93
Query: 76 HQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
+++ R + +N +I + +L Y++M G+ PD T+P + +C L
Sbjct: 94 YRLDLRRSSIRPWNSIISSFVRNGL-LNQALAFYFKMLCFGVSPDVSTFPCLVKACVALK 152
Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
+ +V +G+D ++ V+ SLI Y GK+D K+FD + ++D V WN M++
Sbjct: 153 NFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLN 212
Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
GY+K G ++ F MR ++ P+ +T VL C + LG + G VV + +D
Sbjct: 213 GYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDF 272
Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
+ ++L+ MY KCG A ++F M D VTWN MI+ Y Q+GL E++ F M
Sbjct: 273 EGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMI 332
Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSID 362
+GV PD IT +L + + L+ K + Y + + DIF C +
Sbjct: 333 SSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVS 392
Query: 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422
A +F + V + AMIS NG ++L +F + K PN++T + +L
Sbjct: 393 MAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKV--KISPNEITLVSILPV 450
Query: 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI 482
+ GR L + G + ++D+YA+ G ++ A++ ER+ ++ D +
Sbjct: 451 IGILLALKLGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKR-DIV 508
Query: 483 VLGALLGACQKQKN 496
+++ C + N
Sbjct: 509 SWNSMITRCAQSDN 522
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/510 (37%), Positives = 287/510 (56%), Gaps = 23/510 (4%)
Query: 69 NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
N +L + + + +++N +I L + + +L + M++L L P ++P +
Sbjct: 27 NLTTLFNRYVDKTDVFSWNSVIADLARSGDS-AEALLAFSSMRKLSLYPTRSSFPCAIKA 85
Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
C++L + G H F G D VS +LI MY+ CGKL+ ARKVFDEI +R++VSW
Sbjct: 86 CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145
Query: 189 NSMISGYSKMGYAKEAVELFGRMREEE------FLPDEITLVSVLGSCGDLGDLVLGKWV 242
SMI GY G A +AV LF + +E D + LVSV+ +C + L + +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205
Query: 243 EGFVVKNKMDLNFYMGSALIDMYGKCG--ALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
FV+K D +G+ L+D Y K G + AR++FD +V+KD V++N++++ YAQ+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265
Query: 301 LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
+SNEA +F R+ K V + ITL VL A + GAL +GK + + GL D+
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325
Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
CG ++ A K F+ M N SW AMI+ +G A +AL LF M G
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG-- 383
Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
RPN +TF+ VL+AC HAGL EG R F+ M FG+ P EHY CMVDL RAG L +A
Sbjct: 384 VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443
Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528
+D ++RM K D I+ +LL AC+ KN ++++ + L E++SSN G Y++ S I+A+
Sbjct: 444 YDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADA 503
Query: 529 KMWDDSAKMRALMREKGVSKTPGCSWIGID 558
W D ++R +M+ +G+ K PG S + ++
Sbjct: 504 GRWKDVERVRMIMKNRGLVKPPGFSLLELN 533
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 189/527 (35%), Positives = 290/527 (55%), Gaps = 50/527 (9%)
Query: 78 ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
+ P+ +N M++ L + ++ L L+ +++ GL PDNFT P V S L +
Sbjct: 6 LQTPSLLMYNKMLKSLADG-KSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
G VH K GL+ D +VS+SL+ MYA GK++ KVFDE+ +RD+VSWN +IS Y
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 198 MGYAKEAVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
G ++A+ +F RM +E L DE T+VS L +C L +L +G+ + FVV + +++
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183
Query: 257 MGSALIDMYGKCGALVPARRVFDAMVNK-------------------------------D 285
+G+AL+DM+ KCG L AR VFD+M +K D
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKD 243
Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
VV W AM+ Y Q +EA+ LF M+ AG+ PD L+ +L+ CA GAL+ GKW+
Sbjct: 244 VVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHG 303
Query: 346 YASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
Y ++ + D CG I+ AL+VF ++ + SW ++I LA NG +
Sbjct: 304 YINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGR 363
Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
AL L+ M G R + +TF+ VL+AC H G V EGR++F M+ + PKSEH SC
Sbjct: 364 ALDLYYEMENVG--VRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSC 421
Query: 455 MVDLYARAGHLSEAWDFVERMPEKVDEI---VLGALLGACQKQKNTDVSQRVMQLLLEIE 511
++DL RAG L EA + +++M + DE V +LL A + N +++RV + L ++E
Sbjct: 422 LIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVE 481
Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
S+S + + + ++A+ W+D +R M++ G+ K PGCS I ID
Sbjct: 482 VSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEID 528
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 123/268 (45%), Gaps = 2/268 (0%)
Query: 15 TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
TE + L+ + KC + + M ++ ++ + + A +L
Sbjct: 176 TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVL 235
Query: 75 FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
F + + + M+ G + ++ +L+L+ M+ G++PDNF + CA A
Sbjct: 236 FERSPVKDVVLWTAMMNGYVQ-FNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGA 294
Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
L G +H + + + D V +L+ MYA+CG +++A +VF EI+ERD SW S+I G
Sbjct: 295 LEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYG 354
Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV-EGFVVKNKMDL 253
+ G + A++L+ M D IT V+VL +C G + G+ + ++ +
Sbjct: 355 LAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQP 414
Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAM 281
S LID+ + G L A + D M
Sbjct: 415 KSEHCSCLIDLLCRAGLLDEAEELIDKM 442
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 329 bits (843), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 178/528 (33%), Positives = 286/528 (54%), Gaps = 50/528 (9%)
Query: 75 FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
F + P A+ +IR T +S +L + +M+ G PD+ +P V SC ++
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQ-SLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120
Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR---------CGK---------------- 169
L G SVH + ++G+D D + ++L+ MYA+ G
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180
Query: 170 -----------LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218
+DS R+VF+ + +D+VS+N++I+GY++ G ++A+ + M + P
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240
Query: 219 DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVF 278
D TL SVL + D++ GK + G+V++ +D + Y+GS+L+DMY K + + RVF
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 279 DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
+ +D ++WN+++ Y QNG NEA+ LF +M A V P + V+ ACA + L
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360
Query: 339 LGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387
LGK + Y + G +IF CG+I A K+F+ M V +EVSW A+I A
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHA 420
Query: 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447
+G HEA+ LFE M ++G +PN V F+ VL+AC H GLVDE F+ M+ +GL
Sbjct: 421 LHGHGHEAVSLFEEMKRQG--VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ 478
Query: 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLL 507
+ EHY+ + DL RAG L EA++F+ +M + V LL +C KN +++++V + +
Sbjct: 479 ELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKI 538
Query: 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
++S N G YV+ ++A+ W + AK+R MR+KG+ K P CSWI
Sbjct: 539 FTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 202/410 (49%), Gaps = 37/410 (9%)
Query: 74 LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL 133
+F + R + ++N +I G + Y +L++ +M LKPD+FT V + +
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGM-YEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256
Query: 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMIS 193
+ G +H V + G+D D ++ SL+ MYA+ +++ + +VF + RD +SWNS+++
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316
Query: 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
GY + G EA+ LF +M + P + SV+ +C L L LGK + G+V++
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376
Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
N ++ SAL+DMY KCG + AR++FD M D V+W A+I +A +G +EA+ LF MK
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436
Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
GV P+++ + VL+AC+ +G +D W G + KV+ +
Sbjct: 437 RQGVKPNQVAFVAVLTACSHVGLVDEA-W----------------GYFNSMTKVY---GL 476
Query: 374 TNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL--- 428
E+ + A+ L G+ EA +M E P + +LS+C VH L
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVE-----PTGSVWSTLLSSCSVHKNLELA 531
Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
++F + S + G Y M ++YA G E RM +K
Sbjct: 532 EKVAEKIFTVDSENMGA------YVLMCNMYASNGRWKEMAKLRLRMRKK 575
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 181/385 (47%), Gaps = 58/385 (15%)
Query: 155 HVSHSL-ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213
H S S+ I++Y L A +F ++ +++W S+I ++ +A+ F MR
Sbjct: 39 HTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRA 98
Query: 214 EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC----- 268
PD SVL SC + DL G+ V GF+V+ MD + Y G+AL++MY K
Sbjct: 99 SGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGS 158
Query: 269 --------------------------GALVP-----ARRVFDAMVNKDVVTWNAMITAYA 297
++P RRVF+ M KDVV++N +I YA
Sbjct: 159 KISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYA 218
Query: 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357
Q+G+ +A+ + M + PD TL VL + + GK + Y ++G+ D++
Sbjct: 219 QSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVY 278
Query: 358 CGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406
GS I+D+ +VF + + +SWN++++ NGR +EAL LF +M
Sbjct: 279 IGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVT-- 336
Query: 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHY--SCMVDLYARAG 463
+P V F V+ AC H + G++L ++ FG S + S +VD+Y++ G
Sbjct: 337 AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG----SNIFIASALVDMYSKCG 392
Query: 464 HLSEAWDFVERMPEKVDEIVLGALL 488
++ A +RM +DE+ A++
Sbjct: 393 NIKAARKIFDRM-NVLDEVSWTAII 416
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 54/272 (19%)
Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312
L+ S +I +Y L A +F + + V+ W ++I + L ++A+ F M
Sbjct: 37 LSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEM 96
Query: 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS------------ 360
+ +G PD VL +C + L G+ V + + G+ D++ G+
Sbjct: 97 RASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM 156
Query: 361 -----------------------------------IDDALKVFEDMPVTNEVSWNAMISA 385
ID +VFE MP + VS+N +I+
Sbjct: 157 GSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAG 216
Query: 386 LAFNGRAHEALLLFERMSKEGGAA--RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
A +G +AL RM +E G +P+ T VL V +G+ + +
Sbjct: 217 YAQSGMYEDAL----RMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK- 271
Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475
G+ S +VD+YA++ + ++ R+
Sbjct: 272 GIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 328 bits (841), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 178/499 (35%), Positives = 291/499 (58%), Gaps = 15/499 (3%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
A +F +++ + ++N +I G + L ++ QM G++ D T VF CA
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLA-EKGLSVFVQMLVSGIEIDLATIVSVFAGCA 307
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
+ ++ G +VHS K +D ++L+ MY++CG LDSA+ VF E+ +R +VS+ S
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367
Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
MI+GY++ G A EAV+LF M EE PD T+ +VL C L GK V ++ +N
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427
Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
+ + ++ +AL+DMY KCG++ A VF M KD+++WN +I Y++N +NEA+ LFN
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN 487
Query: 311 RM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL---RH------DIF--C 358
+ + +PD+ T+ VL ACAS+ A D G+ + Y + G RH D++ C
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547
Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
G++ A +F+D+ + VSW MI+ +G EA+ LF +M + G A ++++F+
Sbjct: 548 GALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA--DEISFVS 605
Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+L AC H+GLVDEG R F++M + P EHY+C+VD+ AR G L +A+ F+E MP
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
D + GALL C+ + ++++V + + E+E N+G YV+ + I+A + W+ ++R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725
Query: 539 ALMREKGVSKTPGCSWIGI 557
+ ++G+ K PGCSWI I
Sbjct: 726 KRIGQRGLRKNPGCSWIEI 744
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 243/459 (52%), Gaps = 25/459 (5%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLL---------IRIIDLKDFNYASLLFHQ 77
L S+L+ C +K+++ + + NFI+ F++ + + D AS +F +
Sbjct: 97 LCSVLQLCADSKSLKD--GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE 154
Query: 78 ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137
+ +N+++ L + +S S+ L+ +M G++ D++T+ V S ++L +++
Sbjct: 155 VKIEKALFWNILMNELAKSGD-FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHG 213
Query: 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK 197
G +H + K G E + V +SL+ Y + ++DSARKVFDE+ ERD++SWNS+I+GY
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257
G A++ + +F +M D T+VSV C D + LG+ V VK
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333
Query: 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317
+ L+DMY KCG L A+ VF M ++ VV++ +MI YA+ GL+ EA+ LF M+ G+
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393
Query: 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALK 366
+PD T+ VL+ CA LD GK V ++ + L DIF CGS+ +A
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453
Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
VF +M V + +SWN +I + N A+EAL LF + +E + P++ T VL AC
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS-PDERTVACVLPACASL 512
Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
D+GR + + + G + +VD+YA+ G L
Sbjct: 513 SAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGAL 550
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 48/372 (12%)
Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
+R + N+ + + + G + AV+L + + P TL SVL C D L GK
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115
Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
V+ F+ N ++ +GS L MY CG L A RVFD + + + WN ++ A++G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175
Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS- 360
+ +I LF +M +GV D T V + +S+ ++ G+ + + + G G+
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNS 235
Query: 361 ----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
+D A KVF++M + +SWN++I+ NG A + L +F +M G
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG--IE 293
Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDL------------------MSSSFGLIPKSE-- 450
+ T + V + C + L+ GR + + M S G + ++
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 451 ----------HYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNT 497
Y+ M+ YAR G EA E M E+ D + A+L C + +
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
Query: 498 DVSQRVMQLLLE 509
D +RV + + E
Sbjct: 414 DEGKRVHEWIKE 425
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 188/585 (32%), Positives = 311/585 (53%), Gaps = 58/585 (9%)
Query: 26 KLLSLLKKCPSTKTVQQIHTQMLINFI------QKPNFLLIRIIDLKDFNYASLLFHQIS 79
+ +S+L C +T +Q+H+Q + + QK F+ +YA LF +I
Sbjct: 36 RFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIP 95
Query: 80 RPNEYAFNVMIRGLTTAWQKY---SHSLKLYYQMKRLGLKPDNFTYPFVFISCA-NLLAL 135
P+ +N MI+G W K ++LY M + G+ PD+ T+PF+ + AL
Sbjct: 96 EPDVVVWNNMIKG----WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGAL 151
Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
G +H V K GL + +V ++L+ MY+ CG +D AR VFD + D+ SWN MISGY
Sbjct: 152 ACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
++M +E++EL M P +TL+ VL +C + D L K V +V + K + +
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSL 271
Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNA------------------------ 291
+ +AL++ Y CG + A R+F +M +DV++W +
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 292 -------MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344
MI Y + G NE++ +F M+ AG+ PD+ T++ VL+ACA +G+L++G+W+
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391
Query: 345 KYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393
Y + +++D+ CG + A KVF DM ++ +W AM+ LA NG+
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQ 451
Query: 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS 453
EA+ +F +M + + +P+D+T++GVLSAC H+G+VD+ R+ F M S + P HY
Sbjct: 452 EAIKVFFQM--QDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYG 509
Query: 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513
CMVD+ RAG + EA++ + +MP + IV GALLGA + + +++ + +LE+E
Sbjct: 510 CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPD 569
Query: 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
N Y + I+A K W D ++R + + + KTPG S I ++
Sbjct: 570 NGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 326 bits (835), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/540 (34%), Positives = 304/540 (56%), Gaps = 27/540 (5%)
Query: 40 VQQIHTQMLIN--FIQKPNFLLIRIID-----LKDFNYASLLFHQISRPNEYAFNVMI-- 90
++QIH +L + F + + L R++ F YA L Q+ + ++ +I
Sbjct: 17 LKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGH 76
Query: 91 -RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149
G T ++ S Y M+R G+ P T+P + + L N H+ + K G
Sbjct: 77 FSGGITLNRRLS--FLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFG 133
Query: 150 LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209
LD D V +SLI+ Y+ G D A ++FD ++D+V+W +MI G+ + G A EA+ F
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFV 193
Query: 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKC 268
M++ +E+T+VSVL + G + D+ G+ V G ++ ++ + ++GS+L+DMYGKC
Sbjct: 194 EMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKC 253
Query: 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328
A++VFD M +++VVTW A+I Y Q+ ++ +++F M + V P++ TL VL
Sbjct: 254 SCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVL 313
Query: 329 SACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDMPVTNEV 377
SACA +GAL G+ V Y + + + + CG +++A+ VFE + N
Sbjct: 314 SACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 373
Query: 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437
+W AMI+ A +G A +A LF M PN+VTF+ VLSAC H GLV+EGRRLF
Sbjct: 374 TWTAMINGFAAHGYARDAFDLFYTML--SSHVSPNEVTFMAVLSACAHGGLVEEGRRLFL 431
Query: 438 LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497
M F + PK++HY+CMVDL+ R G L EA +ERMP + +V GAL G+C K+
Sbjct: 432 SMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDY 491
Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557
++ + +++++ S+SG Y + + +++ + WD+ A++R M+++ V K+PG SWI +
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEV 551
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 169/442 (38%), Positives = 263/442 (59%), Gaps = 13/442 (2%)
Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
CA A+ + H + +I L+ D + + LI Y++CG ++ AR+VFD + ER LVSW
Sbjct: 71 CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130
Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
N+MI Y++ EA+++F MR E F E T+ SVL +CG D + K + VK
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVK 190
Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
+DLN Y+G+AL+D+Y KCG + A +VF++M +K VTW++M+ Y QN EA++L
Sbjct: 191 TCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLL 250
Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------- 357
+ R + + ++ TL V+ AC+++ AL GK + + G ++F
Sbjct: 251 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAK 310
Query: 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417
CGS+ ++ +F ++ N WN +IS A + R E ++LFE+M ++G PN+VTF
Sbjct: 311 CGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDG--MHPNEVTFS 368
Query: 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
+LS C H GLV+EGRR F LM +++GL P HYSCMVD+ RAG LSEA++ ++ +P
Sbjct: 369 SLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPF 428
Query: 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537
+ G+LL +C+ KN ++++ + L E+E N+GN+V+ S I+A K W++ AK
Sbjct: 429 DPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKS 488
Query: 538 RALMREKGVSKTPGCSWIGIDD 559
R L+R+ V K G SWI I D
Sbjct: 489 RKLLRDCDVKKVRGKSWIDIKD 510
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 147/258 (56%), Gaps = 3/258 (1%)
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA-NLLALNHGVSVHS 143
++N MI GL T + S +L ++ +M+ G K FT V +C N AL +H
Sbjct: 129 SWNTMI-GLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECK-KLHC 186
Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
K +D + +V +L+ +YA+CG + A +VF+ ++++ V+W+SM++GY + +E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246
Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263
A+ L+ R + ++ TL SV+ +C +L L+ GK + + K+ N ++ S+ +D
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306
Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
MY KCG+L + +F + K++ WN +I+ +A++ E ++LF +M+ G++P+++T
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 366
Query: 324 LIGVLSACASIGALDLGK 341
+LS C G ++ G+
Sbjct: 367 FSSLLSVCGHTGLVEEGR 384
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 14/264 (5%)
Query: 226 VLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKD 285
+L C G ++ K G +++ ++ + + + LI+ Y KCG + AR+VFD M+ +
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA-SIGALDLGKW-- 342
+V+WN MI Y +N + +EA+ +F M+ G + T+ VLSAC + AL+ K
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 343 --------VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
++ Y L CG I DA++VFE M + V+W++M++ N E
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246
Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
ALLL+ R + + N T V+ AC + + EG+++ ++ S G S
Sbjct: 247 ALLLYRRAQRM--SLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASS 303
Query: 455 MVDLYARAGHLSEAWDFVERMPEK 478
VD+YA+ G L E++ + EK
Sbjct: 304 AVDMYAKCGSLRESYIIFSEVQEK 327
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 119/227 (52%), Gaps = 3/227 (1%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
A +F + + ++ M+ G + Y +L LY + +R+ L+ + FT V +C+
Sbjct: 216 AVQVFESMQDKSSVTWSSMVAGYVQN-KNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 274
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
NL AL G +H+ + K G + V+ S + MYA+CG L + +F E++E++L WN+
Sbjct: 275 NLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNT 334
Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG-KWVEGFVVKN 249
+ISG++K KE + LF +M+++ P+E+T S+L CG G + G ++ +
Sbjct: 335 IISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTY 394
Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITA 295
+ N S ++D+ G+ G L A + ++ + W +++ +
Sbjct: 395 GLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 197/595 (33%), Positives = 303/595 (50%), Gaps = 78/595 (13%)
Query: 37 TKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRPNEYAFNVMIRG 92
++ V+ IH ++ FL I+ +K YA +F +I +PN +++N ++
Sbjct: 22 SRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLA 81
Query: 93 LTTA--------------------W----QKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128
+ A W + YS S + +K +F+ ++
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 129 CANLLALNH-------GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF---- 177
+L L+ G +H V K+G + V L+ MYA G + A+KVF
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201
Query: 178 ---------------------DEIR-----ERDLVSWNSMISGYSKMGYAKEAVELFGRM 211
D ++ E+D VSW +MI G ++ G AKEA+E F M
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM 261
Query: 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL 271
+ + D+ SVL +CG LG + GK + +++ + Y+GSALIDMY KC L
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331
A+ VFD M K+VV+W AM+ Y Q G + EA+ +F M+ +G++PD TL +SAC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Query: 332 ASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWN 380
A++ +L+ G A GL H + CG IDD+ ++F +M V + VSW
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441
Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440
AM+SA A GRA E + LF++M + G +P+ VT GV+SAC AGLV++G+R F LM+
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHG--LKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499
Query: 441 SSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVS 500
S +G++P HYSCM+DL++R+G L EA F+ MP D I LL AC+ + N ++
Sbjct: 500 SEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIG 559
Query: 501 QRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
+ + L+E++ + Y + S I+A+ WD A++R MREK V K PG SWI
Sbjct: 560 KWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 190/546 (34%), Positives = 304/546 (55%), Gaps = 21/546 (3%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRI----IDLKDFNYASLLFHQIS--R 80
LL++L + + QQ+H +++I+ + L + I ++A+ F++I +
Sbjct: 10 LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69
Query: 81 PNEYAFNVMIRGLTTAWQK-YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGV 139
N +++N ++ G + + YS L LY +M+R D+F F +C L L +G+
Sbjct: 70 RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129
Query: 140 SVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199
+H K GLD+DD+V+ SL+ MYA+ G ++SA+KVFDEI R+ V W ++ GY K
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189
Query: 200 YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK-MDLNFYMG 258
E LF MR+ D +TL+ ++ +CG++ +GK V G ++ +D + Y+
Sbjct: 190 KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQ 249
Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
+++IDMY KC L AR++F+ V+++VV W +I+ +A+ + EA LF +M +
Sbjct: 250 ASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESIL 309
Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKV 367
P++ TL +L +C+S+G+L GK V Y + G+ D CG+I A V
Sbjct: 310 PNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTV 369
Query: 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427
F+ MP N +SW++MI+A NG EAL F +M + PN VTF+ +LSAC H+G
Sbjct: 370 FDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQN--VVPNSVTFVSLLSACSHSG 427
Query: 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487
V EG + F+ M+ +G++P+ EHY+CMVDL RAG + EA F++ MP K GAL
Sbjct: 428 NVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487
Query: 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547
L AC+ K D++ + + LL +E S YV+ S I+A+ MW+ +R M KG
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYR 547
Query: 548 KTPGCS 553
K G S
Sbjct: 548 KHVGQS 553
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 323 bits (828), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/470 (35%), Positives = 271/470 (57%), Gaps = 16/470 (3%)
Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
+L+L+ +M+ G +P++ + +C+ LL L G +H K G + D++V+ +L+
Sbjct: 192 ALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVD 251
Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
MY +C L+ AR+VF ++ + LV+WNSMI GY G +K VE+ RM E P + T
Sbjct: 252 MYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTT 311
Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
L S+L +C +L+ GK++ G+V+++ ++ + Y+ +LID+Y KCG A VF +
Sbjct: 312 LTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVF-SKT 370
Query: 283 NKDVV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
KDV +WN MI++Y G +A+ ++++M GV PD +T VL AC+ + AL+ GK
Sbjct: 371 QKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGK 430
Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
+ S+ L D CG+ +A ++F +P + VSW MISA +G
Sbjct: 431 QIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHG 490
Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
+ EAL F+ M K G +P+ VT + VLSAC HAGL+DEG + F M S +G+ P E
Sbjct: 491 QPREALYQFDEMQKFG--LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIE 548
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNTDVSQRVMQLLLE 509
HYSCM+D+ RAG L EA++ +++ PE D +L L AC + R+ +LL+E
Sbjct: 549 HYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVE 608
Query: 510 IESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
++ Y++ ++A+ + WD + ++R M+E G+ K PGCSWI + D
Sbjct: 609 NYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSD 658
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 248/474 (52%), Gaps = 25/474 (5%)
Query: 26 KLLSLLKKCP-STKTVQQI---HTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQ 77
KLLSLL++C STK++++I H ++L +++ L +I++ KD A +F
Sbjct: 5 KLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFEN 64
Query: 78 IS-RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLAL 135
R + Y +N ++ G + + +L+++ ++ + PD+FT+P V + L
Sbjct: 65 FDIRSDVYIWNSLMSGYSKN-SMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGRE 123
Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
G +H+ V K G D V+ SL+ MYA+ +++ +VFDE+ ERD+ SWN++IS +
Sbjct: 124 FLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCF 183
Query: 196 SKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255
+ G A++A+ELFGRM F P+ ++L + +C L L GK + VK +L+
Sbjct: 184 YQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDE 243
Query: 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
Y+ SAL+DMYGKC L AR VF M K +V WN+MI Y G S + + NRM
Sbjct: 244 YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303
Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
G P + TL +L AC+ L GK++ Y + + DI+ CG + A
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLA 363
Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
VF SWN MIS+ G +A+ ++++M G +P+ VTF VL AC
Sbjct: 364 ETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVG--VKPDVVTFTSVLPACS 421
Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+++G+++ +S S L S ++D+Y++ G+ EA+ +P+K
Sbjct: 422 QLAALEKGKQIHLSISES-RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK 474
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/459 (36%), Positives = 269/459 (58%), Gaps = 13/459 (2%)
Query: 109 QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168
+M LG + Y + +C + AL G VH+ + K ++ L+ Y +C
Sbjct: 42 EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 101
Query: 169 KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLG 228
L+ ARKV DE+ E+++VSW +MIS YS+ G++ EA+ +F M + P+E T +VL
Sbjct: 102 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLT 161
Query: 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVT 288
SC L LGK + G +VK D + ++GS+L+DMY K G + AR +F+ + +DVV+
Sbjct: 162 SCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVS 221
Query: 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
A+I YAQ GL EA+ +F+R+ G++P+ +T +L+A + + LD GK +
Sbjct: 222 CTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVL 281
Query: 349 QRGLRH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
+R L D++ CG++ A ++F++MP +SWNAM+ + +G E L
Sbjct: 282 RRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 341
Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD-LMSSSFGLIPKSEHYSCMV 456
LF R+ ++ +P+ VT + VLS C H + D G +FD +++ +G P +EHY C+V
Sbjct: 342 LF-RLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIV 400
Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516
D+ RAG + EA++F++RMP K VLG+LLGAC+ + D+ + V + L+EIE N+G
Sbjct: 401 DMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAG 460
Query: 517 NYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
NYVI S ++A+ W D +RA+M +K V+K PG SWI
Sbjct: 461 NYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWI 499
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 222/462 (48%), Gaps = 42/462 (9%)
Query: 29 SLLKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRP 81
+LL C + + Q++H M+ +L R++ A + ++
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
N ++ MI + S +L ++ +M R KP+ FT+ V SC L G +
Sbjct: 117 NVVSWTAMISRYSQTGHS-SEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI 175
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
H + K D V SL+ MYA+ G++ AR++F+ + ERD+VS ++I+GY+++G
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLD 235
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
+EA+E+F R+ E P+ +T S+L + L L GK V++ ++ + ++L
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSL 295
Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-YAGVNPD 320
IDMY KCG L ARR+FD M + ++WNAM+ Y+++GL E + LF M+ V PD
Sbjct: 296 IDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 355
Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380
+TL+ VLS C+ G+ D GL +IF G + + P T +
Sbjct: 356 AVTLLAVLSGCSH------GRMEDT-----GL--NIFDGMVAGE---YGTKPGTEH--YG 397
Query: 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC-VHAGL-VDE--GRRLF 436
++ L GR EA +RM ++P +L AC VH + + E GRRL
Sbjct: 398 CIVDMLGRAGRIDEAFEFIKRM-----PSKPTAGVLGSLLGACRVHLSVDIGESVGRRLI 452
Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
++ + G +Y + +LYA AG ++ + M +K
Sbjct: 453 EIEPENAG------NYVILSNLYASAGRWADVNNVRAMMMQK 488
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 186/548 (33%), Positives = 300/548 (54%), Gaps = 24/548 (4%)
Query: 29 SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
S+LK C + +IH L ++ +I L K A +LF ++ +
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
++N MI G + +L L ++ + D+ T + +C N GV++HS
Sbjct: 218 SWNAMISGYCQSGNA-KEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSY 272
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
K GL+ + VS+ LI +YA G+L +KVFD + RDL+SWNS+I Y A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332
Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALID 263
+ LF MR PD +TL+S+ LGD+ + V+GF ++ L + +G+A++
Sbjct: 333 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392
Query: 264 MYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG-VNPDKI 322
MY K G + AR VF+ + N DV++WN +I+ YAQNG ++EAI ++N M+ G + ++
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDM 371
T + VL AC+ GAL G + + GL D+F CG ++DAL +F +
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
P N V WN +I+ F+G +A++LF+ M EG +P+ +TF+ +LSAC H+GLVDE
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG--VKPDHITFVTLLSACSHSGLVDE 570
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G+ F++M + +G+ P +HY CMVD+Y RAG L A F++ M + D + GALL AC
Sbjct: 571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+ N D+ + + L E+E + G +V+ S ++A+ W+ ++R++ KG+ KTPG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690
Query: 552 CSWIGIDD 559
S + +D+
Sbjct: 691 WSSMEVDN 698
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/480 (29%), Positives = 247/480 (51%), Gaps = 27/480 (5%)
Query: 29 SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEY 84
+L + C + ++ + +H +++++ + + ++++L + A F I + Y
Sbjct: 59 TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
A+N+MI G A M GL PD T+P V +C ++ G +H
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCL 175
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
K G D +V+ SLI +Y+R + +AR +FDE+ RD+ SWN+MISGY + G AKEA
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235
Query: 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDM 264
+ L +R D +T+VS+L +C + GD G + + +K+ ++ ++ + LID+
Sbjct: 236 LTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324
Y + G L ++VFD M +D+++WN++I AY N AI LF M+ + + PD +TL
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351
Query: 325 IGVLSACASIGALDLGKWVDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMP 372
I + S + +G + + V + ++G DI G+ +D A VF +P
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Query: 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432
T+ +SWN +IS A NG A EA+ ++ M +EG A N T++ VL AC AG + +G
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA-ANQGTWVSVLPACSQAGALRQG 470
Query: 433 RRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492
+L + + GL + + D+Y + G L +A ++P +V+ + L+ AC
Sbjct: 471 MKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI-ACH 527
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/499 (36%), Positives = 274/499 (54%), Gaps = 16/499 (3%)
Query: 74 LFHQISRPNEYAFNVMIRGLTTAW--QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
+F + N Y ++ M+ G T ++ L+ + K G D + + V S A
Sbjct: 175 VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAA 233
Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
+ + G +H K GL +S++L+TMY++C L+ A K+FD +R+ ++W++M
Sbjct: 234 TIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAM 293
Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
++GYS+ G + EAV+LF RM P E T+V VL +C D+ L GK + F++K
Sbjct: 294 VTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF 353
Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
+ + + +AL+DMY K G L AR+ FD + +DV W ++I+ Y QN + EA++L+ R
Sbjct: 354 ERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRR 413
Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGS 360
MK AG+ P+ T+ VL AC+S+ L+LGK V + + G ++ CGS
Sbjct: 414 MKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGS 473
Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
++D VF P + VSWNAMIS L+ NG+ EAL LFE M EG P+DVTF+ ++
Sbjct: 474 LEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEG--MEPDDVTFVNII 531
Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
SAC H G V+ G F++MS GL PK +HY+CMVDL +RAG L EA +F+E
Sbjct: 532 SACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHG 591
Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
+ LL AC+ ++ + L+ + S S YV S I+ L D ++
Sbjct: 592 LCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKH 651
Query: 541 MREKGVSKTPGCSWIGIDD 559
MR GVSK GCSWI + +
Sbjct: 652 MRANGVSKEVGCSWIELKN 670
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 207/427 (48%), Gaps = 24/427 (5%)
Query: 16 ELNDPSLLREKLLSLLKKCPSTKTVQQIHT----QMLINFIQKPNFLLIRIIDLKDFNYA 71
E +D + +LS L +QIH L+ F+ N L+ + N A
Sbjct: 216 EGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEA 275
Query: 72 SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
+F N ++ M+ G + + ++KL+ +M G+KP +T V +C++
Sbjct: 276 CKMFDSSGDRNSITWSAMVTGYSQNGESL-EAVKLFSRMFSAGIKPSEYTIVGVLNACSD 334
Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
+ L G +HS + K+G + + +L+ MYA+ G L ARK FD ++ERD+ W S+
Sbjct: 335 ICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSL 394
Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
ISGY + +EA+ L+ RM+ +P++ T+ SVL +C L L LGK V G +K+
Sbjct: 395 ISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGF 454
Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
L +GSAL MY KCG+L VF NKDVV+WNAMI+ + NG +EA+ LF
Sbjct: 455 GLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEE 514
Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKW---------------VDKYASQRGLRHDI 356
M G+ PD +T + ++SAC+ G ++ G W VD YA L
Sbjct: 515 MLAEGMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLDPKVDHYACMVDLLSR- 572
Query: 357 FCGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
G + +A + E + + + W ++SA +G+ + E++ G V
Sbjct: 573 -AGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQ 631
Query: 416 FIGVLSA 422
G+ +A
Sbjct: 632 LSGIYTA 638
Score = 189 bits (479), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 240/485 (49%), Gaps = 26/485 (5%)
Query: 15 TELNDPSLLREKLLSLLKKCPSTKTVQQIHTQML----INFIQKPNFLLIRIIDLKDFNY 70
TELN + K L+ + + + +H Q++ IQ N L+
Sbjct: 8 TELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAK 67
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH--SLKLYYQMKRLGLKPDNFTYPFVFIS 128
A +F+ I + ++N +I G + S ++L+ +M+ + P+ +T +F +
Sbjct: 68 AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127
Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
++L + G H+ V K+ D +V SL+ MY + G ++ KVF + ER+ +W
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTW 187
Query: 189 NSMISGYSKMGYAKEAVELFGR-MREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFV 246
++M+SGY+ G +EA+++F +RE+E D + +VL S + LG+ +
Sbjct: 188 STMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCIT 247
Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
+KN + + +AL+ MY KC +L A ++FD+ +++ +TW+AM+T Y+QNG S EA+
Sbjct: 248 IKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAV 307
Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
LF+RM AG+ P + T++GVL+AC+ I L+ GK + + + G +F
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 367
Query: 358 --CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
G + DA K F+ + + W ++IS N EAL+L+ RM G PND T
Sbjct: 368 AKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAG--IIPNDPT 425
Query: 416 FIGVLSACVHAGLVDEGRRLF-DLMSSSFGL-IPKSEHYSCMVDLYARAGHLSEAWDFVE 473
VL AC ++ G+++ + FGL +P S M Y++ G L +
Sbjct: 426 MASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTM---YSKCGSLEDGNLVFR 482
Query: 474 RMPEK 478
R P K
Sbjct: 483 RTPNK 487
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 196/385 (50%), Gaps = 24/385 (6%)
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
NL+A G +VH + + G ++ L+ YA+CGKL A +F+ I +D+VSWNS
Sbjct: 29 NLVA---GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNS 85
Query: 191 MISGYSKMG---YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
+I+GYS+ G + ++LF MR ++ LP+ TL + + L +G+ VV
Sbjct: 86 LITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVV 145
Query: 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307
K + Y+ ++L+ MY K G + +VF M ++ TW+ M++ YA G EAI
Sbjct: 146 KMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIK 205
Query: 308 LFN---RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF------- 357
+FN R K G + D + VLS+ A+ + LG+ + + GL +
Sbjct: 206 VFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVT 264
Query: 358 ----CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
C S+++A K+F+ N ++W+AM++ + NG + EA+ LF RM G +P++
Sbjct: 265 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAG--IKPSE 322
Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
T +GVL+AC ++EG++L + G + +VD+YA+AG L++A +
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFL-LKLGFERHLFATTALVDMYAKAGCLADARKGFD 381
Query: 474 RMPEKVDEIVLGALLGACQKQKNTD 498
+ E+ + + G Q N +
Sbjct: 382 CLQERDVALWTSLISGYVQNSDNEE 406
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 15/270 (5%)
Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272
+ E P TL+ L +LV G+ V G +++ + L++ Y KCG L
Sbjct: 7 QTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLA 66
Query: 273 PARRVFDAMVNKDVVTWNAMITAYAQNG---LSNEAIMLFNRMKYAGVNPDKITLIGVLS 329
A +F+A++ KDVV+WN++IT Y+QNG S + LF M+ + P+ TL G+
Sbjct: 67 KAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFK 126
Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
A +S+ + +G+ + DI+ G ++D LKVF MP N +
Sbjct: 127 AESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYT 186
Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
W+ M+S A GR EA+ +F +E +D F VLS+ V GR++
Sbjct: 187 WSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI-HC 245
Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
++ GL+ + +V +Y++ L+EA
Sbjct: 246 ITIKNGLLGFVALSNALVTMYSKCESLNEA 275
>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2
SV=1
Length = 572
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/511 (34%), Positives = 281/511 (54%), Gaps = 16/511 (3%)
Query: 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLK---DFNYASLLFHQISRP 81
+KL++ L+ C T V +IH M+ + K +F + +++ D YAS +F +S
Sbjct: 29 QKLINDLRSCRDTVEVSRIHGYMVKTGLDKDDFAVSKLLAFSSVLDIRYASSIFEHVSNT 88
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
N + FN MIRG + + + + ++ Q++ GL D F++ SC+ L ++ G +
Sbjct: 89 NLFMFNTMIRGYSIS-DEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGL 147
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSKMGY 200
H + G + ++LI Y CGK+ ARKVFDE+ + D V+++++++GY ++
Sbjct: 148 HGIALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSK 207
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
A++LF MR+ E + + TL+S L + DLGDL + +K +DL+ ++ +A
Sbjct: 208 KALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITA 267
Query: 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320
LI MYGK G + ARR+FD + KDVVTWN MI YA+ GL E + L +MKY + P+
Sbjct: 268 LIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPN 327
Query: 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS-----------IDDALKVFE 369
T +G+LS+CA A +G+ V + + D G+ ++ A+++F
Sbjct: 328 SSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFN 387
Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
M + SW AMIS +G A EA+ LF +M +E RPN++TF+ VL+AC H GLV
Sbjct: 388 RMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLV 447
Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
EG R F M ++ PK EHY C+VDL RAG L EA++ + +P D ALL
Sbjct: 448 MEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLA 507
Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520
AC+ N D+ + VM L E+ ++ + ++
Sbjct: 508 ACRVYGNADLGESVMMRLAEMGETHPADAIL 538
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 191/356 (53%), Gaps = 21/356 (5%)
Query: 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
F+ ++ G +K + +L L+ M++ + + T + ++L L+ S H
Sbjct: 195 FSTLMNGYLQVSKK-ALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLC 253
Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
KIGLD D H+ +LI MY + G + SAR++FD +D+V+WN MI Y+K G +E V
Sbjct: 254 IKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECV 313
Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
L +M+ E+ P+ T V +L SC +G+ V + + ++ L+ +G+AL+DMY
Sbjct: 314 WLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMY 373
Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAG--VNPDKIT 323
K G L A +F+ M +KDV +W AMI+ Y +GL+ EA+ LFN+M+ V P++IT
Sbjct: 374 AKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEIT 433
Query: 324 LIGVLSACASIGALDLG-----KWVDKYASQRGLRH-----DIF--CGSIDDALKVFEDM 371
+ VL+AC+ G + G + V+ Y+ + H D+ G +++A ++ ++
Sbjct: 434 FLVVLNACSHGGLVMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNL 493
Query: 372 PVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
P+T++ +W A+++A G A + R++ E G P D +L A HA
Sbjct: 494 PITSDSTAWRALLAACRVYGNADLGESVMMRLA-EMGETHPAD----AILLAGTHA 544
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/557 (34%), Positives = 305/557 (54%), Gaps = 31/557 (5%)
Query: 17 LNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASL--- 73
L+ PSLL L +L K C S + QIH +++ +++ L+ I + +SL
Sbjct: 5 LSHPSLL--SLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYS 62
Query: 74 --LFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCA 130
+F ++ P Y +N +I+G + + + ++ + +M R GL +PD +T+P V C+
Sbjct: 63 SSVFERVPSPGTYLWNHLIKGYSNKFL-FFETVSILMRMMRTGLARPDEYTFPLVMKVCS 121
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNS 190
N + G SVH V +IG D+D V S + Y +C L SARKVF E+ ER+ VSW +
Sbjct: 122 NNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTA 181
Query: 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250
++ Y K G +EA +F M E + ++ S GDLV K + F K
Sbjct: 182 LVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKS----GDLVNAKKL--FDEMPK 235
Query: 251 MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310
D+ Y +++ID Y K G +V AR +F+ DV W+A+I YAQNG NEA +F+
Sbjct: 236 RDIISY--TSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFS 293
Query: 311 RMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG------------LRHDIFC 358
M V PD+ ++G++SAC+ +G +L + VD Y QR + + C
Sbjct: 294 EMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKC 353
Query: 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418
G +D A K+FE+MP + VS+ +M+ +A +G EA+ LFE+M EG P++V F
Sbjct: 354 GHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEG--IVPDEVAFTV 411
Query: 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+L C + LV+EG R F+LM + ++ +HYSC+V+L +R G L EA++ ++ MP +
Sbjct: 412 ILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE 471
Query: 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
G+LLG C NT++++ V + L E+E ++G+YV+ S I+A L W D A +R
Sbjct: 472 AHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLR 531
Query: 539 ALMREKGVSKTPGCSWI 555
M E G++K G SWI
Sbjct: 532 DKMNENGITKICGRSWI 548
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 189/555 (34%), Positives = 297/555 (53%), Gaps = 32/555 (5%)
Query: 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISR 80
E+ L L KC + V+Q+H Q++ + + + ++I + N A +F+Q+
Sbjct: 20 EERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQE 79
Query: 81 PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140
PN + N +IR Q Y + ++ +M+R GL DNFTYPF+ +C+ L
Sbjct: 80 PNVHLCNSLIRAHAQNSQPY-QAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKM 138
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLD--SARKVFDEIRERDLVSWNSMISGYSKM 198
+H+ + K+GL D +V ++LI Y+RCG L A K+F+++ ERD VSWNSM+ G K
Sbjct: 139 MHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKA 198
Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYM 257
G ++A LF M + + + T++ C ++ + F + KM + N
Sbjct: 199 GELRDARRLFDEMPQRDLISWN-TMLDGYARCREMS--------KAFELFEKMPERNTVS 249
Query: 258 GSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
S ++ Y K G + AR +FD M K+VVTW +I YA+ GL EA L ++M +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309
Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDA 364
G+ D +I +L+AC G L LG + + L + + CG++ A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369
Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
VF D+P + VSWN M+ L +G EA+ LF RM +EG RP+ VTFI VL +C
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG--IRPDKVTFIAVLCSCN 427
Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
HAGL+DEG F M + L+P+ EHY C+VDL R G L EA V+ MP + + ++
Sbjct: 428 HAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIW 487
Query: 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544
GALLGAC+ D+++ V+ L++++ + GNY + S I+A + W+ A +R+ M+
Sbjct: 488 GALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSM 547
Query: 545 GVSKTPGCSWIGIDD 559
GV K G S + ++D
Sbjct: 548 GVEKPSGASSVELED 562
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/509 (33%), Positives = 281/509 (55%), Gaps = 14/509 (2%)
Query: 66 KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
+ N A +F ++ + ++N ++ G + +L++ M LKP T V
Sbjct: 184 RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMA-RMALEMVKSMCEENLKPSFITIVSV 242
Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
+ + L ++ G +H + G D ++S +L+ MYA+CG L++AR++FD + ER++
Sbjct: 243 LPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNV 302
Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
VSWNSMI Y + KEA+ +F +M +E P +++++ L +C DLGDL G+++
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362
Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
V+ +D N + ++LI MY KC + A +F + ++ +V+WNAMI +AQNG +A
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422
Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-------- 357
+ F++M+ V PD T + V++A A + KW+ + L ++F
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482
Query: 358 ---CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414
CG+I A +F+ M + +WNAMI +G AL LFE M K G +PN V
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK--GTIKPNGV 540
Query: 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVER 474
TF+ V+SAC H+GLV+ G + F +M ++ + +HY MVDL RAG L+EAWDF+ +
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQ 600
Query: 475 MPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534
MP K V GA+LGACQ KN + +++ + L E+ + G +V+ + I+ MW+
Sbjct: 601 MPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKV 660
Query: 535 AKMRALMREKGVSKTPGCSWIGIDDPKQS 563
++R M +G+ KTPGCS + I + S
Sbjct: 661 GQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 246/464 (53%), Gaps = 19/464 (4%)
Query: 30 LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYA 85
LL++C S K ++QI + N + + +F +++ L + A+ +F I
Sbjct: 43 LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL 102
Query: 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSV 145
++ M++G +L+ + +M+ ++P + + ++ C + L G +H +
Sbjct: 103 YHTMLKGFAKV-SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161
Query: 146 FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAV 205
K G D L MYA+C +++ ARKVFD + ERDLVSWN++++GYS+ G A+ A+
Sbjct: 162 VKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221
Query: 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY 265
E+ M EE P IT+VSVL + L + +GK + G+ +++ D + +AL+DMY
Sbjct: 222 EMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMY 281
Query: 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325
KCG+L AR++FD M+ ++VV+WN+MI AY QN EA+++F +M GV P ++++
Sbjct: 282 AKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVM 341
Query: 326 GVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVT 374
G L ACA +G L+ G+++ K + + GL ++ C +D A +F +
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401
Query: 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434
VSWNAMI A NGR +AL F +M +P+ T++ V++A + +
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSR--TVKPDTFTYVSVITAIAELSITHHAKW 459
Query: 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+ ++ S L + +VD+YA+ G + A + M E+
Sbjct: 460 IHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/509 (35%), Positives = 279/509 (54%), Gaps = 22/509 (4%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA 130
A LF +I +P+ ++N +I G A + ++ ++ L+ +M++LG + D FT + +C
Sbjct: 93 ARQLFDEIPQPDTVSYNTLISGYADARETFA-AMVLFKRMRKLGFEVDGFTLSGLIAACC 151
Query: 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWN 189
+ + L +H G D V+++ +T Y++ G L A VF + E RD VSWN
Sbjct: 152 DRVDLIK--QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWN 209
Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
SMI Y + +A+ L+ M + F D TL SVL + L L+ G+ G ++K
Sbjct: 210 SMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKA 269
Query: 250 KMDLNFYMGSALIDMYGKCGA---LVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNEA 305
N ++GS LID Y KCG + + +VF +++ D+V WN MI+ Y+ N LS EA
Sbjct: 270 GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEA 329
Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC------- 358
+ F +M+ G PD + + V SAC+++ + K + A + + +
Sbjct: 330 VKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALIS 389
Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
G++ DA VF+ MP N VS+N MI A +G EALLL++RM G A PN
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIA--PNK 447
Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVE 473
+TF+ VLSAC H G VDEG+ F+ M +F + P++EHYSCM+DL RAG L EA F++
Sbjct: 448 ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507
Query: 474 RMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533
MP K + ALLGAC+K KN +++R L+ ++ + YV+ + ++A+ + W++
Sbjct: 508 AMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEE 567
Query: 534 SAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
A +R MR K + K PGCSWI + K
Sbjct: 568 MASVRKSMRGKRIRKKPGCSWIEVKKKKH 596
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 167/334 (50%), Gaps = 20/334 (5%)
Query: 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD 219
++ YA+ K+ AR++FDEI + D VS+N++ISGY+ A+ LF RMR+ F D
Sbjct: 80 IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139
Query: 220 EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFD 279
TL ++ +C D DL+ K + F V D + +A + Y K G L A VF
Sbjct: 140 GFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFY 197
Query: 280 AMVN-KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338
M +D V+WN+MI AY Q+ +A+ L+ M + G D TL VL+A S+ L
Sbjct: 198 GMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLI 257
Query: 339 LGKWVDKYASQRGLRH---------DIF--CGSID---DALKVFEDMPVTNEVSWNAMIS 384
G+ + G D + CG D D+ KVF+++ + V WN MIS
Sbjct: 258 GGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMIS 317
Query: 385 ALAFNGR-AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443
+ N + EA+ F +M + G RP+D +F+ V SAC + + +++ L S
Sbjct: 318 GYSMNEELSEEAVKSFRQMQRIG--HRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSH 375
Query: 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477
+ + ++ LY ++G+L +A +RMPE
Sbjct: 376 IPSNRISVNNALISLYYKSGNLQDARWVFDRMPE 409
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 119/277 (42%), Gaps = 44/277 (15%)
Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV-----------P---------- 273
DL GK + VK+ + + Y+ + +++Y KCG L P
Sbjct: 23 DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK 82
Query: 274 ----------ARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323
AR++FD + D V++N +I+ YA + A++LF RM+ G D T
Sbjct: 83 AYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFT 142
Query: 324 LIGVLSACA-------SIGALDLGKWVDKYASQRGLRHDIFC--GSIDDALKVFEDM-PV 373
L G+++AC + + D Y+S + G + +A+ VF M +
Sbjct: 143 LSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDEL 202
Query: 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGR 433
+EVSWN+MI A + +AL L++ M +G + + T VL+A + GR
Sbjct: 203 RDEVSWNSMIVAYGQHKEGAKALALYKEMIFKG--FKIDMFTLASVLNALTSLDHLIGGR 260
Query: 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
+ + + G S S ++D Y++ G +D
Sbjct: 261 QFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYD 296
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 192/568 (33%), Positives = 293/568 (51%), Gaps = 80/568 (14%)
Query: 67 DFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVF 126
D + F Q+ + + ++ MI G Q Y ++++ M + G++P FT V
Sbjct: 95 DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQ-YHKAIRVMGDMVKEGIEPTQFTLTNVL 153
Query: 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG------------------ 168
S A + G VHS + K+GL + VS+SL+ MYA+CG
Sbjct: 154 ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDIS 213
Query: 169 -------------KLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
++D A F+++ ERD+V+WNSMISG+++ GY A+++F +M +
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273
Query: 216 FL-PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
L PD TL SVL +C +L L +GK + +V D++ + +ALI MY +CG + A
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 275 RR---------------------------------VFDAMVNKDVVTWNAMITAYAQNGL 301
RR +F ++ ++DVV W AMI Y Q+G
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
EAI LF M G P+ TL +LS +S+ +L GK + A + G + +
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453
Query: 358 -------CGSIDDALKVFEDMPVTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409
G+I A + F+ + + VSW +MI ALA +G A EAL LFE M EG
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG--L 511
Query: 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAW 469
RP+ +T++GV SAC HAGLV++GR+ FD+M +IP HY+CMVDL+ RAG L EA
Sbjct: 512 RPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571
Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
+F+E+MP + D + G+LL AC+ KN D+ + + LL +E NSG Y + +++
Sbjct: 572 EFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACG 631
Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGI 557
W+++AK+R M++ V K G SWI +
Sbjct: 632 KWEEAAKIRKSMKDGRVKKEQGFSWIEV 659
Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 149/555 (26%), Positives = 242/555 (43%), Gaps = 92/555 (16%)
Query: 27 LLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAF 86
LL++ KC + + +M++ I N ++ + + + A F Q++ + +
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246
Query: 87 NVMIRGLTTAWQKYS-HSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVSVHSS 144
N MI G + Y +L ++ +M R L PD FT V +CANL L G +HS
Sbjct: 247 NSMISGFNQ--RGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSH 304
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARK----------------------------- 175
+ G D V ++LI+MY+RCG +++AR+
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364
Query: 176 ----VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231
+F +++RD+V+W +MI GY + G EA+ LF M P+ TL ++L
Sbjct: 365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVAS 424
Query: 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM-VNKDVVTWN 290
L L GK + G VK+ + + +ALI MY K G + A R FD + +D V+W
Sbjct: 425 SLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWT 484
Query: 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350
+MI A AQ+G + EA+ LF M G+ PD IT +GV SAC G ++ G+
Sbjct: 485 SMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ-------- 536
Query: 351 GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
+ + D K+ + + M+ G EA E+M E
Sbjct: 537 ------YFDMMKDVDKIIPTLS-----HYACMVDLFGRAGLLQEAQEFIEKMPIE----- 580
Query: 411 PNDVTFIGVLSACVHAGLVDEGR----RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
P+ VT+ +LSAC +D G+ RL L + G YS + +LY+ G
Sbjct: 581 PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGA------YSALANLYSACGKWE 634
Query: 467 EAWDFVERMPEKVDEIVLGALLGACQKQKN---TDVSQRVMQLLLEIESSNSGNYVISSK 523
EA + M + G +K++ +V +V +E G + ++
Sbjct: 635 EAAKIRKSMKD-----------GRVKKEQGFSWIEVKHKVHVFGVE-----DGTHPEKNE 678
Query: 524 IFANL-KMWDDSAKM 537
I+ + K+WD+ KM
Sbjct: 679 IYMTMKKIWDEIKKM 693
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 176/387 (45%), Gaps = 79/387 (20%)
Query: 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217
+++++ Y++ G +DS + FD++ +RD VSW +MI GY +G +A+ + G M +E
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
P + TL +VL S + GK V F+VK + N + ++L++MY KCG + A+ V
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203
Query: 278 FDAMV-------------------------------NKDVVTWNAMITAYAQNGLSNEAI 306
FD MV +D+VTWN+MI+ + Q G A+
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL 263
Query: 307 MLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKY------------------- 346
+F++M + + ++PD+ TL VLSACA++ L +GK + +
Sbjct: 264 DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323
Query: 347 -------------ASQRG------------LRHDIFCGSIDDALKVFEDMPVTNEVSWNA 381
QRG L I G ++ A +F + + V+W A
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383
Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
MI +G EA+ LF M GG RPN T +LS + G+++
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMV--GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVK 441
Query: 442 SFGLIPKSEHYSCMVDLYARAGHLSEA 468
S G I + ++ +YA+AG+++ A
Sbjct: 442 S-GEIYSVSVSNALITMYAKAGNITSA 467
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 274/478 (57%), Gaps = 27/478 (5%)
Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG-LDEDDHVSHSLI 161
+L+ +M G++PD FT V +C++L L G +H+ K G LDE+ V +L+
Sbjct: 286 ALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 345
Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE-FLPDE 220
MY C ++ S R+VFD + +R + WN+MI+GYS+ + KEA+ LF M E L +
Sbjct: 346 DMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405
Query: 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280
T+ V+ +C G + + GFVVK +D + ++ + L+DMY + G + A R+F
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465
Query: 281 MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-----------YAGVNPDKITLIGVLS 329
M ++D+VTWN MIT Y + +A++L ++M+ + P+ ITL+ +L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 330 ACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVS 378
+CA++ AL GK + YA + L D+ CG + + KVF+ +P N ++
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585
Query: 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438
WN +I A +G EA+ L M +G +PN+VTFI V +AC H+G+VDEG R+F +
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQG--VKPNEVTFISVFAACSHSGMVDEGLRIFYV 643
Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-VLGALLGACQKQKNT 497
M +G+ P S+HY+C+VDL RAG + EA+ + MP ++ +LLGA + N
Sbjct: 644 MKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNL 703
Query: 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
++ + Q L+++E + + +YV+ + I+++ +WD + ++R M+E+GV K PGCSWI
Sbjct: 704 EIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 236/468 (50%), Gaps = 33/468 (7%)
Query: 41 QQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95
+QIH + ++ + N L+ DF +F +IS N+ ++N +I L +
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 176
Query: 96 AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL---ALNHGVSVHSSVFKIGLDE 152
++K+ +L+ + M ++P +FT V +C+NL L G VH+ + G +
Sbjct: 177 -FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-EL 234
Query: 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212
+ + ++L+ MY + GKL S++ + RDLV+WN+++S + EA+E M
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294
Query: 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGAL 271
E PDE T+ SVL +C L L GK + + +KN +D N ++GSAL+DMY C +
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354
Query: 272 VPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSA 330
+ RRVFD M ++ + WNAMI Y+QN EA++LF M + AG+ + T+ GV+ A
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414
Query: 331 CASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSW 379
C GA + + + +RGL D F G ID A+++F M + V+W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474
Query: 380 NAMISALAFNGRAHEALLLFERMSK-----EGGAAR----PNDVTFIGVLSACVHAGLVD 430
N MI+ F+ +ALLL +M GA+R PN +T + +L +C +
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALA 534
Query: 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+G+ + + L S +VD+YA+ G L + +++P+K
Sbjct: 535 KGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 197/388 (50%), Gaps = 19/388 (4%)
Query: 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYA 165
Y M LG+KPDN+ +P + + A+L + G +H+ V+K G D V+++L+ +Y
Sbjct: 85 YVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYR 144
Query: 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225
+CG + KVFD I ER+ VSWNS+IS + A+E F M +E P TLVS
Sbjct: 145 KCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVS 204
Query: 226 VLGSCGDLG---DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
V+ +C +L L++GK V + ++ K +LN ++ + L+ MYGK G L ++ + +
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263
Query: 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342
+D+VTWN ++++ QN EA+ M GV PD+ T+ VL AC+ + L GK
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 343 VDKYASQRG-LRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNG 390
+ YA + G L + F GS + +VF+ M WNAMI+ + N
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
EALLLF M + G N T GV+ ACV +G + + GL
Sbjct: 384 HDKEALLLFIGMEESAGLL-ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRF 441
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEK 478
+ ++D+Y+R G + A +M ++
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGKMEDR 469
Score = 178 bits (452), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 122/412 (29%), Positives = 199/412 (48%), Gaps = 52/412 (12%)
Query: 86 FNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCANLLALNHGVSVHSS 144
+N MI G + + +L L+ M+ GL ++ T V +C A + ++H
Sbjct: 372 WNAMIAGYSQN-EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
V K GLD D V ++L+ MY+R GK+D A ++F ++ +RDLV+WN+MI+GY + ++A
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490
Query: 205 VELFGRMREEE-----------FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
+ L +M+ E P+ ITL+++L SC L L GK + + +KN +
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550
Query: 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313
+ +GSAL+DMY KCG L +R+VFD + K+V+TWN +I AY +G EAI L M
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610
Query: 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV 373
GV P+++T I V +AC+ G +D+ L++F M
Sbjct: 611 VQGVKPNEVTFISVFAACS------------------------HSGMVDEGLRIFYVMKP 646
Query: 374 TNEVS-----WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
V + ++ L GR EA L M P D G S+ + A
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM--------PRDFNKAGAWSSLLGASR 698
Query: 429 VDEGRRLFDLMSSSF-GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478
+ + ++ + + L P + HY + ++Y+ AG +A + M E+
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 750
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 16/286 (5%)
Query: 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247
W ++ + +EAV + M PD ++L + DL D+ LGK + V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 248 KNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
K ++ + + L+++Y KCG +VFD + ++ V+WN++I++ A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYASQRGLRHDIFC----- 358
F M V P TL+ V++AC+++ L +GK V Y ++G +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244
Query: 359 -----GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
G + + + + V+WN ++S+L N + EAL M EG P++
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG--VEPDE 302
Query: 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459
T VL AC H ++ G+ L + L S S +VD+Y
Sbjct: 303 FTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/544 (32%), Positives = 295/544 (54%), Gaps = 27/544 (4%)
Query: 31 LKKCPSTKTV---QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNE 83
LK C + + ++IH Q L+ N +L ++D+ + A +F+ I+ N
Sbjct: 149 LKACTELQDLDNGKKIHCQ-LVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNV 207
Query: 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143
+ MI G L L+ +M+ + + +TY + ++C L AL+ G H
Sbjct: 208 VCWTSMIAGYVKN-DLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHG 266
Query: 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203
+ K G++ + SL+ MY +CG + +AR+VF+E DLV W +MI GY+ G E
Sbjct: 267 CLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNE 326
Query: 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLNFYMGSALI 262
A+ LF +M+ E P+ +T+ SVL CG + +L LG+ V G +K + D N + +AL+
Sbjct: 327 ALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTN--VANALV 384
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
MY KC A+ VF+ KD+V WN++I+ ++QNG +EA+ LF+RM V P+ +
Sbjct: 385 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGV 444
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRH-----------DIF--CGSIDDALKVFE 369
T+ + SACAS+G+L +G + Y+ + G D + CG A +F+
Sbjct: 445 TVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFD 504
Query: 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429
+ N ++W+AMI G +L LFE M K+ +PN+ TF +LSAC H G+V
Sbjct: 505 TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKK--QQKPNESTFTSILSACGHTGMV 562
Query: 430 DEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLG 489
+EG++ F M + P ++HY+CMVD+ ARAG L +A D +E+MP + D GA L
Sbjct: 563 NEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLH 622
Query: 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
C D+ + V++ +L++ ++ YV+ S ++A+ W+ + ++R LM+++G+SK
Sbjct: 623 GCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKI 682
Query: 550 PGCS 553
G S
Sbjct: 683 AGHS 686
Score = 252 bits (644), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 171/520 (32%), Positives = 266/520 (51%), Gaps = 26/520 (5%)
Query: 10 RHLAFTELNDPSLLREKLLS----LLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDL 65
+ L TE ND S L S LL KC + +++Q H + N + + +++ L
Sbjct: 26 KELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSL 85
Query: 66 KDF----NYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT 121
F A L+F QI P+ Y + VM+R ++ +KLY + + G + D+
Sbjct: 86 YGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN-KESVEVVKLYDLLMKHGFRYDDIV 144
Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
+ +C L L++G +H + K+ D+ V L+ MYA+CG++ SA KVF++I
Sbjct: 145 FSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDIT 203
Query: 182 ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241
R++V W SMI+GY K +E + LF RMRE L +E T +++ +C L L GKW
Sbjct: 204 LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKW 263
Query: 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGL 301
G +VK+ ++L+ + ++L+DMY KCG + ARRVF+ + D+V W AMI Y NG
Sbjct: 264 FHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGS 323
Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL--------- 352
NEA+ LF +MK + P+ +T+ VLS C I L+LG+ V + + G+
Sbjct: 324 VNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANAL 383
Query: 353 -RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411
C DA VFE + V+WN++IS + NG HEAL LF RM+ E + P
Sbjct: 384 VHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE--SVTP 441
Query: 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEAW 469
N VT + SAC G + G L S G + S + + ++D YA+ G A
Sbjct: 442 NGVTVASLFSACASLGSLAVGSSL-HAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSAR 500
Query: 470 DFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509
+ + EK + I A++G KQ +T S + + +L+
Sbjct: 501 LIFDTIEEK-NTITWSAMIGGYGKQGDTIGSLELFEEMLK 539
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/398 (39%), Positives = 245/398 (61%), Gaps = 13/398 (3%)
Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
AR +F+ + E D+V +NSM GYS+ E LF + E+ LPD T S+L +C
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
L G+ + +K +D N Y+ LI+MY +C + AR VFD +V VV +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
IT YA+ NEA+ LF M+ + P++ITL+ VLS+CA +G+LDLGKW+ KYA +
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261
Query: 353 RH---------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
D+F CGS+DDA+ +FE M + +W+AMI A A +G+A +++L+FER
Sbjct: 262 CKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER 321
Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
M E +P+++TF+G+L+AC H G V+EGR+ F M S FG++P +HY MVDL +R
Sbjct: 322 MRSEN--VQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSR 379
Query: 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521
AG+L +A++F++++P ++ LL AC N D++++V + + E++ S+ G+YVI
Sbjct: 380 AGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVIL 439
Query: 522 SKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
S ++A K W+ +R +M+++ K PGCS I +++
Sbjct: 440 SNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477
Score = 229 bits (585), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 37/423 (8%)
Query: 5 AKAYSRHLAFTELNDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIID 64
A+ +++H +N + + L+ KC S + + QI + + I+ +F+ ++I+
Sbjct: 15 AETFTKHSKIDTVNT-----QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFV-AKLIN 68
Query: 65 L-------KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLK---LYYQMKRLG 114
+YA LF +S P+ FN M RG + ++++ L+ L+ ++ G
Sbjct: 69 FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARG----YSRFTNPLEVFSLFVEILEDG 124
Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
+ PDN+T+P + +CA AL G +H K+GLD++ +V +LI MY C +DSAR
Sbjct: 125 ILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSAR 184
Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
VFD I E +V +N+MI+GY++ EA+ LF M+ + P+EITL+SVL SC LG
Sbjct: 185 CVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLG 244
Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
L LGKW+ + K+ + +ALIDM+ KCG+L A +F+ M KD W+AMI
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIV 304
Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQ 349
AYA +G + +++++F RM+ V PD+IT +G+L+AC+ G ++ G+ V K+
Sbjct: 305 AYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIV 364
Query: 350 RGLRH-----DIF--CGSIDDALKVFEDMPVT-NEVSWNAMISALAFNGRAHEALLLFER 401
++H D+ G+++DA + + +P++ + W +++A + +H L L E+
Sbjct: 365 PSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACS----SHNNLDLAEK 420
Query: 402 MSK 404
+S+
Sbjct: 421 VSE 423
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 308 bits (789), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 175/488 (35%), Positives = 276/488 (56%), Gaps = 18/488 (3%)
Query: 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL-NHGVSVHSS 144
+N M+ YS +L L+ M++ + PD+FT V ISC ++L L N+G SVH+
Sbjct: 341 WNAMVAAYAENDYGYS-ALDLFGFMRQKSVLPDSFTLSNV-ISCCSVLGLYNYGKSVHAE 398
Query: 145 VFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204
+FK + + +L+T+Y++CG A VF + E+D+V+W S+ISG K G KEA
Sbjct: 399 LFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEA 458
Query: 205 VELFGRMREEE--FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+++FG M++++ PD + SV +C L L G V G ++K + LN ++GS+LI
Sbjct: 459 LKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLI 518
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
D+Y KCG A +VF +M +++V WN+MI+ Y++N L +I LFN M G+ PD +
Sbjct: 519 DLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSV 578
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHD-----------IFCGSIDDALKVFEDM 371
++ VL A +S +L GK + Y + G+ D + CG A +F+ M
Sbjct: 579 SITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKM 638
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
+ ++WN MI +G AL LF+ M K G + P+DVTF+ ++SAC H+G V+E
Sbjct: 639 QHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGES--PDDVTFLSLISACNHSGFVEE 696
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G+ +F+ M +G+ P EHY+ MVDL RAG L EA+ F++ MP + D + LL A
Sbjct: 697 GKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSAS 756
Query: 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551
+ N ++ + LL +E YV ++ + +++AK+ LM+EKG+ K PG
Sbjct: 757 RTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPG 816
Query: 552 CSWIGIDD 559
CSWI + D
Sbjct: 817 CSWIEVSD 824
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 223/458 (48%), Gaps = 26/458 (5%)
Query: 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNY-----ASLLFHQIS-RPNEYAFNVMIRGLT 94
+QIH ML N + +FL +ID+ F + A +F +I + N +NVMI G
Sbjct: 190 KQIHGFMLRNSLDTDSFLKTALIDMY-FKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFG 248
Query: 95 TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154
+ S SL LY K +K + ++ +C+ G +H V K+GL D
Sbjct: 249 GSGICES-SLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDP 307
Query: 155 HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
+V SL++MY++CG + A VF + ++ L WN+M++ Y++ Y A++LFG MR++
Sbjct: 308 YVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQK 367
Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
LPD TL +V+ C LG GK V + K + + SAL+ +Y KCG A
Sbjct: 368 SVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDA 427
Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK--YAGVNPDKITLIGVLSACA 332
VF +M KD+V W ++I+ +NG EA+ +F MK + PD + V +ACA
Sbjct: 428 YLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACA 487
Query: 333 SIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNA 381
+ AL G V + GL ++F CG + ALKVF M N V+WN+
Sbjct: 488 GLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNS 547
Query: 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441
MIS + N ++ LF M +G P+ V+ VL A + +G+ L +
Sbjct: 548 MISCYSRNNLPELSIDLFNLMLSQG--IFPDSVSITSVLVAISSTASLLKGKSLHGY-TL 604
Query: 442 SFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPEK 478
G IP H + ++D+Y + G A + ++M K
Sbjct: 605 RLG-IPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHK 641
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 201/387 (51%), Gaps = 25/387 (6%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFIS 128
A L+F + + A+ +I GL K+ +LK++ MK LKPD+ V +
Sbjct: 427 AYLVFKSMEEKDMVAWGSLISGLCKN-GKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485
Query: 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSW 188
CA L AL G+ VH S+ K GL + V SLI +Y++CG + A KVF + ++V+W
Sbjct: 486 CAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAW 545
Query: 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248
NSMIS YS+ + +++LF M + PD +++ SVL + L+ GK + G+ ++
Sbjct: 546 NSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 605
Query: 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML 308
+ + ++ +ALIDMY KCG A +F M +K ++TWN MI Y +G A+ L
Sbjct: 606 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSL 665
Query: 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV-----DKYASQRGLRH-----DIF- 357
F+ MK AG +PD +T + ++SAC G ++ GK + Y + + H D+
Sbjct: 666 FDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLG 725
Query: 358 -CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFE---RMSKEGGAARPN 412
G +++A + MP+ + S W ++SA + +L E RM E G+
Sbjct: 726 RAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGS---- 781
Query: 413 DVTFIGVLSACVHAGLVDEGRRLFDLM 439
T++ +++ + AGL +E +L LM
Sbjct: 782 --TYVQLINLYMEAGLKNEAAKLLGLM 806
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 208/440 (47%), Gaps = 40/440 (9%)
Query: 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP---DNFTYPFVFISCANLLALNHGVSV 141
+ N IR L + Y +L LY K G P FT+P + +C+ L L++G ++
Sbjct: 26 SINSGIRALIQKGE-YLQALHLY--SKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFD-------EIRERDLVSWNSMISG 194
H SV +G D ++ SL+ MY +CG LD A +VFD + RD+ WNSMI G
Sbjct: 83 HGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDG 142
Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL--GKWVEGFVVKNKMD 252
Y K KE V F RM PD +L V+ G+ GK + GF+++N +D
Sbjct: 143 YFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLD 202
Query: 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQNGLSNEAIMLFNR 311
+ ++ +ALIDMY K G + A RVF + +K +VV WN MI + +G+ ++ L+
Sbjct: 203 TDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYML 262
Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
K V + G L AC+ G+ + + GL +D + CG
Sbjct: 263 AKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGM 322
Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
+ +A VF + WNAM++A A N + AL LF M ++ + P+ T V+
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQK--SVLPDSFTLSNVI 380
Query: 421 SACVHAGLVDEGR----RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476
S C GL + G+ LF S I S ++ LY++ G +A+ + M
Sbjct: 381 SCCSVLGLYNYGKSVHAELFKRPIQSTSTIE-----SALLTLYSKCGCDPDAYLVFKSME 435
Query: 477 EKVDEIVLGALL-GACQKQK 495
EK D + G+L+ G C+ K
Sbjct: 436 EK-DMVAWGSLISGLCKNGK 454
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 181/570 (31%), Positives = 290/570 (50%), Gaps = 43/570 (7%)
Query: 29 SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRP 81
S+L+ C + ++ Q+H L + + +D+ + A +LF
Sbjct: 286 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENL 345
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
N ++N MI G + + +L L++++ GL D + VF +CA + L+ G+ +
Sbjct: 346 NRQSYNAMITGYSQEEHGFK-ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 404
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
+ K L D V+++ I MY +C L A +VFDE+R RD VSWN++I+ + + G
Sbjct: 405 YGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKG 464
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
E + LF M PDE T S+L +C G L G + +VK+ M N +G +L
Sbjct: 465 YETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSL 523
Query: 262 IDMYGKCGALVPARRV----------------FDAMVNKDV----VTWNAMITAYAQNGL 301
IDMY KCG + A ++ + M NK + V+WN++I+ Y
Sbjct: 524 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 583
Query: 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---- 357
S +A MLF RM G+ PDK T VL CA++ + LGK + ++ L+ D++
Sbjct: 584 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICST 643
Query: 358 -------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410
CG + D+ +FE + V+WNAMI A +G+ EA+ LFERM E +
Sbjct: 644 LVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILEN--IK 701
Query: 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470
PN VTFI +L AC H GL+D+G F +M +GL P+ HYS MVD+ ++G + A +
Sbjct: 702 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 761
Query: 471 FVERMPEKVDEIVLGALLGACQ-KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529
+ MP + D+++ LLG C + N +V++ LL ++ +S Y + S ++A+
Sbjct: 762 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 821
Query: 530 MWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
MW+ + +R MR + K PGCSW+ + D
Sbjct: 822 MWEKVSDLRRNMRGFKLKKEPGCSWVELKD 851
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/499 (25%), Positives = 239/499 (47%), Gaps = 52/499 (10%)
Query: 30 LLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPN 82
+ K+C ++ Q H M+I+ + F+L ++ + +DF AS++F ++ +
Sbjct: 54 VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD 113
Query: 83 EYAFNVMIRGLTTAWQKYS------------------------------HSLKLYYQMKR 112
++N MI G + + + S++++ M R
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173
Query: 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172
G++ D T+ + C+ L + G+ +H V ++G D D + +L+ MYA+ +
Sbjct: 174 EGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVE 233
Query: 173 ARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232
+ +VF I E++ VSW+++I+G + A++ F M++ + SVL SC
Sbjct: 234 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 293
Query: 233 LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292
L +L LG + +K+ + + +A +DMY KC + A+ +FD N + ++NAM
Sbjct: 294 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAM 353
Query: 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352
IT Y+Q +A++LF+R+ +G+ D+I+L GV ACA + L G + A + L
Sbjct: 354 ITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSL 413
Query: 353 RHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401
D+ C ++ +A +VF++M + VSWNA+I+A NG+ +E L LF
Sbjct: 414 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 473
Query: 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461
M + P++ TF +L AC G + G + + S G+ S ++D+Y++
Sbjct: 474 MLR--SRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSK 529
Query: 462 AGHLSEAWDFVERMPEKVD 480
G + EA R ++ +
Sbjct: 530 CGMIEEAEKIHSRFFQRAN 548
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 237/511 (46%), Gaps = 42/511 (8%)
Query: 66 KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV 125
K F + +F I N +++ +I G S +LK + +M+++ Y V
Sbjct: 229 KRFVESLRVFQGIPEKNSVSWSAIIAGCVQN-NLLSLALKFFKEMQKVNAGVSQSIYASV 287
Query: 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185
SCA L L G +H+ K D V + + MYA+C + A+ +FD +
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 347
Query: 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245
S+N+MI+GYS+ + +A+ LF R+ DEI+L V +C + L G + G
Sbjct: 348 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 407
Query: 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305
+K+ + L+ + +A IDMYGKC AL A RVFD M +D V+WNA+I A+ QNG E
Sbjct: 408 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 467
Query: 306 IMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH---------DI 356
+ LF M + + PD+ T +L AC G+L G + + G+ D+
Sbjct: 468 LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 526
Query: 357 F--CGSIDDALKV----FEDMPVTNE----------------VSWNAMISALAFNGRAHE 394
+ CG I++A K+ F+ V+ VSWN++IS ++ +
Sbjct: 527 YSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSED 586
Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454
A +LF RM + G P+ T+ VL C + G+++ + +S+ Y C
Sbjct: 587 AQMLFTRMMEMG--ITPDKFTYATVLDTCANLASAGLGKQIH---AQVIKKELQSDVYIC 641
Query: 455 --MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE 511
+VD+Y++ G L ++ E+ + D + A++ G K + Q +++LE
Sbjct: 642 STLVDMYSKCGDLHDSRLMFEKSLRR-DFVTWNAMICGYAHHGKGEEAIQLFERMILENI 700
Query: 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
N ++ + A++ + D + +M+
Sbjct: 701 KPNHVTFISILRACAHMGLIDKGLEYFYMMK 731
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 186/415 (44%), Gaps = 48/415 (11%)
Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR 181
+ FVF CA AL G H+ + G V + L+ +Y SA VFD++
Sbjct: 51 FSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMP 110
Query: 182 ERDLVSWNSMISGYSKM-------------------------------GYAKEAVELFGR 210
RD+VSWN MI+GYSK G + +++E+F
Sbjct: 111 LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 170
Query: 211 MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270
M E D T +L C L D LG + G VV+ D + SAL+DMY K
Sbjct: 171 MGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKR 230
Query: 271 LVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330
V + RVF + K+ V+W+A+I QN L + A+ F M+ + VL +
Sbjct: 231 FVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRS 290
Query: 331 CASIGALDLGKWVDKYASQ---------RGLRHDIF--CGSIDDALKVFEDMPVTNEVSW 379
CA++ L LG + +A + R D++ C ++ DA +F++ N S+
Sbjct: 291 CAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSY 350
Query: 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL- 438
NAMI+ + +ALLLF R+ G ++++ GV AC + EG +++ L
Sbjct: 351 NAMITGYSQEEHGFKALLLFHRLMSSGLGF--DEISLSGVFRACALVKGLSEGLQIYGLA 408
Query: 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
+ SS L + + +D+Y + L+EA+ + M + D + A++ A ++
Sbjct: 409 IKSSLSLDVCVANAA--IDMYGKCQALAEAFRVFDEMRRR-DAVSWNAIIAAHEQ 460
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 185/551 (33%), Positives = 297/551 (53%), Gaps = 23/551 (4%)
Query: 29 SLLKKCPSTKTV---QQIHTQML----INFIQKPNFLLIRIIDLKDFNYASLLFHQISRP 81
S++K C S+ V +Q+H Q++ + + N L+ + + AS +F+ I
Sbjct: 173 SIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK 232
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLLALNHGVS 140
+ +++ +I G + ++ +L +M G+ P+ + + +C++LL ++G
Sbjct: 233 DLISWSSIIAGFSQLGFEF-EALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQ 291
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
+H K L + SL MYARCG L+SAR+VFD+I D SWN +I+G + GY
Sbjct: 292 IHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGY 351
Query: 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSA 260
A EAV +F +MR F+PD I+L S+L + L G + +++K + + ++
Sbjct: 352 ADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNS 411
Query: 261 LIDMYGKCGALVPARRVF-DAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319
L+ MY C L +F D N D V+WN ++TA Q+ E + LF M + P
Sbjct: 412 LLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEP 471
Query: 320 DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVF 368
D IT+ +L C I +L LG V Y+ + GL + F CGS+ A ++F
Sbjct: 472 DHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIF 531
Query: 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL 428
+ M + VSW+ +I A +G EAL+LF+ M G PN VTF+GVL+AC H GL
Sbjct: 532 DSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAG--IEPNHVTFVGVLTACSHVGL 589
Query: 429 VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
V+EG +L+ M + G+ P EH SC+VDL ARAG L+EA F++ M + D +V LL
Sbjct: 590 VEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLL 649
Query: 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548
AC+ Q N ++Q+ + +L+I+ NS +V+ + A+ W+++A +R+ M++ V K
Sbjct: 650 SACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKK 709
Query: 549 TPGCSWIGIDD 559
PG SWI I+D
Sbjct: 710 IPGQSWIEIED 720
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 198/403 (49%), Gaps = 15/403 (3%)
Query: 121 TYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180
TY + +C++ +L G +H + D +++ +++MY +CG L AR+VFD +
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128
Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
ER+LVS+ S+I+GYS+ G EA+ L+ +M +E+ +PD+ S++ +C D+ LGK
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188
Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
+ V+K + + +ALI MY + + A RVF + KD+++W+++I ++Q G
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248
Query: 301 LSNEAIMLFNRMKYAGV-NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
EA+ M GV +P++ L AC+S+ D G + + L +
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308
Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
CG ++ A +VF+ + + SWN +I+ LA NG A EA+ +F +M G
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368
Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468
P+ ++ +L A + +G ++ + +G + + ++ +Y L
Sbjct: 369 --PDAISLRSLLCAQTKPMALSQGMQIHSYI-IKWGFLADLTVCNSLLTMYTFCSDLYCC 425
Query: 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511
++ E D + +L AC + + R+ +L+L E
Sbjct: 426 FNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSE 468
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 272/480 (56%), Gaps = 20/480 (4%)
Query: 89 MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKI 148
M+ G T +++ +L+++ +M GL + FT +C+ L + G H V
Sbjct: 134 MMSGYVTG-KEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITH 192
Query: 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF 208
G + + +S +L +Y + AR+VFDE+ E D++ W +++S +SK +EA+ LF
Sbjct: 193 GFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF 252
Query: 209 GRM-REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267
M R + +PD T +VL +CG+L L GK + G ++ N + N + S+L+DMYGK
Sbjct: 253 YAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGK 312
Query: 268 CGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327
CG++ AR+VF+ M K+ V+W+A++ Y QNG +AI +F M+ D V
Sbjct: 313 CGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME----EKDLYCFGTV 368
Query: 328 LSACASIGALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNE 376
L ACA + A+ LGK + +RG ++ G ID A +V+ M + N
Sbjct: 369 LKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNM 428
Query: 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF 436
++WNAM+SALA NGR EA+ F M K+G +P+ ++FI +L+AC H G+VDEGR F
Sbjct: 429 ITWNAMLSALAQNGRGEEAVSFFNDMVKKG--IKPDYISFIAILTACGHTGMVDEGRNYF 486
Query: 437 DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKN 496
LM+ S+G+ P +EHYSCM+DL RAG EA + +ER + D + G LLG C +
Sbjct: 487 VLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANAD 546
Query: 497 -TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
+ V++R+ + ++E+E +YV+ S ++ + D+ +R LM +GV+KT G SWI
Sbjct: 547 ASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWI 606
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 179/348 (51%), Gaps = 22/348 (6%)
Query: 71 ASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISC 129
A +F ++ P+ + ++ + Y +L L+Y M R GL PD T+ V +C
Sbjct: 217 ARRVFDEMPEPDVICWTAVLSAFSKN-DLYEEALGLFYAMHRGKGLVPDGSTFGTVLTAC 275
Query: 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWN 189
NL L G +H + G+ + V SL+ MY +CG + AR+VF+ + +++ VSW+
Sbjct: 276 GNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWS 335
Query: 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249
+++ GY + G ++A+E+F M E+ D +VL +C L + LGK + G V+
Sbjct: 336 ALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRR 391
Query: 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLF 309
N + SALID+YGK G + A RV+ M ++++TWNAM++A AQNG EA+ F
Sbjct: 392 GCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFF 451
Query: 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGK-----WVDKYASQRGLRH-----DIF-- 357
N M G+ PD I+ I +L+AC G +D G+ Y + G H D+
Sbjct: 452 NDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGR 511
Query: 358 CGSIDDALKVFEDMPVTNEVS-WNAMISALAFNGRAHEALLLFERMSK 404
G ++A + E N+ S W ++ A N +A + ER++K
Sbjct: 512 AGLFEEAENLLERAECRNDASLWGVLLGPCAANA---DASRVAERIAK 556
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 192/384 (50%), Gaps = 25/384 (6%)
Query: 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEI 180
Y + +C + + HG+ H+ V K GL+ D +V +SL+++Y + G + R+VFD
Sbjct: 64 YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123
Query: 181 RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240
+D +SW SM+SGY +A+E+F M +E TL S + +C +LG++ LG+
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGR 183
Query: 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300
G V+ + + N ++ S L +YG V ARRVFD M DV+ W A+++A+++N
Sbjct: 184 CFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKND 243
Query: 301 LSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357
L EA+ LF M + G+ PD T VL+AC ++ L GK + G+ ++
Sbjct: 244 LYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVE 303
Query: 358 ---------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408
CGS+ +A +VF M N VSW+A++ NG +A+ +F M ++
Sbjct: 304 SSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK--- 360
Query: 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFD--LMSSSFGLIPKSEHYSCMVDLYARAGHLS 466
+ F VL AC V G+ + + FG + S ++DLY ++G +
Sbjct: 361 ---DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE---SALIDLYGKSGCID 414
Query: 467 EAWDFVERMPEKVDEIVLGALLGA 490
A +M + + I A+L A
Sbjct: 415 SASRVYSKMSIR-NMITWNAMLSA 437
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 22/332 (6%)
Query: 197 KMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256
K+G EA+ + E S+L +C + + G VVK+ ++ +
Sbjct: 38 KLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRN 97
Query: 257 MGSALIDMYGKCG-ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315
+G++L+ +Y K G + RRVFD KD ++W +M++ Y +A+ +F M
Sbjct: 98 VGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSF 157
Query: 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI-----------DDA 364
G++ ++ TL + AC+ +G + LG+ G + F S DA
Sbjct: 158 GLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDA 217
Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
+VF++MP + + W A++SA + N EAL LF M + G P+ TF VL+AC
Sbjct: 218 RRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLV-PDGSTFGTVLTACG 276
Query: 425 HAGLVDEGRRLF-DLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIV 483
+ + +G+ + L+++ G E S ++D+Y + G + EA M +K + +
Sbjct: 277 NLRRLKQGKEIHGKLITNGIGSNVVVE--SSLLDMYGKCGSVREARQVFNGMSKK-NSVS 333
Query: 484 LGALLGA-CQKQKNTDVSQRVMQLLLEIESSN 514
ALLG CQ ++ ++ +++ E+E +
Sbjct: 334 WSALLGGYCQNGEH----EKAIEIFREMEEKD 361
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 173/513 (33%), Positives = 276/513 (53%), Gaps = 63/513 (12%)
Query: 103 SLKLYYQM-KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
+L+++ +M G +PDN T V CA+L + G +H + ++ V + L+
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271
Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---- 217
MYA+CG +D A VF + +D+VSWN+M++GYS++G ++AV LF +M+EE+
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331
Query: 218 -------------------------------PDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
P+E+TL+SVL C +G L+ GK + +
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391
Query: 247 VKNKMDL--------NFYMGSALIDMYGKCGALVPARRVFDAMVNK--DVVTWNAMITAY 296
+K +DL N + + LIDMY KC + AR +FD++ K DVVTW MI Y
Sbjct: 392 IKYPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 297 AQNGLSNEAIMLFNRM--KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
+Q+G +N+A+ L + M + P+ T+ L ACAS+ AL +GK + YA +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 355 ----------DIF--CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERM 402
D++ CGSI DA VF++M NEV+W ++++ +G EAL +F+ M
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM 570
Query: 403 SKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462
+ G + + VT + VL AC H+G++D+G F+ M + FG+ P EHY+C+VDL RA
Sbjct: 571 RRIG--FKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRA 628
Query: 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522
G L+ A +E MP + +V A L C+ ++ + + + E+ S++ G+Y + S
Sbjct: 629 GRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLS 688
Query: 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555
++AN W D ++R+LMR KGV K PGCSW+
Sbjct: 689 NLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWV 721
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 169/523 (32%), Positives = 257/523 (49%), Gaps = 69/523 (13%)
Query: 30 LLKKCPSTKTVQQIHTQML---INFIQKPNFLLIRIIDLKDFNYASLLFHQI--SRPNEY 84
+ KC + V+ IH ++L I + + L+ I + ++A L + S Y
Sbjct: 34 FIHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVY 93
Query: 85 AFNVMIR--GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
+N +IR G K L L+ M L PDN+T+PFVF +C + ++ G S H
Sbjct: 94 HWNSLIRSYGDNGCANK---CLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAH 150
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
+ G + V ++L+ MY+RC L ARKVFDE+ D+VSWNS+I Y+K+G K
Sbjct: 151 ALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPK 210
Query: 203 EAVELFGRMREE-EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
A+E+F RM E PD ITLV+VL C LG LGK + F V ++M N ++G+ L
Sbjct: 211 VALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCL 270
Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK-------- 313
+DMY KCG + A VF M KDVV+WNAM+ Y+Q G +A+ LF +M+
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330
Query: 314 ---------YA------------------GVNPDKITLIGVLSACASIGALDLGKWVDKY 346
YA G+ P+++TLI VLS CAS+GAL GK + Y
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390
Query: 347 ASQ-----RGLRH-----------DIF--CGSIDDALKVFEDMPVTNE--VSWNAMISAL 386
A + R H D++ C +D A +F+ + V+W MI
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL-MSSSFGL 445
+ +G A++AL L M +E RPN T L AC + G+++ + +
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510
Query: 446 IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL 488
+P +C++D+YA+ G +S+A + M K +E+ +L+
Sbjct: 511 VPLFVS-NCLIDMYAKCGSISDARLVFDNMMAK-NEVTWTSLM 551
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 42/356 (11%)
Query: 27 LLSLLKKCPSTKTV---QQIHTQMLINFIQ-------KPNFLLIRIIDL----KDFNYAS 72
L+S+L C S + ++IH + I N ++ ++ID+ K + A
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427
Query: 73 LLFHQISRPNE---YAFNVMIRGLTTAWQKYSHSLKLYYQM--KRLGLKPDNFTYPFVFI 127
+F +S P E + VMI G + + +L+L +M + +P+ FT +
Sbjct: 428 AMFDSLS-PKERDVVTWTVMIGGYSQHGDA-NKALELLSEMFEEDCQTRPNAFTISCALV 485
Query: 128 SCANLLALNHGVSVHSSVFKIGLDEDD-HVSHSLITMYARCGKLDSARKVFDEIRERDLV 186
+CA+L AL G +H+ + + VS+ LI MYA+CG + AR VFD + ++ V
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEV 545
Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
+W S+++GY GY +EA+ +F MR F D +TL+ VL +C G ++ + +E F
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSG--MIDQGMEYF- 602
Query: 247 VKNKMDLNFYMG------SALIDMYGKCGALVPARRVFDAM-VNKDVVTWNAMITAYAQN 299
N+M F + + L+D+ G+ G L A R+ + M + V W A ++ +
Sbjct: 603 --NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIH 660
Query: 300 GLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
G ++ N D TL+ L A A G+W D + +RH
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANA-------GRWKDVTRIRSLMRH 709
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 260/456 (57%), Gaps = 14/456 (3%)
Query: 115 LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174
+ D Y + C L G VH+ + + D + ++L+ MYA+CG L+ AR
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
KVF+++ +RD V+W ++ISGYS+ +A+ F +M + P+E TL SV+ +
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175
Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
G + GF VK D N ++GSAL+D+Y + G + A+ VFDA+ +++ V+WNA+I
Sbjct: 176 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 235
Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
+A+ + +A+ LF M G P + + AC+S G L+ GKWV Y + G +
Sbjct: 236 GHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295
Query: 355 DIFCG-----------SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
F G SI DA K+F+ + + VSWN++++A A +G EA+ FE M
Sbjct: 296 VAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMR 355
Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
+ G RPN+++F+ VL+AC H+GL+DEG ++LM G++P++ HY +VDL RAG
Sbjct: 356 RVG--IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAG 412
Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
L+ A F+E MP + + ALL AC+ KNT++ + + E++ + G +VI
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN 472
Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDD 559
I+A+ W+D+A++R M+E GV K P CSW+ I++
Sbjct: 473 IYASGGRWNDAARVRKKMKESGVKKEPACSWVEIEN 508
Score = 198 bits (504), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 196/376 (52%), Gaps = 20/376 (5%)
Query: 29 SLLKKCPSTKTVQQ---IHTQMLINFIQKP----NFLLIRIIDLKDFNYASLLFHQISRP 81
+LLKKC K + Q +H +L + + N LL A +F ++ +
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
+ + +I G + + +L + QM R G P+ FT V + A G +
Sbjct: 125 DFVTWTTLISGYSQH-DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
H K G D + HV +L+ +Y R G +D A+ VFD + R+ VSWN++I+G+++
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
++A+ELF M + F P + S+ G+C G L GKWV +++K+ L + G+ L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303
Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
+DMY K G++ AR++FD + +DVV+WN+++TAYAQ+G EA+ F M+ G+ P++
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363
Query: 322 ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFED 370
I+ + VL+AC+ G LD G + + G+ + + G ++ AL+ E+
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423
Query: 371 MPVTNEVS-WNAMISA 385
MP+ + W A+++A
Sbjct: 424 MPIEPTAAIWKALLNA 439
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 180/573 (31%), Positives = 294/573 (51%), Gaps = 53/573 (9%)
Query: 3 LRAKAYSRHLAFTELNDPSLLREKLL--SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLI 60
+++ S L EL+ S L +L P +T++ +H+++++ ++ + L +
Sbjct: 19 FQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGV 78
Query: 61 RII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLK 116
+++ LKD A +F +I N NVMIR Y +K++ M ++
Sbjct: 79 KLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF-YGEGVKVFGTMCGCNVR 137
Query: 117 PDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176
PD++T+P V +C+ + G +H S K+GL V + L++MY +CG L AR V
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197
Query: 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236
DE+ RD+VSWNS++ GY++ +A+E+ M + D T+ S+L +
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA------- 250
Query: 237 VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAY 296
V +N M + DM+ K G K +V+WN MI Y
Sbjct: 251 -----VSNTTTENVMYVK--------DMFFKMG-------------KKSLVSWNVMIGVY 284
Query: 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDI 356
+N + EA+ L++RM+ G PD +++ VL AC AL LGK + Y ++ L ++
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 344
Query: 357 F-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405
CG ++ A VFE+M + VSW AMISA F+GR +A+ LF ++
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404
Query: 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465
G P+ + F+ L+AC HAGL++EGR F LM+ + + P+ EH +CMVDL RAG +
Sbjct: 405 GLV--PDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462
Query: 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525
EA+ F++ M + +E V GALLGAC+ +TD+ L ++ SG YV+ S I+
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522
Query: 526 ANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
A W++ +R +M+ KG+ K PG S + ++
Sbjct: 523 AKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 179/559 (32%), Positives = 289/559 (51%), Gaps = 21/559 (3%)
Query: 21 SLLREKLLSLLKK----CPSTKTVQQIHTQMLINFIQKP-----NFLLIRIIDLKDFNYA 71
SLL L LL K S + + +H +++ P N+L+ L A
Sbjct: 2 SLLSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESA 61
Query: 72 SLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN 131
L+ N ++ +I GL +S +L +++M+R G+ P++FT+P F + A+
Sbjct: 62 RLVLRLTPARNVVSWTSLISGLAQNGH-FSTALVEFFEMRREGVVPNDFTFPCAFKAVAS 120
Query: 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191
L G +H+ K G D V S MY + D ARK+FDEI ER+L +WN+
Sbjct: 121 LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAF 180
Query: 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM 251
IS G +EA+E F R + P+ IT + L +C D L LG + G V+++
Sbjct: 181 ISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGF 240
Query: 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
D + + + LID YGKC + + +F M K+ V+W +++ AY QN +A +L+ R
Sbjct: 241 DTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLR 300
Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGS 360
+ V + VLSACA + L+LG+ + +A + + IF CG
Sbjct: 301 SRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGC 360
Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
I+D+ + F++MP N V+ N++I A G+ AL LFE M+ G PN +TF+ +L
Sbjct: 361 IEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 420
Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
SAC AG V+ G ++FD M S++G+ P +EHYSC+VD+ RAG + A++F+++MP +
Sbjct: 421 SACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT 480
Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
V GAL AC+ + + L +++ +SGN+V+ S FA W ++ +R
Sbjct: 481 ISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 540
Query: 541 MREKGVSKTPGCSWIGIDD 559
++ G+ K G SWI + +
Sbjct: 541 LKGVGIKKGAGYSWITVKN 559
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 173/558 (31%), Positives = 293/558 (52%), Gaps = 27/558 (4%)
Query: 24 REKLLSLLKKCPS---TKTVQQIHTQML-----INFIQKPNFLLIRIIDLKDFNYASLLF 75
R+ L+S+L+ C + Q+H +L +N I N+L+ ++ A +F
Sbjct: 6 RQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLIT-SNYLIDMYCKCREPLMAYKVF 64
Query: 76 HQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135
+ N +++ ++ G SL L+ +M R G+ P+ FT+ +C L AL
Sbjct: 65 DSMPERNVVSWSALMSGHVLNGD-LKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNAL 123
Query: 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGY 195
G+ +H KIG + V +SL+ MY++CG+++ A KVF I +R L+SWN+MI+G+
Sbjct: 124 EKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGF 183
Query: 196 SKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253
GY +A++ FG M+E PDE TL S+L +C G + GK + GF+V++
Sbjct: 184 VHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHC 243
Query: 254 --NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311
+ + +L+D+Y KCG L AR+ FD + K +++W+++I YAQ G EA+ LF R
Sbjct: 244 PSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR 303
Query: 312 MKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ--RGLRHDIF---------CGS 360
++ D L ++ A L GK + A + GL + CG
Sbjct: 304 LQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGL 363
Query: 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL 420
+D+A K F +M + + +SW +I+ +G +++ +F M + P++V ++ VL
Sbjct: 364 VDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHN--IEPDEVCYLAVL 421
Query: 421 SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVD 480
SAC H+G++ EG LF + + G+ P+ EHY+C+VDL RAG L EA ++ MP K +
Sbjct: 422 SACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPN 481
Query: 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540
+ LL C+ + ++ + V ++LL I++ N NYV+ S ++ W++ R L
Sbjct: 482 VGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNAREL 541
Query: 541 MREKGVSKTPGCSWIGID 558
KG+ K G SW+ I+
Sbjct: 542 GNIKGLKKEAGMSWVEIE 559
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 254/473 (53%), Gaps = 13/473 (2%)
Query: 102 HSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161
+S +++ QM+ + P+ +TYP + +C L L G +HS + K + +V LI
Sbjct: 473 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 532
Query: 162 TMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221
MYA+ GKLD+A + +D+VSW +MI+GY++ + +A+ F +M + DE+
Sbjct: 533 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 592
Query: 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281
L + + +C L L G+ + + + +AL+ +Y +CG + + F+
Sbjct: 593 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652
Query: 282 VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341
D + WNA+++ + Q+G + EA+ +F RM G++ + T + A + + GK
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGK 712
Query: 342 WVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNG 390
V ++ G + CGSI DA K F ++ NEVSWNA+I+A + +G
Sbjct: 713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 772
Query: 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450
EAL F++M RPN VT +GVLSAC H GLVD+G F+ M+S +GL PK E
Sbjct: 773 FGSEALDSFDQMIHSN--VRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE 830
Query: 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510
HY C+VD+ RAG LS A +F++ MP K D +V LL AC KN ++ + LLE+
Sbjct: 831 HYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL 890
Query: 511 ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQS 563
E +S YV+ S ++A K WD R M+EKGV K PG SWI + + S
Sbjct: 891 EPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 943
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/483 (27%), Positives = 242/483 (50%), Gaps = 20/483 (4%)
Query: 27 LLSLLKKCPSTKTVQQIHTQML-INFIQKP---NFLLIRIIDLKDFNYASLLFHQISRPN 82
+LS KK S + +Q+H +L + F N L+ L + A +F +S+ +
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353
Query: 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVH 142
+N +I GL+ +++L+ +M GL+PD+ T + ++C+ L G +H
Sbjct: 354 AVTYNTLINGLSQCGYG-EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH 412
Query: 143 SSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202
+ K+G ++ + +L+ +YA+C +++A F E ++V WN M+ Y + +
Sbjct: 413 AYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR 472
Query: 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262
+ +F +M+ EE +P++ T S+L +C LGDL LG+ + ++K LN Y+ S LI
Sbjct: 473 NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLI 532
Query: 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI 322
DMY K G L A + KDVV+W MI Y Q ++A+ F +M G+ D++
Sbjct: 533 DMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEV 592
Query: 323 TLIGVLSACASIGALDLGKWVDKYASQRGLRHDI-----------FCGSIDDALKVFEDM 371
L +SACA + AL G+ + A G D+ CG I+++ FE
Sbjct: 593 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652
Query: 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE 431
+ ++WNA++S +G EAL +F RM++EG N+ TF + A + +
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG--IDNNNFTFGSAVKAASETANMKQ 710
Query: 432 GRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491
G+++ +++ + G ++E + ++ +YA+ G +S+A + K +E+ A++ A
Sbjct: 711 GKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAY 768
Query: 492 QKQ 494
K
Sbjct: 769 SKH 771
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/514 (25%), Positives = 240/514 (46%), Gaps = 25/514 (4%)
Query: 40 VQQIHTQMLINFIQKPNFLLIRIIDLKDFN----YASLLFHQISRPNEYAFNVMIRGLTT 95
V+QIH ++L ++ + +IDL N A +F + + ++ MI GL+
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 265
Query: 96 AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155
+ + +++L+ M LG+ P + + V +C + +L G +H V K+G D +
Sbjct: 266 N-ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 324
Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
V ++L+++Y G L SA +F + +RD V++N++I+G S+ GY ++A+ELF RM +
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384
Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
PD TL S++ +C G L G+ + + K N + AL+++Y KC + A
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444
Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
F ++VV WN M+ AY + +F +M+ + P++ T +L C +G
Sbjct: 445 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
Query: 336 ALDLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMIS 384
L+LG+ + + + + + G +D A + + VSW MI+
Sbjct: 505 DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 564
Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
+AL F +M G R ++V +SAC + EG+++ S G
Sbjct: 565 GYTQYNFDDKALTTFRQMLDRG--IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-G 621
Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVM 504
+ +V LY+R G + E++ E+ E D I AL+ Q+ N + + RV
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQ-TEAGDNIAWNALVSGFQQSGNNEEALRVF 680
Query: 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMR 538
+ + E ++ N+ S + K ++A M+
Sbjct: 681 -VRMNREGIDNNNFTFGSAV----KAASETANMK 709
Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 192/377 (50%), Gaps = 21/377 (5%)
Query: 29 SLLKKCPSTKTVQ---QIHTQMLINFIQKPNFLLIRIID----LKDFNYASLLFHQISRP 81
S+LK C ++ QIH+Q++ Q ++ +ID L + A + + +
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554
Query: 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSV 141
+ ++ MI G T + +L + QM G++ D +CA L AL G +
Sbjct: 555 DVVSWTTMIAGYTQ-YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 142 HSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA 201
H+ G D ++L+T+Y+RCGK++ + F++ D ++WN+++SG+ + G
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 202 KEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSAL 261
+EA+ +F RM E + T S + + + ++ GK V + K D + +AL
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321
I MY KCG++ A + F + K+ V+WNA+I AY+++G +EA+ F++M ++ V P+
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793
Query: 322 ITLIGVLSACASIGALDLG-KWVDKYASQRGLR---HDIFC--------GSIDDALKVFE 369
+TL+GVLSAC+ IG +D G + + S+ GL C G + A + +
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853
Query: 370 DMPVT-NEVSWNAMISA 385
+MP+ + + W ++SA
Sbjct: 854 EMPIKPDALVWRTLLSA 870
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 195/398 (48%), Gaps = 28/398 (7%)
Query: 108 YQMKRL------GLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSL 160
+Q KR+ G++P++ T ++ C +L+ G +HS + K+GLD + +S L
Sbjct: 67 FQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKL 126
Query: 161 ITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220
Y G L A KVFDE+ ER + +WN MI + E LF RM E P+E
Sbjct: 127 FDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNE 186
Query: 221 ITLVSVLGSC--GDLG-DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277
T VL +C G + D+V + + ++ + + + + LID+Y + G + ARRV
Sbjct: 187 GTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRV 244
Query: 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337
FD + KD +W AMI+ ++N EAI LF M G+ P VLSAC I +L
Sbjct: 245 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 304
Query: 338 DLGKWVDKYASQRGLRHDIFC-----------GSIDDALKVFEDMPVTNEVSWNAMISAL 386
++G+ + + G D + G++ A +F +M + V++N +I+ L
Sbjct: 305 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 364
Query: 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446
+ G +A+ LF+RM +G P+ T ++ AC G + G++L ++ G
Sbjct: 365 SQCGYGEKAMELFKRMHLDG--LEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFA 421
Query: 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVL 484
++ +++LYA+ + A D+ + +V+ +VL
Sbjct: 422 SNNKIEGALLNLYAKCADIETALDYF--LETEVENVVL 457
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 277/523 (52%), Gaps = 21/523 (4%)
Query: 51 FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQK---YSHSLKLY 107
F+ N LL +++ + A +LF +I + FN +I G ++K Y+ S+ L+
Sbjct: 183 FLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITG----YEKDGLYTESIHLF 238
Query: 108 YQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARC 167
+M++ G +P +FT+ V + L G +H+ G D V + ++ Y++
Sbjct: 239 LKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKH 298
Query: 168 GKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227
++ R +FDE+ E D VS+N +IS YS+ + ++ F M+ F ++L
Sbjct: 299 DRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATML 358
Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV 287
+L L +G+ + + D ++G++L+DMY KC A +F ++ + V
Sbjct: 359 SIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTV 418
Query: 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347
+W A+I+ Y Q GL + LF +M+ + + D+ T VL A AS +L LGK + +
Sbjct: 419 SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFI 478
Query: 348 SQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396
+ G ++F CGSI DA++VFE+MP N VSWNA+ISA A NG A+
Sbjct: 479 IRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAI 538
Query: 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456
F +M + G +P+ V+ +GVL+AC H G V++G F MS +G+ PK +HY+CM+
Sbjct: 539 GAFAKMIESG--LQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACML 596
Query: 457 DLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES-SNS 515
DL R G +EA ++ MP + DEI+ ++L AC+ KN +++R + L +E ++
Sbjct: 597 DLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDA 656
Query: 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
YV S I+A W+ ++ MRE+G+ K P SW+ ++
Sbjct: 657 AAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVN 699
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 194/406 (47%), Gaps = 19/406 (4%)
Query: 100 YSHSLKLYYQMKRLG--LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH-- 155
+ + KL+ QM R PD+ T+ + C + + N VH+ K+G D +
Sbjct: 126 FDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLT 185
Query: 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEE 215
VS+ L+ Y +LD A +F+EI E+D V++N++I+GY K G E++ LF +MR+
Sbjct: 186 VSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245
Query: 216 FLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275
P + T VL + L D LG+ + V + +G+ ++D Y K ++ R
Sbjct: 246 HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305
Query: 276 RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335
+FD M D V++N +I++Y+Q ++ F M+ G + +LS A++
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS 365
Query: 336 ALDLGKWVDKY---ASQRGLRH------DIF--CGSIDDALKVFEDMPVTNEVSWNAMIS 384
+L +G+ + A+ + H D++ C ++A +F+ +P VSW A+IS
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425
Query: 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444
G L LF +M G R + TF VL A + G++L + S G
Sbjct: 426 GYVQKGLHGAGLKLFTKM--RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRS-G 482
Query: 445 LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGA 490
+ S +VD+YA+ G + +A E MP++ + + AL+ A
Sbjct: 483 NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISA 527
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 177/401 (44%), Gaps = 53/401 (13%)
Query: 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200
V + + K G D D S+ ++ R G++ +ARKV+DE+ ++ VS N+MISG+ K G
Sbjct: 35 VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94
Query: 201 AKEAVELFGRM----------------REEEF-----------------LPDEITLVSVL 227
A +LF M R F LPD +T ++L
Sbjct: 95 VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154
Query: 228 GSCGDLGDLVLGKWVEGFVVKNKMDLNFYM--GSALIDMYGKCGALVPARRVFDAMVNKD 285
C D V F VK D N ++ + L+ Y + L A +F+ + KD
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214
Query: 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345
VT+N +IT Y ++GL E+I LF +M+ +G P T GVL A + LG+ +
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274
Query: 346 YASQRGLRHDIFCGS-----------IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394
+ G D G+ + + +F++MP + VS+N +IS+ + +E
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYS-QADQYE 333
Query: 395 ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLF--DLMSSSFGLIPKSEHY 452
A L F R + G R N F +LS + + GR+L L++++ ++
Sbjct: 334 ASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVG--- 389
Query: 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493
+ +VD+YA+ EA + +P++ + G QK
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQK 430
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 280/541 (51%), Gaps = 21/541 (3%)
Query: 41 QQIHTQMLINFIQKPNFLLIRIIDL----KDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96
+ +H ++ + F+ +D+ +YA+ +F ++ + +N M+ G +
Sbjct: 72 EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131
Query: 97 WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV 156
+ L+ +M+ + PD+ T + S + +L ++H+ ++G+D V
Sbjct: 132 GHT-DKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTV 190
Query: 157 SHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREE 214
+++ I+ Y +CG LDSA+ VF+ I +R +VSWNSM YS G A +A L+ M E
Sbjct: 191 ANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLRE 250
Query: 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274
EF PD T +++ SC + L G+ + + D + + I MY K A
Sbjct: 251 EFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSA 310
Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
R +FD M ++ V+W MI+ YA+ G +EA+ LF+ M +G PD +TL+ ++S C
Sbjct: 311 RLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKF 370
Query: 335 GALDLGKWVDKYASQRGLRHDIF------------CGSIDDALKVFEDMPVTNEVSWNAM 382
G+L+ GKW+D A G + D CGSI +A +F++ P V+W M
Sbjct: 371 GSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTM 430
Query: 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442
I+ A NG EAL LF +M +PN +TF+ VL AC H+G +++G F +M
Sbjct: 431 IAGYALNGIFLEALKLFSKMIDLD--YKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQV 488
Query: 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502
+ + P +HYSCMVDL R G L EA + + M K D + GALL AC+ +N ++++
Sbjct: 489 YNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548
Query: 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQ 562
+ L +E + YV + I+A MWD A++R++M+++ + K PG S I ++
Sbjct: 549 AAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNH 608
Query: 563 S 563
S
Sbjct: 609 S 609
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 200/392 (51%), Gaps = 19/392 (4%)
Query: 103 SLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162
SL L+ +MKR G +P+NFT+PFV +CA L + VH+ + K D V + +
Sbjct: 36 SLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVD 95
Query: 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT 222
M+ +C +D A KVF+ + ERD +WN+M+SG+ + G+ +A LF MR E PD +T
Sbjct: 96 MFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVT 155
Query: 223 LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282
+++++ S L L + + ++ +D+ + + I YGKCG L A+ VF+A+
Sbjct: 156 VMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAID 215
Query: 283 NKD--VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340
D VV+WN+M AY+ G + +A L+ M PD T I + ++C + L G
Sbjct: 216 RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQG 275
Query: 341 KWVDKYASQRGLRHDI---------FCGSID--DALKVFEDMPVTNEVSWNAMISALAFN 389
+ + +A G DI + S D A +F+ M VSW MIS A
Sbjct: 276 RLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEK 335
Query: 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449
G EAL LF M K G +P+ VT + ++S C G ++ G+ + D + +G +
Sbjct: 336 GDMDEALALFHAMIKSG--EKPDLVTLLSLISGCGKFGSLETGKWI-DARADIYG-CKRD 391
Query: 450 EHYSC--MVDLYARAGHLSEAWDFVERMPEKV 479
C ++D+Y++ G + EA D + PEK
Sbjct: 392 NVMICNALIDMYSKCGSIHEARDIFDNTPEKT 423
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 159/353 (45%), Gaps = 48/353 (13%)
Query: 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246
+WN I E++ LF M+ F P+ T V +C L D+ + V +
Sbjct: 19 AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 78
Query: 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306
+K+ + ++G+A +DM+ KC ++ A +VF+ M +D TWNAM++ + Q+G +++A
Sbjct: 79 IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAF 138
Query: 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF--------- 357
LF M+ + PD +T++ ++ + + +L L + + + G+ +
Sbjct: 139 SLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTY 198
Query: 358 --CGSIDDALKVFE--DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413
CG +D A VFE D VSWN+M A + G A +A L+ M +E +P+
Sbjct: 199 GKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLRE--EFKPDL 256
Query: 414 VTFIGVLSACVHAGLVDEGRRL------------FDLMSSSFGLIPKSE----------- 450
TFI + ++C + + +GR + + +++ + KSE
Sbjct: 257 STFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDI 316
Query: 451 -------HYSCMVDLYARAGHLSEAWDFVERM---PEKVDEIVLGALLGACQK 493
++ M+ YA G + EA M EK D + L +L+ C K
Sbjct: 317 MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 275 RRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334
RR++ V WN I E+++LF MK G P+ T V ACA +
Sbjct: 6 RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65
Query: 335 GALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMI 383
+ + V + + D+F C S+D A KVFE MP + +WNAM+
Sbjct: 66 ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 125
Query: 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVT 415
S +G +A LF M R N++T
Sbjct: 126 SGFCQSGHTDKAFSLFREM-------RLNEIT 150
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 299 bits (766), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 176/515 (34%), Positives = 290/515 (56%), Gaps = 18/515 (3%)
Query: 56 NFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115
N LL D + +F +I++ N ++ MI + +L+ + +M + G+
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRG-EFSEKALRSFSEMIKSGI 299
Query: 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYARCGKLDSAR 174
+P+ T V SC + + G SVH + LD + + +S +L+ +YA CGKL
Sbjct: 300 EPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCE 359
Query: 175 KVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234
V + +R++V+WNS+IS Y+ G +A+ LF +M + PD TL S + +C + G
Sbjct: 360 TVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAG 419
Query: 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMIT 294
+ LGK + G V++ + F S LIDMY K G++ A VF+ + ++ VVTWN+M+
Sbjct: 420 LVPLGKQIHGHVIRTDVSDEFVQNS-LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLC 478
Query: 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354
++QNG S EAI LF+ M ++ + +++T + V+ AC+SIG+L+ GKWV GL+
Sbjct: 479 GFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK- 537
Query: 355 DIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403
D+F CG ++ A VF M + VSW++MI+A +GR A+ F +M
Sbjct: 538 DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMV 597
Query: 404 KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG 463
+ G +PN+V F+ VLSAC H+G V+EG+ F+LM S FG+ P SEH++C +DL +R+G
Sbjct: 598 ESG--TKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKS-FGVSPNSEHFACFIDLLSRSG 654
Query: 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523
L EA+ ++ MP D V G+L+ C+ + D+ + + L +I + ++G Y + S
Sbjct: 655 DLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSN 714
Query: 524 IFANLKMWDDSAKMRALMREKGVSKTPGCSWIGID 558
I+A W++ ++R+ M+ + K PG S I ID
Sbjct: 715 IYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEID 749
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 244/464 (52%), Gaps = 29/464 (6%)
Query: 26 KLLSLLKKCPSTKTVQQIHTQMLIN-FIQKPNFLLIRIIDLKDF----NYASLLFHQISR 80
+ + L + C S + V Q+H +L+ +++ + ++I+ F + + L+F
Sbjct: 3 QYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPY 62
Query: 81 PNEYAFNVMIRGLTTAW-QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA-LNHG 138
P+ + + V+I+ W ++ LY+++ + F +P V +CA L+ G
Sbjct: 63 PDSFMYGVLIK--CNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVG 120
Query: 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM 198
VH + K G+D+D + SL+ MY + G L A KVFD + RDLV+W++++S +
Sbjct: 121 GKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLEN 180
Query: 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258
G +A+ +F M ++ PD +T++SV+ C +LG L + + V G + + DL+ +
Sbjct: 181 GEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLC 240
Query: 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318
++L+ MY KCG L+ + R+F+ + K+ V+W AMI++Y + S +A+ F+ M +G+
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIE 300
Query: 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHD------------IFCGSIDDALK 366
P+ +TL VLS+C IG + GK V +A +R L + CG + D
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCET 360
Query: 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426
V + N V+WN++IS A G +AL LF +M + +P+ T +SAC +A
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQ--RIKPDAFTLASSISACENA 418
Query: 427 GLVDEGRRLFDLMSSSFGLIPKSEHY--SCMVDLYARAGHLSEA 468
GLV G+++ + + S+ + + ++D+Y+++G + A
Sbjct: 419 GLVPLGKQIHGHVIRT----DVSDEFVQNSLIDMYSKSGSVDSA 458
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 187/572 (32%), Positives = 287/572 (50%), Gaps = 65/572 (11%)
Query: 1 MLLRAKAYS-RHLAFTELNDPSLLREK---LLSLLKKCPSTKTVQQIHTQMLINFIQKPN 56
+++R +AY+ R L L S+ +LS ++ S +QQ H ML +
Sbjct: 12 IIIRPQAYNLRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDT 71
Query: 57 FLLIRII-------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQ 109
F +++ + K +YA + ++I PN + N +IR + +L ++ +
Sbjct: 72 FSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANS-STPEVALTVFRE 130
Query: 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169
M + PD +++ FV +CA G +H K GL D V ++L+ +Y R G
Sbjct: 131 MLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGY 190
Query: 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229
+ ARKV D + RD VSWNS++S Y + G EA LF M E
Sbjct: 191 FEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEE---------------- 234
Query: 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289
+N NF +I Y G + A+ VFD+M +DVV+W
Sbjct: 235 ------------------RNVESWNF-----MISGYAAAGLVKEAKEVFDSMPVRDVVSW 271
Query: 290 NAMITAYAQNGLSNEAIMLFNRM-KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348
NAM+TAYA G NE + +FN+M + PD TL+ VLSACAS+G+L G+WV Y
Sbjct: 272 NAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYID 331
Query: 349 QRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397
+ G+ + F CG ID AL+VF + +WN++IS L+ +G +AL
Sbjct: 332 KHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALE 391
Query: 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457
+F M EG +PN +TFIGVLSAC H G++D+ R+LF++MSS + + P EHY CMVD
Sbjct: 392 IFSEMVYEG--FKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVD 449
Query: 458 LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517
L R G + EA + V +P I+L +LLGAC++ + ++R+ LLE+ +S
Sbjct: 450 LLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSG 509
Query: 518 YVISSKIFANLKMWDDSAKMRALMREKGVSKT 549
Y S ++A+ W+ R MR + V+++
Sbjct: 510 YAQMSNLYASDGRWEKVIDGRRNMRAERVNRS 541
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/556 (30%), Positives = 292/556 (52%), Gaps = 23/556 (4%)
Query: 21 SLLREKLLSLLKKCPSTKT-VQQIH-----TQMLINFIQKPNFLLIRIIDLKDFNYASLL 74
+LL K + L+ K + QIH T L+N L+ + + +YA +
Sbjct: 13 TLLCPKRIKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKV 72
Query: 75 FHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA 134
F ++ + +N MI + + + L+LY QM ++PD+ T+ +C + L
Sbjct: 73 FDELPQRGVSVYNSMIV-VYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLV 131
Query: 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISG 194
L G +V G D V S++ +Y +CGK+D A +F ++ +RD++ W +M++G
Sbjct: 132 LEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTG 191
Query: 195 YSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254
+++ G + +AVE + M+ E F D + ++ +L + GDLGD +G+ V G++ + + +N
Sbjct: 192 FAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMN 251
Query: 255 FYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314
+ ++L+DMY K G + A RVF M+ K V+W ++I+ +AQNGL+N+A M+
Sbjct: 252 VVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQS 311
Query: 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDA 364
G PD +TL+GVL AC+ +G+L G+ V Y +R + + CG++ +
Sbjct: 312 LGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTATALMDMYSKCGALSSS 371
Query: 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424
++FE + + V WN MIS +G E + LF +M++ P+ TF +LSA
Sbjct: 372 REIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESN--IEPDHATFASLLSALS 429
Query: 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEI-- 482
H+GLV++G+ F +M + + + P +HY C++DL ARAG + EA D + EK+D
Sbjct: 430 HSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMIN--SEKLDNALP 487
Query: 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542
+ ALL C +N V +L++ + G + S FA W + AK+R LMR
Sbjct: 488 IWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMR 547
Query: 543 EKGVSKTPGCSWIGID 558
+ K PG S I ++
Sbjct: 548 NGAMEKVPGYSAIEVN 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,543,038
Number of Sequences: 539616
Number of extensions: 8483568
Number of successful extensions: 27303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 19611
Number of HSP's gapped (non-prelim): 1873
length of query: 566
length of database: 191,569,459
effective HSP length: 123
effective length of query: 443
effective length of database: 125,196,691
effective search space: 55462134113
effective search space used: 55462134113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)