Query 042098
Match_columns 566
No_of_seqs 566 out of 3786
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 02:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.6E-81 5.6E-86 670.0 62.4 550 5-562 171-738 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-73 3.2E-78 610.3 58.8 520 24-550 86-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 2.6E-73 5.7E-78 594.2 57.2 480 80-562 84-575 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.9E-66 4.1E-71 544.4 58.2 497 29-551 378-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.7E-64 1.7E-68 524.8 50.8 468 54-549 372-881 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.3E-63 1.4E-67 516.1 47.7 427 23-478 122-557 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-29 4.9E-34 276.2 57.6 516 18-547 326-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-29 5.5E-34 275.7 58.0 505 25-542 367-898 (899)
9 PRK11447 cellulose synthase su 99.9 3.7E-21 8.1E-26 211.8 52.9 473 64-546 74-702 (1157)
10 PRK11447 cellulose synthase su 99.9 6E-21 1.3E-25 210.1 54.3 401 127-543 277-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.6E-18 3.6E-23 182.5 54.8 513 21-546 78-708 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 6.1E-20 1.3E-24 172.1 32.6 382 118-533 115-508 (966)
13 PRK11788 tetratricopeptide rep 99.9 7.2E-20 1.6E-24 180.1 34.0 301 194-553 44-356 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 2.3E-19 5E-24 168.3 34.3 429 86-549 51-490 (966)
15 PRK09782 bacteriophage N4 rece 99.9 1.1E-17 2.4E-22 176.4 48.1 461 64-546 56-674 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 8.5E-18 1.9E-22 174.0 43.4 416 86-544 130-571 (615)
17 PRK10049 pgaA outer membrane p 99.9 4.5E-17 9.7E-22 171.7 47.5 395 124-544 20-456 (765)
18 PRK11788 tetratricopeptide rep 99.9 1.5E-18 3.1E-23 170.8 33.8 298 93-450 45-354 (389)
19 PRK15174 Vi polysaccharide exp 99.9 2.1E-17 4.5E-22 170.5 40.3 373 129-544 15-403 (656)
20 PRK15174 Vi polysaccharide exp 99.8 4.5E-17 9.8E-22 168.0 40.5 377 92-513 14-406 (656)
21 PRK14574 hmsH outer membrane p 99.8 8E-16 1.7E-20 159.1 46.9 439 55-518 35-521 (822)
22 TIGR00990 3a0801s09 mitochondr 99.8 6.2E-16 1.3E-20 160.2 44.7 423 59-516 134-577 (615)
23 PRK10049 pgaA outer membrane p 99.8 2.6E-16 5.6E-21 166.0 41.3 394 98-520 29-466 (765)
24 PRK14574 hmsH outer membrane p 99.8 6.5E-15 1.4E-19 152.4 48.6 428 85-543 37-512 (822)
25 KOG2002 TPR-containing nuclear 99.8 2.4E-15 5.2E-20 149.0 39.4 505 36-547 179-748 (1018)
26 KOG4422 Uncharacterized conser 99.8 2.3E-14 5E-19 129.4 41.0 308 25-353 120-465 (625)
27 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.3E-19 130.5 37.3 432 83-548 116-594 (625)
28 KOG2002 TPR-containing nuclear 99.7 1E-13 2.2E-18 137.7 40.9 475 58-544 168-709 (1018)
29 KOG0495 HAT repeat protein [RN 99.7 3.3E-12 7.1E-17 121.7 47.0 497 41-557 366-891 (913)
30 KOG2003 TPR repeat-containing 99.7 5.9E-14 1.3E-18 127.6 28.7 440 43-530 223-709 (840)
31 KOG0495 HAT repeat protein [RN 99.7 3.3E-11 7.1E-16 115.0 43.7 484 25-523 380-893 (913)
32 KOG1915 Cell cycle control pro 99.6 4.2E-11 9E-16 110.1 39.9 445 64-542 85-583 (677)
33 KOG0547 Translocase of outer m 99.6 5.3E-12 1.1E-16 116.3 33.1 398 89-542 121-564 (606)
34 PF13429 TPR_15: Tetratricopep 99.6 3.2E-15 6.9E-20 139.2 12.0 256 260-543 13-276 (280)
35 KOG2076 RNA polymerase III tra 99.6 4.7E-12 1E-16 125.2 32.6 321 166-545 151-513 (895)
36 KOG2076 RNA polymerase III tra 99.6 1.8E-10 3.9E-15 114.3 42.9 490 33-527 151-786 (895)
37 PRK10747 putative protoheme IX 99.6 1.2E-11 2.6E-16 120.6 34.0 286 198-541 97-387 (398)
38 KOG1915 Cell cycle control pro 99.6 3.4E-10 7.4E-15 104.2 39.9 468 41-541 93-622 (677)
39 KOG4318 Bicoid mRNA stability 99.6 4.3E-11 9.4E-16 118.0 36.1 366 183-557 202-608 (1088)
40 KOG2003 TPR repeat-containing 99.6 9.8E-12 2.1E-16 113.4 28.7 430 91-544 209-689 (840)
41 TIGR00540 hemY_coli hemY prote 99.6 1.6E-11 3.5E-16 120.4 32.3 287 197-509 96-398 (409)
42 PRK10747 putative protoheme IX 99.5 1.1E-11 2.5E-16 120.7 29.7 282 98-439 98-387 (398)
43 KOG1126 DNA-binding cell divis 99.5 1.7E-12 3.8E-17 124.3 23.0 284 201-548 335-624 (638)
44 KOG1155 Anaphase-promoting com 99.5 1.4E-10 2.9E-15 106.6 33.6 356 151-544 161-536 (559)
45 PF13429 TPR_15: Tetratricopep 99.5 1.5E-13 3.3E-18 127.9 12.7 256 192-509 15-276 (280)
46 COG2956 Predicted N-acetylgluc 99.5 1.3E-10 2.7E-15 101.9 28.3 296 198-553 48-356 (389)
47 TIGR00540 hemY_coli hemY prote 99.5 5.1E-11 1.1E-15 116.9 28.9 188 98-315 98-292 (409)
48 COG3071 HemY Uncharacterized e 99.5 3E-10 6.6E-15 102.7 30.5 280 198-510 97-390 (400)
49 KOG4318 Bicoid mRNA stability 99.5 8.1E-11 1.8E-15 116.2 27.9 439 80-543 22-556 (1088)
50 KOG1173 Anaphase-promoting com 99.4 4.5E-10 9.7E-15 105.9 30.2 265 252-544 241-518 (611)
51 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 98.2 31.3 287 98-442 98-390 (400)
52 KOG2047 mRNA splicing factor [ 99.4 1.6E-07 3.4E-12 90.3 44.8 463 64-538 114-717 (835)
53 KOG1155 Anaphase-promoting com 99.4 8E-09 1.7E-13 95.2 33.8 161 376-543 330-494 (559)
54 KOG3785 Uncharacterized conser 99.4 2.5E-09 5.4E-14 95.0 29.4 201 288-514 287-494 (557)
55 TIGR02521 type_IV_pilW type IV 99.4 3.5E-10 7.7E-15 102.6 24.6 166 376-544 65-232 (234)
56 KOG1126 DNA-binding cell divis 99.4 2.4E-10 5.2E-15 109.9 23.2 175 134-315 334-518 (638)
57 COG2956 Predicted N-acetylgluc 99.4 7E-09 1.5E-13 91.2 29.9 227 84-314 37-277 (389)
58 KOG2376 Signal recognition par 99.3 5.4E-08 1.2E-12 92.6 36.9 441 90-557 19-528 (652)
59 KOG1840 Kinesin light chain [C 99.3 2E-09 4.4E-14 104.6 27.9 235 259-542 203-477 (508)
60 KOG0547 Translocase of outer m 99.3 8.6E-09 1.9E-13 95.6 30.3 216 264-511 335-567 (606)
61 PF13041 PPR_2: PPR repeat fam 99.3 6.1E-12 1.3E-16 81.9 6.6 50 183-232 1-50 (50)
62 KOG1174 Anaphase-promoting com 99.3 1E-07 2.2E-12 86.8 33.0 282 233-521 209-511 (564)
63 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 79.8 6.8 50 374-425 1-50 (50)
64 KOG4162 Predicted calmodulin-b 99.3 2.1E-07 4.6E-12 91.5 37.3 393 148-546 317-785 (799)
65 KOG1129 TPR repeat-containing 99.2 6E-10 1.3E-14 97.8 16.9 160 382-546 296-460 (478)
66 KOG3785 Uncharacterized conser 99.2 4.6E-07 1E-11 80.9 34.4 441 90-549 29-495 (557)
67 COG3063 PilF Tfp pilus assembl 99.2 1.9E-09 4E-14 90.5 18.4 163 378-546 37-204 (250)
68 PRK12370 invasion protein regu 99.2 9E-09 1.9E-13 105.1 26.1 242 270-545 276-536 (553)
69 KOG1156 N-terminal acetyltrans 99.2 1.2E-06 2.5E-11 84.8 37.5 431 85-546 10-470 (700)
70 KOG1129 TPR repeat-containing 99.2 2.3E-09 5E-14 94.2 17.8 231 258-515 226-463 (478)
71 PRK11189 lipoprotein NlpI; Pro 99.2 1E-08 2.2E-13 95.7 23.4 217 267-514 38-269 (296)
72 TIGR02521 type_IV_pilW type IV 99.2 2E-08 4.4E-13 90.9 25.0 132 376-511 99-233 (234)
73 KOG4340 Uncharacterized conser 99.2 7.8E-08 1.7E-12 83.7 26.1 414 113-543 4-442 (459)
74 PF12569 NARP1: NMDA receptor- 99.2 3.7E-07 8.1E-12 90.2 34.2 288 125-443 10-335 (517)
75 PRK12370 invasion protein regu 99.2 1.2E-08 2.5E-13 104.3 24.1 234 285-543 255-501 (553)
76 KOG3617 WD40 and TPR repeat-co 99.1 3.2E-06 6.9E-11 83.8 37.7 236 54-313 724-994 (1416)
77 KOG1156 N-terminal acetyltrans 99.1 3.3E-06 7.2E-11 81.7 35.9 122 415-539 373-506 (700)
78 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-07 3.2E-12 87.9 26.0 200 256-486 65-275 (296)
79 KOG4162 Predicted calmodulin-b 99.0 4.5E-06 9.8E-11 82.5 35.0 407 98-516 298-789 (799)
80 KOG1173 Anaphase-promoting com 99.0 7.1E-07 1.5E-11 84.8 28.4 281 183-524 242-532 (611)
81 PF04733 Coatomer_E: Coatomer 99.0 3.1E-08 6.8E-13 91.0 19.3 224 259-515 39-270 (290)
82 KOG0985 Vesicle coat protein c 99.0 4.7E-05 1E-09 77.6 41.6 243 29-281 489-750 (1666)
83 KOG0624 dsRNA-activated protei 99.0 3.4E-06 7.4E-11 75.2 28.9 310 159-516 43-376 (504)
84 PF12569 NARP1: NMDA receptor- 99.0 1.5E-06 3.3E-11 86.0 30.0 123 416-541 197-331 (517)
85 COG3063 PilF Tfp pilus assembl 99.0 3.4E-07 7.4E-12 77.2 21.2 164 376-542 69-234 (250)
86 KOG2047 mRNA splicing factor [ 99.0 1.8E-05 3.8E-10 76.7 35.1 167 377-548 388-582 (835)
87 PRK04841 transcriptional regul 99.0 0.00012 2.6E-09 80.8 47.5 370 159-545 346-761 (903)
88 KOG0985 Vesicle coat protein c 98.9 7.3E-05 1.6E-09 76.2 39.2 158 359-541 1089-1246(1666)
89 KOG0548 Molecular co-chaperone 98.9 4.7E-06 1E-10 79.0 28.7 406 92-545 11-456 (539)
90 KOG1840 Kinesin light chain [C 98.9 3E-07 6.5E-12 89.7 21.1 231 119-349 199-478 (508)
91 KOG2376 Signal recognition par 98.9 2.5E-05 5.4E-10 75.0 33.0 424 41-507 32-517 (652)
92 KOG1174 Anaphase-promoting com 98.9 3.3E-05 7E-10 71.0 31.7 257 284-548 230-504 (564)
93 TIGR03302 OM_YfiO outer membra 98.9 3.8E-07 8.1E-12 82.7 19.5 167 375-545 32-233 (235)
94 KOG3616 Selective LIM binding 98.8 6.5E-06 1.4E-10 80.7 28.0 214 266-537 717-930 (1636)
95 PF04733 Coatomer_E: Coatomer 98.8 1.4E-07 3.1E-12 86.7 15.7 242 263-544 9-265 (290)
96 KOG1125 TPR repeat-containing 98.8 1.8E-07 3.9E-12 89.1 16.5 221 264-542 294-525 (579)
97 cd05804 StaR_like StaR_like; a 98.8 4.4E-05 9.4E-10 74.1 33.5 302 186-545 7-337 (355)
98 KOG3616 Selective LIM binding 98.8 8.2E-06 1.8E-10 80.0 27.1 111 420-542 798-909 (1636)
99 PRK10370 formate-dependent nit 98.8 1.2E-06 2.5E-11 76.1 17.9 152 382-550 22-179 (198)
100 KOG4340 Uncharacterized conser 98.7 2.5E-05 5.3E-10 68.6 24.9 278 57-343 15-332 (459)
101 KOG0548 Molecular co-chaperone 98.7 5.9E-05 1.3E-09 71.8 27.5 420 59-527 9-472 (539)
102 PRK15359 type III secretion sy 98.7 6.2E-07 1.3E-11 73.5 13.0 104 418-524 29-135 (144)
103 KOG3617 WD40 and TPR repeat-co 98.7 0.00014 2.9E-09 72.8 30.6 198 322-541 913-1171(1416)
104 cd05804 StaR_like StaR_like; a 98.6 0.00025 5.4E-09 68.9 32.9 297 155-510 7-336 (355)
105 PRK15179 Vi polysaccharide bio 98.6 8.5E-06 1.9E-10 83.9 22.3 132 375-513 85-220 (694)
106 PF12854 PPR_1: PPR repeat 98.6 6.4E-08 1.4E-12 56.3 4.1 32 149-180 2-33 (34)
107 PRK15359 type III secretion sy 98.6 1.7E-06 3.8E-11 70.9 13.7 109 434-547 14-124 (144)
108 KOG3060 Uncharacterized conser 98.6 7.1E-06 1.5E-10 70.3 17.0 162 379-546 55-222 (289)
109 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.4E-12 55.3 4.4 32 444-475 2-33 (34)
110 PRK04841 transcriptional regul 98.6 0.00023 5E-09 78.5 33.9 333 163-513 383-763 (903)
111 KOG1127 TPR repeat-containing 98.5 0.00035 7.6E-09 71.5 30.4 429 98-541 472-993 (1238)
112 COG4783 Putative Zn-dependent 98.5 3.9E-05 8.5E-10 72.3 21.4 174 359-540 251-433 (484)
113 KOG1070 rRNA processing protei 98.5 3.3E-05 7.1E-10 81.3 21.8 164 378-547 1499-1666(1710)
114 KOG3081 Vesicle coat complex C 98.4 0.00022 4.8E-09 61.9 22.4 126 383-515 144-276 (299)
115 COG5010 TadD Flp pilus assembl 98.4 3.1E-05 6.7E-10 67.1 17.4 155 380-539 70-226 (257)
116 COG5010 TadD Flp pilus assembl 98.4 3E-05 6.6E-10 67.1 17.2 135 410-546 63-199 (257)
117 TIGR03302 OM_YfiO outer membra 98.4 5.6E-05 1.2E-09 68.4 20.1 186 284-512 31-234 (235)
118 TIGR02552 LcrH_SycD type III s 98.4 4.5E-06 9.8E-11 68.1 11.6 93 452-544 20-114 (135)
119 PLN02789 farnesyltranstransfer 98.4 0.00029 6.4E-09 65.9 24.8 163 375-542 105-300 (320)
120 KOG0624 dsRNA-activated protei 98.4 0.0015 3.2E-08 58.9 29.1 208 89-323 44-258 (504)
121 KOG1125 TPR repeat-containing 98.4 3.8E-05 8.2E-10 73.8 18.7 85 230-315 295-382 (579)
122 KOG1128 Uncharacterized conser 98.4 3.9E-05 8.5E-10 75.7 18.9 219 252-510 395-616 (777)
123 KOG3081 Vesicle coat complex C 98.4 3.9E-05 8.4E-10 66.4 16.6 222 51-281 40-268 (299)
124 KOG1127 TPR repeat-containing 98.4 0.0018 3.9E-08 66.6 30.8 265 273-543 801-1103(1238)
125 PRK10370 formate-dependent nit 98.3 2.6E-05 5.7E-10 67.7 15.3 127 389-521 52-184 (198)
126 PF09976 TPR_21: Tetratricopep 98.3 4.4E-05 9.5E-10 62.9 15.3 128 378-507 14-144 (145)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.9E-10 75.3 14.1 122 416-542 172-295 (395)
128 KOG1070 rRNA processing protei 98.3 0.00039 8.5E-09 73.7 24.1 228 286-541 1458-1697(1710)
129 PLN02789 farnesyltranstransfer 98.3 0.00039 8.4E-09 65.1 22.3 165 376-546 71-252 (320)
130 PRK15363 pathogenicity island 98.3 1.1E-05 2.4E-10 64.9 10.4 97 449-545 35-133 (157)
131 KOG1914 mRNA cleavage and poly 98.3 0.0048 1E-07 59.3 33.1 148 392-543 347-500 (656)
132 PRK14720 transcript cleavage f 98.3 0.00027 5.9E-09 73.9 22.9 214 254-526 30-268 (906)
133 KOG2053 Mitochondrial inherita 98.2 0.0084 1.8E-07 61.3 39.3 421 98-549 23-507 (932)
134 KOG1128 Uncharacterized conser 98.2 6.6E-05 1.4E-09 74.1 17.0 163 377-546 425-618 (777)
135 PF09976 TPR_21: Tetratricopep 98.2 4.7E-05 1E-09 62.7 13.7 126 414-541 13-144 (145)
136 COG4783 Putative Zn-dependent 98.2 0.00083 1.8E-08 63.7 22.8 231 27-281 209-451 (484)
137 PRK15179 Vi polysaccharide bio 98.2 0.00065 1.4E-08 70.4 23.6 143 318-488 83-229 (694)
138 TIGR02552 LcrH_SycD type III s 98.2 7.3E-05 1.6E-09 60.9 13.7 115 398-518 5-122 (135)
139 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.2E-11 50.0 4.1 35 186-220 1-35 (35)
140 TIGR00756 PPR pentatricopeptid 98.1 4.3E-06 9.4E-11 49.5 4.4 35 84-119 1-35 (35)
141 TIGR02795 tol_pal_ybgF tol-pal 98.1 4E-05 8.6E-10 60.8 11.2 91 454-544 7-105 (119)
142 PF12895 Apc3: Anaphase-promot 98.1 3.5E-06 7.6E-11 61.9 4.4 78 462-540 2-83 (84)
143 PF13414 TPR_11: TPR repeat; P 98.1 1.3E-05 2.8E-10 56.3 6.8 65 480-544 2-67 (69)
144 cd00189 TPR Tetratricopeptide 98.1 3.4E-05 7.4E-10 58.2 9.7 94 452-545 3-98 (100)
145 PRK14720 transcript cleavage f 98.1 0.0017 3.7E-08 68.1 24.4 78 225-315 121-198 (906)
146 PF13812 PPR_3: Pentatricopept 98.1 6.3E-06 1.4E-10 48.4 4.2 33 186-218 2-34 (34)
147 PF13812 PPR_3: Pentatricopept 98.1 8.8E-06 1.9E-10 47.7 4.5 33 287-319 2-34 (34)
148 PF13432 TPR_16: Tetratricopep 98.0 1.2E-05 2.6E-10 55.7 5.7 60 487-546 3-62 (65)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00016 3.4E-09 57.3 12.0 106 415-520 4-115 (119)
150 KOG0553 TPR repeat-containing 98.0 0.00047 1E-08 61.2 15.2 108 422-532 90-200 (304)
151 PF07079 DUF1347: Protein of u 97.9 0.018 4E-07 54.3 34.4 245 64-315 18-327 (549)
152 KOG2053 Mitochondrial inherita 97.9 0.034 7.3E-07 57.1 40.4 207 43-253 32-259 (932)
153 KOG3060 Uncharacterized conser 97.9 0.001 2.2E-08 57.4 15.6 154 389-545 25-184 (289)
154 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00047 1E-08 65.9 14.9 121 159-281 174-294 (395)
155 PLN03088 SGT1, suppressor of 97.9 0.00014 2.9E-09 69.8 11.5 106 420-528 9-117 (356)
156 COG4235 Cytochrome c biogenesi 97.9 0.00026 5.6E-09 63.2 12.0 108 448-555 155-267 (287)
157 PF05843 Suf: Suppressor of fo 97.8 0.0011 2.5E-08 61.2 16.1 135 377-516 2-142 (280)
158 PF14559 TPR_19: Tetratricopep 97.8 4E-05 8.7E-10 53.6 4.9 55 492-546 2-56 (68)
159 PRK02603 photosystem I assembl 97.8 0.00036 7.8E-09 59.4 11.4 96 451-546 37-151 (172)
160 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.4E-10 44.3 3.2 31 186-216 1-31 (31)
161 PRK10153 DNA-binding transcrip 97.8 0.0021 4.5E-08 64.6 17.8 140 373-516 334-488 (517)
162 PF13371 TPR_9: Tetratricopept 97.7 0.00011 2.5E-09 52.2 6.6 60 488-547 2-61 (73)
163 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 43.2 3.6 31 84-115 1-31 (31)
164 PLN03088 SGT1, suppressor of 97.7 0.00072 1.5E-08 64.9 13.3 102 381-488 7-110 (356)
165 KOG2041 WD40 repeat protein [G 97.7 0.073 1.6E-06 53.1 28.2 175 116-310 689-876 (1189)
166 KOG1914 mRNA cleavage and poly 97.7 0.06 1.3E-06 52.1 38.2 159 376-539 366-534 (656)
167 PF08579 RPM2: Mitochondrial r 97.7 0.00067 1.5E-08 50.7 9.6 80 86-166 28-116 (120)
168 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.7E-09 49.8 6.1 61 455-515 3-65 (65)
169 CHL00033 ycf3 photosystem I as 97.6 0.00073 1.6E-08 57.3 10.8 93 449-541 35-139 (168)
170 PRK10153 DNA-binding transcrip 97.6 0.0037 8.1E-08 62.7 17.2 136 409-548 333-486 (517)
171 PRK02603 photosystem I assembl 97.6 0.002 4.4E-08 54.8 13.3 130 375-530 34-166 (172)
172 cd00189 TPR Tetratricopeptide 97.6 0.00095 2.1E-08 50.0 10.1 91 379-474 3-93 (100)
173 COG4700 Uncharacterized protei 97.6 0.012 2.6E-07 48.5 16.1 133 409-543 85-221 (251)
174 KOG0553 TPR repeat-containing 97.6 0.00031 6.8E-09 62.3 7.8 92 457-548 89-182 (304)
175 PRK15331 chaperone protein Sic 97.6 0.0008 1.7E-08 54.7 9.5 89 455-543 43-133 (165)
176 PF12895 Apc3: Anaphase-promot 97.5 0.00034 7.5E-09 51.2 6.9 81 389-474 2-83 (84)
177 PF14938 SNAP: Soluble NSF att 97.5 0.052 1.1E-06 50.5 22.7 100 377-476 156-264 (282)
178 PF04840 Vps16_C: Vps16, C-ter 97.5 0.099 2.1E-06 49.0 26.3 105 379-503 180-284 (319)
179 PRK10866 outer membrane biogen 97.5 0.026 5.7E-07 50.8 19.1 157 381-542 37-239 (243)
180 PRK10803 tol-pal system protei 97.4 0.0013 2.8E-08 59.6 10.4 99 414-515 144-251 (263)
181 PF08579 RPM2: Mitochondrial r 97.4 0.0033 7.2E-08 47.1 10.5 81 378-461 27-116 (120)
182 PF10037 MRP-S27: Mitochondria 97.4 0.0028 6.1E-08 61.0 13.0 120 215-334 61-186 (429)
183 KOG2280 Vacuolar assembly/sort 97.4 0.078 1.7E-06 53.5 22.7 302 58-399 443-793 (829)
184 PF05843 Suf: Suppressor of fo 97.4 0.0023 4.9E-08 59.2 11.9 129 414-544 2-136 (280)
185 PF14559 TPR_19: Tetratricopep 97.4 0.00018 3.9E-09 50.3 3.6 59 425-486 3-63 (68)
186 PF10037 MRP-S27: Mitochondria 97.4 0.0055 1.2E-07 59.0 14.2 125 317-462 62-186 (429)
187 PF06239 ECSIT: Evolutionarily 97.3 0.0011 2.4E-08 56.3 8.2 101 69-169 31-153 (228)
188 CHL00033 ycf3 photosystem I as 97.3 0.0056 1.2E-07 51.9 12.8 98 416-514 38-153 (168)
189 PF13431 TPR_17: Tetratricopep 97.3 0.0002 4.3E-09 41.5 2.6 33 504-536 2-34 (34)
190 KOG0550 Molecular chaperone (D 97.3 0.0094 2E-07 55.5 14.5 165 374-546 166-352 (486)
191 PF12688 TPR_5: Tetratrico pep 97.3 0.0035 7.5E-08 48.9 10.2 52 487-538 44-98 (120)
192 PF09205 DUF1955: Domain of un 97.3 0.044 9.5E-07 42.4 15.4 141 386-547 12-152 (161)
193 PRK15363 pathogenicity island 97.3 0.0087 1.9E-07 48.6 12.4 91 378-475 37-129 (157)
194 PF13525 YfiO: Outer membrane 97.3 0.025 5.5E-07 49.5 16.7 158 379-536 8-199 (203)
195 PRK10803 tol-pal system protei 97.3 0.0069 1.5E-07 55.0 13.4 93 452-544 146-246 (263)
196 PRK10866 outer membrane biogen 97.3 0.072 1.6E-06 48.0 19.8 194 261-475 38-238 (243)
197 COG4700 Uncharacterized protei 97.3 0.0089 1.9E-07 49.2 12.3 102 444-545 84-190 (251)
198 PF14938 SNAP: Soluble NSF att 97.3 0.018 3.9E-07 53.5 16.3 93 421-513 122-228 (282)
199 KOG1130 Predicted G-alpha GTPa 97.3 0.0018 4E-08 59.8 9.2 130 414-543 196-343 (639)
200 PF06239 ECSIT: Evolutionarily 97.2 0.011 2.3E-07 50.4 12.9 126 275-441 34-167 (228)
201 PF13414 TPR_11: TPR repeat; P 97.2 0.0011 2.4E-08 46.4 5.6 64 449-512 3-69 (69)
202 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.4E-08 41.3 4.7 42 482-523 2-43 (44)
203 KOG2041 WD40 repeat protein [G 97.1 0.39 8.3E-06 48.3 25.4 224 68-314 679-951 (1189)
204 PF12921 ATP13: Mitochondrial 97.1 0.01 2.2E-07 46.9 10.7 85 375-459 1-98 (126)
205 PF03704 BTAD: Bacterial trans 97.1 0.022 4.7E-07 46.9 13.3 70 482-551 63-137 (146)
206 KOG2796 Uncharacterized conser 97.1 0.046 9.9E-07 47.8 15.0 140 186-327 178-325 (366)
207 PF13424 TPR_12: Tetratricopep 97.0 0.0017 3.7E-08 46.7 5.7 62 482-543 6-74 (78)
208 PRK11619 lytic murein transgly 97.0 0.55 1.2E-05 48.9 31.0 261 262-541 106-372 (644)
209 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.004 8.6E-08 59.5 9.0 96 449-547 75-177 (453)
210 PF13371 TPR_9: Tetratricopept 96.9 0.0038 8.2E-08 44.2 6.6 65 457-521 3-69 (73)
211 COG3898 Uncharacterized membra 96.9 0.38 8.2E-06 44.9 27.1 275 64-353 96-395 (531)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.43 9.4E-06 45.4 28.9 134 376-514 397-535 (660)
213 PF12688 TPR_5: Tetratrico pep 96.9 0.024 5.2E-07 44.3 11.1 90 192-281 8-101 (120)
214 KOG2280 Vacuolar assembly/sort 96.8 0.68 1.5E-05 47.1 29.4 109 413-537 684-792 (829)
215 KOG0550 Molecular chaperone (D 96.8 0.19 4.1E-06 47.2 17.9 84 424-511 260-351 (486)
216 PF07079 DUF1347: Protein of u 96.8 0.5 1.1E-05 45.1 37.3 422 93-541 16-521 (549)
217 KOG1538 Uncharacterized conser 96.8 0.16 3.4E-06 50.4 17.8 224 290-544 602-846 (1081)
218 PF04840 Vps16_C: Vps16, C-ter 96.8 0.5 1.1E-05 44.4 25.6 104 259-398 181-284 (319)
219 KOG1538 Uncharacterized conser 96.6 0.54 1.2E-05 46.9 20.3 103 361-477 732-845 (1081)
220 KOG0543 FKBP-type peptidyl-pro 96.6 0.027 5.8E-07 52.7 11.0 95 450-544 258-355 (397)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.79 1.7E-05 43.8 25.7 127 415-543 399-530 (660)
222 KOG0543 FKBP-type peptidyl-pro 96.5 0.013 2.9E-07 54.6 8.3 67 481-547 257-323 (397)
223 PF13512 TPR_18: Tetratricopep 96.5 0.071 1.5E-06 42.6 11.1 90 456-545 17-129 (142)
224 COG1729 Uncharacterized protei 96.5 0.02 4.2E-07 50.8 8.8 98 415-516 144-250 (262)
225 PF13281 DUF4071: Domain of un 96.4 0.59 1.3E-05 44.4 18.7 129 382-515 185-339 (374)
226 COG1729 Uncharacterized protei 96.4 0.039 8.4E-07 49.0 10.1 105 378-483 144-250 (262)
227 PF13424 TPR_12: Tetratricopep 96.3 0.0064 1.4E-07 43.7 4.5 60 451-510 7-75 (78)
228 KOG1130 Predicted G-alpha GTPa 96.3 0.007 1.5E-07 56.2 5.4 132 378-510 197-344 (639)
229 COG4235 Cytochrome c biogenesi 96.3 0.17 3.7E-06 45.7 13.7 104 410-515 153-261 (287)
230 PF10300 DUF3808: Protein of u 96.2 0.4 8.7E-06 48.0 17.8 161 379-543 191-375 (468)
231 PRK11906 transcriptional regul 96.2 0.093 2E-06 50.5 12.6 142 392-538 274-430 (458)
232 PF03704 BTAD: Bacterial trans 96.1 0.083 1.8E-06 43.5 10.5 73 377-452 63-139 (146)
233 PF13525 YfiO: Outer membrane 96.1 0.87 1.9E-05 39.9 18.4 54 262-315 12-71 (203)
234 PF04184 ST7: ST7 protein; In 96.0 0.89 1.9E-05 44.2 17.9 98 417-514 263-379 (539)
235 COG3118 Thioredoxin domain-con 96.0 0.49 1.1E-05 42.7 15.2 118 422-543 143-264 (304)
236 COG3898 Uncharacterized membra 96.0 1.5 3.2E-05 41.3 27.4 118 384-509 271-391 (531)
237 COG3118 Thioredoxin domain-con 95.9 1.1 2.4E-05 40.6 16.7 169 364-536 122-293 (304)
238 COG4105 ComL DNA uptake lipopr 95.9 1.2 2.5E-05 39.6 19.5 164 378-543 37-232 (254)
239 KOG3941 Intermediate in Toll s 95.7 0.062 1.4E-06 47.5 8.1 114 68-181 50-186 (406)
240 PRK15331 chaperone protein Sic 95.7 0.42 9.1E-06 39.2 12.4 95 381-480 42-136 (165)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.11 2.4E-06 50.0 9.7 65 410-477 72-140 (453)
242 PF12921 ATP13: Mitochondrial 95.5 0.32 6.9E-06 38.5 10.8 52 373-425 49-100 (126)
243 PF13281 DUF4071: Domain of un 95.4 2.6 5.7E-05 40.2 20.8 77 88-165 146-228 (374)
244 PF02259 FAT: FAT domain; Int 95.3 3 6.4E-05 40.3 19.7 34 495-528 272-305 (352)
245 KOG3941 Intermediate in Toll s 95.2 0.91 2E-05 40.5 13.4 128 272-440 51-186 (406)
246 PF10345 Cohesin_load: Cohesin 95.2 4.9 0.00011 42.1 35.3 164 82-246 58-251 (608)
247 PF04053 Coatomer_WDAD: Coatom 95.2 1.1 2.3E-05 44.4 15.7 103 263-439 326-428 (443)
248 KOG2610 Uncharacterized conser 95.2 0.99 2.2E-05 41.4 13.9 158 389-551 116-283 (491)
249 PF07719 TPR_2: Tetratricopept 95.1 0.078 1.7E-06 30.5 5.0 32 483-514 3-34 (34)
250 KOG1941 Acetylcholine receptor 95.0 0.54 1.2E-05 43.5 11.9 163 378-541 85-272 (518)
251 PF00515 TPR_1: Tetratricopept 95.0 0.063 1.4E-06 30.9 4.3 32 482-513 2-33 (34)
252 smart00299 CLH Clathrin heavy 95.0 1.6 3.5E-05 35.4 16.1 127 379-527 10-137 (140)
253 COG4785 NlpI Lipoprotein NlpI, 94.8 2.3 5E-05 36.5 14.8 159 375-544 98-266 (297)
254 KOG1920 IkappaB kinase complex 94.8 7.7 0.00017 42.2 22.4 71 359-439 979-1052(1265)
255 PF10300 DUF3808: Protein of u 94.7 2.3 5E-05 42.7 17.0 116 390-509 247-375 (468)
256 KOG4555 TPR repeat-containing 94.7 0.36 7.9E-06 37.5 8.6 93 422-516 52-150 (175)
257 KOG1585 Protein required for f 94.6 2.6 5.6E-05 37.0 14.3 88 450-538 151-250 (308)
258 smart00299 CLH Clathrin heavy 94.5 2.2 4.7E-05 34.6 14.9 113 84-210 8-121 (140)
259 KOG4555 TPR repeat-containing 94.4 0.17 3.7E-06 39.2 6.2 91 457-547 51-147 (175)
260 PF04053 Coatomer_WDAD: Coatom 94.2 1 2.2E-05 44.6 13.0 151 98-280 275-427 (443)
261 COG0457 NrfG FOG: TPR repeat [ 93.9 4.2 9.1E-05 36.0 24.8 84 459-542 177-263 (291)
262 KOG2796 Uncharacterized conser 93.8 4.6 9.9E-05 35.9 24.2 135 377-514 178-319 (366)
263 KOG2610 Uncharacterized conser 93.8 2.5 5.4E-05 38.9 13.3 173 358-536 116-307 (491)
264 PF09613 HrpB1_HrpK: Bacterial 93.8 2.1 4.5E-05 35.1 11.7 85 424-511 21-107 (160)
265 KOG4234 TPR repeat-containing 93.8 0.26 5.7E-06 41.4 6.7 124 421-546 103-235 (271)
266 PF13176 TPR_7: Tetratricopept 93.7 0.15 3.2E-06 29.9 3.9 26 517-542 1-26 (36)
267 COG3629 DnrI DNA-binding trans 93.7 0.43 9.3E-06 43.3 8.5 59 451-509 155-215 (280)
268 PF13428 TPR_14: Tetratricopep 93.6 0.16 3.5E-06 31.4 4.2 34 515-548 1-34 (44)
269 PRK11906 transcriptional regul 93.6 7.8 0.00017 37.9 18.4 118 428-545 273-402 (458)
270 PF04184 ST7: ST7 protein; In 93.6 2.4 5.3E-05 41.4 13.6 54 487-540 265-320 (539)
271 PF13170 DUF4003: Protein of u 93.6 1.2 2.7E-05 41.3 11.6 122 100-224 78-221 (297)
272 PF13512 TPR_18: Tetratricopep 93.4 3.4 7.5E-05 33.2 14.9 119 382-516 16-134 (142)
273 COG2976 Uncharacterized protei 93.3 3.3 7.1E-05 35.1 12.3 130 376-512 54-190 (207)
274 COG2976 Uncharacterized protei 93.3 4.6 9.9E-05 34.3 13.9 91 454-545 94-189 (207)
275 PF13176 TPR_7: Tetratricopept 93.2 0.21 4.7E-06 29.2 4.1 28 483-510 1-28 (36)
276 PF09613 HrpB1_HrpK: Bacterial 93.2 0.54 1.2E-05 38.5 7.6 75 458-532 19-95 (160)
277 KOG1258 mRNA processing protei 93.2 10 0.00022 38.1 34.5 146 379-529 334-489 (577)
278 KOG2114 Vacuolar assembly/sort 93.1 13 0.00028 39.0 23.4 116 123-244 338-455 (933)
279 PF13181 TPR_8: Tetratricopept 93.1 0.26 5.6E-06 28.2 4.3 31 483-513 3-33 (34)
280 PRK09687 putative lyase; Provi 93.0 7.5 0.00016 35.9 27.4 160 152-313 35-201 (280)
281 TIGR02561 HrpB1_HrpK type III 93.0 0.43 9.4E-06 38.2 6.5 69 461-531 22-94 (153)
282 PF07035 Mic1: Colon cancer-as 92.9 4.1 8.8E-05 34.0 12.3 135 104-248 14-148 (167)
283 COG4105 ComL DNA uptake lipopr 92.7 7.1 0.00015 34.8 17.5 155 359-515 48-238 (254)
284 PF13170 DUF4003: Protein of u 92.5 6.5 0.00014 36.6 14.7 135 302-458 78-226 (297)
285 KOG1920 IkappaB kinase complex 92.4 20 0.00043 39.3 26.2 79 420-507 972-1052(1265)
286 KOG0890 Protein kinase of the 92.2 31 0.00067 41.1 25.5 158 127-292 1391-1552(2382)
287 PF07719 TPR_2: Tetratricopept 91.9 0.31 6.7E-06 27.9 3.6 30 516-545 2-31 (34)
288 PRK15180 Vi polysaccharide bio 91.6 3.5 7.6E-05 39.9 11.8 85 425-511 335-421 (831)
289 KOG1585 Protein required for f 91.4 9.7 0.00021 33.6 15.3 196 122-341 34-247 (308)
290 PF10602 RPN7: 26S proteasome 91.3 2.8 6.1E-05 35.6 10.2 90 450-539 37-137 (177)
291 COG3629 DnrI DNA-binding trans 91.1 2.8 6.1E-05 38.2 10.3 80 376-458 153-236 (280)
292 PF10602 RPN7: 26S proteasome 91.0 3.5 7.6E-05 35.0 10.4 97 377-477 37-141 (177)
293 PRK12798 chemotaxis protein; R 90.9 16 0.00034 35.3 19.2 180 359-542 126-322 (421)
294 COG4649 Uncharacterized protei 90.8 8.5 0.00018 32.0 11.7 130 376-509 59-195 (221)
295 PF00515 TPR_1: Tetratricopept 90.8 0.48 1E-05 27.1 3.6 30 516-545 2-31 (34)
296 KOG4570 Uncharacterized conser 90.5 1.4 3E-05 40.1 7.6 104 44-149 52-165 (418)
297 PF09205 DUF1955: Domain of un 90.4 7.4 0.00016 30.7 13.3 65 377-445 87-151 (161)
298 KOG1258 mRNA processing protei 90.2 22 0.00049 35.8 25.2 354 153-535 44-420 (577)
299 PF13174 TPR_6: Tetratricopept 89.8 0.8 1.7E-05 25.8 4.0 26 488-513 7-32 (33)
300 PF00637 Clathrin: Region in C 89.7 0.49 1.1E-05 38.7 4.1 83 90-180 14-96 (143)
301 COG3947 Response regulator con 89.6 16 0.00035 33.2 14.3 58 485-542 283-340 (361)
302 KOG4648 Uncharacterized conser 89.5 1.4 3.1E-05 40.5 7.0 91 423-516 107-200 (536)
303 TIGR02561 HrpB1_HrpK type III 89.5 7.6 0.00017 31.4 10.2 50 426-478 23-73 (153)
304 PF13374 TPR_10: Tetratricopep 89.5 0.99 2.1E-05 27.1 4.5 27 483-509 4-30 (42)
305 KOG4234 TPR repeat-containing 89.4 6.5 0.00014 33.5 10.1 90 383-478 102-197 (271)
306 PF02284 COX5A: Cytochrome c o 89.3 5.2 0.00011 29.8 8.4 63 392-458 26-88 (108)
307 PF07721 TPR_4: Tetratricopept 89.3 0.61 1.3E-05 24.8 2.9 24 516-539 2-25 (26)
308 PF13181 TPR_8: Tetratricopept 89.1 0.99 2.2E-05 25.7 4.1 29 516-544 2-30 (34)
309 PF13374 TPR_10: Tetratricopep 88.4 1 2.2E-05 27.1 4.0 28 516-543 3-30 (42)
310 KOG0276 Vesicle coat complex C 88.3 11 0.00024 37.9 12.5 146 359-539 600-745 (794)
311 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 5.5 0.00012 29.3 7.8 63 391-457 22-84 (103)
312 COG4455 ImpE Protein of avirul 87.9 2.3 5E-05 36.6 6.8 64 451-514 3-68 (273)
313 PF02259 FAT: FAT domain; Int 87.9 26 0.00057 33.6 18.5 68 479-546 144-215 (352)
314 PRK10941 hypothetical protein; 87.5 4.2 9.2E-05 37.1 8.8 63 483-545 183-245 (269)
315 PF07035 Mic1: Colon cancer-as 87.4 16 0.00034 30.6 15.6 56 259-314 93-148 (167)
316 KOG4648 Uncharacterized conser 87.4 1.5 3.3E-05 40.3 5.9 88 457-544 105-194 (536)
317 PF13174 TPR_6: Tetratricopept 87.1 0.81 1.8E-05 25.8 2.8 29 517-545 2-30 (33)
318 PF13431 TPR_17: Tetratricopep 87.0 0.87 1.9E-05 26.2 2.8 24 446-469 9-33 (34)
319 PF13929 mRNA_stabil: mRNA sta 86.7 25 0.00053 32.2 12.9 112 98-209 142-262 (292)
320 COG0457 NrfG FOG: TPR repeat [ 86.5 22 0.00047 31.2 29.1 201 287-513 60-268 (291)
321 TIGR03504 FimV_Cterm FimV C-te 86.4 1.5 3.3E-05 26.9 3.7 28 519-546 3-30 (44)
322 KOG2063 Vacuolar assembly/sort 86.2 48 0.001 35.9 16.6 127 288-425 506-638 (877)
323 PF04097 Nic96: Nup93/Nic96; 86.0 49 0.0011 34.8 23.3 220 294-541 266-531 (613)
324 PF08631 SPO22: Meiosis protei 86.0 29 0.00062 32.2 24.3 19 522-540 253-271 (278)
325 PF14853 Fis1_TPR_C: Fis1 C-te 85.6 3.1 6.6E-05 26.9 5.0 34 487-520 7-40 (53)
326 PF14561 TPR_20: Tetratricopep 85.5 3.7 8E-05 30.2 6.1 39 505-543 12-50 (90)
327 PF00637 Clathrin: Region in C 85.5 0.56 1.2E-05 38.3 2.1 85 124-211 12-96 (143)
328 KOG1941 Acetylcholine receptor 84.9 6.8 0.00015 36.6 8.6 156 388-543 18-190 (518)
329 PRK15180 Vi polysaccharide bio 84.9 42 0.0009 33.0 25.1 123 129-254 299-425 (831)
330 KOG2114 Vacuolar assembly/sort 84.8 58 0.0013 34.5 31.2 55 454-509 710-764 (933)
331 KOG1464 COP9 signalosome, subu 83.9 32 0.00069 30.9 14.9 208 166-390 39-286 (440)
332 PF11207 DUF2989: Protein of u 83.9 8.4 0.00018 33.0 8.2 75 459-535 117-198 (203)
333 smart00028 TPR Tetratricopepti 83.7 2.3 5E-05 23.0 3.7 25 518-542 4-28 (34)
334 PF06552 TOM20_plant: Plant sp 83.5 1.5 3.3E-05 36.5 3.6 60 482-548 70-140 (186)
335 PRK09687 putative lyase; Provi 83.4 38 0.00082 31.4 27.7 236 254-525 36-277 (280)
336 KOG0276 Vesicle coat complex C 83.0 30 0.00065 35.0 12.5 130 123-281 618-747 (794)
337 KOG0545 Aryl-hydrocarbon recep 82.8 4 8.7E-05 35.9 6.0 60 488-547 237-296 (329)
338 PHA02875 ankyrin repeat protei 82.8 53 0.0011 32.5 15.5 195 110-321 21-230 (413)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 82.5 10 0.00022 28.0 6.9 48 99-146 22-69 (103)
340 KOG1586 Protein required for f 82.3 35 0.00075 30.1 17.7 21 422-442 163-183 (288)
341 PF11207 DUF2989: Protein of u 82.1 13 0.00028 32.0 8.6 73 393-468 123-197 (203)
342 PF04097 Nic96: Nup93/Nic96; 81.5 46 0.001 35.0 14.5 88 383-477 265-355 (613)
343 KOG1308 Hsp70-interacting prot 80.6 0.96 2.1E-05 41.7 1.7 85 463-547 128-214 (377)
344 COG4649 Uncharacterized protei 80.5 33 0.00071 28.7 15.6 130 412-543 58-195 (221)
345 COG2909 MalT ATP-dependent tra 80.2 89 0.0019 33.5 26.2 165 374-540 495-684 (894)
346 smart00386 HAT HAT (Half-A-TPR 80.1 5 0.00011 22.2 4.2 30 495-524 1-30 (33)
347 smart00028 TPR Tetratricopepti 79.2 3.8 8.2E-05 22.1 3.6 31 482-512 2-32 (34)
348 COG4785 NlpI Lipoprotein NlpI, 78.6 2.2 4.9E-05 36.6 3.1 110 423-538 75-189 (297)
349 KOG4642 Chaperone-dependent E3 78.2 8.6 0.00019 33.8 6.4 115 423-540 20-142 (284)
350 TIGR02508 type_III_yscG type I 78.0 26 0.00057 26.1 8.0 86 134-223 20-105 (115)
351 KOG0890 Protein kinase of the 76.8 1.8E+02 0.004 35.2 28.7 66 479-546 1668-1733(2382)
352 PF13762 MNE1: Mitochondrial s 76.6 39 0.00085 27.4 10.9 80 157-236 42-131 (145)
353 PRK11619 lytic murein transgly 75.5 1.1E+02 0.0025 32.3 38.8 156 377-535 313-496 (644)
354 TIGR02508 type_III_yscG type I 75.3 32 0.00069 25.7 9.8 63 261-326 45-107 (115)
355 PF06552 TOM20_plant: Plant sp 74.8 11 0.00025 31.6 6.1 95 392-492 7-124 (186)
356 PF10579 Rapsyn_N: Rapsyn N-te 74.1 9.8 0.00021 26.9 4.7 45 426-470 19-64 (80)
357 PF08631 SPO22: Meiosis protei 73.9 75 0.0016 29.4 27.3 62 288-350 86-150 (278)
358 TIGR03504 FimV_Cterm FimV C-te 73.7 9.2 0.0002 23.6 4.1 25 382-406 5-29 (44)
359 PF02284 COX5A: Cytochrome c o 72.7 38 0.00082 25.4 9.5 55 467-521 28-85 (108)
360 PF12862 Apc5: Anaphase-promot 72.7 15 0.00033 27.2 6.0 53 491-543 8-69 (94)
361 KOG1586 Protein required for f 72.5 69 0.0015 28.4 14.5 92 454-545 118-225 (288)
362 PF13762 MNE1: Mitochondrial s 72.5 38 0.00082 27.5 8.4 82 85-167 41-128 (145)
363 KOG2066 Vacuolar assembly/sort 72.2 1.4E+02 0.003 31.7 27.0 73 129-203 366-441 (846)
364 PF07163 Pex26: Pex26 protein; 71.8 61 0.0013 29.6 10.2 88 383-473 90-182 (309)
365 PF08311 Mad3_BUB1_I: Mad3/BUB 71.3 39 0.00085 26.7 8.3 42 499-540 81-124 (126)
366 KOG4570 Uncharacterized conser 70.9 39 0.00084 31.3 8.9 102 148-250 58-165 (418)
367 PF09477 Type_III_YscG: Bacter 70.1 46 0.00099 25.3 8.8 82 131-215 18-99 (116)
368 KOG4077 Cytochrome c oxidase, 70.0 34 0.00074 26.8 7.2 60 394-457 67-126 (149)
369 COG1747 Uncharacterized N-term 69.7 1.3E+02 0.0027 30.2 20.6 161 288-478 68-234 (711)
370 PF09986 DUF2225: Uncharacteri 69.5 50 0.0011 29.1 9.4 63 485-547 122-197 (214)
371 COG0790 FOG: TPR repeat, SEL1 69.1 98 0.0021 28.8 20.3 150 390-548 91-270 (292)
372 KOG3364 Membrane protein invol 66.8 32 0.00069 27.4 6.6 73 446-518 29-108 (149)
373 PF10366 Vps39_1: Vacuolar sor 66.2 57 0.0012 25.0 8.4 27 378-404 41-67 (108)
374 KOG1550 Extracellular protein 66.2 1.7E+02 0.0037 30.4 23.1 79 464-545 454-539 (552)
375 PF10579 Rapsyn_N: Rapsyn N-te 66.0 17 0.00037 25.7 4.5 45 493-537 18-65 (80)
376 PF11846 DUF3366: Domain of un 65.9 25 0.00055 30.3 7.0 34 479-512 142-175 (193)
377 COG4976 Predicted methyltransf 65.7 14 0.0003 32.3 4.9 55 492-546 6-60 (287)
378 PRK13342 recombination factor 64.9 1.5E+02 0.0033 29.4 14.2 41 187-227 229-272 (413)
379 PF04190 DUF410: Protein of un 64.7 1.1E+02 0.0025 27.9 15.6 158 166-349 2-169 (260)
380 PF13929 mRNA_stabil: mRNA sta 64.3 1.2E+02 0.0026 28.0 16.2 98 409-506 160-263 (292)
381 KOG4507 Uncharacterized conser 63.5 20 0.00043 36.1 6.1 99 425-526 619-721 (886)
382 cd08819 CARD_MDA5_2 Caspase ac 63.4 54 0.0012 23.8 6.7 65 138-204 21-85 (88)
383 KOG0551 Hsp90 co-chaperone CNS 63.3 32 0.00068 32.1 6.9 89 451-539 83-177 (390)
384 COG4455 ImpE Protein of avirul 62.5 1.1E+02 0.0024 26.9 11.8 74 379-458 4-81 (273)
385 KOG0376 Serine-threonine phosp 61.2 6.5 0.00014 38.3 2.5 99 420-521 11-112 (476)
386 KOG3364 Membrane protein invol 61.0 85 0.0018 25.1 8.3 65 411-477 30-99 (149)
387 smart00777 Mad3_BUB1_I Mad3/BU 60.9 81 0.0018 24.9 8.1 40 500-539 82-123 (125)
388 KOG2066 Vacuolar assembly/sort 60.0 2.4E+02 0.0052 30.0 23.6 142 62-212 366-532 (846)
389 cd08819 CARD_MDA5_2 Caspase ac 60.0 65 0.0014 23.4 7.0 38 267-305 48-85 (88)
390 KOG3824 Huntingtin interacting 59.6 21 0.00045 32.7 5.1 48 492-539 127-174 (472)
391 PF04190 DUF410: Protein of un 59.4 1.4E+02 0.0031 27.2 17.1 110 64-185 2-121 (260)
392 PF04910 Tcf25: Transcriptiona 58.7 1.8E+02 0.0039 28.2 14.9 123 410-543 37-167 (360)
393 PF07163 Pex26: Pex26 protein; 57.9 90 0.002 28.5 8.6 57 88-147 88-146 (309)
394 KOG4507 Uncharacterized conser 56.6 59 0.0013 32.9 8.0 134 411-547 569-708 (886)
395 PF14863 Alkyl_sulf_dimr: Alky 55.9 67 0.0014 26.0 7.0 63 466-531 58-120 (141)
396 KOG1308 Hsp70-interacting prot 54.9 2.1 4.7E-05 39.5 -1.7 75 491-565 124-198 (377)
397 KOG4077 Cytochrome c oxidase, 54.8 65 0.0014 25.3 6.3 42 105-146 70-111 (149)
398 PF11848 DUF3368: Domain of un 54.7 52 0.0011 20.7 5.2 36 295-330 11-46 (48)
399 KOG2581 26S proteasome regulat 54.6 2E+02 0.0043 28.0 10.6 137 376-514 124-280 (493)
400 COG3947 Response regulator con 54.4 1.8E+02 0.0039 26.9 16.7 72 378-452 281-356 (361)
401 PF11848 DUF3368: Domain of un 54.2 43 0.00093 21.1 4.6 31 131-161 14-44 (48)
402 KOG0403 Neoplastic transformat 53.6 2.3E+02 0.005 27.9 19.2 301 123-442 218-611 (645)
403 cd00280 TRFH Telomeric Repeat 53.4 86 0.0019 26.6 7.3 19 422-440 120-138 (200)
404 KOG4814 Uncharacterized conser 52.8 1.7E+02 0.0038 30.2 10.5 85 460-544 365-457 (872)
405 COG2912 Uncharacterized conser 52.4 59 0.0013 29.6 6.8 58 487-544 187-244 (269)
406 cd00280 TRFH Telomeric Repeat 52.2 1.5E+02 0.0032 25.3 11.4 48 488-536 118-165 (200)
407 COG1747 Uncharacterized N-term 52.1 2.7E+02 0.0058 28.1 22.9 177 318-525 63-249 (711)
408 PF11846 DUF3366: Domain of un 51.9 54 0.0012 28.3 6.6 52 425-476 120-171 (193)
409 PHA02875 ankyrin repeat protei 51.7 1.8E+02 0.0039 28.7 11.1 206 128-354 8-228 (413)
410 PRK10564 maltose regulon perip 51.6 33 0.00071 31.7 5.1 39 377-417 258-296 (303)
411 PRK10564 maltose regulon perip 51.6 29 0.00063 32.0 4.8 39 187-225 259-297 (303)
412 PF09477 Type_III_YscG: Bacter 51.4 1.1E+02 0.0023 23.4 9.5 86 235-324 21-106 (116)
413 PF10366 Vps39_1: Vacuolar sor 51.3 1.1E+02 0.0024 23.4 8.1 27 288-314 41-67 (108)
414 PF14689 SPOB_a: Sensor_kinase 49.7 53 0.0012 22.0 4.8 30 412-441 22-51 (62)
415 KOG2422 Uncharacterized conser 49.5 2.5E+02 0.0054 28.8 10.9 22 418-439 289-310 (665)
416 TIGR02270 conserved hypothetic 48.8 2.8E+02 0.0061 27.4 25.4 57 254-311 160-216 (410)
417 KOG2396 HAT (Half-A-TPR) repea 48.2 3E+02 0.0066 27.7 32.0 92 379-475 463-556 (568)
418 PF07575 Nucleopor_Nup85: Nup8 47.7 2E+02 0.0044 30.0 11.0 32 298-329 507-538 (566)
419 PF09670 Cas_Cas02710: CRISPR- 47.6 2.8E+02 0.0061 27.1 12.8 55 385-442 140-198 (379)
420 COG0735 Fur Fe2+/Zn2+ uptake r 47.4 1E+02 0.0023 25.1 7.1 62 106-168 8-69 (145)
421 PF08424 NRDE-2: NRDE-2, neces 47.4 2.6E+02 0.0056 26.6 15.0 132 374-511 17-184 (321)
422 COG5191 Uncharacterized conser 46.8 38 0.00083 31.2 4.7 76 448-523 106-184 (435)
423 PF10255 Paf67: RNA polymerase 46.3 96 0.0021 30.3 7.7 28 514-541 163-190 (404)
424 COG5108 RPO41 Mitochondrial DN 46.2 1.3E+02 0.0028 31.2 8.5 49 381-429 33-81 (1117)
425 KOG4279 Serine/threonine prote 45.5 4.1E+02 0.0088 28.4 14.2 29 488-516 373-401 (1226)
426 PRK13342 recombination factor 45.4 3.2E+02 0.0069 27.1 18.0 47 379-427 230-279 (413)
427 PF11838 ERAP1_C: ERAP1-like C 45.3 2.7E+02 0.0058 26.3 17.7 110 429-538 146-260 (324)
428 KOG1550 Extracellular protein 45.1 3.8E+02 0.0082 27.9 22.6 178 68-252 228-429 (552)
429 KOG2908 26S proteasome regulat 44.7 2.8E+02 0.0061 26.3 9.8 52 458-509 84-143 (380)
430 KOG4642 Chaperone-dependent E3 44.6 2.3E+02 0.0051 25.4 8.9 114 359-476 24-144 (284)
431 PF12968 DUF3856: Domain of Un 44.1 1.5E+02 0.0033 23.1 8.6 58 484-541 58-126 (144)
432 KOG3807 Predicted membrane pro 44.0 2.2E+02 0.0047 26.8 9.0 123 392-528 232-359 (556)
433 PRK14956 DNA polymerase III su 43.6 2E+02 0.0043 29.1 9.5 38 118-155 247-284 (484)
434 PF04910 Tcf25: Transcriptiona 43.5 3.2E+02 0.0069 26.5 15.1 58 21-78 7-66 (360)
435 PF11663 Toxin_YhaV: Toxin wit 43.5 28 0.00061 27.6 3.0 33 297-331 106-138 (140)
436 cd08326 CARD_CASP9 Caspase act 43.0 86 0.0019 22.7 5.3 61 41-102 19-79 (84)
437 PF14853 Fis1_TPR_C: Fis1 C-te 42.8 92 0.002 20.2 5.4 34 382-419 7-40 (53)
438 PF13934 ELYS: Nuclear pore co 42.8 2.5E+02 0.0053 25.1 13.2 107 378-495 78-186 (226)
439 PF14689 SPOB_a: Sensor_kinase 42.5 44 0.00094 22.5 3.5 26 379-404 26-51 (62)
440 PF11817 Foie-gras_1: Foie gra 42.4 82 0.0018 28.5 6.4 22 454-475 183-204 (247)
441 KOG4521 Nuclear pore complex, 42.3 5.6E+02 0.012 29.0 15.1 149 386-538 930-1125(1480)
442 PF04090 RNA_pol_I_TF: RNA pol 42.0 2.3E+02 0.005 24.6 9.9 131 376-525 41-188 (199)
443 PF09454 Vps23_core: Vps23 cor 42.0 1E+02 0.0022 21.1 5.1 49 374-425 6-54 (65)
444 PF10516 SHNi-TPR: SHNi-TPR; 41.3 69 0.0015 19.0 3.7 28 516-543 2-29 (38)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 41.2 1.8E+02 0.0039 23.0 9.4 43 431-474 81-124 (126)
446 PF11817 Foie-gras_1: Foie gra 41.2 1.2E+02 0.0026 27.5 7.3 57 418-474 183-243 (247)
447 COG5159 RPN6 26S proteasome re 40.9 2.9E+02 0.0064 25.4 15.5 202 292-543 9-234 (421)
448 PRK13800 putative oxidoreducta 40.8 5.6E+02 0.012 28.7 26.4 239 73-334 625-865 (897)
449 COG1775 HgdB Benzoyl-CoA reduc 40.8 1.5E+02 0.0032 28.4 7.6 100 463-565 143-249 (379)
450 PHA02537 M terminase endonucle 39.7 1.8E+02 0.0039 25.9 7.7 104 387-514 94-211 (230)
451 COG4976 Predicted methyltransf 39.7 46 0.001 29.3 3.9 55 460-514 6-62 (287)
452 KOG1498 26S proteasome regulat 39.6 3.7E+02 0.0079 26.1 13.4 96 450-549 132-246 (439)
453 KOG0292 Vesicle coat complex C 39.5 71 0.0015 34.2 5.9 123 389-545 606-728 (1202)
454 PF07720 TPR_3: Tetratricopept 39.2 80 0.0017 18.4 4.8 17 521-537 7-23 (36)
455 smart00638 LPD_N Lipoprotein N 39.0 4.8E+02 0.01 27.3 22.5 65 80-150 307-371 (574)
456 COG0735 Fur Fe2+/Zn2+ uptake r 38.9 1.7E+02 0.0036 23.9 7.0 48 378-427 22-69 (145)
457 KOG0991 Replication factor C, 38.3 2.9E+02 0.0064 24.7 15.2 103 423-529 169-286 (333)
458 KOG1524 WD40 repeat-containing 37.3 2E+02 0.0043 29.0 8.1 53 451-506 575-627 (737)
459 COG5108 RPO41 Mitochondrial DN 36.5 2.3E+02 0.0051 29.5 8.7 48 124-171 33-82 (1117)
460 PF11838 ERAP1_C: ERAP1-like C 36.1 3.7E+02 0.0081 25.3 15.4 80 135-214 146-230 (324)
461 KOG4567 GTPase-activating prot 35.9 3.7E+02 0.0081 25.2 9.8 41 241-281 264-304 (370)
462 PF12926 MOZART2: Mitotic-spin 35.8 1.7E+02 0.0037 21.3 6.5 42 105-146 29-70 (88)
463 cd08332 CARD_CASP2 Caspase act 35.8 1.4E+02 0.0029 22.0 5.5 56 41-96 23-78 (90)
464 PF11663 Toxin_YhaV: Toxin wit 35.7 36 0.00078 27.0 2.5 33 387-423 106-138 (140)
465 PF04090 RNA_pol_I_TF: RNA pol 35.5 2.2E+02 0.0047 24.7 7.4 59 483-541 43-102 (199)
466 PF14561 TPR_20: Tetratricopep 35.3 1.8E+02 0.0039 21.3 7.7 49 482-530 23-73 (90)
467 PF11768 DUF3312: Protein of u 35.0 4.4E+02 0.0096 26.9 10.3 57 259-315 412-473 (545)
468 cd08326 CARD_CASP9 Caspase act 34.6 1.8E+02 0.0038 21.1 5.8 61 139-203 19-79 (84)
469 PRK11639 zinc uptake transcrip 34.2 1.9E+02 0.0041 24.3 6.9 40 190-229 30-69 (169)
470 PF11123 DNA_Packaging_2: DNA 34.2 1.5E+02 0.0033 20.6 4.9 47 496-542 12-72 (82)
471 smart00843 Ftsk_gamma This dom 34.0 90 0.0019 21.1 3.8 30 521-551 24-53 (63)
472 TIGR02270 conserved hypothetic 33.4 4.9E+02 0.011 25.8 25.5 233 90-347 45-278 (410)
473 PRK11639 zinc uptake transcrip 33.3 1.7E+02 0.0038 24.6 6.5 45 381-427 30-74 (169)
474 PF15469 Sec5: Exocyst complex 33.3 3E+02 0.0066 23.4 9.1 27 529-555 153-179 (182)
475 KOG2471 TPR repeat-containing 33.2 5.2E+02 0.011 26.0 14.8 106 423-529 250-383 (696)
476 PRK09462 fur ferric uptake reg 32.9 2.4E+02 0.0051 23.0 7.2 60 109-169 7-67 (148)
477 PRK10941 hypothetical protein; 32.8 4E+02 0.0086 24.6 10.8 74 379-456 184-258 (269)
478 COG5191 Uncharacterized conser 32.7 87 0.0019 29.1 4.7 70 479-548 105-175 (435)
479 PRK13800 putative oxidoreducta 32.3 7.6E+02 0.017 27.7 29.4 126 374-509 754-880 (897)
480 COG4941 Predicted RNA polymera 32.3 4.5E+02 0.0097 25.0 11.2 118 391-515 271-399 (415)
481 KOG0530 Protein farnesyltransf 32.1 4E+02 0.0087 24.4 12.2 60 494-553 125-185 (318)
482 PRK09857 putative transposase; 31.7 1.9E+02 0.0041 27.0 7.1 65 485-549 210-274 (292)
483 KOG2581 26S proteasome regulat 31.5 5.1E+02 0.011 25.4 12.8 87 388-480 181-279 (493)
484 PRK13341 recombination factor 30.6 7.3E+02 0.016 26.9 16.8 106 317-427 193-307 (725)
485 smart00638 LPD_N Lipoprotein N 30.4 6.5E+02 0.014 26.3 24.0 62 153-216 309-371 (574)
486 KOG0991 Replication factor C, 30.3 4E+02 0.0088 23.9 12.7 137 261-413 136-273 (333)
487 PF10255 Paf67: RNA polymerase 29.8 1.5E+02 0.0032 29.1 6.1 55 259-313 126-191 (404)
488 KOG1498 26S proteasome regulat 29.4 5.4E+02 0.012 25.1 13.3 99 379-478 134-241 (439)
489 KOG0376 Serine-threonine phosp 29.3 78 0.0017 31.3 4.1 92 455-546 10-103 (476)
490 KOG2396 HAT (Half-A-TPR) repea 29.2 6.2E+02 0.013 25.6 31.8 98 446-543 456-558 (568)
491 TIGR01503 MthylAspMut_E methyl 29.0 1.9E+02 0.0041 28.7 6.6 89 464-557 29-128 (480)
492 KOG2659 LisH motif-containing 28.9 4.2E+02 0.009 23.6 9.6 96 376-476 26-130 (228)
493 TIGR02710 CRISPR-associated pr 28.6 5.6E+02 0.012 25.0 12.1 22 385-406 139-160 (380)
494 COG2812 DnaX DNA polymerase II 28.5 5.8E+02 0.013 26.2 10.1 25 131-155 257-281 (515)
495 cd07153 Fur_like Ferric uptake 28.2 1.6E+02 0.0034 22.7 5.2 45 191-235 6-50 (116)
496 KOG2422 Uncharacterized conser 28.1 6.9E+02 0.015 25.8 14.8 133 377-512 285-450 (665)
497 TIGR02414 pepN_proteo aminopep 27.8 8.8E+02 0.019 27.0 14.9 150 379-537 675-836 (863)
498 PF09454 Vps23_core: Vps23 cor 27.7 1.7E+02 0.0036 20.0 4.4 56 409-466 4-59 (65)
499 KOG4567 GTPase-activating prot 27.3 5.3E+02 0.011 24.2 10.2 71 139-210 263-343 (370)
500 PHA03100 ankyrin repeat protei 27.1 6.6E+02 0.014 25.3 12.3 12 431-442 366-377 (480)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-81 Score=670.01 Aligned_cols=550 Identities=32% Similarity=0.606 Sum_probs=523.6
Q ss_pred hhhhhcccccccccCCCcchHHHHHHHhcCCC---CchHHHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhc
Q 042098 5 AKAYSRHLAFTELNDPSLLREKLLSLLKKCPS---TKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQ 77 (566)
Q Consensus 5 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~ 77 (566)
|-..+..+...+..|+..+ |..+++.|+. ....++++..+.+.|+.|+..++++|+ ++|++++|.++|+.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t---~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYT---FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHcCCCCChhH---HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 3344444444555555444 4445555554 444588999999999999999999998 89999999999999
Q ss_pred CCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHH
Q 042098 78 ISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS 157 (566)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 157 (566)
|++||.++||++|.+|++. |++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|
T Consensus 248 m~~~d~~s~n~li~~~~~~-g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 248 MPRRDCISWNAMISGYFEN-GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred CCCCCcchhHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCch
Q 042098 158 HSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLV 237 (566)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 237 (566)
|+|+.+|++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 042098 238 LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317 (566)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (566)
.|.++++.+.+.|+.|+..++++|+++|++.|++++|.++|++|.++|..+||.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc-----------cCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISAL 386 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 386 (566)
.||..||+.++.+|++.|.++.+.+++..+.+.|+.++.. +|++++|.++|+.+ .||..+||++|.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 9999999999999999999999999999999999988876 89999999999999 89999999999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (566)
++.|+.++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|+++
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESG--VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcC--CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999 9999999999999999999999999999999976799999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+|.+++++|..+|+..+|++|+.+|..+|+.+.++.+.+++.+++|++...|..|+++|...|+|++|.++.+.|+++|+
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeCCccc
Q 042098 547 SKTPGCSWIGIDDPKQ 562 (566)
Q Consensus 547 ~~~~~~~~~~~~~~~~ 562 (566)
+++||+||++++|++|
T Consensus 723 ~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 723 TVDPGCSWVEVKGKVH 738 (857)
T ss_pred CCCCCccEEEECCEEE
Confidence 9999999999999876
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-73 Score=610.30 Aligned_cols=520 Identities=31% Similarity=0.543 Sum_probs=492.9
Q ss_pred hHHHHHHHhcCC---CCchHHHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcC
Q 042098 24 REKLLSLLKKCP---STKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96 (566)
Q Consensus 24 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 96 (566)
..++..+++.|. ......+++..+.+.|..++..++++++ +.|+++.|+++|+.|++||..+||.+|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 344555555554 4445588999999999999999999988 899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 042098 97 WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176 (566)
Q Consensus 97 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (566)
|++++|+++|++|...|+.||..||+.++.+|+..++++.+.+++..|.+.|+.||..++|+|+.+|++.|+++.|.++
T Consensus 166 -g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 -GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred -CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHH
Q 042098 177 FDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY 256 (566)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (566)
|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 336 (566)
+|++|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCccc-----------cCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 042098 337 LDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKE 405 (566)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 405 (566)
++.|.++++.+.+.|..++.. +|++++|.++|++|..+|+.+|+++|.+|++.|+.++|+.+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 999999999999999988765 79999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 042098 406 GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLG 485 (566)
Q Consensus 406 g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 485 (566)
+ ++||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+
T Consensus 484 ~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n 558 (857)
T PLN03077 484 T--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWN 558 (857)
T ss_pred C--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHH
Confidence 5 8999999999999999999999999999999988 99999999999999999999999999999998 68999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhCCChHHHHHHHHHHH-hCCCccCC
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDDSAKMRALMR-EKGVSKTP 550 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~ 550 (566)
+++.+|++.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999999998875 5567889999999999999999999999998 67877653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-73 Score=594.22 Aligned_cols=480 Identities=32% Similarity=0.550 Sum_probs=469.9
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHH
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-LKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH 158 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 158 (566)
+++..+|+.+|.++.+. |++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 84 ~~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 46778999999999999 99999999999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchh
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 238 (566)
.++.+|++.|+++.|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 042098 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318 (566)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (566)
+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc-----------cCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 042098 319 PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-----------CGSIDDALKVFEDMPVTNEVSWNAMISALA 387 (566)
Q Consensus 319 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 387 (566)
||..||+.++.+|++.|.++.|.+++..+.+.|+.++.. +|++++|.++|++|..||+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 999999999999999999999999999999999998876 799999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE 467 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 467 (566)
+.|+.++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++
T Consensus 403 ~~G~~~~A~~lf~~M~~~g--~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEG--VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999999 99999999999999999999999999999999877999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 468 AWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
|.+++++|..+|+..+|++++.+|...|+++.|..+++++.+.+|++...|..++++|.+.|+|++|.+++++|+++|+.
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeCCccc
Q 042098 548 KTPGCSWIGIDDPKQ 562 (566)
Q Consensus 548 ~~~~~~~~~~~~~~~ 562 (566)
++||+||++++++++
T Consensus 561 k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 561 MHPACTWIEVKKQDH 575 (697)
T ss_pred cCCCeeEEEECCeEE
Confidence 999999999998876
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-66 Score=544.41 Aligned_cols=497 Identities=19% Similarity=0.243 Sum_probs=458.0
Q ss_pred HHHhcCCCCchHHHHHHHHHHhCCCCCh-HHHHHhh----cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHH
Q 042098 29 SLLKKCPSTKTVQQIHTQMLINFIQKPN-FLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHS 103 (566)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 103 (566)
.-+..+++..++.++++.|.+.|+.++. .+++.++ +.|.+++|..+|+.|+.||..+||.+|.+|++. |+++.|
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~-g~~e~A 456 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS-QDIDGA 456 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC-cCHHHH
Confidence 3334568888899999999999976544 4444343 789999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 042098 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE- 182 (566)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 182 (566)
.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ---CChhHHHHHHHHHHhcCChhHHHHHHHHhHH--CCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHH
Q 042098 183 ---RDLVSWNSMISGYSKMGYAKEAVELFGRMRE--EEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257 (566)
Q Consensus 183 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (566)
||..+||.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 8999999999999999999999999999976 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMV----NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS 333 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 333 (566)
|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999994 479999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 334 IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
.|++++|..+|+.|...|+. ||..+||+||.+|++.|++++|.++|++|...| +.||.
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~--------------------PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G--i~Pd~ 754 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLR--------------------PTVSTMNALITALCEGNQLPKALEVLSEMKRLG--LCPNT 754 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCCH
Confidence 99999999999999988876 679999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c-------------------CCHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----A-------------------GHLSEAWD 470 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~ 470 (566)
.||+.++.+|++.|+++.|.++|++|.+. |+.||..+|++++..+.+ + +..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999998 999999999999876432 2 12467999
Q ss_pred HHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 471 FVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 471 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+|++|.+. |+..+|+.++.++++.+..+.+..+++.+... .+++..+|..+++.+.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 99999874 99999999998888889999999888887644 467788999999987322 3689999999999999
Q ss_pred ccCCc
Q 042098 547 SKTPG 551 (566)
Q Consensus 547 ~~~~~ 551 (566)
.++.-
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 88664
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-64 Score=524.81 Aligned_cols=468 Identities=17% Similarity=0.260 Sum_probs=435.7
Q ss_pred CChHHHHHhhcCCCchhHHHHhhcCCCCC-----cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 042098 54 KPNFLLIRIIDLKDFNYASLLFHQISRPN-----EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFIS 128 (566)
Q Consensus 54 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 128 (566)
+...+|+.+++.|++++|+++|+.|++++ ..+++.++.+|.+. |.+++|..+++.|.. ||..+|+.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~-g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ-RAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC-CCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 44567778889999999999999997544 44667788889999 999999999999974 899999999999
Q ss_pred HHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCChhHHHHHHHHHHhcCChhHH
Q 042098 129 CANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR----ERDLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a 204 (566)
|++.|+++.|.++|+.|.+.|+.||..+|+++|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999998 48999999999999999999999
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHH--hCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK--NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
+++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.. .++.||..+|+++|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 6789999999999999999999999999999995
Q ss_pred C----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCcccc
Q 042098 283 N----KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358 (566)
Q Consensus 283 ~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 358 (566)
+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|..+++.|.+.|+.
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~----- 681 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK----- 681 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----
Confidence 4 6779999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
||..+|+++|.+|++.|++++|.++|++|.+.| +.||..+|+.||.+|++.|++++|.++|++
T Consensus 682 ---------------pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 682 ---------------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--LRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred ---------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHh----------------------
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQK---------------------- 493 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~---------------------- 493 (566)
|... |+.||..+|+.++.+|++.|++++|.+++++|.+. |+..+|++++..|.+
T Consensus 745 M~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~ 823 (1060)
T PLN03218 745 MKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823 (1060)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 9988 99999999999999999999999999999999764 999999999876542
Q ss_pred -cCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 494 -QKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 494 -~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
.+..+.|..+|++|.+.+ .++..+|..++.++...+.++.+.++++.|...+..++
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 123478999999999987 66788999999999999999999999998877665543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.3e-63 Score=516.13 Aligned_cols=427 Identities=28% Similarity=0.482 Sum_probs=405.7
Q ss_pred chHHHHHHHhcC---CCCchHHHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCCCCcchHHHHHHHHHc
Q 042098 23 LREKLLSLLKKC---PSTKTVQQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISRPNEYAFNVMIRGLTT 95 (566)
Q Consensus 23 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 95 (566)
...+|..++.+| +......+++..|.+.|+.|+..+++.++ ++|+++.|.++|+.|++||.++||++|.+|++
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~ 201 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD 201 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHH
Confidence 344555555555 45555689999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 042098 96 AWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 96 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
. |++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..++|+|+++|+++|++++|.+
T Consensus 202 ~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 202 A-GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred C-cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchH
Q 042098 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255 (566)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (566)
+|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||.
T Consensus 281 vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 335 (566)
.++++|+++|+++|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHH-hCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 336 ALDLGKWVDKYASQ-RGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 336 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
.+++|..+|+.|.+ .|+. |+..+|++++++|++.|++++|.+++++| + +.|+..
T Consensus 441 ~~~~a~~~f~~m~~~~g~~--------------------p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~--~~p~~~ 495 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIK--------------------PRAMHYACMIELLGREGLLDEAYAMIRRA---P--FKPTVN 495 (697)
T ss_pred cHHHHHHHHHHHHHhcCCC--------------------CCccchHhHHHHHHhcCCHHHHHHHHHHC---C--CCCCHH
Confidence 99999999999976 5776 67889999999999999999999999876 3 789999
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
+|+.|+.+|...|+++.|..+++.+. ++.|+ ..+|..|+++|++.|++++|.++++.|.++
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999886 56776 679999999999999999999999999764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-29 Score=276.16 Aligned_cols=516 Identities=12% Similarity=0.060 Sum_probs=339.8
Q ss_pred cCCCcchHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHH----hhcCCCchhHHHHhhcCCC---CCcchHHHHH
Q 042098 18 NDPSLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR----IIDLKDFNYASLLFHQISR---PNEYAFNVMI 90 (566)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll 90 (566)
|.+......+..++...++...+..++..+...... +..++.. +.+.|++++|.+.|+.+.+ .+...|..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334444556666677777777777766666555422 2333322 2278888888888887632 3445666677
Q ss_pred HHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 042098 91 RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL 170 (566)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~ 170 (566)
..+... |++++|++.|+.+.+.... +......++..+.+.|++++|.++++.+... .+.+..++..+...+...|++
T Consensus 405 ~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 405 ISKLSQ-GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHhC-CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCH
Confidence 777777 8888888888888765422 3344455666777778888888887777664 344566777777777777888
Q ss_pred HHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 042098 171 DSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVV 247 (566)
Q Consensus 171 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 247 (566)
++|...|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.
T Consensus 482 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877777643 344566667777777777777777777776643 2345566667777777777777777777776
Q ss_pred HhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 042098 248 KNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL 324 (566)
Q Consensus 248 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 324 (566)
+.++. +...+..++..+...|++++|..+++.+.+ .+...|..+...+.+.|++++|+..|+++.+.. +.+...+
T Consensus 561 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 561 ELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred HhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 65543 344556677777777777777777777633 345667777777777777777777777776643 2344556
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCC
Q 042098 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGR 391 (566)
Q Consensus 325 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 391 (566)
..+..++...|+.++|..+++.+.+........ .|++++|..+++.+. +++...+..+...+...|+
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 666666777777777777777766543321111 567777777776664 3455566666677777777
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 471 (566)
+++|...|+++...+ |+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.
T Consensus 719 ~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 719 YPAAIQAYRKALKRA----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777777777776643 44456666666777777777777777766653 233455666667777777777777777
Q ss_pred HHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 472 VERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 472 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
|+++... ++...++.+...+...|+ .+|+..++++.+..|+++..+..++.++...|++++|.++++++.+.+..
T Consensus 793 ~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7766542 445566666666666666 66777777777666666666666777777777777777777776665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-29 Score=275.73 Aligned_cols=505 Identities=11% Similarity=0.016 Sum_probs=300.7
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHH----hhcCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCC
Q 042098 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIR----IIDLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAW 97 (566)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 97 (566)
..+..++...++...+...++.+.+.... +...+.. +...|++++|.+.|+...+ .+...+..++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~- 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS- 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc-
Confidence 34444445555555555555555443221 1111111 1256666666666665522 1233444555566666
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
|++++|+.+++.+.+. .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6667777666666553 23455566666666666667777777666666543 233445555666666666777666666
Q ss_pred hccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 178 DEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 178 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
+.+.+ .+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|++++|..+++.+.+..+ .+
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 600 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DS 600 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CC
Confidence 66543 245566666666666666777776666665542 22344555566666666667776666666655433 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
..++..+..++...|++++|...|+.+.+ .+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45566666666666777777666666532 244456666666666667777777666666542 22345566666666
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC--CCChhHHHHHHHHHHHcCChHHHHHHH
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALLLF 399 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~ 399 (566)
...|+.++|..+++.+.+........ .|++++|...|+.+. .|+..++..++.++.+.|++++|...+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666666544322111 466666666666554 344455566666666667777777666
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-
Q 042098 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK- 478 (566)
Q Consensus 400 ~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 478 (566)
+++.+.. +.+...+..+...|...|+.++|.+.|+++.+. .+++..++..+...+...|+ .+|+.++++....
T Consensus 760 ~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 760 EAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 6666543 345556666666666667777777776666653 12335566666666666666 6666666665432
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 479 -VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 479 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+...+..+...+...|++++|.+.++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344555566666666677777777777766666666666666677777777777776666654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.7e-21 Score=211.77 Aligned_cols=473 Identities=11% Similarity=0.019 Sum_probs=299.0
Q ss_pred cCCCchhHHHHhhcCCC--CCcchH-----------------HHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcc-cHH
Q 042098 64 DLKDFNYASLLFHQISR--PNEYAF-----------------NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF-TYP 123 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 123 (566)
+.|+.++|.+.+++..+ |+...+ ..+...+.+. |++++|+..|+.+.+.+ +|+.. ...
T Consensus 74 ~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~-g~~~eA~~~~~~~l~~~-p~~~~la~~ 151 (1157)
T PRK11447 74 RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATT-GRTEEALASYDKLFNGA-PPELDLAVE 151 (1157)
T ss_pred hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC-CCHHHHHHHHHHHccCC-CCChHHHHH
Confidence 78888888888887743 333222 1222356667 88888888888887643 22321 111
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------------------
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD------------------- 184 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------------------- 184 (566)
.........|+.++|.+.++.+.+.. +-+...+..+...+...|+.++|+..++++.+..
T Consensus 152 y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 152 YWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred HHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCC
Confidence 11122234578888888888887764 3355667777788888888888888877653210
Q ss_pred ----hhHH----------------------------------HHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 042098 185 ----LVSW----------------------------------NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSV 226 (566)
Q Consensus 185 ----~~~~----------------------------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (566)
...+ ......+...|++++|+..|++..+.. +.+...+..+
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~L 309 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGAL 309 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 0000 011334566788999999998887742 2256777788
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhCCCchH-HHH------------HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHH
Q 042098 227 LGSCGDLGDLVLGKWVEGFVVKNKMDLNF-YMG------------SALIDMYGKCGALVPARRVFDAMVN--K-DVVTWN 290 (566)
Q Consensus 227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 290 (566)
...+.+.|++++|...+++..+..+.... ..+ ......+.+.|++++|...|++..+ | +...+.
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888899999999999988876654321 111 1224567788999999999988744 2 455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhC----------CCCcc---
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRG----------LRHDI--- 356 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~--- 356 (566)
.+...+...|++++|++.|++..+. .|+ ...+..+...+. .++.++|..+++.+.... +..+.
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 7888888999999999999988875 333 344444444443 345677766654432211 00000
Q ss_pred ------ccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 357 ------FCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 357 ------~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
..|++++|.+.|++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...+
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCC
Confidence 1478888888888765 4456677778888888888888888888887643 122222222222233334
Q ss_pred cHHHHHHHHHHhHHh-------------------------------------c-CCCCChhHHHHHHHHHHhcCCHHHHH
Q 042098 428 LVDEGRRLFDLMSSS-------------------------------------F-GLIPKSEHYSCMVDLYARAGHLSEAW 469 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~-------------------------------------~-~~~p~~~~~~~l~~~~~~~g~~~~A~ 469 (566)
+.++|...++.+... . ..+.+...+..+...+.+.|++++|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 444444433332110 0 01223445566667777777777777
Q ss_pred HHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 470 DFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 470 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+.|++.... .+...+..++..+...|+.++|++.++++.+..|+++..+..++.++...|++++|.++++++.....
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 777776542 34566677777777777777777777777777777777777777777777777777777777766543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=6e-21 Score=210.14 Aligned_cols=401 Identities=12% Similarity=0.068 Sum_probs=309.9
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh---hHHH------------
Q 042098 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDL---VSWN------------ 189 (566)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------ 189 (566)
..+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44567799999999999998864 34677888899999999999999999988764 221 1121
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Q 042098 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269 (566)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 269 (566)
.....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+..+. +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 12345678899999999999988753 234556677788889999999999999999887654 3344566666664 46
Q ss_pred CHHHHHHHHhcCCCCC------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCC
Q 042098 270 ALVPARRVFDAMVNKD------------VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGA 336 (566)
Q Consensus 270 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 336 (566)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899998888774321 123445667788899999999999999885 443 4566677788999999
Q ss_pred hhHHHHHHHHHHHhCCC-Cccc---------cCCHHHHHHHHccCCCC----Ch---------hHHHHHHHHHHHcCChH
Q 042098 337 LDLGKWVDKYASQRGLR-HDIF---------CGSIDDALKVFEDMPVT----NE---------VSWNAMISALAFNGRAH 393 (566)
Q Consensus 337 ~~~a~~~~~~~~~~~~~-~~~~---------~~~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~ 393 (566)
+++|...++.+.+.... ++.. .++.++|...++.+... +. ..+..+...+...|+.+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999998874432 2211 58889999999887622 11 12234567788999999
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFV 472 (566)
Q Consensus 394 ~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 472 (566)
+|..+++. .+++...+..+...+.+.|++++|+..|+...+. .|+ ...+..++..|...|++++|++.+
T Consensus 591 eA~~~l~~-------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 591 EAEALLRQ-------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHh-------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999872 3456667778888999999999999999999865 555 778899999999999999999999
Q ss_pred HhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 473 ERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS------GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 473 ~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+..... | +...+..+..++...|++++|.+++++++...|+++ ..+..++.++...|++++|...++++..
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988764 3 455667778889999999999999999998876543 3666779999999999999999999863
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.6e-18 Score=182.52 Aligned_cols=513 Identities=8% Similarity=-0.038 Sum_probs=331.6
Q ss_pred CcchHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCC--CCC-cchHHHHHHHH----
Q 042098 21 SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQIS--RPN-EYAFNVMIRGL---- 93 (566)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~---- 93 (566)
......+..++...++...+....+...+... .+...+..+...+++++|..+++++. .|+ ...+..+....
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccc
Confidence 34445556666666777776666666655532 23333333445688888888888883 343 34444444330
Q ss_pred -HcCCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCH
Q 042098 94 -TTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV-FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR-CGKL 170 (566)
Q Consensus 94 -~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~ 170 (566)
.+- .++++|.+.++ .......|+..+.... ...|.+.++++.|.+++..+.+.+ +.+......|..+|.. .++
T Consensus 157 ~l~y-~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~- 232 (987)
T PRK09782 157 ALRL-AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD- 232 (987)
T ss_pred hhhh-hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-
Confidence 111 33455555555 3333334445545555 788888899999999999998876 3345556666667776 366
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC-CCHHHHHHH-----------------------
Q 042098 171 DSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL-PDEITLVSV----------------------- 226 (566)
Q Consensus 171 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~l----------------------- 226 (566)
+.+..+++...+.+...+..+...|.+.|+.++|..+++++...-.. |...++..+
T Consensus 233 ~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 233 DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 88888877655567888888888899999999998888887543211 222222211
Q ss_pred -------HHHhcCCCCchhHHHHH-----------------------------HHHHHhCCCchHHHHHHHHHHHHhcCC
Q 042098 227 -------LGSCGDLGDLVLGKWVE-----------------------------GFVVKNKMDLNFYMGSALIDMYGKCGA 270 (566)
Q Consensus 227 -------l~~~~~~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (566)
+..+.+.++++.++++. ..+.+..+ -+....--+.-...+.|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccc
Confidence 22233333333333221 11111111 012222223334456788
Q ss_pred HHHHHHHHhcCCC-C-----ChhHHHHHHHHHHHcCC---HHHHHHH------------H----------HHHHH-CCCC
Q 042098 271 LVPARRVFDAMVN-K-----DVVTWNAMITAYAQNGL---SNEAIML------------F----------NRMKY-AGVN 318 (566)
Q Consensus 271 ~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~a~~~------------~----------~~m~~-~g~~ 318 (566)
.++|.++|+.... + +....+-++..|.+.+. ..++..+ . ..... .+..
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 8888888887743 1 22344456666666655 3333333 1 11111 1122
Q ss_pred C---CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc---------cCCHHHHHHHHccCC--CCChhHHHHHHH
Q 042098 319 P---DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF---------CGSIDDALKVFEDMP--VTNEVSWNAMIS 384 (566)
Q Consensus 319 p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~~--~~~~~~~~~li~ 384 (566)
| +...+..+..++.. ++.++|...+............. .|++++|...|+.+. +|+...+..+..
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~ 550 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAAN 550 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 2 34445555545444 77777887666655543221101 688999999998765 455556677778
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 042098 385 ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464 (566)
Q Consensus 385 ~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (566)
++.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999998754 223333333444455669999999999999854 6788889999999999999
Q ss_pred HHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 465 LSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 465 ~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+++|+..+++.... | +...+..+..++...|+.++|+..++++++..|+++..+..++.++...|++++|+..+++..
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988763 4 556677778899999999999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 042098 543 EKGV 546 (566)
Q Consensus 543 ~~g~ 546 (566)
+...
T Consensus 705 ~l~P 708 (987)
T PRK09782 705 DDID 708 (987)
T ss_pred hcCC
Confidence 7653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.1e-20 Score=172.09 Aligned_cols=382 Identities=14% Similarity=0.102 Sum_probs=216.7
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh--hHH-HHHHHH
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL--VSW-NSMISG 194 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~-~~li~~ 194 (566)
-..+|..+...+...|++..|..+++.+++.. +-....|.-+..++...|+.+.|...|.+..+-|+ ... +.+-..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 44555556666666666666666666665542 12344555555566666666666665555554222 211 122223
Q ss_pred HHhcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHH
Q 042098 195 YSKMGYAKEAVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP 273 (566)
Q Consensus 195 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (566)
+-..|+.++|...|.+..+ ..|. ...|+.+...+-..|+.-.|.+-|++.++.++.. ...|-.|.+.|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchH
Confidence 3334556666666655544 2232 2345555555555666666666666555544332 2234445555666666666
Q ss_pred HHHHHhcCC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 274 ARRVFDAMV--NK-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 274 A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
|...|.... +| ....+..+...|..+|..+-|++.|++..+. .|+ ...|+.+..++-..|++.+|...+.....
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 665555542 22 3344555555555666666666666665553 332 34555555565555555555555554444
Q ss_pred hCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCc
Q 042098 350 RGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGL 428 (566)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~ 428 (566)
.... ...+.+.|...|...|.++.|.++|....+ +.|. ...++.|...|-+.|+
T Consensus 349 l~p~---------------------hadam~NLgni~~E~~~~e~A~~ly~~al~----v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 349 LCPN---------------------HADAMNNLGNIYREQGKIEEATRLYLKALE----VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hCCc---------------------cHHHHHHHHHHHHHhccchHHHHHHHHHHh----hChhhhhhhhhHHHHHHhccc
Confidence 3221 244566667777777777777777776665 3344 3456666666777777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 429 VDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVD-EIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+++|+..+++.. .+.|+ ...|+.+...|-..|+.+.|++.+.+... +|. ...++.|...+...|+..+|++.++
T Consensus 404 l~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 404 LDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 777777776665 44666 45666777777777777777776666543 233 3455666677777777777777777
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
.++++.|+.+..|..++.++--..+|.+
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 7777777777777766666555555544
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=7.2e-20 Score=180.07 Aligned_cols=301 Identities=14% Similarity=0.104 Sum_probs=215.9
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch---HHHHHHHHHHHHhcCC
Q 042098 194 GYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN---FYMGSALIDMYGKCGA 270 (566)
Q Consensus 194 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 270 (566)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666665532 11233455555555556666666666555554332211 2345677778888888
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 042098 271 LVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 271 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 8888888888754 3556778888888888888888888888876542221100
Q ss_pred HHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 348 SQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|
T Consensus 179 ---------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 179 ---------------------------IAHFYCELAQQALARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQG 228 (389)
T ss_pred ---------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCC
Confidence 01235566777888999999999999988753 234567777888899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042098 428 LVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVM 504 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (566)
++++|.++++++... .|+ ..++..++.+|...|++++|.+.++++.. .|+...+..++..+.+.|++++|..++
T Consensus 229 ~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 229 DYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998864 344 45678889999999999999999998765 377777788889999999999999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHh---CCChHHHHHHHHHHHhCCCccCCcee
Q 042098 505 QLLLEIESSNSGNYVISSKIFAN---LKMWDDSAKMRALMREKGVSKTPGCS 553 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~ 553 (566)
+++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.+.
T Consensus 306 ~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 306 REQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 999999888764 4444444443 56999999999999999999988854
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.3e-19 Score=168.28 Aligned_cols=429 Identities=13% Similarity=0.084 Sum_probs=347.2
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042098 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165 (566)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (566)
-..|.+-.-+. |++.+|.+.-...-+.+ +.+....-.+-..+.+..+.+...+.-....+. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~-gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQG-GDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhc-cCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 34455556677 99999998766655443 223333333334455666666655544444433 2345678999999999
Q ss_pred hcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHH-HHHHhcCCCCchhHHH
Q 042098 166 RCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS-VLGSCGDLGDLVLGKW 241 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~ 241 (566)
..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.....+ +-......|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999876 3567899999999999999999999998876 6676654433 3344455899999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 042098 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV---VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVN 318 (566)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 318 (566)
-|.+.++..+.. ...|+.|...+...|+...|+..|++...-|+ ..|-.|...|...+.+++|...|.+.... +
T Consensus 206 cYlkAi~~qp~f-AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 206 CYLKAIETQPCF-AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHHhhCCce-eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 999888876643 34578899999999999999999999866443 47888999999999999999999887764 5
Q ss_pred CCH-hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 319 PDK-ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 319 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
|+. ..+..+...|...|.++.|...+++....... -..+|+.|..++-..|+..+|.+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---------------------F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---------------------FPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---------------------chHHHhHHHHHHHhccchHHHHH
Confidence 654 56677777789999999999999999875433 25689999999999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.|.+..... +-...+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..|++..
T Consensus 342 cYnkaL~l~---p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 342 CYNKALRLC---PNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHhC---CccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 999998863 3446788999999999999999999998877 45777 6788999999999999999999999876
Q ss_pred C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 477 E-KVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 477 ~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
. +|+ ...++.+...|-..|+.+.|.+.+.+++..+|.-...+..|+.+|...|+..+|+.-+++..+.....+
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 5 354 568899999999999999999999999999999999999999999999999999999999988765543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.1e-17 Score=176.36 Aligned_cols=461 Identities=11% Similarity=-0.034 Sum_probs=303.8
Q ss_pred cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHH
Q 042098 64 DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 140 (566)
..|++++|+..|+... +.+..++..+...|.+. |++++|+..+++..+. .|+...|..++..+ ++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~-g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF-GHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 5699999999998873 23456778888888898 9999999999998876 45555555544333 88889999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH--------HHhcCCHHHHHHHHhccCCC--ChhHHHH-HHHHHHhcCChhHHHHHHH
Q 042098 141 VHSSVFKIGLDEDDHVSHSLITM--------YARCGKLDSARKVFDEIRER--DLVSWNS-MISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~~~~~~a~~~~~ 209 (566)
+++++.+.. +-+..++..+... |.+.++..++++ .....+ +..+... ..+.|.+.|++++|++.+.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999998874 3345555555554 666666666666 222233 3443344 4788999999999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcC-CCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC-----
Q 042098 210 RMREEEFLPDEITLVSVLGSCGD-LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----- 283 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 283 (566)
++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+..+...++..|.+.|+.++|.++++++..
T Consensus 207 ~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 998875433 3334455556665 355 666666442 3335677778888888889999888888888732
Q ss_pred CChhHH------------------------------HHHHHHH-------------------------------------
Q 042098 284 KDVVTW------------------------------NAMITAY------------------------------------- 296 (566)
Q Consensus 284 ~~~~~~------------------------------~~li~~~------------------------------------- 296 (566)
|...+| -.++..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 110000 0011122
Q ss_pred --------------------------HHcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhccCCh---hHHHH---
Q 042098 297 --------------------------AQNGLSNEAIMLFNRMKYA--GVNPDKITLIGVLSACASIGAL---DLGKW--- 342 (566)
Q Consensus 297 --------------------------~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~---~~a~~--- 342 (566)
.+.|+.++|.++|+..... +..++.....-++..+.+.+.+ ..+..
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 2344555555555555431 1122222233444555444331 11111
Q ss_pred -------------------HHHHHHH-hCCCCc--cc-----------cCCHHHHHHHHccCC--CCChhHHHHHHHHHH
Q 042098 343 -------------------VDKYASQ-RGLRHD--IF-----------CGSIDDALKVFEDMP--VTNEVSWNAMISALA 387 (566)
Q Consensus 343 -------------------~~~~~~~-~~~~~~--~~-----------~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~ 387 (566)
....... .+..|+ .. .++.++|...|.+.. .|+......+...+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 1111111 111111 00 245556776555544 444333333444456
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 466 (566)
..|++++|...++++... +|+...+..+..++.+.|+.++|...++...+. .|+ ...+..+...+.+.|+++
T Consensus 521 ~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 521 QVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHH
Confidence 889999999999887653 355555666677788899999999999888764 344 333434444555669999
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 467 EAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 467 ~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+|+..+++... .|+...+..+..++.+.|+.++|+..++++++.+|+++..+..++.++...|++++|+..++++.+..
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999998876 38888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 042098 546 V 546 (566)
Q Consensus 546 ~ 546 (566)
.
T Consensus 674 P 674 (987)
T PRK09782 674 P 674 (987)
T ss_pred C
Confidence 4
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=8.5e-18 Score=174.03 Aligned_cols=416 Identities=13% Similarity=0.036 Sum_probs=285.0
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042098 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165 (566)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (566)
+......+.+. |++++|+..|++..+. .|+...|..+..++.+.|++++|.+.++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~-~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRN-KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34455677778 9999999999998864 5777888888888899999999999999988764 334567888888999
Q ss_pred hcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHhcCCCCchhHH
Q 042098 166 RCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRMREEEF--LPDEITLVSVLGSCGDLGDLVLGK 240 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~ 240 (566)
..|++++|+.-|...... +......++..+.. ..+........+... .|...........+ ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcch
Confidence 999999998877654321 11111122221111 122222222222111 12222111111111 111111
Q ss_pred HHHHHHHHhCCCchH-HHHHHHHHH---HHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 042098 241 WVEGFVVKNKMDLNF-YMGSALIDM---YGKCGALVPARRVFDAMVNK------DVVTWNAMITAYAQNGLSNEAIMLFN 310 (566)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (566)
.-+....+ ..+.. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11111111 11110 000111100 12346788999998887532 34467788888889999999999999
Q ss_pred HHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc
Q 042098 311 RMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389 (566)
Q Consensus 311 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 389 (566)
+..+. .|+ ...|..+...+...|++++|...++.+.+... .+...|..+...+...
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---------------------~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS---------------------EDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHc
Confidence 98875 454 44677777778888888888887777665432 3567888999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 468 (566)
|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+..++...|++++|
T Consensus 413 g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred CCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHH
Confidence 99999999999999864 335667777888899999999999999998864 454 67888999999999999999
Q ss_pred HHHHHhCCCC-CCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 042098 469 WDFVERMPEK-VDE-I-------VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 469 ~~~~~~~~~~-~~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
++.|++...- |+. . .++..+..+...|++++|.++++++++.+|++...+..++.++.+.|++++|.+.++
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999986542 321 1 112222233446999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 042098 540 LMREK 544 (566)
Q Consensus 540 ~~~~~ 544 (566)
+..+.
T Consensus 567 ~A~~l 571 (615)
T TIGR00990 567 RAAEL 571 (615)
T ss_pred HHHHH
Confidence 98765
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=4.5e-17 Score=171.72 Aligned_cols=395 Identities=8% Similarity=-0.042 Sum_probs=229.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCC
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGY 200 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 200 (566)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..++++..+ .+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33444445555555555555544311 22333445555555555555555555555322 233444455555555555
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 042098 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (566)
+++|+..+++..+. .+.+.. +..+..++...|+.++|...++.+.+..+.. ...+..+..++...|..++|.+.++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 55555555555443 111223 4444455555555555555555555554442 22233455566666666667766666
Q ss_pred CCCCChh--------HHHHHHHHH-----HHcCCH---HHHHHHHHHHHHC-CCCCCHh-HHH----HHHHHHhccCChh
Q 042098 281 MVNKDVV--------TWNAMITAY-----AQNGLS---NEAIMLFNRMKYA-GVNPDKI-TLI----GVLSACASIGALD 338 (566)
Q Consensus 281 ~~~~~~~--------~~~~li~~~-----~~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ll~~~~~~g~~~ 338 (566)
... ++. ....++... ...+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.+
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 544 111 111122211 112233 6677777777653 2223221 111 1123334555566
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC--CHHHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP--NDVTF 416 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p--~~~t~ 416 (566)
+|...++.+.+.+... |+ ..-..+..+|...|++++|+..|+++.+..+ ..+ .....
T Consensus 255 eA~~~~~~ll~~~~~~-------------------P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p-~~~~~~~~~~ 313 (765)
T PRK10049 255 DVISEYQRLKAEGQII-------------------PP-WAQRWVASAYLKLHQPEKAQSILTELFYHPE-TIADLSDEEL 313 (765)
T ss_pred HHHHHHHHhhccCCCC-------------------CH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC-CCCCCChHHH
Confidence 6655555554433110 11 1122246678888999999999888876431 110 13445
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFG----------LIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDE 481 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 481 (566)
..+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++... .+.
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 5666677888999999998888875410 1122 124456777888889999999999887653 456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..+..+...+...|+.++|++.++++++.+|++...+..++..+...|++++|..+++++.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 677778888888999999999999999999999888888888999999999999998888654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.5e-18 Score=170.79 Aligned_cols=298 Identities=13% Similarity=0.050 Sum_probs=174.0
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED---DHVSHSLITMYARCGK 169 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~ 169 (566)
+... |++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 45 ~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLN-EQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhc-CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445 67777777777777653 22444566666667777777777777777665432211 1345556666666666
Q ss_pred HHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 042098 170 LDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFV 246 (566)
Q Consensus 170 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 246 (566)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 6666666666654 3445666666666666666666666666655432221100
Q ss_pred HHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042098 247 VKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKIT 323 (566)
Q Consensus 247 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 323 (566)
....+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 011223445555556666666666665532 2 233555566666666666667666666665422111234
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042098 324 LIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMS 403 (566)
Q Consensus 324 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 403 (566)
+..+..++...|+.++|...++.+.+.. |+...+..++..+.+.|++++|..+++++.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~----------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY----------------------PGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4455555555555555555444444321 233344666777777788888888887777
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh---hCcHHHHHHHHHHhHHhcCCCCChh
Q 042098 404 KEGGAARPNDVTFIGVLSACVH---AGLVDEGRRLFDLMSSSFGLIPKSE 450 (566)
Q Consensus 404 ~~g~~~~p~~~t~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~ 450 (566)
+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++.
T Consensus 310 ~~----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 310 RR----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred Hh----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 64 3777777777766554 44777777777777766 6666654
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=2.1e-17 Score=170.53 Aligned_cols=373 Identities=8% Similarity=-0.065 Sum_probs=258.8
Q ss_pred HHccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhH
Q 042098 129 CANLLALNHGVSVHSSVFKIGL--DEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 203 (566)
+.++.+++.-.-++....+..- ..+..-...++..+.+.|++++|+.+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3456677766655554433210 11222233455667778888888888887754 244556666677777888888
Q ss_pred HHHHHHHhHHCCCCC-CHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 204 AVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 204 a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
|+..|+++... .| +...+..+...+...|+.+.|...++.+.+..+. +...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 98888888773 34 3456667777888888888888888888876544 44566778888888888888888887662
Q ss_pred C--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccC
Q 042098 283 N--KD-VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359 (566)
Q Consensus 283 ~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (566)
. |+ ...+..+ ..+...|++++|+..++.+.+....++......+..++...|+.++|...+........
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p------- 243 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL------- 243 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------
Confidence 2 32 2333333 34778888888888888887654334444445555667777777777777766665432
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 360 SIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE----ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...
T Consensus 244 --------------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 244 --------------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---SDNVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred --------------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 256677788888888888875 788888888753 33456777888888888888888888
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 436 FDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVL-GALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 436 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
+++.... .|+ ...+..+..+|.+.|++++|++.++++... |+...+ ..+..++...|+.++|...|+++++..|
T Consensus 307 l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 307 LQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8888754 455 556677788888888888888888887643 554433 3345677888888888888888888888
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
++. ...+++|...+.+..+.
T Consensus 384 ~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 384 SHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred hhc------------hhhHHHHHHHHHHHHHh
Confidence 764 34555666666666654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=4.5e-17 Score=168.01 Aligned_cols=377 Identities=10% Similarity=-0.028 Sum_probs=280.4
Q ss_pred HHHcCCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 92 GLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
.+.+. .+|+...-+|..-.+. .-.-+..-...++..+.+.|+++.|..+++........+ ......++......|+
T Consensus 14 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQ-EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhh-hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCC
Confidence 34456 6777766666655432 111234456667778889999999999999998876444 3344445566677999
Q ss_pred HHHHHHHHhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHH
Q 042098 170 LDSARKVFDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 170 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
+++|...++.+.+ | +...+..+...+.+.|++++|+..+++.... .|+ ...+..+...+...|+.++|...+..
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999999875 3 5667888889999999999999999999873 444 56677888889999999999999998
Q ss_pred HHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 042098 246 VVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321 (566)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 321 (566)
+....+.+....+. + ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..+++..... +.+.
T Consensus 170 ~~~~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 170 QAQEVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHhCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 88777665443333 3 3478889999999999987543 23344555678889999999999999998764 2345
Q ss_pred hHHHHHHHHHhccCChhH----HHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 322 ITLIGVLSACASIGALDL----GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 322 ~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..+..+...+...|++++ |...++...+.. +.+...+..+...+...|++++|..
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---------------------P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---------------------SDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---------------------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566667777888888775 555555555432 2367889999999999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+++..+.. +-+......+...+...|++++|...++.+... .|+. ..+..+..++...|++++|++.|++..
T Consensus 306 ~l~~al~l~---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 306 LLQQSLATH---PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999998864 234556777788899999999999999988865 5654 334445678899999999999999876
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 477 EK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 477 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.. |+.. ..++++|...+.++.+.-+.
T Consensus 380 ~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 380 QARASHL-----------PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred HhChhhc-----------hhhHHHHHHHHHHHHHhcCC
Confidence 53 5442 34556788888888876543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=8e-16 Score=159.09 Aligned_cols=439 Identities=10% Similarity=-0.018 Sum_probs=287.3
Q ss_pred ChHHHHHhh--cCCCchhHHHHhhcCCC--CCc--chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCC-cccHHHH--
Q 042098 55 PNFLLIRII--DLKDFNYASLLFHQISR--PNE--YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFV-- 125 (566)
Q Consensus 55 ~~~~~~~l~--~~g~~~~A~~~~~~~~~--~~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-- 125 (566)
+...-.+++ +.|+++.|+..|++..+ |+. ..+ .++..+... |+.++|+..+++.. .|+ ...+..+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~-G~~~~A~~~~eka~----~p~n~~~~~llal 108 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA-GRDQEVIDVYERYQ----SSMNISSRGLASA 108 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc-CCcHHHHHHHHHhc----cCCCCCHHHHHHH
Confidence 333334444 89999999999998853 443 234 778888888 99999999999987 232 2233333
Q ss_pred HHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHh--cCChhH
Q 042098 126 FISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK--MGYAKE 203 (566)
Q Consensus 126 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~ 203 (566)
...+...|++++|.++++.+.+... -++..+..++..+...++.++|+..++.+...+......+..++.. .++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence 4567788999999999999988753 3466777888889999999999999999887444332234444444 555656
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchH-----HHHHHHHHHH---H--hcCC---
Q 042098 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF-----YMGSALIDMY---G--KCGA--- 270 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~---~--~~g~--- 270 (566)
|++.++++.+.. +-+...+..++.++.+.|-...|.++...-.+.--+.+. .....+++.- . ...+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999998852 224566677778888888888887766543221111110 0011112110 0 1112
Q ss_pred HHHHHHHHhcCCC-----CChh-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 271 LVPARRVFDAMVN-----KDVV-----TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 271 ~~~A~~~~~~~~~-----~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
.+.|+.-++.+.. |... ..--.+.++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 2334444444322 2111 12234556777888888888888888887777878888888888888888888
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-----------CC
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG-----------AA 409 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~~ 409 (566)
..++..+........ -..++......|.-+|...+++++|..+++++.+.-+ ..
T Consensus 347 ~~l~~~~~~~~~~~~---------------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 347 APILSSLYYSDGKTF---------------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhhcccccc---------------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 887777755322100 0013444457788888888888888888888876431 01
Q ss_pred CCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 042098 410 RPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA 486 (566)
Q Consensus 410 ~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 486 (566)
.||-. .+..++..+...|+..+|++.++.+... -+-|......+.+.+...|.+.+|++.++..... | +..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 11222 2334455677788888888888888653 2335777778888888888888888888765442 3 3455556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.+.++...|++++|..+.+.+.+..|+++.+-
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 66777778888888888888888888877443
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6.2e-16 Score=160.23 Aligned_cols=423 Identities=10% Similarity=-0.030 Sum_probs=290.4
Q ss_pred HHHhhcCCCchhHHHHhhcCC--CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 042098 59 LIRIIDLKDFNYASLLFHQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 136 (566)
.+.+.+.|+++.|+..|++.. .|+...|..+..+|.+. |++++|++.++...+.. +.+...+..+..++...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 455558999999999999873 47778888888999999 99999999999998864 225567888899999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 042098 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216 (566)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 216 (566)
+|..-+......+...+.. ...++..+........+...++.-.. +...+..+. .|...........-++.-.+ .
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~ 286 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVG-NYLQSFRPKPRPAGLEDSNE--L 286 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHH-HHHHHccCCcchhhhhcccc--c
Confidence 9999887765543222222 12222222221222334444433222 222222222 22222222222222221111 1
Q ss_pred CCCH-HHHHHHHH---HhcCCCCchhHHHHHHHHHHhC-CCc-hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh
Q 042098 217 LPDE-ITLVSVLG---SCGDLGDLVLGKWVEGFVVKNK-MDL-NFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVV 287 (566)
Q Consensus 217 ~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 287 (566)
.|.. ..+..+.. -....+++++|...++...+.+ ..| ....+..+..++...|++++|...|++..+ | +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 1111 11111111 1133467888999999888765 223 445677888888999999999999998854 3 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+...
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--------------- 430 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--------------- 430 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc---------------
Confidence 77888888999999999999999988753 23456777777788888888888877777665432
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
.+...+..+..++.+.|++++|+..|++..+.. +-+...+..+...+...|++++|+..|+..... .|
T Consensus 431 ------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p 498 (615)
T TIGR00990 431 ------DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EK 498 (615)
T ss_pred ------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CC
Confidence 356778888999999999999999999998753 345678888899999999999999999998754 34
Q ss_pred Ch-h-------HHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 448 KS-E-------HYSCMVDLYARAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 448 ~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+. . .++.....+...|++++|.+++++... .| +...+..+...+...|++++|.+.|+++.++.+....
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 31 1 112222334456999999999998654 24 4456888999999999999999999999998765443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.6e-16 Score=165.98 Aligned_cols=394 Identities=10% Similarity=0.016 Sum_probs=223.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
|+.++|++++.+..... +.+...+..+..++.+.|++++|.++++..++.. +.+...+..+...+...|++++|...+
T Consensus 29 g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444444444444311 1222234444444444444444444444444431 122333334444444445555554444
Q ss_pred hccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc
Q 042098 178 DEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253 (566)
Q Consensus 178 ~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (566)
++..+ | +.. +..+...+...|++++|+..++++.+. .|+ ...+..+..++...+..+.|...++.... .|
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p 180 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TP 180 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CH
Confidence 44432 1 222 444444444445555555555444442 222 22222333333344444444444433221 11
Q ss_pred hH------HHHHHHHHHH-----HhcCCH---HHHHHHHhcCCC-----CChh-HH----HHHHHHHHHcCCHHHHHHHH
Q 042098 254 NF------YMGSALIDMY-----GKCGAL---VPARRVFDAMVN-----KDVV-TW----NAMITAYAQNGLSNEAIMLF 309 (566)
Q Consensus 254 ~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~~~~~~~a~~~~ 309 (566)
+. .....++... ...+++ ++|++.++.+.+ |+.. .+ ...+..+...|++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 00 0011112111 112223 556666666542 2111 11 11134456778889999999
Q ss_pred HHHHHCCCC-CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH
Q 042098 310 NRMKYAGVN-PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388 (566)
Q Consensus 310 ~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 388 (566)
+.+.+.+.. |+. ....+..++...|++++|...++.+.+...... ......+..+..++..
T Consensus 261 ~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~-----------------~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 261 QRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA-----------------DLSDEELADLFYSLLE 322 (765)
T ss_pred HHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC-----------------CCChHHHHHHHHHHHh
Confidence 988876532 332 222245577788888888877777665321100 0013345666778889
Q ss_pred cCChHHHHHHHHHHHhCCC---------CCCCCH---HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 042098 389 NGRAHEALLLFERMSKEGG---------AARPND---VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCM 455 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~---------~~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 455 (566)
.|++++|..+++++....+ .-.|+. ..+..+...+...|+.++|+++++++... .|+ ...+..+
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~l 399 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDY 399 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 9999999999999987531 012332 24456677888999999999999999865 444 7788999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
...+...|++++|++.+++.... |+ ...+...+..+...|++++|+.+++++++..|+++.+...
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999998763 55 5566667778899999999999999999999999855443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=6.5e-15 Score=152.41 Aligned_cols=428 Identities=10% Similarity=-0.004 Sum_probs=318.7
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN--FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (566)
.|...| ...+. |+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++..... -.........+..
T Consensus 37 ~y~~ai-i~~r~-Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 37 QYDSLI-IRARA-GDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHH-HHHhC-CCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 455555 45577 9999999999999886 3443 244 7888888889999999999998721 1122233333466
Q ss_pred HHHhcCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhH
Q 042098 163 MYARCGKLDSARKVFDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 239 (566)
.+...|++++|+.+|+++.+ | +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHH
Confidence 88889999999999999986 3 566777888899999999999999999976 456666665554555456666669
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHH--------HHHHHH-----HHHcCCH---
Q 042098 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK-DVVTW--------NAMITA-----YAQNGLS--- 302 (566)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~--------~~li~~-----~~~~~~~--- 302 (566)
...++++.+..+. +...+..++..+.+.|-...|.++..+-+.- +...+ ..+++. -...+++
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999998754 5566678889999999999999998876531 11111 111110 0012233
Q ss_pred HHHHHHHHHHHHC-CCCCCHh-----HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCCh
Q 042098 303 NEAIMLFNRMKYA-GVNPDKI-----TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNE 376 (566)
Q Consensus 303 ~~a~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 376 (566)
+.|+.-++.+... +-.|... ...-.+.++...|+..++...++.+...+.... .
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P--------------------~ 327 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP--------------------D 327 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC--------------------H
Confidence 4455555555442 2224322 223456678899999999999999998875432 4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC-------
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEG-----GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG------- 444 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------- 444 (566)
.+-..+.++|...+++++|+.+|+++.... .+..... ...|.-++...+++++|..+++.+.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~--~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD--ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH--HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 578899999999999999999999986632 1133332 24778889999999999999999987311
Q ss_pred ---CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 445 ---LIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 445 ---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
-.|+ ...+..++..+...|+..+|++.++++... .+......+...+...|+..+|++.++.+..++|++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 1233 345666788899999999999999999764 57778888889999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+....+.++...|+|++|.++.+.+.+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999999999999999988866643
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.4e-15 Score=149.01 Aligned_cols=505 Identities=11% Similarity=0.032 Sum_probs=318.2
Q ss_pred CCchHHHHHHHHH--HhCCCCChHHHHHhh--cCCCchhHHHHhhcCCCCCcchHHHHHHH--HHcC---CCChhHHHHH
Q 042098 36 STKTVQQIHTQML--INFIQKPNFLLIRII--DLKDFNYASLLFHQISRPNEYAFNVMIRG--LTTA---WQKYSHSLKL 106 (566)
Q Consensus 36 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~ll~~--~~~~---~~~~~~a~~~ 106 (566)
+....-.++.... .....||+.+.-.++ ++|+.+.|+..|....+-|+..-++++.. +..+ ...+..++.+
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3333344444432 223345555444444 88888888888877765554444443321 1111 1234555555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 042098 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED--DHVSHSLITMYARCGKLDSARKVFDEIRER- 183 (566)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 183 (566)
+...-... .-|+...+.|..-+.-.|++..+..+...++.....-. ...|--+.++|-..|++++|...|.+..+.
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 55554432 23666677777777777888888888777776542111 223445677777788888888877766642
Q ss_pred -C--hhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC----CchhHHHHHHHHHHhCCCchHH
Q 042098 184 -D--LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG----DLVLGKWVEGFVVKNKMDLNFY 256 (566)
Q Consensus 184 -~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~ 256 (566)
+ +..+--+...+.+.|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..++....+.- +.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHH
Confidence 2 334455667777788888888888777663 2223456666666665553 3455555555555544 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAM--------VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA---GVNPDK---- 321 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~---- 321 (566)
.|-.+...+.... ...++.+|... ....+...|.+.......|++.+|...|...... ...++.
T Consensus 416 a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 5555555554433 22223333332 2245566777777777778888877777776544 122222
Q ss_pred -h-HHHHHHHHHhccCChhHHHHHHHHHHHhCCC-Cccc---------cCCHHHHHHHHccCC---CCChhHHHHHHHHH
Q 042098 322 -I-TLIGVLSACASIGALDLGKWVDKYASQRGLR-HDIF---------CGSIDDALKVFEDMP---VTNEVSWNAMISAL 386 (566)
Q Consensus 322 -~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~---------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 386 (566)
. +--.+....-..++.+.|...++.+.+.... .|.. .++..+|..++.... ..++..++-+...+
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 1 2222333445556777777777777653321 2211 366677777777665 45666777777788
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh------------hCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH------------AGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~------------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
.+...+..|.+-|....+.-. ..+|+.+...|.+.|.+ .+..++|+++|....+. -+-|...-+.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~-~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANG 651 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTS-TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANG 651 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhc-cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccc
Confidence 888888888887777665431 34676666666665443 24467788888877753 2335677788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHHHHHHHHhCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 530 (566)
+.-.++..|++.+|..+|.++.+. ....+|..+..+|...|++..|+++|+...+.. .+++.+...|++++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 888899999999999999988764 356788889999999999999999999988763 4577888899999999999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 042098 531 WDDSAKMRALMREKGVS 547 (566)
Q Consensus 531 ~~~A~~~~~~~~~~g~~ 547 (566)
+.+|.+.+.......+.
T Consensus 732 ~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999988777665443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.3e-14 Score=129.37 Aligned_cols=308 Identities=12% Similarity=0.117 Sum_probs=177.2
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhh------cCCCchh-HHHHhhcCC---CCCcchHHHHHHHHH
Q 042098 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII------DLKDFNY-ASLLFHQIS---RPNEYAFNVMIRGLT 94 (566)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~g~~~~-A~~~~~~~~---~~~~~~~~~ll~~~~ 94 (566)
..++.+++. +..++.--+++.|.+.|.+-...+--.|+ ...++-. -++.|-.|. +.+..+|
T Consensus 120 ~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-------- 190 (625)
T KOG4422|consen 120 NNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-------- 190 (625)
T ss_pred hHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------
Confidence 344444444 66777778899999988876666555544 2222221 123333332 1222222
Q ss_pred cCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 042098 95 TAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSAR 174 (566)
Q Consensus 95 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 174 (566)
+. |.. |.-+++.. +-+..||.++|.++|+--..+.|.+++++-.+...+.+..++|.+|.+-.-..+ .
T Consensus 191 K~-G~v--AdL~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 KS-GAV--ADLLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred cc-ccH--HHHHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 11 222 22122221 224455555555555555555555555555555455555555555544332222 2
Q ss_pred HHHhccC----CCChhHHHHHHHHHHhcCChhH----HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchh-HHHHHHH
Q 042098 175 KVFDEIR----ERDLVSWNSMISGYSKMGYAKE----AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL-GKWVEGF 245 (566)
Q Consensus 175 ~~~~~~~----~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 245 (566)
+++.+|. .||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..+|..+++.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 3333332 3555566666666555555443 34566667777777777777776666666555533 3333333
Q ss_pred HHHh----CC---C-chHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---hhHHHHHHHHHHHcCCHHHHH
Q 042098 246 VVKN----KM---D-LNFYMGSALIDMYGKCGALVPARRVFDAMVN--------KD---VVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 246 ~~~~----~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~ 306 (566)
+... .+ . .+...+..-+..|.+..+.+-|..+-.-... ++ ..-|..+....|+....+..+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 11 1 1333455556666666666666655444321 11 224566777888888999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 042098 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLR 353 (566)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 353 (566)
..|+.|.-.-+-|+..+...++.+....|.++-..+++..+...|..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 99999998888899999999999999999999998898888877654
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.5e-14 Score=130.53 Aligned_cols=432 Identities=16% Similarity=0.157 Sum_probs=305.3
Q ss_pred cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH--ccCChhH-HHHHHHHHHHhCCCCchhHHHH
Q 042098 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCA--NLLALNH-GVSVHSSVFKIGLDEDDHVSHS 159 (566)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~ 159 (566)
+.+=|.|+...+ + |...++.-+|+.|.+.|+..+...--.|+...+ +..++.- -.+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmIS-~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMIS-S-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHHHh-h-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 445667766554 4 789999999999999998887777666665443 3333332 223344444444 2333343
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhH
Q 042098 160 LITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLG 239 (566)
Q Consensus 160 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 239 (566)
+.|++.+ ++-+...++..+|.++|.++|+--..++|.+++++-.....+.+..+||.+|.+.+-. ..
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 3455444 5555555677899999999999999999999999999888999999999999876543 33
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHH----HhcC----CCCChhHHHHHHHHHHHcCCHHH-HHHHHH
Q 042098 240 KWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV----FDAM----VNKDVVTWNAMITAYAQNGLSNE-AIMLFN 310 (566)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~----~~~~~~~~~~li~~~~~~~~~~~-a~~~~~ 310 (566)
+.+..+|....+.||..|+|+++.+..+.|+++.|.+. +.+| .+|...+|..+|..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 88999999999999999999999999999998876554 4444 56889999999999999888754 445555
Q ss_pred HHHH----CCCCC----CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHH
Q 042098 311 RMKY----AGVNP----DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAM 382 (566)
Q Consensus 311 ~m~~----~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 382 (566)
++.. +.++| |..-|...+..|.+..+.+.|..+........-. +.. |.. .....-|..+
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-~~i-g~~-----------~~~~fYyr~~ 404 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW-KFI-GPD-----------QHRNFYYRKF 404 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hhc-ChH-----------HHHHHHHHHH
Confidence 5533 33443 3445677888999999999999888766542211 000 000 0123457778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 462 (566)
....|+....+.-+.+|+.|.-.- .-|+..+...++++....|.++-.-++|..++.- |..-+...-.-+...+++.
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~--y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSA--YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccce--ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcC
Confidence 888899999999999999998776 6799999999999998899998888888888765 6444444444455555554
Q ss_pred C-CH--------H-----HHHHHHHh-------CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCch-
Q 042098 463 G-HL--------S-----EAWDFVER-------MPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE---SSNSG- 516 (566)
Q Consensus 463 g-~~--------~-----~A~~~~~~-------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~- 516 (566)
+ .. . -|..+++. +.. .-.....+.++-.+.+.|..++|.+++..+.+.+ |..+.
T Consensus 482 k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 482 KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 4 11 0 11122221 111 1455667777778889999999999999987643 44433
Q ss_pred -hHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 517 -NYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 517 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
+...+.+.-.+.++...|...++.|...+...
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 34566777788889999999999887665543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1e-13 Score=137.69 Aligned_cols=475 Identities=12% Similarity=0.051 Sum_probs=323.2
Q ss_pred HHHHhh--cCCCchhHHHHhhcCC------CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 58 LLIRII--DLKDFNYASLLFHQIS------RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 58 ~~~~l~--~~g~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
+..+-+ ..|++-.|+.+|.... .||+.+ .+-..+.+. |+.+.|+..|....+.+. .++.++..|-..-
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl-~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKL-GMSEKALLAFERALQLDP-TCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhc-cchhhHHHHHHHHHhcCh-hhHHHHHHHHHHH
Confidence 444444 7899999999998842 234322 223455677 899999999999988642 2333333332222
Q ss_pred Hcc---CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------hhHHHHHHHHHHhcCC
Q 042098 130 ANL---LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD------LVSWNSMISGYSKMGY 200 (566)
Q Consensus 130 ~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~ 200 (566)
... ..+..+..++....... .-++.+.+.|.+.|.-.|++..++.+.+.+...+ ..+|--+.++|-..|+
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 222 34555666666655543 5678889999999999999999999988877532 3457788999999999
Q ss_pred hhHHHHHHHHhHHCCCCCCHHH--HHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC----CHHHH
Q 042098 201 AKEAVELFGRMREEEFLPDEIT--LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG----ALVPA 274 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A 274 (566)
+++|...|.+... ..|+..+ +.-+...+.+.|+++.+...|+.+.+..+. +..+...|...|...+ ..+.|
T Consensus 323 ~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 323 FEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999977655 4555544 345778899999999999999999887654 4455566777777765 56778
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 042098 275 RRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRM----KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
..++....++ |...|-.+...+- .++...++..|... ...+-.+.....+.+-......|+++.|...+...
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 8888777554 4556665555544 44555557666654 44555677888899998899999999999988887
Q ss_pred HHh---CCCCccc-----------------cCCHHHHHHHHccCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 348 SQR---GLRHDIF-----------------CGSIDDALKVFEDMP--VTN-EVSWNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 348 ~~~---~~~~~~~-----------------~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
... ...++.. .++.+.|.+.|..+. .|+ +..|-.+.......+...+|..++.+...
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 765 1222220 456677777777766 232 22333333233334667788888888776
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH------------hcCCHHHHHHHH
Q 042098 405 EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA------------RAGHLSEAWDFV 472 (566)
Q Consensus 405 ~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~------------~~g~~~~A~~~~ 472 (566)
.+ .-++..+..+...+.+...+..|..-|+...+.....+|..+.-+|.+.|. ..+..++|+++|
T Consensus 559 ~d---~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 559 ID---SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred cc---cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 53 233333444445666777777777766666555333455555555555443 223467888888
Q ss_pred HhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 473 ERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 473 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.++... -+...-|-+.-.++..|++..|..+|.+..+.-.+.+.+|..++.+|...|+|-.|.++|+...+.
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877643 344555666777788888888888888888877777888888888999999999998888877654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=3.3e-12 Score=121.65 Aligned_cols=497 Identities=11% Similarity=0.062 Sum_probs=377.3
Q ss_pred HHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 117 (566)
+++.....++ ++.++.+|.+.+...+.++|+.++....+ .+...| -++++- .-++.|..++++..+. ++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLw----lAlarL-etYenAkkvLNkaRe~-ipt 438 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLW----LALARL-ETYENAKKVLNKAREI-IPT 438 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHH----HHHHHH-HHHHHHHHHHHHHHhh-CCC
Confidence 3444444433 46777889999988888889999887643 233333 456666 6788899999998875 677
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhH
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSV----FKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE------RDLVS 187 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~ 187 (566)
+...|.+....=-..|+.+...+++..- ...|+..+...|-.=...|-+.|..-.+..+...... .--.|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 8888877766667788888888876654 4568888888888777788888887777777766543 22357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Q 042098 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267 (566)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (566)
|+.-...|.+.+.++-|..+|....+- ++-+...|......--..|..+....++......-+. ....|-.....+..
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHh
Confidence 888888999999999999999888763 3445566777766667778889999999988887664 44456666777888
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 042098 268 CGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 344 (566)
.|++..|..++.+..+ .+...|-+-+.....+.+++.|..+|.+.... .|+...|.--+..--..+..++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8999999999888744 25567888888889999999999999988774 567777766666666778899999998
Q ss_pred HHHHHhCCCCccc----------cCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 345 KYASQRGLRHDIF----------CGSIDDALKVFEDMP--VT-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 345 ~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
+...+.-...... .++++.|...|..-. .| .+..|-.|...--+.|++-.|..++++..-.+ +-
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---Pk 751 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---PK 751 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---CC
Confidence 8887754332222 567777887777665 33 45567777777778888889999998887765 45
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGAC 491 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 491 (566)
+...|...|+.-.+.|..+.|..++.+..+. ++.+...|..-|....+.++-.+....+.+.. .|+...-.+...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 6677888888888899999998888887764 33345677777777777777777777777765 4556666777888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEe
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~ 557 (566)
....+++.|.+.|.++.+.+|++..+|..+...+.+.|.-++-.+++....... |.-|..|..+
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 888999999999999999999999999999999999999999999998887643 3456666554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=5.9e-14 Score=127.63 Aligned_cols=440 Identities=10% Similarity=0.047 Sum_probs=257.4
Q ss_pred HHHHHHHhCCCCChH-----HHHHhhcCCCchhHHHHhhcC----CCCC----cchHHHHHHHHHcCCCChhHHHHHHHH
Q 042098 43 IHTQMLINFIQKPNF-----LLIRIIDLKDFNYASLLFHQI----SRPN----EYAFNVMIRGLTTAWQKYSHSLKLYYQ 109 (566)
Q Consensus 43 ~~~~~~~~~~~~~~~-----~~~~l~~~g~~~~A~~~~~~~----~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~ 109 (566)
-++.+.+...-|+.- +.|..++..++..|+++++.. +..+ +...|.+--.+.+. |+++.|+.-|+.
T Consensus 223 tyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~-gqy~dainsfdh 301 (840)
T KOG2003|consen 223 TYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA-GQYDDAINSFDH 301 (840)
T ss_pred hhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec-ccchhhHhhHHH
Confidence 344455554444433 334444778888888887654 2211 22344444466777 888888888888
Q ss_pred HHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHH--------HHHHHHHHhc---------C--CH
Q 042098 110 MKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVS--------HSLITMYARC---------G--KL 170 (566)
Q Consensus 110 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------~~li~~~~~~---------~--~~ 170 (566)
+.+. .|+-.+--.|+-++..-|+.++..+.|..|+.....+|..-| ..|++--.+. + +.
T Consensus 302 ~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~a 379 (840)
T KOG2003|consen 302 CMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADA 379 (840)
T ss_pred HHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhH
Confidence 8775 466555444444445568888888888888765433332211 1111111111 1 01
Q ss_pred HHHHHHHhcc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHhcCCCCchhHHHHHHH
Q 042098 171 DSARKVFDEI----RERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI-TLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 171 ~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
++++-.--.+ ..|+-.. ..+-.++.+.. ....|-.. .-..-..-+.+.|+++.|.+++..
T Consensus 380 ek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~---s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 380 EKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKA---SQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred HHHHHHHHHHhccccccchhc------------ccHHHHHHHHH---hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 1111111111 1111000 00001111110 00000000 000011223456666666666666
Q ss_pred HHHhCCCchHHHHHHHHHHHHh--cCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 042098 246 VVKNKMDLNFYMGSALIDMYGK--CGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD 320 (566)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 320 (566)
..+..-..-...-+.|...+.- -.++..|...-+..... |......-...-...|++++|.+.|++....+-...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 5555443333333333333332 23455555554444322 111111111222346777888888877766433222
Q ss_pred HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 042098 321 KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 321 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
...|++-+. +-.. |++++|+..|-.+. ..+..+...+...|-...+..+|++
T Consensus 525 ealfniglt-~e~~------------------------~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 525 EALFNIGLT-AEAL------------------------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHhccc-HHHh------------------------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 222222221 1222 55555555554432 4567777788888999999999999
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
++.+.... ++.|+..+.-|...|-+.|+-..|.+.+-.--+ -++-+..+...|..-|....-+++|+.+|++..-
T Consensus 580 ~~~q~~sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 580 LLMQANSL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHhccc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99887664 677888899999999999999999998765543 3445688888899999999999999999998643
Q ss_pred -CCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 478 -KVDEIVLGALLG-ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 478 -~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
+|+..-|..++. ++.+.|++++|..+++...+..|.+......|++++...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 699999999885 55578999999999999999999999999999999888774
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=3.3e-11 Score=114.99 Aligned_cols=484 Identities=11% Similarity=0.067 Sum_probs=372.0
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCCCChh
Q 042098 25 EKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAWQKYS 101 (566)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~ 101 (566)
..+-...-......+++-+.+...+. .+-...++.+|.+...|+.|..++++.++ .+...|-+....--.+ |+.+
T Consensus 380 v~LWKaAVelE~~~darilL~rAvec-cp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~n-gn~~ 457 (913)
T KOG0495|consen 380 VRLWKAAVELEEPEDARILLERAVEC-CPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEAN-GNVD 457 (913)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhc-CCHH
Confidence 33333444445556655555555544 35566788888899999999999988753 5667776665555566 8888
Q ss_pred HHHHHHHHH----HHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHH
Q 042098 102 HSLKLYYQM----KRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE--DDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 102 ~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
....++++- ...|+..+..-|-.=...|-..|..-.+..+....+..|++- -..+|+.-...|.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 888887664 457899999999888889999999999999999999888753 34688888899999999999999
Q ss_pred HHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 176 VFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 176 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
+|....+ .+...|...+..--..|..++...+|++.... ++-....|.......-..|++..|..++..+.+..+.
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9988776 35566777776666778899999999998875 3334455555556667779999999999999888776
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHH
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK-ITLIGVLS 329 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 329 (566)
+..++-+-+........++.|..+|.+.. .++...|.--+...--.+..++|++++++..+. -|+- ..|..+-.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 77788888889999999999999999874 356666766666666678899999999988775 4543 45555666
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHH
Q 042098 330 ACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
.+-+.++.+.|...+..-.+.-...-+. .|++-.|..+|+... +.+...|-..|+.-.+.|..+.|.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 7777788887776654433321111111 578999999999776 667889999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.++.+..+. ++.+...|.--|...-+.++-......+++ ..-|+.+.-++...+-...++++|.+.|.+..
T Consensus 774 ~lmakALQe---cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 774 LLMAKALQE---CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHh---CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 566677788778777777775555555543 34577888889999999999999999999987
Q ss_pred CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 477 EK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 477 ~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
.. | ...+|.-+...+..+|.-+.-.+++.+....+|.....|.....
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 64 3 45778888899999999999999999999999998887777653
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.2e-11 Score=110.06 Aligned_cols=445 Identities=12% Similarity=0.102 Sum_probs=296.4
Q ss_pred cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHH
Q 042098 64 DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVS 140 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 140 (566)
..+++..|+.+|+... ..+...|-.-+..-.++ +.+..|..+++.....=...|..=|. -+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHH
Confidence 5677778888888763 35666676677777777 88888888888887653232332222 2222234588888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHC-CC-
Q 042098 141 VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIR--ERDLVSWNSMISGYSKMGYAKEAVELFGRMREE-EF- 216 (566)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~- 216 (566)
+|+.-.+ .+|+...|++.|+.-.+.+.++.|..+++... .|++.+|--..+---++|+...|..+|+...+. |-
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 8887765 47888888888888888888888888888765 488888888888778888888888888876542 10
Q ss_pred CCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhcCCHHHHHHH--------HhcCCCC---
Q 042098 217 LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRV--------FDAMVNK--- 284 (566)
Q Consensus 217 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~--- 284 (566)
..+...|.+....-.+...++.|..+|...++.-+.. ....|..+...--+-|+-....+. ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1112233333333345566777888888777765543 234555555555566665444433 2222222
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHH---hccCChhHHHHHHHHHHHhCCCC
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI-------TLIGVLSAC---ASIGALDLGKWVDKYASQRGLRH 354 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~ 354 (566)
|-.+|--.+..--..|+.+...++|+..... ++|-.. .|..+-.+| ....+++.+.+++..+.+
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~----- 394 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD----- 394 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----
Confidence 3446666677777778888888888888765 444221 122221122 123344444444443333
Q ss_pred ccccCCHHHHHHHHccCCCCChhHHH----HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH
Q 042098 355 DIFCGSIDDALKVFEDMPVTNEVSWN----AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430 (566)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~ 430 (566)
+.+....||. .......++.+...|.+++...+. .-|-..+|...|..-.+.+.++
T Consensus 395 ----------------lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 395 ----------------LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred ----------------hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHhhHH
Confidence 1123334443 334445577889999999988775 5588999999999988999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD----EIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.+..+++.... ..|. ..+|......=...|+.+.|..+|+-..++|. ...|.+.|.--...|.++.|..+++
T Consensus 455 RcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 455 RCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 99999999885 3554 56777777777889999999999998887753 4557777777778899999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHH-----hCC-----------ChHHHHHHHHHHH
Q 042098 506 LLLEIESSNSGNYVISSKIFA-----NLK-----------MWDDSAKMRALMR 542 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 542 (566)
++++..+... +|...+..-. ..| +...|.++|+++.
T Consensus 532 rlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 532 RLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 9998766544 6666655444 334 5667888887764
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.3e-12 Score=116.35 Aligned_cols=398 Identities=14% Similarity=0.079 Sum_probs=256.7
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHh
Q 042098 89 MIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYAR 166 (566)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 166 (566)
...-+-++ |++++|++.|.+..+. .|| +..|.....+|...|+++++.+--...++. .|+ ...+..-..++-.
T Consensus 121 ~GN~~f~~-kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 121 KGNKFFRN-KKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhc-ccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 34456677 9999999999999885 677 777888888889999999998887777664 444 3356666677777
Q ss_pred cCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHH---------hHHC--CCCCCHHHHHHHHHHhcCCC-
Q 042098 167 CGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR---------MREE--EFLPDEITLVSVLGSCGDLG- 234 (566)
Q Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~~--~~~p~~~t~~~ll~~~~~~~- 234 (566)
.|++++|+.=+ |-.++..++....-.--+.+++.+ |.+. .+.|+.....+.+..+...-
T Consensus 196 lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888775321 222333333222222222222222 2211 23455444444444332110
Q ss_pred -----CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhc-CCHHHHHHHHhcC-------CCC---Chh------HHHHH
Q 042098 235 -----DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC-GALVPARRVFDAM-------VNK---DVV------TWNAM 292 (566)
Q Consensus 235 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~---~~~------~~~~l 292 (566)
..+++...+.. .+=..+... ..+.+|...+.+- ... |.. +....
T Consensus 267 ~~~~~~~~ksDa~l~~--------------~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAE--------------ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred ccccCCCccchhhHHH--------------HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 01111111111 010111110 0122222222221 111 111 11111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 372 (566)
..-+.-.|+...|..-|+........++.. |.-+-.+|....+.++....|....+....
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------------------- 392 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE------------------- 392 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-------------------
Confidence 222344688889999999998865444332 666666788888888777777776665443
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
|..+|.--.+.+.-.+++++|..=|++.+... +-+...|..+--+..+.+.+++++..|++.+++ ++.-+.+|
T Consensus 393 --n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy 465 (606)
T KOG0547|consen 393 --NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVY 465 (606)
T ss_pred --CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHH
Confidence 55567766777777889999999999998753 234566766666777889999999999999986 33347899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE-KVD---------EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+....++...+++++|.+.|+.... .|+ +..-..++..-.+ +|+..|..+++++++++|.....|..|+
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tla 544 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLA 544 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 9999999999999999999998754 122 2223333333333 8999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHH
Q 042098 523 KIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+..+.|+.++|+++|++..
T Consensus 545 q~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998764
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3.2e-15 Score=139.16 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CC---C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 260 ALIDMYGKCGALVPARRVFDAM-VN---K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~-~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
.+...+.+.|++++|+++++.. .. + |+..|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456666777777777777432 11 2 3444444555555677777777777777665422 33444444444 455
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
++++.|..+.....+. .++...+..++..+...++++++..+++++..... .+++..
T Consensus 91 ~~~~~A~~~~~~~~~~----------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 147 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER----------------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSAR 147 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HH
T ss_pred cccccccccccccccc----------------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHH
Confidence 5555555444332221 13455677788888999999999999999875431 356777
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
.|..+...+.+.|+.++|.+.+++..+. .|+ ......++..+...|+.+++.++++..... .++..|..+..++
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 8888888899999999999999999876 675 778888999999999999988887776543 4567788899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...|+.++|...++++.+..|+|+.+...++.++...|+.++|.++.+++.+
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999887654
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=4.7e-12 Score=125.23 Aligned_cols=321 Identities=12% Similarity=0.133 Sum_probs=204.7
Q ss_pred hcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHhcCCCCchhHHH
Q 042098 166 RCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLP-DEITLVSVLGSCGDLGDLVLGKW 241 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~ 241 (566)
-.|++++|.+++.++.+ .+...|..|...|-..|+.+++...+-.. ....| |...|..+.......|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34888888888888875 35678888888888888888887766433 33444 44566666666666667777777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh----h----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 242 VEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV----V----TWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
.|.++++..+.- ...+-.-+..|-+.|+...|..-|.++.+.++ . .--.+++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 766666665442 22222344555556666666555555533211 1 11111222333333333333333332
Q ss_pred HCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChH
Q 042098 314 YAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393 (566)
Q Consensus 314 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 393 (566)
.. +.. .-+...++.++..|.+...++
T Consensus 308 s~-----------------------------------~~~-------------------~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 308 SK-----------------------------------EKD-------------------EASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hh-----------------------------------ccc-------------------cccccHHHHHHHHHHHhHHHH
Confidence 21 000 012334666777777777777
Q ss_pred HHHHHHHHHHhCC-------------------------CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC
Q 042098 394 EALLLFERMSKEG-------------------------GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448 (566)
Q Consensus 394 ~A~~~~~~m~~~g-------------------------~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 448 (566)
.|......+.... ....++...+ .+.-++.+....+....+..-.... .+.|.
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~ 411 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVS 411 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChh
Confidence 7777776665521 0012222221 1222233333333333333333333 54443
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 449 --SEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 449 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...|.-+.++|.+.|++.+|+.++..+... .+...|--+..++...|.+++|.+.+++++...|++..+...|+.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 678999999999999999999999999876 346689999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCC
Q 042098 524 IFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~g 545 (566)
++.+.|+.++|.+++..+..-+
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999999877433
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.8e-10 Score=114.29 Aligned_cols=490 Identities=11% Similarity=0.054 Sum_probs=304.8
Q ss_pred cCCCCchHHHHHHHHHHhCC-CCChHHHHHhh--cCCCchhHHHHhhcC---CCCCcchHHHHHHHHHcCCCChhHHHHH
Q 042098 33 KCPSTKTVQQIHTQMLINFI-QKPNFLLIRII--DLKDFNYASLLFHQI---SRPNEYAFNVMIRGLTTAWQKYSHSLKL 106 (566)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 106 (566)
+-|+...+..|...+.+..+ .+-++-.-+.+ ..|+.+++...+-.. .+.|...|-.+-.-..+. |++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~-~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL-GNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-ccHHHHHHH
Confidence 33777777777777766643 23333333333 778888888776544 344556777777777777 888888888
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhccCC
Q 042098 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH----SLITMYARCGKLDSARKVFDEIRE 182 (566)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~~~~~~A~~~~~~~~~ 182 (566)
|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.. ..+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888763 3344444445566778888888888888888764422322222 334555666777888887776654
Q ss_pred -----CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC---------------------------CCHHHHHHHHHHh
Q 042098 183 -----RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL---------------------------PDEITLVSVLGSC 230 (566)
Q Consensus 183 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------p~~~t~~~ll~~~ 230 (566)
-+...++.++..|.+...++.+......+...... ++... .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 24557888888888888888888888777652111 12112 1222334
Q ss_pred cCCCCchhHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHH
Q 042098 231 GDLGDLVLGKWVEGFVVKNK--MDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----KDVVTWNAMITAYAQNGLSNE 304 (566)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 304 (566)
.+....+....+.....+.. +.-+...|..+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45566666666777777766 344556777888888888888888888888744 355678888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhC--------CCCccc-----------cCCHHHH
Q 042098 305 AIMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRG--------LRHDIF-----------CGSIDDA 364 (566)
Q Consensus 305 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~-----------~~~~~~A 364 (566)
|++.|+..... .|+.. .-..|-..+.+.|+.++|.+.+..+..-+ ..++.. .|+.++-
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 88888888764 44433 23334445667788888877777654211 011100 1111110
Q ss_pred HHH--------------------------------------------------------------------HccCCCCCh
Q 042098 365 LKV--------------------------------------------------------------------FEDMPVTNE 376 (566)
Q Consensus 365 ~~~--------------------------------------------------------------------~~~~~~~~~ 376 (566)
..+ +..+...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 000 000000111
Q ss_pred -hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---h
Q 042098 377 -VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND---VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---S 449 (566)
Q Consensus 377 -~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~ 449 (566)
..+.-++..+++.+++++|+.+...+........++. ..-...+.+++..+++..|...++.+...+++..+ .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2345677788899999999999888876542122332 12244556677889999999999988877555444 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-KVDE--IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..|+...+.+.+.++-.--.+.+..... +|+. ........-....+.+..|...+-++....|++|-+-..++-++.
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4556555666666654444444443332 2332 222222233455678888999999999999998887777766654
Q ss_pred h
Q 042098 527 N 527 (566)
Q Consensus 527 ~ 527 (566)
.
T Consensus 786 h 786 (895)
T KOG2076|consen 786 H 786 (895)
T ss_pred H
Confidence 3
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.2e-11 Score=120.57 Aligned_cols=286 Identities=10% Similarity=0.049 Sum_probs=155.2
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277 (566)
Q Consensus 198 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 277 (566)
.|+++.|.+.+....+..-.| ...|.....+....|+.+.+...+..+.+...+............+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777776666544332111 2223333444467777788877777776655444333333446778888899999888
Q ss_pred HhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 042098 278 FDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH 354 (566)
Q Consensus 278 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 354 (566)
++.+.+ | ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 888744 3 5667788888899999999999999999887654322 111110
Q ss_pred ccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHH
Q 042098 355 DIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRR 434 (566)
Q Consensus 355 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 434 (566)
..+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|..
T Consensus 229 ---------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 229 ---------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred ---------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 001112222222222333444444443322 22344445555555555555555555
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 435 LFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 435 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
++++..+. .|+.... ++.+....++.+++++..+...++ |+ ...+.++...|...+++++|.+.|+++.+..|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 55555432 2332111 122223335555555555554432 32 23344555555666666666666666665555
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
++ ..+..++.++.+.|+.++|.+++++.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53 23445556666666666666555544
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.4e-10 Score=104.21 Aligned_cols=468 Identities=11% Similarity=0.043 Sum_probs=327.2
Q ss_pred HHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCC--CCcc-hHHHHHHHHHcCCCChhHHHHHHHHHHHC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISR--PNEY-AFNVMIRGLTTAWQKYSHSLKLYYQMKRL 113 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 113 (566)
++|++....-. ..+..++-.++ ++..++.|+.+++.... |-+. .|.--+..--.- |++..|.++|+...+
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L-gNi~gaRqiferW~~- 169 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML-GNIAGARQIFERWME- 169 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-cccHHHHHHHHHHHc-
Confidence 45555554443 33444555555 89999999999998632 2222 333333333344 899999999999887
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhH
Q 042098 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE------RDLVS 187 (566)
Q Consensus 114 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~ 187 (566)
..|+...|.+.+..=.+...++.|..+++...-. .|++.+|-.....-.+.|....|..+|+...+ -+...
T Consensus 170 -w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~l 246 (677)
T KOG1915|consen 170 -WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEIL 246 (677)
T ss_pred -CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4899999999999999999999999999998764 59999999999999999999999999988765 13345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC--HHHHHHHHHHhcCCCCchhHHHHHH---HHHH----hCCCchHHHH
Q 042098 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPD--EITLVSVLGSCGDLGDLVLGKWVEG---FVVK----NKMDLNFYMG 258 (566)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~---~~~~----~~~~~~~~~~ 258 (566)
+.++..--.++..++.|.-+|+-..+. ++.+ ...|......--+-|+........- .+.- ..-+.|-.+|
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 666666666778899999999888764 3333 3445555555455566655554442 2111 1123355677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC-----hhHHHHHHH--------HHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKD-----VVTWNAMIT--------AYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~--------~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 325 (566)
-..+..-...|+.+...++|+.....- ...|.-.|- .=....+++.+.++|+...+. ++-...||.
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 778888888899999999999984421 112322221 123478899999999999883 444556776
Q ss_pred HHHHHHh----ccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 042098 326 GVLSACA----SIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFER 401 (566)
Q Consensus 326 ~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 401 (566)
-+=-.++ +..++..|..++...+.. .|...+|...|..-.+.++++....+|++
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~----------------------cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGK----------------------CPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcc----------------------CCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5433332 344555555555544432 46677888899999999999999999999
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC
Q 042098 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD 480 (566)
Q Consensus 402 m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 480 (566)
..+.+ +-+..+|......-...|+.+.|..+|+..+....+.-....+.+.|+.=...|.+++|..+++++.++ +-
T Consensus 463 fle~~---Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 463 FLEFS---PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhcC---hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 99975 456788888888888899999999999998876333334567888888888999999999999999875 56
Q ss_pred HHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhhC----CCCc--hhHHHHHHHHHhCCChHHHHHHH
Q 042098 481 EIVLGALLGACQ-----KQK-----------NTDVSQRVMQLLLEIE----SSNS--GNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 481 ~~~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~~----p~~~--~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
..+|-++..--. +.+ ....|..+|+++.... |... .....+.+.-...|...+...+-
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~ 619 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQ 619 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 667777664322 333 5678999999987652 3222 23334445555666666655555
Q ss_pred HHH
Q 042098 539 ALM 541 (566)
Q Consensus 539 ~~~ 541 (566)
.+|
T Consensus 620 s~m 622 (677)
T KOG1915|consen 620 SKM 622 (677)
T ss_pred Hhc
Confidence 554
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=4.3e-11 Score=118.03 Aligned_cols=366 Identities=10% Similarity=-0.062 Sum_probs=216.3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHH
Q 042098 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262 (566)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (566)
++..+|.+++.+-..+|+.+.|..++.+|+++|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67788888998888899999999999999999998888777666655 778888888899999999999999888777
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH-----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS-----NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
..+...|....+.+....-.--....+..+..+.....+. .-....+.+..-.|+......|...+ -....|.-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCC
Confidence 7666655532222211110000111223333221111111 11222233333334443333333222 22335666
Q ss_pred hHHHHHHHHHHHhCCCCc--cccCCHHHHHHHHccCCCCChh-HHHHHHHHHHH---cCChHHHHHHHHHHHhCC-----
Q 042098 338 DLGKWVDKYASQRGLRHD--IFCGSIDDALKVFEDMPVTNEV-SWNAMISALAF---NGRAHEALLLFERMSKEG----- 406 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~~~~~~A~~~~~~m~~~g----- 406 (566)
+...++...+........ .+..--..+.+.|.++..+... .|+ .-.+... .....+..++......+.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~l 436 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQL 436 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHH
Confidence 666666655544222211 1101112244555555533322 222 1122211 222233333322221110
Q ss_pred ---------CCCCC-------CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 042098 407 ---------GAARP-------NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWD 470 (566)
Q Consensus 407 ---------~~~~p-------~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 470 (566)
.+..| -...-+.++..|+..-+..++...-+..... -+ ...|..|++.++..++.+.|..
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~ 512 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALS 512 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHh
Confidence 00111 1122344555666666666666555444332 22 2789999999999999999999
Q ss_pred HHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 471 FVERMPEK-----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI---ESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 471 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+.++...+ .+..-+..+.+...+.+....+..+++++.+. .|....+...+.+.....|+-+...++.+-+.
T Consensus 513 ~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 513 FVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred chhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 99998753 45566777888888999999999999998874 24445667777888889999999999999999
Q ss_pred hCCCcc-CCceeEEEe
Q 042098 543 EKGVSK-TPGCSWIGI 557 (566)
Q Consensus 543 ~~g~~~-~~~~~~~~~ 557 (566)
..|+.. -|-+...+.
T Consensus 593 slgl~etgPl~~vhLr 608 (1088)
T KOG4318|consen 593 SLGLSETGPLWMVHLR 608 (1088)
T ss_pred HhhhhhcccceEEEee
Confidence 999887 343344443
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=9.8e-12 Score=113.42 Aligned_cols=430 Identities=12% Similarity=0.074 Sum_probs=278.1
Q ss_pred HHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHHccCChhHHHHHHHHHHHhCCCCch----hHHHHHHHHHH
Q 042098 91 RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPF-VFISCANLLALNHGVSVHSSVFKIGLDEDD----HVSHSLITMYA 165 (566)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~ 165 (566)
+-|..+ ....+|+..|+-+.+...-|+.-.... +-..+.+.+.+.+|.+.++..+..-...+. ...+.+--.+.
T Consensus 209 qqy~~n-dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 209 QQYEAN-DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHhhhh-HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345555 667888999998888877777655432 334566788899999998887765332222 23444445677
Q ss_pred hcCCHHHHHHHHhccCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHH
Q 042098 166 RCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVE 243 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 243 (566)
+.|+++.|+..|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..-|. ....+++.. ++
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi------~~~ddp~~~--ll 359 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI------KEKDDPDDN--LL 359 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc------CCcCCcchH--HH
Confidence 88999999999988765 676654444445556788999999999997655555544330 001111100 00
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHhcC--CHHHH----HHHHhcCCCCChh-------------HH--------HHHHHHH
Q 042098 244 GFVVKNKMDLNFYMGSALIDMYGKCG--ALVPA----RRVFDAMVNKDVV-------------TW--------NAMITAY 296 (566)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A----~~~~~~~~~~~~~-------------~~--------~~li~~~ 296 (566)
.+.++ +-.+.-..+.. +.+++ .++..-+..|+-. .+ -.-...+
T Consensus 360 ~eai~----------nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 360 NEAIK----------NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred HHHHh----------hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 00000 01111111111 11111 1122222222210 00 0112357
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHhccCChhHHHHHHHHHHHhCCCCcc----------ccCCHHHH
Q 042098 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGV--LSACASIGALDLGKWVDKYASQRGLRHDI----------FCGSIDDA 364 (566)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~A 364 (566)
.++|+++.|+++++-+.+.+-+.....-+.+ +.-+....++..|.++-+........... ..|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 8999999999999988766433332222222 22222233566666665555443211110 06999999
Q ss_pred HHHHccCCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 365 LKVFEDMPVTNEVSWNAMI---SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
.+.|++....|...-.+|. -.+-..|+.++|+.+|-++..- +..+...+..+...|....+...|++++-+...
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 9999998876655444433 3466789999999999888653 345677777888889999999999999977653
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM-PE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
-++.|+.+.+-|.+.|-+.|+-.+|.+.+-.- .- ..+..+..-|..-|....-+++++.+|+++.-+.|.-..+-.
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 23445889999999999999999999875443 22 246667777777788888899999999999988998777777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 520 ISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.++.++.+.|+|++|..+++...++
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8889999999999999999988764
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.6e-11 Score=120.37 Aligned_cols=287 Identities=16% Similarity=0.080 Sum_probs=165.8
Q ss_pred hcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH
Q 042098 197 KMGYAKEAVELFGRMREEEFLPDEI-TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275 (566)
Q Consensus 197 ~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 275 (566)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+....+..+.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 468888888888776553 34433 333445666777888888888888776655544444445577888899999999
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 042098 276 RVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 276 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 352 (566)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.++......-..+. .+..+.+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--~~~l~~~~~---------- 241 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--IGLLDEAMA---------- 241 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHHHHHH----------
Confidence 99888844 3 55678888889999999999999999999886543322211111111 000000000
Q ss_pred CCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH---HHHHHHHhhh
Q 042098 353 RHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF---IGVLSACVHA 426 (566)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~---~~ll~~~~~~ 426 (566)
....+...+.++..+ +.+...+..+...+...|+.++|.+++++..+.. ||.... ....-.....
T Consensus 242 -----~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 242 -----DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred -----hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCC
Confidence 011222223333333 2356667777777777777777777777777643 333211 1111112233
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-h--hHHHHHHHHHHhcCCHHHHHHHHHh--CC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPK-S--EHYSCMVDLYARAGHLSEAWDFVER--MP-EKVDEIVLGALLGACQKQKNTDVS 500 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A 500 (566)
++.+.+.+.++...+. .|+ + ....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|
T Consensus 313 ~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5555666666555543 233 2 3444555666666666666666662 22 235555555556666666666666
Q ss_pred HHHHHHHHh
Q 042098 501 QRVMQLLLE 509 (566)
Q Consensus 501 ~~~~~~~~~ 509 (566)
.+++++.+.
T Consensus 390 ~~~~~~~l~ 398 (409)
T TIGR00540 390 AAMRQDSLG 398 (409)
T ss_pred HHHHHHHHH
Confidence 666665543
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1.1e-11 Score=120.70 Aligned_cols=282 Identities=13% Similarity=0.062 Sum_probs=156.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCCHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSH--SLITMYARCGKLDSARK 175 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~~~~~A~~ 175 (566)
|++++|.+.+....+.+-.| ...|.....+..+.|+++.|.+.++++.+. .|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888777776655432111 122222233446777888888888777654 34443222 33566777788888888
Q ss_pred HHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 176 VFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 176 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
.++.+.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 7777765 25566777777788888888888888887766544221 111000
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 329 (566)
..+|..++.......+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .|+.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 01122233333344456666677777644 46777888888999999999999999888774 4443211 112
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 042098 330 ACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409 (566)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 409 (566)
+....++.+.+....+...+... .|...+.++...+.+.+++++|.+.|+...+.
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~P---------------------~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---- 357 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQHG---------------------DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---- 357 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 22222333333333332222111 13334444555555555555555555555542
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHh
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 439 (566)
.|+..++..+...+.+.|+.++|.+++++-
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 255555555555555555555555555443
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.7e-12 Score=124.30 Aligned_cols=284 Identities=12% Similarity=0.063 Sum_probs=176.6
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcCCHHH-HHHH
Q 042098 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM--DLNFYMGSALIDMYGKCGALVP-ARRV 277 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~~ 277 (566)
..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+..+ ..+..+|.+.+.-+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666663332 222233444455566666666666666665555432 1234445555443332211111 1111
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc
Q 042098 278 FDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF 357 (566)
Q Consensus 278 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 357 (566)
.+ +-...+.+|-++..+|.-+++.+.|++.|++..+. .|+
T Consensus 414 i~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~------------------------------------- 453 (638)
T KOG1126|consen 414 ID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR------------------------------------- 453 (638)
T ss_pred Hh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc-------------------------------------
Confidence 11 12224456666666666666666666666655542 221
Q ss_pred cCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
...+|+.+..-+.....+|.|...|+...... +-+-..|-.+...|.+.++++.|+-.|+
T Consensus 454 -----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 454 -----------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVD---PRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred -----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---chhhHHHHhhhhheeccchhhHHHHHHH
Confidence 34455555555666777888888888775421 1122344455667888888888888888
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 438 LMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 438 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
... .+.|. ......+...+.+.|+.++|++++++... ..++..--.-+..+...+++++|++.++++.+.-|++
T Consensus 514 kA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 514 KAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred hhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 776 45665 55667777888888888888888888653 2333333334556677789999999999999999999
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
..++..++.+|.+.|+.+.|+.-|.-+.+...+.
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999999999999998887777665543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-10 Score=106.56 Aligned_cols=356 Identities=13% Similarity=0.091 Sum_probs=235.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHH--HHHH
Q 042098 151 DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV--SVLG 228 (566)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~ 228 (566)
..|...+-...-.+-+.|....|+..|-.....-+..|.+.+....-..+.+.+ ..... |...|..-+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHH
Confidence 444444444444556667788888888777664444444443332222222222 22211 1221211111 2335
Q ss_pred HhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCH
Q 042098 229 SCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK------DVVTWNAMITAYAQNGLS 302 (566)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~ 302 (566)
++......+++.+-.+.....|++.+...-+....+.-...|+++|+.+|+++.+. |..+|+.++- .+..+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 55566677777777777777777776666666666667777888888888888654 4456666553 332221
Q ss_pred HHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHH
Q 042098 303 NEAIMLFNRMKY--AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380 (566)
Q Consensus 303 ~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (566)
. +.++.+-.. ...+| .|..++.+-|+-.++.+.|..+|++..+.+.. ...+|+
T Consensus 314 k--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~---------------------~~~aWT 368 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK---------------------YLSAWT 368 (559)
T ss_pred H--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc---------------------hhHHHH
Confidence 1 122221111 12333 35555566666666667777776666664432 456788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 459 (566)
.+..-|...++...|.+.|++..+-. +.|-..|-.|.++|.-.+...-|+-+|++... +.|+ +..|.+|..+|
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECY 442 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHH
Confidence 88888999999999999999998853 55778889999999999999999999988874 4665 78899999999
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhHHHHHHHHHhCCC
Q 042098 460 ARAGHLSEAWDFVERMPEKV--DEIVLGALLGACQKQKNTDVSQRVMQLLLEI-------ESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~ 530 (566)
.+.++.++|++.|.....-. +...+..|...+.+.++.++|.+.+++-++. +|....+..-|+.-+.+.++
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 99999999999998876543 4477888899999999999999999988873 24344455557788888899
Q ss_pred hHHHHHHHHHHHhC
Q 042098 531 WDDSAKMRALMREK 544 (566)
Q Consensus 531 ~~~A~~~~~~~~~~ 544 (566)
+++|..+-.+....
T Consensus 523 ~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 523 FDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHhcC
Confidence 98888866555443
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=1.5e-13 Score=127.91 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=99.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCHHHH-HHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCC
Q 042098 192 ISGYSKMGYAKEAVELFGRMREEEFLPDEITL-VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270 (566)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (566)
...+.+.|++++|++++++-.....+|+...| ..+...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444555555555555433322212332222 22222333344444444444444443322 22333444444 45555
Q ss_pred HHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHH
Q 042098 271 LVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348 (566)
Q Consensus 271 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 348 (566)
+++|.++++..-+ +++..+..++..+.+.++++++.++++.+....-.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------ 142 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA------------------------------ 142 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC------------------------------
Confidence 5555555544421 23344445555555555666555555554432110
Q ss_pred HhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhC
Q 042098 349 QRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAG 427 (566)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g 427 (566)
+++...|..+...+.+.|+.++|++.+++..+.. |+ ......++..+...|
T Consensus 143 ------------------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~----P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 143 ------------------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELD----PDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHCTTC
T ss_pred ------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCC
Confidence 1355667778888889999999999999998854 54 667778888888999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 428 LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+.+++.++++...+. . +.|+..+..+..+|...|+.++|+..+++... .| |+.....+..++...|+.++|.++.+
T Consensus 195 ~~~~~~~~l~~~~~~-~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 195 DYDEAREALKRLLKA-A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHHH-C-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988888888765 2 45567778889999999999999999988765 34 67777778899999999999999888
Q ss_pred HHHh
Q 042098 506 LLLE 509 (566)
Q Consensus 506 ~~~~ 509 (566)
++.+
T Consensus 273 ~~~~ 276 (280)
T PF13429_consen 273 QALR 276 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 8765
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.3e-10 Score=101.93 Aligned_cols=296 Identities=14% Similarity=0.116 Sum_probs=191.2
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC-Cch--HHHHHHHHHHHHhcCCHHHH
Q 042098 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKM-DLN--FYMGSALIDMYGKCGALVPA 274 (566)
Q Consensus 198 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A 274 (566)
+.++++|.++|-+|.+.. +.+..+-.++.+.+.+.|..+.|.+++..+.++.- +.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788888888886631 12333445666777778888888888777666432 211 22345677788899999999
Q ss_pred HHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 042098 275 RRVFDAMVNKD---VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351 (566)
Q Consensus 275 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 351 (566)
+.+|..+.+.+ ......|+..|-...++++|+++-+++...|-.+. +.-|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHH----------------------
Confidence 99999987632 34677788999999999999999999887654432 32221
Q ss_pred CCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHhhhCcHH
Q 042098 352 LRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF-IGVLSACVHAGLVD 430 (566)
Q Consensus 352 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~-~~ll~~~~~~g~~~ 430 (566)
..|..+...+....+.++|..++.+..+.+ |+.+-- ..+.+.....|+++
T Consensus 181 -------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~----~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 181 -------------------------QFYCELAQQALASSDVDRARELLKKALQAD----KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred -------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC----ccceehhhhhhHHHHhccchH
Confidence 124555566666677777888887777654 443332 33445566778888
Q ss_pred HHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
.|.+.++...+. +|+ +.+...|..+|...|+.++.+..+.++.+. +....-..+...-....-.+.|...+.+-
T Consensus 232 ~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 232 KAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred HHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 888888777765 444 566777778888888888887777766543 44444444444444444456666666666
Q ss_pred HhhCCCCchhHHHHHHHHH---hCCChHHHHHHHHHHHhCCCccCCcee
Q 042098 508 LEIESSNSGNYVISSKIFA---NLKMWDDSAKMRALMREKGVSKTPGCS 553 (566)
Q Consensus 508 ~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~~~~~~~ 553 (566)
++..|.- ..+..++.... ..|++.+-..+++.|....++..|.+.
T Consensus 309 l~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 309 LRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred HhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 6666663 33444444433 234566666777777766565555443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=5.1e-11 Score=116.87 Aligned_cols=188 Identities=10% Similarity=0.005 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFT-YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKV 176 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 176 (566)
|+++.|.+.+....+. .|+... +-....+..+.|+.+.|.+.++...+....+...+.-.....+...|+++.|...
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 6777777777665554 233322 2233344556677777777777765543222222333345666667777777777
Q ss_pred HhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc
Q 042098 177 FDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253 (566)
Q Consensus 177 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (566)
++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+.. .+..+-.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------------- 229 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 666654 2 4455666666777777777777777777665433221 1110000
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..+..++..-......+...+.+...++ .++..+..+...+...|+.++|.+++++..+.
T Consensus 230 --~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 230 --KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 0011111111222234455555665554 37778888888999999999999999999885
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=3e-10 Score=102.72 Aligned_cols=280 Identities=14% Similarity=0.074 Sum_probs=187.7
Q ss_pred cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 198 MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRV 277 (566)
Q Consensus 198 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 277 (566)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..||.+.+..++.++.+...+++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655443 3445566677778888888888888888877777788888888888999999999887
Q ss_pred HhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHHhccCChhHHHHHHHHH
Q 042098 278 FDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI-------TLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 278 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
+++..+ .++........+|.+.|++.....++..|.+.|+--++. ++..++.-+...+..+.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g-------- 247 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG-------- 247 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH--------
Confidence 777633 477788889999999999999999999999988655432 34444443333322222
Q ss_pred HHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 042098 348 SQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~ 424 (566)
-...+++.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+ ..|+ -..+-.+.
T Consensus 248 ----------------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~----L~~~~~~l 305 (400)
T COG3071 248 ----------------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPR----LCRLIPRL 305 (400)
T ss_pred ----------------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChh----HHHHHhhc
Confidence 222333333 2345555666666777777777777777776665 4444 12222345
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRV 503 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (566)
+.++.+.-++..+.-.+.++-. +..+.+|...|.+.+.|.+|...|+...+ +|+..+|+-+..++.+.|+.++|.+.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 5566666666665555543333 35666677777777777777777766544 37777777777777777777777777
Q ss_pred HHHHHhh
Q 042098 504 MQLLLEI 510 (566)
Q Consensus 504 ~~~~~~~ 510 (566)
.++.+..
T Consensus 384 r~e~L~~ 390 (400)
T COG3071 384 RREALLL 390 (400)
T ss_pred HHHHHHH
Confidence 7766643
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=8.1e-11 Score=116.15 Aligned_cols=439 Identities=12% Similarity=0.029 Sum_probs=237.4
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHS 159 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 159 (566)
.||.++|..+|.-||.. |+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .|.+.+|..
T Consensus 22 ~PnRvtyqsLiarYc~~-gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTK-GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHccc-CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 57778888888888887 8887777 7888877777777777888887777777776665 677778888
Q ss_pred HHHHHHhcCCHHH---HHHHHhccCC---C----Ch---------------hHHHHHHHHHHhcCChhHHHHHHHHhHHC
Q 042098 160 LITMYARCGKLDS---ARKVFDEIRE---R----DL---------------VSWNSMISGYSKMGYAKEAVELFGRMREE 214 (566)
Q Consensus 160 li~~~~~~~~~~~---A~~~~~~~~~---~----~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 214 (566)
|..+|.+.||+.. .++.++.+.. + .. ..-...+....-.|.++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 8888888887654 2221111110 0 00 00111222233334444444444433211
Q ss_pred -CCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHH
Q 042098 215 -EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNK----DVVTW 289 (566)
Q Consensus 215 -~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 289 (566)
... ++...++-+.... .-.+.+........-.++..++..++.+-...|+.+.|..++.+|.+. +..-|
T Consensus 169 a~~~----p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 169 AWNA----PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc----hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 011 1111244333322 222333333222222578888888888888889999999888888664 33334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHH--HhCCCCccccCCHHHHHHH
Q 042098 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS--QRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~~A~~~ 367 (566)
-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|....+........ ..++......| ..|.+.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg--~~a~k~ 317 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG--LLANKR 317 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc--cHhHHH
Confidence 455443 77888888888888888999998888887777776544322211100000 00000000011 111111
Q ss_pred Hcc---------CC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCc--
Q 042098 368 FED---------MP-------VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGL-- 428 (566)
Q Consensus 368 ~~~---------~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~-- 428 (566)
++. .+ ......|... .-....|+-+++.++...|..--....+ +...|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 111 00 1111223222 2223356666666666555432100222 23334444433332111
Q ss_pred --------------------HHHHHHHHHHh------------HHh---cCCCC-------ChhHHHHHHHHHHhcCCHH
Q 042098 429 --------------------VDEGRRLFDLM------------SSS---FGLIP-------KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 429 --------------------~~~A~~~~~~~------------~~~---~~~~p-------~~~~~~~l~~~~~~~g~~~ 466 (566)
..+..+..... ... ....| -...-+.++..+++.-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111000 000 00011 0123344555666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 467 EAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES---SNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+++..-++....--...|..|+.-+..+...+.|..+.++....+. -+-.-+..+.+.+.+.+...++.++++++.+
T Consensus 477 K~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 6665544444332336788889999999999999999888876531 2345677888999999999999999999887
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.5e-10 Score=105.88 Aligned_cols=265 Identities=12% Similarity=0.057 Sum_probs=206.1
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
.-+..+.....+-+...+++.+..++++.+.+. +...+-.-|.++...|+..+-..+=.+|.+. .+-...+|-++-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 334555566677777888999999998888654 4445666677888888888888888888775 234556777777
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 408 (566)
--|...|..++|++.+......... =...|-.....|.-.|..++|+..|....+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~---------------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--- 375 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT---------------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--- 375 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc---------------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh---
Confidence 7777778888888877766553322 2346888899999999999999999888764
Q ss_pred CCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------C
Q 042098 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--------V 479 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 479 (566)
++-...-+.-+.--|.+.++.+.|.++|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+..... +
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 22222333344556888999999999998877 56665 667777777777889999999999876531 2
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 480 -DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 480 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
-.++++.|..+|++.+.+++|+..+++++...|.+..++..++-+|...|+.+.|...|.+....
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999887644
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.6e-09 Score=98.17 Aligned_cols=287 Identities=13% Similarity=0.058 Sum_probs=196.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
|+|.+|.++..+-.+.+-.| ...|..-..+.-+.||.+.+-+++.+.-+..-.++..+.-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 88888888888877765443 23344455566677888888888888877644666667777778888888888888777
Q ss_pred hccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 178 DEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 178 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
+.+.+ .+........++|.+.|++.....++.+|.+.|.--+...- + ..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-----------le 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-----------LE 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------HH
Confidence 66553 56777888888888888888888888888887765443321 0 02
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
..++..+++-....+..+.-...+++.++ .++..-.+++.-+.+.|+.++|.++..+..+++..|+- .....+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 23445555555555555555566666643 46777777888889999999999999999888777661 122234
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
.+.++.+.-....+...+.- +.++..+.+|...|.+.+.+.+|...|+...+. .|
T Consensus 305 l~~~d~~~l~k~~e~~l~~h---------------------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~----~~ 359 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQH---------------------PEDPLLLSTLGRLALKNKLWGKASEALEAALKL----RP 359 (400)
T ss_pred cCCCCchHHHHHHHHHHHhC---------------------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CC
Confidence 44444443332222222211 123456777888888888888888888877764 48
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+..+|+.+..++.+.|+..+|.++.++....
T Consensus 360 s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 360 SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8888888888888888888888887776643
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1.6e-07 Score=90.32 Aligned_cols=463 Identities=13% Similarity=0.101 Sum_probs=266.3
Q ss_pred cCCCchhHHHHhhcCC-----CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHH
Q 042098 64 DLKDFNYASLLFHQIS-----RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHG 138 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 138 (566)
+.|++..-+..|+... ......|...|....+. +-++.++.+|+...+. ++..-+--+..++..+++++|
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHH
Confidence 6777777777777642 23455677777777666 7778888888887764 333356667777788888888
Q ss_pred HHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCH---HHHHHHHhccCC--CC--hhHHHHHHHHHHhcCChhHHH
Q 042098 139 VSVHSSVFKIG------LDEDDHVSHSLITMYARCGKL---DSARKVFDEIRE--RD--LVSWNSMISGYSKMGYAKEAV 205 (566)
Q Consensus 139 ~~~~~~~~~~g------~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~ 205 (566)
.+.+...+... .+.+...|.-+.+..++.-+. -....+++.+.. +| ...|++|..-|.+.|.+++|.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 87777765321 122222233222222222111 011112222211 11 124555555555555555555
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHh-------------------------------------------------------
Q 042098 206 ELFGRMREEEFLPDEITLVSVLGSC------------------------------------------------------- 230 (566)
Q Consensus 206 ~~~~~m~~~~~~p~~~t~~~ll~~~------------------------------------------------------- 230 (566)
++|++....-. +..-|+.+.++|
T Consensus 269 Dvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 55544322100 111111111111
Q ss_pred -----------cCCCCchhHHHHHHHHHHhC-C----CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-------
Q 042098 231 -----------GDLGDLVLGKWVEGFVVKNK-M----DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV------- 287 (566)
Q Consensus 231 -----------~~~~~~~~a~~~~~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------- 287 (566)
...|+..+....+.++++.- + ..-...|..+...|-..|+++.|..+|++..+.+-.
T Consensus 347 ~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 347 HNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred ccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 11223333344444443321 1 112335677888899999999999999998664332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------C-------CHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVN----------P-------DKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
+|......=.+..+++.|+.+++....-.-. | +...|...++.--..|-++....+++.+...
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444444445677888888888776432111 1 1223344444555667888888888888876
Q ss_pred CCC-Cccc---------cCCHHHHHHHHccCC----CCCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCCC
Q 042098 351 GLR-HDIF---------CGSIDDALKVFEDMP----VTNE-VSWNAMISALAF---NGRAHEALLLFERMSKEGGAARPN 412 (566)
Q Consensus 351 ~~~-~~~~---------~~~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~ 412 (566)
.+. |... ..-++++.++|+.-. .|++ ..|+..+.-+.+ ....+.|..+|++..+ | .+|.
T Consensus 507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~--Cpp~ 583 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G--CPPE 583 (835)
T ss_pred hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c--CCHH
Confidence 654 3222 466888889998765 4444 367776665554 2358999999999998 6 5565
Q ss_pred HHHHHHHHHH--HhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHH-
Q 042098 413 DVTFIGVLSA--CVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGA- 486 (566)
Q Consensus 413 ~~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~- 486 (566)
..-+..|+-+ --+.|....|+.++++... ++.+. ...|+..|.--...=-+..-..+|++..+. |+...-..
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 4332222222 2346889999999999765 45554 457777776444333333444455544432 44433322
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhhC-CC-CchhHHHHHHHHHhCCChHHHHHHH
Q 042098 487 --LLGACQKQKNTDVSQRVMQLLLEIE-SS-NSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 487 --l~~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+...-.+.|..++|..++....+.- |. +...|..+-..-.+.|+-+...+++
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3355667899999999999888875 43 5667888888888999965555544
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8e-09 Score=95.23 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYS 453 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~ 453 (566)
+.|..++..-|.-.++.++|...|++..+.+ |. ...|+.+..-|....+...|++-++..++ +.| |-..|-
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWY 402 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWY 402 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHh
Confidence 4466777778888899999999999999865 54 45677777789999999999999999984 455 467899
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.|..+|.-.+...-|+-.|++... +.|...|.+|..+|.+.++.++|+..|.++...+..+...+..|+++|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 999999999999999999999865 368899999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 042098 532 DDSAKMRALMRE 543 (566)
Q Consensus 532 ~~A~~~~~~~~~ 543 (566)
++|.+.+++..+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.5e-09 Score=94.99 Aligned_cols=201 Identities=18% Similarity=0.206 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-----HhccCChhHHHHHHHHHHHhCCCCccccCCHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA-----CASIGALDLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
+--.|+--|.+++++.+|..+.+++.. ..|-......++.+ .........|.+.+..+-.++..-|
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD------- 357 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD------- 357 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc-------
Confidence 344455567889999999988876532 12322222222221 1222234445555555555554433
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
++.--.++.+.+.-..++++++-.+..+... +..|...--.+..+.+..|.+.+|+++|-++...
T Consensus 358 ------------TIpGRQsmAs~fFL~~qFddVl~YlnSi~sY---F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 358 ------------TIPGRQSMASYFFLSFQFDDVLTYLNSIESY---FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred ------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 2333455666666677899999998888776 3344444445788999999999999999777532
Q ss_pred cCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 443 FGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL-LGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 443 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+ .|..+|. .|.++|.+.|.++-|++++-++....+..+...+ .+-|.+.+.+--|-+.|+.+...+|..
T Consensus 423 -~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 423 -EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred -hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 22 3455664 5668999999999999999988765455554444 488999999999999999999888753
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=3.5e-10 Score=102.58 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++..............+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH
Confidence 4456667778888899999999999888764 3455677777888888999999999999887642222234567778
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
...+...|++++|.+.+++.... .+...+..+...+...|++++|...++++.+..|.++..+..++.++...|+.++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 88899999999999999887653 3456778888999999999999999999999888888888899999999999999
Q ss_pred HHHHHHHHHhC
Q 042098 534 SAKMRALMREK 544 (566)
Q Consensus 534 A~~~~~~~~~~ 544 (566)
|..+.+.+.+.
T Consensus 222 a~~~~~~~~~~ 232 (234)
T TIGR02521 222 AQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhh
Confidence 99998877654
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=2.4e-10 Score=109.93 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=103.8
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC------CChhHHHHHHHHHHhcCChhHHHHH
Q 042098 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE------RDLVSWNSMISGYSKMGYAKEAVEL 207 (566)
Q Consensus 134 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~ 207 (566)
+..+|...|+.+... +.-+.++..-+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345566666663332 222335555666666666666666666666654 2555666655443321 12222
Q ss_pred HH-HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 042098 208 FG-RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDV 286 (566)
Q Consensus 208 ~~-~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 286 (566)
+- .+.+. -+-.+.||..+.+.|..+++.+.|...|++.++.++. ...+|+.+..-+.....+|.|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 21 12111 1223456666666666666666666666665554332 345566666666777788888888888877777
Q ss_pred hHHHH---HHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 287 VTWNA---MITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 287 ~~~~~---li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..||+ +...|.+.++++.|+-.|++..+-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 76665 445678888888888888887764
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=7e-09 Score=91.24 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=142.8
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc---hhHHHHH
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED---DHVSHSL 160 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l 160 (566)
..|-.-+..+.. +++++|.++|-+|.+.. +-+..+--+|-+.+.+.|..+.|.++++.+.++.--+. ......|
T Consensus 37 r~Yv~GlNfLLs--~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 37 RDYVKGLNFLLS--NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHhHHHHHhh--cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455555555544 57999999999998853 22444556677778889999999999998887421111 1234457
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHH----HHHHHHHHhcCC
Q 042098 161 ITMYARCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI----TLVSVLGSCGDL 233 (566)
Q Consensus 161 i~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~ 233 (566)
..-|...|-+|.|+.+|..+.+. -......|+..|-+..+|++|+++-+++.+.+..+... .|..+...+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 77888999999999999998873 24467788999999999999999999998766555432 344444444455
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHHHHHHHcCCHHHHHHHH
Q 042098 234 GDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVV----TWNAMITAYAQNGLSNEAIMLF 309 (566)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~ 309 (566)
.+++.|..++....+.++.- +..--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55555555555555544331 111123444455555555555555555443332 2334444555555555555555
Q ss_pred HHHHH
Q 042098 310 NRMKY 314 (566)
Q Consensus 310 ~~m~~ 314 (566)
..+.+
T Consensus 273 ~~~~~ 277 (389)
T COG2956 273 RRAME 277 (389)
T ss_pred HHHHH
Confidence 55444
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=5.4e-08 Score=92.61 Aligned_cols=441 Identities=10% Similarity=0.078 Sum_probs=263.5
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
++-+..+ +++++|.....++...+ +-|...+.+-+.++.+.+.+++|+.+.+.-.. ...+.+-+-.-.-+..+.+.
T Consensus 19 ln~~~~~-~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKN-GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccc-hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 4566677 89999999999998865 44666788888889999999999966543221 11111111111223356799
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 042098 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE-ITLVSVLGSCGDLGDLVLGKWVEGFVVK 248 (566)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (566)
.|+|+..++....-+..+...-...+.+.|++++|+++|+.+.+.+..-.. ..-..++.+-... .+. .+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HHHh
Confidence 999999999666666656666677888999999999999999776543222 2222233221110 010 1122
Q ss_pred hCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCh-----h-----HHHHHHHHHHHcCCHHHHHHH
Q 042098 249 NKMDL--NFYMGSALIDMYGKCGALVPARRVFDAM--------VNKDV-----V-----TWNAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 249 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~li~~~~~~~~~~~a~~~ 308 (566)
....| +-..+-.....+...|++.+|+++++.. .+.|. . .---+.-.+...|+..+|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 22222 1222223455677889999999999887 22111 1 112244466789999999999
Q ss_pred HHHHHHCCCCCCHhH----HHHHHHHHhccCChhH--HHHHHHHHHH--------------------hCCCCccccCCHH
Q 042098 309 FNRMKYAGVNPDKIT----LIGVLSACASIGALDL--GKWVDKYASQ--------------------RGLRHDIFCGSID 362 (566)
Q Consensus 309 ~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~--a~~~~~~~~~--------------------~~~~~~~~~~~~~ 362 (566)
+........ +|... .|.++ ++..-.++.. ....++.... ...-.....+..+
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999988753 34322 22222 2222222111 0111110000 0000000145556
Q ss_pred HHHHHHccCCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 363 DALKVFEDMPVTN-EVSWNAMISALA--FNGRAHEALLLFERMSKEGGAARPND--VTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 363 ~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
.+.++...++... ...+..++.... +...+.++.+++...-+.. |.. ......+......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~----p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH----PEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666666665222 334444443322 2335778888888877654 443 344455666788999999999998
Q ss_pred --------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHH----HHHHHHHHHhcCCHHHH
Q 042098 438 --------LMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-----KVDEIV----LGALLGACQKQKNTDVS 500 (566)
Q Consensus 438 --------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~----~~~l~~~~~~~~~~~~A 500 (566)
.+.+. +. .+.+..++...+.+.++-+-|..++.+... .+.... +.-+...-.+.|+.++|
T Consensus 401 ~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 44332 33 345666788888888887666666665432 122223 33333444567999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEe
Q 042098 501 QRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGI 557 (566)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~ 557 (566)
...++++++.+|++..+...++.+|+.. +.+.|..+-+ .+.+.++..-+.|
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k-----~L~p~~~l~~vdV 528 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK-----KLPPLKGLKAVDV 528 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh-----cCCCcccchhcCc
Confidence 9999999999999999999998888775 5666666543 3444444443333
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=2e-09 Score=104.58 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=149.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----------CChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN----------KDVV-TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 327 (566)
..|...|...|++++|..+++...+ +.+. ..+.+...|...+++++|..+|+++..- .
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-----------~ 271 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-----------R 271 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------H
Confidence 3355555555555555555554321 2222 2334667788889999999999888542 1
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHh---
Q 042098 328 LSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSK--- 404 (566)
Q Consensus 328 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--- 404 (566)
...+... . +.-..+++.|..+|++.|++++|...+++..+
T Consensus 272 e~~~G~~---h----------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 272 EEVFGED---H----------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred HHhcCCC---C----------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 1111100 0 00123455556666666666666655555432
Q ss_pred --CCCCCCCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 405 --EGGAARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFG--LIPK----SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 405 --~g~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.|. ..|... -++.+...|+..+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++
T Consensus 315 ~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 315 KLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred Hhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 110 123332 245555667777888888877776655432 2222 357888888899999999988888876
Q ss_pred CCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CC---CCchhHHHHHHHHHhCCChHHHHHHH
Q 042098 476 PEK----------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI----ES---SNSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 476 ~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
... .....++.+...|.+.++.++|.++|.+.... +| +...+|..|+.+|.+.|++++|.++.
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 541 22456778888899999999999999888754 34 44568889999999999999999998
Q ss_pred HHHH
Q 042098 539 ALMR 542 (566)
Q Consensus 539 ~~~~ 542 (566)
+.+.
T Consensus 474 ~~~~ 477 (508)
T KOG1840|consen 474 EKVL 477 (508)
T ss_pred HHHH
Confidence 8775
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=8.6e-09 Score=95.63 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=156.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 264 MYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
.+.-.|+.-.|..-|+..+.- ++..|--+...|....+.++....|++..+.+.. ++.+|..--....-+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e-- 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE-- 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH--
Confidence 345567888888888877442 3334777778889999999999999988876432 3344444333333333444
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
+|..-|+... +.++..|-.+..+..+.+++++++..|++.++. ++.-+..|+
T Consensus 412 ----------------------~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~ 466 (606)
T KOG0547|consen 412 ----------------------EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYN 466 (606)
T ss_pred ----------------------HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHH
Confidence 4444444333 336677877888888899999999999999887 666778899
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---------SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA 486 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 486 (566)
.....+...++++.|.+.|+..++. .|+ +.+-.+++-.- -.+++..|++++.+..+- | ....+..
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence 9999999999999999999988754 444 12222222222 238999999999998753 3 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
|...-.+.|+.++|+++|++...+-
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6.1e-12 Score=81.89 Aligned_cols=50 Identities=34% Similarity=0.587 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcC
Q 042098 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232 (566)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 232 (566)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1e-07 Score=86.82 Aligned_cols=282 Identities=9% Similarity=-0.034 Sum_probs=171.0
Q ss_pred CCCchhHHHHHHHHHHh-CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH---HHHHHHHHHcCCHHHHHHH
Q 042098 233 LGDLVLGKWVEGFVVKN-KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW---NAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 233 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~ 308 (566)
.++...+...+-.+... -++-++.....+..++...|+.++|...|++...-|+.+. ....-.+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 34444444444443333 3556777888899999999999999999998755443322 2223345677888888777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc----------cCCHHHHHHHHccCC---CCC
Q 042098 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----------CGSIDDALKVFEDMP---VTN 375 (566)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~~~---~~~ 375 (566)
...+.... .-....|-.-........+++.|..+-+..++.....-.. .++.++|.-.|+... +-+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 77775532 0111112112222334455666666655555543322111 466666666666554 346
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHh-hhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACV-HAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
...|.-|+.+|...|++.+|...-+...+. ++-+..+...+. ..|. ...--++|..+++... .+.|+ ....
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~---~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV 441 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRL---FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAV 441 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH---hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHH
Confidence 677777777777777777777766655443 334555555442 2222 2233456777776554 34565 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+.+...+...|+.++++.++++.... ||....+.|...+...+.+++|...|..+++.+|.+..+..-+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 66667777777777777777776543 7777777777777777777777777777777777776655554
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.7e-11 Score=79.79 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
||+.+||++|.+|++.|++++|.++|++|.+.| ++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g--~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG--IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHcC
Confidence 688889999999999999999999999999998 89999999999988874
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=2.1e-07 Score=91.49 Aligned_cols=393 Identities=15% Similarity=0.084 Sum_probs=259.4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHH-H
Q 042098 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEIT-L 223 (566)
Q Consensus 148 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~ 223 (566)
..++-|..+|..+.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+.+.-......|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34667888999999999999999999999998775 3556788888999999999999999987755433354444 3
Q ss_pred HHHHHHhcC-CCCchhHHHHHHHHHHhC----CCchHHHHHHHHHHHHhcC-----------CHHHHHHHHhcCCC---C
Q 042098 224 VSVLGSCGD-LGDLVLGKWVEGFVVKNK----MDLNFYMGSALIDMYGKCG-----------ALVPARRVFDAMVN---K 284 (566)
Q Consensus 224 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~---~ 284 (566)
-..-..|.+ .+..+++..+-.+++... -......|..+.-+|...- ...++...+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333344543 566777776666666521 1122333444444443321 13455666666633 2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCccc------
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ-RGLRHDIF------ 357 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~------ 357 (566)
|+...-.+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++..|..+.+.... .|......
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333334445777889999999999999886677888888888888889999999988876654 44322111
Q ss_pred ---cCCHHHHHHHHccCC-------------------------------CC-ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 042098 358 ---CGSIDDALKVFEDMP-------------------------------VT-NEVSWNAMISALAFNGRAHEALLLFERM 402 (566)
Q Consensus 358 ---~~~~~~A~~~~~~~~-------------------------------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m 402 (566)
.++.+++......+. +. .+.++..+.......+ ..+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-c
Confidence 345555544322211 00 1112222211111000 00000000 1
Q ss_pred HhCCCCCCCCH------HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 403 SKEGGAARPND------VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 403 ~~~g~~~~p~~------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
......-.|+. ..|......+.+.+..++|...+.+... +.|- ...|......+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11110011232 1233445567788889999888877764 3444 567777778889999999999998876
Q ss_pred CC--CCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 476 PE--KVDEIVLGALLGACQKQKNTDVSQR--VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 476 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.. ..++.+..++...+.+.|+...|.. ++..+++.+|.++.+|..++.++.+.|+.+.|.+-|+...+..-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 54 3467888999999999999888888 99999999999999999999999999999999999998876543
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6e-10 Score=97.78 Aligned_cols=160 Identities=10% Similarity=-0.024 Sum_probs=115.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
+.+.+-..++.++|.++|+...+.. +.+.....++...|.-.++.+.|..+++++.+- |+. ++..|+.+.-+|.-
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHh
Confidence 3444555566677777777766653 345555566666666667777777777777665 543 45666666666666
Q ss_pred cCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 462 AGHLSEAWDFVERMPEK---V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
.++++-++.-|++.... | -...|-.+.......||+..|.+.|+-++..+|++...++.|+..-.+.|+.++|+.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 77777777666665432 2 245677777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 042098 537 MRALMREKGV 546 (566)
Q Consensus 537 ~~~~~~~~g~ 546 (566)
+++.+.....
T Consensus 451 ll~~A~s~~P 460 (478)
T KOG1129|consen 451 LLNAAKSVMP 460 (478)
T ss_pred HHHHhhhhCc
Confidence 9988876543
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=4.6e-07 Score=80.94 Aligned_cols=441 Identities=10% Similarity=0.017 Sum_probs=243.3
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
+.-+..+ .++..|+.+++.-...+-.-...+---+..++...|++++|...+..+.... .++...+--|.-.+.-.|.
T Consensus 29 Ledfls~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 5555566 7788888887776543322111222223334456788888888877776633 4555555555555555677
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 042098 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (566)
+.+|..+-...++ ++..-..|...-.+.++-++-..+-+.+.+. ..--.++.+..-..-.+.+|..++..++..
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777665543 2222333444445556655555554444321 111122233333333456777777766654
Q ss_pred CCCchHHHHH-HHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 042098 250 KMDLNFYMGS-ALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLI 325 (566)
Q Consensus 250 ~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 325 (566)
..+ -...| .+.-+|.+..-++.+.++++.-.+ | ++.+.|.......+.=.-..|.+-.+++.+.+-.. ..+.
T Consensus 181 n~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~ 256 (557)
T KOG3785|consen 181 NPE--YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFI 256 (557)
T ss_pred Chh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhH
Confidence 432 11111 234456666666666666554422 2 23344444443333333333444444444432111 1111
Q ss_pred H-HHH-HHhccCChhHHHHHHHHHHHhCCCCcc-------ccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCC-----
Q 042098 326 G-VLS-ACASIGALDLGKWVDKYASQRGLRHDI-------FCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR----- 391 (566)
Q Consensus 326 ~-ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----- 391 (566)
. ++. -+.--..-+.|.+++-.+.+.-..... .++++.+|..+.+.+.+.++.-|-.-.-.++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 1 110 011112334555555444332211111 17999999999999987666544433333444443
Q ss_pred --hHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 042098 392 --AHEALLLFERMSKEGGAARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 392 --~~~A~~~~~~m~~~g~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 468 (566)
..-|...|+-.-..+ ..-|.. --.++..++.-..++++.+.+++.+..- -...|... -.+..+++..|.+.+|
T Consensus 337 eHlKiAqqffqlVG~Sa--~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESA--LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVEA 412 (557)
T ss_pred HHHHHHHHHHHHhcccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHHH
Confidence 344555555443333 222211 1223444555566788888888887753 33333333 3578999999999999
Q ss_pred HHHHHhCCCC--CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhC-CC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 469 WDFVERMPEK--VDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE-SS-NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 469 ~~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+++|-.+... .+..+|.+++ ++|.+.+..+.|..++ ++.+ |. ..+....+++.|.+.+.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 9999988764 4666776655 7888889988887654 4444 32 344556778899999999999999999888
Q ss_pred CCCccC
Q 042098 544 KGVSKT 549 (566)
Q Consensus 544 ~g~~~~ 549 (566)
.++.++
T Consensus 490 lDP~pE 495 (557)
T KOG3785|consen 490 LDPTPE 495 (557)
T ss_pred cCCCcc
Confidence 776553
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=1.9e-09 Score=90.46 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
+...|.-.|...|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhh
Confidence 46677888999999999999999999975 34457888899999999999999999999885 4666 67889999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 457 DLYARAGHLSEAWDFVERMPEKVD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
..+|..|++++|.+.|++....|. ..+|..+..+..+.|+.+.|...|++.++.+|+.+.....++......|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 999999999999999999887653 5788889989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 042098 533 DSAKMRALMREKGV 546 (566)
Q Consensus 533 ~A~~~~~~~~~~g~ 546 (566)
.|..+++....++.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887765
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=9e-09 Score=105.08 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=159.5
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 270 ALVPARRVFDAMVN--K-DVVTWNAMITAYA---------QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 270 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
++++|...|++..+ | +...|..+..++. ..+++++|...+++..+.+ +-+...+..+-..+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 34566666666643 2 2233444433332 2234677777777777653 12344555555556666666
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VTF 416 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t~ 416 (566)
++|...++...+... .+...+..+...+...|++++|...+++..+.. |+. ..+
T Consensus 355 ~~A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P~~~~~~ 409 (553)
T PRK12370 355 IVGSLLFKQANLLSP---------------------ISADIKYYYGWNLFMAGQLEEALQTINECLKLD----PTRAAAG 409 (553)
T ss_pred HHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCChhhH
Confidence 666666666655432 256678888889999999999999999998865 543 233
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHH-HHHHHHHHHh
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIV-LGALLGACQK 493 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~l~~~~~~ 493 (566)
..++..+...|++++|...++++.+. . .|+ +..+..+..+|...|++++|...+.++... |+... .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999988764 2 344 556777888899999999999999987654 44333 4445556666
Q ss_pred cCCHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 494 QKNTDVSQRVMQLLLEIE---SSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.| +.|...++++.+.. |.++.. +..+|.-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 47888777777653 444443 56677777887777766 7777654
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=1.2e-06 Score=84.75 Aligned_cols=431 Identities=12% Similarity=0.068 Sum_probs=253.0
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 164 (566)
.|-.++..|-. +++...+...+.+.+ +.+-...|.....-.+...|+.++|........+.. .-+.+.|..+.-.+
T Consensus 10 lF~~~lk~yE~--kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCYET--KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHH--HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 34445555533 567777777777766 233344555444444556677777777666555532 22445566555555
Q ss_pred HhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHH
Q 042098 165 ARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 241 (566)
-...++++|++.|..... .|...|.-+--.-.+.|+++.....-.++.+. .+-....|.....+..-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777776543 35556665555555667777766666666552 12234456666666666777777777
Q ss_pred HHHHHHHhCC-CchHHHHHHH------HHHHHhcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHHcCCHHHHHHHHHH
Q 042098 242 VEGFVVKNKM-DLNFYMGSAL------IDMYGKCGALVPARRVFDAMVNK--DVV-TWNAMITAYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 242 ~~~~~~~~~~-~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~ 311 (566)
+.+...+... .|+...+.-. .....+.|.+++|.+.+...... |-. .-..-...+.+.+++++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 7777666552 3333333222 23455678888888887766432 222 223345567889999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHh-cc-CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc
Q 042098 312 MKYAGVNPDKITLIGVLSACA-SI-GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389 (566)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~-~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 389 (566)
+... .||...|...+..+. +. +..+....++....+.-.... .|-....+. ....
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-----------------~p~Rlplsv----l~~e 301 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-----------------CPRRLPLSV----LNGE 301 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-----------------cchhccHHH----hCcc
Confidence 9886 577776665554443 22 222222234433333221111 111111111 1112
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH-HHHHHHHHhHHhcCC----------CCCh--hHHHHHH
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD-EGRRLFDLMSSSFGL----------IPKS--EHYSCMV 456 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~-~A~~~~~~~~~~~~~----------~p~~--~~~~~l~ 456 (566)
.-.+..-.++..+.+.| +++--..+.+|-.-=.+..-.+ -+..+...+... |. +|.. .++..++
T Consensus 302 el~~~vdkyL~~~l~Kg--~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKG--VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcC--CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHH
Confidence 22344556677777777 5544333333322100000011 111111111111 11 3443 3455677
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VDE-IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
..|-+.|+++.|+..++..... |+. ..|-.-.+.+...|+.++|...++++.+++-.|..+-..-+....++.+.++|
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence 8888999999999999998865 543 34555568889999999999999999999877776666788889999999999
Q ss_pred HHHHHHHHhCCC
Q 042098 535 AKMRALMREKGV 546 (566)
Q Consensus 535 ~~~~~~~~~~g~ 546 (566)
.++.....+-|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999988877765
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.3e-09 Score=94.21 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=189.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcc
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG-VLSACASI 334 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~ 334 (566)
-+.+..+|.+.|.+.+|.+.|+... .+.+.||-.|-+.|.+..++..|+.++.+-.+. .|..+||.. +...+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678899999999999999998874 367889999999999999999999999998874 677777654 33445555
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
++.+.+.++++...+.. +.++.+..++...|.-.++++-|+++|+++.+.| + -++.
T Consensus 304 ~~~~~a~~lYk~vlk~~---------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~-~spe 359 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH---------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--A-QSPE 359 (478)
T ss_pred HhHHHHHHHHHHHHhcC---------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--C-CChH
Confidence 66666666666655532 2367777788888999999999999999999998 3 5778
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGA 490 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 490 (566)
.|+.+.-+|...++++-++.-|++.... --.|+ ..+|..+.......||+.-|.+.|+-.... .....++.|.-.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 8888888999999999999999998875 44565 467888888888999999999999987754 457889999888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
-.+.|++++|..++..+....|+-.
T Consensus 439 ~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HhhcCchHHHHHHHHHhhhhCcccc
Confidence 8899999999999999999888743
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1e-08 Score=95.66 Aligned_cols=217 Identities=12% Similarity=-0.070 Sum_probs=126.3
Q ss_pred hcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhH
Q 042098 267 KCGALVPARRVFDAMVNK-------DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339 (566)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 339 (566)
..+..+.++.-+.++... ....|..+...+...|+.++|...|++..+.. +.+...|..+-..+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 345566676666666431 23457777778888888888888888887753 2235566666667777777777
Q ss_pred HHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 340 GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
|...++...+... .+..+|..+..++...|++++|.+.+++..+.. |+.......
T Consensus 117 A~~~~~~Al~l~P---------------------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~ 171 (296)
T PRK11189 117 AYEAFDSVLELDP---------------------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALW 171 (296)
T ss_pred HHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 6666666554332 245566677777777777777777777777643 433222222
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH--HHHHHHhCCCC------CCHHHHHHHHHHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE--AWDFVERMPEK------VDEIVLGALLGAC 491 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~------~~~~~~~~l~~~~ 491 (566)
...+...++.++|...++..... ..|+... ..+.. ...|+..+ +.+.+.+.... .....|..+...+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 22233456677777777654432 2333222 12222 23344332 23222222111 1234566777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+.|+.++|...|+++++.+|++
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCch
Confidence 77777777777777777777644
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=2e-08 Score=90.93 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
...+..+...+...|++++|...+++...... .......+..+...+...|++++|...+++.... .|+ ...+..
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~ 174 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLE 174 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHH
Confidence 33455566666777777777777777765320 1123345555666677777777777777776653 333 456667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
+...+...|++++|.+.+++.... .+...+..+...+...|+.+.|..+.+.+....
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777777777777777777765432 344555566677777777777777777665543
No 73
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=7.8e-08 Score=83.71 Aligned_cols=414 Identities=13% Similarity=0.078 Sum_probs=215.9
Q ss_pred CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHH
Q 042098 113 LGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNS 190 (566)
Q Consensus 113 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 190 (566)
.|+....--|++++..+.+..+++.|.+++..-.+.. +.+....+.|...|.+..++..|-.-++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444444557777777778888888888877766653 22556667777778888888888888887765 43333332
Q ss_pred -HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH--hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Q 042098 191 -MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS--CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK 267 (566)
Q Consensus 191 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 267 (566)
-...+.+.+.+.+|+++...|.+. |+...-..-+.+ .-..+|+..+..+.++....+ +..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 234566778888888888777542 222222222222 234556666666655443211 23333444455566
Q ss_pred cCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCC-hh
Q 042098 268 CGALVPARRVFDAMVN----KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKI----TLIGVLSACASIGA-LD 338 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~-~~ 338 (566)
.|+++.|.+-|....+ .....||..+.. .+.|+++.|+++..++.+.|++..+. ..+-.+++ ...|+ ..
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHH
Confidence 7777777777776644 234456555533 35566777777777777777652111 00000000 00000 00
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT-----NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
.+..-+-..........-..++.+.|.+.+..|++. |+.+...+.-. -..+++.+..+-++-+.... +-..
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n---PfP~ 310 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN---PFPP 310 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC---CCCh
Confidence 000000000000000000137778888888888733 44444333211 12345555555555555543 2345
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA-RAGHLSEAWDFVERMPEKVDEI--VLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~ 490 (566)
.||..++-.||+..-++.|-.++.+-....-.-.+...|+ |++++. -.-..++|++-++.+....... ....-++.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe 389 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE 389 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888888877754322100011233333 333333 3345666766665543221111 11111222
Q ss_pred HHhcCCH---HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 491 CQKQKNT---DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 491 ~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
-...++- ..|.+-+++.+++. ..+....+++|.+..++..+.++|..-.+
T Consensus 390 ~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 390 ARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2222221 12223333333332 12455667899999999999999987665
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=3.7e-07 Score=90.17 Aligned_cols=288 Identities=13% Similarity=0.055 Sum_probs=198.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhH-HHHHHHHHHhc---
Q 042098 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVS-WNSMISGYSKM--- 198 (566)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~--- 198 (566)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.. |+-.. |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345567889999999999775543 444566778888999999999999999999986 43344 44455554222
Q ss_pred --CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH
Q 042098 199 --GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL-VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275 (566)
Q Consensus 199 --~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 275 (566)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+......|+++ +++.|-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 25677788999887643 5444443333222222223 34566666777777653 4566667777555555555
Q ss_pred HHHhcCCC------------------CChh--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcc
Q 042098 276 RVFDAMVN------------------KDVV--TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASI 334 (566)
Q Consensus 276 ~~~~~~~~------------------~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 334 (566)
+++..... |... ++.-+...|...|++++|++++++..++ .|+ +..|..-...+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 55555310 1222 3455677888999999999999999987 566 44666667778889
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
|++.+|....+..+..... |-..-+..+..+.+.|++++|.+++......+ ..|...
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~---------------------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~--~~~~~~ 298 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA---------------------DRYINSKCAKYLLRAGRIEEAEKTASLFTRED--VDPLSN 298 (517)
T ss_pred CCHHHHHHHHHHHHhCChh---------------------hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC--CCcccC
Confidence 8888888887777765443 56666777888999999999999999998776 434332
Q ss_pred H--------HHHHHHHHhhhCcHHHHHHHHHHhHHhc
Q 042098 415 T--------FIGVLSACVHAGLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 415 t--------~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 443 (566)
. ..-...+|.+.|++..|+..|..+.+.+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 1334567899999999999998887653
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.2e-08 Score=104.28 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCcccc
Q 042098 285 DVVTWNAMITAYAQ-----NGLSNEAIMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFC 358 (566)
Q Consensus 285 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 358 (566)
+...|...+.+... .+..++|+.+|++..+. .|+.. .+..+..++...+. .|... ..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~-------------~g~~~--~~ 317 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQ-------------MGIFD--KQ 317 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHH-------------cCCcc--cc
Confidence 44455555554322 23467999999999875 55543 33333332221110 00000 01
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
+++++|...+++.. +.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555443 3467888889899999999999999999999864 33456778888889999999999999
Q ss_pred HHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 436 FDLMSSSFGLIPKS-EHYSCMVDLYARAGHLSEAWDFVERMPEK--VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 436 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
+++..+. .|+. ..+..++..+...|++++|+..+++.... |+ ...+..+..++...|+.++|...++++....
T Consensus 395 ~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 9999854 6653 33344555677789999999999987543 43 4456667788889999999999999998888
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
|.+......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 888888888888889888 488888877765
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=3.2e-06 Score=83.80 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=164.6
Q ss_pred CChHHHHHhh------cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHC-CC--------CCC
Q 042098 54 KPNFLLIRII------DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-GL--------KPD 118 (566)
Q Consensus 54 ~~~~~~~~l~------~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~--------~p~ 118 (566)
=|..+-.+++ ..|+.+.|.+-+..+. +..+|..|.+.|.+. ++.+-|.-.+..|... |. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT-~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKT-RRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhh-ccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 3444555555 7899999998887773 456899999999998 8888888777777542 21 222
Q ss_pred cccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-ChhHHHHHHHHHHh
Q 042098 119 NFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-DLVSWNSMISGYSK 197 (566)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 197 (566)
.+=..+.......|.+++|+.+|.+.++. ..|=..|-..|.+++|.++-+.-.+- =..||......+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 33333344456789999999999988764 23445677789999999987765442 22356666666666
Q ss_pred cCChhHHHHHHHHh----------HHCCC---------CCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHH
Q 042098 198 MGYAKEAVELFGRM----------REEEF---------LPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMG 258 (566)
Q Consensus 198 ~~~~~~a~~~~~~m----------~~~~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (566)
.++.+.|++.|++- ....+ ..|...|..-....-..|+.+.|..+|+...+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 78888888887753 22211 12344455555556677888888888877655 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
-+++...|-.|+.++|-++-++- .|....-.+.+.|-..|++.+|...|.+.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56777888888998888887654 356666778888888888888888887754
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=3.3e-06 Score=81.70 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
|+-.+...+-..|+++.|..+++.... ..|+ +..|-.=.+.+...|++++|..++++..+- +|...=.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 344455667777777777777777763 3666 456666667777777777777777776542 3332222233444
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC---C---c-hhHH--HHHHHHHhCCChHHHHHHHH
Q 042098 492 QKQKNTDVSQRVMQLLLEIESS---N---S-GNYV--ISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~---~---~-~~~~--~l~~~~~~~g~~~~A~~~~~ 539 (566)
.+.+..++|.++.....+.+-. + . -.|. .-+.+|.+.|++-.|++=+.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 4567777777777766654321 0 0 0111 22556667766666665443
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.5e-07 Score=87.92 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHH
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSAC 331 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 331 (566)
..|..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3456666677777888887777777633 2 4567777777888888888888888887764 343 34555566666
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
...|++++|...++...+.... +. ........+...+++++|...+++.... ..|
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~---------------------~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~ 197 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPN---------------------DP-YRALWLYLAESKLDPKQAKENLKQRYEK---LDK 197 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC---------------------CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh---CCc
Confidence 6777777777666666553321 22 1111222334567899999999776543 233
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC----CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI----PK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
+...+ .+. ....|+...+ +.++.+.+..... |+ ...|..+...+.+.|++++|+..|++.... |+..-+
T Consensus 198 ~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 198 EQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred cccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 33222 222 2234554443 3445554321111 22 357889999999999999999999998753 354444
Q ss_pred HH
Q 042098 485 GA 486 (566)
Q Consensus 485 ~~ 486 (566)
..
T Consensus 274 ~~ 275 (296)
T PRK11189 274 RY 275 (296)
T ss_pred HH
Confidence 43
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=4.5e-06 Score=82.47 Aligned_cols=407 Identities=11% Similarity=0.054 Sum_probs=261.9
Q ss_pred CChhHHHHH----HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 042098 98 QKYSHSLKL----YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA 173 (566)
Q Consensus 98 ~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A 173 (566)
.+.+++.-. +.++....+..|...|..+.-++...|+++.+-+.|++.....+ -....|..+...|..+|.-..|
T Consensus 298 e~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 298 ENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHH
Confidence 445555433 33333344667889999999999999999999999999876533 3556788888889999999999
Q ss_pred HHHHhccCC----CC-hhHHHHHHHHHH-hcCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHh--cCCCC----
Q 042098 174 RKVFDEIRE----RD-LVSWNSMISGYS-KMGYAKEAVELFGRMREE------EFLPDEITLVSVLGSC--GDLGD---- 235 (566)
Q Consensus 174 ~~~~~~~~~----~~-~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~--~~~~~---- 235 (566)
..++++-.. |+ ...+-..-..|. +.+..++++++-.+.... .+.|-...+..+..+. .....
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 999987654 22 233333333333 346777777777666541 1333332222222111 11111
Q ss_pred ---chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC----CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 042098 236 ---LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM----VNKDVVTWNAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 236 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~ 308 (566)
..++.+.+++..+.+.......| .+.--|+..++++.|.+...+. ...+...|..+.-.+...+++.+|+.+
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if-~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIF-YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 24566677777776654333322 2444577788999998887775 335788999999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHH---------------------hCCCCccccCCHHHHHH
Q 042098 309 FNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQ---------------------RGLRHDIFCGSIDDALK 366 (566)
Q Consensus 309 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~~~~~~~~A~~ 366 (566)
.+...+. .|+ ..-...-+..-...++.+++......+.. .|.... .++..+|.+
T Consensus 536 vd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la--~~q~~~a~s 611 (799)
T KOG4162|consen 536 VDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLA--LSQPTDAIS 611 (799)
T ss_pred HHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccC--cccccccch
Confidence 9887553 111 11000111111123333333322211111 111000 011111111
Q ss_pred HHcc-----------------CC------CCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 367 VFED-----------------MP------VTN------EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 367 ~~~~-----------------~~------~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
.... ++ .|+ ...|......+.+.+..++|...+.+..+. .+-....|.
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~~~~~ 688 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---DPLSASVYY 688 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhHHHHH
Confidence 1111 11 122 224566677888899999999999998775 344556666
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHH
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWD--FVERMPE--KVDEIVLGALLGACQ 492 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~~~~~~~~~l~~~~~ 492 (566)
.....+...|..++|.+.|.... -+.|+ +.+..++..++.+.|+..-|.. ++..+.. ..+...|-.+...+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 66677888999999999998776 56888 6788999999999998877777 8877764 257889999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+.||.+.|-+.|..+.++++.+|.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999876654
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.1e-07 Score=84.82 Aligned_cols=281 Identities=13% Similarity=0.006 Sum_probs=168.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHH
Q 042098 183 RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262 (566)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (566)
.++.....-..-+...+++.+..++.+...+. .++....+..-|..+...|+...-..+=..+++.-+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 45555666667777788899999988887664 3445555555566667777766666665666665443 455677777
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhH
Q 042098 263 DMYGKCGALVPARRVFDAMVNKD---VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 339 (566)
..|.-.|+.++|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+. -|...-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hl---------------- 381 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHL---------------- 381 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcc----------------
Confidence 77888899999999998874433 347888888899899999988888766542 111000
Q ss_pred HHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 340 GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
| +--+.--|.+.+....|.++|.+...- .+-|+...+-+
T Consensus 382 ----------------------------------P----~LYlgmey~~t~n~kLAe~Ff~~A~ai---~P~Dplv~~El 420 (611)
T KOG1173|consen 382 ----------------------------------P----SLYLGMEYMRTNNLKLAEKFFKQALAI---APSDPLVLHEL 420 (611)
T ss_pred ----------------------------------h----HHHHHHHHHHhccHHHHHHHHHHHHhc---CCCcchhhhhh
Confidence 0 111122344455555666666555542 12233334444
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhc-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSF-GLIP----KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQ 492 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 492 (566)
.-.....+.+.+|..+|+.....- .+.+ ...+++.|..+|-+.+.+++|+..+++... +.+..++.++.-.+.
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 333444555666666655544210 0011 123455666666666666666666666543 245566666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
..|+++.|...|.+++.+.|++..+-..|..+
T Consensus 501 llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 66777777777777776666665555555443
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=3.1e-08 Score=90.96 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhccCCh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL-SACASIGAL 337 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~ 337 (566)
..+.+++...|+.+.+..-+..-..|.......+...+...++-+.++.-+++....+..++..++..+. ..+...|+
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~- 117 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD- 117 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH-
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC-
Confidence 4456666777777665555544444555555444433333344445555444443333222222222222 23344444
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
+++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ .|. +..
T Consensus 118 -----------------------~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~-~l~ 167 (290)
T PF04733_consen 118 -----------------------YEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDS-ILT 167 (290)
T ss_dssp -----------------------HHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCH-HHH
T ss_pred -----------------------HHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcH-HHH
Confidence 44444444433 356667777888999999999999999998743 443 444
Q ss_pred HHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 418 GVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 418 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
.+..++.. .+.+.+|..+|+++... +.+++.+.+.+..+....|++++|.+++++.... .++.+...++.+.
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45554432 23688999999998764 4567888888889999999999999988887654 4556666677777
Q ss_pred HhcCCH-HHHHHHHHHHHhhCCCCc
Q 042098 492 QKQKNT-DVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 492 ~~~~~~-~~A~~~~~~~~~~~p~~~ 515 (566)
...|+. +.+.+.+.++....|.++
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCCh
Confidence 777777 677888888888888865
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=4.7e-05 Score=77.55 Aligned_cols=243 Identities=8% Similarity=0.024 Sum_probs=149.0
Q ss_pred HHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCC--CCcchHHHHHHHHHcCCCChhHHHHH
Q 042098 29 SLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISR--PNEYAFNVMIRGLTTAWQKYSHSLKL 106 (566)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~ 106 (566)
..++.||.+ +.+.-...+.|..||...+-.-+..-+++.+.++...+.+ +....++.+...+... +..+.+..+
T Consensus 489 ~cfAE~Gqf---~KiilY~kKvGyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~-N~iQq~TSF 564 (1666)
T KOG0985|consen 489 QCFAETGQF---KKIILYAKKVGYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEEPLADIEQIVDLFMEL-NLIQQCTSF 564 (1666)
T ss_pred HHHHHhcch---hHHHHHHHHcCCCccHHHHHHHHHccChhHHHHHHHHhhccCCCcccHHHHHHHHHHH-HhhhhhHHH
Confidence 344444444 6677888899999999988888877999999999988864 5566778888888777 778888887
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCh
Q 042098 107 YYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDL 185 (566)
Q Consensus 107 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~ 185 (566)
+-...+. ..|+....-+-+----..+ |-++-+.+...+. -+..-+..+.+.|.++|-...|++.+..+.. +..
T Consensus 565 LLdaLK~-~~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~ 638 (1666)
T KOG0985|consen 565 LLDALKL-NSPDEGHLQTRLLEMNLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRV 638 (1666)
T ss_pred HHHHhcC-CChhhhhHHHHHHHHHhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHH
Confidence 7776654 3555443322221111222 2233333333322 1222366788889999999999988887764 111
Q ss_pred hHHHH-----HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-----------
Q 042098 186 VSWNS-----MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN----------- 249 (566)
Q Consensus 186 ~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----------- 249 (566)
..... .+-.|...-.++.+++.++.|...++..|..+...+..-|...=..+...++|+.....
T Consensus 639 vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 639 VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 11111 12234445567788888888887777777666655555444433333333444332221
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
++.-|..+.-..|.+.++.|++.+.+++.++-
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 12233344456788888888888887776654
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=3.4e-06 Score=75.24 Aligned_cols=310 Identities=15% Similarity=0.090 Sum_probs=165.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHH---HHHHhcCChhHHHHHHHHhHHCCCCCCHHHHH-HHHHHhcCCC
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMI---SGYSKMGYAKEAVELFGRMREEEFLPDEITLV-SVLGSCGDLG 234 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~ 234 (566)
-+-..+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+.+..+ .+||-..-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 4455566678888888888888877777776664 467778888888887777766 566643221 1123445667
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
.++.|..-|..+++..+.-+. ...++.+.--.++-+. ....+..+...|+...|+..+..+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 777777777777766543211 1111111111111111 11223344556777777777777776
Q ss_pred CCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHH
Q 042098 315 AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHE 394 (566)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 394 (566)
-. +-|...+..-..+|...|.+..|..=++...+.. ..++..+-.+-..+...|+.+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---------------------~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---------------------QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---------------------ccchHHHHHHHHHHHhhhhHHH
Confidence 41 2244444445556666666665554433333321 2355566666677778888888
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHH-------------HHHhhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHH
Q 042098 395 ALLLFERMSKEGGAARPNDVTFIGVL-------------SACVHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMV 456 (566)
Q Consensus 395 A~~~~~~m~~~g~~~~p~~~t~~~ll-------------~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~ 456 (566)
++..+++..+. .||....-..- ......+++.++.+..+...+. .|. ...+..+-
T Consensus 242 sL~~iRECLKl----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 242 SLKEIRECLKL----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLC 314 (504)
T ss_pred HHHHHHHHHcc----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheee
Confidence 88888888774 36653211110 0112233444444444444332 222 12233333
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.++...|++.+|++...++.+- |+ +.++.--..+|.-...++.|+.-|+.+.+.+++|..
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 4444555555555555554432 22 444444444555555555555555555555555443
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.5e-06 Score=85.96 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQ 492 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~ 492 (566)
+..+...|...|++++|.++++..+.. .|+ +..|..-.+.|-+.|++.+|.+.++....- -|...=+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344445566666666666666666643 555 556666666666666666666666665542 22222222345555
Q ss_pred hcCCHHHHHHHHHHHHhhC--CCC-------chhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIE--SSN-------SGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+.|+.++|.+.+....+.+ |.. .......+.+|.+.|++..|++-+..+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666665543 111 111123466677777777776655544
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=3.4e-07 Score=77.16 Aligned_cols=164 Identities=11% Similarity=0.021 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|..|++++|.+.|++........--..+|..+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 3445555555555666666666666555532 2233444555555555556666666665555542222224455555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
.-+..+.|+++.|.+.|++.... ....+...+.....+.|++..|...+++.....+.+.......+++-.+.|+.+.
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 55555666666666665555432 2334444555555555666666666666555555555555555555555666655
Q ss_pred HHHHHHHHH
Q 042098 534 SAKMRALMR 542 (566)
Q Consensus 534 A~~~~~~~~ 542 (566)
+.++=.++.
T Consensus 226 a~~Y~~qL~ 234 (250)
T COG3063 226 AQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHH
Confidence 555544443
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.97 E-value=1.8e-05 Score=76.73 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP----- 447 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p----- 447 (566)
..|..+.+.|-..|+.+.|..+|++..+-. . +.. .+|..-...-.++.+++.|.++.+..... .-.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~--y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~y 463 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVP--Y-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYY 463 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--c-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhh
Confidence 468888999999999999999999887643 2 222 23333334444567788888888776543 1111
Q ss_pred ------------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-
Q 042098 448 ------------KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES- 512 (566)
Q Consensus 448 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p- 512 (566)
+...|..+++.--..|-++....+|+++.+- .++...-....-+..+.-++++.+++++-+.+.|
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1124555566666778888888888888752 3333333344445566778999999999988863
Q ss_pred -CCchhHHHHHHHH---HhCCChHHHHHHHHHHHhCCCcc
Q 042098 513 -SNSGNYVISSKIF---ANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 513 -~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
.-..+|+.....+ ......+.|+.+|+++.+ |..+
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 3334444433332 233578999999999998 5543
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=0.00012 Score=80.80 Aligned_cols=370 Identities=11% Similarity=-0.005 Sum_probs=224.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhH--HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCc
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVS--WNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL 236 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 236 (566)
.....+...|++.+|..........+... ...........|+++.+..+++.+.......+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33445666677777766665554432211 1122234455677777777776652211111222222333445567888
Q ss_pred hhHHHHHHHHHHhCCC------c--hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hHHHHHHHHHHHcC
Q 042098 237 VLGKWVEGFVVKNKMD------L--NFYMGSALIDMYGKCGALVPARRVFDAMVN----KDV----VTWNAMITAYAQNG 300 (566)
Q Consensus 237 ~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~ 300 (566)
+++...+......-.. + .......+...+...|++++|...+++..+ .+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9988888776543111 1 112223344556788999999988887532 221 23455666777899
Q ss_pred CHHHHHHHHHHHHHCCC---CCC--HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCC--
Q 042098 301 LSNEAIMLFNRMKYAGV---NPD--KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV-- 373 (566)
Q Consensus 301 ~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-- 373 (566)
++++|...+++.....- .+. ..++..+...+...|+++.|...+...... .+....
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-----------------~~~~~~~~ 568 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL-----------------IEEQHLEQ 568 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------HHHhcccc
Confidence 99999999988764311 111 123344455677788998888777655442 111100
Q ss_pred -C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 374 -T-NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 374 -~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
+ ....+..+...+...|++++|...+++.........+. ..++..+.......|+.+.|.+.++............
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1 12335556667778899999999998876532001222 3344445666778999999999988875431111111
Q ss_pred hHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------C
Q 042098 450 EHY-----SCMVDLYARAGHLSEAWDFVERMPEK--VDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIE------S 512 (566)
Q Consensus 450 ~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 512 (566)
..+ ...+..+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++.... +
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 11224456689999999998776542 111 113456678888999999999999998752 1
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
....++..++.++.+.|+.++|...+.++.+..
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 223467788899999999999999999887654
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=7.3e-05 Score=76.20 Aligned_cols=158 Identities=14% Similarity=0.224 Sum_probs=115.5
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
++++.|.+.-++... ...|..+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.+++-.+++..
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 444444444444433 346889999999999988888776432 3566899999999999999999999976
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
..++ .-.|... +.|+-+|++.++..+.++++. -|+......+..-|...|.++.|.-++.. .+-|
T Consensus 1159 aRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~ 1223 (1666)
T KOG0985|consen 1159 ARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNF 1223 (1666)
T ss_pred HHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhH
Confidence 6655 5555544 578999999999888766553 47777788888888888888877766653 4457
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q 042098 519 VISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
..|+..+...|+|+.|...-+++
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777788888887776654433
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.7e-06 Score=79.01 Aligned_cols=406 Identities=12% Similarity=0.064 Sum_probs=224.5
Q ss_pred HHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCH
Q 042098 92 GLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDED-DHVSHSLITMYARCGKL 170 (566)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~ 170 (566)
+.... |+++.|+..|.+..... ++|...|..-..+++..|++++|.+=-.+.++. .|+ ..-|+....++.-.|++
T Consensus 11 aa~s~-~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSS-GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhccc-ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 44566 89999999999888765 337777888888899999998888766666554 444 44677788888888999
Q ss_pred HHHHHHHhccCCC---ChhHHHHHHHHHHhcCChhHHHHHHHH--hHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHH
Q 042098 171 DSARKVFDEIRER---DLVSWNSMISGYSKMGYAKEAVELFGR--MREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 171 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~--m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
++|+..|.+-.+. |...++.+..++... . .+.+.|.. |. .++.-++.|-..+ ....+. .++..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~-~~l~~~p~t~~~~-----~~~~~~---~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFH-EKLANLPLTNYSL-----SDPAYV---KILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHH-HHhhcChhhhhhh-----ccHHHH---HHHHH
Confidence 9999998877653 455666666666111 0 11111110 00 0111121111111 111111 11111
Q ss_pred HHHhCC-----Cc-hHHHHHHHHHHHHhcCCH-HHHHHH--HhcCCCC------------C----------hhHHHHHHH
Q 042098 246 VVKNKM-----DL-NFYMGSALIDMYGKCGAL-VPARRV--FDAMVNK------------D----------VVTWNAMIT 294 (566)
Q Consensus 246 ~~~~~~-----~~-~~~~~~~li~~~~~~g~~-~~A~~~--~~~~~~~------------~----------~~~~~~li~ 294 (566)
+ +.++ .. +.....++.... ..+.. ..+... ...+..| | ..-...+..
T Consensus 155 ~-~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 155 I-QKNPTSLKLYLNDPRLMKADGQLK-GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred h-hcCcHhhhcccccHHHHHHHHHHh-cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1 1110 00 111111110000 00000 000000 0000001 0 112445677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC
Q 042098 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT 374 (566)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 374 (566)
+..+..++..|++-+....+.. -+..-++..-.++...|.............+.|... +.-++.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~----------rad~kl---- 296 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL----------RADYKL---- 296 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH----------HHHHHH----
Confidence 7778888999999998887764 333344445556777776666655444444433220 000000
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~ 453 (566)
=...+..+..+|.+.++++.++..|++..... ..|+..+ +....+++....+... -+.|.. .-..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~--Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r 362 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEH--RTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEER 362 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh--cCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHH
Confidence 01122224446667788899999998877665 4444322 2223344444333322 233432 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.=...+.+.|++..|+..|.++..+ .|...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 2255667778888888888777654 45667777777788888888888888888888888888888778888888888
Q ss_pred HHHHHHHHHHHhCC
Q 042098 532 DDSAKMRALMREKG 545 (566)
Q Consensus 532 ~~A~~~~~~~~~~g 545 (566)
++|.+.+++..+.+
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888887776655
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.90 E-value=3e-07 Score=89.74 Aligned_cols=231 Identities=19% Similarity=0.147 Sum_probs=173.7
Q ss_pred cccHHHHHHHHHccCChhHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhccCC---------
Q 042098 119 NFTYPFVFISCANLLALNHGVSVHSSVFKI-----GL-DEDDH-VSHSLITMYARCGKLDSARKVFDEIRE--------- 182 (566)
Q Consensus 119 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~--------- 182 (566)
..+...+...|...|+++.|..++++.++. |. .|... ..+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667888999999999999999988775 21 23332 344577788899999999999988763
Q ss_pred -C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHH-----CCC-CCCHH-HHHHHHHHhcCCCCchhHHHHHHHHHHhC---
Q 042098 183 -R-DLVSWNSMISGYSKMGYAKEAVELFGRMRE-----EEF-LPDEI-TLVSVLGSCGDLGDLVLGKWVEGFVVKNK--- 250 (566)
Q Consensus 183 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 250 (566)
| -..+++.|...|.+.|++++|...+++..+ .|. .|... -++.+...|...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 234788888899999999998888776532 122 22322 35677788899999999999998765532
Q ss_pred CCc----hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 042098 251 MDL----NFYMGSALIDMYGKCGALVPARRVFDAMVNK-----------DVVTWNAMITAYAQNGLSNEAIMLFNRMKY- 314 (566)
Q Consensus 251 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 314 (566)
+.+ -..+++.|...|...|++++|.+++++..+. ....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2358899999999999999999999998331 133678888899999999999999888543
Q ss_pred ---CCC-CC-CHhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 315 ---AGV-NP-DKITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 315 ---~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
.|. .| ...+|..|...|...|+++.|..+...+.+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 232 12 235788899999999999999998877764
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.5e-05 Score=75.04 Aligned_cols=424 Identities=13% Similarity=0.094 Sum_probs=212.2
Q ss_pred HHHHHHHHHhCCCCChHHHHHhh---cCCCchhHHHHhhcCCCCCcchHHH--HHHHHH--cCCCChhHHHHHHHHHHHC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRII---DLKDFNYASLLFHQISRPNEYAFNV--MIRGLT--TAWQKYSHSLKLYYQMKRL 113 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~--ll~~~~--~~~~~~~~a~~~~~~m~~~ 113 (566)
.+....+..-+..+...+...++ ..++|++|+.+.+.-... .+++. +=.+|| +. +..++|+..++
T Consensus 32 ~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl-nk~Dealk~~~----- 103 (652)
T KOG2376|consen 32 VKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL-NKLDEALKTLK----- 103 (652)
T ss_pred HHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc-ccHHHHHHHHh-----
Confidence 33344444444333333443333 778888888776654321 11111 223333 45 67777877777
Q ss_pred CCCC-CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHH
Q 042098 114 GLKP-DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE-DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSM 191 (566)
Q Consensus 114 g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 191 (566)
|..+ |..+...-...|.+.|++++|..+|+.+.+.+... +...-..++.+- ..-.+. +.+..+.....+|..+
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPEDSYELL 178 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCcchHHHH
Confidence 2223 23355555666777888888888888887765321 111111122111 111111 3334433223333332
Q ss_pred ---HHHHHhcCChhHHHHHHHHhHHCC-------------CCCCHHHH-HHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 192 ---ISGYSKMGYAKEAVELFGRMREEE-------------FLPDEITL-VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 192 ---i~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
...+...|++.+|+++++...+-+ +.....+. ..+.-.+-..|+-++|..++...++..+...
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 234566788888888887762211 11111111 1233344567777888888777777665422
Q ss_pred H---HHHHHHHHHHHhcCCHH-HHHHHHhcCCCCC--------------hhHHH-HHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 255 F---YMGSALIDMYGKCGALV-PARRVFDAMVNKD--------------VVTWN-AMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 255 ~---~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
. ...|.|+.+-....-++ .++..++...... ....| .++..| .+..+.+.++-....
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp-- 334 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP-- 334 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC--
Confidence 1 12233332221111111 1222222221111 11111 122222 122222222222211
Q ss_pred CCCCCHhHHHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChH
Q 042098 316 GVNPDKITLIGVLSACASIGA--LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH 393 (566)
Q Consensus 316 g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 393 (566)
+-.|. ..+..++..+.+... ...+..++....+. -+.....+--.++......|+++
T Consensus 335 ~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--------------------~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 335 GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--------------------HPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--------------------CCchhHHHHHHHHHHHHhcCCHH
Confidence 11222 334444444433211 12222222211111 11123445666778888999999
Q ss_pred HHHHHHH--------HHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC-CCCh----hHHHHHHHHHH
Q 042098 394 EALLLFE--------RMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL-IPKS----EHYSCMVDLYA 460 (566)
Q Consensus 394 ~A~~~~~--------~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~----~~~~~l~~~~~ 460 (566)
.|.+++. .+.+.+ ..|. +...+...+.+.++.+.|..++......+.. .+.. .++.-++..-.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~--~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAK--HLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhc--cChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 9999999 555544 3344 5555666677777766677777666543211 1122 23444445556
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042098 461 RAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
+.|+-++|..+++++.. .+|..+...++.+|++. |.+.|+.+-+.+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 88999999999999986 37888888999998886 678887776554
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.3e-05 Score=70.97 Aligned_cols=257 Identities=12% Similarity=0.033 Sum_probs=183.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhccCChhHHHHHHHHHHHhC-C--CCccc--
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV-LSACASIGALDLGKWVDKYASQRG-L--RHDIF-- 357 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~-- 357 (566)
.|+.....+...+...|+.++|+..|++.+.. .|+..+-.-+ .-.+...|+.+....+...+.... . .+..+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 47888899999999999999999999988764 4443321111 112355677776666655554432 1 11111
Q ss_pred -----cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH
Q 042098 358 -----CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429 (566)
Q Consensus 358 -----~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~ 429 (566)
..+++.|..+-++.. +.++..|-.-...+...|++++|.-.|+..+..- +-+..+|..|+.+|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhchH
Confidence 466777777776655 3344455444567888999999999999887742 34678999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 430 DEGRRLFDLMSSSFGLIPKSEHYSCMV-DLYA-RAGHLSEAWDFVERMPE-KVD-EIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 430 ~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.+|.-.-+...+. +.-+..+...+. ..+. .-..-++|.+++++... +|+ ....+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998888777654 223344444332 2222 22235789999988765 365 3456667788999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
+.+...|+ ......|++++...+.+++|...|..+.+.++..
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99998877 5789999999999999999999999887766543
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=3.8e-07 Score=82.67 Aligned_cols=167 Identities=11% Similarity=0.005 Sum_probs=127.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-h
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-S 449 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~ 449 (566)
....+..+...+...|++++|...++++.... |+. ..+..+..++...|++++|...++.+.+...-.|. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 45667778888999999999999999988754 432 45677778889999999999999999876221122 1
Q ss_pred hHHHHHHHHHHhc--------CCHHHHHHHHHhCCCC-CCHH-HH-----------------HHHHHHHHhcCCHHHHHH
Q 042098 450 EHYSCMVDLYARA--------GHLSEAWDFVERMPEK-VDEI-VL-----------------GALLGACQKQKNTDVSQR 502 (566)
Q Consensus 450 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-~~~~-~~-----------------~~l~~~~~~~~~~~~A~~ 502 (566)
..+..+..++... |++++|.+.++++... |+.. .+ ..+...+.+.|+++.|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 2455555666554 7889999999887653 4322 11 134566788899999999
Q ss_pred HHHHHHhhCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 503 VMQLLLEIESSN---SGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 503 ~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.++++++..|++ +..+..++.++...|++++|.++++.+....
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999987664 4788999999999999999999999887653
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.85 E-value=6.5e-06 Score=80.68 Aligned_cols=214 Identities=13% Similarity=0.148 Sum_probs=132.0
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHH
Q 042098 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345 (566)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 345 (566)
...|+++.|...|-+.. ..-..+.+-....++.+|+.+++.+++... -...|..+...|++.|+++.|+++|.
T Consensus 717 ~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHH
Confidence 34455555555443321 111223445567788888888888877532 34456777788888888887777664
Q ss_pred HHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 346 YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
. ...++-.|..|.+.|+++.|.++-.+... .......|..-..-.-+
T Consensus 790 e-----------------------------~~~~~dai~my~k~~kw~da~kla~e~~~----~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 790 E-----------------------------ADLFKDAIDMYGKAGKWEDAFKLAEECHG----PEATISLYIAKAEDLDE 836 (1636)
T ss_pred h-----------------------------cchhHHHHHHHhccccHHHHHHHHHHhcC----chhHHHHHHHhHHhHHh
Confidence 3 22366678888888888888888776532 12233444444445667
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.|++.+|.+++-.+ | .|+. -|..|-+.|..++.+++.++.....-..|...+..-+...|++..|+.-|-
T Consensus 837 hgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 78888888877433 2 3442 356777888888888887776543334555666666777777777776665
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
++-. |...++.|...+.|++|-++
T Consensus 907 ea~d--------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 907 EAGD--------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhhh--------HHHHHHHhhhhhhHHHHHHH
Confidence 5432 33344455555555555443
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1.4e-07 Score=86.66 Aligned_cols=242 Identities=11% Similarity=0.075 Sum_probs=159.7
Q ss_pred HHHHhcCCHHHHHHHHhcCC-CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhH
Q 042098 263 DMYGKCGALVPARRVFDAMV-NK--DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDL 339 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 339 (566)
+-+.-.|++..++.-.+.-. .+ +......+.+++...|+++.++ .++.... .|.......+...+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 34456688888886554111 11 2334555678888899877654 3443333 6666666555544443222222
Q ss_pred HHHHHHHHHHhCCCCccccCCHHHHHHHHccCC----C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 340 GKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP----V-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
+..-+++.. . .+....-.....+...|++++|+++++.- .+..
T Consensus 85 ------------------------~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE 132 (290)
T PF04733_consen 85 ------------------------ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLE 132 (290)
T ss_dssp ------------------------HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHH
T ss_pred ------------------------HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------Cccc
Confidence 222222211 1 12222223334566789999999988642 3566
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY----ARAGHLSEAWDFVERMPEK--VDEIVLGALL 488 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 488 (566)
.....+..+.+.++++.|.+.++.|.+ ...| .+...+..++ .-.+.+.+|..+|+++.++ +++.+.+.+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 777788999999999999999999974 3444 3333444443 3344799999999999876 6788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh-HHHHHHHHHHHhC
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW-DDSAKMRALMREK 544 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 544 (566)
.++...|++++|+++++++++.+|.++.+...++.+....|+. +.+.+++.+++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988 7788898888764
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.8e-07 Score=89.10 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=155.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 264 MYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
-+.+.|++.+|.-.|+..+.. +...|.-|.......++-..|+..+++..+. .|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~-------------------- 351 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPT-------------------- 351 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCc--------------------
Confidence 345667777777777776443 3446666666666777777777777766663 343
Q ss_pred HHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC----CC--CCHH
Q 042098 341 KWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA----AR--PNDV 414 (566)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----~~--p~~~ 414 (566)
|..+.-.|.-.|...|.-..|+..++.-+...++ .. ++..
T Consensus 352 ----------------------------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 352 ----------------------------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred ----------------------------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 3344444455555555555666666655443200 00 0000
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQ 492 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~ 492 (566)
+-.. ..+.......+..++|-++....+..+|+.++..|.-.|--.|.+++|+..|+..... .|...||-|...+.
T Consensus 398 ~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 398 FENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 0000 1223334455666677677666566688889999999999999999999999988753 46788999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
...+.++|+..|.+++++.|...++.+.|+..|...|.|++|.+.|=.+.
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876664
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=4.4e-05 Score=74.14 Aligned_cols=302 Identities=12% Similarity=0.004 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCC-CCCHHHHH-HHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHH---H
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEF-LPDEITLV-SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGS---A 260 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 260 (566)
..|..+...+...|+.+.+...+.+...... .++..... .....+...|+++.+...++...+..+... ..+. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHhHH
Confidence 4566666667777777777666666543221 22222111 112234556777777777777666544322 2222 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 261 LIDMYGKCGALVPARRVFDAMVNKD---VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
+.......+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~----------------- 146 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPD----------------- 146 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----------------
Confidence 1111122344444444444322211 112233334555666666666666666553 222
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH--HH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VT 415 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~--~t 415 (566)
+...+..+...+...|++++|..++++.....+ ..|+. ..
T Consensus 147 -------------------------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~-~~~~~~~~~ 188 (355)
T cd05804 147 -------------------------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD-CSSMLRGHN 188 (355)
T ss_pred -------------------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC-CCcchhHHH
Confidence 233455556666667777777777766655421 01222 23
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCC------HHHHHHHHHhC-CCCCCHHHHH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-S--CMVDLYARAGH------LSEAWDFVERM-PEKVDEIVLG 485 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~ 485 (566)
+..+...+...|++++|..++++........+..... + .++..+...|. ++.+....... ..........
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 268 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDL 268 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHH
Confidence 3455566666777777777776654320101111111 1 22222233332 22222211111 1011111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-C--------CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIE-S--------SNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
....++...|+.+.|.++++.+.... . .........+.++...|++++|.+.+......+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45567778888888888888876532 1 124455667788899999999999998887654
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=8.2e-06 Score=79.99 Aligned_cols=111 Identities=13% Similarity=0.056 Sum_probs=55.2
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDV 499 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 499 (566)
|..|.+.|+++.|.++-++.. |-......|-+-..-+-..|++.+|.++|-.+.. |+. .+..|-+.|..+.
T Consensus 798 i~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-PDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-chH-----HHHHHHhhCcchH
Confidence 344444444444444433322 2222233343333444444444444444443331 221 2344555555554
Q ss_pred HHHHHHHHHhhCCCC-chhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 500 SQRVMQLLLEIESSN-SGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 500 A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+++.++- .|+. ..+...++.-|...|+...|.+-|-+..
T Consensus 869 mirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 869 MIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 44444332 2332 3467778888999999999988765553
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=1.2e-06 Score=76.12 Aligned_cols=152 Identities=7% Similarity=0.084 Sum_probs=118.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYA 460 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (566)
-+..|...|+++.+....+.+.. |. . .+...++.+++...++...+. .| +...|..+...|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~------~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~ 84 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD------PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYL 84 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC------cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHH
Confidence 34568899999887666543322 21 0 122366777888888777754 44 4788999999999
Q ss_pred hcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 461 RAGHLSEAWDFVERMPEK--VDEIVLGALLGAC-QKQKN--TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
..|++++|...|++...- .+...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|.
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988652 4667777777764 67677 599999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCC
Q 042098 536 KMRALMREKGVSKTP 550 (566)
Q Consensus 536 ~~~~~~~~~g~~~~~ 550 (566)
..|+++.+.....++
T Consensus 165 ~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 165 ELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhhCCCCcc
Confidence 999999887655443
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.5e-05 Score=68.55 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=171.4
Q ss_pred HHHHHhhcCCCchhHHHHhhcCCC--C-CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHHcc
Q 042098 57 FLLIRIIDLKDFNYASLLFHQISR--P-NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV-FISCANL 132 (566)
Q Consensus 57 ~~~~~l~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~ 132 (566)
.+...+|+..++++|++++..-.+ | +....+.|...|-.. .++..|-+.|+++... .|...-|..- ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 344556788899999999877633 3 556677777788888 8999999999999875 4554444322 3556678
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhccC-CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLIT--MYARCGKLDSARKVFDEIR-ERDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
+.+..|+++...|... +....-..-+. .....+|+..+..++++.+ +.+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 8899999998887542 22211111111 2235688999999999988 4666677766667778999999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc-------------hHH---------------HHHHH
Q 042098 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL-------------NFY---------------MGSAL 261 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------------~~~~l 261 (566)
...+-+--.....|+..+.. .+.++.+.|.....+++++|+.. |+. .+|.-
T Consensus 169 aAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 88664433345667666654 45688999999999988887531 110 11111
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 042098 262 IDMYGKCGALVPARRVFDAMVNK-----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 336 (566)
...+.+.|+++.|.+.+-+|+.+ |++|...+.-. --.+++.+..+-+.-+.+.+. ....||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 22344556666666666666432 44444333211 112333333333443433322 234556666666666554
Q ss_pred hhHHHHH
Q 042098 337 LDLGKWV 343 (566)
Q Consensus 337 ~~~a~~~ 343 (566)
++.|-.+
T Consensus 326 f~lAADv 332 (459)
T KOG4340|consen 326 FDLAADV 332 (459)
T ss_pred HhHHHHH
Confidence 4444433
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.9e-05 Score=71.85 Aligned_cols=420 Identities=15% Similarity=0.070 Sum_probs=225.3
Q ss_pred HHHhhcCCCchhHHHHhhcC---CCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCC
Q 042098 59 LIRIIDLKDFNYASLLFHQI---SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPD-NFTYPFVFISCANLLA 134 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 134 (566)
.|+.+..|+++.|...|-+. .++|-+.|+--..+|+.. |++++|++=-.+-.+. .|+ +..|.-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~-~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL-GSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH-hhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45667889999999999875 356778888888999999 9999998876666654 554 4568888888889999
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHh------ccCC-C------ChhHHHHHHHHHHhcC-
Q 042098 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSA-RKVFD------EIRE-R------DLVSWNSMISGYSKMG- 199 (566)
Q Consensus 135 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A-~~~~~------~~~~-~------~~~~~~~li~~~~~~~- 199 (566)
+++|..-|.+-++.. +.+...++-+..++ ..+.+ .+.|. .+.. | ....|..++..+-+.-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999887753 33455666676666 11111 11111 0000 0 1112333333322210
Q ss_pred ------ChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHhcCCCCch----hHHHHHHHHHH-hCCCchHHHHHHHHHHHHh
Q 042098 200 ------YAKEAVELFGRMREEEFLPDEI-TLVSVLGSCGDLGDLV----LGKWVEGFVVK-NKMDLNFYMGSALIDMYGK 267 (566)
Q Consensus 200 ------~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 267 (566)
+........-.+.. +..... .-..+... ....+. ..........+ .....-..-...+.+..-+
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~--~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKG--VDELLFYASGIEILA--SMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred hhhcccccHHHHHHHHHHhc--CccccccccccccCC--CCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 01111111100000 000000 00000000 000000 00000000000 0000011123456777777
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-------hccCChh
Q 042098 268 CGALVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC-------ASIGALD 338 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-------~~~g~~~ 338 (566)
..++..|.+.+....+ .+..-++....+|...|.+.++...-....+.|.. ...-|+.+-.++ .+.++.+
T Consensus 237 kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 8888888888887644 34445666777888888888887777776665532 222333333333 3334444
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH-HH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT-FI 417 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t-~~ 417 (566)
.+...+......-..++ ...+....++++...+...-. .|.... ..
T Consensus 316 ~ai~~~~kaLte~Rt~~-----------------------------~ls~lk~~Ek~~k~~e~~a~~----~pe~A~e~r 362 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPD-----------------------------LLSKLKEAEKALKEAERKAYI----NPEKAEEER 362 (539)
T ss_pred HHHHHHHHHhhhhcCHH-----------------------------HHHHHHHHHHHHHHHHHHHhh----ChhHHHHHH
Confidence 44444443332221111 122233345555544444432 233311 11
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ 494 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~ 494 (566)
.=...+.+.|++..|+..+.+++.. .|+ ...|....-+|.+.|.+..|++=.+...+. +....|.--..++...
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 1244566677777777777777754 344 567777777777777777777765555432 2233344444555556
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
.+++.|.+.|++.++.+|.+......+.++...
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 677778888888887777777666666666654
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=6.2e-07 Score=73.54 Aligned_cols=104 Identities=8% Similarity=-0.028 Sum_probs=50.7
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ 494 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~ 494 (566)
.+...+...|++++|...|+..... .|+ ...+..+..++.+.|++++|+..|++...- .+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344444555555555555554422 332 344445555555555555555555554431 2344444444555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
|+.++|...|+++++..|+++..+...+.+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555555555555555555544444333
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=0.00014 Score=72.77 Aligned_cols=198 Identities=15% Similarity=0.160 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhccCChhHHHHHHHHHHHhC--CCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 042098 322 ITLIGVLSACASIGALDLGKWVDKYASQRG--LRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399 (566)
Q Consensus 322 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 399 (566)
..|..--..+...|+.+.|..++......- +.....+|+.++|.++-++-. |..+..-+.+.|-..|++.+|..+|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444444455556666666666666665532 222223567777766655433 5556677888888999999999988
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhh---------------hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 042098 400 ERMSKEGGAARPNDVTFIGVLSACVH---------------AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH 464 (566)
Q Consensus 400 ~~m~~~g~~~~p~~~t~~~ll~~~~~---------------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (566)
.+... |...|+.|-. ..+.-.|-++|++. |.. ...-+..|-++|.
T Consensus 991 TrAqa-----------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen 991 TRAQA-----------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGM 1050 (1416)
T ss_pred HHHHH-----------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcc
Confidence 87653 2222222221 22333444444433 211 1223456778888
Q ss_pred HHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------h
Q 042098 465 LSEAWDFVERMPE-------------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLE---------------------I 510 (566)
Q Consensus 465 ~~~A~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------~ 510 (566)
+.+|+++--+-.+ ..|+...+--..-++...++++|..++-.+.+ +
T Consensus 1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~ 1130 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAEL 1130 (1416)
T ss_pred hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHh
Confidence 8887775322111 24555555555666666777777666555442 1
Q ss_pred -CC------C---CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 511 -ES------S---NSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 511 -~p------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
-| + -..+...++..+.++|.|..|.+=|.++
T Consensus 1131 mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1131 MTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1 1245667899999999999998866544
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=0.00025 Score=68.86 Aligned_cols=297 Identities=12% Similarity=0.015 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CChh---HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-HHHHHH--
Q 042098 155 HVSHSLITMYARCGKLDSARKVFDEIRE---RDLV---SWNSMISGYSKMGYAKEAVELFGRMREEEFLPD-EITLVS-- 225 (566)
Q Consensus 155 ~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~-- 225 (566)
..+..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+. .|+ ...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhH
Confidence 4566666777777888876665555432 2222 2222234566789999999999998775 343 333332
Q ss_pred -HHHHhcCCCCchhHHHHHHHHHHhCCCch-HHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcC
Q 042098 226 -VLGSCGDLGDLVLGKWVEGFVVKNKMDLN-FYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNG 300 (566)
Q Consensus 226 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~ 300 (566)
........+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+ | +...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 11112224455555555544 1122233 33445667788999999999999999844 3 4567788888999999
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHH
Q 042098 301 LSNEAIMLFNRMKYAGVN-PDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSW 379 (566)
Q Consensus 301 ~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 379 (566)
++++|...+++....... |+. ....|
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~-----------------------------------------------------~~~~~ 189 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSML-----------------------------------------------------RGHNW 189 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcch-----------------------------------------------------hHHHH
Confidence 999999999988764211 110 11234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH-H--HHHHHHhhhCcHHHHHHH--HHHhHHhcCCCCC--hhHH
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF-I--GVLSACVHAGLVDEGRRL--FDLMSSSFGLIPK--SEHY 452 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~-~--~ll~~~~~~g~~~~A~~~--~~~~~~~~~~~p~--~~~~ 452 (566)
..+...+...|++++|..++++.....+ ..+..... + .++.-+...|..+.+.+. +...... ..... ....
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~ 267 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSA-ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcccc-CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHH
Confidence 5566677788888888888888754320 11222111 1 222223333432222222 1111111 10111 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC--C---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK--V---D------EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.....++...|+.++|..+++.+... . . ........-++...|+.+.|.+.+..++..
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 24566777888888888888776431 1 1 111122224556789999999999888765
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=8.5e-06 Score=83.91 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
++..+-.|.....+.|++++|..+++...+. .|+. .....+...+.+.+++++|....++.... .|+ ....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHH
Confidence 3555666666666666666666666666653 3443 33444555566666666666666665543 444 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..+..++...|++++|..+|+++... |+ ...+..+..++...|+.++|...|+++++...+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55556666666666666666666532 32 455556666666666666666666666665433
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=6.4e-08 Score=56.31 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=20.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 042098 149 GLDEDDHVSHSLITMYARCGKLDSARKVFDEI 180 (566)
Q Consensus 149 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 180 (566)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1.7e-06 Score=70.90 Aligned_cols=109 Identities=10% Similarity=-0.068 Sum_probs=89.6
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
.++++..+ +.|+. +..+...+...|++++|...|+..... .+...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 34543 556778888999999999999987653 577888888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
|.++..+..++.++...|++++|.+.+++..+....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998876553
No 108
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=7.1e-06 Score=70.27 Aligned_cols=162 Identities=11% Similarity=0.044 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
|..++-+....|+.+.|..+++++... + |.+.-...|= .-+-..|.+++|+++++.+.++ + +.|..++..=+-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~---f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR---F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh---C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHH
Confidence 444445555666777777777776665 3 3332222221 1233456777777777777654 2 223455555555
Q ss_pred HHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC---ChH
Q 042098 458 LYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK---MWD 532 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 532 (566)
+.-..|+.-+|++-+.+..+. .|...|.-+...|...|+++.|.-.+++++-..|.++..+..+++++...| +++
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 555566666666666655543 567777777777777777777777777777777777777777777766655 455
Q ss_pred HHHHHHHHHHhCCC
Q 042098 533 DSAKMRALMREKGV 546 (566)
Q Consensus 533 ~A~~~~~~~~~~g~ 546 (566)
-|++++.+..+...
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 66666666665544
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=1.1e-07 Score=55.29 Aligned_cols=32 Identities=31% Similarity=0.692 Sum_probs=19.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.00023 Score=78.50 Aligned_cols=333 Identities=11% Similarity=-0.025 Sum_probs=206.7
Q ss_pred HHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC------CCCHH--HHHHHHHHh
Q 042098 163 MYARCGKLDSARKVFDEIRE----RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEF------LPDEI--TLVSVLGSC 230 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~--t~~~ll~~~ 230 (566)
.....|+++.+...++.++. .+..........+...|+++++...++.....-- .|... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777877777777642 2233333444556678999999999987754211 11111 112223445
Q ss_pred cCCCCchhHHHHHHHHHHhCCCch----HHHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CC--hhHHHHHHHHHH
Q 042098 231 GDLGDLVLGKWVEGFVVKNKMDLN----FYMGSALIDMYGKCGALVPARRVFDAMVN-------KD--VVTWNAMITAYA 297 (566)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~ 297 (566)
...|+++.|...++.........+ ....+.+...+...|++++|...+.+... +. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678999999999998776422222 12445666778889999999999887732 11 124455666788
Q ss_pred HcCCHHHHHHHHHHHHHC----CCC--C-CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 298 QNGLSNEAIMLFNRMKYA----GVN--P-DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-----------------~~ 605 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL-----------------SN 605 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh-----------------hc
Confidence 899999999998886542 221 1 11223333444566688888877665554321 11
Q ss_pred CCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH--HH--HHHHHHHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 371 MPV-TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV--TF--IGVLSACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 371 ~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~--t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
... .....+..+...+...|++++|.+.+.+............. .. ...+..+...|+.+.|...+...... ..
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~ 684 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EF 684 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CC
Confidence 110 11334555677888999999999999887543100111111 10 11223345578999999998765432 11
Q ss_pred CCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 446 IPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK------V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 446 ~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
... ...+..+..++...|++++|...+++.... + ...+...+..++...|+.++|...+.++++....
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 111 112356777889999999999999887541 1 1235556668889999999999999999987643
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=0.00035 Score=71.53 Aligned_cols=429 Identities=13% Similarity=0.054 Sum_probs=229.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
++...|+..|-+..+..+. =...|..|-..|+...+...|.+.|+...+.. ..+..........|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3456666665555544211 23457777777777777778888888776653 334556777788888888888888875
Q ss_pred hccCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 178 DEIRERDL-----VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 178 ~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
-...+.+. ..|-..--.|...++..+++.-|+...+.. +-|...|..+..+|.+.|.+..|..+|.++....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 44443221 123333334556677777777777665532 124556677777777777777777777666554433
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------ChhHHHHHHHHHHHcCCH-------HHHHHHHHHHHHC
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNK----------DVVTWNAMITAYAQNGLS-------NEAIMLFNRMKYA 315 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~-------~~a~~~~~~m~~~ 315 (566)
..-..| -..-..+..|.+.+|...+..+... -..++-.+...+.-.|-. +++++.|.-...+
T Consensus 629 s~y~~f-k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 SKYGRF-KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred hHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 222221 2233445566777776666655220 011121111222222222 2222222222211
Q ss_pred CCCCCHhHHHHHHHH-----------------------HhccCCh---h------------------------HHHHHHH
Q 042098 316 GVNPDKITLIGVLSA-----------------------CASIGAL---D------------------------LGKWVDK 345 (566)
Q Consensus 316 g~~p~~~~~~~ll~~-----------------------~~~~g~~---~------------------------~a~~~~~ 345 (566)
....+...+..+-.+ ....+.. + .+..+++
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 111111111111111 1111111 0 0000011
Q ss_pred HHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 042098 346 YASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~ 422 (566)
.+...+-. ..+...|...+.... ..+...||.|.-. ...|.+.-|...|-+-... .+....+|..+.-.
T Consensus 788 ~f~~l~et----~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s---ep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 788 YFLLLGET----MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS---EPTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHcCCc----chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc---cccchhheecccee
Confidence 01000000 122233444443332 3344455554433 4445555555555544443 23445566666666
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhc
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM-----PE--KVDEIVLGALLGACQKQ 494 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~~~~~~~~l~~~~~~~ 494 (566)
+.+..+++.|...|..... +.|+ ...|-.........|+.-++..+|..- .. -++...|.+........
T Consensus 860 ~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred EEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 7778899999999987763 4554 455555555556778888888887651 11 16666665555555666
Q ss_pred CCHHHHHHHH----------HHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 495 KNTDVSQRVM----------QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 495 ~~~~~A~~~~----------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
|+.++-+.-. ++.....|++..+|...+....+.+.+++|.++..++
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6655544443 4444456999999999999999999999998887665
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=3.9e-05 Score=72.31 Aligned_cols=174 Identities=18% Similarity=0.136 Sum_probs=114.3
Q ss_pred CCHHHHHHHHccCC------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHH
Q 042098 359 GSIDDALKVFEDMP------VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432 (566)
Q Consensus 359 ~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A 432 (566)
.++.++...-+.++ .|+...+...+.+......-..+-.++-+-.+.+ -...-|..-+ .+...|++++|
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~aa~YG~A~-~~~~~~~~d~A 325 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG----GLAAQYGRAL-QTYLAGQYDEA 325 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc----chHHHHHHHH-HHHHhcccchH
Confidence 45555555555555 3455556666655444333333333332222211 1223344333 34456888888
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 433 RRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 433 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
+..++.+... .|+ +.........+...++.++|.+.++++... |+ ...+-.+..++.+.|+..+|+++++....
T Consensus 326 ~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 326 LKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 8888888764 455 555666778888899999999988888764 65 55566677888888999999999998888
Q ss_pred hCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 510 IESSNSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
.+|+++..|..|+.+|...|+..+|....-+
T Consensus 403 ~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 403 NDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 8899998998888888777666555554433
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=3.3e-05 Score=81.35 Aligned_cols=164 Identities=14% Similarity=0.140 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.|.+++..-..-|.-+...++|+++.+.- -.-..|..|...|.+.+.+++|.++++.|.++++ -....|..++.
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHH
Confidence 46666666556666666667777766542 1233456666667777777777777777776654 34556666677
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 458 LYARAGHLSEAWDFVERMPEK-VD---EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
.+.+.++-+.|..++++...- |. .....-.+..-.+.||.+++..+|+..+...|.-...|..+++.-.+.|+.+.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH
Confidence 777777767777766665432 32 23333344555566777777777777777777767777777777777777777
Q ss_pred HHHHHHHHHhCCCc
Q 042098 534 SAKMRALMREKGVS 547 (566)
Q Consensus 534 A~~~~~~~~~~g~~ 547 (566)
++.+|+++...+++
T Consensus 1653 vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHhcCCC
Confidence 77777777666554
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00022 Score=61.91 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=86.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
+..+.+..+++-|...+++|.+-. +..|.+.|..++.+ .+.+..|.-+|++|.++ ..|+..+.+....+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHH
Confidence 445566777888888888887643 55677767666554 34577888888888753 57777788888888
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCc
Q 042098 459 YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKN-TDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~ 515 (566)
....|++++|..++++...+ .++.+...++-.-...|. .+--.+.+.++....|.++
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 88888888888888887764 456666555544444454 3445566666666667654
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=3.1e-05 Score=67.08 Aligned_cols=155 Identities=9% Similarity=0.050 Sum_probs=116.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (566)
..+-..+...|+-+....+....... -+-|.......+......|++..|...+++... .-++|...|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHH
Confidence 44556677777777777777765432 123444555577778888888888888888875 3355678888888888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 460 ARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
.+.|++++|..-|.+..+ ..++...+.+...+.-.||.+.|..++.......+.+..+-..|+.+....|++++|+.+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888888877654 245666777888888888888888888888887777888888888888888888888876
Q ss_pred HH
Q 042098 538 RA 539 (566)
Q Consensus 538 ~~ 539 (566)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 54
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=3e-05 Score=67.14 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGAL 487 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 487 (566)
.|+......+-..+...|+-+....+...... ....+......++....+.|++.+|+..+.+... .+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45443335566677788888888888877653 2233456667799999999999999999999865 4889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.-+|-+.|+++.|...|.+++++.|.++.+++.++-.|.-.|+++.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876544
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=5.6e-05 Score=68.44 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccC
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK----ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCG 359 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 359 (566)
.....+..+...+.+.|++++|...|+++... .|+. .++..+..++...|+++.|...++.+.+......
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---- 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence 35567777888888999999999999988774 2332 2333334444444444444444444433221100
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHHc--------CChHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHhhhCcHH
Q 042098 360 SIDDALKVFEDMPVTNEVSWNAMISALAFN--------GRAHEALLLFERMSKEGGAARPNDV-TFIGVLSACVHAGLVD 430 (566)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~~~p~~~-t~~~ll~~~~~~g~~~ 430 (566)
.-..++..+..++... |++++|.+.++++.... |+.. ....+... .. ..
T Consensus 105 --------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~~-~~---~~ 162 (235)
T TIGR03302 105 --------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY----PNSEYAPDAKKRM-DY---LR 162 (235)
T ss_pred --------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC----CCChhHHHHHHHH-HH---HH
Confidence 0011233333333332 34444555555544432 3221 11111000 00 00
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
. .. ......+...|.+.|++++|+..+++.... | ....+..+..++.+.|++++|...++
T Consensus 163 ~------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 163 N------RL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred H------HH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 00 000124566788899999999999887653 3 24678888899999999999999988
Q ss_pred HHHhhCC
Q 042098 506 LLLEIES 512 (566)
Q Consensus 506 ~~~~~~p 512 (566)
.+....|
T Consensus 228 ~l~~~~~ 234 (235)
T TIGR03302 228 VLGANYP 234 (235)
T ss_pred HHHhhCC
Confidence 8877655
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=4.5e-06 Score=68.12 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
...+...+...|++++|.+.++.+.. . .+...|..+...+...|+++.|...++++++.+|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 33344444445555555555544432 1 233444444455555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHhC
Q 042098 530 MWDDSAKMRALMREK 544 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~ 544 (566)
++++|.+.++...+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 119
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00029 Score=65.88 Aligned_cols=163 Identities=10% Similarity=-0.008 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 375 NEVSWNAMISALAFNGR--AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
+..+|+-....+.+.|+ .++++.+++++.+.. +-|..+|+.-...+...|+++++++.++++.+. +. -|...|
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW 179 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAW 179 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHH
Confidence 33445544444444444 256777777777654 345667777667777777888888888888765 22 234555
Q ss_pred HHHHHHHHhc---CCH----HHHHHHHHhCCC-C-CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 453 SCMVDLYARA---GHL----SEAWDFVERMPE-K-VDEIVLGALLGACQKQ----KNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 453 ~~l~~~~~~~---g~~----~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
+.....+.+. |.. +++++...++.. . .+...|+.+...+... +...+|.+.+.++...+|.++.++.
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 5555444443 222 355666544433 3 4566777777777663 3456688888888888899999999
Q ss_pred HHHHHHHhCC------------------ChHHHHHHHHHHH
Q 042098 520 ISSKIFANLK------------------MWDDSAKMRALMR 542 (566)
Q Consensus 520 ~l~~~~~~~g------------------~~~~A~~~~~~~~ 542 (566)
.|+++|.... ..++|.++++.+.
T Consensus 260 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 260 DLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 9999998643 3467888887774
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=0.0015 Score=58.93 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=110.3
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHH---HHHHHccCChhHHHHHHHHHHHhCCCCchhH-HHHHHHHH
Q 042098 89 MIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFV---FISCANLLALNHGVSVHSSVFKIGLDEDDHV-SHSLITMY 164 (566)
Q Consensus 89 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~ 164 (566)
+-..+... |++..|+.-|....+- |+..|-.+ ...|...|+-..|+.=++..++. .||-.. -.--...+
T Consensus 44 lGk~lla~-~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLAR-GQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 44444444 6666666666665543 33333333 23444555555565555555543 344321 11122344
Q ss_pred HhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHH
Q 042098 165 ARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 244 (566)
.+.|.++.|..=|+.+.+.++.. +....+..+.-..++- ......+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHH
Confidence 55566666665555554322100 0000111111001111 111223344455667777777776
Q ss_pred HHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 042098 245 FVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM---VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321 (566)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 321 (566)
.+++..+ .+...+..-..+|...|++..|+.=++.. ...++.++-.+-..+...|+.+.++..+++..+. .||.
T Consensus 180 ~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 180 HLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred HHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 6666543 36666777778888888888887665554 3346666666777777888888888888887764 5665
Q ss_pred hH
Q 042098 322 IT 323 (566)
Q Consensus 322 ~~ 323 (566)
..
T Consensus 257 K~ 258 (504)
T KOG0624|consen 257 KL 258 (504)
T ss_pred hh
Confidence 43
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=3.8e-05 Score=73.77 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHH
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 306 (566)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+ .|....-.|...|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35678888888889888888765 677888888888888888888888888755 25667777778899999999999
Q ss_pred HHHHHHHHC
Q 042098 307 MLFNRMKYA 315 (566)
Q Consensus 307 ~~~~~m~~~ 315 (566)
..++.-...
T Consensus 374 ~~L~~Wi~~ 382 (579)
T KOG1125|consen 374 KMLDKWIRN 382 (579)
T ss_pred HHHHHHHHh
Confidence 999887654
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=3.9e-05 Score=75.66 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=135.2
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 252 DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
+|-...-..+...+...|-...|..+|+++ ..|..+|.+|+..|+..+|..+..+-.+ -+|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 344445567788899999999999999875 4577788999999999999999988877 378888888888776
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
...--++.|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +.
T Consensus 468 ~d~s~yEkawElsn~~sar---------------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---pl 517 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR---------------------------AQRSLALLILSNKDFSEADKHLERSLEIN---PL 517 (777)
T ss_pred cChHHHHHHHHHhhhhhHH---------------------------HHHhhccccccchhHHHHHHHHHHHhhcC---cc
Confidence 6665556666555443321 11111111223455666666665554432 22
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALL 488 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 488 (566)
...+|-.+..+..+.++++.|.+.|..... +.|| ...|+.+-.+|.+.|+..+|...+++..+- .+...|...+
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 334555555555556666666666655552 3454 445666666666666666666666655431 3334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh
Q 042098 489 GACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
-...+.|.+++|.+++.++..+
T Consensus 595 lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHh
Confidence 5555666666666666666543
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.9e-05 Score=66.42 Aligned_cols=222 Identities=10% Similarity=0.046 Sum_probs=137.3
Q ss_pred CCCCChHHHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhH-HHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 51 FIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH-SLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 51 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
+...++.++.+++..|.+.....-...-..|.....-.+-..+... ++-+. --++.+.+...-...+......-...|
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e-~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELE-SNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred hhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCc-chhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 4456778888888888776555444443333333333222222223 33333 334555555443343434444445667
Q ss_pred HccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-hhHHHHHHHHHHh----cCChhHH
Q 042098 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD-LVSWNSMISGYSK----MGYAKEA 204 (566)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~~~~~~a 204 (566)
+..+++++|.+...... +......=+..+.+..+++-|.+.++.|.+-| ..+.+.|..++.+ .+.+.+|
T Consensus 119 ~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred hcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhH
Confidence 88899999998876521 22333333455677888999999999998853 4456656665554 4578899
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCC-HHHHHHHHhcC
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA-LVPARRVFDAM 281 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~ 281 (566)
.-+|++|-++ ..|+..+.+....++...|++++|..+++..+..........-| +|-+-...|. .+...+.+.++
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N-liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN-LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH-HHHHHHHhCCChHHHHHHHHHH
Confidence 9999999765 78888888888888888888888888888888776653333333 3333333343 33344445444
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=0.0018 Score=66.59 Aligned_cols=265 Identities=14% Similarity=0.036 Sum_probs=134.4
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 273 PARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 273 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
.|...+...++ .+...||.|.-. ...|.+.-+...|-+-.... +....+|..+--.+....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 44555544422 344455555433 33344444444443333221 12333444444445556666666666665554
Q ss_pred hCCCCccc----------cCCHHHHHHHHccCC--------CCChhHHHHHHHHHHHcCChHHHHHHHHH----------
Q 042098 350 RGLRHDIF----------CGSIDDALKVFEDMP--------VTNEVSWNAMISALAFNGRAHEALLLFER---------- 401 (566)
Q Consensus 350 ~~~~~~~~----------~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~---------- 401 (566)
..+..... .|+.-++..+|..-. .++..-|-+.......+|+.++-+...++
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 33222111 344444444444311 23333333333344455554443332222
Q ss_pred HHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCHHHHHHHHHhCCC
Q 042098 402 MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC----MVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 402 m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.... .+-+...|.+.....-+.+.+..|.+...+...-.....+...|+. +.+.++..|.++.|..-+.....
T Consensus 959 yf~~---~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 959 YFLG---HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHhc---CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 2222 2334455666555566666666666666655433223344455553 34556677888877776666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
..+...-..-+.. .-.|+++++.+.|++++.+...+. .....++.+....+.-+.|...+-+...
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 4344333333333 334788889999999888743332 3444555666667777777776655543
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.34 E-value=2.6e-05 Score=67.69 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH-HhcCC--
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY-ARAGH-- 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~-- 464 (566)
.++.+++...+++..+.+ +.|...|..+...|...|+++.|...+++..+. .|+ ...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCC
Confidence 566788888888887764 567788888889999999999999999988854 554 67777888764 67777
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 465 LSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 465 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
.++|.+++++.... .+...+..+...+.+.|++++|...++++++..|++..-+..+
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 59999999998764 4667778888899999999999999999999988766554433
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=4.4e-05 Score=62.93 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l 455 (566)
.|..++..+ ..++...+...++.+.+..+..+......-.+...+...|++++|...|+.+... ...|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 345555554 3667777777777777654101011122333445566677777777777777665 31222 1233345
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
...+...|++++|+..++..... .....+.....++...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56666666666666666554433 22333444445666666666666666553
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.8e-05 Score=75.33 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=100.1
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQK 493 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~ 493 (566)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.... | +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566677778899999999988865 354 4445788888888888999988887653 3 55555556677889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.++++.|+.+.+++.+..|.+..+|..|+.+|...|+++.|+-.++-+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988763
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00039 Score=73.69 Aligned_cols=228 Identities=13% Similarity=0.057 Sum_probs=165.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH---hHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCH
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDK---ITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSI 361 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (566)
...|-..|....+.++.++|.++.++.... +++-.. ..|.++++.-...|.-+....+|+++.+..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---------- 1527 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---------- 1527 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----------
Confidence 346777788888888888888888887653 222221 234445544444454455555555554432
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 362 DDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
.....|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+
T Consensus 1528 ------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 ------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred ------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 12446888999999999999999999999987 556677888999999999999999999998886
Q ss_pred hcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC
Q 042098 442 SFGLIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSN 514 (566)
Q Consensus 442 ~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 514 (566)
. -|. .....-.+..-.+.|+.+++..+|+..... | ....|+.++..-.++|+.+.+..+|++++.+. |..
T Consensus 1593 ~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1593 S---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred h---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 4 444 344555566667899999999999988764 3 56789999999999999999999999999875 444
Q ss_pred c-hhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 515 S-GNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 515 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+ ..|..+...-...|+-+.++.+=.++
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3 35666777777777776666554443
No 129
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.00039 Score=65.09 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc--HHHHHHHHHHhHHhcCCCC-ChhH
Q 042098 376 EVSWNAMISALAFNG-RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL--VDEGRRLFDLMSSSFGLIP-KSEH 451 (566)
Q Consensus 376 ~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p-~~~~ 451 (566)
..+|+.--.++...| ++++++..++++.+.. +-+..+|+.-...+.+.|+ .+++..+++.+.+. .| |..+
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~A 144 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHA 144 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHH
Confidence 344555555555666 5799999999999865 3344556554444555555 36778888888754 44 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ---KN----TDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~---~~----~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
|+....++.+.|+++++++.++++.+. .+...|+.....+.+. |. .+.+.....+++..+|.|.++|..+.
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 888888889999999999999998763 5667777776665554 22 35788888899999999999999999
Q ss_pred HHHHh----CCChHHHHHHHHHHHhCCC
Q 042098 523 KIFAN----LKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 523 ~~~~~----~g~~~~A~~~~~~~~~~g~ 546 (566)
.++.. .++..+|.+...+..+.++
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcccC
Confidence 99988 3456778888877666443
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.27 E-value=1.1e-05 Score=64.94 Aligned_cols=97 Identities=8% Similarity=-0.110 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
......+...+...|++++|.++|+-+.. ..+...|-.|..++...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455666777889999999999988654 3567778888889999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 042098 527 NLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g 545 (566)
..|+.+.|++.|+.....-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.27 E-value=0.0048 Score=59.30 Aligned_cols=148 Identities=9% Similarity=0.065 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWD 470 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 470 (566)
.+.....++++...-. +.|+ .+|..+++.-.+..-++.|..+|.++.+. +..+ .+.++++++.-|| .++.+-|.+
T Consensus 347 ~~~~~~~~~~ll~~~~-~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~Afr 422 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIED-IDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFR 422 (656)
T ss_pred hhhhHHHHHHHHhhhc-cCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHH
Confidence 4445555555544320 2222 34555566666666667777777777665 4444 4556666666554 356667777
Q ss_pred HHHhCCCC-CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhh--CC-CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 471 FVERMPEK-VDEIVL-GALLGACQKQKNTDVSQRVMQLLLEI--ES-SNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 471 ~~~~~~~~-~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+|+--..+ +|...| ...+.-+...|+...+..+|++++.. .| ....+|..++..-..-|+.+.+.++-+++..
T Consensus 423 IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 423 IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77665543 333333 44555566667777777777777665 11 1345666666666777777777766655543
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00027 Score=73.92 Aligned_cols=214 Identities=12% Similarity=0.089 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN--KD-VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
+...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++.-+ .+... .+...-+..+-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHHHH
Confidence 444666777777777777777777775533 22 22333333355666666655554 22221 2222222222222
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 042098 331 CASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAAR 410 (566)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 410 (566)
|...|+. ..+..++..+..+|-+.|+.++|..+++++.+.. +
T Consensus 106 ~~~i~~~-----------------------------------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~ 147 (906)
T PRK14720 106 CDKILLY-----------------------------------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---R 147 (906)
T ss_pred HHHHHhh-----------------------------------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---c
Confidence 2222211 1234578889999999999999999999999975 4
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------------
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE------------- 477 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 477 (566)
-|....|.+.-.|... +.++|.+++.+.... |...+++..+.+++.++..
T Consensus 148 ~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 148 DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 5678888899899888 999999999888764 2333344444444443332
Q ss_pred -----C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 478 -----K----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 478 -----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
. --..++..+-..|....+++++..+++.+++.+|.|..+..-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1 223445555577888899999999999999999999999999988887
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.0084 Score=61.28 Aligned_cols=421 Identities=14% Similarity=0.110 Sum_probs=205.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--HccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC--ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
+++..|+....++.+. .|+. .|..++.++ .+.|..++|..+++.....+.. |..|...+-..|.+.++.++|..
T Consensus 23 ~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 6677777777776654 2332 344455554 3667777777666666555433 66677777777777777777777
Q ss_pred HHhccCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC-C---------chhHHHHH
Q 042098 176 VFDEIRE--RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG-D---------LVLGKWVE 243 (566)
Q Consensus 176 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~---------~~~a~~~~ 243 (566)
+++...+ |+......+..+|.+.+.+.+-.+.--+|-+ .++-+...|=++++.....- . ...|....
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 7777665 4444455555566666655443333222222 13333444434443332110 1 12344444
Q ss_pred HHHHHhC-CCchHHHHHHHHHHHHhcCCHHHHHHHHhc-C----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 042098 244 GFVVKNK-MDLNFYMGSALIDMYGKCGALVPARRVFDA-M----VNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV 317 (566)
Q Consensus 244 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 317 (566)
+.+.+.+ ..-+..=...-...+...|++++|.+++.. . ..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5444443 111111112223445567889999888832 2 223444555667777888899998888888888753
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc----cCCHHHHHHHHccCC-CCChhHHHHHHHHHH---Hc
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF----CGSIDDALKVFEDMP-VTNEVSWNAMISALA---FN 389 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~---~~ 389 (566)
|. |...+.... +.+......|... .+..+...+..++.. ......|-+-+.+.. .-
T Consensus 258 --Dd--y~~~~~sv~------------klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 258 --DD--YKIYTDSVF------------KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLI 321 (932)
T ss_pred --cc--hHHHHHHHH------------HHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhccc
Confidence 32 333333211 1111110000000 122222222222221 111112333333332 34
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHHhc
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-------HYSCMVDLYARA 462 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~ 462 (566)
|+.+++...|-+-. | -.| .+..=+..|...=..+.-..++...... .++.. .+...+..-.-.
T Consensus 322 gd~ee~~~~y~~kf--g--~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 322 GDSEEMLSYYFKKF--G--DKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred CChHHHHHHHHHHh--C--CCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHh
Confidence 66666555443221 2 112 1111111111111222222222222211 11110 011111111111
Q ss_pred CC-----HHHHHHHH-------HhCCC--C---CCH---------HHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC
Q 042098 463 GH-----LSEAWDFV-------ERMPE--K---VDE---------IVLGALLGACQKQKNT---DVSQRVMQLLLEIESS 513 (566)
Q Consensus 463 g~-----~~~A~~~~-------~~~~~--~---~~~---------~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~ 513 (566)
|. -+.-..++ +.-.+ + |+. .+.+.|+..+.+.+|. -+|+-+++......|.
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h 471 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH 471 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc
Confidence 11 11111111 11100 0 221 2346677888888875 4667777777788899
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 514 NSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
|..+-..++++|.-.|-+..|.++++.+.-+.|..+
T Consensus 472 nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 472 NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999999999999999988866555543
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=6.6e-05 Score=74.10 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh----------------------------Cc
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA----------------------------GL 428 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~----------------------------g~ 428 (566)
..|...|.+|+..|+..+|..+..+-.++ +|++..|..+.+..... ++
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 34666677777777777777776666553 36666666555543333 45
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 429 VDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
++++.+.|+.-.+ +.|- ..+|-.+.-+..+.++++.|.+.|..... ..+...||.+-.+|.+.++..+|...++
T Consensus 501 fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 501 FSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 5555555554432 2332 45666677777788888888888877654 2456788999999999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++++.+-.+..+|....-+....|.+++|.+.++++.+...
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99888877888888888888888999999998888875443
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=4.7e-05 Score=62.73 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDE----IVLGAL 487 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l 487 (566)
..|..++..+ ..++...+...++.+...++-.|- ....-.+...+...|++++|...|+.+... |+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 478889999999999876222111 234445668889999999999999998875 443 234446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
...+...|++++|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78899999999999999763 334556778889999999999999999999864
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00083 Score=63.68 Aligned_cols=231 Identities=11% Similarity=0.035 Sum_probs=151.6
Q ss_pred HHHHHhcCCCCchHHHHHHHHH---HhCCCCChHHHHHhhcCCCchhHHHHhhcCCC------CCcchHHHHHHHHHcCC
Q 042098 27 LLSLLKKCPSTKTVQQIHTQML---INFIQKPNFLLIRIIDLKDFNYASLLFHQISR------PNEYAFNVMIRGLTTAW 97 (566)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~ 97 (566)
+..+-++.-++..+...++.+. ..+-.|+.++.++=+-..++.+++..-++++. |+...+...+.+....
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~- 287 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEA- 287 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhcc-
Confidence 3334455556666666666666 55667888887777777888888888888854 3444555555554443
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 042098 98 QKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVF 177 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~ 177 (566)
..-..+-.++.+-.+ ..-...-|...+.. ...|.++.|+..++.+++.- +-|+.........+.+.++.++|.+.+
T Consensus 288 ~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~-~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 288 LPNQQAADLLAKRSK--RGGLAAQYGRALQT-YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred ccccchHHHHHHHhC--ccchHHHHHHHHHH-HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 222222222222222 11133334444433 46688999999999988762 345566667778888899999999998
Q ss_pred hccCC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 178 DEIRE--RD-LVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 178 ~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
+.+.. |+ ...+-.+..+|.+.|++.+|+..++..... .+-|...|..+..+|...|+..++...
T Consensus 364 ~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A------------ 430 (484)
T COG4783 364 KKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA------------ 430 (484)
T ss_pred HHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH------------
Confidence 88875 43 455666778888899999999888887665 455677787788888877777666543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 255 FYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
....|...|++++|...+...
T Consensus 431 ------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 431 ------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ------HHHHHHhCCCHHHHHHHHHHH
Confidence 344556667777777666655
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.00065 Score=70.38 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=92.5
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..+...+..|.....+.|..++|..+++.+.+... .+......++..+.+.+++++|+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---------------------d~~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---------------------DSSEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---------------------CcHHHHHHHHHHHHHhccHHHHHH
Confidence 34455666666666666666666666665555332 245566677777777777888887
Q ss_pred HHHHHHhCCCCCCCCH-HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 398 LFERMSKEGGAARPND-VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.+++..... |+. .....+..++.+.|++++|..+|+++... .|+ ..++..+..++...|+.++|...|++.
T Consensus 142 ~~~~~l~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 142 EIELYFSGG----SSSAREILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHhhcC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777653 444 44455555667777888888888777753 333 567777777777778888887777776
Q ss_pred CCC--CCHHHHHHHH
Q 042098 476 PEK--VDEIVLGALL 488 (566)
Q Consensus 476 ~~~--~~~~~~~~l~ 488 (566)
.+. |....|+.++
T Consensus 215 ~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 215 LDAIGDGARKLTRRL 229 (694)
T ss_pred HHhhCcchHHHHHHH
Confidence 543 4445544443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=7.3e-05 Score=60.92 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=84.0
Q ss_pred HHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 398 LFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+++.... .|+ ......+...+...|++++|.+.++.+... + +.+...+..+...+.+.|++++|..++++..
T Consensus 5 ~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGL----DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcC----ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 343 344555666777888888888888887754 1 2346777788888888888888888888775
Q ss_pred CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 477 EK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 477 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.. .+...+..+...+...|+.+.|...++++++..|++....
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 32 4566777778888889999999999999999888876533
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.3e-06 Score=50.00 Aligned_cols=35 Identities=43% Similarity=0.691 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCH
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDE 220 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 220 (566)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.3e-06 Score=49.49 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=28.0
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCc
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDN 119 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 119 (566)
.+||++|.+|++. |++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~-~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKA-GRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCC
Confidence 3688888888888 8888888888888888888773
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=4e-05 Score=60.85 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN---SGNYVISSKIF 525 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 525 (566)
.++..+.+.|++++|.+.|+.+... |+ ...+..+..++.+.|+++.|...++.+....|.+ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444444321 21 1233334444555555555555555555444432 23444445555
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 042098 526 ANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (566)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555444
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=3.5e-06 Score=61.94 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 462 AGHLSEAWDFVERMPEK-V---DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
.|++++|+.+++++... | +...+-.+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777766543 3 334455567778888888888888877 666676667777778888888888888887
Q ss_pred HHH
Q 042098 538 RAL 540 (566)
Q Consensus 538 ~~~ 540 (566)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=1.3e-05 Score=56.34 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC-ChHHHHHHHHHHHhC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK-MWDDSAKMRALMREK 544 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 544 (566)
+...|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988764
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=3.4e-05 Score=58.20 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..+...+...|++++|...+++.... | +...+..+...+...++++.|.+.+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876542 3 34566777788888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 042098 530 MWDDSAKMRALMREKG 545 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~g 545 (566)
++++|.+.++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999988876543
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.0017 Score=68.14 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 042098 225 SVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNE 304 (566)
Q Consensus 225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 304 (566)
.+..+|.+.|+.+++..+++++++.. +-+..+.|.+...|+.. ++++|.+++.+. +..+...+++.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~ 187 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchH
Confidence 33344444444444444444444444 22444556666666666 666666665543 223555667777
Q ss_pred HHHHHHHHHHC
Q 042098 305 AIMLFNRMKYA 315 (566)
Q Consensus 305 a~~~~~~m~~~ 315 (566)
+.+++.++...
T Consensus 188 ~~e~W~k~~~~ 198 (906)
T PRK14720 188 IEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHhc
Confidence 77777777664
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=6.3e-06 Score=48.37 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLP 218 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 218 (566)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999888887
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.8e-06 Score=47.73 Aligned_cols=33 Identities=42% Similarity=0.684 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 319 (566)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.04 E-value=1.2e-05 Score=55.68 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+...+...|++++|...|+++++..|.++..+..++.++...|++++|..+++++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999998876544
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00016 Score=57.33 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALL 488 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~ 488 (566)
++..+...+...|++++|...|+.+.....-.+. ...+..+..++.+.|++++|.+.++.+... |+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566667777777777777777654111111 235556777777888888888887776542 33 44566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.++.+.|+.+.|...++++++..|++......
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 78888888888888888888888887655443
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00047 Score=61.20 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=75.4
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 498 (566)
-+.+.+++.+|+..|.+.+. +.|+ ...|..-.-+|++.|.++.|++-.+....- .-..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 35567778888888877774 4555 555666677788888888888777766542 23566777778888888888
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
+|++.|+++++++|++......|-.+-.+.+.-.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888766666655554444443
No 151
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.95 E-value=0.018 Score=54.30 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=145.9
Q ss_pred cCCCchhHHHHhhcCCC---CC------cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--Hcc
Q 042098 64 DLKDFNYASLLFHQISR---PN------EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC--ANL 132 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~ 132 (566)
+.+++.+|.++|.++-+ .+ .+.-+.+|++|..+ +.+.....+....+. .| ...|-.+..++ -+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 88999999999988732 22 22345677787764 577777777776653 23 34455555544 467
Q ss_pred CChhHHHHHHHHHHHh--CCC------------CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhHHHH
Q 042098 133 LALNHGVSVHSSVFKI--GLD------------EDDHVSHSLITMYARCGKLDSARKVFDEIRE--------RDLVSWNS 190 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ 190 (566)
+.+++|.+.+..-.+. +.. +|...-+..+..+...|++.++..+++.+.. -+..+||.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888888888776654 322 2223345677788889999999988888764 37778887
Q ss_pred HHHHHHhc--------CC-------hhHHHHHHHHhHH------CCCCCCHHHHHHHHHHhcCC--CCchhHHHHHHHHH
Q 042098 191 MISGYSKM--------GY-------AKEAVELFGRMRE------EEFLPDEITLVSVLGSCGDL--GDLVLGKWVEGFVV 247 (566)
Q Consensus 191 li~~~~~~--------~~-------~~~a~~~~~~m~~------~~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~ 247 (566)
++-.+.++ .. ++.++-...+|.. ..+.|....+..++....-. ....--.+++....
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 55444432 11 1222222233321 13456656566666544332 23333444555555
Q ss_pred HhCCCchHH-HHHHHHHHHHhcCCHHHHHHHHhcCC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 248 KNKMDLNFY-MGSALIDMYGKCGALVPARRVFDAMV--------NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 248 ~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..-+.|+-. +...|+.-+.. +.+++..+.+.+. +.=+.++..++....+.++..+|-+.+.-+.-.
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 555556543 23444444444 4455544444431 123457888888888999999988888877653
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.034 Score=57.10 Aligned_cols=207 Identities=12% Similarity=0.044 Sum_probs=128.9
Q ss_pred HHHHHHHhCCCCChHHHHHhh--cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCC
Q 042098 43 IHTQMLINFIQKPNFLLIRII--DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP 117 (566)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~--~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 117 (566)
+-..+.+++-.+...++.+|. +.|+.++|..+++... ..|..+...+-..|.+. ++.++|..+|+...+. -|
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~--~P 108 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQK--YP 108 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhh--CC
Confidence 334445555556666666666 8888899988888763 23566777777788888 8899999999888764 56
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----------CHHHHHHHHhccCCCC--h
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG----------KLDSARKVFDEIRERD--L 185 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----------~~~~A~~~~~~~~~~~--~ 185 (566)
+..-...+..+|.+.+++.+-.++--++.+. ++-++..+=++++.+...- -..-|.+.++.+.+.+ .
T Consensus 109 ~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~ 187 (932)
T KOG2053|consen 109 SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI 187 (932)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc
Confidence 6777777778888887776655544444442 3334444445555554331 1234555666555433 1
Q ss_pred ---hHHHHHHHHHHhcCChhHHHHHHH-HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc
Q 042098 186 ---VSWNSMISGYSKMGYAKEAVELFG-RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL 253 (566)
Q Consensus 186 ---~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (566)
.-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.+.
T Consensus 188 ~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 188 ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 111112233445778888888884 33333233344444556677777788888888888877777653
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.001 Score=57.43 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHhCC-C-CCCCCHHH-HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 042098 389 NGRAHEALLLFERMSKEG-G-AARPNDVT-FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGH 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g-~-~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 464 (566)
..+.++..+++.++.... . ...|+..+ |..++-+....|+.+.|...++.+...+ |. ..+-..-.-.+-..|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhc
Confidence 456888888888876421 0 03355543 5666777788999999999999998763 44 2232222334567899
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 465 LSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 465 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+++|+++++.+.+. .|..++.--+......|+.-+|++-+...++..|.|...|..++.+|...|++++|.--++++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999875 4567777777777778888899999999999999999999999999999999999999999887
Q ss_pred hCC
Q 042098 543 EKG 545 (566)
Q Consensus 543 ~~g 545 (566)
-..
T Consensus 182 l~~ 184 (289)
T KOG3060|consen 182 LIQ 184 (289)
T ss_pred HcC
Confidence 543
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00047 Score=65.90 Aligned_cols=121 Identities=18% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchh
Q 042098 159 SLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVL 238 (566)
Q Consensus 159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 238 (566)
.|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++++.... .+-+...+..-...+...++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence 44555555677777777777777666666666667776667777777777766643 12233333333334444444444
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 239 GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
|..+.+++.+..+. +..+|..|..+|...|+++.|+-.++.+
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44444444433221 2223444444444444444444444443
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00014 Score=69.81 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=89.5
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKN 496 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 496 (566)
...+...|+++.|+..|++..+. .|+ ...|..+..+|.+.|++++|+..++++... .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45567789999999999999865 555 678888899999999999999999998653 467788888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
+++|+..|+++++++|.++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998887776664444
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00026 Score=63.19 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQ---KNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
|...|-.|..+|.+.|+++.|..-|.+... .++...+..+..++... .+..++..+++++++.+|.|......|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 478899999999999999999999988754 25566666666554433 3578899999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 042098 523 KIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 555 (566)
..++..|++.+|...|+.|.+.....+|+.+.+
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999999999999999999888777766544
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.0011 Score=61.16 Aligned_cols=135 Identities=12% Similarity=0.167 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 468889999999999999999999998654 2233444444333 333577888999999999863 4467788889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
++.+.+.|+.+.|..+|++.... +. ...|...+.--.+.|+.+....+.+++.+..|.+..
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999998875 43 358999999999999999999999999998777543
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=4e-05 Score=53.62 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=46.0
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.+.|++++|.+.|+++...+|++..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678889999999999999999999999999999999999999998887776544
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.00036 Score=59.45 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
.+..+...+...|++++|...|++.... |+ ...+..+...+.+.|+++.|...++++++..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666666777776666665431 11 346667777778888888888888888888888888888888888
Q ss_pred HhCCC--------------hHHHHHHHHHHHhCCC
Q 042098 526 ANLKM--------------WDDSAKMRALMREKGV 546 (566)
Q Consensus 526 ~~~g~--------------~~~A~~~~~~~~~~g~ 546 (566)
...|+ +++|.+.+++..+.+.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 77776 5666677666665543
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3e-05 Score=44.27 Aligned_cols=31 Identities=55% Similarity=0.899 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEF 216 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 216 (566)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877664
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0021 Score=64.58 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHHc--C---ChHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHhhh--------CcHHHHHHHHHH
Q 042098 373 VTNEVSWNAMISALAFN--G---RAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHA--------GLVDEGRRLFDL 438 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~--~---~~~~A~~~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~--------g~~~~A~~~~~~ 438 (566)
+.|..+|...+.+.... + +..+|..+|++..+.. |+- ..+..+..++... .+...+.+..+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld----P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE----PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45667777777764432 2 2667888888887754 553 3343333322211 112233333333
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.........++..|.++.-.....|++++|...+++... .|+...|..+...+...|+.++|.+.++++.+++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 222101222345566665555566777777777766654 366666666666777777777777777777777766654
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.00011 Score=52.17 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
-..+.+.++++.|.+.+++++..+|+++..+...+.++...|++++|.+.+++..+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788899999999999999999999999999999999999999999999998876653
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.3e-05 Score=43.20 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=22.2
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCC
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGL 115 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 115 (566)
++||.+|++|++. |++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~-~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKM-GQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHcc-chHHHHHHHHHHHhHCcC
Confidence 3677777777777 777777777777776653
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.00072 Score=64.90 Aligned_cols=102 Identities=11% Similarity=0.005 Sum_probs=82.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 459 (566)
.....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++... .|+ ...|..+..+|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHH
Confidence 34566778899999999999999875 345677888888899999999999999999864 564 67888899999
Q ss_pred HhcCCHHHHHHHHHhCCCC-CCHHHHHHHH
Q 042098 460 ARAGHLSEAWDFVERMPEK-VDEIVLGALL 488 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~ 488 (566)
...|++++|+..|++.... |+.......+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999987653 5555544444
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.073 Score=53.12 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=102.9
Q ss_pred CCCcccHHHHHHHHHccCChhHHHHHHHHHHH-hCC--------CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChh
Q 042098 116 KPDNFTYPFVFISCANLLALNHGVSVHSSVFK-IGL--------DEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLV 186 (566)
Q Consensus 116 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 186 (566)
.|.+..|..+.......-.++.|+..|-.... .|+ -.+.....+=+.+| .|++++|++++-++.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 57777888777766666666666665533321 111 11222222333333 48999999999999877753
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHH
Q 042098 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPD----EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALI 262 (566)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 262 (566)
|..+.+.|++-.+.++++. .|-..| ...++.+...++....++.|.+.|..-... ...+
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 4566677887776666542 222222 235666666666666677777666543221 3456
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 042098 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (566)
.++.+..++++-+.+.+.+++ |....-.+...+.+.|.-++|.+.+-
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 666666666666666666654 23344455666666776666665553
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.68 E-value=0.06 Score=52.15 Aligned_cols=159 Identities=9% Similarity=0.093 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
..+|...|..-.+......|..+|.+..+.+ ..+ +....++++..+|. ++.+-|.++|+.=.+++|- ++.--..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~--r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~ 440 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDK--RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLK 440 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHH
Confidence 4578888998889999999999999999988 666 66777888887765 8899999999987776442 2344456
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----chhHHHHHHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN----SGNYVISSKIF 525 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~ 525 (566)
.++-+...++-..|..+|++.... .....|..++.--...||...+.++-++.....|.+ ...-..+.+-|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 778888999999999999998765 235889999999999999999999999888766622 12333445556
Q ss_pred HhCCChHHHHHHHH
Q 042098 526 ANLKMWDDSAKMRA 539 (566)
Q Consensus 526 ~~~g~~~~A~~~~~ 539 (566)
.-.+.+.--..-++
T Consensus 521 ~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 521 GILDLYPCSLDELK 534 (656)
T ss_pred hhcccccccHHHHH
Confidence 55555544433333
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.67 E-value=0.00067 Score=50.74 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHHccC--------ChhHHHHHHHHHHHhCCCCchhH
Q 042098 86 FNVMIRGLTTAWQKYSHSLKLYYQMKRLGL-KPDNFTYPFVFISCANLL--------ALNHGVSVHSSVFKIGLDEDDHV 156 (566)
Q Consensus 86 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 156 (566)
-...|..+... +++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+...+.+++.|+..++.|+..+
T Consensus 28 ~i~~I~~~~~~-~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFEN-EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhh-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34456677777 999999999999999999 999999999999988653 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 042098 157 SHSLITMYAR 166 (566)
Q Consensus 157 ~~~li~~~~~ 166 (566)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00017 Score=49.85 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
+...+.+.|++++|++.|+++... | +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888888888888888764 4 566777788888899999999999999999888874
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.00073 Score=57.33 Aligned_cols=93 Identities=9% Similarity=-0.146 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...+..+...+...|++++|+..|++.... | ...++..+...+...|+.++|...++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888877776421 2 23477888888999999999999999999999988888888888
Q ss_pred HHH-------hCCChHHHHHHHHHH
Q 042098 524 IFA-------NLKMWDDSAKMRALM 541 (566)
Q Consensus 524 ~~~-------~~g~~~~A~~~~~~~ 541 (566)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655544
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0037 Score=62.75 Aligned_cols=136 Identities=11% Similarity=0.010 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHhhh-----CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 042098 409 ARPNDVTFIGVLSACVHA-----GLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARA--------GHLSEAWDFVER 474 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 474 (566)
.+.+...|...+++.... ++...|..+|++..+. .|+ ...|..+..++... +++..+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 567788999998885432 3477999999999865 787 44555554444322 123445555554
Q ss_pred CCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 475 MPE----KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 475 ~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
... ..+...+..+.-.....|++++|...++++++++| +...|..++.++...|+.++|...++++.+.+...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 322 24556777777667778999999999999999999 57899999999999999999999999998876654
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.002 Score=54.84 Aligned_cols=130 Identities=14% Similarity=0.133 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEH 451 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 451 (566)
....+..+...+...|++++|...|++..+.. ..+. ...+..+...+.+.|++++|...+++..+. .|+ ...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHH
Confidence 44567777777888888888888888887654 2222 356677777788888888888888877753 443 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
+..+...|...|+...+..-++... ..+++|.+.++++.+.+|++ |..++..+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666677777776655553333211 23677888889888888886 5555555555554
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.00095 Score=49.99 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... ...+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHH
Confidence 3344455555555555555555555432 122234444444455555555555555544432 11112334444444
Q ss_pred HHhcCCHHHHHHHHHh
Q 042098 459 YARAGHLSEAWDFVER 474 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~ 474 (566)
+...|++++|...+..
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.012 Score=48.52 Aligned_cols=133 Identities=8% Similarity=-0.013 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHH
Q 042098 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V---DEIVL 484 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~ 484 (566)
+.|+...-..|..+....|+..+|...|++...- -+--|....-.+.++....+++..|...++.+.+. | ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5577777777888899999999999999888763 33445677788888888999999999988887652 2 23334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
..+.+.+...|....|+..|+.++...|. +......+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45668888899999999999999988776 55566677788899988887765544443
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00031 Score=62.30 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
.-+.+.+++++|+..|.+...- .+.+.|..=..+|.+.|.++.|.+-.+.++.++|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4467889999999999998752 46667777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcc
Q 042098 535 AKMRALMREKGVSK 548 (566)
Q Consensus 535 ~~~~~~~~~~g~~~ 548 (566)
.+.|++..+.....
T Consensus 169 ~~aykKaLeldP~N 182 (304)
T KOG0553|consen 169 IEAYKKALELDPDN 182 (304)
T ss_pred HHHHHhhhccCCCc
Confidence 99998887655443
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0008 Score=54.68 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
...-+-..|++++|..+|.-+.. .-+..-|..|..++...++++.|...|..+..++++||.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445577888888888876543 3456667777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 042098 533 DSAKMRALMRE 543 (566)
Q Consensus 533 ~A~~~~~~~~~ 543 (566)
.|++.|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877765
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.00034 Score=51.25 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=40.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSE 467 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 467 (566)
.|+++.|+.+++++.+..+ ..|+...+..+..++.+.|++++|..+++. . ...|+ ......+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCC-CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4566666666666665430 011233334455666666666666666655 2 12222 2333344566666666666
Q ss_pred HHHHHHh
Q 042098 468 AWDFVER 474 (566)
Q Consensus 468 A~~~~~~ 474 (566)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666553
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.052 Score=50.46 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHh-cCCCCC--h
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAA---RPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSS-FGLIPK--S 449 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~---~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~--~ 449 (566)
..+..+...+.+.|++++|..+|++....-... +.+.. .|...+-.+...||...|.+.+++.... .++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 356677888999999999999999987643001 12222 2333344566679999999999988743 122222 3
Q ss_pred hHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 042098 450 EHYSCMVDLYAR--AGHLSEAWDFVERMP 476 (566)
Q Consensus 450 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 476 (566)
.....|+.++-. ...+.+|+.-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 456677777754 346788888888876
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.099 Score=49.02 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
.+..|.-+...|+...|.++-.+.. -|+..-|..-+.+++..+++++-.++... .-.+..|...+.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk------v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK------VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEA 246 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHH
Confidence 4444555556666665555544442 25666666666666666666655554321 1123555666666
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042098 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRV 503 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (566)
+.+.|...+|..++.++.. ..-+..|.+.|++.+|.+.
T Consensus 247 ~~~~~~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHCCCHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHH
Confidence 6666666666666666331 2234455566666666544
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.026 Score=50.79 Aligned_cols=157 Identities=9% Similarity=0.055 Sum_probs=104.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HH---HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPND-VT---FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t---~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
.....+...|++++|.+.|+++.... |+. .. .-.+..++.+.++++.|...+++..+.+.-.|+. -|...+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~ 111 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYM 111 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHH
Confidence 34455567889999999999988754 333 22 2345667788899999999999888764444442 222222
Q ss_pred HHHH--hcC---------------C---HHHHHHHHHhCCCC-CCHH------HH------------HHHHHHHHhcCCH
Q 042098 457 DLYA--RAG---------------H---LSEAWDFVERMPEK-VDEI------VL------------GALLGACQKQKNT 497 (566)
Q Consensus 457 ~~~~--~~g---------------~---~~~A~~~~~~~~~~-~~~~------~~------------~~l~~~~~~~~~~ 497 (566)
.+++ ..+ + ..+|++.|+++..+ |+.. .. -.+..-|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2222 111 2 23555666666543 3211 10 1233568889999
Q ss_pred HHHHHHHHHHHhhCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 498 DVSQRVMQLLLEIESSN---SGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.-|..-++.+++..|+. +.....+..+|...|..++|.++.+.+.
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999999988765 4566678899999999999999887654
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0013 Score=59.62 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----EHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVL 484 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~ 484 (566)
..|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+... |+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34444444445567777777777777655 3432 35556666666666666666666666532 22 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
-.+..++...|+.+.|...++++++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3344555566666666666666666666654
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0033 Score=47.13 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhhhC--------cHHHHHHHHHHhHHhcCCCCC
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVTFIGVLSACVHAG--------LVDEGRRLFDLMSSSFGLIPK 448 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p~~~t~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~p~ 448 (566)
+-...|..+...+++.....+|+.+...| + -|+..+|+.++.+.++.. +.-..+.+++.|... +++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCc
Confidence 34455666677799999999999999999 8 899999999999877642 355678899999988 89999
Q ss_pred hhHHHHHHHHHHh
Q 042098 449 SEHYSCMVDLYAR 461 (566)
Q Consensus 449 ~~~~~~l~~~~~~ 461 (566)
..+|+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987765
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0028 Score=60.98 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhH
Q 042098 215 EFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN----KDVVT 288 (566)
Q Consensus 215 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 288 (566)
+.+.+...+..+++.+....+++.+..++...... ....-..+..++|+.|...|..+++..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777778888888888888888888777665 2222334456899999999999999999888654 78999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 289 WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 289 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888778888888888777665
No 183
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.078 Score=53.46 Aligned_cols=302 Identities=13% Similarity=0.053 Sum_probs=173.8
Q ss_pred HHHHhhcCCCchhHHHHhhcCCCCC---cchHHHHHHHHHcCCCC--hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc
Q 042098 58 LLIRIIDLKDFNYASLLFHQISRPN---EYAFNVMIRGLTTAWQK--YSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL 132 (566)
Q Consensus 58 ~~~~l~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 132 (566)
+.+.++..+.+..|+++-..+.-|. ..+|......+.+. .+ -+++++.+++=.+.-. .+..+|..+.+.....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~-~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQ-SDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhc-cCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4455568899999999999887665 56666666666654 22 2233333333222212 3556788888888889
Q ss_pred CChhHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--------------hhHHHHHHH
Q 042098 133 LALNHGVSVHSSVFKIGLD----EDDHVSHSLITMYARCGKLDSARKVFDEIRER-D--------------LVSWNSMIS 193 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~--------------~~~~~~li~ 193 (566)
|+.+.|..+++.=...+.+ .+..-+..-+.-....|+.+-...++-.+.+. + ...|..+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 9999999887653322211 11222334444555667766666665555431 1 111222221
Q ss_pred --------HHHhcCChhHHHHHHHHh------HHCCCCCCHHHHHHHHHHhcCCCCchhHHH----------HHHHHH-H
Q 042098 194 --------GYSKMGYAKEAVELFGRM------REEEFLPDEITLVSVLGSCGDLGDLVLGKW----------VEGFVV-K 248 (566)
Q Consensus 194 --------~~~~~~~~~~a~~~~~~m------~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~----------~~~~~~-~ 248 (566)
.+...++-..++..|..- ...|..|+.. ...+++++........+ +.+.+. +
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q 677 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ 677 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222222110 0123333333 23344444333211111 111111 1
Q ss_pred hCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 249 NKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
.|......+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.++ ++.-|..++
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 22223333345556667788999999999999999999999999999999999998877766553 256677889
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLF 399 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 399 (566)
.+|.+.|+.++|..++..+.. +.-...+|.+.|++.+|.++-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~-----------------------------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG-----------------------------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC-----------------------------hHHHHHHHHHhccHHHHHHHH
Confidence 999999988888876654321 225667788888887776653
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0023 Score=59.19 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL-YARAGHLSEAWDFVERMPEK--VDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 490 (566)
.+|..+++..-+.+..+.|..+|.+..+. -..+..+|...... |...++.+.|.++|+..... .+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888898999999999999999753 22344556555555 33357777799999998764 577888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
+.+.|+.+.|..+|++++..-|.+. .+|..+++.-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 68999999999999999999999988764
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=0.00018 Score=50.27 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=32.6
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGA 486 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 486 (566)
+.|++++|.++|+.+... .| +...+..+..+|.+.|++++|.++++++... |+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666666666666544 33 3445555666666666666666666665543 44444433
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.36 E-value=0.0055 Score=59.02 Aligned_cols=125 Identities=12% Similarity=0.006 Sum_probs=74.8
Q ss_pred CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHH
Q 042098 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 317 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
.+.+...+..+++.+....+++.+..++-..+....... --..+..++|+.|...|..+.++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~------------------~~~~t~ha~vR~~l~~~~~~~~l 123 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY------------------LLPSTHHALVRQCLELGAEDELL 123 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc------------------ccCccHHHHHHHHHhcCCHHHHH
Confidence 344555666666666666666666555555544322111 01223447777777777777777
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 042098 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA 462 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 462 (566)
.++..=...| +-||..|++.|++.+.+.|++..|.++...|... +...+..++..-+.++.+.
T Consensus 124 ~~L~n~~~yG--iF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 124 ELLKNRLQYG--IFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhChhhcc--cCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 7777777777 7777777777777777777777777777666655 4444555544444444333
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.0011 Score=56.26 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=79.0
Q ss_pred hhHHHHhhcC--CCCCcchHHHHHHHHHcC----CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc----------
Q 042098 69 NYASLLFHQI--SRPNEYAFNVMIRGLTTA----WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANL---------- 132 (566)
Q Consensus 69 ~~A~~~~~~~--~~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------- 132 (566)
.--...|+.. ...|-.+|..++..+.+. .|..+-....+..|.+.|+.-|..+|+.||+.+-+.
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3345566665 467888899888888753 277888888899999999999999999999888642
Q ss_pred ------CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 133 ------LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 133 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
.+.+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2335678888999888988998888888888866543
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0056 Score=51.89 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP--KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGAC 491 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~ 491 (566)
+..+...+...|++++|...|+..... ...+ ...++..+...|...|++++|++.+++.... ....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 344444444455555555555555432 1111 1224555555555555555555555554331 1223333333333
Q ss_pred H-------hcCCHH-------HHHHHHHHHHhhCCCC
Q 042098 492 Q-------KQKNTD-------VSQRVMQLLLEIESSN 514 (566)
Q Consensus 492 ~-------~~~~~~-------~A~~~~~~~~~~~p~~ 514 (566)
. ..|+++ +|...++++...+|++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3 556655 4455555555666654
No 189
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.33 E-value=0.0002 Score=41.55 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=30.9
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 504 MQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
++++++.+|+++..|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0094 Score=55.47 Aligned_cols=165 Identities=14% Similarity=0.057 Sum_probs=109.8
Q ss_pred CChhHHHHH-HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH--HhhhCcHHHHHHHHHHhHHhcCCCCChh
Q 042098 374 TNEVSWNAM-ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA--CVHAGLVDEGRRLFDLMSSSFGLIPKSE 450 (566)
Q Consensus 374 ~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 450 (566)
|....|..+ ..++.-.|++++|...--...+.. + ...+..++++ +...++.+.|...|++.. .+.|+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld----~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~ 237 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD----A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQ 237 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc----c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhh
Confidence 333444444 345566788888887766666543 1 1233334443 334677888888887766 3456532
Q ss_pred HH---HHH----------HHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 451 HY---SCM----------VDLYARAGHLSEAWDFVERMPE------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 451 ~~---~~l----------~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
.- ... .+-..+.|++.+|.+.|.+... +|+...|.....+..+.|+.++|+.--++++.++
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 11 111 1334577888888888887764 2556666666677778888888888888888888
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
|.-...|..-++++...++|++|.+.+++..+..-
T Consensus 318 ~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 318 SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88888888888888888888888888887765433
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.32 E-value=0.0035 Score=48.93 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhCCChHHHHHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+.+++...|+.++|..++++.....|+ +......++-++...|+.++|.+.+
T Consensus 44 lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344455555555555555555444444 3333344444455555555555443
No 192
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.30 E-value=0.044 Score=42.44 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=92.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (566)
+.-.|..++..+++.+..... +..-+|-++--....-+-+-..++++.+-+-|.+.|- .-...++.+|+..|.
T Consensus 12 ~ildG~V~qGveii~k~v~Ss-----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS-----NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC-----CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc-
Confidence 445788889999999887643 4555666665555556666667777766554333321 123445566665554
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+....+..+......|+.+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++.++.+.|
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344556677888999999999999999987777789999999999999999999999999999999
Q ss_pred Cc
Q 042098 546 VS 547 (566)
Q Consensus 546 ~~ 547 (566)
+.
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.0087 Score=48.56 Aligned_cols=91 Identities=9% Similarity=-0.025 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 455 (566)
..-.+...+...|++++|.++|+-+.... |. ..-|-.|...|...|++++|+..|...... .|| +..+-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHH
Confidence 34444445556666666666666665532 33 233344444455556666666666655533 333 4555555
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 042098 456 VDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~ 475 (566)
..++...|+.+.|.+.|+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55556666666555555544
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.025 Score=49.51 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYSCMVD 457 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~ 457 (566)
.-.....+...|++++|...|+++....+.-+--....-.++.++.+.|+++.|...++++.+.+.-.|.. ..+-.+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445566778889999999998887642112223455667778888899999999998888774444432 22222222
Q ss_pred HHHh-----------cCCHHHHHHHHHhCCCC-CCHH-----------HH-------HHHHHHHHhcCCHHHHHHHHHHH
Q 042098 458 LYAR-----------AGHLSEAWDFVERMPEK-VDEI-----------VL-------GALLGACQKQKNTDVSQRVMQLL 507 (566)
Q Consensus 458 ~~~~-----------~g~~~~A~~~~~~~~~~-~~~~-----------~~-------~~l~~~~~~~~~~~~A~~~~~~~ 507 (566)
++.. .+...+|...|+.+..+ |+.. .. -.+..-|.+.|.+..|..-++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2211 12234666666665442 2211 00 12346788899999999999999
Q ss_pred HhhCCCCch---hHHHHHHHHHhCCChHHHHH
Q 042098 508 LEIESSNSG---NYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 508 ~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 536 (566)
++..|+++. ....++.+|.+.|..+.|..
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999888754 55677889999999885543
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.29 E-value=0.0069 Score=54.96 Aligned_cols=93 Identities=10% Similarity=0.001 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK-VDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSN---SGNYVISSK 523 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 523 (566)
|..-+..+.+.|++++|+..|+.+... |+. ..+-.+..++...|++++|...|+.+++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334445566666555555432 322 233444455555566666666666665554443 334444455
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 042098 524 IFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~ 544 (566)
++...|++++|.++++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666555543
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.29 E-value=0.072 Score=47.99 Aligned_cols=194 Identities=10% Similarity=-0.021 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--CCh-hH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 261 LIDMYGKCGALVPARRVFDAMVN--KDV-VT---WNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
....+...|++++|.+.|+.+.. |+. .. .-.+..++.+.+++++|...+++..+....-....+...+.+.+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667888888888888744 222 11 2345567788888888888888887753332233444444443210
Q ss_pred CChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH
Q 042098 335 GALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV 414 (566)
Q Consensus 335 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~ 414 (566)
..- ...+. .-...+....+...+... ...+..++.-|=.+.-..+|...+..+... .-..
T Consensus 118 ~~~---~~~~~----~~~~~~~~~rD~~~~~~A--------~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-----la~~ 177 (243)
T PRK10866 118 ALD---DSALQ----GFFGVDRSDRDPQHARAA--------FRDFSKLVRGYPNSQYTTDATKRLVFLKDR-----LAKY 177 (243)
T ss_pred hcc---hhhhh----hccCCCccccCHHHHHHH--------HHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----HHHH
Confidence 000 00000 000000000111111111 012333333333333444554444443321 1111
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.+ .+.+-|.+.|.+..|..-++.+.+.+.-.|. ......++.+|...|..++|.++...+
T Consensus 178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 3455577777777777777777765332222 445666777777777777777665543
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.29 E-value=0.0089 Score=49.20 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhH
Q 042098 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNY 518 (566)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~ 518 (566)
..-|++..-..|..++...|+..+|...|++...- .|......+.++....++...|...++.+.+..|. ++...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 55788887888999999999999999999998764 68888888999999999999999999999998764 67788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..++++|...|++++|+..|+.....-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 899999999999999999999887643
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.018 Score=53.53 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHhhh-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHH-HHHH
Q 042098 421 SACVHA-GLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DEI-VLGA 486 (566)
Q Consensus 421 ~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~-~~~~ 486 (566)
..|... |+++.|.+.|++....+.-... ..++..+...+.+.|++++|.++|+++... + +.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 5666666666665543221111 234555666677777777777777664321 1 111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.+-++...||...|.+.+++....+|.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 233455567777777777777766653
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.26 E-value=0.0018 Score=59.82 Aligned_cols=130 Identities=14% Similarity=0.042 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHh---HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLM---SSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-------K-VDE 481 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~ 481 (566)
..|..|...|.-.|+++.|+...+.= .+.+|-... ...+..|.+++.-.|.++.|.+.|+.... + ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45667777777789999998776532 233343222 45788899999999999999998876432 2 345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI----E--SSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+.-+|.++|--..+++.|+.++.+=+.+ + ......+..|+.+|...|..++|....++-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56667778888888899999888876654 1 33467889999999999999999988766543
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.011 Score=50.45 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=87.8
Q ss_pred HHHHhcC--CCCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHH
Q 042098 275 RRVFDAM--VNKDVVTWNAMITAYAQ-----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYA 347 (566)
Q Consensus 275 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 347 (566)
...|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv--------- 103 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV--------- 103 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc---------
Confidence 4455555 45677788888888775 477888888899999999999999999999887542 111
Q ss_pred HHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 348 SQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
....+.++-.-| -.+-+-|++++++|...| +-||..|+..+++.+.+.+
T Consensus 104 ---------------------------p~n~fQ~~F~hy--p~Qq~c~i~lL~qME~~g--V~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 104 ---------------------------PRNFFQAEFMHY--PRQQECAIDLLEQMENNG--VMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---------------------------cccHHHHHhccC--cHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHhcccc
Confidence 011111111111 234678999999999999 9999999999999998766
Q ss_pred c-HHHHHHHHHHhHH
Q 042098 428 L-VDEGRRLFDLMSS 441 (566)
Q Consensus 428 ~-~~~A~~~~~~~~~ 441 (566)
. ..+..++.-.|-+
T Consensus 153 ~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 153 HPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4 2334444444433
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.0011 Score=46.37 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQK-NTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 512 (566)
...|..+...+...|++++|+..|++..+. .+...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345556666666666666666666665431 34455666666677777 57777777777777665
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.15 E-value=0.0011 Score=41.32 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
.+|..+...+...|++++|+++++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999998888764
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.39 Score=48.29 Aligned_cols=224 Identities=10% Similarity=0.008 Sum_probs=115.0
Q ss_pred chhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHH-CCCCCCc--------ccHHHHHHHHHccCChhHH
Q 042098 68 FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKR-LGLKPDN--------FTYPFVFISCANLLALNHG 138 (566)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~--------~~~~~ll~~~~~~~~~~~a 138 (566)
+++|.++.+.- |.+..|..+....... -.++.|...|-+... .|++.-. ..-..=+. +--|.+++|
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 44555555443 6667777776655554 556666666555433 2322110 00011111 223788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----ChhHHHHHHHHHHhcCChhHHHHHHHH---
Q 042098 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-----DLVSWNSMISGYSKMGYAKEAVELFGR--- 210 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~--- 210 (566)
.+++-++-++. .-|..+.+.||+-...++++.-... -..+|+.+...+.....+++|.+.|..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88876665543 2345556666766666666543321 112344444444444444444333322
Q ss_pred ----------------hH--HCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHH
Q 042098 211 ----------------MR--EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272 (566)
Q Consensus 211 ----------------m~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 272 (566)
+. ...++.+....-.+.+++.+.|.-++|.+.+-+ .+.+ .+-+..|...++|.
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWG 895 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHH
Confidence 11 112344555556666777777777766655422 2222 33455666677777
Q ss_pred HHHHHHhcCCCCChhHHHH--------------HHHHHHHcCCHHHHHHHHHHHHH
Q 042098 273 PARRVFDAMVNKDVVTWNA--------------MITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 273 ~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
+|.++-+...-|.+.+.-+ -|..+.+.|++-+|-+++.+|.+
T Consensus 896 ~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 896 EAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7777766654443333211 23334556666667777777743
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.08 E-value=0.01 Score=46.86 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHh-------------CCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSK-------------EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------------~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
|..++..+|.++++.|+.+....+++..-. .+.+..|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 346788999999999999999999877521 2233567888888888888888888888888888888
Q ss_pred hcCCCCChhHHHHHHHHH
Q 042098 442 SFGLIPKSEHYSCMVDLY 459 (566)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~ 459 (566)
.++++.+..+|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 888777777777777543
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.022 Score=46.94 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR-----EKGVSKTPG 551 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~ 551 (566)
.....++..+...|+++.|.+..++++..+|.+...|..++.+|...|+..+|.+.++++. +.|+.|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4556677888899999999999999999999999999999999999999999999998884 467776653
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.046 Score=47.85 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch-----HHHHHH
Q 042098 186 VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN-----FYMGSA 260 (566)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 260 (566)
...+.++..+...+.+.-.+..+.+..+...+.++.....+.+...+.||.+.|...++...+..-..+ ..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 456778888888899999999999999887777888888889999999999999999998776543333 333344
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042098 261 LIDMYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGV 327 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 327 (566)
....|.-.+++..|...+.+++.. |+..-|.-.-++.-.|+..+|++.++.|++. .|...+-+.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 445677788999999999988664 4555666555666789999999999999986 4554444433
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.0017 Score=46.72 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI----ESS---NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+++.+...+...|++++|+..++++++. +++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677778888888888888888888765 122 245777888888888998888888887654
No 208
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.03 E-value=0.55 Score=48.91 Aligned_cols=261 Identities=9% Similarity=-0.032 Sum_probs=124.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHH
Q 042098 262 IDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGK 341 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 341 (566)
+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|. ..+..+..++..+.+.|.+....
T Consensus 106 l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH
Confidence 33444566666666633222 23444444455566666776666666666544442 23455666666666555444332
Q ss_pred HHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH---H
Q 042098 342 WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI---G 418 (566)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~---~ 418 (566)
++.++...-. .|+...|..+...+..........++..+ .+...+..++.. ++|+...-. .
T Consensus 184 -~w~R~~~al~-----~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-------~~~~~~~~~~~~~ 247 (644)
T PRK11619 184 -YLERIRLAMK-----AGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-------TGPTDFTRQMAAV 247 (644)
T ss_pred -HHHHHHHHHH-----CCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-------cCCChhhHHHHHH
Confidence 2222211110 14445555554444211111222222222 122222222211 112221111 1
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--EHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQK 495 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 495 (566)
.+.-+ ...+.+.|...+.......++.+.. .+...+.......+...+|...++..... .+.....--+......+
T Consensus 248 ~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 11222 2344567777777665443443332 23344444444443355666666655432 34444444455555677
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+++.+...+..+-...........-+++++...|+.++|..+|+++
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777776666664443445556666777777777777777777765
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.99 E-value=0.004 Score=59.45 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH-
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS- 522 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~- 522 (566)
...++.+..+|...|++++|+..|++... .|+. .+|..+..+|...|+.++|+..++++++..+. .|..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 56677777788888888888888877544 3553 34777777888888888888888888776322 121111
Q ss_pred -HHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 523 -KIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 523 -~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+....+.++..++++.+.+.|..
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1122334445666777777766654
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.0038 Score=44.17 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
..|.+.+++++|+++++.+..- .+...|......+.+.|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5677888888888888887653 3455666677888888899999999999988888776655443
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.90 E-value=0.38 Score=44.95 Aligned_cols=275 Identities=13% Similarity=0.063 Sum_probs=177.2
Q ss_pred cCCCchhHHHHhhcCC---CCCcchHHHHHHH--HHcCCCChhHHHHHHHHHHHCCCCCCcccHH----HHHHHHHccCC
Q 042098 64 DLKDFNYASLLFHQIS---RPNEYAFNVMIRG--LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYP----FVFISCANLLA 134 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~ 134 (566)
..|+-..|+++-.+.. ..|....-.++.+ -.-. |+++.|.+-|+.|.. |+.|-. .|.-..-+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e-G~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE-GDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc-CchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 6788888887766543 2333333334432 2234 899999999999976 333332 22223346788
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChh--HHHHHHHHHHh---cCChhHH
Q 042098 135 LNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-----RDLV--SWNSMISGYSK---MGYAKEA 204 (566)
Q Consensus 135 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~~---~~~~~~a 204 (566)
.+.|.++-+..-..- +.-...+.+++...+..|+++.|+++++.-.. +++. .-..|+.+-.. ..+...|
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 888888877766543 23356788888899999999999999886653 4432 12223322211 2345556
Q ss_pred HHHHHHhHHCCCCCCHHH-HHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHH----HHHHh
Q 042098 205 VELFGRMREEEFLPDEIT-LVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA----RRVFD 279 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~ 279 (566)
.+.-.+..+ +.||-.- -.....++.+.|++.++-.+++.+-+..+.|+.. ++..+.+.|+.... .+-+.
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHH
Confidence 555544433 5666443 2334467889999999999999999988888753 44456677764332 23455
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-hccCChhHHHHHHHHHHHhCCC
Q 042098 280 AMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC-ASIGALDLGKWVDKYASQRGLR 353 (566)
Q Consensus 280 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~ 353 (566)
.|...|..+.-.+..+-...|++..|..--+.... ..|....|..+-+.- ...|+-.++.+.+....+..-.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 66667777887888888888999888776666555 367777777776654 4447777777777666665443
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.88 E-value=0.43 Score=45.42 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH-HH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-SC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~ 454 (566)
..+|.+.+..-.+....+.|..+|-++.+.|. +.++...++.++..++. |+...|..+|+.-... -||...| .-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 56788888888888889999999999999873 56888888888887765 8888999999876654 4554443 45
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+..+.+.++-+.|..+|+....+ .-...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 667778899999999999966543 235788999988888999999999989988887764
No 213
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.024 Score=44.26 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=48.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCc--hHHHHHHHHHHHHh
Q 042098 192 ISGYSKMGYAKEAVELFGRMREEEFLPDE--ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDL--NFYMGSALIDMYGK 267 (566)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 267 (566)
..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++......+.. +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34555667777777777777776655442 234445555566666666666666655543321 11112223334455
Q ss_pred cCCHHHHHHHHhcC
Q 042098 268 CGALVPARRVFDAM 281 (566)
Q Consensus 268 ~g~~~~A~~~~~~~ 281 (566)
.|+.++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 55666555555443
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.68 Score=47.12 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQ 492 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 492 (566)
..|.+--+.-+...|+..+|.++-.+++ .||...|..=+.+++..++|++-+++-+.... +.-|.-+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHH
Confidence 3344445555666777777777765543 56777777777788888888777777766653 455666677788
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
+.|+.++|.+++-+.-. .+ ....+|.+.|++.+|.++
T Consensus 756 ~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHH
Confidence 88888887777655421 11 566777777777777765
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.19 Score=47.22 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=49.4
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcC
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL---GACQKQK 495 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 495 (566)
.+.|.+..|.+.+.+.+ ++.|+ ...|.....+..+.|+..+|+.-.++... .|......++ .++...+
T Consensus 260 fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-cCHHHHHHHHHHHHHHHHHH
Confidence 35577777777776665 33443 34455555666677777777776666653 2333323322 3444556
Q ss_pred CHHHHHHHHHHHHhhC
Q 042098 496 NTDVSQRVMQLLLEIE 511 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~ 511 (566)
++++|.+-++++.+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7777777777776654
No 216
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.81 E-value=0.5 Score=45.10 Aligned_cols=422 Identities=10% Similarity=0.024 Sum_probs=211.2
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCccc------HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHH--HH
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFT------YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT--MY 164 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~ 164 (566)
+-+. +++.+|..+|.+..+.. .-++.. -+.+++++. ..+.+.....+....+.- | ...|-.+.. .+
T Consensus 16 Lqkq-~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQ-KKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHH-hhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3456 89999999999987642 222222 234555554 356666666666665532 2 222333332 24
Q ss_pred HhcCCHHHHHHHHhccCC------------------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCC----CCCCHHH
Q 042098 165 ARCGKLDSARKVFDEIRE------------------RDLVSWNSMISGYSKMGYAKEAVELFGRMREEE----FLPDEIT 222 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t 222 (566)
-+.+++++|.+.+....+ +|...=+..+.++...|.+.++..++++|...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 577889999888765543 122334667888999999999999999886542 3367888
Q ss_pred HHHHHHHhcCCC--------C-------chhHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC--C---HHHHHH
Q 042098 223 LVSVLGSCGDLG--------D-------LVLGKWVEGFVVKN------KMDLNFYMGSALIDMYGKCG--A---LVPARR 276 (566)
Q Consensus 223 ~~~ll~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g--~---~~~A~~ 276 (566)
|+.++-.++++- . ++.+.....++... .+.|.......++....-.. + +-.+.+
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 887444443321 1 12222222222221 22333333333333322211 1 111222
Q ss_pred HHhcC-CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 277 VFDAM-VNKDV-VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP----DKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 277 ~~~~~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
.++.- ..|+- -....++..+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 22211 12221 122233333333 4455554444443322111 2346778888888888888888888777654
Q ss_pred CCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH-HHHHHH---HHhhh
Q 042098 351 GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT-FIGVLS---ACVHA 426 (566)
Q Consensus 351 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t-~~~ll~---~~~~~ 426 (566)
..... ..+.+--..+.+..+...|-..++. ..+=+.++++....+ .|..- ...|+. -+-+.
T Consensus 328 dp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tk----------lr~yL~lwe~~qs~D----iDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 328 DPRIS-VSEKLLLSPKVLQDIVCEDDESYTK----------LRDYLNLWEEIQSYD----IDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred CCcch-hhhhhhcCHHHHHHHHhcchHHHHH----------HHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHhc
Confidence 43322 1122211122222222212111211 222334444444433 23222 122222 23334
Q ss_pred Cc-HHHHHHHHHHhHHhcCCCCC-hhHHHHHH----HHHHhc---CCHHHHHH---HHHhCCCC----CCHHHHHHHHH-
Q 042098 427 GL-VDEGRRLFDLMSSSFGLIPK-SEHYSCMV----DLYARA---GHLSEAWD---FVERMPEK----VDEIVLGALLG- 489 (566)
Q Consensus 427 g~-~~~A~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~----~~~~~~~~l~~- 489 (566)
|. -++|.++++.+.+ +.|. ..+-+.+. .+|..+ ..+.+-+. .+++..-. .+...-|.|..
T Consensus 393 g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred CCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 44 6667777766653 2332 22211111 222211 11222222 22222111 23344455553
Q ss_pred -HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 490 -ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 490 -~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
-+...|++.++.-.-..+.+..| ++.+|..++-++...++|++|..+++.+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 35567888888888777888888 7888888888888888888888888654
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.16 Score=50.41 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 290 NAMITAYAQNGL--SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 290 ~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
+..=.+|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-.+|.+. |.-..|.++
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~-----------G~enRAlEm 667 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS-----------GHENRALEM 667 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc-----------CchhhHHHH
Confidence 333345554443 44556667888888888886543 34456677777777776552 444556666
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhhhCcHHHHHHHHH-----HhHH
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVTFIGVLSACVHAGLVDEGRRLFD-----LMSS 441 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~-----~~~~ 441 (566)
|..+. .| -..+-+...|..++-..+.++-.+.-.++ +|. +....+...|+.++|..+.- ++.-
T Consensus 668 yTDlR-----MF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~li 736 (1081)
T KOG1538|consen 668 YTDLR-----MF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLI 736 (1081)
T ss_pred HHHHH-----HH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHH
Confidence 54433 11 12334445555554444443322111001 121 11223334455554443321 0100
Q ss_pred hcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--
Q 042098 442 SFGLI---PKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG-- 516 (566)
Q Consensus 442 ~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-- 516 (566)
.-+-+ .+..+...+..-+.+...+.-|.++|.+|.+. .++++.....+++++|..+.++.-+.-|+-.-
T Consensus 737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~py 810 (1081)
T KOG1538|consen 737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPY 810 (1081)
T ss_pred HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchH
Confidence 00111 12344444455555666677777777777632 34556667777888887777666554333111
Q ss_pred --------hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 517 --------NYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 517 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
-+...-.+|.+.|+-.+|.++++++...
T Consensus 811 aqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234566667777777777666543
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.76 E-value=0.5 Score=44.39 Aligned_cols=104 Identities=16% Similarity=0.046 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALD 338 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 338 (566)
+..|.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-.++... +-++..|..++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44566667778888888888888778888888888888888888877665432 224477778888888877777
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 398 (566)
+|..+...+ .+..-+..|.+.|++.+|.+.
T Consensus 255 eA~~yI~k~------------------------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 255 EASKYIPKI------------------------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHhC------------------------------ChHHHHHHHHHCCCHHHHHHH
Confidence 666555431 134556677777777777654
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.54 Score=46.89 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=60.9
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
.+-+.++-+++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-+..-
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------HHHhhheeecccchHhHhhhhhCc
Confidence 334444444444445555555556666666777777777776432 235556667788888877766543
Q ss_pred HhcCCCCChhH-----------HHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 441 SSFGLIPKSEH-----------YSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 441 ~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.+.||+.. +.---.+|.++|+-.+|.++++++..
T Consensus 801 ---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 801 ---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 44555321 22223566777777777777777654
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.027 Score=52.70 Aligned_cols=95 Identities=19% Similarity=0.131 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
.++..|.-+|.+.+++.+|++..++.+. .++....--=..++...|+++.|...|+++++.+|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4677788899999999999999998875 36666666667899999999999999999999999999999999888888
Q ss_pred CCChHHH-HHHHHHHHhC
Q 042098 528 LKMWDDS-AKMRALMREK 544 (566)
Q Consensus 528 ~g~~~~A-~~~~~~~~~~ 544 (566)
..++++. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7776666 7788888643
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.53 E-value=0.79 Score=43.76 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFG-LIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVL-GALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~l~~~~ 491 (566)
.|..++.+-.+..-++.|..+|-++.+. + +.+++.++++++.-++ .|+...|.++|+--... ||...| .-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556677777777889999999999887 6 6777889999998665 57889999999876554 776665 3455667
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...+|-+.|..+|+..++.-.. -..+|..++..-..-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7889999999999977765322 256888999999999999888877776654
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.013 Score=54.64 Aligned_cols=67 Identities=13% Similarity=0.001 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..++..+.-++.+.+++..|++.-.+.++.+|+|.-....-+.+|...|+++.|+..|+++.+..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 5577888889999999999999999999999999999999999999999999999999999876543
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.47 E-value=0.071 Score=42.56 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=62.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHh
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG---NYVISSKIFAN 527 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 527 (566)
.....+.|++++|.+.|+.+..+ | ....-..++.++.+.++++.|...+++.++++|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 44456778888888888888764 2 3345566788899999999999999999999887754 33344444445
Q ss_pred CCC---------------hHHHHHHHHHHHhCC
Q 042098 528 LKM---------------WDDSAKMRALMREKG 545 (566)
Q Consensus 528 ~g~---------------~~~A~~~~~~~~~~g 545 (566)
... ...|...|++++++-
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 444 667777777776653
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.02 Score=50.84 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V-DEIVLG 485 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 485 (566)
.|+.-+..+ +.|++..|...|...++. -|+ ...+..|...+...|++++|..+|..+... | -+..+-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~---YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK---YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc---CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 455544433 456677777777777664 222 334455666666666666666665554332 1 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
-|..+..+.|+.+.|...|+++.+..|..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 4445555556666666666666665565544
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.41 E-value=0.59 Score=44.45 Aligned_cols=129 Identities=14% Similarity=0.062 Sum_probs=81.8
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh---------hCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 382 MISALAF---NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH---------AGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 382 li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
..-++.+ .|+.++|+.++..+.... ..+++.||..+.+.|-. ....++|+..+.+.- .+.|+.
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~--~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~ 259 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESD--ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDY 259 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccc
Confidence 3445556 899999999999965555 57888898888776532 224677887777554 445663
Q ss_pred hHHHHHHHHHHhcCC----HHHHHHHH---Hh-CCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 450 EHYSCMVDLYARAGH----LSEAWDFV---ER-MPE------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~----~~~A~~~~---~~-~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
..=-.++..+.-.|. -.+..++- .. ... ..+-.-+.+++.++.-.||.+.|.+..+++.+..|+.-
T Consensus 260 Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 260 YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 322222223333332 12223322 11 111 14555667888999999999999999999999877643
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.039 Score=49.03 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
.|+.-+..+ +.|++..|...|...++..+.-.-....+--|..++...|++++|..+|..+.+.++-.|. +..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577766654 6677999999999999875222223445667889999999999999999999988665555 57888899
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CCHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VDEIV 483 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 483 (566)
....+.|+.++|...|+++.++ |+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999876 65443
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.35 E-value=0.0064 Score=43.69 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--------KVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+|+.+...|...|++++|+..|++... .|+ ..++..+..++...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555555555555554332 122 445566666777777777777777766553
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.32 E-value=0.007 Score=56.16 Aligned_cols=132 Identities=10% Similarity=0.082 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh---cC-CCCCh
Q 042098 378 SWNAMISALAFNGRAHEALLLFER----MSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS---FG-LIPKS 449 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~-~~p~~ 449 (566)
.|..|...|.-.|+++.|+..-+. ..+.|. -......+..+..++.-.|+++.|.+.++..... .| -....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 466666666677889998876543 223331 1123456778888888899999999888765432 01 11223
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-------K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.+..+|.+.|.-..++++|+.++.+-.. + .....+.+|..++...|..++|+.+.+..++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4566788889888999999998876432 2 45678888999999999999999888887764
No 229
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.17 Score=45.71 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC--CCHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG---HLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
+-|...|-.|...|...|+.+.|...|....+.- .+++..+..+..++.... ...++.++|+++... .+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 4567788888888888888888888888877542 233556666666654432 456778888887653 445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
..|...+...|++.+|...|+.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5566788888888888888888888876654
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.24 E-value=0.4 Score=48.02 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPND-----VTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-----~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
...++....=.|+-+.+++.+.+..+.+. +.-.. .+|..++..++. ....+.|.++++.+.+. -|+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 45566666667788888888877665431 11111 223334443333 34678888888888865 5776
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHhCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-H
Q 042098 450 EHYSCM-VDLYARAGHLSEAWDFVERMPEK------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI-S 521 (566)
Q Consensus 450 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l 521 (566)
..|... .+.+...|++++|++.|++.... .....+--+...+...+++++|.+.|.++.+.+.-+..+|.. .
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 555433 35566788999999999876541 122333445566777889999999999999877666665554 4
Q ss_pred HHHHHhCCCh-------HHHHHHHHHHHh
Q 042098 522 SKIFANLKMW-------DDSAKMRALMRE 543 (566)
Q Consensus 522 ~~~~~~~g~~-------~~A~~~~~~~~~ 543 (566)
+.++...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5667788888 888888887753
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=96.24 E-value=0.093 Score=50.52 Aligned_cols=142 Identities=9% Similarity=0.069 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhh---------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHA---------GLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYA 460 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (566)
.+.|+.+|.+...... +.|+ ...|..+..++... .+..+|.+.-++..+. .| |......+..++.
T Consensus 274 ~~~Al~lf~ra~~~~~-ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 274 IYRAMTIFDRLQNKSD-IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHhhccc-CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 5677778888772210 4455 34555554443321 2344555555555533 33 3556666666667
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH--HHHHHHHhCCChHHHHH
Q 042098 461 RAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV--ISSKIFANLKMWDDSAK 536 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 536 (566)
-.++++.|...|++... .| ....|-.....+.-.|+.++|.+.++++++++|.-..+-. ..++.|+.. ..++|.+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 77778888888887654 23 3445555555566678888888888888888876544333 333345544 4555655
Q ss_pred HH
Q 042098 537 MR 538 (566)
Q Consensus 537 ~~ 538 (566)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.10 E-value=0.083 Score=43.47 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS----SFGLIPKSEHY 452 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 452 (566)
.+...++..+...|++++|..+.+.+.... +-+...+..++.++...|+...|.++|+.+.+ ..|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456677788889999999999999999874 56778999999999999999999999988854 35888886653
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.10 E-value=0.87 Score=39.86 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 262 IDMYGKCGALVPARRVFDAMVN--K----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
...+...|++++|.+.|+.+.. | -....-.++.++.+.|++++|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777777777777633 2 1224445666777788888888888877664
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.05 E-value=0.89 Score=44.21 Aligned_cols=98 Identities=8% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC--HHHHHHHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VD--EIVLGALLGACQ 492 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~l~~~~~ 492 (566)
..+..++-+.|+.++|++.++++.+.+...-+..+...|+.++...+.+.++..++.+..+- |. ..+|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44555566677777777777777654221112445666777777777777777777776532 22 233444443333
Q ss_pred hcCC---------------HHHHHHHHHHHHhhCCCC
Q 042098 493 KQKN---------------TDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 493 ~~~~---------------~~~A~~~~~~~~~~~p~~ 514 (566)
..+| -..|.+++.++.+.+|.-
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2332 234567788888877654
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.49 Score=42.67 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGA---LLGACQKQKNT 497 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 497 (566)
.....|++.+|...|+..... .|+ ...--.++.+|...|+.+.|..++..++.+-...-+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567777777777666543 222 45555667777777777777777777765422222222 22333333333
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+...+ ++-...+|+|...-..++..+...|+.++|.+.+=.+.+
T Consensus 220 ~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333332 222334677777777777777777777777776554443
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.96 E-value=1.5 Score=41.26 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=53.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 042098 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARA 462 (566)
Q Consensus 384 ~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 462 (566)
.++.+.|+..++-.+++.+.+.. |.+....... ..+.|+ .+..-+++..+...++|| ....-.+..+-...
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e----PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE----PHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC----CChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 44555566666666666665543 3332222111 122232 222222222222233444 33444455555555
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 042098 463 GHLSEAWDFVERMPE-KVDEIVLGALLGACQKQ-KNTDVSQRVMQLLLE 509 (566)
Q Consensus 463 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 509 (566)
|++..|..--+.... .|....|..|...-... ||-+++.+.+-+.++
T Consensus 343 ~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 343 GEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 665555544443332 25555555555443333 566666655555554
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=1.1 Score=40.55 Aligned_cols=169 Identities=13% Similarity=0.074 Sum_probs=114.2
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 443 (566)
..++++...++....--.-.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+-..
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 3444444443322222233345678899999999999988864 334566677888999999999999999876543
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHH
Q 042098 444 GLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSNSGNYVI 520 (566)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~ 520 (566)
.-.........-+..+.+.....+...+-.+.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 111112223344566666666666666666665556 56666677788899999999998888888764 556778888
Q ss_pred HHHHHHhCCChHHHHH
Q 042098 521 SSKIFANLKMWDDSAK 536 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~ 536 (566)
++.++...|.-+.+..
T Consensus 278 lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 278 LLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHhcCCCCHHHH
Confidence 8888888885554433
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.88 E-value=1.2 Score=39.55 Aligned_cols=164 Identities=14% Similarity=0.118 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.|+.- ..-.+.|++++|.+.|+.+..+.+.-+-...+...++-++.+.++++.|...+++..+.++-.||.. |...+.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 34443 3446789999999999999876532233456667777788899999999999999998876666642 333333
Q ss_pred HHHhc-------CCHH---HHHHHHHhCCCC-------CCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 042098 458 LYARA-------GHLS---EAWDFVERMPEK-------VDEIVL------------GALLGACQKQKNTDVSQRVMQLLL 508 (566)
Q Consensus 458 ~~~~~-------g~~~---~A~~~~~~~~~~-------~~~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~ 508 (566)
+++.- .|.. +|..-|+++..+ ||...- -.+.+-|.+.|.+.-|..-+++++
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33321 2333 333333333332 332211 223467889999999999999999
Q ss_pred hhCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 509 EIESSNSG---NYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 509 ~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+..|+.+. .+..+..+|.+.|-.++|.+.-+-+..
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 98766544 555677889999999999998765544
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.71 E-value=0.062 Score=47.54 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=85.5
Q ss_pred chhHHHHhhcCC--CCCcchHHHHHHHHHcC----CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC--------
Q 042098 68 FNYASLLFHQIS--RPNEYAFNVMIRGLTTA----WQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-------- 133 (566)
Q Consensus 68 ~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------- 133 (566)
+-..++.|...+ ++|-.+|-+.+..+... ++.++-....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344556677775 67888888888777642 2667777788999999999999999999998876532
Q ss_pred --------ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccC
Q 042098 134 --------ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARKVFDEIR 181 (566)
Q Consensus 134 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~ 181 (566)
.-+=+.+++++|...|+.||..+-..|++++.+.+- ..+..++.--|+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223467889999999999999999999999988765 334445544444
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=95.70 E-value=0.42 Score=39.23 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYA 460 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (566)
....-+...|++++|..+|+-+...+ .-+..-+..|...+-..+++++|...|...... + .-|+..+-....+|.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHH
Confidence 34445567889999999998887754 233444455555666678889999888776643 2 234555556778888
Q ss_pred hcCCHHHHHHHHHhCCCCCC
Q 042098 461 RAGHLSEAWDFVERMPEKVD 480 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~ 480 (566)
..|+.+.|.+.|+....+|.
T Consensus 117 ~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 117 LMRKAAKARQCFELVNERTE 136 (165)
T ss_pred HhCCHHHHHHHHHHHHhCcc
Confidence 88888888888888776654
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.51 E-value=0.11 Score=50.01 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----EHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888999999999999999988754 6773 3588899999999999999999988775
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.47 E-value=0.32 Score=38.46 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
.|+..+..+++.+|+..|++..|+++++...+.=+ ++.+..+|..|+.-+..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999876532 77788999999886544
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.38 E-value=2.6 Score=40.18 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=50.9
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHHc---cCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 88 VMIRGLTTAWQKYSHSLKLYYQMKRLG---LKPDNFTYPFVFISCAN---LLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 88 ~ll~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
.++-.|-.. .+++..+++.+.|...- +.-+...-....-++.+ .|+.++|++++..+......+++.++..+.
T Consensus 146 ~lllSyRdi-qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDI-QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhh-hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 333457666 89999999999998741 11111111122334445 789999999998876666678888888777
Q ss_pred HHHH
Q 042098 162 TMYA 165 (566)
Q Consensus 162 ~~~~ 165 (566)
+.|-
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 7763
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.30 E-value=3 Score=40.26 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
++.+.+...|+.+.+..|.....|..++..+.+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 7888999999999999999888888887776654
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.19 E-value=0.91 Score=40.53 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHHHHhcCC--CCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 042098 272 VPARRVFDAMV--NKDVVTWNAMITAYAQ-----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344 (566)
Q Consensus 272 ~~A~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 344 (566)
...++.|.... ++|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|..|+..+-+..-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi------- 123 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI------- 123 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-------
Confidence 34456666665 5688888888887765 356777888899999999999999999999887553211
Q ss_pred HHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 042098 345 KYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424 (566)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~ 424 (566)
....+....--|-+ +-+-+++++++|...| +.||..+-..|+.++.
T Consensus 124 ------------------------------P~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hG--VmPdkE~e~~lvn~FG 169 (406)
T KOG3941|consen 124 ------------------------------PQNVFQKVFLHYPQ--QQNCAIKVLEQMEWHG--VMPDKEIEDILVNAFG 169 (406)
T ss_pred ------------------------------cHHHHHHHHhhCch--hhhHHHHHHHHHHHcC--CCCchHHHHHHHHHhc
Confidence 11122222222322 3467899999999999 9999999999999998
Q ss_pred hhCcH-HHHHHHHHHhH
Q 042098 425 HAGLV-DEGRRLFDLMS 440 (566)
Q Consensus 425 ~~g~~-~~A~~~~~~~~ 440 (566)
+.+-. .+..++.-.|-
T Consensus 170 r~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 170 RWNFPTKKVKRMLYWMP 186 (406)
T ss_pred cccccHHHHHHHHHhhh
Confidence 87653 33444444443
No 246
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.19 E-value=4.9 Score=42.13 Aligned_cols=164 Identities=11% Similarity=0.013 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHHccCChhHHHHHHHHHHHhCCC----C
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNF-----TYPFVFISCANLLALNHGVSVHSSVFKIGLD----E 152 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~ 152 (566)
+..++-.+...+...-.+++.|...+++.....-+++-. .-..++..+.+.+... |...++..++.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 344555555655532277888888888765432222211 1123334444444333 77777776653211 2
Q ss_pred chhHHHHH-HHHHHhcCCHHHHHHHHhccCC-------CChhHHHHHHHHHH--hcCChhHHHHHHHHhHHCC-------
Q 042098 153 DDHVSHSL-ITMYARCGKLDSARKVFDEIRE-------RDLVSWNSMISGYS--KMGYAKEAVELFGRMREEE------- 215 (566)
Q Consensus 153 ~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~------- 215 (566)
-...+..+ +..+...++...|.+.++.+.. +-+..+-.++.+.. +.+..+++++..+++....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22233333 3333333678878877776643 12233333333333 3455667777776663221
Q ss_pred --CCCCHHHHHHHHHHhc--CCCCchhHHHHHHHH
Q 042098 216 --FLPDEITLVSVLGSCG--DLGDLVLGKWVEGFV 246 (566)
Q Consensus 216 --~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 246 (566)
..|...+|..+++.++ ..|+++.+...+..+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1334556666666553 456655665555444
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.16 E-value=1.1 Score=44.36 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHH
Q 042098 263 DMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 342 (566)
+...+.|+++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------------------------- 375 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------------------------- 375 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------------------
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------------------
Confidence 34456677777777666554 455677777777777777777766665432
Q ss_pred HHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 042098 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~ 422 (566)
|..|+-.|...|+.+.-.++.+.....| -++....+
T Consensus 376 ------------------------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--------~~n~af~~ 411 (443)
T PF04053_consen 376 ------------------------------------FSGLLLLYSSTGDREKLSKLAKIAEERG--------DINIAFQA 411 (443)
T ss_dssp ------------------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---------HHHHHHH
T ss_pred ------------------------------------ccccHHHHHHhCCHHHHHHHHHHHHHcc--------CHHHHHHH
Confidence 4555555666677666666666665555 34444555
Q ss_pred HhhhCcHHHHHHHHHHh
Q 042098 423 CVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~ 439 (566)
+...|+.++..+++...
T Consensus 412 ~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 412 ALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHc
Confidence 55567777766666543
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.99 Score=41.36 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCC
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS----CMVDLYARAGH 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 464 (566)
.|++.+|-..++++.+. .+.|...+..-=++|...|+...-...++++... -.|+...|. .+.-++..+|-
T Consensus 116 ~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred cccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34555555556666554 4455566666666677777777766666666543 244433332 23334456777
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhCCChHHHHHHH
Q 042098 465 LSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS----NSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 465 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+++|++.-++..+- .|.-.-.++...+.-.|+..++.++..+-...=.. -..-|...+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777766542 34444455556666667777776665544321111 1223444555666677777777777
Q ss_pred HHHHhCCCccCCc
Q 042098 539 ALMREKGVSKTPG 551 (566)
Q Consensus 539 ~~~~~~g~~~~~~ 551 (566)
+.=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7554434444444
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.12 E-value=0.078 Score=30.46 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666677777777777776666653
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.99 E-value=0.54 Score=43.45 Aligned_cols=163 Identities=8% Similarity=-0.006 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hh
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPN---DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SE 450 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 450 (566)
+|-.+..++-+..++.+++.+-..-..... ..|. .....++..++...+.++++.+.|+...+--.-..| ..
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 455566666666666666665554433210 2221 123344666777778888888888877653111112 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhhC------C
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-------KVDEIVL-----GALLGACQKQKNTDVSQRVMQLLLEIE------S 512 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 512 (566)
++-.|.+.|.+..|+++|.-+..+..+ +.-...| -.+.-++...|....|.+.-+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788899999999999888766554322 1111222 233467888899999998888887752 3
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
-.......++++|...|+.|.|..-++.+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33455567899999999988887766654
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.99 E-value=0.063 Score=30.93 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777765
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=1.6 Score=35.43 Aligned_cols=127 Identities=9% Similarity=0.031 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
...++..+...+.+.....+++.+...+ . .+....+.++..|++.+ ..+....++. ..+.......++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN--S-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC--c-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 5567788888889999999999998876 2 56678888888888764 3444455442 1233344457788
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 459 YARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQ-KNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
+.+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+ +.++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 8888889999999988763 22233334444 788888887775 3466677777766553
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.82 E-value=2.3 Score=36.53 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHH--HHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS--ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
-+.+||-+.--+...|+++.|.+.|+...+.+ |.- .|..+=+ ++.-.|++.-|.+-+...-.. .|+. .|
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD----p~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~D-Pf 168 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----PTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPND-PF 168 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC----Ccc-hHHHhccceeeeecCchHhhHHHHHHHHhc---CCCC-hH
Confidence 35679988888999999999999999998865 321 2222222 344568898888777666543 3332 12
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHH
Q 042098 453 SCM-VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN-------SGNYVISSKI 524 (566)
Q Consensus 453 ~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~ 524 (566)
.+| +-.--+.-++.+|..-+.+--++.+..-|...+-.+.- |+.. -+.+++++.+...++ ..+|..|++-
T Consensus 169 R~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 169 RSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 221 11112344677776544433334555556554433321 2221 233444444433332 4678889999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 042098 525 FANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~ 544 (566)
+...|+.++|..+|+.....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 99999999999999877643
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.76 E-value=7.7 Score=42.24 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=40.6
Q ss_pred CCHHHHHHHHccCCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSW---NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
|+|.+|..+-.++..+-.... ..|+.-+...+++-+|-+++.+.... |. -.+..+++...+++|.++
T Consensus 979 ~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~~-----~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 979 GDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----PE-----EAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred ccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----HH-----HHHHHHhhHhHHHHHHHH
Confidence 556666666655553322222 55666677777777777776665432 22 223445666677777776
Q ss_pred HHHh
Q 042098 436 FDLM 439 (566)
Q Consensus 436 ~~~~ 439 (566)
....
T Consensus 1049 a~~~ 1052 (1265)
T KOG1920|consen 1049 ASKA 1052 (1265)
T ss_pred HHhc
Confidence 6544
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=2.3 Score=42.70 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHhhhCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHH
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACVHAGLVDEGRRLFDLMSSSFGLIP--KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 466 (566)
...+.|.++++.+.+. -|+...|...- +.+...|+.++|++.|+.......-.+ ....+.-+...+.-.++|+
T Consensus 247 ~~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 3456666666666654 25554443332 234456667777766665432101111 1234445555666666777
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHh
Q 042098 467 EAWDFVERMPEK--VDEIVLGALLG-ACQKQKNT-------DVSQRVMQLLLE 509 (566)
Q Consensus 467 ~A~~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~-------~~A~~~~~~~~~ 509 (566)
+|.+.|..+.+. .+...|.-+.. ++...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777766666543 23333333332 22334555 666666666544
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.68 E-value=0.36 Score=37.46 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=53.2
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHhcC
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VD----EIVLGALLGACQKQK 495 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~----~~~~~~l~~~~~~~~ 495 (566)
+....|+.+.|++.|.+.... .+-+...||.-..++--.|+.++|++=+++..+- +. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455667777777777666532 1223566666666666667777776666655431 11 112222334456666
Q ss_pred CHHHHHHHHHHHHhhCCCCch
Q 042098 496 NTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+.+.|..-|+.+-+++.+...
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 667777767666666654433
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=2.6 Score=37.02 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCchh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-------KVDE-IVLGALLGACQKQKNTDVSQRVMQLLLEI----ESSNSGN 517 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~ 517 (566)
..|....+.|.+..++++|-..+.+-.. -++. ..+...+-.+....|+..|+..++.-.+. .|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 3455556667777777777666554332 1222 33445555566667888888888885554 3666777
Q ss_pred HHHHHHHHHhCCChHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~ 538 (566)
...|+.+| ..|+.+++.+++
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77776655 457777777653
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.47 E-value=2.2 Score=34.64 Aligned_cols=113 Identities=7% Similarity=0.056 Sum_probs=63.2
Q ss_pred chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042098 84 YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM 163 (566)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 163 (566)
.....++..+... +.+.....+++.+...+. .+...++.++..+++.. .......++. .++.......++.
T Consensus 8 ~~~~~vv~~~~~~-~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKR-NLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhC-CcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445666777666 777778888887776653 56667777777777543 2233333321 1233334446666
Q ss_pred HHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhc-CChhHHHHHHHH
Q 042098 164 YARCGKLDSARKVFDEIRERDLVSWNSMISGYSKM-GYAKEAVELFGR 210 (566)
Q Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~ 210 (566)
|.+.+-++++.-++..+.. |...+..+... ++++.|.+++.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666666666665532 22233333333 556666665553
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.36 E-value=0.17 Score=39.19 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=76.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCC---chhHHHHHHHHHhCCC
Q 042098 457 DLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE-SSN---SGNYVISSKIFANLKM 530 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 530 (566)
-+++..|+.+.|++.|.+... ......||.-..++.-.|+.++|+.-+++++++. |.. ...|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 467889999999999998754 2467889999999999999999999999999984 443 2356667888999999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 042098 531 WDDSAKMRALMREKGVS 547 (566)
Q Consensus 531 ~~~A~~~~~~~~~~g~~ 547 (566)
-+.|+.-|+..-+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999999888754
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.24 E-value=1 Score=44.58 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=79.3
Q ss_pred CChhHHHHHHH--HHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 042098 98 QKYSHSLKLYY--QMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARK 175 (566)
Q Consensus 98 ~~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 175 (566)
++++++.++.+ ++... + +..-.+.++..+-+.|-.+.|+++-. |+. .-.....+.|+++.|.+
T Consensus 275 ~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALE 339 (443)
T ss_dssp T-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHH
T ss_pred CChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHH
Confidence 67777666654 11111 1 23346677777777777777777632 222 23455567788888888
Q ss_pred HHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchH
Q 042098 176 VFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNF 255 (566)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (566)
+.++.. +...|..|.....+.|+++-|.+.|++..+ |..++-.|...|+.+.-.++.+.....|-
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---- 404 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---- 404 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 777665 556788888888888888888888877642 33334444445555555555444443332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhc
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~ 280 (566)
++.-..++.-.|+.++..+++.+
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333333344555555544433
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.94 E-value=4.2 Score=35.95 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 459 YARAGHLSEAWDFVERMPEK-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
+...++.+++...+.+.... + ....+..+...+...++.+.|...+.......|.....+..+...+...|+++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 34444555555554444332 1 13344444444555555555555555555554443334444444444444455555
Q ss_pred HHHHHHH
Q 042098 536 KMRALMR 542 (566)
Q Consensus 536 ~~~~~~~ 542 (566)
..+++..
T Consensus 257 ~~~~~~~ 263 (291)
T COG0457 257 EALEKAL 263 (291)
T ss_pred HHHHHHH
Confidence 5544444
No 262
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=4.6 Score=35.95 Aligned_cols=135 Identities=7% Similarity=-0.011 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY---- 452 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~---- 452 (566)
..-++++..+.-.|.+.-.+..+.+.++.. .+-++.....|.+.-.+.||.+.|...|++..+..+ ..+....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V 254 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHH
Confidence 356677788888888999999999999876 456777788888888999999999999998776522 3333333
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 453 -SCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 453 -~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
......|.-.+++.+|...+.++... .++...|.-.-+..-.|+..+|.+..+.+.+..|..
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33334566677889999999888764 344444544445556789999999999999988764
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=2.5 Score=38.89 Aligned_cols=173 Identities=10% Similarity=0.043 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHH----HHHHHhhhCcHH
Q 042098 358 CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG----VLSACVHAGLVD 430 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~----ll~~~~~~g~~~ 430 (566)
.|...+|-..++++. +.|..+++..=+++.-.|+.+.-...++++... ..||...|.. +.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777777777776 678888998889999999999999999998865 3466544433 333455789999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVD------EIVLGALLGACQKQKNTDVSQRV 503 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 503 (566)
+|++.-++..+ ++|+ ...-.++...+.-.|++.++.++..+-...-+ ...|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99998877653 3443 45556777888889999999999988765311 11222233345566899999999
Q ss_pred HHHHHh--hCCCCch---hHHHHHHHHHhCCChHHHHH
Q 042098 504 MQLLLE--IESSNSG---NYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 504 ~~~~~~--~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 536 (566)
|++-+- ++.+|.. .|..+-.+......|.+-.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~ 307 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDK 307 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHh
Confidence 987553 3455553 33333444444444444443
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.77 E-value=2.1 Score=35.13 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=45.3
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 501 (566)
.+.++.+++..+++.+.- +.|... .-..-...+.+.|+|.+|+.+|+++... |....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 345666677777766653 355522 1122233456677777777777776654 44444455555555544433344
Q ss_pred HHHHHHHhhC
Q 042098 502 RVMQLLLEIE 511 (566)
Q Consensus 502 ~~~~~~~~~~ 511 (566)
...+++++.+
T Consensus 98 ~~A~evle~~ 107 (160)
T PF09613_consen 98 RYADEVLESG 107 (160)
T ss_pred HHHHHHHhcC
Confidence 4444444443
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.76 E-value=0.26 Score=41.42 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred HHHhhhCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHh
Q 042098 421 SACVHAGLVDEGRRLFDLMSSSFGLIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQK 493 (566)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~ 493 (566)
.-+.+.|++++|..-|...... +++. ...|..-.-++.+.+.++.|++-..+..+- |+ .....--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3577889999999999888764 2222 234555556778888888888877776542 32 1122222356777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH--HHHHHHHhCCC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA--KMRALMREKGV 546 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~g~ 546 (566)
...++.|++-|+++++.+|.....-...+++--......+.. +++.+++..|-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999988887666665555543333333333 34555665553
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.70 E-value=0.15 Score=29.87 Aligned_cols=26 Identities=4% Similarity=0.022 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888889999999998888854
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.68 E-value=0.43 Score=43.29 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
++..++..+...|+++.+...++++... -+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444555555555555555555544432 3444555555555555555555555555544
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.61 E-value=0.16 Score=31.40 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 515 SGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
|.++..++.+|.+.|++++|+++++++.+.....
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4578899999999999999999999999876543
No 269
>PRK11906 transcriptional regulator; Provisional
Probab=93.58 E-value=7.8 Score=37.87 Aligned_cols=118 Identities=9% Similarity=0.073 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---------cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 042098 428 LVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYAR---------AGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQK 495 (566)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 495 (566)
+.+.|..+|.+......+.|+ ...|..+..++.. .....+|.+.-++..+ ..|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456777788887744466777 4455555444332 2234566666665544 356666666666667777
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+.+.|...|+++..++|+...+|...+.++.-.|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 78888888888888888888888888888888888888888888765543
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.58 E-value=2.4 Score=41.37 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
+..++.+.|+.++|.+.++++++..|. +..+...|+.++...+.+.++..++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444445555555555555444332 233444455555555555555554443
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.56 E-value=1.2 Score=41.28 Aligned_cols=122 Identities=11% Similarity=0.231 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc--cC----ChhHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCH
Q 042098 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISCAN--LL----ALNHGVSVHSSVFKIGL---DEDDHVSHSLITMYARCGKL 170 (566)
Q Consensus 100 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~ 170 (566)
+++.+++++.|.+.|++-+..+|-+....... .. ....+..+++.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999988888777654433332 22 34567888888888653 2344455555433 23332
Q ss_pred ----HHHHHHHhccCC-----CCh-hHHHHHHHHHHhc-CC--hhHHHHHHHHhHHCCCCCCHHHHH
Q 042098 171 ----DSARKVFDEIRE-----RDL-VSWNSMISGYSKM-GY--AKEAVELFGRMREEEFLPDEITLV 224 (566)
Q Consensus 171 ----~~A~~~~~~~~~-----~~~-~~~~~li~~~~~~-~~--~~~a~~~~~~m~~~~~~p~~~t~~ 224 (566)
+.++..|+.+.+ .|. .....++ ++... .. ..++.++++.+.+.|+++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iL-aL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHIL-ALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 233334433332 122 2222222 22221 11 235566666666666666555543
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.39 E-value=3.4 Score=33.18 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=75.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
-.....+.|++++|.+.|+.+...-+.-+-....-..|+.++.+.++++.|...++++++.+--.|+ .-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 3445567889999999999998764211223456677888899999999999999999976333333 345555565554
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
-...+..+.-+- . .=...+....|...|+.+++..|++..
T Consensus 95 ~~~~~~~~~~~~-~--------------~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGSLQSFF-R--------------SDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhHHhhhc-c--------------cccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 433322222111 1 111122345788888888888888753
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=3.3 Score=35.08 Aligned_cols=130 Identities=10% Similarity=0.102 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHH--HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----h
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG--VLSACVHAGLVDEGRRLFDLMSSSFGLIPK----S 449 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~ 449 (566)
...|..++.... .+.+ +.....+++.... -+....++.. +...+...|++++|..-++..... ..| .
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n--~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN--GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc--cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 344666655543 3333 5555556665432 1111122222 234466777788887777765532 222 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
.+--.|.+.....|.+++|+..++....+. .......-..++...|+.++|...|+++++.++
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 122344566677778888888777766431 122223334677777788888888877777653
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=4.6 Score=34.25 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL-----GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+...+..+|++++|+..++.....|....+..++ +.....|.++.|+..++...... -.+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHc
Confidence 34567889999999999999888777777766654 66777888888888877654321 1233455678999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 042098 529 KMWDDSAKMRALMREKG 545 (566)
Q Consensus 529 g~~~~A~~~~~~~~~~g 545 (566)
|+-++|+.-|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.25 E-value=0.21 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.24 E-value=0.54 Score=38.45 Aligned_cols=75 Identities=12% Similarity=-0.019 Sum_probs=51.6
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 458 LYARAGHLSEAWDFVERMPE-KVDEIVLGAL-LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
.-.+.++.+++..+++.+.- +|.......+ ...+...|++.+|.++|+.+.+..|..+..-..++.++...|+.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34567788888888887653 3443333322 244667888888888888887777777777777777777777654
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.19 E-value=10 Score=38.07 Aligned_cols=146 Identities=15% Similarity=0.125 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVD 457 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 457 (566)
|-..+.-.-..|+.+-|..++....+-..+-.|....+.+.+ +-..|+++.|..+++.+... . |+ ...-..-+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~ 408 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKIN 408 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHh
Confidence 333444444458888888777766654311223322222222 33467899999999988875 3 55 223333445
Q ss_pred HHHhcCCHHHHH---HHHHhCCC-CCCHHHHHHH----H-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 458 LYARAGHLSEAW---DFVERMPE-KVDEIVLGAL----L-GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 458 ~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~l----~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
..-+.|..+.+. +++..... +-+......+ . --+.-.++.+.|..++.++.+..|++...|..+.+.....
T Consensus 409 ~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 409 WERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 556777777777 44444332 1122222222 1 2234467889999999999999999988888888877766
Q ss_pred C
Q 042098 529 K 529 (566)
Q Consensus 529 g 529 (566)
+
T Consensus 489 ~ 489 (577)
T KOG1258|consen 489 P 489 (577)
T ss_pred C
Confidence 5
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=13 Score=38.99 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCC
Q 042098 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDD--HVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200 (566)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (566)
..-|..+++...++-|..+-+ ..+..++. .......+.+.+.|++++|...+-+-..--. -..+|.-|.....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHH
Confidence 344444555555555554432 22222221 1222333344456777776655543322100 1223444455555
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHH
Q 042098 201 AKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEG 244 (566)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 244 (566)
..+-...++.+.+.|+. +...-+.|+.+|.+.++.+.-.++..
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 55555556666555544 33334456666666666655544433
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.09 E-value=0.26 Score=28.22 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
+|..+...+...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555566666666777777777666666663
No 280
>PRK09687 putative lyase; Provisional
Probab=92.99 E-value=7.5 Score=35.95 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=67.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCCh----hHHHHHHHHhHHCCCCCCHHHHHHHH
Q 042098 152 EDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYA----KEAVELFGRMREEEFLPDEITLVSVL 227 (566)
Q Consensus 152 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~t~~~ll 227 (566)
+|..+....+..+...|..+....+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444455555555433333333333345555555556666666653 3455555555332 23434333444
Q ss_pred HHhcCCCCch--hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHH
Q 042098 228 GSCGDLGDLV--LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG-LSNE 304 (566)
Q Consensus 228 ~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~ 304 (566)
.+++..+... ............-.+++..+-...+.++.+.|+.+....+..-+..+|...-...+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4443332111 011122222222222344444555666666665433333333334444444444444444432 1233
Q ss_pred HHHHHHHHH
Q 042098 305 AIMLFNRMK 313 (566)
Q Consensus 305 a~~~~~~m~ 313 (566)
+...+..+.
T Consensus 193 ~~~~L~~~L 201 (280)
T PRK09687 193 IREAFVAML 201 (280)
T ss_pred HHHHHHHHh
Confidence 444444444
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.99 E-value=0.43 Score=38.23 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=36.3
Q ss_pred hcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 461 RAGHLSEAWDFVERMPE-KV---DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
..++.+++..+++.+.- +| ...++... .+...|++++|.++|+...+..+..+..-..++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 45666666666655532 22 23333222 344556666666666666655555454445555555555553
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.87 E-value=4.1 Score=33.95 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 042098 104 LKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER 183 (566)
Q Consensus 104 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 183 (566)
.+.++.+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|.......+-.+. +....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556667888888888888888888887654444 344455555444333332222 2223333332222222
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVK 248 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 248 (566)
=...+..++..+...|++-+|+++.+...... . ..-..++.+....+|...-..+++...+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-S---VPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-c---CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22356667778888888888888877652221 1 1123345555555554444444443333
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.67 E-value=7.1 Score=34.82 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=96.8
Q ss_pred CCHHHHHHHHccCC------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-------
Q 042098 359 GSIDDALKVFEDMP------VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH------- 425 (566)
Q Consensus 359 ~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~------- 425 (566)
|++++|.+.|+.+. +-...+--.++.++.+.+++++|+..+++.....+ -.||. .|...|.+++.
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-~~~n~-dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-THPNA-DYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-CCCCh-hHHHHHHHHHHhccCCcc
Confidence 55555555555443 11344566677888899999999999999987642 33443 34444444332
Q ss_pred hCcH---HHHHHHHHHhHHhc---CCCCChhH-----------H-HHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHH
Q 042098 426 AGLV---DEGRRLFDLMSSSF---GLIPKSEH-----------Y-SCMVDLYARAGHLSEAWDFVERMPEK-V----DEI 482 (566)
Q Consensus 426 ~g~~---~~A~~~~~~~~~~~---~~~p~~~~-----------~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~ 482 (566)
..|. ..|..-|+.++.++ ...||... + ..+.+-|.+.|.+..|..-+++|.+. | ...
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 2333 34555555555542 11222111 0 12446789999999999999998875 2 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
.+-.+..+|...|-.++|...-+-+....|+++
T Consensus 206 aL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 206 ALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 455566899999999999988666655556654
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.53 E-value=6.5 Score=36.60 Aligned_cols=135 Identities=14% Similarity=0.200 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--cC----ChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCC
Q 042098 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACAS--IG----ALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTN 375 (566)
Q Consensus 302 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 375 (566)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+++.|.+.-.-.. .++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-----------------s~~ 140 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-----------------SPE 140 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc-----------------Ccc
Confidence 45677889999999999888777654333322 11 22344555555554321110 234
Q ss_pred hhHHHHHHHHHHHcCC----hHHHHHHHHHHHhCCCCCCCC-H-HHHHHHHHHHhhhCc--HHHHHHHHHHhHHhcCCCC
Q 042098 376 EVSWNAMISALAFNGR----AHEALLLFERMSKEGGAARPN-D-VTFIGVLSACVHAGL--VDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~g~~~~p~-~-~t~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~p 447 (566)
-.++..++.. ..++ .+.+..+|+.+.+.| +..+ . .....++..+..... ..++.++++.+.+. |+++
T Consensus 141 D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~--f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~ki 215 (297)
T PF13170_consen 141 DYPFAALLAM--TSEDVEELAERMEQCYQKLADAG--FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKI 215 (297)
T ss_pred chhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCcc
Confidence 4455555444 3333 456778888888877 5443 3 333444433322222 55888999999887 9888
Q ss_pred ChhHHHHHHHH
Q 042098 448 KSEHYSCMVDL 458 (566)
Q Consensus 448 ~~~~~~~l~~~ 458 (566)
....|..+.-.
T Consensus 216 k~~~yp~lGlL 226 (297)
T PF13170_consen 216 KYMHYPTLGLL 226 (297)
T ss_pred ccccccHHHHH
Confidence 87777655443
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.38 E-value=20 Score=39.33 Aligned_cols=79 Identities=18% Similarity=0.035 Sum_probs=36.7
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNT 497 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 497 (566)
+.+|...|++.+|..+..++.. .-+ ..+-..|+.-+...++.-+|-++..+....|... +..+++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHH
Confidence 3445555555555555544421 111 1122445555555566666666555555433221 2234444455
Q ss_pred HHHHHHHHHH
Q 042098 498 DVSQRVMQLL 507 (566)
Q Consensus 498 ~~A~~~~~~~ 507 (566)
++|.++....
T Consensus 1043 ~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1043 EEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc
Confidence 5555554443
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.17 E-value=31 Score=41.05 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=79.1
Q ss_pred HHHHccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhc-cCCCChhHHHHHHHHHHhcCChhH
Q 042098 127 ISCANLLALNHGVSVHSSVFKIGL--DEDDHVSHSLITMYARCGKLDSARKVFDE-IRERDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~ 203 (566)
.+--+.+.+..|...++.-..... ......+-.+...|+.-+++|....+... ...++. ++ -|.-....|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--YQ-QILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--HH-HHHHHHhhccHHH
Confidence 344456677777777766311100 11122333444477777777776666653 333332 22 2334455678888
Q ss_pred HHHHHHHhHHCCCCCC-HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 204 AVELFGRMREEEFLPD-EITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
|...|+.+... .|+ ..+++-++......+.++...-..+-......+-....++.=+.+-.+.++++.......
T Consensus 1468 a~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 88888887653 333 455665555555555555544433322222211112222333344456666666666555
Q ss_pred CCChhHHHHH
Q 042098 283 NKDVVTWNAM 292 (566)
Q Consensus 283 ~~~~~~~~~l 292 (566)
..+..+|.+.
T Consensus 1543 ~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 DRNIEYWSVE 1552 (2382)
T ss_pred cccccchhHH
Confidence 3344444443
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.94 E-value=0.31 Score=27.85 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987653
No 288
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.64 E-value=3.5 Score=39.89 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=35.9
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQR 502 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 502 (566)
..|+++.+.+.+...... +.....+..++++...+.|++++|...-+.|... .++.............|-++++..
T Consensus 335 ~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 445555555544443321 2222344444455555555555555544444332 222222222222333344455555
Q ss_pred HHHHHHhhC
Q 042098 503 VMQLLLEIE 511 (566)
Q Consensus 503 ~~~~~~~~~ 511 (566)
.+++...++
T Consensus 413 ~wk~~~~~~ 421 (831)
T PRK15180 413 YWKRVLLLN 421 (831)
T ss_pred HHHHHhccC
Confidence 555555444
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=9.7 Score=33.63 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=98.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--hhHHHHHHHHHHhcC
Q 042098 122 YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERD--LVSWNSMISGYSKMG 199 (566)
Q Consensus 122 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~ 199 (566)
|.....+|....++++|...+.+..+. .+-+...|.+ ...++.|.-+.+++..-+ +..|+-....|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444455666667777777766555432 2323332221 233455555555555432 234666667777777
Q ss_pred ChhHHHHHHHHhHH--CCCCCCHH--HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH
Q 042098 200 YAKEAVELFGRMRE--EEFLPDEI--TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR 275 (566)
Q Consensus 200 ~~~~a~~~~~~m~~--~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 275 (566)
.++.|-..+++.-+ +++.|+.. .|..-+...-..++...|..+ +...-+.+.+...+++|-
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHH
Confidence 77766666655421 23444322 222222222222222222222 334445555666666665
Q ss_pred HHHhcCCC--------CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHhccCChhHHH
Q 042098 276 RVFDAMVN--------KDV-VTWNAMITAYAQNGLSNEAIMLFNRMKYAGV---NPDKITLIGVLSACASIGALDLGK 341 (566)
Q Consensus 276 ~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~ 341 (566)
..|.+-.. ++. ..|-..|-.+....++..|...+++--+.+- .-+..+...|+.+|-. |+.++..
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~ 247 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIK 247 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHH
Confidence 54443311 111 1344555566667788888888887544331 2244566677776643 4444433
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.32 E-value=2.8 Score=35.58 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHH---
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEK-----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSNSGNYV--- 519 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~--- 519 (566)
..+..+..-|++.|+.++|++.|.++.+. .-...+-.+++.+...+++..+.....++...- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556666666666666666666666543 123344555666666667766666666665541 22221111
Q ss_pred -HHHHHHHhCCChHHHHHHHH
Q 042098 520 -ISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 520 -~l~~~~~~~g~~~~A~~~~~ 539 (566)
.-+-.+...|+|.+|.+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 12233455677777777664
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.06 E-value=2.8 Score=38.19 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh----cCCCCChhH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS----FGLIPKSEH 451 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~p~~~~ 451 (566)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..++.+.+. .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 4568888999999999999999999999875 568889999999999999999999999988762 477777666
Q ss_pred HHHHHHH
Q 042098 452 YSCMVDL 458 (566)
Q Consensus 452 ~~~l~~~ 458 (566)
...+...
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 5554444
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.05 E-value=3.5 Score=35.03 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----- 449 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----- 449 (566)
..+..+...|++.|+.+.|++.|.++.+.. ..|.. ..+-.+++.+...+++..+.....+.........|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 468888999999999999999999998865 44443 446677888888899999888888776542221121
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 450 -EHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 450 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
.+|..| .+...+++.+|-+.|-....
T Consensus 115 lk~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 122222 22456788888888777654
No 293
>PRK12798 chemotaxis protein; Reviewed
Probab=90.95 E-value=16 Score=35.28 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=118.0
Q ss_pred CCHHHHHHHHccCC----CCChhHHHHHHHHHH-HcCChHHHHHHHHHHHhCCCCCCCCHHH----HHHHHHHHhhhCcH
Q 042098 359 GSIDDALKVFEDMP----VTNEVSWNAMISALA-FNGRAHEALLLFERMSKEGGAARPNDVT----FIGVLSACVHAGLV 429 (566)
Q Consensus 359 ~~~~~A~~~~~~~~----~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~g~~~~p~~~t----~~~ll~~~~~~g~~ 429 (566)
|+.+++.+.+..+. ++....|-.|+.+-. ...++.+|+++|+...- ..|.... ...-+-.....|+.
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL----laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL----LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH----hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 67777777777765 455667878876644 45689999999999875 3465433 33334456788999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 430 DEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAG---HLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 430 ~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+++..+-....+.|...|-..-| ..+...+.+.+ ..+.-..++..|...-....|..+.+.-...|+.+.|...-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99888887777776666664433 33334444333 455666667777644456788888899999999999999999
Q ss_pred HHHhhCCCC----chhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 506 LLLEIESSN----SGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 506 ~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
++..+...+ ......-+-+-.-..+++++.+.++.+-
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 999875221 1111111222334456777777766553
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.82 E-value=8.5 Score=31.98 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh-HHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYS 453 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~ 453 (566)
...|..-+. +.+.+..++|+.-|..+.+.| ...-+. ..-.........|+...|...|+++... .-.|-.. -..
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg--~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTG--YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHH
Confidence 344555544 456778899999999999877 322111 1112233456789999999999998865 3333321 112
Q ss_pred HHH--HHHHhcCCHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 454 CMV--DLYARAGHLSEAWDFVERMPEK--VD-EIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 454 ~l~--~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
.|= -.+...|.+++.....+.+... |- ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 222 3456788899888888877653 22 23345677777889999999999998876
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.77 E-value=0.48 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.+|..++.+|...|++++|++.++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988754
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=1.4 Score=40.13 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=74.7
Q ss_pred HHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCCC-CCc-----chHHHHHHHHHcCCCChhHHHHHHHHHHHC
Q 042098 44 HTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQISR-PNE-----YAFNVMIRGLTTAWQKYSHSLKLYYQMKRL 113 (566)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 113 (566)
.+.-+..|.+....+...++ ...+++.+...+-++++ |+. .+-.+.++.+.+ -++++++.++..=.+.
T Consensus 52 ~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk--y~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 52 MDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK--YDPQKAIYTLVNPIQY 129 (418)
T ss_pred chhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc--cChHHHHHHHhCcchh
Confidence 34445667777777777766 46778888887776643 221 122334455555 3688888888888889
Q ss_pred CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhC
Q 042098 114 GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIG 149 (566)
Q Consensus 114 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 149 (566)
|+-||.++++.+|+.+.+.+++..|.++...|....
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888887776653
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.42 E-value=7.4 Score=30.66 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
......++.+...|+-++-.+++.++.+.+ .|++.....+..+|.+.|+..++.+++.+.-++ |+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 345666777788888888888888877643 677777788888888888888888888877766 54
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.17 E-value=22 Score=35.81 Aligned_cols=354 Identities=13% Similarity=0.040 Sum_probs=168.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChh-HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLV-SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
+...++.+|.---...+.+.+...++.+.. |... -|......=.+.|..+.+.++|++-+.. ++-+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 334455555444344445666666666654 3333 2344444555678888999999988763 65566666665554
Q ss_pred hc-CCCCchhHHHHHHHHHHh-CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHH---cC---
Q 042098 230 CG-DLGDLVLGKWVEGFVVKN-KMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQ---NG--- 300 (566)
Q Consensus 230 ~~-~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~~--- 300 (566)
+. ..|+.+.....|+..... |.+. +...|...|..-..++++.....+++.+.+-....++..-.-|.+ ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 456777777777776653 3332 333556666666777777777777777766444444443333322 11
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 301 ---LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 301 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
..+++.++-...... ......+ +.+..+-..+...+.+ .+..+++...+.+.
T Consensus 203 ~l~~~d~~~~l~~~~~~~-------------~~~~~~~--~~~e~~~~~v~~~~~~----s~~l~~~~~~l~~~------ 257 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAER-------------SKITHSQ--EPLEELEIGVKDSTDP----SKSLTEEKTILKRI------ 257 (577)
T ss_pred hhcCHHHHHHHhhhHHhh-------------hhccccc--ChhHHHHHHHhhccCc----cchhhHHHHHHHHH------
Confidence 122222222221110 0000000 0000000000000000 01111111111100
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEG-----GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
...--..+............+++-++.- +-.+++..+|...+.--...|+.+...-.|++..-- +..-...|
T Consensus 258 -~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efW 334 (577)
T KOG1258|consen 258 -VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFW 334 (577)
T ss_pred -HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHH
Confidence 0000011111122222222233322210 001223456666666667777777777777766532 11113334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLG-ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
-..++-....|+.+-|..++.....- |+......+-. .+-..|+...|..+++.+.+.-|.....-..-+....+.|
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 44444444447777666666554331 22222222222 2334567777777777777666665555555666677777
Q ss_pred ChHHHH
Q 042098 530 MWDDSA 535 (566)
Q Consensus 530 ~~~~A~ 535 (566)
+.+.+.
T Consensus 415 ~~~~~~ 420 (577)
T KOG1258|consen 415 NLEDAN 420 (577)
T ss_pred chhhhh
Confidence 777776
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.75 E-value=0.8 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..++.+.|+.++|.+.|+++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444455555555555555555444
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.70 E-value=0.49 Score=38.65 Aligned_cols=83 Identities=4% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
|..+.+. +.+.....+++.+...+...+....+.++..|++.++.+...++++ ..+..-...++..+.+.|.
T Consensus 14 i~~~~~~-~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEER-NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp HHHCTTT-T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 4444444 5566666666666654444445555666666666655555555544 1111222334444555555
Q ss_pred HHHHHHHHhcc
Q 042098 170 LDSARKVFDEI 180 (566)
Q Consensus 170 ~~~A~~~~~~~ 180 (566)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544444
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.58 E-value=16 Score=33.25 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+.....|..+|.+.+|.++-++++..+|-+...+..|...+...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444789999999999999999999999999999999999999999888888877764
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.49 E-value=1.4 Score=40.46 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=43.9
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDV 499 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 499 (566)
|.+.|.+++|+..+.... .+.| |+.++..-..+|.+.+++..|..=.+.... +.-...|.--+.+-...|...+
T Consensus 107 yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555554443 2233 444444444555555555444433333221 1112223333334444566677
Q ss_pred HHHHHHHHHhhCCCCch
Q 042098 500 SQRVMQLLLEIESSNSG 516 (566)
Q Consensus 500 A~~~~~~~~~~~p~~~~ 516 (566)
|.+-++..++++|.+..
T Consensus 184 AKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhHHHHHhhCcccHH
Confidence 77777777777777543
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.46 E-value=7.6 Score=31.39 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=23.3
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
.++.+++..+++.+. -+.|+.. .-..-...+...|+|++|+++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555554 2244321 1111223344556666666666665544
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.46 E-value=0.99 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555555544
No 305
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.39 E-value=6.5 Score=33.48 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=60.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPND-----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
..-+...|++++|..-|.+.+.. +++.. ..|..=..++.+.+.++.|+.-....++ +.|+ ......-.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHH
Confidence 34577889999999999988875 33332 2233334466777888888877666553 4554 23333445
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC
Q 042098 457 DLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
.+|.+...+++|+.=|.++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 6788888888888888887653
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.31 E-value=5.2 Score=29.78 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
.-+..+-++.+.... +-|++......+++|.+.+++..|.++|+.++.+.| +....|..++.-
T Consensus 26 ~we~rrglN~l~~~D--lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYD--LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSS--B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 346667777887777 899999999999999999999999999998887633 333477776653
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.28 E-value=0.61 Score=24.84 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHH
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677788888888888887765
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.13 E-value=0.99 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.41 E-value=1 Score=27.13 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999998864
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=11 Score=37.86 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
++++.|..++-.++ ...-+.++..+-+.|-.++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 600 rd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~-----------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 600 RDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALEL-----------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred ccccccccccccCc---hhhhhhHHhHhhhccchHhhhhc-----------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 55555555554444 22345566666667766666543 2332111 1223456777777776644
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 439 MSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.+..|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 32 35567888888888888888888887765 344555555566665555555555554444432
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 042098 519 VISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~ 539 (566)
...+|...|+++++.+++-
T Consensus 727 --AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHH
Confidence 2234555666666666554
No 311
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.03 E-value=5.5 Score=29.31 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
+.-++.+-++.+.... .-|++......+++|.+.+++..|.++|+..+.+.|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~D--lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYD--LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 4456667777777777 8899999999999999999999999999887755332 4446666554
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.86 E-value=2.3 Score=36.58 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVER-MPEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
+.+.-++.+.+.+.+.+|+...+. ++.+|. ...-..++..++-.|++++|..-++-.-++.|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345556777888888888886654 455554 4455667788888899999888888888887765
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.86 E-value=26 Score=33.61 Aligned_cols=68 Identities=6% Similarity=-0.011 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES----SNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
....+|..+...+.+.|.++.|...+.++...++ ..+.+...-++.+...|+.++|.+.++...+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999999999988652 2567777788999999999999999988887333
No 314
>PRK10941 hypothetical protein; Provisional
Probab=87.47 E-value=4.2 Score=37.11 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..+.+-.+|.+.++++.|.+..+.++.+.|+++.-+..-+-+|.+.|.+..|..-++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566788888999999999999999999988888888888999999999988888776653
No 315
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.44 E-value=16 Score=30.55 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
..+++.+...|++-+|.++.+.....+......++.+-.+.++..-=..+++-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666777777777777665444334444555555555554444444443333
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.44 E-value=1.5 Score=40.28 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=73.0
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
+-|.+.|.+++|+..|.....- | +++++..-..+|.+...+..|+.--..++.++.....+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4688999999999999886653 5 7888888888999999999999998999888877777888888888888888888
Q ss_pred HHHHHHHHhC
Q 042098 535 AKMRALMREK 544 (566)
Q Consensus 535 ~~~~~~~~~~ 544 (566)
.+-.+...+.
T Consensus 185 KkD~E~vL~L 194 (536)
T KOG4648|consen 185 KKDCETVLAL 194 (536)
T ss_pred HHhHHHHHhh
Confidence 8877665443
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.05 E-value=0.81 Score=25.75 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 517 NYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
++..++.++.+.|++++|.++++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46678999999999999999999998753
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.96 E-value=0.87 Score=26.19 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=15.9
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHH
Q 042098 446 IPK-SEHYSCMVDLYARAGHLSEAW 469 (566)
Q Consensus 446 ~p~-~~~~~~l~~~~~~~g~~~~A~ 469 (566)
.|+ ...|..+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444 566777777777777777664
No 319
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.71 E-value=25 Score=32.21 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHH-CCCCCCcccHHHHHHHHHc-cC-ChhHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHH
Q 042098 98 QKYSHSLKLYYQMKR-LGLKPDNFTYPFVFISCAN-LL-ALNHGVSVHSSVFK-IGLDEDDHVSHSLITMYARCGKLDSA 173 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~~~~~~A 173 (566)
....+|+.+|+.... ..+-.|..+...+++.... .+ ....--++.+.+.. .|-.++..+...++..+++.++++.-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334555555553222 2244455566666655544 11 22222333333332 23456666777777888888888888
Q ss_pred HHHHhccCC-----CChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 174 RKVFDEIRE-----RDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 174 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
.++++.... .|...|..+|+.....|+..-...+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777776543 467778888888888887655444443
No 320
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.52 E-value=22 Score=31.18 Aligned_cols=201 Identities=16% Similarity=0.093 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYA-GVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDAL 365 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~ 365 (566)
..+......+...+.+..+...+...... ........+..........+....+...+.........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 127 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD------------ 127 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------------
Confidence 45555566666667777666666665542 12223333444444444444444444444443332211
Q ss_pred HHHccCCCCChhHHHHHHH-HHHHcCChHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 366 KVFEDMPVTNEVSWNAMIS-ALAFNGRAHEALLLFERMSKEGGAA--RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~~~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+......... .+...|+++.|...+.+..... . ......+......+...++.+.+...+......
T Consensus 128 ---------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 128 ---------PDLAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 1111222222 6788999999999999986532 1 123344444444567788999999999888764
Q ss_pred cCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 443 FGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 443 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.++ ...+..+...+...+++++|...+...... |+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 197 ---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 ---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 333 567888888888999999999999887764 43 445555555555777899999999999998876
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.36 E-value=1.5 Score=26.95 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|+.+|...|+.+.|++++++....|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4578899999999999999998886543
No 322
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.19 E-value=48 Score=35.87 Aligned_cols=127 Identities=12% Similarity=0.156 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C-C-CHhHHHHHHHHHhccCCh--hHHHHHHHHHHHhCCCCccccCCHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGV-N-P-DKITLIGVLSACASIGAL--DLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p-~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
-|..|+..|...|..++|+++|.+..+..- . + -...+-.++.-+.+.+.. +....+-....+ .+.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~---------~~p~ 576 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN---------KNPE 576 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc---------cCch
Confidence 477788888888888888888888766320 0 0 011222344444444444 444444444433 2333
Q ss_pred HHHHHHccCCCCChhHHH-HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 363 DALKVFEDMPVTNEVSWN-AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
...++|..-......+.+ .-+-.|+.....+-+..+++.+.... -.++..-.+.++..|+.
T Consensus 577 ~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 577 AGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHH
Confidence 444444431100001111 12334566778888999999988765 55677777777777664
No 323
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.03 E-value=49 Score=34.79 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=97.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC-
Q 042098 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP- 372 (566)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~- 372 (566)
..+.-.|+++.|++.+-+ ..+...+.+.+...+..+.-.+-.+... ..+. ..-.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~ll--------------------s~~~~ 320 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLL--------------------SVDPG 320 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-----------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---ccee--------------------eecCC
Confidence 445668999999999887 3334556667666665544332211110 0000 0000
Q ss_pred CCChhHHHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCCCHH-HHHH-HHHHHhhhCcHHHHH-----------HHH
Q 042098 373 VTNEVSWNAMISALAF---NGRAHEALLLFERMSKEGGAARPNDV-TFIG-VLSACVHAGLVDEGR-----------RLF 436 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~~~-t~~~-ll~~~~~~g~~~~A~-----------~~~ 436 (566)
.|...-+..||..|.+ ..++.+|.++|--+.... .|+.. .+.. +-+.....++++.-. -++
T Consensus 321 ~~~~ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~---~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i 397 (613)
T PF04097_consen 321 DPPPLNFARLIGQYTRSFEITDPREALQYLYLICLFK---DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLI 397 (613)
T ss_dssp ------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS----SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HH
T ss_pred CCCCcCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCcccccee
Confidence 1112447788888886 357788888887776543 13322 2222 212222222211111 112
Q ss_pred HHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH-hcCC-----------HHH
Q 042098 437 DLMSSSFGLIPKS----EHYSCMVDLYARAGHLSEAWDFVERMPEKV-DEIVLGALLGACQ-KQKN-----------TDV 499 (566)
Q Consensus 437 ~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~-----------~~~ 499 (566)
++-.+..++..+. .+......-+...|++++|+.+|.-..+-. -....+.++.-.. .... ...
T Consensus 398 ~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~l 477 (613)
T PF04097_consen 398 ERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIEL 477 (613)
T ss_dssp HHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHH
T ss_pred eccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHH
Confidence 2211111233222 233344455678899999999999887421 1233344443222 2222 334
Q ss_pred HHHHHHHHHhh-------CCCCchhHHHHHH-----HHHhCCChHHHHHHHHHH
Q 042098 500 SQRVMQLLLEI-------ESSNSGNYVISSK-----IFANLKMWDDSAKMRALM 541 (566)
Q Consensus 500 A~~~~~~~~~~-------~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 541 (566)
|..+.+..... .+.+..++..|.. -+.+.|+|++|.+.++++
T Consensus 478 a~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 478 AKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 44444433221 1222334444433 367899999998877654
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.01 E-value=29 Score=32.15 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 042098 522 SKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~ 540 (566)
+..+++.++|++|.+.++.
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 3445556666666665553
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.57 E-value=3.1 Score=26.93 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
+.-++.+.|+++.|.+..+.+++.+|+|..+-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567889999999999999999999998765443
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.54 E-value=3.7 Score=30.21 Aligned_cols=39 Identities=3% Similarity=-0.012 Sum_probs=17.3
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 505 QLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344444444444444455555555555444444443
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.49 E-value=0.56 Score=38.32 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=63.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhH
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (566)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777778889999999999999877777888999999999999888888888884433 333455666666777777
Q ss_pred HHHHHHHh
Q 042098 204 AVELFGRM 211 (566)
Q Consensus 204 a~~~~~~m 211 (566)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77766655
No 328
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.91 E-value=6.8 Score=36.65 Aligned_cols=156 Identities=11% Similarity=0.022 Sum_probs=98.1
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh-cCCCCC---hhHHHHHHHHHHhcC
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS-FGLIPK---SEHYSCMVDLYARAG 463 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g 463 (566)
...+.++|+..+.+-...-....-.-.++..+..+.+..|.++++...--.-... ...... -..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665544321001123356777777888888887766442211111 011111 345666777777777
Q ss_pred CHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC----CchhHHHHHHHHHhCCC
Q 042098 464 HLSEAWDFVERMPEKV-------DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SS----NSGNYVISSKIFANLKM 530 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~ 530 (566)
++.+++.+-..-...| ......++..++...+.++++++.|+.+.+.- .+ .-.++..|+..|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 8888887766544321 11233446677888889999999999998863 22 24688899999999999
Q ss_pred hHHHHHHHHHHHh
Q 042098 531 WDDSAKMRALMRE 543 (566)
Q Consensus 531 ~~~A~~~~~~~~~ 543 (566)
+++|.-...++.+
T Consensus 178 ~~Kal~f~~kA~~ 190 (518)
T KOG1941|consen 178 YEKALFFPCKAAE 190 (518)
T ss_pred hhHHhhhhHhHHH
Confidence 9999887766543
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.86 E-value=42 Score=32.98 Aligned_cols=123 Identities=12% Similarity=0.022 Sum_probs=76.3
Q ss_pred HHccCChhHHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHH
Q 042098 129 CANLLALNHGVS-VHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 129 ~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 204 (566)
....||+..|-+ ++.-+....-.|+.....+ ..+...|+++.+...+..... ....+-..+++...+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344567666554 4444443333444444333 345667899998888876654 4566778888888889999999
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCch
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLN 254 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (566)
..+-+-|....++ +..............|-++++...|.++....++.+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9988888765444 333333333333345667777777777766555443
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=58 Score=34.55 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
-++..+.+..+.+.+..+.+..... ++..|..++..+.+.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4556677777788888887777644 777888888888888766666555555544
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.94 E-value=32 Score=30.93 Aligned_cols=208 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHhccCC-------CChhHHHHHHHHHHhcCChhHHHHHHHHh-----HHCCCCCCHHHHHHHHHHhcCC
Q 042098 166 RCGKLDSARKVFDEIRE-------RDLVSWNSMISGYSKMGYAKEAVELFGRM-----REEEFLPDEITLVSVLGSCGDL 233 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~~~~p~~~t~~~ll~~~~~~ 233 (566)
+..++++|+.-|+++.+ -.-.+...+|..+.+.|++++.++.|.+| ..---.-+....+.+++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Q ss_pred CCchhHHHHHHHHHH-----hCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC---------------CCCChhHHHHHH
Q 042098 234 GDLVLGKWVEGFVVK-----NKMDLNFYMGSALIDMYGKCGALVPARRVFDAM---------------VNKDVVTWNAMI 293 (566)
Q Consensus 234 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~li 293 (566)
.+.+....+++.-++ .+-..--.+-+.|...|...|.+.+..++++++ -..=...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Q 042098 294 TAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC-----ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368 (566)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 368 (566)
..|..+.+-.+-..++++.....-.........+|+-| .+.|.++.|. .++-+|.+-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah-----------------TDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH-----------------TDFFEAFKNY 261 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH-----------------hHHHHHHhcc
Q ss_pred ccCCCCChhH---HHHHHHHHHHcC
Q 042098 369 EDMPVTNEVS---WNAMISALAFNG 390 (566)
Q Consensus 369 ~~~~~~~~~~---~~~li~~~~~~~ 390 (566)
++...|-..+ |-.|...+.+.|
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcC
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.86 E-value=8.4 Score=33.04 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhCCCh
Q 042098 459 YARAGHLSEAWDFVERMPEKV---DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE----SSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 531 (566)
..+.|+ ++|.+.|-.+...| ++...-.|.. |....|.++++.++-+++++. ..|+.++..|+.++.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 345555 67777777776653 3444444444 444678899999999998874 34688999999999999999
Q ss_pred HHHH
Q 042098 532 DDSA 535 (566)
Q Consensus 532 ~~A~ 535 (566)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.73 E-value=2.3 Score=23.05 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444455555554444443
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.46 E-value=1.5 Score=36.54 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 482 IVLGALLGACQKQK----N-------TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 482 ~~~~~l~~~~~~~~----~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
.++..+..++...+ + +++|...|+++...+|.|. +. -......++|-++..++.+.+...
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-----~Y--~ksLe~~~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-----LY--RKSLEMAAKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-----HH--HHHHHHHHTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-----HH--HHHHHHHHhhHHHHHHHHHHHhhh
Confidence 45555555554433 2 4445555555555666652 22 122234456666666666665443
No 335
>PRK09687 putative lyase; Provisional
Probab=83.39 E-value=38 Score=31.37 Aligned_cols=236 Identities=12% Similarity=-0.009 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLS----NEAIMLFNRMKYAGVNPDKITLIGVLS 329 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~ 329 (566)
+..+....+..+...|..+....+..-...+|...-...+.++.+.|+. .++...+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 4444445555555555443333333333445666666666677777653 4566667666433 344444444455
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc-CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 042098 330 ACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED-MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA 408 (566)
Q Consensus 330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 408 (566)
++...+..... ....+...+.. +..++..+-...+.++.+.++ +.+...+-.+.+.
T Consensus 114 aLG~~~~~~~~-------------------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--- 170 (280)
T PRK09687 114 ATGHRCKKNPL-------------------YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD--- 170 (280)
T ss_pred HHhcccccccc-------------------cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---
Confidence 54443321100 00111111111 112355556667777777776 4566666666643
Q ss_pred CCCCHHHHHHHHHHHhhhC-cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 042098 409 ARPNDVTFIGVLSACVHAG-LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL 487 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 487 (566)
++...-...+.++...+ ....+...+..+.. .++..+-...+.++.+.|+ .+|+..+-+....++ .....
T Consensus 171 --~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a 241 (280)
T PRK09687 171 --PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT--VGDLI 241 (280)
T ss_pred --CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc--hHHHH
Confidence 34444444445555432 23455555555543 4566677778888888888 456665555554444 23456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
+.++...|+. +|...+..+.+..| |..+-....+++
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 7788888884 68888888887666 444444443433
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.04 E-value=30 Score=35.02 Aligned_cols=130 Identities=17% Similarity=0.086 Sum_probs=66.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChh
Q 042098 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202 (566)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (566)
+.+...+.++|..++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|.++....+++.
T Consensus 618 t~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccch
Confidence 3445555555555555553 222221 1222345567777766654432 4556777777777777777
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 203 EAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
.|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |.-..+|...|+++++.+++..-
T Consensus 684 lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 684 LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 77777765543 233444444445544433333333333322 22233444555555555555443
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=4 Score=35.85 Aligned_cols=60 Identities=13% Similarity=-0.029 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
-+++...|++-++++.-..++...|.|..+|..-+.+....=+.++|..-|.+..+...+
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 355556677777777777777777777777777777777777777777777766665443
No 338
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.76 E-value=53 Score=32.54 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=83.6
Q ss_pred HHHCCCCCCccc--HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhccCCC--
Q 042098 110 MKRLGLKPDNFT--YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH--VSHSLITMYARCGKLDSARKVFDEIRER-- 183 (566)
Q Consensus 110 m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~~~~~-- 183 (566)
+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. ...+-+...+..|+.+.+..+++.-...
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 96 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence 334455544322 233344444555544 333334445444322 1122344555667777666666543321
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHH--HHHHHHhcCCCCchhHHHHHHHHHHhCCCchHH--H
Q 042098 184 --DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITL--VSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFY--M 257 (566)
Q Consensus 184 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 257 (566)
+..-. +.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.+..+ .+.|..++.. .
T Consensus 97 ~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~ 167 (413)
T PHA02875 97 VFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCC 167 (413)
T ss_pred cccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCC
Confidence 11111 222233344544 344444555555543211 1233333445555544433 3344332211 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMVNKDVV---TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDK 321 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 321 (566)
-.+-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 168 g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 112333445567777666666654333221 1123333334555543 44445556666653
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.51 E-value=10 Score=28.04 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 042098 99 KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146 (566)
Q Consensus 99 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (566)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334555556666666777777777777777777777777777777665
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=35 Score=30.14 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=13.3
Q ss_pred HHhhhCcHHHHHHHHHHhHHh
Q 042098 422 ACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~ 442 (566)
.-...+++.+|+.+|++..+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777766654
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.08 E-value=13 Score=31.98 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHHhcCCHHHH
Q 042098 393 HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--GLIPKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 393 ~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 468 (566)
+.|.+.|-.+...+ . .+....-..+..|....+.+++.+++....+.. +-.+|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~--~-l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTP--E-LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCC--C-CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56777777776665 3 233333333444444567777777777666532 2245567777777777777777665
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.54 E-value=46 Score=34.96 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR- 461 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 461 (566)
...+.-.|+++.|.+++-+. .+ ...+.+.+.+.+..|.-.+-.+... ..+.....-.|.+--+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~--~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EF--NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T---HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHhh--cc--CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 34556688999999888772 22 3455665555554433221111111 2221110111122456677777764
Q ss_pred --cCCHHHHHHHHHhCCC
Q 042098 462 --AGHLSEAWDFVERMPE 477 (566)
Q Consensus 462 --~g~~~~A~~~~~~~~~ 477 (566)
..+..+|++++--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 3567788887766654
No 343
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.64 E-value=0.96 Score=41.67 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 463 GHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
|.+++|++.|...... +....|.--.+++.+.++...|++=+..+++++|++..-|-.-..+..-.|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4444444444444332 22222222334444445555555555555555555544444444455555555555555555
Q ss_pred HHhCCCc
Q 042098 541 MREKGVS 547 (566)
Q Consensus 541 ~~~~g~~ 547 (566)
..+.++.
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 5444443
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.53 E-value=33 Score=28.71 Aligned_cols=130 Identities=9% Similarity=-0.001 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHH--
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGAL-- 487 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-- 487 (566)
...+|...++ +.+.+..++|...|..+.+. |...-+. .--.........|+...|...|+++-.. +.+....-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3344444443 34556677777777777665 4433322 1223345566777888888888777543 222222111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 488 ---LGACQKQKNTDVSQRVMQLLLEI-ESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 488 ---~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...+...|.++....-.+.+-.- +|--.+.-..|+-+-.+.|++.+|.+.|+++..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 13345666666665554444322 244445556677777778888888888777654
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.24 E-value=89 Score=33.53 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH---HHHHHH--HHhhhCcHH--HHHHHHHHhHHhcCCC
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT---FIGVLS--ACVHAGLVD--EGRRLFDLMSSSFGLI 446 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t---~~~ll~--~~~~~g~~~--~A~~~~~~~~~~~~~~ 446 (566)
+.+..+..+..+..-.|++++|..+.+...+.- -.-+... +..+.. .+...|... +....|......+...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 456677788888888999999999887765532 1223332 233322 255567433 3333343333321111
Q ss_pred CC-----hhHHHHHHHHHHhc-CCHHHHHHHHHhCCCC---CCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhhCCCC-
Q 042098 447 PK-----SEHYSCMVDLYARA-GHLSEAWDFVERMPEK---VDEIVLG--ALLGACQKQKNTDVSQRVMQLLLEIESSN- 514 (566)
Q Consensus 447 p~-----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 514 (566)
.. ..++..+..++.+. +...++..-++-.... |-..... .|+......||.+.|...++++......+
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 11 23444555555551 1122222222222111 2222222 56688888999999999999988764222
Q ss_pred c-hhHH-----HHHHHHHhCCChHHHHHHHHH
Q 042098 515 S-GNYV-----ISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 515 ~-~~~~-----~l~~~~~~~g~~~~A~~~~~~ 540 (566)
+ ..|. .-.......|+.+.+...+.+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 2222 222334567888888887665
No 346
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.11 E-value=5 Score=22.18 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 495 KNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888877654
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.20 E-value=3.8 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
..|..+...+...|+++.|...+++.++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567788889999999999999999988766
No 348
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.57 E-value=2.2 Score=36.62 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=74.0
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALL--GACQKQKNTDV 499 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~ 499 (566)
|-..|-..-|..=|.+.. .+.|+ +.+||.|.--+...|+++.|.+.|+...+-....-|..+= -++.-.|+++.
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 556677777777776665 56888 6788888888899999999999999887632222232222 23445689999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHh--CCChHHHHHHH
Q 042098 500 SQRVMQLLLEIESSNSGNYVISSKIFAN--LKMWDDSAKMR 538 (566)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~ 538 (566)
|.+-+.+.-+.+|.||. ..| +.|.. .=+..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf--R~L-WLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF--RSL-WLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH--HHH-HHHHHHhhCCHHHHHHHH
Confidence 99888888888888763 222 33333 33455555533
No 349
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.17 E-value=8.6 Score=33.82 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=53.9
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHH-HHHHHHhcCCHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEH-YSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGA-LLGACQKQKNTDV 499 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~ 499 (566)
|.....++.|+..+.+.+ -+.|++.+ |..=+-.+.+.++|+.+..=-.+..+ .|+...-.. +.........++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444555666666555554 34666533 34444555556666555443333322 233332222 2344445555666
Q ss_pred HHHHHHHHHhhC-----CCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 500 SQRVMQLLLEIE-----SSNSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 500 A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
|+..+.++..+. |.-..+...|..+-...=...+..++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666666664431 22233444444443333333444444443
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.99 E-value=26 Score=26.13 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 042098 134 ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMRE 213 (566)
Q Consensus 134 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 213 (566)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+....-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456777777766654422 233333444567788999999999999988999999887543 66777777777777766
Q ss_pred CCCCCCHHHH
Q 042098 214 EEFLPDEITL 223 (566)
Q Consensus 214 ~~~~p~~~t~ 223 (566)
.| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 64 3333444
No 351
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.75 E-value=1.8e+02 Score=35.24 Aligned_cols=66 Identities=6% Similarity=-0.170 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
....+|-...+.++..|.++.|...+-.+.+.. -+.++...+..+...|+...|..++++..+...
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 346789999999999999999999988888766 346888999999999999999999999886544
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.64 E-value=39 Score=27.43 Aligned_cols=80 Identities=8% Similarity=0.077 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC---------CChhHHHHHHHHHHhcCC-hhHHHHHHHHhHHCCCCCCHHHHHHH
Q 042098 157 SHSLITMYARCGKLDSARKVFDEIRE---------RDLVSWNSMISGYSKMGY-AKEAVELFGRMREEEFLPDEITLVSV 226 (566)
Q Consensus 157 ~~~li~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (566)
.|.++.-.+..+.+.....+++.+.. .+-.+|++++++.....- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34445444545555555555554431 345678888888865555 34567788888888888888889888
Q ss_pred HHHhcCCCCc
Q 042098 227 LGSCGDLGDL 236 (566)
Q Consensus 227 l~~~~~~~~~ 236 (566)
+.++.+....
T Consensus 122 i~~~l~g~~~ 131 (145)
T PF13762_consen 122 IKAALRGYFH 131 (145)
T ss_pred HHHHHcCCCC
Confidence 8887765333
No 353
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.53 E-value=1.1e+02 Score=32.26 Aligned_cols=156 Identities=10% Similarity=-0.087 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc-----------CC
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF-----------GL 445 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----------~~ 445 (566)
....--+......++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+.... |.
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~ 389 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGE 389 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCC
Confidence 334444445557777777777777775432 2233334445566566777777777777664321 11
Q ss_pred CCC------hhH--------HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 446 IPK------SEH--------YSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 446 ~p~------~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
.+. +.. --.-+..+...|+..+|...+..+....+......+.....+.|..+.+..........+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~ 469 (644)
T PRK11619 390 EYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWD 469 (644)
T ss_pred CCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHH
Confidence 100 000 011234455667777777777666555555566666666667777777776665443211
Q ss_pred ---CCCchhHHHHHHHHHhCCChHHHH
Q 042098 512 ---SSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 512 ---p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
-..|..|...+..+.+.-..+.+.
T Consensus 470 ~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 470 HLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 012233444444444444455444
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.27 E-value=32 Score=25.71 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=47.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042098 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 326 (566)
-+..+...|++++|..+.+...-||...|-+|-. .+.|-.++...-+.+|..+| .|...+|..
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456778899999999999999999999977754 46777787777787887776 455455443
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.82 E-value=11 Score=31.55 Aligned_cols=95 Identities=9% Similarity=0.134 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHH---HHHHHhhhCc-------HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIG---VLSACVHAGL-------VDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYA 460 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~---ll~~~~~~g~-------~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 460 (566)
++.|.+.++.-...+ +.|...++. .+.-+++... +++|+.-|++.. .+.|+ ..++..+..+|.
T Consensus 7 FE~ark~aea~y~~n---P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL---~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN---PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL---KINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHH
Confidence 455666666544443 334443333 3333333333 334444444444 45787 467778887776
Q ss_pred hcC----C-------HHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 042098 461 RAG----H-------LSEAWDFVERMPE-KVDEIVLGALLGACQ 492 (566)
Q Consensus 461 ~~g----~-------~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 492 (566)
..+ + +++|.+.|++... +|+...|+.-+..+.
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 554 3 3444444444433 488888888777764
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.09 E-value=9.8 Score=26.88 Aligned_cols=45 Identities=4% Similarity=-0.043 Sum_probs=18.2
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWD 470 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 470 (566)
.+..+.|+..|....++..-.|+ -.++..++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444443111111 1233444444444444444443
No 357
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.92 E-value=75 Score=29.40 Aligned_cols=62 Identities=8% Similarity=-0.099 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 288 TWNAMITAYAQNGLS---NEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 288 ~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
+...++.+|...+.. ++|..+++.+...... ....+..-+..+.+.++.+....++..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455566666665553 3455555555443211 1233334444554455555555555555553
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.68 E-value=9.2 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 042098 382 MISALAFNGRAHEALLLFERMSKEG 406 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g 406 (566)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667778888888888888877654
No 359
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.70 E-value=38 Score=25.44 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=34.8
Q ss_pred HHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 467 EAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 467 ~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+..+-++.+.. -|++....+.+.+|.+.+|+..|.++++-+...-.+....|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 34444444433 38888888888999999999999999888876544433356555
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.67 E-value=15 Score=27.22 Aligned_cols=53 Identities=0% Similarity=0.043 Sum_probs=37.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC----C-----chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESS----N-----SGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
..+.||+..|.+.+.+....... . ......++.++...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888887777777654211 1 23445577888899999999999888864
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.55 E-value=69 Score=28.39 Aligned_cols=92 Identities=8% Similarity=-0.017 Sum_probs=47.9
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCCC-----CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH------
Q 042098 454 CMVDLYARA-GHLSEAWDFVERMPE-----KVDEI---VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY------ 518 (566)
Q Consensus 454 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~------ 518 (566)
.+...|-.. .++++|+..|+..-+ +.+.. .+.-...--...+++.+|+.+|++.....-+|+-.-
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444433 566666666665432 11111 222222334456889999999999987654443222
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 519 -VISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 519 -~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..-+-++.-..+.=.+...+++-.+..
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 222233333355555566666555543
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.47 E-value=38 Score=27.51 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=50.0
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHccCC-hhHHHHHHHHHHHhCCCCchhHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLG-----LKPDNFTYPFVFISCANLLA-LNHGVSVHSSVFKIGLDEDDHVSH 158 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~ 158 (566)
..|+++.-.+.. +++...+.+++.+.... -..+...|++++.+..+... --.+..+|..+.+.+.++++.-|.
T Consensus 41 fiN~iL~hl~~~-~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASY-QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHc-cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 356666666665 66776666666663311 02355667777777755554 344566677777666677777777
Q ss_pred HHHHHHHhc
Q 042098 159 SLITMYARC 167 (566)
Q Consensus 159 ~li~~~~~~ 167 (566)
.+|..+.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 777665543
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.22 E-value=1.4e+02 Score=31.67 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=40.4
Q ss_pred HHccCChhHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhH
Q 042098 129 CANLLALNHGVSVHSSVFKIGLDE---DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (566)
+.+.+.+++|..+-+... |..| -..+...+|..+.-.|++++|-...-.|...+..-|--.+..+...++...
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 334445555555443322 2222 233455666666667777777766666666666666666666655555444
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.81 E-value=61 Score=29.55 Aligned_cols=88 Identities=19% Similarity=0.100 Sum_probs=56.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY--- 459 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~--- 459 (566)
|++++..+++.+++...-+--+.-.+++| .....-|-.|.+.+....+.++-....+. .-+-+...|.+++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 78888889998888776555433211333 34444455678888888888887777654 1122234477766555
Q ss_pred --HhcCCHHHHHHHHH
Q 042098 460 --ARAGHLSEAWDFVE 473 (566)
Q Consensus 460 --~~~g~~~~A~~~~~ 473 (566)
.-.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 45688888888774
No 365
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.29 E-value=39 Score=26.75 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhh--CCCCchhHHHHHHHHHhCCChHHHHHHHHH
Q 042098 499 VSQRVMQLLLEI--ESSNSGNYVISSKIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 499 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (566)
.+.++|+.|... +...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788888888875 466778899999999999999999999875
No 366
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.88 E-value=39 Score=31.26 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=66.6
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCh-----hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHH
Q 042098 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDL-----VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEI 221 (566)
Q Consensus 148 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 221 (566)
.|...+..+...++.......+++.++..+-.+.. |+. .+-.+.++.+. .-++++++.++..=..-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 34444555555666655556777777777766653 221 12223333333 345678888887777888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNK 250 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 250 (566)
+++.+|+.+.+.+++..|.++.-.+....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777766655543
No 367
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.07 E-value=46 Score=25.27 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=53.2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 042098 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGR 210 (566)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (566)
.....++|..+.+.+...+- ....+--..+..+.+.|++++|+..=.....||...|-+|- -.+.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34567788888888887653 23334444556677889999996555556668888887764 4477888888888887
Q ss_pred hHHCC
Q 042098 211 MREEE 215 (566)
Q Consensus 211 m~~~~ 215 (566)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76554
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.00 E-value=34 Score=26.77 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 394 EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 394 ~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
+..+-++.+...+ +-|++......+++|.+.+|+..|.++|+-++.+. .+....|..+++
T Consensus 67 EvrkglN~l~~yD--lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYD--LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccc--cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Confidence 4556667777777 88999999999999999999999999998887652 222334655553
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.70 E-value=1.3e+02 Score=30.23 Aligned_cols=161 Identities=13% Similarity=0.053 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
..-+++..+..+....-+..+-.+|..-| -+...|..++.+|... ..+.-..+|+++.+..+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-------------- 130 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-------------- 130 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--------------
Confidence 34445555555555555555555555533 2444555555555544 333333444444433222
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH------HHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND------VTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~------~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
|++.-..|...|-+ ++.+.+..+|.++...- -|.. ..|.-|... -..+.+...++...+..
T Consensus 131 -------Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf---I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt 197 (711)
T COG1747 131 -------DVVIGRELADKYEK-IKKSKAAEFFGKALYRF---IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQT 197 (711)
T ss_pred -------hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh---cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHH
Confidence 22222233333333 55555555665554431 2211 122222211 13456666666666666
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 442 SFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
..|...-...+.-+-.-|....++.+|++++..+.+.
T Consensus 198 ~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 198 KLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred hhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 6555555666666777777888888888888876653
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.47 E-value=50 Score=29.11 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHH-------HHHHHHHHHhhC--CC----CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 485 GALLGACQKQKNTDV-------SQRVMQLLLEIE--SS----NSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
.-+...|...|+.+. |.+.|+++.+.+ |. ...+...++.+..+.|++++|.+.+.++...+-.
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 334455556666443 444444444432 22 2456677888888999999999998888765443
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.14 E-value=98 Score=28.75 Aligned_cols=150 Identities=8% Similarity=-0.047 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA--- 462 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 462 (566)
.+..+|..+|+.+.+.| . ......|...+.. ..+..+|...++...+. |..+.......+...|..-
T Consensus 91 ~~~~~A~~~~~~~a~~g--~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 91 RDKTKAADWYRCAAADG--L---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQA 164 (292)
T ss_pred ccHHHHHHHHHHHhhcc--c---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhh
Confidence 45777888888777665 2 2222223333333 33778888888888776 6544322234444444433
Q ss_pred --C--CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC-----
Q 042098 463 --G--HLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK----- 529 (566)
Q Consensus 463 --g--~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----- 529 (566)
- +...|...+.+.-...+......+...|.. ..|.++|...|.++.+.+. ......+. ++...|
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchh
Confidence 1 233677778777665555555555555433 3478899999999988776 45555555 666555
Q ss_pred ----------ChHHHHHHHHHHHhCCCcc
Q 042098 530 ----------MWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 530 ----------~~~~A~~~~~~~~~~g~~~ 548 (566)
+...|...+......|...
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 7778888888777766643
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.75 E-value=32 Score=27.43 Aligned_cols=73 Identities=18% Similarity=0.078 Sum_probs=49.8
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-C-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 446 IPKSEHYSCMVDLYARAGH---LSEAWDFVERMPE-K-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
.++..+--.+..++.+..+ ..+-+.+++++.. . | .....--|.-++.+.++++.+.++.+.+++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5556666677777777665 4455667777664 2 2 223333455678888999999999999999888876543
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.23 E-value=57 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 374
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.19 E-value=1.7e+02 Score=30.40 Aligned_cols=79 Identities=9% Similarity=0.000 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC---CChHHHHH
Q 042098 464 HLSEAWDFVERMPEKVDEIVLGALLGACQKQ----KNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL---KMWDDSAK 536 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~ 536 (566)
+.+.+...+.+...+.+......+...|..- .+.+.|...+..+.... ......++..+..- ..+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 4455555555555444455544454444332 35777777777776655 55555666555532 12567777
Q ss_pred HHHHHHhCC
Q 042098 537 MRALMREKG 545 (566)
Q Consensus 537 ~~~~~~~~g 545 (566)
++++..+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 777776543
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.95 E-value=17 Score=25.72 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHH---HHHHHHHhCCChHHHHHH
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYV---ISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 537 (566)
..++.+.|+..++.+++..++.+.-+. .|+.+|+..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777776555444333 455667777777777664
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.94 E-value=25 Score=30.32 Aligned_cols=34 Identities=9% Similarity=-0.054 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
|++..+..++.++...|+.++|.+..+++....|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 377
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.71 E-value=14 Score=32.35 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=31.8
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.+.+|.+.|.+++.+++++-|.....|..++..-.+.|+++.|.+.+++..+.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 3445555556666666665565555566666666666666666666655555443
No 378
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.91 E-value=1.5e+02 Score=29.37 Aligned_cols=41 Identities=24% Similarity=0.131 Sum_probs=25.8
Q ss_pred HHHHHHHHHHh---cCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 042098 187 SWNSMISGYSK---MGYAKEAVELFGRMREEEFLPDEITLVSVL 227 (566)
Q Consensus 187 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 227 (566)
.+..++.++.+ .++++.|+..+..|.+.|..|....-..+.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34444555554 477888888888888887776644433333
No 379
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.71 E-value=1.1e+02 Score=27.88 Aligned_cols=158 Identities=15% Similarity=0.037 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHH----HHhHHCCCCCCHHHHHHHHHHhcCCCCch-hHH
Q 042098 166 RCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF----GRMREEEFLPDEITLVSVLGSCGDLGDLV-LGK 240 (566)
Q Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~ 240 (566)
+++++++|.+++.. -...+.+.|+...|-++- +-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665432 123444555554444433 22334455556555555554444332211 223
Q ss_pred HHHHHHHHh---C--CCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 241 WVEGFVVKN---K--MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 241 ~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
.+...+++. + ..-+......+...|.+.|++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 333333332 2 1235566778888999999999998887655444444333344333334433333
Q ss_pred CCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHH
Q 042098 316 GVNPDKITLIGVLSACASIGALDLGKWVDKYASQ 349 (566)
Q Consensus 316 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 349 (566)
+...-..+ --|...+++..|...+....+
T Consensus 141 ----dlfi~RaV-L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ----DLFIARAV-LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----HHHHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred ----hHHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 11111222 234445666666665554443
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.27 E-value=1.2e+02 Score=27.97 Aligned_cols=98 Identities=10% Similarity=0.144 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHhh-hC-cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHH
Q 042098 409 ARPNDVTFIGVLSACVH-AG-LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK----VDEI 482 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~-~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 482 (566)
+--|......+++.... .+ ....-.++.+.+...++-.++..+...++..++..++|.+-.++++..... .|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 34455555555554443 11 223333444444444455666667777777777777777777777665432 4666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQL 506 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~ 506 (566)
.|..++..-.+.||..-...+..+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777777777777776555554443
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.47 E-value=20 Score=36.06 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=60.6
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVS 500 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 500 (566)
..|+...|...+..... ..|. ....-.|...+.+.|...+|-.++.+... -..+.++-.+.+++.-..+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35667777776665542 2343 22334455666666666666666655432 13445566666777777778888
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 501 QRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
++.|+.+++..|.++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888887777777766666554433
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.41 E-value=54 Score=23.80 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHH
Q 042098 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (566)
+.++++.+.+.|+- +......+-..-...|+.+.|.+++..+. +....|..++.++-..|+-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 33455555555532 22222222222224467777777777777 6666777777777766655443
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.31 E-value=32 Score=32.11 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK----V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
.|.-=.+-|.+.+++..|...|.+.... | +.+.|+.=..+-...|++..++.=..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444456678889999999999876653 2 345566656666677999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHH
Q 042098 525 FANLKMWDDSAKMRA 539 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~ 539 (566)
+....++++|....+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999666655443
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.47 E-value=1.1e+02 Score=26.90 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSC 454 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~ 454 (566)
.+.-++.+.+.+...+++...++-.+.. +.|..+-..+++.+|-.|++++|..-++...+ +.|+ ..+|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 4455677788889999999888877764 44556667788889999999999887776653 3444 456666
Q ss_pred HHHH
Q 042098 455 MVDL 458 (566)
Q Consensus 455 l~~~ 458 (566)
++.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 6654
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.21 E-value=6.5 Score=38.29 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=65.7
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-SCMVDLYARAGHLSEAWDFVERMPE-KVD-EIVLGALLGACQKQKN 496 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 496 (566)
+..+...+.++.|..++.++++ +.||...| ..=..++.+.+++..|+.=..+..+ .|+ ...|.-=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4456677888888888888874 47774443 3333677788888888775555543 232 2333333456667778
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+.+|...|+......|+++..-..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 8888888888888888877655444
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.97 E-value=85 Score=25.14 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhhhC---cHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 411 PNDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
++..+--.+..++.++. +..+.+.+++.+.+. . .|+ ......|.-++.+.|++++++++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 44455445555555543 344555566655541 1 222 23334455566666666666666665543
No 387
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.88 E-value=81 Score=24.92 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhC--CCCchhHHHHHHHHHhCCChHHHHHHHH
Q 042098 500 SQRVMQLLLEIE--SSNSGNYVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 500 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
..++|..+.+.+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566778777653 5667788888899999999999998886
No 388
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.98 E-value=2.4e+02 Score=30.02 Aligned_cols=142 Identities=11% Similarity=0.037 Sum_probs=73.8
Q ss_pred hhcCCCchhHHHHhhcCCC--C---CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 042098 62 IIDLKDFNYASLLFHQISR--P---NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136 (566)
Q Consensus 62 l~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 136 (566)
+++.+.+++|+...+.... | -...+...|..+... |+++.|-...-.|... +..-|..-+..++..+...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~-~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFE-GKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhc-chHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 3467788888888877642 1 234566777777777 8888888777777653 3333443443343333332
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--------------------CChhHHHHHHHHHH
Q 042098 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--------------------RDLVSWNSMISGYS 196 (566)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~li~~~~ 196 (566)
....+ +.......++.+|..++..+.. .+...-.++..+.+. .+...-..|+..|.
T Consensus 441 ~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 441 DIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYL 516 (846)
T ss_pred hhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHH
Confidence 21111 1111112334455555444443 222222222222210 12223344777788
Q ss_pred hcCChhHHHHHHHHhH
Q 042098 197 KMGYAKEAVELFGRMR 212 (566)
Q Consensus 197 ~~~~~~~a~~~~~~m~ 212 (566)
..+++..|+.++-..+
T Consensus 517 ~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQ 532 (846)
T ss_pred HccChHHHHHHHHhcc
Confidence 8888888888776653
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.96 E-value=65 Score=23.44 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 042098 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305 (566)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 305 (566)
..|+.+.|.+++..++ ..+..|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777888887777 6777777777777777765544
No 390
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.62 E-value=21 Score=32.73 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=31.5
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHH
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
.+.|+.++|..+|+.++.+.|.++.+...++......++.-+|.+++-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 455667777777777777777777666666666666666666665553
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.37 E-value=1.4e+02 Score=27.24 Aligned_cols=110 Identities=14% Similarity=0.021 Sum_probs=50.7
Q ss_pred cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHH----HHHHHHCCCCCCcccHHHHHHHHHccCChh-HH
Q 042098 64 DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKL----YYQMKRLGLKPDNFTYPFVFISCANLLALN-HG 138 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a 138 (566)
+.+++++|.+++-+- ...+.+. |+..-|.++ ++...+.++++|......++..+...+.-+ .-
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~-~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKH-GQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHT-T-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Confidence 345666777666442 2334455 555544443 333344566666655555555554433211 22
Q ss_pred HHHHHHHHH---hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCh
Q 042098 139 VSVHSSVFK---IG--LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDL 185 (566)
Q Consensus 139 ~~~~~~~~~---~g--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 185 (566)
.++.+.+++ .| ..-|+..+..+...|.+.|++.+|+.-|-.-..++.
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 233333332 22 223566777777777788877777766544433333
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.73 E-value=1.8e+02 Score=28.18 Aligned_cols=123 Identities=10% Similarity=0.070 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---HhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY---ARAGHLSEAWDFVERMPEKVDEIVLGA 486 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~ 486 (566)
+-...|+..+-..|...|+.+.|.+++++..-.++ .++......+ ...|. +.-=|.. .-+...|.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~---~rL~~~~---~eNR~ffla 105 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGN---CRLDYRR---PENRQFFLA 105 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCc---cccCCcc---ccchHHHHH
Confidence 34556777777778888888888877776653211 0000000000 00000 0000000 023444444
Q ss_pred H---HHHHHhcCCHHHHHHHHHHHHhhCCC-CchhHHHHHHHHH-hCCChHHHHHHHHHHHh
Q 042098 487 L---LGACQKQKNTDVSQRVMQLLLEIESS-NSGNYVISSKIFA-NLKMWDDSAKMRALMRE 543 (566)
Q Consensus 487 l---~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 543 (566)
+ +..+.+.|-+..|.++.+-++.++|. ||-.....++.|+ +.++++--+++.+....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3 57788899999999999999999998 8777777776654 77888888888877654
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.87 E-value=90 Score=28.53 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHH
Q 042098 88 VMIRGLTTAWQKYSHSLKLYYQMKRL--GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147 (566)
Q Consensus 88 ~ll~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (566)
.-|.++++. ++|.+++...-+--+. .++|.. ...-|-.|.+.+.+..+.++-+.-..
T Consensus 88 vGIQALAEm-nrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 88 VGIQALAEM-NRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred hhHHHHHHH-hhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346677777 7777766654443321 122222 22223334555666655555554443
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.57 E-value=59 Score=32.94 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhhh--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhCCC-CC--CHHHH
Q 042098 411 PNDVTFIGVLSACVHA--GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR-AGHLSEAWDFVERMPE-KV--DEIVL 484 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~--~~~~~ 484 (566)
|+..+..+++.-.... ...+.+-.++-.|.. ...|--.+. .+...|.+ .|+...|.+.+..... +| ..+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 6666666655443321 223344445544432 233321122 22334443 6888899888776543 33 33455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..|.+...+.|-.-.|..++.+.+.+....|-++..++++|....+.+.|++.++++.+....
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 667777788888889999999999998878889999999999999999999999988776543
No 395
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.87 E-value=67 Score=26.05 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
+.|.++.+-|- ...............|++..|.++.+.++..+|+|...-...+++|.+.|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45566666653 3344444556677889999999999999999999999888888888776643
No 396
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.91 E-value=2.1 Score=39.50 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=68.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEeCCcccCCC
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWIGIDDPKQSNW 565 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 565 (566)
....|.++.|++.+-.+++++|++...|..-+.++.+.+++..|++-.+...+.+.....|+.|-........+|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 345688999999999999999999999999999999999999999999999999988888988888877777777
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.84 E-value=65 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 042098 105 KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146 (566)
Q Consensus 105 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (566)
+-++.+...++.|++......+++|.+.+|+..|.++|+-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555544
No 398
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.65 E-value=52 Score=20.70 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=29.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 295 AYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 295 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
...+.|-.+++..++++|.+.|+..+...+..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345678888999999999999999988888777653
No 399
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.64 E-value=2e+02 Score=27.97 Aligned_cols=137 Identities=10% Similarity=-0.021 Sum_probs=74.9
Q ss_pred hhHHHHHHHHH--HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHH--------HHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 376 EVSWNAMISAL--AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLS--------ACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 376 ~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~--------~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
+..|-.++-.+ ..++++.+|..+-+.....- ..-+..|+..+.. ++-..|+...-..++....+.-.+
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i--~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASI--SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 44455444332 34567788888777766543 4456666665443 222345555555555444432223
Q ss_pred CCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 446 IPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDE--IVLG-ALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 446 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.-| ....|.|++.|...+.++.|.++..+..-. .+. .-|. -+...-.-.+++..|.+.|-.+.+..|.+
T Consensus 202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 322 345566777777777777777777766531 011 1111 12233445667777777777777777763
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.45 E-value=1.8e+02 Score=26.89 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS----SFGLIPKSEHY 452 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 452 (566)
+++.....|..+|.+.+|.++.++....+ +.+...+-.|+..+...|+--.+..-++++.+ .+|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld---pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD---PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45556677888899999999988888764 45667777888888888886666666655543 24666554443
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.19 E-value=43 Score=21.08 Aligned_cols=31 Identities=3% Similarity=0.049 Sum_probs=16.9
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 131 NLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
+.|-..++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4445555555566665555555555555444
No 402
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.57 E-value=2.3e+02 Score=27.90 Aligned_cols=301 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcC---
Q 042098 123 PFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG--- 199 (566)
Q Consensus 123 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--- 199 (566)
+-.+.-|...|+..+|.+..+.+... +-.+..+-.+++.+....-.-...+.++.+-.+-+..+-+.+.+++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vs-ffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVS-FFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCC-chhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHH
Q 042098 200 -----YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPA 274 (566)
Q Consensus 200 -----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 274 (566)
+...|...|+...-+.+.-+..--+.+-......|+.+....+-+.+ ..+|+-|..+|+..+.
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~------------~~IIqEYFlsgDt~Ev 364 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDL------------TPIIQEYFLSGDTPEV 364 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhh------------HHHHHHHHhcCChHHH
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----ChhHHHHHHHHH
Q 042098 275 RRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG----ALDLGKWVDKYA 347 (566)
Q Consensus 275 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 347 (566)
.+.++++--| ....-..+--++-+..+-.+.-.+|-.-..-.+-++...-+.+.-.+-... +...|.+.+...
T Consensus 365 i~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalF 444 (645)
T KOG0403|consen 365 IRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALF 444 (645)
T ss_pred HHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHH
Q ss_pred HHhCCCCccc-------------------------------------------------------------------cCC
Q 042098 348 SQRGLRHDIF-------------------------------------------------------------------CGS 360 (566)
Q Consensus 348 ~~~~~~~~~~-------------------------------------------------------------------~~~ 360 (566)
....+-.++. .|+
T Consensus 445 lARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~Gd 524 (645)
T KOG0403|consen 445 LARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGD 524 (645)
T ss_pred HHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHccCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc--------H
Q 042098 361 IDDALKVFEDMPVT---NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL--------V 429 (566)
Q Consensus 361 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~--------~ 429 (566)
+.+|...++++.-| ....+.+++.+.-+.|+-...+.++++..+.| ..|-+.+-++|.+..+ +
T Consensus 525 isEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg------lIT~nQMtkGf~RV~dsl~DlsLDv 598 (645)
T KOG0403|consen 525 ISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG------LITTNQMTKGFERVYDSLPDLSLDV 598 (645)
T ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------ceeHHHhhhhhhhhhccCcccccCC
Q ss_pred HHHHHHHHHhHHh
Q 042098 430 DEGRRLFDLMSSS 442 (566)
Q Consensus 430 ~~A~~~~~~~~~~ 442 (566)
..|.+.|+...+.
T Consensus 599 Pna~ekf~~~Ve~ 611 (645)
T KOG0403|consen 599 PNAYEKFERYVEE 611 (645)
T ss_pred CcHHHHHHHHHHH
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.41 E-value=86 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=9.9
Q ss_pred HHhhhCcHHHHHHHHHHhH
Q 042098 422 ACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~ 440 (566)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3555555555555555544
No 404
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.78 E-value=1.7e+02 Score=30.20 Aligned_cols=85 Identities=11% Similarity=0.009 Sum_probs=62.4
Q ss_pred HhcCCHHHHHHHHHhCCC----C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 460 ARAGHLSEAWDFVERMPE----K----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+..++..+.+.|..-.. . .-...+..+--+|....+.+.|.++++++.+.+|.++-.-.....+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 355677777777664321 1 11344566667777888899999999999998888888888888888889999
Q ss_pred HHHHHHHHHHHhC
Q 042098 532 DDSAKMRALMREK 544 (566)
Q Consensus 532 ~~A~~~~~~~~~~ 544 (566)
++|+..+......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9998887776543
No 405
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.38 E-value=59 Score=29.55 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
+=.++...++++.|.+..++.+.++|.++.-...-+-+|.+.|-+.-|++-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3467778888899999999988888988888888888888999888888888776554
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.16 E-value=1.5e+02 Score=25.26 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
+..|.+.|.+++|.+++++... +|++...-..|..+-.....+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 3567777888888888777777 66666555555555444444444444
No 407
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=52.05 E-value=2.7e+02 Score=28.13 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=115.9
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..|.....+++..+.........+.+..++...|- +-..|-.++.+|... ..++-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e----------------------~kmal~el~q~y~en-~n~~l~~ 119 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE----------------------SKMALLELLQCYKEN-GNEQLYS 119 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc----------------------hHHHHHHHHHHHHhc-CchhhHH
Confidence 34556677778888777777777777777776553 456788899999988 5688888
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHH
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK------SEHYSCMVDLYARAGHLSEAWDF 471 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 471 (566)
+++++.+.. .|...+..-+.-+...++.+.+..+|..+... +.|. ...|.-|... -..+.+..+.+
T Consensus 120 lWer~ve~d----fnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l 191 (711)
T COG1747 120 LWERLVEYD----FNDVVIGRELADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRL 191 (711)
T ss_pred HHHHHHHhc----chhHHHHHHHHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHH
Confidence 999888754 44444444444444458888888888888764 3332 1233333321 13466777777
Q ss_pred HHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 472 VERMPEK----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 472 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
..++... .-...+.-+-.-|....++.+|++++..+++.+..|..+...++.-+
T Consensus 192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 6666543 22334444556677888999999999988887766655555544433
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.86 E-value=54 Score=28.29 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=34.9
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
...+.+......+.+.+.....|++.+|..++.++...|+.++|.+..+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555444444444557788888888888888888888877777765
No 409
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.70 E-value=1.8e+02 Score=28.73 Aligned_cols=206 Identities=14% Similarity=0.129 Sum_probs=104.2
Q ss_pred HHHccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhccCCCChh--HHHHHHHHHHhcCChhH
Q 042098 128 SCANLLALNHGVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEIRERDLV--SWNSMISGYSKMGYAKE 203 (566)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~ 203 (566)
..+..|+.+.+.. +.+.|..|+... ..+.+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+.
T Consensus 8 ~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 8 DAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 3345566655444 455677665432 334556667788888777776654333221 11233455667788776
Q ss_pred HHHHHHHhHHCCCCCCHH---HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHH--HHHHHHHHHhcCCHHHHHHHH
Q 042098 204 AVELFGRMREEEFLPDEI---TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM--GSALIDMYGKCGALVPARRVF 278 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 278 (566)
+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+.-++
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 555554 33221110 0112233334455554 4444556676654321 123455666788888877777
Q ss_pred hcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH---HHHHHHHhccCChhHHHHHHHHHHHhCC
Q 042098 279 DAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL---IGVLSACASIGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 279 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 352 (566)
+.-... |..-++.+.. .+..|+.+ +++.+.+.|..|+...- ...+......|+.+ +.+.+.+.|.
T Consensus 156 ~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred hcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 665332 2222333333 34456644 44556677776654321 23333334445554 3444455555
Q ss_pred CC
Q 042098 353 RH 354 (566)
Q Consensus 353 ~~ 354 (566)
.+
T Consensus 227 d~ 228 (413)
T PHA02875 227 DC 228 (413)
T ss_pred Cc
Confidence 54
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.56 E-value=33 Score=31.66 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
.-|+..|....+.||+++|+.+++|..+.| +.--..+|.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG--~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLG--STSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CchHHHHHH
Confidence 347788888899999999999999999888 554444543
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.56 E-value=29 Score=31.96 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHH
Q 042098 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVS 225 (566)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 225 (566)
-||..|+...+.|++++|+.++++.++.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 377889999999999999999999998887765555543
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.43 E-value=1.1e+02 Score=23.39 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
..++|..+.+.+...+-. ...+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345555555555554442 22222344556778889998855544556678888866643 477888888888887766
Q ss_pred CCCCCCHhHH
Q 042098 315 AGVNPDKITL 324 (566)
Q Consensus 315 ~g~~p~~~~~ 324 (566)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3333333
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.26 E-value=1.1e+02 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999877
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.70 E-value=53 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
|-.---.++.++...|++++|.++++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333334455566666666666666655543
No 415
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.49 E-value=2.5e+02 Score=28.76 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=11.4
Q ss_pred HHHHHHhhhCcHHHHHHHHHHh
Q 042098 418 GVLSACVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~ 439 (566)
.+...|...|+.+.|..+.++.
T Consensus 289 qva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred HHHHHHHHhcchhhHHHHHHHH
Confidence 3334455556655555555543
No 416
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.79 E-value=2.8e+02 Score=27.45 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (566)
+..+...-+.++...+..+..-.+..-....|...-..-+.+....|. .+|...+..
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 333444445555554443333333322344555555556666666666 455555444
No 417
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.24 E-value=3e+02 Score=27.67 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH--hhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC--VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
-+.++.-+.+.|-..+|...+..+... .+|+...|..++..- ..+.+...+..+++.+...+| .|+..|-..+
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l---pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~ 537 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL---PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYM 537 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC---CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHH
Confidence 445667777788888888888888775 356666676666532 222337777888888888777 4555565555
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 042098 457 DLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~ 475 (566)
..=...|..+.+-.++.+.
T Consensus 538 ~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 538 KEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HhhccCCCcccccHHHHHH
Confidence 5555666666655555443
No 418
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.66 E-value=2e+02 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLS 329 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 329 (566)
+.|++.+|.+.+-.+...+..|...-...+.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34666777777666666666666554444443
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.61 E-value=2.8e+02 Score=27.11 Aligned_cols=55 Identities=7% Similarity=-0.034 Sum_probs=37.8
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCCCHH--HHHHHHHHHhh--hCcHHHHHHHHHHhHHh
Q 042098 385 ALAFNGRAHEALLLFERMSKEGGAARPNDV--TFIGVLSACVH--AGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 385 ~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~--t~~~ll~~~~~--~g~~~~A~~~~~~~~~~ 442 (566)
.+...+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999999875 334443 44555555544 45678888888877654
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.44 E-value=1e+02 Score=25.08 Aligned_cols=62 Identities=10% Similarity=-0.021 Sum_probs=39.5
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042098 106 LYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCG 168 (566)
Q Consensus 106 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~ 168 (566)
+.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|--.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4455566777766543 3566667777777888888888888776665554333445555544
No 421
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.38 E-value=2.6e+02 Score=26.59 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred CChhHHHHHHHHHHHcC------------ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH
Q 042098 374 TNEVSWNAMISALAFNG------------RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS 441 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~------------~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 441 (566)
.|+.+|-.++..--..- -.+.-+.++++..+.+ +-+......++..+.+..+.+...+-|+.+..
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35666766665432221 1456677888888875 34556677788888888899999999999987
Q ss_pred hcCCCCC-hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC-------CC------C----H---HHHHHHHHHHHhcCCH
Q 042098 442 SFGLIPK-SEHYSCMVDLYAR---AGHLSEAWDFVERMPE-------KV------D----E---IVLGALLGACQKQKNT 497 (566)
Q Consensus 442 ~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-------~~------~----~---~~~~~l~~~~~~~~~~ 497 (566)
. .|+ ...|...++.... .-.+++...+|.+... .. . . ..+..+..-+...|..
T Consensus 94 ~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 94 K---NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred H---CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 6 443 5677776665543 2245566666554432 11 1 1 1222233456678999
Q ss_pred HHHHHHHHHHHhhC
Q 042098 498 DVSQRVMQLLLEIE 511 (566)
Q Consensus 498 ~~A~~~~~~~~~~~ 511 (566)
+.|..+++.+++++
T Consensus 171 E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 171 ERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999985
No 422
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.84 E-value=38 Score=31.21 Aligned_cols=76 Identities=9% Similarity=-0.025 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA-LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
|+..|...+.--.+.|.+.+.-.++.+...+ | ++..|-. --.-+...++++.+..+|.+.++++|++|..|....+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 4444444444444555666666666666543 3 3444422 2234556789999999999999999999988876543
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.26 E-value=96 Score=30.34 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 514 NSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
..+++..++-+|.-.++|.+|.+.|...
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554443
No 424
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.15 E-value=1.3e+02 Score=31.23 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=27.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV 429 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~ 429 (566)
+|..+|...|++-.+..+++.......--+.-...+|..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666543200222234556666666666653
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.51 E-value=4.1e+02 Score=28.36 Aligned_cols=29 Identities=3% Similarity=0.072 Sum_probs=22.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+.+-.-.+|+.+|.+..+.|.++.|+.-.
T Consensus 373 ~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 373 FEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred hhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 45556678999999999999998887543
No 426
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.39 E-value=3.2e+02 Score=27.11 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=32.1
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 379 WNAMISALAF---NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 379 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
+..+++++.+ ..+.+.|+.++..|.+.| ..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G--~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAG--EDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhhc
Confidence 4445555554 478999999999999998 7777655555555554444
No 427
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.33 E-value=2.7e+02 Score=26.25 Aligned_cols=110 Identities=16% Similarity=0.047 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 429 VDEGRRLFDLMSSSFGL---IPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
.+.|.+.|+.......- ..++.....++....+.|..+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888887763111 345566667777778888877767777777666778888888999988899888889999
Q ss_pred HHHhhC-CCCchhHHHHHHHH-HhCCChHHHHHHH
Q 042098 506 LLLEIE-SSNSGNYVISSKIF-ANLKMWDDSAKMR 538 (566)
Q Consensus 506 ~~~~~~-p~~~~~~~~l~~~~-~~~g~~~~A~~~~ 538 (566)
.+...+ -.+......+..+. ...--.+.+.+.+
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHH
Confidence 888843 22333444444333 2222235555543
No 428
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.10 E-value=3.8e+02 Score=27.89 Aligned_cols=178 Identities=9% Similarity=0.028 Sum_probs=97.1
Q ss_pred chhHHHHhhcCCC-CCcchHHHHHH----H-HHcCCCChhHHHHHHHHHHH-------CCCCCCcccHHHHHHHHHccC-
Q 042098 68 FNYASLLFHQISR-PNEYAFNVMIR----G-LTTAWQKYSHSLKLYYQMKR-------LGLKPDNFTYPFVFISCANLL- 133 (566)
Q Consensus 68 ~~~A~~~~~~~~~-~~~~~~~~ll~----~-~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~- 133 (566)
...|...++.... .+...-..+.. + +... .+.+.|+..|+.+.+ .| +.....-+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~-~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVT-QDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777632 33333222222 2 3345 788999999998876 44 3445555666665532
Q ss_pred ----ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhccCCC-ChhHHHHHHHHHH----hcCChhH
Q 042098 134 ----ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR-CGKLDSARKVFDEIRER-DLVSWNSMISGYS----KMGYAKE 203 (566)
Q Consensus 134 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~~~~~~ 203 (566)
+.+.|..++...-+.|. |+....-..+..... ..+...|.++|...-.. ...++-.+..+|. -..+.+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 56678888888877763 344333222222222 24567788888776643 2333222222222 2246677
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCC
Q 042098 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (566)
|..++.+..+.| .|...--...+..+.. +..+.+...+..+.+.|.+
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 778887777776 3332222233333444 6666666666555555543
No 429
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=2.8e+02 Score=26.29 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHhcCCHHHHHHHHHhCCC------CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 458 LYARAGHLSEAWDFVERMPE------KVDEIVLG--ALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~------~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
..-+.++.++|+++++++.. .|+...|- ...+.+...||...+.+.++....
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33344456666666555543 14444332 223445556666666666665554
No 430
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=2.3e+02 Score=25.37 Aligned_cols=114 Identities=12% Similarity=-0.016 Sum_probs=64.8
Q ss_pred CCHHHHHHHHccCC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHH-HHHhhhCcHHHHHH
Q 042098 359 GSIDDALKVFEDMP--VTNE-VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVL-SACVHAGLVDEGRR 434 (566)
Q Consensus 359 ~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll-~~~~~~g~~~~A~~ 434 (566)
..++.|...|.+.. .|++ .-|+.-+-++.+.++++.+..--.+..+ +.||..--..++ ........++.|+.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 55667777666554 4544 4456667777777788877776666665 446655443333 34556677778887
Q ss_pred HHHHhHHh---cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 435 LFDLMSSS---FGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 435 ~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+++.... ..+.+.......|..+--..=...+..++.++..
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 77776332 1333334455555544333333344444555443
No 431
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.15 E-value=1.5e+02 Score=23.13 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCchhHH----HHHHHHHhCCChHHHHHHHHHH
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLE-------IESSNSGNYV----ISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
+..|-.++...|++++++.-.+.++. ++.+....|. .-+.++...|+.++|.+.|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33444555555555555444444442 3333333333 3345677788888888877654
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=44.04 E-value=2.2e+02 Score=26.78 Aligned_cols=123 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDF 471 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 471 (566)
+.+|.++|++..+.| =..|.+......--...+.+.+. +...-..+-..|.-+.-+.|+..+|.+.
T Consensus 232 i~~AE~l~k~ALka~-------------e~~yr~sqq~qh~~~~~da~~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG-------------ETIYRQSQQCQHQSPQHEAQLRR-DTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHhhHHHHhhhccchhhhhhc-ccchhhHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhC
Q 042098 472 VERMPEK----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE-SSNSGNYVISSKIFANL 528 (566)
Q Consensus 472 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 528 (566)
+..+... .-......|+.+|....-+.+...++-+.-++. |.+..+...-+-.-.+.
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHH
No 433
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.57 E-value=2e+02 Score=29.08 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=19.7
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchh
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDH 155 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 155 (566)
+...+..++.++...+....+..+++.+.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 33334444444444334456666666666666555433
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.48 E-value=3.2e+02 Score=26.53 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=36.0
Q ss_pred CcchHHHHHHHhcCCCCchHHHHHHHHHHhCCCCChHHHHHhh--cCCCchhHHHHhhcC
Q 042098 21 SLLREKLLSLLKKCPSTKTVQQIHTQMLINFIQKPNFLLIRII--DLKDFNYASLLFHQI 78 (566)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~~~A~~~~~~~ 78 (566)
+..+.........|-..-+...+...+.+..++.+..+--+.+ ..|+.+.|.++++..
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444443333433333336677777777777776666555555 788888888887764
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.45 E-value=28 Score=27.62 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=25.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 297 AQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
-..|.-.+|..+|++|.+.|-+|| .++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 445777889999999999999988 455665543
No 436
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.04 E-value=86 Score=22.70 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhH
Q 042098 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSH 102 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 102 (566)
..+.+++.+.|+-.....-...-...+.+.|.++++.++.....+|..+..++-.. |...-
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~-~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRET-GQTDL 79 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CchHH
Confidence 45666677666533322222222455667778888877777777888877777766 64433
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.84 E-value=92 Score=20.15 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=20.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
+.-++.+.|++++|.+..+.+.+ +.|+-.-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~----~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE----IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH----HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh----hCCCcHHHHHH
Confidence 44566777777777777777776 44665444333
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.78 E-value=2.5e+02 Score=25.07 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=63.4
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 378 SWNAMISALAF--NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
.|...++++.. .+++++|.+.+-+- . +.|+-. .-++.++...|+.+.|..+++..... ..+......+
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s--~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~ 147 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---S--LIPWFP--DKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLY 147 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---C--CCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHH
Confidence 36667777554 45677777666322 1 333322 23666777788888888888654311 1122233333
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042098 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQK 495 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 495 (566)
+.. ..++.+.+|..+.+...++.....+..++..+....
T Consensus 148 ~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 148 FVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 344 566888888888888776444567777776666443
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.54 E-value=44 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
.-.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44678999999999999999998865
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.43 E-value=82 Score=28.55 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 042098 454 CMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4555566666666666666655
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.30 E-value=5.6e+02 Score=29.05 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=96.2
Q ss_pred HHHcCChHHHHHHHHHHHh-----------------------CCCCCCCC-----HHHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 386 LAFNGRAHEALLLFERMSK-----------------------EGGAARPN-----DVTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~-----------------------~g~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
|...|...+|+..|.+... .| -.|. ..-|..+++.+-..+-.+.+.++-.
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG--~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADG--KTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcC--CCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5667778888887776532 12 1122 2236677888888888999888887
Q ss_pred HhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHH------------HH
Q 042098 438 LMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTD------------VS 500 (566)
Q Consensus 438 ~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~------------~A 500 (566)
...+. +.++ ..+++.+.+-....|.+.+|.+.+-.-... -.......++-.++..|.++ +.
T Consensus 1008 ~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1008 KAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Confidence 77764 3333 346778888888999999988876654431 22344556666666766543 33
Q ss_pred HH-HHHHHHhhCC-CCchhHHHHHHHHHhCCChHHHHHHH
Q 042098 501 QR-VMQLLLEIES-SNSGNYVISSKIFANLKMWDDSAKMR 538 (566)
Q Consensus 501 ~~-~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (566)
+. +++..-+..| ..+..|..|.-.+...++|.+|-.++
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 33 3333333333 34557778878888999999988763
No 442
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.03 E-value=2.3e+02 Score=24.57 Aligned_cols=131 Identities=8% Similarity=0.081 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVT-FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
....+.++..+...|+++.|-+.|.-+.... +.|..+ |..=+..+.+.+......+.+ +.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~---~VDiR~~W~iG~eIL~~~~~~~~~~~fl----------------~~ 101 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP---EVDIRSLWGIGAEILMRRGEQNSELEFL----------------EW 101 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC---CCChHhcchHHHHHHHcCCCcchHHHHH----------------HH
Confidence 4567788888889999999999999888753 345433 333233333333333222333 34
Q ss_pred HHHHHHhcCCHHHHHH------HHHhCCCC--CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC---CchhH
Q 042098 455 MVDLYARAGHLSEAWD------FVERMPEK--VD---EIVLGALLGACQKQKNTDVSQRVMQLLLEI--ESS---NSGNY 518 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~------~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~---~~~~~ 518 (566)
++..|.......+... +|+.-... |. ...|..++..-.+....+++.++.+++-++ .|+ ++..|
T Consensus 102 l~~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~ 181 (199)
T PF04090_consen 102 LISFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELW 181 (199)
T ss_pred HHHHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHH
Confidence 4444443322222211 11111111 21 112334444443444556677777777775 343 56666
Q ss_pred HHHHHHH
Q 042098 519 VISSKIF 525 (566)
Q Consensus 519 ~~l~~~~ 525 (566)
...+-++
T Consensus 182 ~i~~m~~ 188 (199)
T PF04090_consen 182 FIRGMCH 188 (199)
T ss_pred HHHHHHH
Confidence 6655444
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.99 E-value=1e+02 Score=21.06 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
|....++.++...+...-.++++..+.+....| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g---~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG---SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 344556777777777666777777777777766 2455555555555544
No 444
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=41.28 E-value=69 Score=19.01 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+|..|+.+-...++|++|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678889999999999999888877654
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.23 E-value=1.8e+02 Score=23.02 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 042098 431 EGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVER 474 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (566)
.+.++|+.|..+ |+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888888888887 77666 55777888888888888888888864
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.22 E-value=1.2e+02 Score=27.46 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCC----CCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGL----IPKSEHYSCMVDLYARAGHLSEAWDFVER 474 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (566)
.+..-|...|++++|.++|+.+...+.- .+...+...+..++.+.|+.++.+.+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455677888888888888877544221 12234455566666677776666655433
No 447
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.93 E-value=2.9e+02 Score=25.44 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccC
Q 042098 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDM 371 (566)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 371 (566)
+.+...+.+++++|+..+.++...|+..+..+.+--
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEq-------------------------------------------- 44 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQ-------------------------------------------- 44 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHH--------------------------------------------
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCCCHHHHHHHHHHHhhhCc-----HHHHHHHHHHhHHh
Q 042098 372 PVTNEVSWNAMISALAFNGRAHEALLLFER----MSKEGGAARPNDVTFIGVLSACVHAGL-----VDEGRRLFDLMSSS 442 (566)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~~~p~~~t~~~ll~~~~~~g~-----~~~A~~~~~~~~~~ 442 (566)
..+...+...|.+.|++..--+.... |..-. -+-.......|+.-+....+ ..-+....+...+.
T Consensus 45 ----E~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE 118 (421)
T COG5159 45 ----EATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE 118 (421)
T ss_pred ----HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHH-------HHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhC---
Q 042098 443 FGLIPKSEHYSCMVDLYARAGHLSEAWDF-------VERMPEKVDEIVLGALL-GACQKQKNTDVSQRVMQLLLEIE--- 511 (566)
Q Consensus 443 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~--- 511 (566)
...-.....-.-++..+.+.|.+.+|+.+ ++++..+|+..+...+- .+|.+..++..+..-+-.+....
T Consensus 119 kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~ 198 (421)
T COG5159 119 KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSA 198 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q ss_pred --CCCchhHHHHHHH--HHhCCChHHHHHHHHHHHh
Q 042098 512 --SSNSGNYVISSKI--FANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 512 --p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 543 (566)
|+....-..|... .+...+|..|-.+|=+..+
T Consensus 199 YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 199 YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
No 448
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.81 E-value=5.6e+02 Score=28.67 Aligned_cols=239 Identities=9% Similarity=-0.060 Sum_probs=102.4
Q ss_pred HHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCC
Q 042098 73 LLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDE 152 (566)
Q Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 152 (566)
.+...+..+|+.+-...+..+.+. +.. .+...+....+. +|...=...+.++.+.+........+..+.. .+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~-~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTET-TPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhh-cch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 444444556666666666666555 432 233333344322 2333333333444333221111122222222 24
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcC
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD 232 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 232 (566)
|..+-...+..+...+.- ....+...+..+|...-...+.++.+.+..+. + .... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHHHHHHHH
Confidence 444444445544433211 11233444555565555555556555443322 1 1111 22344444444445444
Q ss_pred CCCchh-HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHH-HHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 042098 233 LGDLVL-GKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPAR-RVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFN 310 (566)
Q Consensus 233 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 310 (566)
.+..+. +...+..+.+ +++..+-...+.++...|....+. .+...+..++...-...+.++...+. .++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 443322 1222222221 234555566666666666654432 23333344555455555556655554 33444444
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcc
Q 042098 311 RMKYAGVNPDKITLIGVLSACASI 334 (566)
Q Consensus 311 ~m~~~g~~p~~~~~~~ll~~~~~~ 334 (566)
.+.+ .|+...=...+.++.+.
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhcc
Confidence 4443 34444444445555554
No 449
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=40.80 E-value=1.5e+02 Score=28.36 Aligned_cols=100 Identities=17% Similarity=0.047 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh--CCChHHHHHHHHH
Q 042098 463 GHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN--LKMWDDSAKMRAL 540 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 540 (566)
+.++.+.++++++. ....|.+.|-.++.+.++..+|..-+-++...+|...+........... .++.+.....+++
T Consensus 143 ~~~~~~~e~lEe~~--g~~iT~e~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~~~~~d~d~~~~~l~~ 220 (379)
T COG1775 143 NELDKFKELLEELT--GNEITEEKLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFAVFLRDKDAFIEELEE 220 (379)
T ss_pred HHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHHHHhcchHHHHHHHHH
Confidence 45566677777665 3456777777888777777777766666666666655544444333332 4556666666665
Q ss_pred HH---hCCCccCCceeEEEeCCc--ccCCC
Q 042098 541 MR---EKGVSKTPGCSWIGIDDP--KQSNW 565 (566)
Q Consensus 541 ~~---~~g~~~~~~~~~~~~~~~--~~~~~ 565 (566)
|. ++.+....| .|+++-|. +-.||
T Consensus 221 l~eelekr~~eg~~-~Ri~~~g~p~~~~~~ 249 (379)
T COG1775 221 LIEELEKRVEEGEG-PRILITGIPILGDNP 249 (379)
T ss_pred HHHHHHHHHhccCC-ceEEeecCcccCCCc
Confidence 54 222322222 56777666 44444
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=39.70 E-value=1.8e+02 Score=25.90 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=55.2
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHH--HHHHHHHHHhhhCcHHHHHHHHHHh---HHhcCCCCChhHHHHHHHHHHh
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDV--TFIGVLSACVHAGLVDEGRRLFDLM---SSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~--t~~~ll~~~~~~g~~~~A~~~~~~~---~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
...|+++.|+++.+.+++.|. ..|+.. ++-+++ |.++++.. ... |-..++.....+...-..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f~R~~~t~v-----------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~ 160 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL-TMPDQFRRTLANFV-----------AEEVANAALKAASA-GESVEPYFLRVFLDLTTE 160 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC-CCCccccCCchHHH-----------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhc
Confidence 467899999999999998883 233321 111111 22222222 122 333333332222111111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCCC
Q 042098 462 AGHLSEAWDFVERMPEKVDEIVLGALLGACQ---------KQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
..|.++.....|......+. ..++...|..+++++.+++|.-
T Consensus 161 -----------~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 161 -----------WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred -----------CCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 12332334455666666662 4567889999999999998773
No 451
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.69 E-value=46 Score=29.32 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=31.4
Q ss_pred HhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 460 ARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+.++.+.|.+++.+...- .....|--+.....+.|+++.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555665555432 234455555555566666666666666666665554
No 452
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=39.62 E-value=3.7e+02 Score=26.14 Aligned_cols=96 Identities=10% Similarity=0.123 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhhC---CCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGAL------------LGACQKQKNTDVSQRVMQLLLEIE---SSN 514 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~---p~~ 514 (566)
..-..|...+-..|+.++|..++.+..- .||.++ ++.|...+|+-+|.-+-+++.... |+-
T Consensus 132 rlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 132 RLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 3445677888899999999999988763 333332 477888899999998888886542 221
Q ss_pred ----chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 515 ----SGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 515 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
...|..+.....+.+.|=.+-+.++..-..|....
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 34577777888888899889898888876665544
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.50 E-value=71 Score=34.17 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 468 (566)
.+++++++.+.+.-.--| .++|..+.+.|-.+-|+.+.+.-...+++. ..+|+++.|
T Consensus 606 ~k~ydeVl~lI~ns~LvG----------qaiIaYLqKkgypeiAL~FVkD~~tRF~La-------------Le~gnle~a 662 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG----------QAIIAYLQKKGYPEIALHFVKDERTRFELA-------------LECGNLEVA 662 (1202)
T ss_pred hhhhHHHHHHHHhcCccc----------HHHHHHHHhcCCcceeeeeecCcchheeee-------------hhcCCHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 469 WDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
++.-.++. +..+|..|.......|+.+-|+..|++... +..|.-.|.-.|+.++-.++.+.+..+.
T Consensus 663 le~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~iae~r~ 728 (1202)
T KOG0292|consen 663 LEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIAEIRN 728 (1202)
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHHHhhh
No 454
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.17 E-value=80 Score=18.41 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=7.4
Q ss_pred HHHHHHhCCChHHHHHH
Q 042098 521 SSKIFANLKMWDDSAKM 537 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~ 537 (566)
++-.+...|++++|.++
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444444444444444
No 455
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.97 E-value=4.8e+02 Score=27.29 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCC
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGL 150 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 150 (566)
.+....|+.|+..+... +.+.-.++++++.. . + ...+..++++....|.......+.+.+....+
T Consensus 307 ~~~~~~f~~lv~~lR~~--~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 307 EPAAAKFLRLVRLLRTL--SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred cchHHHHHHHHHHHHhC--CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34555677777666543 57777777777654 1 1 45667777777777777666666665555443
No 456
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.85 E-value=1.7e+02 Score=23.92 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
.-..++..+...++.-.|.++++++.+.+ ...+..|.-.-++.+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~--p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEG--PGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCHhHHHHHHHHHHHCC
Confidence 34556666777766677777777777776 4444455444445444443
No 457
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.32 E-value=2.9e+02 Score=24.69 Aligned_cols=103 Identities=13% Similarity=0.254 Sum_probs=62.6
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---------------CCCCHHHHHHH
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMP---------------EKVDEIVLGAL 487 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~~l 487 (566)
|.+..+..--.++.+-.... +++.+.....+++ +...|+..+|+..++.-. ..|.+.....+
T Consensus 169 ysklsd~qiL~Rl~~v~k~E-kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAE-KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hcccCHHHHHHHHHHHHHHh-CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 33444433334444433333 5555554444443 345677777777666432 24888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..|.+ +++++|.+++.++++++-....+...+.++.....
T Consensus 246 l~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 246 LQACLK-RNIDEALKILAELWKLGYSPEDIITTLFRVVKNMD 286 (333)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 887766 68999999999999987555555555555544443
No 458
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=37.33 E-value=2e+02 Score=28.97 Aligned_cols=53 Identities=9% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQL 506 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (566)
.|..++.-|...++|++|.++..-.. ....|.++........+..-++..|..
T Consensus 575 py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA 627 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAA 627 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444555555555555555555443 233444444444444444433333333
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.50 E-value=2.3e+02 Score=29.47 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=29.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHH
Q 042098 124 FVFISCANLLALNHGVSVHSSVFKIG--LDEDDHVSHSLITMYARCGKLD 171 (566)
Q Consensus 124 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~~~~~ 171 (566)
+|+.+|...|++-.+.++++...... -+.=...+|..|+-+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 67777777777777777777776532 1222335566666666666543
No 460
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.14 E-value=3.7e+02 Score=25.26 Aligned_cols=80 Identities=5% Similarity=-0.012 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 135 LNHGVSVHSSVFKIGL----DEDDHVSHSLITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 135 ~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
...|.+.|+.....+. ..++.....++...++.|+.+.-..+++.... ++......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3455666666655311 23444555555555666665554455544443 344555666666666666666666666
Q ss_pred HhHHC
Q 042098 210 RMREE 214 (566)
Q Consensus 210 ~m~~~ 214 (566)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 65553
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.91 E-value=3.7e+02 Score=25.16 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 241 WVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
++++.+...++.|.-..+.-+.-.+.+.=.+.....+++.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.83 E-value=1.7e+02 Score=21.25 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 042098 105 KLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVF 146 (566)
Q Consensus 105 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 146 (566)
++|+-....|+..|...|..++..+.-.=.++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555565555555555444444444444444443
No 463
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.83 E-value=1.4e+02 Score=22.02 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTA 96 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 96 (566)
..|.+.+.+.|+-.+...-...-...+.+.+.++++.++...+.+|..+..++-..
T Consensus 23 ~~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 23 DELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRET 78 (90)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhc
Confidence 45666666666543333222222445667777777777777777777777777554
No 464
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.71 E-value=36 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=24.6
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSAC 423 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~ 423 (566)
...|.-..|..+|++|.+.| -+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G--~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERG--NPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCC--CCCc--cHHHHHHHh
Confidence 34566678899999999999 7888 566666543
No 465
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.55 E-value=2.2e+02 Score=24.74 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-HHHHHHhCCChHHHHHHHHHH
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI-SSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 541 (566)
....++..|...||++.|-++|.-+++..+-|....-. =+.++.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34556666666777777777777776665444433222 234555555544444555544
No 466
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.26 E-value=1.8e+02 Score=21.33 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhCCC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKIFANLKM 530 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 530 (566)
..--.+...+...|+++.|.+.+-.+++.+|. +...-..++.++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 33444445555555555555555555555432 24444455555555554
No 467
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.96 E-value=4.4e+02 Score=26.94 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--CChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN--KDVV---TWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
..++.-|.+.+++++|..++..|.= -... +.+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 4577889999999999999999832 1222 3444455555555455555556655543
No 468
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.59 E-value=1.8e+02 Score=21.10 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhH
Q 042098 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (566)
..++..+.+.|+-. .. ..-..-+...+.+.|.++++.++.++..+|..+..++-..|...-
T Consensus 19 ~~v~~~L~~~~Vlt-~~---~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGVFT-PD---MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhcCCCC-HH---HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34566666665321 11 111222345667788888888888888888888888777665443
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.20 E-value=1.9e+02 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.111 Sum_probs=18.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
.++..+...++.-.|.++++.+.+.+..++..|.-..|..
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~ 69 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDF 69 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHH
Confidence 3333333344444555555555555544444443333333
No 470
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.17 E-value=1.5e+02 Score=20.64 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC--------------CChHHHHHHHHHHH
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANL--------------KMWDDSAKMRALMR 542 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~ 542 (566)
+.+.|..++..+..-+..+|..|+.+...+.+. |....|.+-|+++.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~ 72 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMV 72 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444455555554444433 44555666666554
No 471
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=34.01 E-value=90 Score=21.12 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=21.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGVSKTPG 551 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 551 (566)
++.--.+.| |..|.+++++|.+.|+..++.
T Consensus 24 ~lQR~~~IG-ynrAariid~lE~~GiV~p~~ 53 (63)
T smart00843 24 LLQRRLRIG-YNRAARLIDQLEEEGIVGPAN 53 (63)
T ss_pred HHHHHHhcc-hhHHHHHHHHHHHCcCCCCCC
Confidence 333344444 778999999999999887764
No 472
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.38 E-value=4.9e+02 Score=25.80 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=119.6
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
|.++... | ..++..+-...... ++...+.....++....+......+.+.+ -.++..+....+..+...++
T Consensus 45 LdgL~~~-G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 45 VDGLVLA-G--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHh-h--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCc
Confidence 5666665 5 45666555555332 23334443333333222222122232222 24455566777777777777
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 042098 170 LDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (566)
......+..-+..++.......+.++...+. .+...+....+ .++...-...+.++...+..+....+ ..+
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L-~~a--- 186 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTL-RLY--- 186 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHH-HHH---
Confidence 6666666666666666655555555554432 23333333332 44555555666666665554333322 222
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDA-MVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
-...+..+-..-+.+....|. ..|...+.. ...++....-.+...+...|. .++...+..+.+. +. +-...+
T Consensus 187 l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d---~~--vr~~a~ 259 (410)
T TIGR02270 187 LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA---AA--TRREAL 259 (410)
T ss_pred HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC---hh--hHHHHH
Confidence 123345555666667777777 555555554 344454444444444433333 3666666666553 22 455666
Q ss_pred HHHhccCChhHHHHHHHHH
Q 042098 329 SACASIGALDLGKWVDKYA 347 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~ 347 (566)
.++...|+......+...+
T Consensus 260 ~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHcCCcchHHHHHHHh
Confidence 6777777766555554444
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.29 E-value=1.7e+02 Score=24.56 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
.++..+...++.-.|.++++.+.+.+ ..++..|.-.-|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~--~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAE--PQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhC--CCCCcchHHHHHHHHHHCC
Confidence 34444444444455555555555555 3444444444444444443
No 474
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.27 E-value=3e+02 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHhCCCccCCceeEE
Q 042098 529 KMWDDSAKMRALMREKGVSKTPGCSWI 555 (566)
Q Consensus 529 g~~~~A~~~~~~~~~~g~~~~~~~~~~ 555 (566)
...++..+++..+.+.+...+|.+-|+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 445555555555566666666655443
No 475
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.21 E-value=5.2e+02 Score=26.05 Aligned_cols=106 Identities=8% Similarity=-0.050 Sum_probs=65.6
Q ss_pred HhhhCcHHHHHHHHHHhHH--hcCCCCChh-----HHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC------
Q 042098 423 CVHAGLVDEGRRLFDLMSS--SFGLIPKSE-----HYSCMVDLYARAGHLSEAWDFVERMPE----------KV------ 479 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~--~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~------ 479 (566)
+...|++.+|.+++...-- ..|...++. .+|.|.-...+.|.+.-+..+|.+... +|
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4457888888888754321 112222221 124444444555555555555544331 11
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 480 -----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 480 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
-..+||. .-.+...|+.-.|.+.|.++......+|..|..|+.+|...-
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 1223332 345778899999999999999999999999999999987543
No 476
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.90 E-value=2.4e+02 Score=23.03 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=36.3
Q ss_pred HHHHCCCCCCcccHHHHHHHHHcc-CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 109 QMKRLGLKPDNFTYPFVFISCANL-LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 109 ~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|--.-+..+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34556776555443 344444443 4567888888888887766666554445556666553
No 477
>PRK10941 hypothetical protein; Provisional
Probab=32.85 E-value=4e+02 Score=24.57 Aligned_cols=74 Identities=12% Similarity=-0.013 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
.+.+-.+|.+.++++.|+++.+.+.... |+ +.-+.--.-.|.+.|.+..|..=++...+...-.|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~----P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD----PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455566677777777777777776643 43 22233333346666677777766666665423333343333333
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.71 E-value=87 Score=29.05 Aligned_cols=70 Identities=10% Similarity=-0.016 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH-HHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI-SSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
.|+..|...+.-..+.|-+.+...++.+.+...|.|...|.. -..-+...++++.++.++.+-.+.+.+.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 567778777777777788999999999999999999988876 4556788899999999998666555443
No 479
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.28 E-value=7.6e+02 Score=27.67 Aligned_cols=126 Identities=13% Similarity=-0.012 Sum_probs=71.3
Q ss_pred CChhHHHHHHHHHHHcCChHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHE-ALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
++...-...+.++...+..+. +...+..+.. .+|...-...+.++...|....+...+..+.+ .++..+-
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR 824 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG-----DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVR 824 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHH
Confidence 344455555556666554332 3444445442 35666666677777777765544333433332 2344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
...+.++.+.+. +++...+..+...|+...-...+.++.+.+....+...+..+++
T Consensus 825 ~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 825 QGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 556666666665 45666666666666776666667777665334456666666655
No 480
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=32.26 E-value=4.5e+02 Score=25.01 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh------hCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcC
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH------AGLVDEGRRLFDLMSSSFGLIPKSE-HYSCMVDLYARAG 463 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~------~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 463 (566)
-++++..++++....+ .|.+......|.++-. .-++.....+|+.+.. +.|++. +.|. .-+.....
T Consensus 271 lI~eg~all~rA~~~~---~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNR-AVAla~~~ 343 (415)
T COG4941 271 LIDEGLALLDRALASR---RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNR-AVALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehH-HHHHHHhh
Confidence 3678889999988886 4888888888877643 2357777778877764 356643 3333 33445555
Q ss_pred CHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 464 HLSEAWDFVERMPEKVDEIV----LGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
-.+.++.+.+-+..+|...- +..=...+.+.|..++|...|++++.+.++..
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 67788888888877643222 23334678889999999999999999876643
No 481
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.05 E-value=4e+02 Score=24.37 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=35.5
Q ss_pred cCCHH-HHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcee
Q 042098 494 QKNTD-VSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCS 553 (566)
Q Consensus 494 ~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 553 (566)
.|+.. +-+++.+.|+..+..|..+|..--+++..-+.|+.-+.+-.++.+.++..+..+.
T Consensus 125 l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 125 LGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred hcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 34444 4455556666655666666666666666666666666666666666666555443
No 482
>PRK09857 putative transposase; Provisional
Probab=31.72 E-value=1.9e+02 Score=27.00 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
..++.-....++.++-.++++.+.+..|........++.-+.+.|.-+++.++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444566766677777777666666666667788888888888888888888988887643
No 483
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.46 E-value=5.1e+02 Score=25.39 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=48.4
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHH-------HHHH
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHY-------SCMV 456 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-------~~l~ 456 (566)
..|+......++......-. ..-|. ...|.|++.|...+.++.|..+..... -|+...- ..+.
T Consensus 181 ~~~~l~~~rs~l~~~lrtAt-Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~G 254 (493)
T KOG2581|consen 181 LEGRLADIRSFLHALLRTAT-LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLG 254 (493)
T ss_pred hhcchHHHHHHHHHHHHHhh-hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHh
Confidence 34565555556555543211 33443 335667777888888888888765443 3332221 1233
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CC
Q 042098 457 DLYARAGHLSEAWDFVERMPEK-VD 480 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~-~~ 480 (566)
...+-.+++..|.+.|-....+ |.
T Consensus 255 rIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 255 RIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4445567788888776655433 54
No 484
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=30.59 E-value=7.3e+02 Score=26.92 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=55.5
Q ss_pred CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC--ccccCCHHHHHHHHccC-------CCCChhHHHHHHHHHH
Q 042098 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRH--DIFCGSIDDALKVFEDM-------PVTNEVSWNAMISALA 387 (566)
Q Consensus 317 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~ 387 (566)
+..+......+...+ .|+...+..+++.+....... ....=..+.+.+.+... .........+++.. +
T Consensus 193 v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks-i 269 (725)
T PRK13341 193 VDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS-L 269 (725)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-H
Confidence 444555555554433 567777766666654321100 00001123333333221 12233334444443 3
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
+.++++.|+.++.+|.+.| ..|....-..++.+....|
T Consensus 270 rgsD~daAl~~la~ml~~G--edp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAG--EDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhccC
Confidence 5678999999999999999 7776665555555554444
No 485
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.36 E-value=6.5e+02 Score=26.29 Aligned_cols=62 Identities=6% Similarity=0.103 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERD-LVSWNSMISGYSKMGYAKEAVELFGRMREEEF 216 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 216 (566)
....+..|++.+ |.=+.+.-..+++++.. . ...+..++++....|-.....-+.+.+....+
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 344555555543 33445555555555544 3 45666777777777765555555554444333
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.33 E-value=4e+02 Score=23.88 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=79.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHH
Q 042098 261 LIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLG 340 (566)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 340 (566)
.+..|...-++.-|-...+++.+|=.. - +.+--|.+..+.+---++.+-....+++-+......++ +...|+...|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS-R-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS-R-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh-h-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 455666666666666666666554211 1 11223444444333344444445556655555555544 4456777776
Q ss_pred HHHHHHHHH-hCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 341 KWVDKYASQ-RGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
...+..-.. .|.. .+..+|+-...|.+.....++..+. .+++++|.+.+.++.+.| ..|..
T Consensus 212 lNnLQst~~g~g~V---------n~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg--ysp~D 273 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLV---------NQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLG--YSPED 273 (333)
T ss_pred HHHHHHHhcccccc---------chhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC--CCHHH
Confidence 655544333 2222 3345566666788777777776654 457899999999999988 76654
No 487
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.80 E-value=1.5e+02 Score=29.09 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN-----------KDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
..|++.++-.||+..|+++++.+.- -.+.++-.+.-+|.-.+++.+|++.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888999999888887721 245567777788888999999999998764
No 488
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=5.4e+02 Score=25.06 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCCCHHH-H-HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-----
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKE--GGAARPNDVT-F-IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----- 449 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~~~p~~~t-~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----- 449 (566)
-..|...+-..|+.++|..++.+..-. |+ +.-.... | .-=++.|...+|+-.|.-+-+.+..++--.|+.
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~VETygs-m~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl 212 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQVETYGS-MEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL 212 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhhhh-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH
Confidence 344566677789999988888765321 10 0001100 0 111456777888988888888877765445553
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
.-|+.++......+.+-.+-+.|+.+-..
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 35777888877888888888888776553
No 489
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.28 E-value=78 Score=31.26 Aligned_cols=92 Identities=11% Similarity=-0.023 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-VDEIVLGAL-LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
-.+-+...+.++.|..++.+..+. |+-..|-+. ..++.+.+++..|+.=+.++++.+|.....|..-+.++.+.+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 345567788999999999998764 655554333 378899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 042098 533 DSAKMRALMREKGV 546 (566)
Q Consensus 533 ~A~~~~~~~~~~g~ 546 (566)
+|...|+.......
T Consensus 90 ~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 90 KALLDLEKVKKLAP 103 (476)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999987766433
No 490
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.16 E-value=6.2e+02 Score=25.65 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=69.2
Q ss_pred CCChhH-HHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 446 IPKSEH-YSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQ--KQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 446 ~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.|+..+ -+.+++-+.+.|-..+|..++..+..- |+...|..+++.-. ..-+...+.++++.+....-.++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 455443 356777888889999999999887653 56666766663211 1223777888888888765577888888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 042098 521 SSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
....-...|+-+.+-.++.++.+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHH
Confidence 77777788888888877666554
No 491
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.03 E-value=1.9e+02 Score=28.72 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=55.2
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 464 HLSEAWDFVERMPEKVDEIVLGALLGACQ-----------KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
++++|.++.+.+....+ +...+.... -.+.+++-.++++.+.+.+..+ ....-++.|.+.++|+
T Consensus 29 d~~eav~y~k~~p~~k~---f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~ad--~lp~TIDSyTR~n~y~ 103 (480)
T TIGR01503 29 DLQDAVDYHKSIPAHKN---FAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGAD--FLPSTIDAYTRQNRYD 103 (480)
T ss_pred CHHHHHHHHHhCCcccc---HHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCCC--ccceeeecccccccHH
Confidence 56777777776654222 222221111 1235666667777766654333 4445568889999999
Q ss_pred HHHHHHHHHHhCCCccCCceeEEEe
Q 042098 533 DSAKMRALMREKGVSKTPGCSWIGI 557 (566)
Q Consensus 533 ~A~~~~~~~~~~g~~~~~~~~~~~~ 557 (566)
+|.+.+++-.+.|.+.-.|+..+-+
T Consensus 104 ~A~~~l~~s~~~~~s~LNGfP~Vnh 128 (480)
T TIGR01503 104 EAAVGIKESIKAGRSLLNGFPGVNH 128 (480)
T ss_pred HHHHHHHhhhhcCcccccCCCcccc
Confidence 9999998888877777777665433
No 492
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.93 E-value=4.2e+02 Score=23.58 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC---CHHHH--HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChh
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP---NDVTF--IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSE 450 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p---~~~t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 450 (566)
..-+|.|+--|.-...+.+|-+.|.+= .| +.| +..++ ..-|+.....|+++.|++..+.+... -+.-|..
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~ 100 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKE--SG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRE 100 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccc--cC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchh
Confidence 334667766666666666666666543 33 433 33333 45567778899999999999887654 3444443
Q ss_pred HHHHHH----HHHHhcCCHHHHHHHHHhCC
Q 042098 451 HYSCMV----DLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 451 ~~~~l~----~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+-.|. --+.|.|..++|+++.+.-.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 333332 23468888999999887644
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.62 E-value=5.6e+02 Score=25.00 Aligned_cols=22 Identities=9% Similarity=-0.263 Sum_probs=12.8
Q ss_pred HHHHcCChHHHHHHHHHHHhCC
Q 042098 385 ALAFNGRAHEALLLFERMSKEG 406 (566)
Q Consensus 385 ~~~~~~~~~~A~~~~~~m~~~g 406 (566)
.+.+.+++..|.++|+++....
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~ 160 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRL 160 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcc
Confidence 3445566666666666666554
No 494
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=28.49 E-value=5.8e+02 Score=26.18 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=18.3
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchh
Q 042098 131 NLLALNHGVSVHSSVFKIGLDEDDH 155 (566)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~g~~~~~~ 155 (566)
..+|...+...++++.+.|..|...
T Consensus 257 ~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 257 LKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HccCHHHHHHHHHHHHHhCcCHHHH
Confidence 3477888888888888888766544
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.22 E-value=1.6e+02 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCC
Q 042098 191 MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235 (566)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 235 (566)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555556666777788877777666666665555555554443
No 496
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=6.9e+02 Score=25.85 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHH-------HhCCCCCCC-------------CHHHHHHH---HHHHhhhCcHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERM-------SKEGGAARP-------------NDVTFIGV---LSACVHAGLVDEGR 433 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m-------~~~g~~~~p-------------~~~t~~~l---l~~~~~~g~~~~A~ 433 (566)
.+.-.+...+...|+.+-|-.++++. ..-. +.| |...|.+| +..+.+.|-+..|.
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~--F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPN--FIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccc--cccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 34444455666777766665555442 2221 222 22233333 33456678888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYA-RAGHLSEAWDFVERMPE------KVDEIVLGALLGACQKQKN---TDVSQRV 503 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~---~~~A~~~ 503 (566)
++-+.+.+. ...-|+.....+|+.|+ ++.+++--+++++.... -|+...-.++...|..... -+.|..+
T Consensus 363 E~cKlllsL-dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~ 441 (665)
T KOG2422|consen 363 EWCKLLLSL-DPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNA 441 (665)
T ss_pred HHHHHHhhc-CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHH
Confidence 887776643 32334566666777764 67777777777776633 1665555566666665544 4566666
Q ss_pred HHHHHhhCC
Q 042098 504 MQLLLEIES 512 (566)
Q Consensus 504 ~~~~~~~~p 512 (566)
+.++....|
T Consensus 442 l~qAl~~~P 450 (665)
T KOG2422|consen 442 LLQALKHHP 450 (665)
T ss_pred HHHHHHhCc
Confidence 666665433
No 497
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=27.85 E-value=8.8e+02 Score=27.00 Aligned_cols=150 Identities=17% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
-|..+..++..++.+......++..+.+ +..--...+.++...+. .+...+++...+++.-.| -+.......
T Consensus 675 ~n~~l~~l~~~~~~~~~~~~~~~~~~a~-----~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~--lv~~kwf~~ 746 (863)
T TIGR02414 675 RNACLSYLSAADDAEIRNLALEQFKSAD-----NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDP--LVMDKWFAL 746 (863)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCc--hhHHHHHHH
Confidence 4555555555555544334444444332 22222333444443333 233344555444433333 333333333
Q ss_pred HHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 459 YARAGHLSEAWDFVERMPEK-----VDEIVLGALLGACQKQKN-------TDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
-+.. ....+++..+++... .++--..+|+.+++..+. -..=.-+.+.++++++-||.+-..|+..+.
T Consensus 747 qa~~-~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~ 825 (863)
T TIGR02414 747 QATS-PRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLT 825 (863)
T ss_pred HhCC-CcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhh
Confidence 3322 233455555554443 244456778888764332 222344556677889999999999999999
Q ss_pred hCCChHHHHHH
Q 042098 527 NLKMWDDSAKM 537 (566)
Q Consensus 527 ~~g~~~~A~~~ 537 (566)
+-.+++..++.
T Consensus 826 ~w~~~~~~r~~ 836 (863)
T TIGR02414 826 RWRKLDPKRQE 836 (863)
T ss_pred hhhcCCHHHHH
Confidence 99999988874
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.69 E-value=1.7e+02 Score=19.99 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 042098 409 ARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (566)
+.|....++.++..+++..-.++++..+.+.... |. .+..+|---++.+++..-+.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~-g~-I~~d~~lK~vR~LaReQF~~ 59 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQR-GS-IDLDTFLKQVRSLAREQFLK 59 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-S-HHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-CCHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999988899999999999887 54 45667766667666654333
No 499
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.35 E-value=5.3e+02 Score=24.24 Aligned_cols=71 Identities=6% Similarity=0.021 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHh----------cCChhHHHHHH
Q 042098 139 VSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSK----------MGYAKEAVELF 208 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~ 208 (566)
.++++.+.+.++.|.-..+.=+.-.+...=.+...+.+++.+..... -|..|+..||. .|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34566666666666655554444445555566666666666553111 13334333332 46666666655
Q ss_pred HH
Q 042098 209 GR 210 (566)
Q Consensus 209 ~~ 210 (566)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 43
No 500
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.07 E-value=6.6e+02 Score=25.31 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHh
Q 042098 431 EGRRLFDLMSSS 442 (566)
Q Consensus 431 ~A~~~~~~~~~~ 442 (566)
+..+-.+.|+..
T Consensus 366 ~C~~ei~~mk~~ 377 (480)
T PHA03100 366 ECEKEIERMKEI 377 (480)
T ss_pred HHHHHHHHHHhc
Confidence 334444555543
Done!