Query 042098
Match_columns 566
No_of_seqs 566 out of 3786
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 04:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-41 6.7E-46 352.6 39.2 472 64-547 65-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.8E-37 9.4E-42 321.3 34.0 443 54-527 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-26 1.4E-30 223.6 45.2 372 93-530 9-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 7.6E-29 2.6E-33 247.0 22.9 213 204-461 9-222 (501)
5 4g26_A Pentatricopeptide repea 100.0 9.4E-29 3.2E-33 246.3 20.0 185 83-268 26-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-25 1.4E-29 216.5 39.3 355 127-546 7-370 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.6E-24 1.2E-28 218.1 33.6 429 85-546 8-480 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.5E-21 5.2E-26 195.1 38.5 346 153-547 25-413 (450)
9 3fp2_A TPR repeat-containing p 99.9 3E-22 1E-26 205.1 32.7 425 83-546 25-493 (537)
10 2gw1_A Mitochondrial precursor 99.9 7.5E-22 2.6E-26 200.9 35.0 435 59-521 13-489 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 9.7E-21 3.3E-25 189.2 35.1 376 82-535 25-445 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.2E-20 2.1E-24 187.9 32.6 428 59-520 32-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 9.6E-18 3.3E-22 161.8 36.2 312 184-547 2-338 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 6.2E-18 2.1E-22 163.1 34.4 328 153-528 2-353 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.7E-18 5.6E-23 164.4 25.8 354 59-477 9-371 (449)
16 2xm6_A Protein corresponding t 99.8 1.5E-16 5.2E-21 160.4 40.5 366 118-527 38-452 (490)
17 3hym_B Cell division cycle pro 99.8 2.5E-17 8.6E-22 156.9 30.4 291 184-532 21-322 (330)
18 3hym_B Cell division cycle pro 99.8 2.5E-17 8.4E-22 157.0 28.6 265 254-546 21-301 (330)
19 2xm6_A Protein corresponding t 99.8 1.5E-15 5E-20 153.2 42.7 362 139-546 27-434 (490)
20 2ooe_A Cleavage stimulation fa 99.8 1.5E-15 5.3E-20 154.6 41.9 409 82-545 12-493 (530)
21 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.8E-22 161.4 22.8 241 256-541 99-356 (368)
22 3mkr_A Coatomer subunit epsilo 99.8 4.4E-17 1.5E-21 151.6 23.5 242 259-536 38-286 (291)
23 1xi4_A Clathrin heavy chain; a 99.8 3.3E-14 1.1E-18 150.5 45.1 409 56-539 989-1440(1630)
24 2ooe_A Cleavage stimulation fa 99.8 5.9E-15 2E-19 150.3 38.2 384 118-546 12-456 (530)
25 1b89_A Protein (clathrin heavy 99.8 1.2E-16 4.1E-21 151.7 23.2 341 133-538 17-366 (449)
26 1xi4_A Clathrin heavy chain; a 99.8 4.5E-14 1.5E-18 149.4 43.7 418 41-537 941-1377(1630)
27 4g1t_A Interferon-induced prot 99.7 1.5E-15 5.3E-20 152.4 29.5 303 199-555 152-470 (472)
28 4eqf_A PEX5-related protein; a 99.7 3.6E-16 1.2E-20 151.3 23.1 235 285-545 64-311 (365)
29 4eqf_A PEX5-related protein; a 99.7 3.4E-16 1.2E-20 151.5 22.4 269 221-540 66-352 (365)
30 1fch_A Peroxisomal targeting s 99.7 1.2E-15 4.1E-20 147.8 25.4 255 265-545 35-315 (368)
31 3cv0_A Peroxisome targeting si 99.7 4.6E-16 1.6E-20 147.9 21.5 270 222-542 23-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 7.8E-15 2.7E-19 136.3 28.1 245 165-441 10-263 (291)
33 3cv0_A Peroxisome targeting si 99.7 4.2E-15 1.4E-19 141.2 22.8 278 184-512 20-317 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.4E-21 167.0 8.8 149 287-463 128-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.7 5E-17 1.7E-21 166.5 8.5 129 152-280 125-261 (1134)
36 3uq3_A Heat shock protein STI1 99.7 1.9E-14 6.4E-19 131.6 23.7 228 288-545 7-237 (258)
37 4g1t_A Interferon-induced prot 99.6 7.3E-14 2.5E-18 140.2 27.6 386 82-522 50-471 (472)
38 3e4b_A ALGK; tetratricopeptide 99.6 1E-13 3.5E-18 137.5 26.7 375 125-544 9-421 (452)
39 2pl2_A Hypothetical conserved 99.6 3.2E-14 1.1E-18 126.2 20.3 162 375-542 38-212 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.6E-14 2.9E-18 128.6 22.6 219 288-538 45-269 (275)
41 1ouv_A Conserved hypothetical 99.6 2.4E-12 8.1E-17 118.8 29.3 225 286-547 6-254 (273)
42 3uq3_A Heat shock protein STI1 99.6 4.5E-13 1.5E-17 122.3 23.0 232 222-524 7-256 (258)
43 3u4t_A TPR repeat-containing p 99.6 6.5E-13 2.2E-17 122.5 23.6 244 259-529 7-269 (272)
44 2ho1_A Type 4 fimbrial biogene 99.6 9.6E-13 3.3E-17 119.8 24.0 168 375-546 70-240 (252)
45 2ho1_A Type 4 fimbrial biogene 99.5 4.2E-12 1.4E-16 115.5 25.9 206 288-520 39-248 (252)
46 3e4b_A ALGK; tetratricopeptide 99.5 1.8E-12 6.2E-17 128.5 25.0 346 160-547 9-390 (452)
47 2vq2_A PILW, putative fimbrial 99.5 2.6E-12 9E-17 114.4 23.6 166 376-545 42-212 (225)
48 1ouv_A Conserved hypothetical 99.5 6.5E-12 2.2E-16 115.8 26.3 225 257-516 8-257 (273)
49 2q7f_A YRRB protein; TPR, prot 99.5 5.2E-13 1.8E-17 120.7 18.5 144 376-524 91-236 (243)
50 3vtx_A MAMA; tetratricopeptide 99.5 2E-12 6.7E-17 111.5 21.3 166 375-546 4-172 (184)
51 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.5E-16 109.9 26.5 207 288-521 10-222 (225)
52 2q7f_A YRRB protein; TPR, prot 99.5 7.4E-13 2.5E-17 119.7 18.5 168 375-547 56-225 (243)
53 3u4t_A TPR repeat-containing p 99.5 3.7E-12 1.3E-16 117.4 22.7 237 287-548 4-254 (272)
54 4a1s_A PINS, partner of inscut 99.5 1E-12 3.4E-17 129.2 19.6 235 258-543 89-371 (411)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.5E-12 5.3E-17 120.1 19.6 222 298-546 17-246 (275)
56 2h6f_A Protein farnesyltransfe 99.5 8.4E-12 2.9E-16 119.9 25.2 245 256-528 98-366 (382)
57 3sf4_A G-protein-signaling mod 99.5 1.8E-12 6.1E-17 127.1 20.9 58 257-314 49-115 (406)
58 3ro2_A PINS homolog, G-protein 99.5 1.2E-12 4.3E-17 124.4 18.6 167 378-545 125-333 (338)
59 3sf4_A G-protein-signaling mod 99.5 1.2E-12 4E-17 128.4 18.8 293 188-532 12-364 (406)
60 2h6f_A Protein farnesyltransfe 99.5 2.8E-12 9.5E-17 123.2 20.4 231 286-546 97-350 (382)
61 2pl2_A Hypothetical conserved 99.5 6.5E-12 2.2E-16 111.2 20.9 193 254-508 4-212 (217)
62 4abn_A Tetratricopeptide repea 99.5 3.4E-12 1.2E-16 127.4 20.0 209 302-539 84-316 (474)
63 4e6h_A MRNA 3'-END-processing 99.4 3E-09 1E-13 109.2 39.3 418 80-544 63-570 (679)
64 4a1s_A PINS, partner of inscut 99.4 1.4E-11 4.8E-16 121.0 20.2 270 192-513 55-375 (411)
65 3ro2_A PINS homolog, G-protein 99.4 1.3E-11 4.5E-16 117.3 19.2 136 377-513 184-335 (338)
66 3ulq_A Response regulator aspa 99.4 5.3E-12 1.8E-16 122.8 16.5 233 293-544 110-368 (383)
67 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-11 4.1E-16 128.4 19.3 163 375-543 8-173 (723)
68 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-12 7.2E-17 121.5 12.1 167 376-544 111-307 (311)
69 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 5.9E-16 105.3 16.6 166 376-546 8-175 (186)
70 3ulq_A Response regulator aspa 99.4 1.2E-10 4E-15 113.2 24.0 233 260-511 108-369 (383)
71 4e6h_A MRNA 3'-END-processing 99.3 1.6E-08 5.5E-13 103.8 39.3 434 41-516 53-576 (679)
72 2ond_A Cleavage stimulation fa 99.3 4.5E-10 1.6E-14 105.3 25.5 185 303-515 81-275 (308)
73 3vtx_A MAMA; tetratricopeptide 99.3 1.4E-10 4.8E-15 99.6 19.5 169 285-515 4-175 (184)
74 2ond_A Cleavage stimulation fa 99.3 6.5E-10 2.2E-14 104.3 25.3 217 303-547 33-273 (308)
75 3q15_A PSP28, response regulat 99.3 6.6E-10 2.3E-14 107.6 25.2 131 377-510 223-365 (378)
76 3q15_A PSP28, response regulat 99.3 5.7E-10 2E-14 108.1 23.9 167 376-543 182-364 (378)
77 4abn_A Tetratricopeptide repea 99.3 3.9E-11 1.3E-15 119.7 16.0 168 373-546 99-289 (474)
78 1hz4_A MALT regulatory protein 99.3 4E-09 1.4E-13 102.0 29.7 265 262-543 21-321 (373)
79 4i17_A Hypothetical protein; T 99.3 1.2E-10 4.2E-15 104.0 17.6 169 374-547 5-212 (228)
80 3nf1_A KLC 1, kinesin light ch 99.3 5.6E-11 1.9E-15 111.6 14.7 242 257-513 29-310 (311)
81 4i17_A Hypothetical protein; T 99.2 2E-09 6.8E-14 96.0 21.8 209 284-526 5-225 (228)
82 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.7E-09 5.7E-14 96.3 19.5 170 376-549 4-218 (225)
83 1hz4_A MALT regulatory protein 99.2 1.2E-08 4.1E-13 98.6 27.0 135 377-512 175-324 (373)
84 3mv2_B Coatomer subunit epsilo 99.2 1E-08 3.5E-13 93.3 23.6 135 376-519 136-291 (310)
85 3as5_A MAMA; tetratricopeptide 99.1 1.8E-09 6.3E-14 92.4 17.2 155 359-518 22-181 (186)
86 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4E-13 92.9 22.5 167 374-547 98-285 (310)
87 1qqe_A Vesicular transport pro 99.1 5E-09 1.7E-13 97.3 20.2 147 377-523 118-282 (292)
88 3edt_B KLC 2, kinesin light ch 99.1 8.4E-10 2.9E-14 101.8 14.3 169 376-544 85-281 (283)
89 3qky_A Outer membrane assembly 99.1 2.5E-09 8.6E-14 97.6 16.7 169 374-546 13-226 (261)
90 2fo7_A Synthetic consensus TPR 99.1 3.3E-09 1.1E-13 85.4 15.2 128 416-545 4-133 (136)
91 4gyw_A UDP-N-acetylglucosamine 99.1 2.9E-09 9.9E-14 110.6 18.2 130 375-510 42-174 (723)
92 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.9E-14 100.4 14.9 168 376-543 77-268 (292)
93 3rjv_A Putative SEL1 repeat pr 99.0 1.9E-08 6.4E-13 88.4 19.4 163 374-547 16-200 (212)
94 4ga2_A E3 SUMO-protein ligase 99.0 3.8E-10 1.3E-14 93.1 7.9 140 384-530 5-149 (150)
95 3qky_A Outer membrane assembly 99.0 8.1E-09 2.8E-13 94.2 17.0 195 284-534 13-251 (261)
96 3edt_B KLC 2, kinesin light ch 99.0 1.6E-08 5.5E-13 93.1 19.1 134 376-510 127-281 (283)
97 3qou_A Protein YBBN; thioredox 99.0 6E-09 2E-13 96.4 15.9 175 363-543 104-283 (287)
98 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.6E-13 81.7 15.5 132 378-514 3-136 (136)
99 2vsy_A XCC0866; transferase, g 99.0 1.1E-08 3.7E-13 104.9 16.3 158 359-522 3-169 (568)
100 2pzi_A Probable serine/threoni 99.0 3.7E-09 1.3E-13 110.3 12.9 151 373-530 430-583 (681)
101 3u3w_A Transcriptional activat 98.9 1.7E-07 5.7E-12 87.0 22.6 164 379-543 78-265 (293)
102 4ga2_A E3 SUMO-protein ligase 98.9 1.9E-09 6.4E-14 88.9 8.0 125 419-546 3-131 (150)
103 2r5s_A Uncharacterized protein 98.9 7E-09 2.4E-13 88.2 11.5 160 378-543 8-172 (176)
104 3gyz_A Chaperone protein IPGC; 98.9 6.7E-09 2.3E-13 85.2 10.7 103 444-546 30-135 (151)
105 4gco_A Protein STI-1; structur 98.9 1.6E-08 5.5E-13 80.3 10.9 106 415-523 15-123 (126)
106 2vsy_A XCC0866; transferase, g 98.9 4.8E-08 1.7E-12 100.1 16.8 153 389-547 2-160 (568)
107 2pzi_A Probable serine/threoni 98.9 1.2E-08 4.2E-13 106.4 12.3 153 387-546 402-565 (681)
108 2ifu_A Gamma-SNAP; membrane fu 98.8 2.3E-07 7.9E-12 86.7 19.9 156 378-536 78-253 (307)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.1E-08 3.1E-12 84.0 15.7 130 376-514 6-154 (213)
110 2qfc_A PLCR protein; TPR, HTH, 98.8 9.5E-07 3.2E-11 81.9 22.8 165 377-542 76-264 (293)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 8.4E-08 2.9E-12 89.7 15.7 163 379-542 39-222 (307)
112 3urz_A Uncharacterized protein 98.8 1.8E-07 6.2E-12 81.8 16.4 181 288-514 6-190 (208)
113 4gco_A Protein STI-1; structur 98.8 9.2E-08 3.1E-12 75.9 13.1 103 444-546 7-112 (126)
114 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-08 5.7E-13 82.9 8.9 95 450-544 22-118 (148)
115 3urz_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 83.3 14.5 162 378-547 6-189 (208)
116 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.9E-12 87.8 15.4 136 410-548 114-252 (287)
117 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.9E-07 2E-11 79.6 18.5 88 426-516 109-219 (225)
118 2uy1_A Cleavage stimulation fa 98.7 1.9E-05 6.6E-10 78.5 30.8 367 98-509 8-412 (493)
119 1a17_A Serine/threonine protei 98.7 2.2E-07 7.5E-12 77.7 13.8 126 415-543 15-145 (166)
120 2r5s_A Uncharacterized protein 98.7 2E-07 6.8E-12 79.1 12.9 130 416-548 9-141 (176)
121 2e2e_A Formate-dependent nitri 98.7 8.1E-08 2.8E-12 81.6 10.2 126 386-517 20-151 (177)
122 1p5q_A FKBP52, FK506-binding p 98.7 2.2E-07 7.4E-12 88.0 13.9 93 449-541 196-291 (336)
123 3rjv_A Putative SEL1 repeat pr 98.7 1.8E-06 6.1E-11 75.6 18.8 126 378-512 52-199 (212)
124 2xcb_A PCRH, regulatory protei 98.7 1.5E-07 5E-12 76.6 10.7 93 451-543 20-114 (142)
125 1na0_A Designed protein CTPR3; 98.7 4.1E-07 1.4E-11 71.7 13.1 115 413-529 9-125 (125)
126 2vyi_A SGTA protein; chaperone 98.7 2.9E-07 1E-11 73.2 12.3 116 413-531 12-130 (131)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.3E-06 4.5E-11 76.5 17.5 80 359-441 20-99 (213)
128 2kck_A TPR repeat; tetratricop 98.6 1.7E-07 5.8E-12 72.3 10.1 100 449-548 6-110 (112)
129 4f3v_A ESX-1 secretion system 98.6 3.2E-07 1.1E-11 82.4 12.9 182 359-547 20-240 (282)
130 2uy1_A Cleavage stimulation fa 98.6 5.6E-06 1.9E-10 82.4 23.0 103 131-249 6-118 (493)
131 2lni_A Stress-induced-phosphop 98.6 3E-07 1E-11 73.5 11.5 115 413-530 16-133 (133)
132 3dra_A Protein farnesyltransfe 98.6 9.4E-06 3.2E-10 74.6 22.3 149 390-543 124-286 (306)
133 3gw4_A Uncharacterized protein 98.6 7.6E-07 2.6E-11 77.3 14.4 154 387-543 3-175 (203)
134 2c2l_A CHIP, carboxy terminus 98.6 2.6E-07 8.8E-12 85.0 11.7 158 375-544 37-199 (281)
135 3upv_A Heat shock protein STI1 98.6 3.7E-07 1.3E-11 72.4 10.9 92 452-543 7-100 (126)
136 1hxi_A PEX5, peroxisome target 98.6 1.9E-07 6.5E-12 73.4 8.4 96 451-546 19-116 (121)
137 3gyz_A Chaperone protein IPGC; 98.6 4.4E-07 1.5E-11 74.2 10.8 100 413-515 36-138 (151)
138 2vgx_A Chaperone SYCD; alterna 98.6 4.3E-07 1.5E-11 74.3 10.7 106 412-520 20-128 (148)
139 2qfc_A PLCR protein; TPR, HTH, 98.6 4.5E-06 1.5E-10 77.3 18.8 173 288-510 77-266 (293)
140 2fbn_A 70 kDa peptidylprolyl i 98.5 8.1E-08 2.8E-12 83.3 5.9 131 415-545 40-187 (198)
141 3q49_B STIP1 homology and U bo 98.5 7.3E-07 2.5E-11 71.8 11.3 92 451-542 11-104 (137)
142 3sz7_A HSC70 cochaperone (SGT) 98.5 4E-07 1.4E-11 76.1 9.9 109 411-522 9-120 (164)
143 2lni_A Stress-induced-phosphop 98.5 7.9E-07 2.7E-11 71.0 11.3 98 449-546 16-115 (133)
144 3u3w_A Transcriptional activat 98.5 3.6E-05 1.2E-09 71.1 23.8 169 291-510 80-266 (293)
145 3dra_A Protein farnesyltransfe 98.5 0.0002 6.7E-09 65.9 27.8 226 270-523 48-301 (306)
146 1elw_A TPR1-domain of HOP; HOP 98.5 9.6E-07 3.3E-11 68.6 10.8 108 414-524 5-115 (118)
147 1na0_A Designed protein CTPR3; 98.5 9.8E-07 3.4E-11 69.4 10.9 98 449-546 9-108 (125)
148 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 74.7 11.5 122 424-548 21-148 (177)
149 3gw4_A Uncharacterized protein 98.5 1.3E-05 4.4E-10 69.3 18.7 159 267-475 4-173 (203)
150 4gcn_A Protein STI-1; structur 98.5 6.3E-07 2.2E-11 71.1 9.2 92 452-543 11-111 (127)
151 3upv_A Heat shock protein STI1 98.5 2.2E-06 7.4E-11 67.9 12.2 110 414-526 5-123 (126)
152 1elw_A TPR1-domain of HOP; HOP 98.5 2.8E-06 9.7E-11 65.9 12.6 98 449-546 4-103 (118)
153 2dba_A Smooth muscle cell asso 98.5 1.9E-06 6.5E-11 70.3 12.0 113 411-526 26-144 (148)
154 2xcb_A PCRH, regulatory protei 98.4 1.8E-06 6.1E-11 70.1 11.3 105 414-521 19-126 (142)
155 2dba_A Smooth muscle cell asso 98.4 3.4E-06 1.2E-10 68.7 13.2 96 449-544 28-128 (148)
156 2xev_A YBGF; tetratricopeptide 98.4 9.3E-07 3.2E-11 70.3 9.0 100 419-521 8-116 (129)
157 3sz7_A HSC70 cochaperone (SGT) 98.4 3.8E-06 1.3E-10 70.1 13.0 96 376-477 11-107 (164)
158 2vyi_A SGTA protein; chaperone 98.4 1.9E-06 6.5E-11 68.4 10.4 98 449-546 12-111 (131)
159 1a17_A Serine/threonine protei 98.4 1.1E-05 3.6E-10 67.2 14.4 129 376-510 13-146 (166)
160 3q49_B STIP1 homology and U bo 98.3 4.9E-06 1.7E-10 66.8 11.7 111 411-524 7-125 (137)
161 2hr2_A Hypothetical protein; a 98.3 3.5E-06 1.2E-10 68.2 9.9 63 482-544 58-131 (159)
162 2xev_A YBGF; tetratricopeptide 98.3 1.1E-05 3.9E-10 63.8 12.9 93 453-545 6-106 (129)
163 3ro3_A PINS homolog, G-protein 98.3 4.1E-06 1.4E-10 69.3 10.6 129 415-543 11-157 (164)
164 4f3v_A ESX-1 secretion system 98.3 7.8E-06 2.7E-10 73.4 12.4 139 378-523 104-249 (282)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.2E-06 2.1E-10 81.5 12.7 94 449-542 317-413 (457)
166 1elr_A TPR2A-domain of HOP; HO 98.3 3.3E-06 1.1E-10 67.0 8.8 95 451-545 6-109 (131)
167 3rkv_A Putative peptidylprolyl 98.3 4.1E-06 1.4E-10 69.7 9.6 103 413-515 11-131 (162)
168 3k9i_A BH0479 protein; putativ 98.2 1.4E-06 4.6E-11 68.0 5.8 90 426-516 3-96 (117)
169 4gcn_A Protein STI-1; structur 98.2 1.1E-05 3.8E-10 63.8 11.2 106 377-513 9-115 (127)
170 1elr_A TPR2A-domain of HOP; HO 98.2 6.8E-06 2.3E-10 65.1 10.1 107 417-526 8-123 (131)
171 1ihg_A Cyclophilin 40; ppiase 98.2 9.4E-06 3.2E-10 77.6 12.5 138 376-537 223-363 (370)
172 2fbn_A 70 kDa peptidylprolyl i 98.2 1.4E-06 4.8E-11 75.4 6.0 121 424-546 15-153 (198)
173 1wao_1 Serine/threonine protei 98.2 2.6E-06 8.8E-11 84.6 8.6 116 422-540 15-135 (477)
174 2if4_A ATFKBP42; FKBP-like, al 98.2 2.5E-06 8.4E-11 80.7 8.0 152 376-549 179-333 (338)
175 3q7a_A Farnesyltransferase alp 98.2 0.0012 4E-08 61.4 25.2 224 87-315 58-331 (349)
176 1p5q_A FKBP52, FK506-binding p 98.2 2.2E-05 7.5E-10 74.1 13.8 128 375-509 146-293 (336)
177 3q7a_A Farnesyltransferase alp 98.2 0.00027 9.4E-09 65.7 20.4 164 375-543 122-330 (349)
178 2c2l_A CHIP, carboxy terminus 98.2 9.1E-06 3.1E-10 74.6 10.6 111 411-524 2-115 (281)
179 4b4t_Q 26S proteasome regulato 98.2 4.4E-05 1.5E-09 75.0 16.2 165 378-543 57-244 (434)
180 1hxi_A PEX5, peroxisome target 98.1 1.2E-05 4.1E-10 63.0 9.6 91 421-514 25-118 (121)
181 2kck_A TPR repeat; tetratricop 98.1 1E-05 3.5E-10 62.0 8.8 99 415-515 8-111 (112)
182 4b4t_Q 26S proteasome regulato 98.1 0.001 3.4E-08 65.2 25.1 32 512-545 353-384 (434)
183 3dss_A Geranylgeranyl transfer 98.1 0.0012 4.1E-08 61.0 23.2 169 373-546 105-306 (331)
184 3rkv_A Putative peptidylprolyl 98.1 1E-05 3.5E-10 67.2 8.6 96 377-476 12-124 (162)
185 3ma5_A Tetratricopeptide repea 98.1 2.2E-05 7.7E-10 58.9 9.6 66 479-544 5-70 (100)
186 3ro3_A PINS homolog, G-protein 98.1 2.7E-05 9.3E-10 64.2 11.1 136 376-512 9-160 (164)
187 3k9i_A BH0479 protein; putativ 98.1 3.2E-06 1.1E-10 65.9 4.5 85 461-545 2-91 (117)
188 3n71_A Histone lysine methyltr 98.0 2.3E-05 7.9E-10 77.3 11.3 131 422-552 318-472 (490)
189 2hr2_A Hypothetical protein; a 98.0 3.2E-05 1.1E-09 62.5 9.7 72 451-522 59-143 (159)
190 1dce_A Protein (RAB geranylger 98.0 0.00091 3.1E-08 67.6 21.8 153 375-533 62-244 (567)
191 2kat_A Uncharacterized protein 97.9 2.3E-05 8E-10 60.6 7.6 64 449-512 19-84 (115)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 3.6E-05 1.2E-09 72.7 10.2 136 358-515 192-333 (338)
193 1klx_A Cysteine rich protein B 97.9 0.00012 4.2E-09 58.6 12.0 113 427-547 9-129 (138)
194 1ihg_A Cyclophilin 40; ppiase 97.9 3.8E-05 1.3E-09 73.4 9.9 115 414-546 224-338 (370)
195 2l6j_A TPR repeat-containing p 97.9 1.6E-05 5.5E-10 60.9 6.1 92 448-539 3-102 (111)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.8E-05 1.6E-09 75.1 10.7 67 481-547 317-383 (457)
197 3bee_A Putative YFRE protein; 97.9 8.9E-05 3E-09 54.4 9.2 72 479-551 4-78 (93)
198 1na3_A Designed protein CTPR2; 97.9 4.5E-05 1.5E-09 55.8 7.7 81 449-529 9-91 (91)
199 3dss_A Geranylgeranyl transfer 97.8 0.0096 3.3E-07 55.0 24.4 230 267-525 41-319 (331)
200 2l6j_A TPR repeat-containing p 97.8 0.0001 3.5E-09 56.2 9.0 68 480-547 3-70 (111)
201 1zu2_A Mitochondrial import re 97.8 1.2E-05 4E-10 64.9 3.2 98 424-546 13-122 (158)
202 1wao_1 Serine/threonine protei 97.7 0.00066 2.3E-08 67.3 15.7 130 374-509 38-196 (477)
203 1na3_A Designed protein CTPR2; 97.6 0.00024 8.1E-09 51.8 8.6 67 480-546 8-74 (91)
204 1dce_A Protein (RAB geranylger 97.6 0.00078 2.7E-08 68.1 14.1 156 388-550 40-227 (567)
205 1wy6_A Hypothetical protein ST 97.6 0.013 4.6E-07 44.7 16.6 141 386-547 17-157 (172)
206 1klx_A Cysteine rich protein B 97.5 0.0014 4.7E-08 52.4 12.2 113 389-512 8-128 (138)
207 3n71_A Histone lysine methyltr 97.4 0.0005 1.7E-08 67.8 9.9 127 383-510 316-464 (490)
208 1zu2_A Mitochondrial import re 97.4 0.00033 1.1E-08 56.5 7.1 125 386-544 12-147 (158)
209 2kat_A Uncharacterized protein 97.4 0.00055 1.9E-08 52.6 8.0 62 481-542 19-80 (115)
210 2kc7_A BFR218_protein; tetratr 97.4 0.00057 1.9E-08 50.8 7.5 79 455-541 6-87 (99)
211 2kc7_A BFR218_protein; tetratr 97.2 0.00023 7.8E-09 53.0 4.0 52 422-476 9-62 (99)
212 3ma5_A Tetratricopeptide repea 97.2 0.0016 5.6E-08 48.4 8.8 65 375-442 6-70 (100)
213 3qww_A SET and MYND domain-con 97.2 0.00036 1.2E-08 67.6 5.9 61 482-542 341-409 (433)
214 3qwp_A SET and MYND domain-con 97.2 0.00073 2.5E-08 65.6 7.9 100 420-519 294-414 (429)
215 3ly7_A Transcriptional activat 97.1 0.0062 2.1E-07 56.6 13.1 137 374-514 192-343 (372)
216 3lvg_A Clathrin heavy chain 1; 97.1 5.6E-06 1.9E-10 78.0 -7.4 225 58-311 60-287 (624)
217 3qww_A SET and MYND domain-con 97.0 0.0025 8.4E-08 61.8 9.9 94 426-519 311-425 (433)
218 3ly7_A Transcriptional activat 97.0 0.0089 3E-07 55.5 12.9 136 409-548 190-343 (372)
219 3qwp_A SET and MYND domain-con 97.0 0.0046 1.6E-07 59.9 11.2 85 458-542 296-398 (429)
220 3mkq_A Coatomer beta'-subunit; 96.8 0.053 1.8E-06 57.7 19.4 47 265-313 662-708 (814)
221 3u64_A Protein TP_0956; tetrat 96.8 0.0057 2E-07 54.4 9.5 87 466-552 180-277 (301)
222 1qsa_A Protein (soluble lytic 96.5 0.81 2.8E-05 46.2 28.2 56 454-509 290-347 (618)
223 3mkq_A Coatomer beta'-subunit; 96.5 0.24 8.3E-06 52.6 21.7 152 266-475 610-762 (814)
224 2v5f_A Prolyl 4-hydroxylase su 96.5 0.014 4.9E-07 43.6 8.6 70 452-521 8-86 (104)
225 1pc2_A Mitochondria fission pr 96.5 0.0062 2.1E-07 48.5 6.6 94 426-521 11-111 (152)
226 1pc2_A Mitochondria fission pr 96.3 0.023 7.7E-07 45.3 8.8 81 392-477 14-99 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.027 9.2E-07 42.0 8.4 67 480-546 4-77 (104)
228 3bee_A Putative YFRE protein; 95.6 0.16 5.3E-06 36.8 10.3 66 374-442 4-72 (93)
229 1nzn_A CGI-135 protein, fissio 95.6 0.38 1.3E-05 36.7 12.4 94 426-521 14-114 (126)
230 3mkq_B Coatomer subunit alpha; 95.3 0.75 2.6E-05 37.6 14.2 45 266-312 16-60 (177)
231 4gns_B Protein CSD3, chitin bi 95.0 0.19 6.3E-06 51.8 12.0 53 489-541 345-397 (754)
232 3mkq_B Coatomer subunit alpha; 94.9 1.3 4.4E-05 36.2 15.0 104 163-283 14-117 (177)
233 4h7y_A Dual specificity protei 94.6 0.34 1.2E-05 38.0 9.8 59 463-521 74-134 (161)
234 3u64_A Protein TP_0956; tetrat 94.6 0.086 3E-06 46.9 7.3 82 429-513 179-272 (301)
235 1nzn_A CGI-135 protein, fissio 93.9 0.16 5.5E-06 38.8 6.6 83 464-546 16-105 (126)
236 3lvg_A Clathrin heavy chain 1; 93.1 0.00016 5.4E-09 68.5 -13.4 114 187-311 56-169 (624)
237 1y8m_A FIS1; mitochondria, unk 92.8 1.5 5.3E-05 34.0 10.6 75 446-520 36-116 (144)
238 1wy6_A Hypothetical protein ST 92.7 2.7 9.1E-05 32.3 13.4 83 358-445 74-156 (172)
239 2ff4_A Probable regulatory pro 92.5 0.41 1.4E-05 45.5 8.7 68 484-551 174-246 (388)
240 3ffl_A Anaphase-promoting comp 92.1 1.1 3.7E-05 36.0 9.2 26 516-541 123-148 (167)
241 3txn_A 26S proteasome regulato 91.2 5.3 0.00018 37.7 14.4 163 377-542 20-208 (394)
242 3ffl_A Anaphase-promoting comp 90.9 1.9 6.5E-05 34.6 9.4 63 379-442 23-92 (167)
243 3o48_A Mitochondria fission 1 90.6 0.99 3.4E-05 34.6 7.2 74 446-519 37-116 (134)
244 4b4t_P 26S proteasome regulato 90.3 5.4 0.00019 38.5 14.2 166 375-543 55-246 (445)
245 1v54_E Cytochrome C oxidase po 89.4 4.2 0.00014 29.3 9.0 64 391-458 25-88 (109)
246 2wpv_A GET4, UPF0363 protein Y 89.0 13 0.00044 33.7 21.1 167 156-348 35-215 (312)
247 2ff4_A Probable regulatory pro 88.5 3.7 0.00013 38.9 11.3 72 378-452 173-248 (388)
248 4h7y_A Dual specificity protei 88.1 8.3 0.00028 30.4 11.8 58 199-257 74-131 (161)
249 4fhn_B Nucleoporin NUP120; pro 87.8 24 0.00081 39.0 18.7 191 260-471 817-1042(1139)
250 3lpz_A GET4 (YOR164C homolog); 87.4 17 0.00058 33.2 21.9 134 156-300 37-181 (336)
251 1zbp_A Hypothetical protein VP 86.8 0.92 3.1E-05 39.7 5.4 52 492-543 8-59 (273)
252 4fhn_B Nucleoporin NUP120; pro 86.8 26 0.00088 38.7 18.3 170 291-468 817-990 (1139)
253 1zbp_A Hypothetical protein VP 86.4 12 0.00043 32.7 12.2 120 384-516 5-135 (273)
254 4ady_A RPN2, 26S proteasome re 85.7 40 0.0014 35.8 28.9 124 381-509 529-657 (963)
255 1y8m_A FIS1; mitochondria, unk 85.2 6.9 0.00023 30.4 9.0 65 479-543 37-105 (144)
256 3lpz_A GET4 (YOR164C homolog); 85.0 23 0.00078 32.3 18.9 130 58-199 41-181 (336)
257 4ady_A RPN2, 26S proteasome re 84.8 44 0.0015 35.5 24.2 106 382-492 566-672 (963)
258 2y69_E Cytochrome C oxidase su 84.7 9.2 0.00032 29.3 9.1 64 391-458 68-131 (152)
259 3esl_A Checkpoint serine/threo 84.3 12 0.00042 31.1 10.7 46 465-510 95-144 (202)
260 2uwj_G Type III export protein 82.9 11 0.00037 27.0 9.6 86 236-326 22-107 (115)
261 2uwj_G Type III export protein 82.5 11 0.00039 27.0 9.1 80 132-215 19-98 (115)
262 1v54_E Cytochrome C oxidase po 82.3 12 0.00041 27.0 9.4 59 464-522 25-86 (109)
263 2p58_C Putative type III secre 82.2 12 0.0004 26.9 10.2 86 235-325 22-107 (116)
264 2p58_C Putative type III secre 82.0 12 0.00041 26.9 9.4 80 132-215 20-99 (116)
265 4gns_B Protein CSD3, chitin bi 81.9 49 0.0017 34.2 16.4 54 383-439 344-397 (754)
266 1qsa_A Protein (soluble lytic 81.4 48 0.0016 33.4 34.7 143 382-539 291-437 (618)
267 4a1g_A Mitotic checkpoint seri 78.9 20 0.00068 28.3 9.7 49 500-548 84-134 (152)
268 3ltj_A Alpharep-4; protein eng 77.3 29 0.001 28.6 16.4 16 285-300 151-166 (201)
269 3o48_A Mitochondria fission 1 77.0 23 0.00078 27.2 9.9 72 409-481 36-111 (134)
270 3ltj_A Alpharep-4; protein eng 76.4 31 0.0011 28.4 20.7 48 153-200 58-105 (201)
271 2wvi_A Mitotic checkpoint seri 74.5 29 0.00098 27.8 9.6 47 500-546 79-127 (164)
272 4b4t_R RPN7, 26S proteasome re 74.1 13 0.00045 35.6 9.2 60 415-475 133-194 (429)
273 2y69_E Cytochrome C oxidase su 72.9 30 0.001 26.6 9.4 45 478-522 85-129 (152)
274 3ltm_A Alpha-REP4; protein eng 72.5 41 0.0014 28.0 20.4 61 253-314 124-184 (211)
275 1wdy_A 2-5A-dependent ribonucl 71.4 28 0.00097 30.5 10.5 108 64-181 14-129 (285)
276 4b4t_R RPN7, 26S proteasome re 68.7 19 0.00066 34.5 9.0 98 378-475 133-234 (429)
277 3ltm_A Alpha-REP4; protein eng 65.2 58 0.002 27.0 18.8 155 68-235 18-172 (211)
278 3eiq_C Programmed cell death p 64.7 43 0.0015 30.9 10.0 69 259-327 221-294 (358)
279 4b4t_P 26S proteasome regulato 64.3 1E+02 0.0035 29.5 25.5 183 98-281 30-244 (445)
280 1k1a_A B-cell lymphoma 3-encod 62.4 34 0.0011 29.1 8.8 86 91-181 14-103 (241)
281 2wpv_A GET4, UPF0363 protein Y 57.0 1.1E+02 0.0038 27.5 21.2 115 258-400 36-158 (312)
282 4aez_C MAD3, mitotic spindle c 54.8 69 0.0024 27.1 8.6 32 480-511 149-180 (223)
283 1wdy_A 2-5A-dependent ribonucl 54.7 50 0.0017 28.8 8.8 145 64-219 48-213 (285)
284 3bqo_A Telomeric repeat-bindin 52.6 44 0.0015 27.5 6.7 72 465-536 94-172 (211)
285 1k1a_A B-cell lymphoma 3-encod 52.3 46 0.0016 28.2 7.9 85 125-210 12-101 (241)
286 2d2s_A Exocyst complex compone 49.2 50 0.0017 28.4 7.2 91 381-475 23-117 (235)
287 4gq2_M Nucleoporin NUP120; bet 48.1 2.1E+02 0.0071 30.7 13.4 86 419-510 816-926 (950)
288 2nsz_A Programmed cell death p 47.5 65 0.0022 24.5 7.0 64 259-322 11-79 (129)
289 3esl_A Checkpoint serine/threo 47.3 1.2E+02 0.0042 25.1 11.5 53 392-447 95-148 (202)
290 2d2s_A Exocyst complex compone 46.6 85 0.0029 26.9 8.3 22 90-112 25-46 (235)
291 3ygs_P Procaspase 9; apoptosis 46.2 42 0.0014 24.0 5.3 61 42-104 25-88 (97)
292 1ug3_A EIF4GI, eukaryotic prot 46.2 73 0.0025 29.2 8.4 62 259-320 15-80 (339)
293 3eu9_A Huntingtin-interacting 46.0 41 0.0014 28.4 6.5 18 162-179 81-98 (240)
294 1oyz_A Hypothetical protein YI 44.3 1.6E+02 0.0054 25.6 20.8 21 180-200 137-157 (280)
295 3jxi_A Vanilloid receptor-rela 44.1 28 0.00095 30.2 5.1 91 91-182 10-118 (260)
296 2p1h_A APAF-1, apoptotic prote 42.3 62 0.0021 22.8 5.8 61 40-101 24-84 (94)
297 3hra_A Ankyrin repeat family p 41.2 67 0.0023 26.1 6.9 108 64-180 14-129 (201)
298 2ion_A PDCD4, programmed cell 39.9 55 0.0019 25.8 5.6 64 259-322 13-81 (152)
299 2nsz_A Programmed cell death p 39.1 1.2E+02 0.0043 22.9 8.0 62 158-219 11-77 (129)
300 1ya0_A SMG-7 transcript varian 38.4 1.2E+02 0.0041 29.6 8.8 55 487-541 158-212 (497)
301 4b4t_S RPN3, 26S proteasome re 38.0 66 0.0023 31.4 6.8 67 449-515 231-304 (523)
302 2fu4_A Ferric uptake regulatio 37.5 94 0.0032 21.0 6.6 61 108-169 6-67 (83)
303 3ygs_P Procaspase 9; apoptosis 35.9 1E+02 0.0035 21.9 6.0 37 269-305 51-87 (97)
304 3hra_A Ankyrin repeat family p 35.7 92 0.0031 25.3 6.9 87 87-180 7-95 (201)
305 3i5p_A Nucleoporin NUP170; hel 35.7 2.9E+02 0.01 27.0 11.0 66 479-544 176-246 (525)
306 3eu9_A Huntingtin-interacting 34.8 64 0.0022 27.1 5.9 106 64-179 18-131 (240)
307 2fe3_A Peroxide operon regulat 33.9 1.2E+02 0.004 23.5 6.7 17 199-215 35-51 (145)
308 1mzb_A Ferric uptake regulatio 32.6 1.2E+02 0.0043 23.0 6.6 60 109-169 8-68 (136)
309 2w57_A Ferric uptake regulatio 31.9 1.3E+02 0.0046 23.4 6.7 61 108-169 6-67 (150)
310 2fe3_A Peroxide operon regulat 31.4 1.6E+02 0.0055 22.7 7.1 45 380-426 25-69 (145)
311 3bu8_A Telomeric repeat-bindin 30.9 2E+02 0.0067 24.2 7.4 68 429-496 88-162 (235)
312 2xig_A Ferric uptake regulatio 30.3 1.6E+02 0.0055 22.9 6.9 26 381-406 31-56 (150)
313 2etb_A Transient receptor pote 29.6 2.3E+02 0.0078 24.0 8.8 89 90-181 6-114 (256)
314 4b4t_S RPN3, 26S proteasome re 29.1 1.4E+02 0.0048 29.2 7.4 66 413-478 231-299 (523)
315 2ion_A PDCD4, programmed cell 28.7 1.5E+02 0.0053 23.2 6.5 65 378-446 11-77 (152)
316 3ljn_A Hypothetical protein; a 28.6 73 0.0025 29.3 5.5 19 262-280 177-195 (364)
317 3kea_A K1L; tropism, ANK repea 28.5 2.2E+02 0.0075 24.9 8.5 17 163-179 101-117 (285)
318 4a1g_A Mitotic checkpoint seri 28.5 2.1E+02 0.0073 22.4 10.5 50 395-447 84-134 (152)
319 2qx5_A Nucleoporin NIC96; mRNA 28.4 4.8E+02 0.016 26.4 23.0 42 156-198 155-199 (661)
320 2p1h_A APAF-1, apoptotic prote 28.1 1.5E+02 0.0053 20.6 6.5 61 138-202 24-84 (94)
321 2pnn_A Transient receptor pote 28.0 86 0.0029 27.2 5.7 97 82-181 10-125 (273)
322 3b7b_A Euchromatic histone-lys 27.9 71 0.0024 26.9 5.0 79 93-180 18-100 (237)
323 2xig_A Ferric uptake regulatio 27.9 1.8E+02 0.0061 22.7 6.8 17 236-252 42-58 (150)
324 4aez_C MAD3, mitotic spindle c 27.6 2.8E+02 0.0095 23.4 8.2 54 101-154 131-185 (223)
325 3eiq_C Programmed cell death p 27.4 3.7E+02 0.013 24.7 14.4 65 379-447 220-286 (358)
326 4ets_A Ferric uptake regulatio 26.1 1.5E+02 0.0051 23.6 6.1 57 212-269 25-83 (162)
327 2zu6_B Programmed cell death p 25.3 3.7E+02 0.013 24.1 9.9 163 189-352 7-233 (307)
328 3aji_A 26S proteasome non-ATPa 25.2 1.1E+02 0.0036 25.6 5.6 20 297-320 180-199 (231)
329 3bqo_A Telomeric repeat-bindin 24.6 3E+02 0.01 22.7 8.3 48 358-405 91-146 (211)
330 4ets_A Ferric uptake regulatio 24.3 1.2E+02 0.0043 24.0 5.3 46 380-427 36-83 (162)
331 2rfa_A Transient receptor pote 24.1 2.8E+02 0.0096 22.9 8.2 43 64-108 12-58 (232)
332 2w57_A Ferric uptake regulatio 24.1 2.5E+02 0.0087 21.8 7.4 61 209-270 6-67 (150)
333 3eyy_A Putative iron uptake re 23.5 1.7E+02 0.0058 22.6 5.9 45 380-427 22-66 (145)
334 2wvi_A Mitotic checkpoint seri 23.1 2.9E+02 0.0098 22.0 11.2 51 395-448 79-130 (164)
335 2b7e_A PRE-mRNA processing pro 22.9 91 0.0031 19.8 3.2 30 100-129 2-31 (59)
336 1oyz_A Hypothetical protein YI 22.8 3.7E+02 0.013 23.1 24.9 19 181-199 64-82 (280)
337 3bge_A Predicted ATPase; struc 21.5 3.5E+02 0.012 22.3 8.3 61 382-445 10-78 (201)
338 2o03_A Probable zinc uptake re 21.4 1.7E+02 0.0058 22.1 5.4 45 190-234 15-59 (131)
339 1n11_A Ankyrin; clathrin, BAND 21.3 3.9E+02 0.013 24.9 9.4 52 125-180 17-70 (437)
340 2fu4_A Ferric uptake regulatio 21.3 1.9E+02 0.0066 19.3 7.4 59 210-269 7-66 (83)
341 3kea_A K1L; tropism, ANK repea 20.9 1.9E+02 0.0064 25.3 6.5 13 267-279 138-150 (285)
342 4g8k_A 2-5A-dependent ribonucl 20.7 4.5E+02 0.015 23.4 11.2 263 64-355 34-328 (337)
343 3qye_A TBC1 domain family memb 20.3 4.7E+02 0.016 23.5 11.5 75 206-280 209-287 (331)
344 3ctd_A Putative ATPase, AAA fa 20.2 3.8E+02 0.013 22.3 9.1 63 381-446 37-107 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-41 Score=352.55 Aligned_cols=472 Identities=7% Similarity=-0.056 Sum_probs=358.9
Q ss_pred cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHH
Q 042098 64 DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHS 143 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 143 (566)
+.|.+..+...|+.++.+++..|+.++..+.+. |++++|+.+|++|.+ ..|+..++..++.+|.+.|++++|..+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQ-QQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHc-cCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 678888899999998888999999999999999 999999999999985 46788999999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-------------------ChhHHHHHHHHHHhcCChhHH
Q 042098 144 SVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER-------------------DLVSWNSMISGYSKMGYAKEA 204 (566)
Q Consensus 144 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a 204 (566)
.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88643 678899999999999999999999999965433 478999999999999999999
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHH--HH-HHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 205 VELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK--WV-EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
+++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999875322 3344444444333322221111 11 333333444444555556666666666677777776666
Q ss_pred CC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccc--
Q 042098 282 VN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIF-- 357 (566)
Q Consensus 282 ~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 357 (566)
.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+........
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 55 566666666666667777777777776666543 2245566666666666666666666666666443221111
Q ss_pred --------cCCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 042098 358 --------CGSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426 (566)
Q Consensus 358 --------~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~ 426 (566)
.|++++|.+.|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHc
Confidence 567777777776553 4578899999999999999999999999999875 45789999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHHhcCCH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-------KVD--EIVLGALLGACQKQKNT 497 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~ 497 (566)
|++++|.++|+++.+. . +.+..+|..++.+|.+.|++++|+++|+++.. .|+ ..+|..++.+|.+.|++
T Consensus 455 g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL-F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp TCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999875 2 33578999999999999999999999998843 466 78999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
++|.+.++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+....
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999886543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-37 Score=321.29 Aligned_cols=443 Identities=10% Similarity=0.003 Sum_probs=378.9
Q ss_pred CChHHHHHhh----cCCCchhHHHHhhcCC--CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 042098 54 KPNFLLIRII----DLKDFNYASLLFHQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFI 127 (566)
Q Consensus 54 ~~~~~~~~l~----~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 127 (566)
++...++.++ +.|++++|..+|+++. .|+..++..++.+|.+. |++++|+.+|+.+... +++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHc-CcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 5566666666 7899999999999984 47888999999999999 9999999999998653 678899999999
Q ss_pred HHHccCChhHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-ChhHHH
Q 042098 128 SCANLLALNHGVSVHSSVFKI---------------GLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--R-DLVSWN 189 (566)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~ 189 (566)
++.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.++|+++.+ | +...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853211 2233578999999999999999999999999864 3 223333
Q ss_pred H--------------------------------------HHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhc
Q 042098 190 S--------------------------------------MISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCG 231 (566)
Q Consensus 190 ~--------------------------------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 231 (566)
. ++..|.+.|++++|.++|+++.+. +++..++..++..+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 2 345566788899999999998764 578899999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHH
Q 042098 232 DLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIML 308 (566)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 308 (566)
+.|++++|..+++.+.+.++. +..++..++.++.+.|++++|..+++.+.+ .+..+|+.++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999987754 667788999999999999999999998843 4677899999999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH
Q 042098 309 FNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF 388 (566)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 388 (566)
|+++.+.. +.+..++..++.++.+.|++++|..+++.+.+.+. .+..+|+.++.+|.+
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---------------------GTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---------------------TCSHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------------cchHHHHHHHHHHHH
Confidence 99998752 33567899999999999999988888888776542 367899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcC
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF---GLIPK--SEHYSCMVDLYARAG 463 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g 463 (566)
.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|
T Consensus 454 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999864 4578999999999999999999999999997652 55777 679999999999999
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 464 HLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 464 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
++++|++.++++.. ..+..+|..+..+|.+.|++++|.+.++++++.+|+++..+..++.+|..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999864 24789999999999999999999999999999999999999999887753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.1e-26 Score=223.56 Aligned_cols=372 Identities=12% Similarity=0.075 Sum_probs=250.5
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDS 172 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 172 (566)
+.+. |++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...|.+.|++++
T Consensus 9 ~~~~-g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQA-GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3444 56666666665555432 1123333444444455556666665555555542 3344455555555555555555
Q ss_pred HHHHHhccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 042098 173 ARKVFDEIRE--R-DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 173 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 249 (566)
|+..|+++.+ | +..+|..+..++.+.|++++|++.|+++.+ .
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~ 130 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----------------------------------Y 130 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----------------------------------H
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------------h
Confidence 5555555432 2 233455555555555555555555555544 3
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042098 250 KMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIG 326 (566)
Q Consensus 250 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 326 (566)
.+. +...+..+...+...|++++|.+.|+++.+ | +..+|+.+...+.+.|++++|+..|+++.+.+ +.+...+..
T Consensus 131 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 131 NPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp CTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 322 222334455555555666666655555522 2 34566666666666777777777777666642 123445555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 042098 327 VLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEG 406 (566)
Q Consensus 327 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 406 (566)
+...+...|++++|...+....+... .+..++..+..++...|++++|...|+++.+.+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSP---------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666666666666655554332 256788899999999999999999999999864
Q ss_pred CCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 042098 407 GAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 407 ~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
+.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|++.++++... .+..++
T Consensus 268 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 268 ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp ---SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345778999999999999999999999999875 2345788999999999999999999999998764 457789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
..+..++.+.|++++|...++++++..|+++..+..++.++...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999888764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.6e-29 Score=246.96 Aligned_cols=213 Identities=13% Similarity=0.148 Sum_probs=110.6
Q ss_pred HHHHHHHhHHCCCCCCH-HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 042098 204 AVELFGRMREEEFLPDE-ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMV 282 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (566)
+..+.+++++++..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444555555554433 245666666666666666666666666666666666667777666665542110
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHH
Q 042098 283 NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSID 362 (566)
Q Consensus 283 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 362 (566)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|..+++.|.+.|+.
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--------- 137 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--------- 137 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC---------
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------
Confidence 112234445555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
||..+|+++|.+|++.|++++|.++|++|.+.| +.||..||+.||.+|++.|+.++|.+++++|.+.
T Consensus 138 -----------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G--~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 138 -----------PRLRSYGPALFGFCRKGDADKAYEVDAHMVESE--VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp -----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------CccceehHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 345555555555555555555555555555555 5555555555555555555555555555555554
Q ss_pred cCCCCChhHHHHHHHHHHh
Q 042098 443 FGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 443 ~~~~p~~~~~~~l~~~~~~ 461 (566)
+..|+..||+.++..|+.
T Consensus 205 -g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 205 -VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -TSSBCHHHHHHHHHHHHS
T ss_pred -CCCcCHHHHHHHHHHHhc
Confidence 555555555555555543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.4e-29 Score=246.29 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=173.1
Q ss_pred cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---------hhHHHHHHHHHHHhCCCCc
Q 042098 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA---------LNHGVSVHSSVFKIGLDED 153 (566)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~ 153 (566)
...++.+|.+|++. |++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 34688899999999 9999999999999999999999999999999987654 6789999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 154 DHVSHSLITMYARCGKLDSARKVFDEIRE----RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999974 79999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (566)
|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.1e-25 Score=216.48 Aligned_cols=355 Identities=12% Similarity=0.039 Sum_probs=272.6
Q ss_pred HHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhH
Q 042098 127 ISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKE 203 (566)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 203 (566)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34445566666666666655542 22333444444555555555555555544332 233445555555555555555
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 042098 204 AVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283 (566)
Q Consensus 204 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 283 (566)
|++.|+++ .+..+. +...+..+..++.+.|++++|.+.|+++.+
T Consensus 86 A~~~~~~a-----------------------------------l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHA-----------------------------------LRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHH-----------------------------------HHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------------HHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554 443322 234567788888888999999888888743
Q ss_pred --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCC
Q 042098 284 --K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGS 360 (566)
Q Consensus 284 --~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (566)
| +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+...
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------- 200 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-------- 200 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------
Confidence 4 44567788888999999999999999998863 23467888888999999999999988888877543
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 361 IDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
.+...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.
T Consensus 201 -------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 201 -------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp -------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 257789999999999999999999999998854 3357889999999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 441 SSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 441 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
+. .|+ ..++..+..++.+.|++++|++.++++.. +.+..++..+...+.+.|++++|...++++++..|++..+
T Consensus 265 ~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 265 EL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 64 454 67899999999999999999999998865 3578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+..++.+|.+.|++++|.+.++++.+...
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999987543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-24 Score=218.06 Aligned_cols=429 Identities=11% Similarity=-0.020 Sum_probs=285.6
Q ss_pred hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 042098 85 AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMY 164 (566)
Q Consensus 85 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 164 (566)
.|......+.+. |++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRN-KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHT-SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445555667777 88888888888887754 677777778888888888888888888887764 34556777777888
Q ss_pred HhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHH
Q 042098 165 ARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKW 241 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 241 (566)
.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888887776643 23333333333333332222333322222211111111111100000000011111111
Q ss_pred HHHHHHHhCC---------CchHHHHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-ChhHHHHH
Q 042098 242 VEGFVVKNKM---------DLNFYMGSALIDMYGK---CGALVPARRVFDAMVN----------------K-DVVTWNAM 292 (566)
Q Consensus 242 ~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 292 (566)
+...+..... +.+...+..+...+.. .|++++|...|+++.+ | +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111000 1123333334444443 7888888888777643 1 24467777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 372 (566)
...+...|++++|...++++.+.+ |+...+..+...+...|+++.|...++.+.+...
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------- 301 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-------------------- 301 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--------------------
Confidence 888888899999999998888764 3366777778888888888888877777665432
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhH
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEH 451 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~ 451 (566)
.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .| +...
T Consensus 302 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 374 (514)
T 2gw1_A 302 -NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEV 374 (514)
T ss_dssp -TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHH
T ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHH
Confidence 256678888889999999999999999988764 335677888888888999999999999988865 33 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQK---QKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
+..+...|.+.|++++|.+.++++... ++ ...+..+...+.. .|++++|...++++++..|.++.++..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 888889999999999999988887542 22 3378888888888 899999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++.+|...|++++|.+.++++.+...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998887654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.5e-21 Score=195.08 Aligned_cols=346 Identities=12% Similarity=-0.015 Sum_probs=234.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
+...+..+...+.+.|++++|+.+|+.+.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344455555555555555555555555432 244455555555555555555555555554432 1123334444444
Q ss_pred hcCCCCchhHHHHHHHHHHhCCCchH---HHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMDLNF---YMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 306 (566)
+...|++++|...++.+.+..+. +. ..+..++..+... .+..+...+.+.|++++|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444333221 11 2222222221100 1122244577888999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 042098 307 MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISAL 386 (566)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 386 (566)
..|+++.+.. +.+...+..+..++...|++++|..+++.+.+... .+..+|..+...|
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN---------------------DNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---------------------SCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHH
Confidence 9999887753 33567778888888888888888888877766432 3678899999999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH------------HHHHhhhCcHHHHHHHHHHhHHhcCCCCC-----h
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGV------------LSACVHAGLVDEGRRLFDLMSSSFGLIPK-----S 449 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~ 449 (566)
...|++++|+..|+++.... +.+...+..+ ...|...|++++|...|+.+.+. .|+ .
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~ 295 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTV 295 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHH
Confidence 99999999999999998754 2334444444 77899999999999999999875 455 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH-----
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS----- 522 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~----- 522 (566)
..+..+..++.+.|++++|+..++++.. +.+...|..+..+|...|++++|...++++++..|.++.++..++
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 4788899999999999999999999764 346889999999999999999999999999999999999999998
Q ss_pred -------HHHHhCC-----ChHHHHHHHHH-HHhCCCc
Q 042098 523 -------KIFANLK-----MWDDSAKMRAL-MREKGVS 547 (566)
Q Consensus 523 -------~~~~~~g-----~~~~A~~~~~~-~~~~g~~ 547 (566)
..|...| +.+++.+.+++ ..+..+.
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 4455566 66777888876 4444333
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3e-22 Score=205.13 Aligned_cols=425 Identities=11% Similarity=0.055 Sum_probs=310.1
Q ss_pred cchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042098 83 EYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLIT 162 (566)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 162 (566)
...|..+...+.+. |++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA-KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHT-TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34567777788888 99999999999998864 3467788888888899999999999999998875 446778888889
Q ss_pred HHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHhcCCCCc
Q 042098 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREE------EFLPDEITLVSVLGSCGDLGDL 236 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~ 236 (566)
.+...|++++|...|+.+ ..+....+..+..+...+...+|...++++... ...|+.......+. ..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcCh
Confidence 999999999999999744 323333333455566666677888888887542 23344444433332 2222
Q ss_pred hhHHHHHHHHHHhCCCch-HHHHHHHHHHHH--------hcCCHHHHHHHHhcCCC--CC--------hhHHHHHHHHHH
Q 042098 237 VLGKWVEGFVVKNKMDLN-FYMGSALIDMYG--------KCGALVPARRVFDAMVN--KD--------VVTWNAMITAYA 297 (566)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~--------~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~ 297 (566)
+.+...+.... ...+. ......+...+. ..|++++|..+|+.+.+ |+ ..++..+...+.
T Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 22211111100 00111 112222222222 23578899999988854 32 224666777888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
..|++++|...+++..+. .|+...+..+...+...|+++.|...+..+.+... .+..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------~~~~ 311 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP---------------------EYPP 311 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---------------------TCHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---------------------CCHH
Confidence 999999999999999885 46677888888889999999999988888776543 2577
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 456 (566)
+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .|+ ...+..+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 385 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFA 385 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHH
Confidence 89999999999999999999999998864 334678888999999999999999999999876 344 67888999
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCchhH
Q 042098 457 DLYARAGHLSEAWDFVERMPEK--------VDEIVLGALLGACQKQ----------KNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
..+...|++++|++.++++... .....+......+... |++++|...++++++..|.++.++
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999987541 1222244445667777 999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
..++.+|...|++++|.+.++++.+...
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999887654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.5e-22 Score=200.87 Aligned_cols=435 Identities=8% Similarity=-0.069 Sum_probs=303.3
Q ss_pred HHHhhcCCCchhHHHHhhcCC--CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 042098 59 LIRIIDLKDFNYASLLFHQIS--RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALN 136 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 136 (566)
...+.+.|++++|...|+++. .|+...|..+..++.+. |++++|+..++++.+.+ +.+..++..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 445558999999999999983 48889999999999999 99999999999999874 336678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 042098 137 HGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE----RDLVSWNSMISGYSKMGYAKEAVELFGRMR 212 (566)
Q Consensus 137 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 212 (566)
+|...|+.+.+.+. ++......++..+........+.+.+..+.. ++...++.-...............+...+.
T Consensus 91 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 99999999998763 4444445555555443333333333322211 111111110001111111111111111111
Q ss_pred HCCCC--------CC-HHHHHHHHHHhc---CCCCchhHHHHHHHHHH-----h--CC------CchHHHHHHHHHHHHh
Q 042098 213 EEEFL--------PD-EITLVSVLGSCG---DLGDLVLGKWVEGFVVK-----N--KM------DLNFYMGSALIDMYGK 267 (566)
Q Consensus 213 ~~~~~--------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~li~~~~~ 267 (566)
..... |+ ...+......+. ..|+++.|...++.+.+ . .+ +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 11110 22 223333333222 36778888888777776 2 11 2234566777888888
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHH
Q 042098 268 CGALVPARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDK 345 (566)
Q Consensus 268 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 345 (566)
.|++++|...|+++.+ |+...+..+...+...|++++|+..++++.... +.+...+..+...+...|+++.|...++
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887632 346677778888888888888888888887753 2345667777777888888888887777
Q ss_pred HHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh
Q 042098 346 YASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH 425 (566)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~ 425 (566)
.+.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 329 ~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 329 KAKELDPE---------------------NIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHTCSS---------------------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHH
T ss_pred HHHHhChh---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHH
Confidence 77664322 46678888999999999999999999998764 3456788888999999
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYAR---AGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN 496 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 496 (566)
.|++++|...++.+.+...-.++ ...+..+...+.. .|++++|.+.++++.. ..+...+..+...+...|+
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 99999999999998765222222 3388899999999 9999999999998754 2467788889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+++|...++++++..|.++..+..+
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999988877765
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=9.7e-21 Score=189.24 Aligned_cols=376 Identities=12% Similarity=0.020 Sum_probs=215.6
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
+...|..+...+.+. |++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 344556666666666 66666666666666542 2345556666666666666666666666666653 22344555555
Q ss_pred HHHHhcCCHHHHHHHHhccCCC---Ch---hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCC
Q 042098 162 TMYARCGKLDSARKVFDEIRER---DL---VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGD 235 (566)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 235 (566)
..|.+.|++++|...|+.+.+. +. ..+..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 5555556666655555555432 12 3344333321000 01111222344455
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 042098 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRM 312 (566)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (566)
+++|...++.+.+..+. +..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555544322 344455666666666666666666666532 35667777777777888888888888777
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCCh
Q 042098 313 KYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRA 392 (566)
Q Consensus 313 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 392 (566)
... .|+.......+.... ....+..+...+...|++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~g~~ 273 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVK------------------------------------------KLNKLIESAEELIRDGRY 273 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHH------------------------------------------HHHHHHHHHHHHHHHTCH
T ss_pred HHh--CCChHHHHHHHHHHH------------------------------------------HHHHHHHHHHHHHHcCCH
Confidence 653 344333222211110 011233446677777788
Q ss_pred HHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 042098 393 HEALLLFERMSKEGGAARPN-----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 393 ~~A~~~~~~m~~~g~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 466 (566)
++|...|+++.+.. |+ ...+..+...+.+.|++++|...++.+.+. .| +...+..+..+|...|+++
T Consensus 274 ~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 274 TDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHH
Confidence 88888887777643 43 345666777777778888888888777654 34 3667777777788888888
Q ss_pred HHHHHHHhCCCC-CC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHhhCCCCc----------h
Q 042098 467 EAWDFVERMPEK-VD-EIVLGALLGA------------CQKQK-----NTDVSQRVMQL-LLEIESSNS----------G 516 (566)
Q Consensus 467 ~A~~~~~~~~~~-~~-~~~~~~l~~~------------~~~~~-----~~~~A~~~~~~-~~~~~p~~~----------~ 516 (566)
+|...++++... |+ ...+..+..+ |...| +.+++.+.+++ +++..|++. .
T Consensus 347 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~ 426 (450)
T 2y4t_A 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEK 426 (450)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 888877776542 43 3444444422 33333 56777888886 666666542 2
Q ss_pred hHHHHHHHHHhCCChHHHH
Q 042098 517 NYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~ 535 (566)
.+..+..+|...++.+++.
T Consensus 427 ~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 427 KFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHhCCHHHHH
Confidence 4555666666666655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=6.2e-20 Score=187.86 Aligned_cols=428 Identities=10% Similarity=-0.024 Sum_probs=304.3
Q ss_pred HHHhhcCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCh
Q 042098 59 LIRIIDLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLAL 135 (566)
Q Consensus 59 ~~~l~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 135 (566)
...+.+.|++++|...|+.+. +.+...|..+...+.+. |++++|++.|+++.+.+ +.+..++..+..++...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 445558999999999999873 35678899999999999 99999999999998875 33677888899999999999
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC------ChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 136 NHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRER------DLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 136 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
++|...++.+ . ..|+. ....+..+...+....|...++.+... ........+..+....+.+.+...+.
T Consensus 110 ~~A~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVL-S--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHH-h--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 9999999633 2 22322 222344555566677888888887652 11122344445556666666555544
Q ss_pred HhHHCCCCCCHHHHH-HHHHHhcCC--------CCchhHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcCCHHHH
Q 042098 210 RMREEEFLPDEITLV-SVLGSCGDL--------GDLVLGKWVEGFVVKNKMDLN------FYMGSALIDMYGKCGALVPA 274 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~-~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A 274 (566)
.... ..+....+. .+...+... |++++|..+++.+.+..+... ..++..+...+...|++++|
T Consensus 185 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 3322 222222222 222222222 367777777777776655432 22466677788888888888
Q ss_pred HHHHhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 042098 275 RRVFDAMV--NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 275 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 352 (566)
...|+... .|+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|+++.|...++.+.+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 88888873 3556677788888888889999999988887753 23466777777888888888888888777776542
Q ss_pred CCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHH
Q 042098 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEG 432 (566)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A 432 (566)
. +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 342 ~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 342 E---------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp T---------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred C---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHH
Confidence 2 46678899999999999999999999998864 34567888889999999999999
Q ss_pred HHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 042098 433 RRLFDLMSSSFGLIPK----SEHYSCMVDLYARA----------GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN 496 (566)
Q Consensus 433 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 496 (566)
...++.+.+...-.++ ...+..+...+.+. |++++|+..+++... +.+...+..+...+...|+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 9999998765211111 22345556778888 999999999998764 2467888899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHH
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
+++|.+.++++++..|.++.....
T Consensus 478 ~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999988766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=9.6e-18 Score=161.81 Aligned_cols=312 Identities=12% Similarity=0.010 Sum_probs=217.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (566)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34566777777888888888888888876642 223555555666666666666666666666555432 2344455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 042098 264 MYGKCGALVPARRVFDAMVNKDV------VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL 337 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 337 (566)
++...|++++|...|+...+.++ ..+..+..... ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 55555555555555555433111 11111110000 00011123445555666
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI 417 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~ 417 (566)
+.|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++.
T Consensus 137 ~~A~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 192 (359)
T 3ieg_A 137 TAAITFLDKILEVCV---------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHH
T ss_pred HHHHHHHHHHHHhCC---------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 666555555544332 367789999999999999999999999999864 45778899
Q ss_pred HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhCCCC-CCH--
Q 042098 418 GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS------------CMVDLYARAGHLSEAWDFVERMPEK-VDE-- 481 (566)
Q Consensus 418 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-- 481 (566)
.+...+...|++++|...++...+. .|+ ...+. .+...+.+.|++++|.+.++++... |+.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 9999999999999999999999875 444 33322 2367789999999999999987652 442
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 482 ---IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 482 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+..+..++...|++++|...++++++..|+++.++..++.+|...|++++|.+.++++.+....
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 234557789999999999999999999999999999999999999999999999999999887543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=6.2e-18 Score=163.14 Aligned_cols=328 Identities=12% Similarity=-0.007 Sum_probs=242.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGS 229 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 229 (566)
++..+..+...+...|++++|...|+.+.+ .+..++..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456778888999999999999999998764 467789999999999999999999999998742 2256788889999
Q ss_pred hcCCCCchhHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 042098 230 CGDLGDLVLGKWVEGFVVKNKMD--LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIM 307 (566)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 307 (566)
+...|++++|...+..+.+..+. .+...+..+...+. ...+..+...+...|++++|+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999887651 13333333321111 0122334445556666666666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 042098 308 LFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALA 387 (566)
Q Consensus 308 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 387 (566)
.++++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...+.
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------------------SDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHH
Confidence 666665542 2234455555555666666665555555544432 125667888888999
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCCHHHHH------------HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-----h
Q 042098 388 FNGRAHEALLLFERMSKEGGAARPNDVTFI------------GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-----E 450 (566)
Q Consensus 388 ~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~ 450 (566)
..|++++|...+++..+.. +.+...+. .+...+...|++++|...++.+.+. .|+. .
T Consensus 200 ~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 273 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVR 273 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHH
Confidence 9999999999999988754 22333332 2255688899999999999999876 3442 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+..++...|++++|++.+++... . .+...|..+...+...|++++|...++++++.+|+++..+..+..+....
T Consensus 274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 355678899999999999999998865 2 46788999999999999999999999999999999999988887776543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.7e-18 Score=164.36 Aligned_cols=354 Identities=10% Similarity=0.037 Sum_probs=166.2
Q ss_pred HHHhh-cCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH
Q 042098 59 LIRII-DLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137 (566)
Q Consensus 59 ~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 137 (566)
.+.|+ +.|++++|.+++++++.| .+|+.+..++.+. |++++|++.|.+. +|..+|..++.++...|++++
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~-g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHc-CCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 34455 789999999999999665 4999999999999 9999999999753 588899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC
Q 042098 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 217 (566)
|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 99988887774 4567889999999999999999998886 478889999999999999999999999977
Q ss_pred CCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 042098 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYA 297 (566)
Q Consensus 218 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 297 (566)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 47899999999999999999999988 378899999999999999999988877765 45555557889999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC--C--
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP--V-- 373 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~-- 373 (566)
+.|++++|+.+++...... +-....|+-+-.++++-. + +++.+..+.|..-. +
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p---------------------~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P---------------------QKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H---------------------HHHHHHHHHHSTTSCHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-H---------------------HHHHHHHHHHHHHhcCcHH
Confidence 9999999999999887654 344555666655555432 1 23333344443322 1
Q ss_pred ----CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh
Q 042098 374 ----TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 374 ----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
.+...|..+...|...++++.|.. .|.+. +|+...-..+.....+..+.+--.+...-.... .|
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h----~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p-- 343 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP-- 343 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC----ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--
Confidence 246679999999999999998876 44443 233322233333444444444333333322322 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
...+.|+.++...=+...+.++|++...
T Consensus 344 ~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 344 LLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 3466677777666677777777766554
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.5e-16 Score=160.40 Aligned_cols=366 Identities=9% Similarity=-0.015 Sum_probs=241.5
Q ss_pred CcccHHHHHHHHHc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHH
Q 042098 118 DNFTYPFVFISCAN----LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYAR----CGKLDSARKVFDEIRE-RDLVSW 188 (566)
Q Consensus 118 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~ 188 (566)
++..+..+...+.. .+++++|...|+...+.| ++..+..|...|.. .++.++|...|+...+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44444455555544 556666666666665543 34455555555655 5666666666665543 244555
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcC----CCCchhHHHHHHHHHHhCCCchHHHHHH
Q 042098 189 NSMISGYSK----MGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGD----LGDLVLGKWVEGFVVKNKMDLNFYMGSA 260 (566)
Q Consensus 189 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (566)
..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555655 566666666666665544 33444444444443 556667777776666654 3445556
Q ss_pred HHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 261 LIDMYGK----CGALVPARRVFDAMVN-KDVVTWNAMITAYAQ----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 261 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
|...|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|..+|++..+.| +...+..+-..+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6666665 6777777777776533 355566666666665 677777777777776653 233333333333
Q ss_pred hc----cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc-----CChHHHHHHHHHH
Q 042098 332 AS----IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN-----GRAHEALLLFERM 402 (566)
Q Consensus 332 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m 402 (566)
.. .++.++|...++...+. .+...+..+...|... +++++|+.+|++.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~-----------------------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQ-----------------------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTT-----------------------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 33 44444444444444332 2455677777777777 8999999999999
Q ss_pred HhCCCCCCCCHHHHHHHHHHHhhhC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 042098 403 SKEGGAARPNDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERM 475 (566)
Q Consensus 403 ~~~g~~~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 475 (566)
.+.| +...+..+...|...| +.++|.+.|++..+. .++..+..|...|.. .+++++|++.|++.
T Consensus 323 ~~~~-----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 323 AEQG-----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHTT-----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HhcC-----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8876 3456666777776655 789999999988864 357788888899988 89999999999998
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 042098 476 PEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFAN 527 (566)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 527 (566)
.+..+...+..+...|.. .++.++|...|+++.+.+|+ ++.....++.++..
T Consensus 394 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 394 AEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 777778888889988888 89999999999999999844 67677777665553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.5e-17 Score=156.95 Aligned_cols=291 Identities=11% Similarity=-0.050 Sum_probs=186.8
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (566)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++.+.+..+. +..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 44455566666666677777777666665432 112333334444445555555555555555544322 2233344444
Q ss_pred HHHhcC-CHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHH
Q 042098 264 MYGKCG-ALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKW 342 (566)
Q Consensus 264 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 342 (566)
.+...| ++++|... |++..+.. +.+...+..+...+...|++++|..
T Consensus 99 ~~~~~~~~~~~A~~~-------------------------------~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 99 YYLMVGHKNEHARRY-------------------------------LSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHHHSCSCHHHHHHH-------------------------------HHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhhhhHHHHHHH-------------------------------HHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 444444 44444444 44444332 1122333444444444444444444
Q ss_pred HHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 042098 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSA 422 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~ 422 (566)
.+..+.+... .+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 147 ~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~ 202 (330)
T 3hym_B 147 AYFTAAQLMK---------------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVV 202 (330)
T ss_dssp HHHHHHHHTT---------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHH
T ss_pred HHHHHHHhcc---------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 4443333221 134456667888888999999999999988764 4557788888888
Q ss_pred HhhhCcHHHHHHHHHHhHHhcCC-------CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 042098 423 CVHAGLVDEGRRLFDLMSSSFGL-------IPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQK 493 (566)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 493 (566)
+...|++++|...+++..+...- .....++..+..+|...|++++|++.+++... ..+...+..+...+..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 99999999999999888764211 22356888899999999999999999988754 2456788888899999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhCCChH
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIF-ANLKMWD 532 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 532 (566)
.|++++|.+.++++++..|+++..+..++.++ ...|+.+
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999888 4555543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.5e-17 Score=157.00 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=221.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444556777888888999999999888743 245567778888999999999999999998853 2355677778888
Q ss_pred HhccC-ChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 042098 331 CASIG-ALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA 409 (566)
Q Consensus 331 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 409 (566)
+...| +++.|...+....+... .+...|..+...+...|++++|...++++.+..
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 155 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEK---------------------TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--- 155 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCT---------------------TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---
T ss_pred HHHhhhhHHHHHHHHHHHHHhCC---------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---
Confidence 88888 88888888777765432 356789999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE----------- 477 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 477 (566)
+.+...+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|+..+++...
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 232 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence 334567777889999999999999999999854 454 67889999999999999999999987653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
......+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++++.+...
T Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 233578899999999999999999999999999999999999999999999999999999998876543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.5e-15 Score=153.15 Aligned_cols=362 Identities=11% Similarity=0.026 Sum_probs=290.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CChhHHHHHHHHHHh----cCChhHHHHHHH
Q 042098 139 VSVHSSVFKIGLDEDDHVSHSLITMYAR----CGKLDSARKVFDEIRE-RDLVSWNSMISGYSK----MGYAKEAVELFG 209 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 209 (566)
...++...+. .++..+..+...|.. .+++++|...|+...+ .+...+..|...|.. .+++++|++.|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4444444443 366777777888887 8999999999987754 467788888889998 899999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcC----CCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Q 042098 210 RMREEEFLPDEITLVSVLGSCGD----LGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGK----CGALVPARRVFDAM 281 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 281 (566)
+..+.| +...+..+...+.. .+++++|...++...+.+ +...+..|...|.. .++.++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998765 45566666666666 789999999999998876 44556778888877 78999999999987
Q ss_pred CC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCChhHHHHHHHHHHHhCC
Q 042098 282 VN-KDVVTWNAMITAYAQ----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS----IGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 282 ~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 352 (566)
.+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 44 467788888888888 899999999999998865 44555555555543 55556665555554443
Q ss_pred CCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh--
Q 042098 353 RHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-- 426 (566)
Q Consensus 353 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~-- 426 (566)
.+...+..+...|.. .+++++|+.+|++..+.| +...+..+...+...
T Consensus 253 ---------------------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 253 ---------------------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-----NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp ---------------------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHCBT
T ss_pred ---------------------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCC
Confidence 356677778888888 899999999999998766 455666777777776
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 042098 427 ---GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG---HLSEAWDFVERMPEKVDEIVLGALLGACQK----QKN 496 (566)
Q Consensus 427 ---g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 496 (566)
++.++|...+++..+. + +...+..+...|...| ++++|++.|++..+..+...+..+...+.. .++
T Consensus 307 g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 8999999999998875 3 4567778888888766 889999999998877888899999999998 899
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 042098 497 TDVSQRVMQLLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 546 (566)
.++|...++++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 383 ~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999998854 57899999999998 8999999999999998874
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.5e-15 Score=154.61 Aligned_cols=409 Identities=11% Similarity=0.055 Sum_probs=264.4
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLI 161 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 161 (566)
+...|..++. +.+. |++++|..+|+.+.+. .+-+...|...+..+.+.|+++.|..+|+.++... |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~-~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQN-QPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHS-SCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHh-CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 5667777777 4666 8888888888888765 23355567777777778888888888888877653 5666666666
Q ss_pred HHH-HhcCCHHHHHH----HHhccC-----C-CChhHHHHHHHHHHh---------cCChhHHHHHHHHhHHCCCCCCHH
Q 042098 162 TMY-ARCGKLDSARK----VFDEIR-----E-RDLVSWNSMISGYSK---------MGYAKEAVELFGRMREEEFLPDEI 221 (566)
Q Consensus 162 ~~~-~~~~~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~ 221 (566)
... ...|+.+.|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 33466655544 554432 1 245566666665544 567777777777776521111112
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc-------CC------CCC---
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA-------MV------NKD--- 285 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~~--- 285 (566)
.|..........|. .+...++. .+.+++..|..++.. +. .|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22211111000000 00011111 123445556554443 11 111
Q ss_pred -----hhHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-------cCChh-------
Q 042098 286 -----VVTWNAMITAYAQN----GLS----NEAIMLFNRMKYAGVNPDKITLIGVLSACAS-------IGALD------- 338 (566)
Q Consensus 286 -----~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~------- 338 (566)
...|...+...... ++. ..+..+|++..... +-+...|......+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23555555333222 222 47778888887752 2345566655555553 57765
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-H-HHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-D-VTF 416 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~-~t~ 416 (566)
+|..+++...+. ..+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|
T Consensus 304 ~A~~~~~~Al~~--------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 359 (530)
T 2ooe_A 304 EAANIYERAIST--------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHTTT--------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----SSSCHHHHH
T ss_pred HHHHHHHHHHHH--------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----cccCchHHH
Confidence 555555544431 01236788999999999999999999999999985 354 3 578
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDL-YARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQ 492 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~ 492 (566)
..++..+.+.|+.++|..+|++..+. .|+ ...|...+.. +...|++++|..+|++.... | +...|..++..+.
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 88888888999999999999998854 343 3333332222 34689999999999987653 4 5788999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch----hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSG----NYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+.|+.++|..+|++++...|.++. .|..++......|+.+.+.++.+++.+.-
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998776655 78888889999999999999999887643
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.4e-17 Score=161.43 Aligned_cols=241 Identities=12% Similarity=-0.028 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 332 (566)
.++..+..++...|++++|...|+++.+ .+..++..+...+...|++++|+..++++.... |+........
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~---- 172 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA---- 172 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH----
Confidence 3445556666666666666666665522 355677777788888888888888888887753 3221110000
Q ss_pred ccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC
Q 042098 333 SIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN 412 (566)
Q Consensus 333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~ 412 (566)
+..... . .....+..+... ...|++++|...++++.+..+ ..++
T Consensus 173 --~~~~~~-------------------------------~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p-~~~~ 216 (368)
T 1fch_A 173 --EEGAGG-------------------------------A-GLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDP-TSID 216 (368)
T ss_dssp -----------------------------------------------CTTHHH-HHHHHHHHHHHHHHHHHHHST-TSCC
T ss_pred --HHHhhh-------------------------------h-cccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCc-Cccc
Confidence 000000 0 000111222233 378999999999999998651 1115
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
..++..+...+...|++++|...++++... .|+ ..++..+...+.+.|++++|+..++++.. +.+...+..+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 293 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 888999999999999999999999999875 444 67899999999999999999999998764 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSN-----------SGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
++.+.|++++|...++++++..|.+ ..+|..++.+|...|++++|..++++.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999999998887 789999999999999999999987643
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=4.4e-17 Score=151.55 Aligned_cols=242 Identities=12% Similarity=0.018 Sum_probs=173.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCCh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITL-IGVLSACASIGAL 337 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~ 337 (566)
..+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+...+ ..+...+...|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 446677888888888888776654456667777888888888888888888888887666654443 3333555665444
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHH-
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTF- 416 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~- 416 (566)
+ +|.+.|+. +.+...+..++..|.+.|++++|.+.|+++.+.. |+....
T Consensus 118 ~------------------------~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~ 167 (291)
T 3mkr_A 118 D------------------------AALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD----EDATLTQ 167 (291)
T ss_dssp H------------------------HHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred H------------------------HHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCcHHHH
Confidence 4 44444444 3567788888899999999999999999998754 554221
Q ss_pred --HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 042098 417 --IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQ 492 (566)
Q Consensus 417 --~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 492 (566)
..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++... +.+..++..++..+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 12233344568899999999998876 234577888888899999999999999888654 246777888888888
Q ss_pred hcCCHHH-HHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 493 KQKNTDV-SQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 493 ~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
..|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 8888765 5788899999999887544 34444555555443
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=3.3e-14 Score=150.46 Aligned_cols=409 Identities=12% Similarity=0.102 Sum_probs=264.1
Q ss_pred hHHHHHhhcCCCchhHHHHhhcCC-CC-----CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 56 NFLLIRIIDLKDFNYASLLFHQIS-RP-----NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 56 ~~~~~~l~~~g~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
+.+..+++..|.+.+|+++++++. +| +....|.++.+..+. +..+..+..+..... + ...+...+
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 345555557777777777777763 22 234455566555554 445555555554421 1 23355666
Q ss_pred HccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 042098 130 ANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFG 209 (566)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (566)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77888888888887741 11222233322 5677888888887664 46678888888888888888888886
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH
Q 042098 210 RMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTW 289 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (566)
+. -|...|..++.+|.+.|+++++.+++....+...++.. .+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 53 36677788888888888888888888887776533333 345888888888888655443 34566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHc
Q 042098 290 NAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369 (566)
Q Consensus 290 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 369 (566)
..+...|...|++++|..+|... ..|..+..++.+.|+++.|...++..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---------------------- 1247 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---------------------- 1247 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----------------------
Confidence 77888888888888888888874 36788888888887777776666544
Q ss_pred cCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-
Q 042098 370 DMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK- 448 (566)
Q Consensus 370 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 448 (566)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+++++... ++.+.
T Consensus 1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH 1313 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAAL---GLERAH 1313 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhH
Confidence 24566777777777777777776655432 2344556677777777777777777776554 33433
Q ss_pred hhHHHHHHHHHHhc--CCHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------
Q 042098 449 SEHYSCMVDLYARA--GHLSEAWDFVERMPEK-------VDEIVLGALLGACQKQKNTDVSQRVMQLLLE---------- 509 (566)
Q Consensus 449 ~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------- 509 (566)
...|.-|..+|++. ++..++++.|..-..- -+...|.-+...|.+.|+++.|....-+-..
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~ 1393 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 1393 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH
Confidence 34555555555543 3555666665544332 2355677777777777777777622211111
Q ss_pred --hCCCCchhHHHHHHHHHhCC---------------ChHHHHHHHH
Q 042098 510 --IESSNSGNYVISSKIFANLK---------------MWDDSAKMRA 539 (566)
Q Consensus 510 --~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 539 (566)
..+.|+..|...+..|...+ +++++.+++.
T Consensus 1394 ~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1394 IITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 13556666666666666655 6666666665
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=5.9e-15 Score=150.33 Aligned_cols=384 Identities=10% Similarity=0.012 Sum_probs=230.3
Q ss_pred CcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHH
Q 042098 118 DNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGY 195 (566)
Q Consensus 118 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~ 195 (566)
|...|..++. +.+.|+++.|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4556666666 35567777777777777654 234555666777777777777777777776654 5555555555322
Q ss_pred -HhcCChhHHHH----HHHHhHH-CCCCCC-HHHHHHHHHHhcC---------CCCchhHHHHHHHHHHhCCCchHHHHH
Q 042098 196 -SKMGYAKEAVE----LFGRMRE-EEFLPD-EITLVSVLGSCGD---------LGDLVLGKWVEGFVVKNKMDLNFYMGS 259 (566)
Q Consensus 196 -~~~~~~~~a~~----~~~~m~~-~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (566)
...|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+..++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455555544 4444432 233332 3334333333222 344455555555444411111111121
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH------HCC---CCCCH--------h
Q 042098 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK------YAG---VNPDK--------I 322 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~g---~~p~~--------~ 322 (566)
.........|. ..+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00111110 12345666776666532 111 23331 1
Q ss_pred HHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC---CCChhHHHHHHHHHHH-------
Q 042098 323 TLIGVLSACAS----IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP---VTNEVSWNAMISALAF------- 388 (566)
Q Consensus 323 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~------- 388 (566)
.|...+..... .++.. .....+...|++.. +.+...|..++..+.+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~--------------------~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQT--------------------LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSH--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccCCcch--------------------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 22222211110 01110 00123333444333 3467788888888876
Q ss_pred cCChH-------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHH
Q 042098 389 NGRAH-------EALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--EHYSCMVDLY 459 (566)
Q Consensus 389 ~~~~~-------~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~ 459 (566)
.|+++ +|..+|++..+.- .+-+...+..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFA 366 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHH
Confidence 79987 8999999998631 2345778888899999999999999999999864 5652 4788899999
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 460 ARAGHLSEAWDFVERMPEKV--DEIVLGALLGA-CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
.+.|++++|.++|++....| +...|...... +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|+.
T Consensus 367 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 99999999999999987642 22333322222 3368999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 042098 537 MRALMREKGV 546 (566)
Q Consensus 537 ~~~~~~~~g~ 546 (566)
+++++...+.
T Consensus 447 ~~~~al~~~~ 456 (530)
T 2ooe_A 447 LFERVLTSGS 456 (530)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccC
Confidence 9999998754
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.2e-16 Score=151.67 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=130.0
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 042098 133 LALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMR 212 (566)
Q Consensus 133 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 212 (566)
|++++|.++++++ +++.+|..|..++.+.|++++|++.|... +|..+|..++.++...|++++|+..++..+
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4455555555544 12235555555555555555555555332 344455555555555555555555444333
Q ss_pred HCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH
Q 042098 213 EEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAM 292 (566)
Q Consensus 213 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 292 (566)
+. .+++.+.+.++.+|.+.|+++++..++. .|+..+|..+...|...|.+++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 31 2334445555555555555555554442 234445555666666666666666666655 246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCC
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMP 372 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 372 (566)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.... . .+.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~-------l-----------------~L~ 204 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG-------L-----------------HIV 204 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT-------T-----------------TTT
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH-------H-----------------HHH
Confidence 66666666666666666655 14556666666666665555552211 1 111
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh--hCcHHHHHHHHHHhHHhcCCCC---
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH--AGLVDEGRRLFDLMSSSFGLIP--- 447 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~p--- 447 (566)
..+.....++..|.+.|++++|..+++...... +-....|+-|..++++ .++..+.++.|. ++..++|
T Consensus 205 -~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~ 277 (449)
T 1b89_A 205 -VHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLR 277 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHH
T ss_pred -hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHH
Confidence 123334467888999999999999999987643 3445666666666655 344555555443 3324555
Q ss_pred ---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 448 ---KSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 448 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
+...|..++..|...++++.|....-+-+. .-+...| .....+..+.+---+...-.++..|. ....|..
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f---~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~ 351 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF---KDIITKVANVELYYRAIQFYLEFKPL---LLNDLLM 351 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHH---HHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHH---HHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence 367888999999999999998886655542 1223332 33344445544444444444433332 3334444
Q ss_pred HHHhCCChHHHHHHH
Q 042098 524 IFANLKMWDDSAKMR 538 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~ 538 (566)
++...=+...+.+++
T Consensus 352 ~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 352 VLSPRLDHTRAVNYF 366 (449)
T ss_dssp HHGGGCCHHHHHHHH
T ss_pred HHHhccCcHHHHHHH
Confidence 443333333333333
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=4.5e-14 Score=149.44 Aligned_cols=418 Identities=11% Similarity=0.067 Sum_probs=291.9
Q ss_pred HHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcC------CCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCC
Q 042098 41 QQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQI------SRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLG 114 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g 114 (566)
+..-+.+.++ .|..+|..++...+ +-=+.+.++. ...++.--...+.+|... |.+.+|+++|++..-.+
T Consensus 941 k~~arylv~r---~d~~lW~~vl~~~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a-glp~EaieLLEKivl~~ 1015 (1630)
T 1xi4_A 941 KSLSRYLVRR---KDPELWGSVLLESN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA-DLPNELIELLEKIVLDN 1015 (1630)
T ss_pred HHHHHHHHHh---cCHHHHHHHhcCCc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC-CCHHHHHHHHHHHHcCC
Confidence 4444555544 67778888884333 1222344432 223444556677788888 99999999999987432
Q ss_pred C--CCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHH
Q 042098 115 L--KPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMI 192 (566)
Q Consensus 115 ~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 192 (566)
- .-+...-+.++....+. +.....++.+.... .....+...+...|.+++|..+|++.. ......+.++
T Consensus 1016 s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLi 1086 (1630)
T 1xi4_A 1016 SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD-VNTSAVQVLI 1086 (1630)
T ss_pred CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 1 11234445566555555 55666665555431 113346777788899999999998875 2222333333
Q ss_pred HHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHH
Q 042098 193 SGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALV 272 (566)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 272 (566)
. ..+++++|.++.++. -+..+|..+..++...|++++|...|... -+...|..++.++.+.|+++
T Consensus 1087 e---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A 1087 E---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 1151 (1630)
T ss_pred H---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHH
Confidence 3 667888888888865 23677888888888889999888888553 35566677888899999999
Q ss_pred HHHHHHhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 042098 273 PARRVFDAMVN--KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQR 350 (566)
Q Consensus 273 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 350 (566)
+|.+.|....+ +++...+.++.+|++.+++++..... . .++...+..+-..|...|++++|..++..+
T Consensus 1152 EAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1152 ELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99888876533 33334445888888888887544332 2 345566667777777777776666666542
Q ss_pred CCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH
Q 042098 351 GLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD 430 (566)
Q Consensus 351 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~ 430 (566)
..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|...|++.
T Consensus 1222 --------------------------~ny~rLA~tLvkLge~q~AIEaarKA--------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1222 --------------------------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred --------------------------hHHHHHHHHHHHhCCHHHHHHHHHHh--------CCHHHHHHHHHHHhhhhHHH
Confidence 36999999999999999999999876 25578998999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 042098 431 EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ--KNTDVSQRVMQL 506 (566)
Q Consensus 431 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~--~~~~~A~~~~~~ 506 (566)
.|...... +..++..+..++..|.+.|.+++|+.+++....- .....|.-+...+.+. ++..++.++|..
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99987653 3446677889999999999999999999887643 3344565555555553 566666666665
Q ss_pred HHhhCC-----CCchhHHHHHHHHHhCCChHHHHHH
Q 042098 507 LLEIES-----SNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 507 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
-....| .+...|..++-.|.+.|+|+.|...
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 555444 5778899999999999999999954
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.5e-15 Score=152.43 Aligned_cols=303 Identities=11% Similarity=-0.024 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHhHHCCCCCC-HHHHHHHHHH---hcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH----HhcCC
Q 042098 199 GYAKEAVELFGRMREEEFLPD-EITLVSVLGS---CGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY----GKCGA 270 (566)
Q Consensus 199 ~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 270 (566)
+++++|++.|++..+ +.|+ ...+..+... +...++.++|...+...++..+. +..++..+...+ ...|+
T Consensus 152 ~~y~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALE--KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhH
Confidence 346666666666655 2333 2222222222 33445556666666666655443 222333333322 23456
Q ss_pred HHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHH
Q 042098 271 LVPARRVFDAMV---NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKY 346 (566)
Q Consensus 271 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 346 (566)
+++|.+.+++.. ..+...+..+...|...|++++|+..+++..+. .|+ ..++..+..++...+....
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~------- 299 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVM------- 299 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhh-------
Confidence 667777776652 235556777777888888888888888887764 343 2333333322221100000
Q ss_pred HHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 042098 347 ASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426 (566)
Q Consensus 347 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~ 426 (566)
.. ............+.++.|...+++..+.. +.+..++..+...+...
T Consensus 300 --~~---------------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 300 --NL---------------------------RENGMYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALA 347 (472)
T ss_dssp --HC---------------------------------CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHT
T ss_pred --hH---------------------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHh
Confidence 00 00000011111223567777777777653 23345666777778888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPKS--EHYSCMVD-LYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQR 502 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (566)
|++++|...|++..+. ...+.. ..+..+.. .+...|++++|+..|++... .|+..... +....+.+
T Consensus 348 ~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~ 417 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQK 417 (472)
T ss_dssp TCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHH
Confidence 8888888888877754 222221 12333332 23467888888888877643 24433222 22345567
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 042098 503 VMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPGCSWI 555 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 555 (566)
++++.++.+|.++.+|..++.+|...|++++|.+.++++.+.|...+...+|+
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 78888889999999999999999999999999999999999888777666665
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.6e-16 Score=151.32 Aligned_cols=235 Identities=10% Similarity=-0.028 Sum_probs=190.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHH
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A 364 (566)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------ 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP------------ 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------------
Confidence 44568888888899999999999999988753 33567788888888888888888888877776542
Q ss_pred HHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-----------HHHHHHHHHHhhhCcHHHHH
Q 042098 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-----------VTFIGVLSACVHAGLVDEGR 433 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-----------~t~~~ll~~~~~~g~~~~A~ 433 (566)
.+..+|..+..+|...|++++|...++++.+.. |+. ..+..+...+...|++++|.
T Consensus 131 ---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 131 ---------NNLKALMALAVSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 257789999999999999999999999998753 432 23344577888999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
..++++.+...-.++..++..+...|...|++++|++.+++... +.+..+|..+..++...|++++|...++++++..
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999997622222578899999999999999999999998765 2467889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998643
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.4e-16 Score=151.52 Aligned_cols=269 Identities=10% Similarity=-0.050 Sum_probs=187.9
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 042098 221 ITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYA 297 (566)
Q Consensus 221 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 297 (566)
..+..+...+...|++++|...++.+.+..+. +..++..+..++...|++++|...|++..+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555666666666666666666666665443 344556666666666666666666665522 23455666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
..|++++|+..|+++.+. .|+.......+. ....
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~--------------------------------------------~~~~ 178 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKK--------------------------------------------GSPG 178 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-----------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhc--------------------------------------------cchH
Confidence 666666666666666552 122110000000 0133
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMV 456 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~ 456 (566)
.+..+...+...|++++|...++++.+..+ ..++..++..+...+...|++++|...++++.+. .| +..++..+.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 254 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLG 254 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 456678889999999999999999998651 1126889999999999999999999999999875 44 478899999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHH
Q 042098 457 DLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------------NSGNYVISS 522 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~l~ 522 (566)
.+|.+.|++++|+..|+++.. . .+...+..+..++...|++++|...++++++..|. +..++..++
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 999999999999999998765 2 45788999999999999999999999999998776 467899999
Q ss_pred HHHHhCCChHHHHHHHHH
Q 042098 523 KIFANLKMWDDSAKMRAL 540 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~ 540 (566)
.++...|+.+.+.++.++
T Consensus 335 ~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 999999999999887754
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.2e-15 Score=147.76 Aligned_cols=255 Identities=11% Similarity=-0.025 Sum_probs=200.9
Q ss_pred HHhcCCHHHHHH-HHhcCCC--C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 042098 265 YGKCGALVPARR-VFDAMVN--K-----DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGA 336 (566)
Q Consensus 265 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 336 (566)
+...|++++|.. .|++... + +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8886533 1 34568888899999999999999999998864 3456678888888899999
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-HH
Q 042098 337 LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-VT 415 (566)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-~t 415 (566)
++.|...++.+.+... .+..++..+...|...|++++|...++++.+.. |+. ..
T Consensus 114 ~~~A~~~~~~al~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 168 (368)
T 1fch_A 114 ELLAISALRRCLELKP---------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT----PAYAHL 168 (368)
T ss_dssp HHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----TTTGGG
T ss_pred HHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCcHHH
Confidence 9888888887776542 367789999999999999999999999999864 332 22
Q ss_pred HHH---------------HHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 042098 416 FIG---------------VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--K 478 (566)
Q Consensus 416 ~~~---------------ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 478 (566)
+.. .+..+...|++++|...++++.+...-.++..++..+...|.+.|++++|+..++++.. +
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 211 23444489999999999999987622112477899999999999999999999998764 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.+...|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999999999999999999999999999999998653
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=4.6e-16 Score=147.94 Aligned_cols=270 Identities=11% Similarity=-0.049 Sum_probs=188.8
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHH
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN---KDVVTWNAMITAYAQ 298 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 298 (566)
.+..+...+...|++++|..+++.+.+..+. +...+..+..++...|++++|...++++.+ .+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666665433 344455566666666666666666665522 244455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh
Q 042098 299 NGLSNEAIMLFNRMKYAGVNPDKI-TLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV 377 (566)
Q Consensus 299 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 377 (566)
.|++++|+..++++.+.. |+.. .+..+...+ |+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------------~~~~ 137 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD------------------------------------------VDID 137 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH------------------------------------------HHHH
Confidence 666666666666665532 2211 111110000 0111
Q ss_pred HHHHH-HH-HHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 042098 378 SWNAM-IS-ALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSC 454 (566)
Q Consensus 378 ~~~~l-i~-~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 454 (566)
....+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 211 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNK 211 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 11122 22 3667889999999999998864 446788999999999999999999999999875 34 4678899
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------------NSGNYVI 520 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~ 520 (566)
+...+...|++++|++.++++.. +.+...+..+...+...|++++|.+.++++++..|. ++..+..
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence 99999999999999999998764 245788899999999999999999999999999998 7889999
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 042098 521 SSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
++.++...|++++|..++++..
T Consensus 292 l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 292 FRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999986543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=7.8e-15 Score=136.32 Aligned_cols=245 Identities=10% Similarity=-0.018 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHhccCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHH
Q 042098 165 ARCGKLDSARKVFDEIRERDL----VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGK 240 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 240 (566)
...|++..|+..++.....++ ...-.+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345666666666655544321 23334455666666666666544321 3344455555566666666666666
Q ss_pred HHHHHHHHhCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 042098 241 WVEGFVVKNKMDL-NFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP 319 (566)
Q Consensus 241 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 319 (566)
..++.+...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|...|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 6666666554333 334456677888899999999999998 4577888899999999999999999999998863 5
Q ss_pred CHhHHH---HHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHH
Q 042098 320 DKITLI---GVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 320 ~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
+..... ..+..+...|++++|..+++.+.+.. +.+...++.+..++.+.|++++|.
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------------------p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------------------SPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---------------------CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 532111 11122223344444444444444331 124555555555666666666666
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHH-HHHHHHHhHH
Q 042098 397 LLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDE-GRRLFDLMSS 441 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~~~~ 441 (566)
..|++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 221 ~~l~~al~~~---p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 221 GVLQEALDKD---SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6666655542 2244455555555555555543 3455555553
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=4.2e-15 Score=141.22 Aligned_cols=278 Identities=10% Similarity=-0.100 Sum_probs=211.0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 042098 184 DLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALID 263 (566)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 263 (566)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 34457778889999999999999999998753 336778888889999999999999999999988654 5667888999
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HhccCChh
Q 042098 264 MYGKCGALVPARRVFDAMVNK---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA--CASIGALD 338 (566)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~ 338 (566)
.+...|++++|.+.++++.+. +...+..+... .|+......+... +...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 999999999999999987432 22222222110 0111111122122 45555566
Q ss_pred HHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHH
Q 042098 339 LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIG 418 (566)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ 418 (566)
+|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++..
T Consensus 156 ~A~~~~~~~~~~~~---------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 211 (327)
T 3cv0_A 156 ECRTLLHAALEMNP---------------------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---PDDAQLWNK 211 (327)
T ss_dssp HHHHHHHHHHHHST---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHhhCC---------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCcHHHHHH
Confidence 66655555554332 257789999999999999999999999998864 446788999
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-------------CHHH
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-------------DEIV 483 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------------~~~~ 483 (566)
+...+...|++++|...++++.+. .| +...+..+...|.+.|++++|.+.++++... | +...
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 999999999999999999999875 34 4778899999999999999999999987542 3 3678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
|..+..++...|+.++|..+++++++..|
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999999988766544
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.2e-17 Score=167.00 Aligned_cols=149 Identities=16% Similarity=0.071 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKY---AGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
.+||++|.+||+.|++++|.++|++|.+ .|+.||..||+++|.+|++.|++++|..+++.|...|+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~---------- 197 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT---------- 197 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----------
Confidence 4677777777777777777777766543 466777777777777777777777777777777777766
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
||+.+||++|.++|+.|+. ++|.++|++|.+.| +.||..||++++.++.+. ..++..+++..
T Consensus 198 ----------PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG--~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P- 260 (1134)
T 3spa_A 198 ----------PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG--LKLQALFTAVLLSEEDRA----TVLKAVHKVKP- 260 (1134)
T ss_dssp ----------CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT--CCSHHHHHHSCCCHHHHH----HHHHHHGGGCC-
T ss_pred ----------CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CCCChhhcccccChhhHH----HHHHHHHHhCc-
Confidence 5678888888888888874 78899999999999 999999999998766654 34444444432
Q ss_pred cCCCCC------hhHHHHHHHHHHhcC
Q 042098 443 FGLIPK------SEHYSCMVDLYARAG 463 (566)
Q Consensus 443 ~~~~p~------~~~~~~l~~~~~~~g 463 (566)
++.|+ ..+...|.+.|.+.+
T Consensus 261 -~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 261 -TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp -CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred -ccCCCCCCcccccchHHHHHHHccCC
Confidence 44444 445556667777655
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=166.46 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=111.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHH
Q 042098 152 EDDHVSHSLITMYARCGKLDSARKVFDEIR-------ERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLV 224 (566)
Q Consensus 152 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 224 (566)
.-..+||+||++|++.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345689999999999999999999997764 4899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 042098 225 SVLGSCGDLGDL-VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 225 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (566)
++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 999999999885 78899999999999999999999998877776544444444333
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.9e-14 Score=131.61 Aligned_cols=228 Identities=12% Similarity=0.015 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+....+...... .+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~------ 75 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---ADY------ 75 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCH------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc---cch------
Confidence 45555556666666666666666666554 4555566666666666666666655555444221100 000
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
+....+|..+...+...|++++|...+++..+.. |+. ..+...|++++|...++.+... .|
T Consensus 76 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~ 136 (258)
T 3uq3_A 76 -----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH----RTA-------DILTKLRNAEKELKKAEAEAYV---NP 136 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHHHHHHHHHHC---CH
T ss_pred -----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----chh-------HHHHHHhHHHHHHHHHHHHHHc---Cc
Confidence 0014678889999999999999999999999854 664 3466778999999999998864 45
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 448 K-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 448 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
+ ...+..+...+...|++++|++.+++... ..+...|..+..++...|++++|...++++++..|+++..+..++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4 67888999999999999999999998864 24678899999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhCC
Q 042098 525 FANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~g 545 (566)
+...|++++|.+.++++.+..
T Consensus 217 ~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 217 QIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987654
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=7.3e-14 Score=140.20 Aligned_cols=386 Identities=10% Similarity=-0.036 Sum_probs=230.1
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCChhHHHHHHHHHHHhC----
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRL-----G--LKP-DNFTYPFVFISCANLLALNHGVSVHSSVFKIG---- 149 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---- 149 (566)
....||.|...+... |++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLK-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 356789998899999 9999999999887542 1 122 34678889999999999999999998887631
Q ss_pred --CC-CchhHHHHHHHHHHhc--CCHHHHHHHHhccCC--C-ChhHHHHHHHH---HHhcCChhHHHHHHHHhHHCCCCC
Q 042098 150 --LD-EDDHVSHSLITMYARC--GKLDSARKVFDEIRE--R-DLVSWNSMISG---YSKMGYAKEAVELFGRMREEEFLP 218 (566)
Q Consensus 150 --~~-~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p 218 (566)
.. ....++..+..++... +++++|+..|++..+ | +...+..+..+ +...++.++|++.+++..+. .|
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 11 1244565555555544 578999999998764 3 44555555444 44568889999999988764 34
Q ss_pred -CHHHHHHHHHHh----cCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHH
Q 042098 219 -DEITLVSVLGSC----GDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWN 290 (566)
Q Consensus 219 -~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 290 (566)
+...+..+...+ ...++.++|...++......+. +..++..+...|...|++++|...+++..+ | +..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 344454444333 3457889999999998887655 455678899999999999999999998743 3 445666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
.+...|...+.... .... ..... .....+..+.|...++...+..
T Consensus 286 ~lg~~y~~~~~~~~---------~~~~-~~~~~------~~~~~~~~~~A~~~~~~a~~~~------------------- 330 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLRE-NGMYG------KRKLLELIGHAVAHLKKADEAN------------------- 330 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------C------HHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHhh---------hHHH-HHHHH------HHHHHhhHHHHHHHHHHHhhcC-------------------
Confidence 66555533211111 0000 00000 0001112233444444433322
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH--HHHHHHH-HHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV--TFIGVLS-ACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~--t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
+.+..++..+...|...|++++|+..|++..+.. ..|... .+..+.. .....|+.++|+..|++..+ +.|
T Consensus 331 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~ 403 (472)
T 4g1t_A 331 --DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE--LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQ 403 (472)
T ss_dssp --TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCC
T ss_pred --CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCc
Confidence 2345678889999999999999999999998864 222221 1222222 23467899999999998875 466
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+........ ..+.+++++... +.+..+|..+..++...|++++|++.|+++++.+|.+|.+...++
T Consensus 404 ~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 404 KSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 643322222 233334433322 356788999999999999999999999999999998887766554
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=1e-13 Score=137.53 Aligned_cols=375 Identities=9% Similarity=-0.010 Sum_probs=233.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhccCCCChhHHHHHHHHHHhcC--
Q 042098 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKL---DSARKVFDEIRERDLVSWNSMISGYSKMG-- 199 (566)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 199 (566)
+...+.+.|++++|.+.|+...+.| ++..+..|...|...|+. ++|...|+...+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445556677777777777776665 223333444555556666 77777777776655556666666455544
Q ss_pred ---ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC----
Q 042098 200 ---YAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDL---VLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG---- 269 (566)
Q Consensus 200 ---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 269 (566)
++++|+..|++..+.|... .+..+...|...+.. ..+...+....+.|. ......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 6678888888887765433 333444444333332 344555555555554 334456677777777
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc----CChhHHHH
Q 042098 270 ALVPARRVFDAMVNKDVVTWNAMITAYAQNG---LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASI----GALDLGKW 342 (566)
Q Consensus 270 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~ 342 (566)
+.+.+..+++.....++..+..+...|.+.| +.++|+..|++..+.|. ++...+..+-..|... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666777777777779999999999999 89999999999998873 3444334444455443 45555555
Q ss_pred HHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 042098 343 VDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISA-L--AFNGRAHEALLLFERMSKEGGAARPNDVTFIGV 419 (566)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~l 419 (566)
.++... +.+...+..+... + ...+++++|+.+|++..+.| +...+..|
T Consensus 239 ~~~~aa------------------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-----~~~A~~~L 289 (452)
T 3e4b_A 239 LLEKIA------------------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-----QPRAELLL 289 (452)
T ss_dssp HHHHHG------------------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHc------------------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHH
Confidence 554443 2355667777776 4 46889999999999998876 56666667
Q ss_pred HHHHhhhC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042098 420 LSACVHAG-----LVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERMPEKVDEIVLGALLGA 490 (566)
Q Consensus 420 l~~~~~~g-----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 490 (566)
...|. .| ++++|...|++.. .-++..+..|...|.. ..++++|...|++..+..+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 66666 55 9999999998775 2346677778877776 44999999999998877677777777777
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 491 CQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 491 ~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
|.. ..|.++|...++++.+.+++........+......++.++|.++.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 764 458999999999999877554333333323333445777888887776643
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=3.2e-14 Score=126.24 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh-----------CcHHHHHHHHHHhHHhc
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-----------GLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~ 443 (566)
+...+..+..++.+.|++++|+..+++..+.. +-+...+..+...+... |++++|...+++..+.
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~- 113 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV- 113 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-
Confidence 56677888888899999999999999998864 34567788888888888 9999999999999865
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
.|+ ...+..+..+|...|++++|+..|++.... .+...+..+..++...|++++|...++++++.+|+++..+..+
T Consensus 114 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 114 --NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 565 678889999999999999999999886431 6778889999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 042098 522 SKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+.++...|++++|.+.+++..
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999987653
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=8.6e-14 Score=128.57 Aligned_cols=219 Identities=11% Similarity=-0.074 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------- 108 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--------------- 108 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc---------------
Confidence 34444444444455555555444444432 11234444444444444444444444444443221
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
.+..++..+...|...|++++|...++++.+.. |+.......+..+...|++++|...++..... .++
T Consensus 109 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~ 176 (275)
T 1xnf_A 109 ------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDK 176 (275)
T ss_dssp ------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCC
T ss_pred ------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCc
Confidence 245678888999999999999999999999854 55555555556667789999999999888765 233
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+... ..++..+...++.++|++.+++.... |. ...+..+...+...|++++|...++++++.+|.+...+
T Consensus 177 ~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--- 252 (275)
T 1xnf_A 177 EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH--- 252 (275)
T ss_dssp CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---
T ss_pred chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---
Confidence 3334 44777888889999999999998765 32 57788899999999999999999999999999876544
Q ss_pred HHHHHhCCChHHHHHHH
Q 042098 522 SKIFANLKMWDDSAKMR 538 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~ 538 (566)
+.++...|++++|.+.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 66788889999998876
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=2.4e-12 Score=118.79 Aligned_cols=225 Identities=8% Similarity=-0.051 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCccccCCH
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS----IGALDLGKWVDKYASQRGLRHDIFCGSI 361 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (566)
..++..+...+...|++++|+..|++..+. -+...+..+-..+.. .+++++|...++...+.+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----------
Confidence 334444455555555555555555555542 122334444444444 444444444444443322
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHH
Q 042098 362 DDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGR 433 (566)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~ 433 (566)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.
T Consensus 73 -------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 73 -------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp -------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred -------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 34556677777777 888888888888887754 56677777777877 88888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042098 434 RLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQ 505 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 505 (566)
..+++..+. + +...+..+...|.. .+++++|++.|++..+..+...+..+...+.. .+++++|...++
T Consensus 135 ~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 135 EYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 888888765 3 45667777788877 88888888888887766667778888888888 889999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 042098 506 LLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 547 (566)
++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|..
T Consensus 211 ~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 211 KACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888765 6678888888888 88999999999888877653
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.5e-13 Score=122.32 Aligned_cols=232 Identities=10% Similarity=-0.082 Sum_probs=149.1
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----C----hhHHHH
Q 042098 222 TLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN--K----D----VVTWNA 291 (566)
Q Consensus 222 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 291 (566)
.+..+...+...|++++|...+..+.+.. .+..++..+..++...|++++|...++...+ | + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555554 3444555555555555555555555554422 1 0 234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccC
Q 042098 292 MITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDM 371 (566)
Q Consensus 292 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 371 (566)
+...+...|++++|+..|++.... .|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~--------------------------------------------------- 111 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRT--------------------------------------------------- 111 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCC---------------------------------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cch---------------------------------------------------
Confidence 444555555555555555544442 122
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhH
Q 042098 372 PVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451 (566)
Q Consensus 372 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 451 (566)
...+...|++++|...++++.... +.+...+..+...+...|++++|...++...+. . +.+..+
T Consensus 112 -----------~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~ 175 (258)
T 3uq3_A 112 -----------ADILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-A-PEDARG 175 (258)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHH
T ss_pred -----------hHHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-cccHHH
Confidence 123445567788888888887753 234556777777788888888888888888765 1 224667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE------SSNSGNYVISSK 523 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~ 523 (566)
+..+..+|.+.|++++|++.+++... +.+...|..+..++...|++++|...++++++.. |.+..++..+..
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 78888888888888888888887754 2457778888899999999999999999999888 777777666654
Q ss_pred H
Q 042098 524 I 524 (566)
Q Consensus 524 ~ 524 (566)
+
T Consensus 256 ~ 256 (258)
T 3uq3_A 256 A 256 (258)
T ss_dssp T
T ss_pred h
Confidence 3
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=6.5e-13 Score=122.48 Aligned_cols=244 Identities=11% Similarity=-0.033 Sum_probs=165.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhc
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPD--KITLIGVLSACAS 333 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 333 (566)
......+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+.+-.|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3455566677777777777776522 2 344667777777777777777777777776332222 1235566666677
Q ss_pred cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH
Q 042098 334 IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND 413 (566)
Q Consensus 334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~ 413 (566)
.|++++|...++...+... .+..+|..+...|...|++++|...+++..+.. +.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~ 142 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDT---------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDP 142 (272)
T ss_dssp TTCHHHHHHHHHHHHHHST---------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCH
T ss_pred cccHHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcH
Confidence 7777766666666655432 245678888888899999999999998887753 3345
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC-----
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGH---LSEAWDFVERMPE----KVD----- 480 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~----- 480 (566)
..+..+...+...+++++|...|+.+.+. .|+ ...+..+..++...|+ +++|...+++... .|+
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 56666663444556899999999888865 454 5677777888887777 7777777766543 133
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 481 -EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 481 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
...|..+...+...|++++|.+.++++++.+|+++.+...+..+....+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 2567778888888999999999999999999999888888776655443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=9.6e-13 Score=119.79 Aligned_cols=168 Identities=10% Similarity=0.020 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++... +..|+ ...+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 145 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFE 145 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHH
Confidence 45567777888888888888888888887764 346677778888888888888888888887752 34554 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+...|...|++++|.+.+++.... .+...+..+...+...|++++|...++++.+..|.+...+..++.++...|++
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 7888888888888888888876542 35677788888888888899999888888888888888888888888888999
Q ss_pred HHHHHHHHHHHhCCC
Q 042098 532 DDSAKMRALMREKGV 546 (566)
Q Consensus 532 ~~A~~~~~~~~~~g~ 546 (566)
++|.++++++.+...
T Consensus 226 ~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 226 DTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCC
Confidence 999888888877644
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=4.2e-12 Score=115.51 Aligned_cols=206 Identities=11% Similarity=0.009 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------- 102 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--------------- 102 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---------------
Confidence 44455555555666666666666555432 22344455555555555555555555555444321
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
.+...+..+...|...|++++|..+++++.+.+ ..| +...+..+...+...|++++|...++++.+. .
T Consensus 103 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~ 171 (252)
T 2ho1_A 103 ------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT--LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---N 171 (252)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred ------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C
Confidence 246678888899999999999999999998733 334 5667888888999999999999999998875 3
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 447 P-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 447 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
| +...+..+...|...|++++|...++++... .+...+..+...+...|+.++|.+.++++.+..|+++.....
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4 4778889999999999999999999987653 466778888899999999999999999999999998776544
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.8e-12 Score=128.52 Aligned_cols=346 Identities=10% Similarity=0.020 Sum_probs=231.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-CChhHHHHHHHHHHhcCCh---hHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC-
Q 042098 160 LITMYARCGKLDSARKVFDEIRE-RDLVSWNSMISGYSKMGYA---KEAVELFGRMREEEFLPDEITLVSVLGSCGDLG- 234 (566)
Q Consensus 160 li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~- 234 (566)
+...+.+.|++++|+++|+...+ .+..++..+...|...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 56677888999999999988765 3555666666677777888 8999999988754 4444444555333333
Q ss_pred ----CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHH---HHHHHhcCC-CCChhHHHHHHHHHHHcCCHHHHH
Q 042098 235 ----DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVP---ARRVFDAMV-NKDVVTWNAMITAYAQNGLSNEAI 306 (566)
Q Consensus 235 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 306 (566)
+.++|...++...+.|... .+..|...|...+..++ +.+.+.... ..++..+..+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 7789999999999877543 44567777776655433 344444332 235677888888888888666555
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccC---ChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHH
Q 042098 307 MLFNRMKYAGVNPDKITLIGVLSACASIG---ALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMI 383 (566)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 383 (566)
.....+...-...+...+..+-..+...| +.++|...++...+.|.. +...+..+.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~---------------------~a~~~~~Lg 220 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV---------------------TAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS---------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH---------------------HHHHHHHHH
Confidence 54333332222233346777777777788 788888888777776643 444456677
Q ss_pred HHHHHc----CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-H--hhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 384 SALAFN----GRAHEALLLFERMSKEGGAARPNDVTFIGVLSA-C--VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 384 ~~~~~~----~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
..|... +++++|+.+|++.. .| +...+..|... + ...+++++|...|++..+. | +...+..|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg 290 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLG 290 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHH
Confidence 777554 78999999999998 55 33444445444 3 4589999999999998865 4 567777888
Q ss_pred HHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 457 DLYARAG-----HLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 457 ~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
..|. .| ++++|++.|++.. ..+...+..|...|.. ..|.++|...|+++.+. .++.....|+.+|..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHS
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHh
Confidence 8887 55 9999999999999 7788888888877776 34999999999999874 566788899999885
Q ss_pred ----CCChHHHHHHHHHHHhCCCc
Q 042098 528 ----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 528 ----~g~~~~A~~~~~~~~~~g~~ 547 (566)
.++.++|...+++..+.|..
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCH
Confidence 56999999999999888764
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.6e-12 Score=114.45 Aligned_cols=166 Identities=10% Similarity=-0.036 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh-CcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
...+..+...+...|++++|...++++.+.. +.+..++..+...+... |++++|...++.+.+. +..|+ ...+.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ 117 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANL 117 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHH
Confidence 4456666667777777777777777776653 33556667777777777 7777777777777652 23343 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCchhHHHHHHHHHhCCC
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES-SNSGNYVISSKIFANLKM 530 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~ 530 (566)
.+...+...|++++|++.++++... .+...+..+...+...|++++|...++++++..| .++..+..++.++...|+
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 7777777777777777777766532 3466677777777777888888888888877777 777777777777778888
Q ss_pred hHHHHHHHHHHHhCC
Q 042098 531 WDDSAKMRALMREKG 545 (566)
Q Consensus 531 ~~~A~~~~~~~~~~g 545 (566)
.++|..+++.+.+..
T Consensus 198 ~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 198 AQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 888887777776543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=6.5e-12 Score=115.81 Aligned_cols=225 Identities=9% Similarity=-0.086 Sum_probs=170.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVNK-DVVTWNAMITAYAQ----NGLSNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
.+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+-..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 4455566666667777777776665443 44556666666777 777777777777777654 455566666666
Q ss_pred hc----cCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 042098 332 AS----IGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAF----NGRAHEALLLFERMS 403 (566)
Q Consensus 332 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~ 403 (566)
.. .++.++|...++...+.+ +..++..+...|.. .+++++|+..|++..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK-----------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC-----------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 66 666666666666555432 45678888888888 999999999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 042098 404 KEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGHLSEAWDFVERM 475 (566)
Q Consensus 404 ~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 475 (566)
+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+...|.. .+++++|++.+++.
T Consensus 142 ~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 142 DLN-----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hcC-----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 865 45667777777877 89999999999998865 3 46778888999999 99999999999988
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCch
Q 042098 476 PEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.+..+...+..+...+.. .++.++|.+.++++.+.+|++..
T Consensus 213 ~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 213 CELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 766567888888899998 99999999999999999887543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=5.2e-13 Score=120.75 Aligned_cols=144 Identities=12% Similarity=0.025 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 165 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQF 165 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 3445555555666666666666666665542 234455555555566666666666666665543 11224455555
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
...+.+.|++++|++.++++... .+..++..+..++...|++++|...++++++..|+++..+..+..+
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555556666665555554321 2344555555555556666666666666666556555555544433
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2e-12 Score=111.45 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=148.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+...|..+...|...|++++|+..|++..+.. +-+..++..+...+...|++++|...++..... .|+ ...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHH
Confidence 56789999999999999999999999999864 346778889999999999999999999998865 444 66778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+...+...+++++|.+.+.+... +.+...+..+...+.+.|++++|++.++++++.+|.++.++..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 888999999999999999988754 246778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 042098 532 DDSAKMRALMREKGV 546 (566)
Q Consensus 532 ~~A~~~~~~~~~~g~ 546 (566)
++|.+.++++.+...
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999987654
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1.3e-11 Score=109.88 Aligned_cols=207 Identities=9% Similarity=0.005 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++.|...++.+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------- 73 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--------------- 73 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---------------
Confidence 34444444445555555555555444431 11233444444444445444444444444433221
Q ss_pred HccCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFN-GRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (566)
.+..++..+...+... |++++|...++++.+.+ ..|+ ...+..+...+...|++++|...++++.+.
T Consensus 74 ------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 142 (225)
T 2vq2_A 74 ------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADP--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--- 142 (225)
T ss_dssp ------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 2455677788888899 99999999999988732 3343 567788888899999999999999988865
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 446 IPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK---VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 446 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
.|+ ...+..+...+.+.|++++|.+.++++... .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 143 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 344 678888999999999999999999887642 3566677777888899999999999999999999988766554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=7.4e-13 Score=119.72 Aligned_cols=168 Identities=10% Similarity=0.127 Sum_probs=148.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. . +.+...+..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~ 130 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-G-MENGDLFYM 130 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CCSHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHH
Confidence 45567788888999999999999999998864 346788888999999999999999999999875 2 335778889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
+...+.+.|++++|++.++++... .+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|+++
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 999999999999999999987642 467788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 042098 533 DSAKMRALMREKGVS 547 (566)
Q Consensus 533 ~A~~~~~~~~~~g~~ 547 (566)
+|.+.++++.+....
T Consensus 211 ~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 211 KALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCcc
Confidence 999999999876543
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.7e-12 Score=117.36 Aligned_cols=237 Identities=9% Similarity=-0.051 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHH
Q 042098 287 VTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALK 366 (566)
Q Consensus 287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~ 366 (566)
..+......+...|++++|+..|++..+... .+...+..+..++...|++++|...+....+.+..++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK----------- 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh-----------
Confidence 3455567788999999999999999988632 2344777788899999999999998888877332211
Q ss_pred HHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 367 VFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 367 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
.....|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+. .
T Consensus 72 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~ 138 (272)
T 3u4t_A 72 -------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---T 138 (272)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---S
T ss_pred -------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---C
Confidence 124468899999999999999999999999864 345678999999999999999999999988753 5
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC---
Q 042098 447 PK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGALLGACQKQKN---TDVSQRVMQLLLEIE---SSN--- 514 (566)
Q Consensus 447 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~--- 514 (566)
|+ ...+..+...+...+++++|++.|+++... | +...+..+..++...|+ .++|...++++++.. |+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 55 567777773444556999999999988652 4 46777778888888888 888999999999875 442
Q ss_pred --chhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 515 --SGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 515 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
..+|..++.+|...|++++|.+.++++.+.....
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 2578889999999999999999999998876543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1e-12 Score=129.24 Aligned_cols=235 Identities=10% Similarity=-0.008 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMVN---------KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVL 328 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 328 (566)
+..+...|...|++++|...+++..+ ....++..+...|...|++++|+..+++..+...
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------- 157 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLAR----------- 157 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------
Confidence 34455555555555555555554421 1233566666777777777777777776654200
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCC-----------------
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR----------------- 391 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----------------- 391 (566)
..++.. ....++..+...|...|+
T Consensus 158 ----~~~~~~-----------------------------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 158 ----QLGDRL-----------------------------------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp ----HHTCHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ----HhhchH-----------------------------------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 000000 013346666677777777
Q ss_pred hHHHHHHHHHHHhC----CCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcC
Q 042098 392 AHEALLLFERMSKE----GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAG 463 (566)
Q Consensus 392 ~~~A~~~~~~m~~~----g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 463 (566)
+++|+..+++..+. +. ......++..+...+...|++++|...+++..+...-.++ ..++..+...|...|
T Consensus 199 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 77787777775442 10 1112346777778888899999999999888764211112 237788888999999
Q ss_pred CHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CchhHHHHHHHHHhCC
Q 042098 464 HLSEAWDFVERMPEK--------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------NSGNYVISSKIFANLK 529 (566)
Q Consensus 464 ~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g 529 (566)
++++|++.+++.... ....++..+...+...|++++|...++++++..+. ...++..++.+|...|
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 999999988876542 12467778888999999999999999999887433 2458888999999999
Q ss_pred ChHHHHHHHHHHHh
Q 042098 530 MWDDSAKMRALMRE 543 (566)
Q Consensus 530 ~~~~A~~~~~~~~~ 543 (566)
++++|.+.+++..+
T Consensus 358 ~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 358 GHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998854
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.5e-12 Score=120.07 Aligned_cols=222 Identities=12% Similarity=-0.039 Sum_probs=179.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC
Q 042098 298 QNGLSNEAIMLFNRMKYAGVNP---DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT 374 (566)
Q Consensus 298 ~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 374 (566)
..|++++|+..++++.+..... +...+..+...+...|++++|...++.+.+... .
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---------------------~ 75 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---------------------D 75 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------------C
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---------------------C
Confidence 3578999999999998863211 345677788888999999999888888777543 3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSC 454 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 454 (566)
+..+|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .|+......
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~ 149 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSL 149 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHH
Confidence 67889999999999999999999999999864 345788899999999999999999999999875 566555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS----NSGNYVISSKIFANLK 529 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 529 (566)
....+...|++++|...+++.... |+......++..+...++.++|...++++.+..|. ++..+..++.+|...|
T Consensus 150 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 150 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence 556667789999999999766532 33333344777788889999999999999877653 4688999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 042098 530 MWDDSAKMRALMREKGV 546 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~g~ 546 (566)
++++|.+.++++.+...
T Consensus 230 ~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 230 DLDSATALFKLAVANNV 246 (275)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 99999999999988754
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=8.4e-12 Score=119.87 Aligned_cols=245 Identities=7% Similarity=0.010 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042098 256 YMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGL-SNEAIMLFNRMKYAGVNPDKITLIGVLSAC 331 (566)
Q Consensus 256 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (566)
.++..+...+...|++++|+..+++..+ | +...|+.+...+...|+ +++|+..|++..... +-+...|..+-.++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3455666667777777777777777633 2 45677777777777785 888888888877753 12455666666777
Q ss_pred hccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC
Q 042098 332 ASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP 411 (566)
Q Consensus 332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p 411 (566)
...|++++|...++.+.+... .+..+|..+..++...|++++|+..++++++.. +-
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP---------------------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~ 232 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA---------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VR 232 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TT
T ss_pred HHccCHHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC
Confidence 777777777777776666543 267789999999999999999999999999864 34
Q ss_pred CHHHHHHHHHHHhh-hCcHHHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCC-CCH
Q 042098 412 NDVTFIGVLSACVH-AGLVDEG-----RRLFDLMSSSFGLIPK-SEHYSCMVDLYARAG--HLSEAWDFVERMPEK-VDE 481 (566)
Q Consensus 412 ~~~t~~~ll~~~~~-~g~~~~A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~~~ 481 (566)
+...|+.+..++.. .|..++| +..+++.... .|+ ...|..+..++...| ++++|++.+.++... .+.
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~ 309 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSP 309 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCH
Confidence 57788888888888 5665666 5778887764 565 678888888888888 689999999888333 456
Q ss_pred HHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhhCCCCchhHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQK---------NTDVSQRVMQLL-LEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 482 ~~~~~l~~~~~~~~---------~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 528 (566)
..+..+...+.+.| ..++|.++++++ .+.+|.....|..++..+...
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 67788888888764 258999999999 899999998888887766543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.8e-12 Score=127.07 Aligned_cols=58 Identities=16% Similarity=0.002 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVN-----K----DVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
++..+...+...|++++|...+++... . ...++..+...+...|++++|+..+++..+
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555666666555554311 1 133566666777777777777777776654
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=1.2e-12 Score=124.41 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhC----CCCCCCCHHHHHHHHHHHhhhCcHHHHH
Q 042098 378 SWNAMISALAFNGR--------------------AHEALLLFERMSKE----GGAARPNDVTFIGVLSACVHAGLVDEGR 433 (566)
Q Consensus 378 ~~~~li~~~~~~~~--------------------~~~A~~~~~~m~~~----g~~~~p~~~t~~~ll~~~~~~g~~~~A~ 433 (566)
++..+...+...|+ +++|...+++.... +. ......++..+...+...|++++|.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45556666666666 77777777765432 10 1112346777788888999999999
Q ss_pred HHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHH
Q 042098 434 RLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 434 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~ 501 (566)
..+++..+...-.++ ..++..+...+...|++++|.+.+++.... ++ ..++..+...+...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999888754211122 337788889999999999999999876531 12 556778889999999999999
Q ss_pred HHHHHHHhhCCCC------chhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 502 RVMQLLLEIESSN------SGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 502 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
..++++++..|.. ..++..++.+|...|++++|.+.++++.+..
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999998875432 4478889999999999999999999988753
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=1.2e-12 Score=128.40 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=183.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHhcCCCCchhHHHHHHHHHHh----CCCc-hHHHH
Q 042098 188 WNSMISGYSKMGYAKEAVELFGRMREEEFLPD----EITLVSVLGSCGDLGDLVLGKWVEGFVVKN----KMDL-NFYMG 258 (566)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 258 (566)
+......+...|++++|+..|++..+.+.. + ...+..+...+...|+++.|...++...+. +..+ ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 333444445555555555555554442111 1 123444444455555555555555543332 1111 23355
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVN-----KD----VVTWNAMITAYAQNGL--------------------SNEAIMLF 309 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~ 309 (566)
..+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6677777777888888777776532 11 2356667777777777 66666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc
Q 042098 310 NRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN 389 (566)
Q Consensus 310 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 389 (566)
++.... +...++.. ....++..+...|...
T Consensus 171 ~~al~~---------------~~~~~~~~-----------------------------------~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 171 EENLSL---------------VTALGDRA-----------------------------------AQGRAFGNLGNTHYLL 200 (406)
T ss_dssp HHHHHH---------------HHHTTCHH-----------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHhccCcH-----------------------------------HHHHHHHHHHHHHHHc
Confidence 554331 00000000 0134577778888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh
Q 042098 390 GRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYAR 461 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~ 461 (566)
|++++|...+++..+... -.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|..
T Consensus 201 g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp TBHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 999999988888765310 0122 236777788888999999999999887654111112 4577788889999
Q ss_pred cCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHh
Q 042098 462 AGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIE------SSNSGNYVISSKIFAN 527 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 527 (566)
.|++++|.+.+++.... ++ ..++..+...+...|++++|.+.++++++.. +....++..++.++..
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 99999999998876531 22 5577788899999999999999999998873 2335678888999988
Q ss_pred CCChH
Q 042098 528 LKMWD 532 (566)
Q Consensus 528 ~g~~~ 532 (566)
.|+..
T Consensus 360 ~g~~~ 364 (406)
T 3sf4_A 360 LGLSY 364 (406)
T ss_dssp HHTTS
T ss_pred hhHhH
Confidence 88763
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=2.8e-12 Score=123.22 Aligned_cols=231 Identities=11% Similarity=0.033 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNP-DKITLIGVLSACASIGA-LDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
...|+.+...+.+.|++++|+..+++.... .| +...|..+..++...|+ +++|...++.+......
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------
Confidence 457888888999999999999999999885 44 45677777888888886 88888888887775533
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF 443 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 443 (566)
+...|..+..++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+.
T Consensus 165 -----------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l- 229 (382)
T 2h6f_A 165 -----------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE- 229 (382)
T ss_dssp -----------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence 67899999999999999999999999999865 446788999999999999999999999999976
Q ss_pred CCCCC-hhHHHHHHHHHHh-cCCHHHH-----HHHHHhCCC-C-CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCC
Q 042098 444 GLIPK-SEHYSCMVDLYAR-AGHLSEA-----WDFVERMPE-K-VDEIVLGALLGACQKQK--NTDVSQRVMQLLLEIES 512 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~-~-~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p 512 (566)
.|+ ...|+.+..+|.+ .|..++| ++.+++... . .+...|..+...+...| ++++|.+.++++ +.+|
T Consensus 230 --~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p 306 (382)
T 2h6f_A 230 --DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH 306 (382)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC
T ss_pred --CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC
Confidence 555 7789999999999 6665777 477777654 2 45778888888888888 689999999998 8889
Q ss_pred CCchhHHHHHHHHHhCC---------ChHHHHHHHHHH-HhCCC
Q 042098 513 SNSGNYVISSKIFANLK---------MWDDSAKMRALM-REKGV 546 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~g~ 546 (566)
+++..+..++.+|.+.| .+++|.++++++ .+.+.
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999975 359999999998 66543
No 61
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=6.5e-12 Score=111.23 Aligned_cols=193 Identities=15% Similarity=0.044 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042098 254 NFYMGSALIDMYGKCGALVPARRVFDAMVN--K-DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSA 330 (566)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (566)
+...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+. .|+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---------- 71 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR---------- 71 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------
Confidence 344455555666666666666666665532 2 3445555556666666666666666665553 232
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHc-----------CChHHHHHHH
Q 042098 331 CASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFN-----------GRAHEALLLF 399 (566)
Q Consensus 331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~A~~~~ 399 (566)
+...+..+..++... |++++|+..+
T Consensus 72 --------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 72 --------------------------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 344555556666666 8999999999
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 042098 400 ERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-- 477 (566)
Q Consensus 400 ~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 477 (566)
++..+.. +-+...+..+...+...|++++|+..|++..+. . .+...+..+..+|...|++++|+..|++...
T Consensus 108 ~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998854 235677888888899999999999999999887 4 6778888999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLL 508 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (566)
+.+...+..+...+...|++++|...+++..
T Consensus 182 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp TTCHHHHHHHHHHHTC---------------
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2456778888899999999999999888764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3.4e-12 Score=127.37 Aligned_cols=209 Identities=8% Similarity=-0.036 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh-hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHH
Q 042098 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGAL-DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380 (566)
Q Consensus 302 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (566)
+++++..+++..... +.+...+..+-.++...|++ ++|...++...+... .+...|.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------------------~~~~a~~ 141 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------------------ELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------------------TCHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------------------CCHHHHH
Confidence 455666666554431 23455666666677777777 777777766665432 2577899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh---------CcHHHHHHHHHHhHHhcCCCCC-hh
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA---------GLVDEGRRLFDLMSSSFGLIPK-SE 450 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~-~~ 450 (566)
.+..+|...|++++|...|++..+. .|+...+..+...+... |++++|...+++..+. .|+ ..
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 214 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGR 214 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHH
Confidence 9999999999999999999999985 47788889999999999 9999999999999875 455 77
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 451 HYSCMVDLYARA--------GHLSEAWDFVERMPE-KV----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 451 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
.|..+..+|... |++++|++.|++... .| +...|..+..++...|++++|.+.|+++++.+|+++..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 889999999998 999999999999875 35 78889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~ 539 (566)
+..++.++...|++++|.+.++
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999997543
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=3e-09 Score=109.17 Aligned_cols=418 Identities=8% Similarity=0.012 Sum_probs=208.0
Q ss_pred CCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---hhHHHHHHHHHHHhC-CCCchh
Q 042098 80 RPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLA---LNHGVSVHSSVFKIG-LDEDDH 155 (566)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~ 155 (566)
+-|...|..++..+.+. +.++.+..+|+.+... .+.+...|..-+..-.+.++ .+.+..+|+..+... ..|++.
T Consensus 63 p~d~~~W~~yi~~~~~~-~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSL-KQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 35777888888888888 8899999999998876 34455667777777777777 888999988887754 137777
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHhccC------CC-ChhHHHHHHHHHHh---------cCChhHHHHHHHHh
Q 042098 156 VSHSLITMYARCGKL--------DSARKVFDEIR------ER-DLVSWNSMISGYSK---------MGYAKEAVELFGRM 211 (566)
Q Consensus 156 ~~~~li~~~~~~~~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m 211 (566)
.|...+....+.++. +...++|+... .+ +...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888777766665543 23345665422 22 34567776654432 33466777888877
Q ss_pred HHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhc-------CCC-
Q 042098 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDA-------MVN- 283 (566)
Q Consensus 212 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~~- 283 (566)
.......-..+|......-... +...+..++.+. ..+++.|...+.+ +.+
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HhCccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 6421111122332211111110 111122221110 0111222222211 100
Q ss_pred -------------C--C------hhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 042098 284 -------------K--D------VVTWNAMITAYAQNG-------LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIG 335 (566)
Q Consensus 284 -------------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 335 (566)
| + ...|...+.---..+ ..+.+..+|++.... ..-....|.....-+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 0 0 122333332211111 122344555555443 1223444444444445555
Q ss_pred ChhHHH-HHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-------
Q 042098 336 ALDLGK-WVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGG------- 407 (566)
Q Consensus 336 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------- 407 (566)
+.+.|. .+++....... .+...|-..+...-+.|++++|..+|+++.....
T Consensus 358 ~~~~a~r~il~rAi~~~P---------------------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIP---------------------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp CCTTHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555554 55555544321 2344455555555566666666666666554200
Q ss_pred CCCCC------------HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHh
Q 042098 408 AARPN------------DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARA-GHLSEAWDFVER 474 (566)
Q Consensus 408 ~~~p~------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 474 (566)
.-.|+ ...|...++...+.|..+.|..+|.+..+.. -.+....|...+..-.+. ++.+.|.++|+.
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 00121 1234444455555566666666666655420 011122332222222233 235666666665
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 475 MPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS---NSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 475 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..+. .+...|...+......|+.+.|..+|++++...|+ ....|..++..-...|+.+.+.++.+++.+.
T Consensus 496 ~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5442 23344445555555556666666666666655542 3345555555566666666666666666544
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.4e-11 Score=121.00 Aligned_cols=270 Identities=9% Similarity=0.008 Sum_probs=167.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHhcCCCCchhHHHHHHHHHHh----C-CCchHHHHHHHH
Q 042098 192 ISGYSKMGYAKEAVELFGRMREEEFLPDE----ITLVSVLGSCGDLGDLVLGKWVEGFVVKN----K-MDLNFYMGSALI 262 (566)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li 262 (566)
...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...++...+. + ......++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33444445555555555544442111 11 23344444444455555555554444332 1 112334556677
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHCC
Q 042098 263 DMYGKCGALVPARRVFDAMVNK---------DVVTWNAMITAYAQNGL-----------------SNEAIMLFNRMKYAG 316 (566)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~g 316 (566)
..|...|++++|...+++..+- ...++..+...|...|+ +++|+..+++..+..
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777778877777777765221 23356667777777777 666666666543310
Q ss_pred CCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHH
Q 042098 317 VNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEAL 396 (566)
Q Consensus 317 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 396 (566)
...++.. ....++..+...|...|++++|.
T Consensus 214 ---------------~~~~~~~-----------------------------------~~~~~~~~la~~~~~~g~~~~A~ 243 (411)
T 4a1s_A 214 ---------------RDLGDRG-----------------------------------AQGRACGNLGNTYYLLGDFQAAI 243 (411)
T ss_dssp ---------------HHHTCHH-----------------------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHcCCHH-----------------------------------HHHHHHHHHHHHHHHcCChHHHH
Confidence 0000000 01345777888888999999999
Q ss_pred HHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHH
Q 042098 397 LLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 397 ~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 468 (566)
..+++..+... -.++ ..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|
T Consensus 244 ~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 244 EHHQERLRIAR-EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99888765320 0012 236777888889999999999999887764211111 45778888999999999999
Q ss_pred HHHHHhCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 469 WDFVERMPEK----V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 469 ~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
.+.+++.... + ...++..+...+...|++++|...++++++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 9998877542 1 2446777889999999999999999999987543
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=1.3e-11 Score=117.29 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---- 448 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 448 (566)
..+..+...+...|++++|...+++..+... ..++ ..++..+...+...|++++|...+++......-.++
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4577788888899999999999988765310 0111 236777888889999999999999887654211112
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..++..+...|...|++++|...+++.... ++ ..++..+...+...|++++|...++++++..+.
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 457778889999999999999998877542 22 446777889999999999999999999987654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=5.3e-12 Score=122.80 Aligned_cols=233 Identities=8% Similarity=0.031 Sum_probs=158.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 293 ITAYAQNGLSNEAIMLFNRMKYAGV-NPD----KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 293 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
...+...|++++|+..+++..+.-. .++ ..++..+...+...|+++.|...+....+ +
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----------------~ 172 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----------------I 172 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------H
Confidence 3344556666666666666544200 111 23444555555666666666555443332 2
Q ss_pred HccCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 368 FEDMPV---TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 368 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
+..... ....+++.+...|...|++++|...+++..+... -.++ ..++..+...|...|++++|...+++..
T Consensus 173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE-AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222211 1245788899999999999999999999875320 0122 2477888889999999999999999887
Q ss_pred Hhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC---HHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 042098 441 SSF---GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK----VD---EIVLGALLGACQKQKN---TDVSQRVMQL 506 (566)
Q Consensus 441 ~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~ 506 (566)
+.. +..|+ ..++..+...|.+.|++++|.+.+++...- ++ ...+..+...+...|+ .++|..++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 621 22133 567889999999999999999999887541 22 2235667788888898 7777777776
Q ss_pred HHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 507 LLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
. ...|.....+..++.+|...|++++|.+.+++..+.
T Consensus 332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6 223555668889999999999999999999998753
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=1.2e-11 Score=128.43 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=148.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|++.|++..+. .|+ ...|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 46789999999999999999999999999854 234788999999999999999999999999865 666 77999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+..+|...|++++|++.|++..+ . .+...|..+..++...|++++|++.|+++++++|+++..+..++.+|...|++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999998765 2 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 042098 532 DDSAKMRALMRE 543 (566)
Q Consensus 532 ~~A~~~~~~~~~ 543 (566)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=121.46 Aligned_cols=167 Identities=9% Similarity=0.074 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhC------CCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc-----
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKE------GGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF----- 443 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 443 (566)
..++..+...|...|++++|...++++.+. + ..| ....+..+...+...|++++|..+++++....
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK--DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 457888899999999999999999998764 2 123 34567888889999999999999999987641
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK----------V-------DEIVLGALLGACQKQKNTDVSQRVMQ 505 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (566)
+..|. ..++..+...|...|++++|.+.++++... + ....+..+...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 11222 457888999999999999999999887631 1 11222333344555566677777888
Q ss_pred HHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 506 LLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
......|....++..++.+|...|++++|.++++++.+.
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999988754
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=1.7e-11 Score=105.35 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 82 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 3467778889999999999999999988753 456788888999999999999999999999875 12346788889
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
...+...|++++|.+.++++.. +.+...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998764 25677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 042098 534 SAKMRALMREKGV 546 (566)
Q Consensus 534 A~~~~~~~~~~g~ 546 (566)
|.+.++++.+...
T Consensus 163 A~~~~~~~~~~~~ 175 (186)
T 3as5_A 163 ALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC
Confidence 9999999886543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-10 Score=113.22 Aligned_cols=233 Identities=9% Similarity=-0.039 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-----CHhHH
Q 042098 260 ALIDMYGKCGALVPARRVFDAMVN-----KD----VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NP-----DKITL 324 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p-----~~~~~ 324 (566)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.-. .+ ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 356677888999999998888743 22 34688888899999999999999998765311 11 12466
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 042098 325 IGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVT--NEVSWNAMISALAFNGRAHEALLLFERM 402 (566)
Q Consensus 325 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m 402 (566)
..+-..+...|++++|...+....+. ......+ ...++..+..+|...|++++|...+++.
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSM-----------------AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH-----------------HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77778889999999998877666542 2222101 1347888999999999999999999998
Q ss_pred HhC----CCCC-CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHH
Q 042098 403 SKE----GGAA-RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---SEHYSCMVDLYARAGH---LSEAWDF 471 (566)
Q Consensus 403 ~~~----g~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~ 471 (566)
.+. + . +....++..+...+...|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.+
T Consensus 251 l~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 251 IAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 762 2 2 334677888999999999999999999988764211112 2345678888889999 9999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 472 VERMPEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 472 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
+++....|+ ...+..+...+...|++++|...++++++..
T Consensus 329 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999865433 4567778899999999999999999998864
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.6e-08 Score=103.77 Aligned_cols=434 Identities=7% Similarity=0.015 Sum_probs=270.1
Q ss_pred HHHHHHHHHhCCCCChHHHHHhh----cCCCchhHHHHhhcCC---CCCcchHHHHHHHHHcCCCC---hhHHHHHHHHH
Q 042098 41 QQIHTQMLINFIQKPNFLLIRII----DLKDFNYASLLFHQIS---RPNEYAFNVMIRGLTTAWQK---YSHSLKLYYQM 110 (566)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~---~~~a~~~~~~m 110 (566)
..+.+.+.+. +.+...|..++ +.++++.+..+|+.+. +.....|..-+..-.+. ++ ++.+..+|+..
T Consensus 53 ~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHH
Confidence 3444444444 35777787777 6789999999999884 23556788888887787 88 99999999999
Q ss_pred HHCC-CCCCcccHHHHHHHHHccCCh--------hHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCC
Q 042098 111 KRLG-LKPDNFTYPFVFISCANLLAL--------NHGVSVHSSVFK-IGL-DED-DHVSHSLITMYAR---------CGK 169 (566)
Q Consensus 111 ~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~~~ 169 (566)
.... ..|+...|..-+....+.++. +...++|+..+. .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8863 247888888877766665554 334577777665 465 554 4678877766442 345
Q ss_pred HHHHHHHHhccCC-C--Ch-hHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHH
Q 042098 170 LDSARKVFDEIRE-R--DL-VSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGF 245 (566)
Q Consensus 170 ~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 245 (566)
++.+.++|+.... | +. .+|..... +.+.-+...+.+++.+... +++.|...+..
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~~---------------------~y~~Ar~~~~e 267 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELSA---------------------QYMNARSLYQD 267 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhhH---------------------HHHHHHHHHHH
Confidence 7888999988875 2 11 23332221 1111011112222222100 00111111111
Q ss_pred HHHh--CC----------------C-------chHHHHHHHHHHHHhcC-------CHHHHHHHHhcCCC---CChhHHH
Q 042098 246 VVKN--KM----------------D-------LNFYMGSALIDMYGKCG-------ALVPARRVFDAMVN---KDVVTWN 290 (566)
Q Consensus 246 ~~~~--~~----------------~-------~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~ 290 (566)
+... ++ + .....|...+..-...+ ..+.+..+|++... .+...|-
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~ 347 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWF 347 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 0000 00 0 00123333333222211 12233445555422 3566788
Q ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHc
Q 042098 291 AMITAYAQNGLSNEAI-MLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFE 369 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 369 (566)
..+..+.+.|+.++|. .+|++.... ++.+...+...+......|+++.|..+++.+...... ..+.+.
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~----------~~~~~~ 416 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL----------DLAALM 416 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----------Hhhhhh
Confidence 8888888889988896 999998764 3334444555666677788899999888877753100 000000
Q ss_pred cCCCC------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHhh-hCcHHHHHHH
Q 042098 370 DMPVT------------NEVSWNAMISALAFNGRAHEALLLFERMSKE-GGAARPNDVTFIGVLSACVH-AGLVDEGRRL 435 (566)
Q Consensus 370 ~~~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~p~~~t~~~ll~~~~~-~g~~~~A~~~ 435 (566)
.- .| ....|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .++.+.|..+
T Consensus 417 ~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 417 ED-DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hc-cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 00 01 2346888888888899999999999999876 3 1223334332222223 3569999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
|+...+.+ .-+...+...++.....|+.+.|..+|++.... | ....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 493 fe~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 493 LELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999873 224556678888888999999999999998765 4 3467888888888999999999999999999
Q ss_pred CCCCch
Q 042098 511 ESSNSG 516 (566)
Q Consensus 511 ~p~~~~ 516 (566)
.|+++.
T Consensus 571 ~P~~~~ 576 (679)
T 4e6h_A 571 FPEVNK 576 (679)
T ss_dssp STTCCH
T ss_pred CCCCcH
Confidence 998753
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=4.5e-10 Score=105.34 Aligned_cols=185 Identities=8% Similarity=0.005 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChh-HHH
Q 042098 303 NEAIMLFNRMKYAGVNPD-KITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEV-SWN 380 (566)
Q Consensus 303 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 380 (566)
++|..+|++..+. +.|+ ...+..+...+...|+++.|..+++.+.+... .+.. +|.
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------------------~~~~~~~~ 138 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED---------------------IDPTLVYI 138 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS---------------------SCTHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc---------------------cCccHHHH
Confidence 5666666665552 1232 23444444444444444444444444443211 1222 577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh-hhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV-HAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDL 458 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (566)
.++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..+|+...+. .| +...+..++..
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~ 212 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 77777777778888888888777653 233333433322221 257788888888777765 23 35667777777
Q ss_pred HHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 459 YARAGHLSEAWDFVERMPE----KV--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
+.+.|++++|..+|++... .| ....|..++....+.|+.+.|..+++++.+..|++.
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 7777888888888777654 22 345677777777777888888888888877777654
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.4e-10 Score=99.65 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHH
Q 042098 285 DVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDA 364 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A 364 (566)
+...|..+...+.+.|++++|+..|++..+. .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~-------------------------------------------- 37 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPN-------------------------------------------- 37 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------------------------
Confidence 4556777777777777777777777776653 232
Q ss_pred HHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC
Q 042098 365 LKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444 (566)
Q Consensus 365 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 444 (566)
+..++..+..+|.+.|++++|...+.+..... +-+...+..+...+...++++.|...++.....
T Consensus 38 ----------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-- 102 (184)
T 3vtx_A 38 ----------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-- 102 (184)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 56678888888999999999999999988764 345667777778888899999999999988865
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 445 LIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 445 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
.|+ ...+..+..+|.+.|++++|++.|++..+ +.+...|..+..++.+.|++++|.+.|+++++.+|+++
T Consensus 103 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 103 -NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred -CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 444 67888899999999999999999998764 24677889999999999999999999999999988754
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=6.5e-10 Score=104.29 Aligned_cols=217 Identities=9% Similarity=0.002 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-------ccCCh-------hHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Q 042098 303 NEAIMLFNRMKYAGVNPDKITLIGVLSACA-------SIGAL-------DLGKWVDKYASQRGLRHDIFCGSIDDALKVF 368 (566)
Q Consensus 303 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 368 (566)
++|..+|++..... +-+...|..+...+. ..|+. ++|..+++...+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------------------ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------ 93 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------------------
Confidence 56777777776642 223445555444443 34554 5566555555541
Q ss_pred ccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HH-HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 369 EDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DV-TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
+.+.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .
T Consensus 94 --~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~ 164 (308)
T 2ond_A 94 --LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 164 (308)
T ss_dssp --TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---T
T ss_pred --hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C
Confidence 11235678999999999999999999999999984 354 33 7888899999999999999999999864 3
Q ss_pred CC-hhHHHHHHHHHH-hcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CchhH
Q 042098 447 PK-SEHYSCMVDLYA-RAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI---ESS-NSGNY 518 (566)
Q Consensus 447 p~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~ 518 (566)
|+ ...|........ ..|++++|.++|++.... .+...|..++..+.+.|+.++|..+|+++++. .|+ +...|
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 43 445544433322 379999999999988653 46788899999999999999999999999996 443 66789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 519 VISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..++..+.+.|+.++|..+++++.+....
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999876554
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=6.6e-10 Score=107.65 Aligned_cols=131 Identities=10% Similarity=0.115 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSK-----EGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--- 448 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--- 448 (566)
.++..+..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+...-..+
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4677888889999999999999988876 32 233667788888889999999999999888765222122
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 449 SEHYSCMVDLYARAGH---LSEAWDFVERMPEKVD-EIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
...+..+...|...|+ +.+|+..+++....|+ ...+..+...+...|++++|...++++.+.
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345555566666666 7777777776543222 234445566666677777777766666553
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=5.7e-10 Score=108.11 Aligned_cols=167 Identities=8% Similarity=0.004 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CC-CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC--CCCC-h
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGA--AR-PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG--LIPK-S 449 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~p~-~ 449 (566)
..+++.+...|...|++++|...+++..+.... .+ ....++..+...|...|++++|...+++...... ..|. .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 346788889999999999999999887653100 11 1235677888899999999999999999876210 1233 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHH
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE------KVD-EIVLGALLGACQKQKN---TDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
.++..+...|.+.|++++|...+++... .+. ...+..+...+...++ ..+|...+++. ...|.....+.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 6788899999999999999999987643 122 3345556677777888 77777777662 12244556788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 042098 520 ISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++.+|...|++++|.+.++++.+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=3.9e-11 Score=119.69 Aligned_cols=168 Identities=10% Similarity=-0.030 Sum_probs=151.2
Q ss_pred CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhH
Q 042098 373 VTNEVSWNAMISALAFNGRA-HEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEH 451 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 451 (566)
+.+...+..+...+...|++ ++|+..|++..+.. +-+...+..+...|...|++++|...|++..+. .|+...
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 172 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVS 172 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHH
Confidence 34678899999999999999 99999999999864 345788999999999999999999999999854 688888
Q ss_pred HHHHHHHHHhc---------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCC
Q 042098 452 YSCMVDLYARA---------GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQ--------KNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 452 ~~~l~~~~~~~---------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~p 512 (566)
+..+..+|... |++++|++.+++... ..+...|..+..++... |++++|...|+++++.+|
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 99999999999 999999999998764 24678899999999998 999999999999999999
Q ss_pred ---CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 513 ---SNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 513 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.++..+..++.+|...|++++|.+.++++.+...
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999987644
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=4e-09 Score=101.95 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=172.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCC----CCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----hHHHHHH
Q 042098 262 IDMYGKCGALVPARRVFDAMV----NKDV----VTWNAMITAYAQNGLSNEAIMLFNRMKYAGV-NPDK----ITLIGVL 328 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll 328 (566)
...+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334445666666666655431 1111 1344555566667777777777766644210 0111 1234445
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042098 329 SACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPV---T-NEVSWNAMISALAFNGRAHEALLLFERMSK 404 (566)
Q Consensus 329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 404 (566)
..+...|++++|...++..... ...... | ....+..+...+...|++++|...+++...
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQL-----------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-----------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5566677777777666554432 111111 1 234567788889999999999999999876
Q ss_pred CCCCCCC--CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCCC
Q 042098 405 EGGAARP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS-----CMVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 405 ~g~~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
......+ ...++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++...
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4311111 245677788889999999999999998876421111111221 233457899999999999999875
Q ss_pred C-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----C-chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 478 K-VD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS-----N-SGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 478 ~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
. +. ...+..+...+...|++++|...++++....+. + ...+..++.++...|++++|...+++..+
T Consensus 244 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 21 234567778999999999999999999876432 1 24677889999999999999999988764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1.2e-10 Score=103.96 Aligned_cols=169 Identities=10% Similarity=-0.035 Sum_probs=145.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
.++..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|...+++..+. .|+ ...+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHH
Confidence 356788888999999999999999999999875 2377788877888999999999999999998864 565 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPEK-VD-E-------IVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVIS 521 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l 521 (566)
..+..+|...|++++|++.+++.... |+ . ..|..+...+...|++++|++.++++++.+|. ++..+..+
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 89999999999999999999987652 33 3 45777888899999999999999999999999 88999999
Q ss_pred HHHHHhCCCh---------------------------HHHHHHHHHHHhCCCc
Q 042098 522 SKIFANLKMW---------------------------DDSAKMRALMREKGVS 547 (566)
Q Consensus 522 ~~~~~~~g~~---------------------------~~A~~~~~~~~~~g~~ 547 (566)
+.+|...|+. ++|...+++..+....
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999988 8999999998876543
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=5.6e-11 Score=111.64 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC
Q 042098 257 MGSALIDMYGKCGALVPARRVFDAMVN--------K---DVVTWNAMITAYAQNGLSNEAIMLFNRMKYA------GVNP 319 (566)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p 319 (566)
++..+...+...|++++|..+|+++.+ . ....+..+...+...|++++|...+++.... +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344445555555555555555554422 1 1234455555556666666666666555432 1111
Q ss_pred -CHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 042098 320 -DKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLL 398 (566)
Q Consensus 320 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 398 (566)
...++..+...+...|++++|...+....+.... .+..-.+.....+..+...+...|++++|..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-------------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334555555666666666666655554432100 00000001345688889999999999999999
Q ss_pred HHHHHhC------CCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc------CCCCCh-------hHHHHHHHH
Q 042098 399 FERMSKE------GGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSF------GLIPKS-------EHYSCMVDL 458 (566)
Q Consensus 399 ~~~m~~~------g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~~-------~~~~~l~~~ 458 (566)
++++.+. + ..|+ ..++..+...+...|++++|...++++.+.. ...+.. ..+..+...
T Consensus 176 ~~~a~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 176 YQRALEIYQTKLGP--DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHTSCT--TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 9998764 1 1233 4567888889999999999999999988631 112221 122223333
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 459 YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
+...+.+.+|...++..... ....++..+..++...|++++|.+.+++++++.|.
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 44555566666666666543 34567888999999999999999999999988765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=2e-09 Score=96.03 Aligned_cols=209 Identities=8% Similarity=0.007 Sum_probs=151.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+....+....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------- 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---------- 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------
Confidence 3567788888899999999999999999988754467777777777888888888888777777664322
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHhhhCcHHHHHHHH
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND-------VTFIGVLSACVHAGLVDEGRRLF 436 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~ 436 (566)
+...|..+..+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|
T Consensus 75 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 75 -----------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp -----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 46678888888888999999999998888753 2233 34666777778888889999888
Q ss_pred HHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 437 DLMSSSFGLIPK---SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 437 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
++..+ +.|+ ...+..+..+|...|+. +++++.. ..+...+.... ....+.+++|...++++++..
T Consensus 141 ~~al~---~~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 141 KHATD---VTSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHTT---SSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHh---cCCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 88874 3565 45677777777665543 2222211 12334443333 234466899999999999999
Q ss_pred CCCchhHHHHHHHHH
Q 042098 512 SSNSGNYVISSKIFA 526 (566)
Q Consensus 512 p~~~~~~~~l~~~~~ 526 (566)
|+++.+...+..+..
T Consensus 211 p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 211 PNRTEIKQMQDQVKA 225 (228)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999988888876654
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=1.7e-09 Score=96.29 Aligned_cols=170 Identities=7% Similarity=-0.002 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----h
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----E 450 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~ 450 (566)
...+..+...+...|++++|+..|+++.+..+ ..|. ...+..+..++.+.|++++|+..|+++.+. .|+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCcHHH
Confidence 44566677788899999999999999987541 1121 356777888899999999999999999876 3442 2
Q ss_pred HHHHHHHHHHh------------------cCCHHHHHHHHHhCCCC-CCHH-HH-----------------HHHHHHHHh
Q 042098 451 HYSCMVDLYAR------------------AGHLSEAWDFVERMPEK-VDEI-VL-----------------GALLGACQK 493 (566)
Q Consensus 451 ~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~-~~~~-~~-----------------~~l~~~~~~ 493 (566)
.+..+..++.. .|++++|+..|+++... |+.. .+ ..+...+.+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555543 57899999999988764 4432 22 234567889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNS---GNYVISSKIFANLKMWDDSAKMRALMREKGVSKT 549 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 549 (566)
.|+++.|...|+++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+....
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999886 5788999999999999999999999988766543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=1.2e-08 Score=98.57 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH----HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---h
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI----GVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---S 449 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~ 449 (566)
.++..+...+...|++++|...+++................ ..+..+...|++++|...++..... ...+. .
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~ 253 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhH
Confidence 35667777888888888888888887653200111111111 2233466788899998888877643 21111 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPEK----V---DE-IVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
..+..+...+...|++++|...+++.... + +. ..+..+..++...|+.++|...+++++...+
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 24567778888889999988888776431 1 12 2555566788888999999999999887643
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1e-08 Score=93.32 Aligned_cols=135 Identities=11% Similarity=0.119 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHH--hhhC--cHHHHHHHHHHhHHhcCCC
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARP-----NDVTFIGVLSAC--VHAG--LVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p-----~~~t~~~ll~~~--~~~g--~~~~A~~~~~~~~~~~~~~ 446 (566)
...+-.++..+.+.|+.+.|.+.+++|.+ ..| +..+...|..++ ...| ++..|..+|+++... .
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~ 208 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTN----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---F 208 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---C
Confidence 45566778889999999999999999987 447 356666666663 3334 899999999998754 4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 447 PKSEHYSCMVDLYARAGHLSEAWDFVERMPE------------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
|+..+...++.++.+.|++++|.+.++.+.. ..++.+...++......|+ +|.++++++.+..|++
T Consensus 209 p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 209 PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 5533444555588999999999999986544 2345556566666666777 8899999999999998
Q ss_pred chhHH
Q 042098 515 SGNYV 519 (566)
Q Consensus 515 ~~~~~ 519 (566)
+.+..
T Consensus 287 p~i~d 291 (310)
T 3mv2_B 287 AFIKH 291 (310)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 85543
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=1.8e-09 Score=92.41 Aligned_cols=155 Identities=13% Similarity=-0.009 Sum_probs=130.5
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
|++++|...|+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 55666666666654 3467889999999999999999999999998864 45678888899999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 436 FDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
++.+.+. .+.+...+..+...+...|++++|.+.+++.... .+...+..+...+...|++++|...++++.+..|+
T Consensus 99 ~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 99 LIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999875 2335778888999999999999999999987642 45788889999999999999999999999999888
Q ss_pred CchhH
Q 042098 514 NSGNY 518 (566)
Q Consensus 514 ~~~~~ 518 (566)
+....
T Consensus 177 ~~~~~ 181 (186)
T 3as5_A 177 ASVEL 181 (186)
T ss_dssp CCGGG
T ss_pred chhhH
Confidence 76543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=1.2e-08 Score=92.94 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=134.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-----
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP----- 447 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p----- 447 (566)
++..++..+..++...|++++|++++.+.+..| . .-+...+..++..+.+.|+.+.|.+.++.|.+. .|
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~ 172 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDND--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSG 172 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---Ccccccc
Confidence 455566688899999999999999999988766 2 125677888899999999999999999999865 66
Q ss_pred ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CC
Q 042098 448 KSEHYSCMVDL--YARAG--HLSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI----------ES 512 (566)
Q Consensus 448 ~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p 512 (566)
+..+...|+.+ ....| ++.+|..+|+++..+ |+..+-..++.++...|++++|++.++.+.+. +|
T Consensus 173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 35555566655 33334 999999999999876 65445555666899999999999999988876 48
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 513 SNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 513 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
+++.++..++.+....|+ +|.++++++.+..+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 899999888888888897 899999999887643
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=5e-09 Score=97.33 Aligned_cols=147 Identities=10% Similarity=-0.058 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCCC-CC--CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh---
Q 042098 377 VSWNAMISALAFN-GRAHEALLLFERMSKEGGAA-RP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--- 449 (566)
Q Consensus 377 ~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~~-~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--- 449 (566)
.+++.+...|... |++++|+..|++..+..+.. .+ ...++..+...+...|++++|...|++..+...-.+..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3577788888886 99999999998887632000 00 03567788888999999999999999888651111111
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhH
Q 042098 450 --EHYSCMVDLYARAGHLSEAWDFVERMPEK-VDE------IVLGALLGACQ--KQKNTDVSQRVMQLLLEIESSNSGNY 518 (566)
Q Consensus 450 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (566)
..|..+..++...|++++|+..|++...- |+. ..+..++.++. ..+++++|+..|+++..++|.+...+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 15677778888899999999999887652 332 12344555554 34678888888888777777655444
Q ss_pred HHHHH
Q 042098 519 VISSK 523 (566)
Q Consensus 519 ~~l~~ 523 (566)
..+-.
T Consensus 278 ~~~k~ 282 (292)
T 1qqe_A 278 NKIKE 282 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=8.4e-10 Score=101.84 Aligned_cols=169 Identities=8% Similarity=0.054 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc-----CC
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKE-----GGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF-----GL 445 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~ 445 (566)
..++..+...|...|++++|...+++.... +...+....++..+...+...|++++|...+++..+.. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456888999999999999999999998764 10012235678888889999999999999999887641 11
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C-CHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Q 042098 446 IPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK----------V-DEIVLGALLGACQKQKN------TDVSQRVMQLL 507 (566)
Q Consensus 446 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~------~~~A~~~~~~~ 507 (566)
.|+ ..++..+...|...|++++|.+.+++.... + ....|..+.......+. +..+...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 232 567888999999999999999999876531 1 22233333333333222 23333333332
Q ss_pred HhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 508 LEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 508 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
....|....++..++.+|...|++++|.++++++.+.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2233556678899999999999999999999988764
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=2.5e-09 Score=97.61 Aligned_cols=169 Identities=7% Similarity=0.025 Sum_probs=137.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK- 448 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 448 (566)
.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..++...|++++|...|+...+.+.-.|.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 456677788888999999999999999999864 33 567888888999999999999999999876222223
Q ss_pred hhHHHHHHHHHHh--------cCCHHHHHHHHHhCCCC-CC-HHHH-----------------HHHHHHHHhcCCHHHHH
Q 042098 449 SEHYSCMVDLYAR--------AGHLSEAWDFVERMPEK-VD-EIVL-----------------GALLGACQKQKNTDVSQ 501 (566)
Q Consensus 449 ~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~-~~-~~~~-----------------~~l~~~~~~~~~~~~A~ 501 (566)
...+..+..++.. .|++++|+..|+++... |+ .... ..+...+.+.|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4567778888888 99999999999987652 43 2223 45578899999999999
Q ss_pred HHHHHHHhhCCCC---chhHHHHHHHHHhC----------CChHHHHHHHHHHHhCCC
Q 042098 502 RVMQLLLEIESSN---SGNYVISSKIFANL----------KMWDDSAKMRALMREKGV 546 (566)
Q Consensus 502 ~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~ 546 (566)
..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 9999999999885 45888999999877 999999999999987654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=3.3e-09 Score=85.39 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQK 493 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 493 (566)
+..+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|...++++.. ..+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555443 1 11234444555555555555555555555432 1344566667777778
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
.|++++|.+.++++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888776643
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=2.9e-09 Score=110.61 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~ 453 (566)
+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|++.|++..+. .|+ ...|.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~ 115 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHS 115 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 34456666666777777777777777776643 223566666777777777777777777766654 444 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.+..+|.+.|++++|++.|++..+ . .+...+..+..++...|++++|.+.++++++.
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 777777777777777777776543 2 34566667777777777777777777777664
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.7e-09 Score=100.42 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CC--CHHHHHHHHHHHhhh-CcHHHHHHHHHHhHHhcCCCCC---
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAA-RP--NDVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGLIPK--- 448 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p--~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~--- 448 (566)
..+|+.+..+|...|++++|+..+++..+..... .+ ...++..+...|... |++++|+..+++..+...-..+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 3468888899999999999999999886532000 11 145788888899996 9999999999998864211111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-
Q 042098 449 -SEHYSCMVDLYARAGHLSEAWDFVERMPEK-V---DE-----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN- 517 (566)
Q Consensus 449 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~- 517 (566)
..++..+...|.+.|++++|+..|++.... | .. ..|..+..++...|++++|...+++++++.|.....
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 356888999999999999999999987542 2 21 156777888999999999999999999998875543
Q ss_pred ----HHHHHHHHH--hCCChHHHHHHHHHHHh
Q 042098 518 ----YVISSKIFA--NLKMWDDSAKMRALMRE 543 (566)
Q Consensus 518 ----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 543 (566)
+..++.++. ..+++++|.+.++++.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 344566664 45778888888865543
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=1.9e-08 Score=88.40 Aligned_cols=163 Identities=8% Similarity=0.021 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC----cHHHHHHHHHHhHHhcCCCCCh
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG----LVDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~ 449 (566)
.+..++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|...|++..+. + ++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~ 85 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SK 85 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 467788999999999999999999999999876 56677777777777 6 899999999998764 3 56
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchh
Q 042098 450 EHYSCMVDLYAR----AGHLSEAWDFVERMPEKVD----EIVLGALLGACQK----QKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 450 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
..+..|...|.. .+++++|++.|++.....+ ...+..|...|.. .++.++|...|+++.+. |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 778888888887 8899999999999987644 7888999999988 88999999999999988 677788
Q ss_pred HHHHHHHHHhC-C-----ChHHHHHHHHHHHhCCCc
Q 042098 518 YVISSKIFANL-K-----MWDDSAKMRALMREKGVS 547 (566)
Q Consensus 518 ~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~~ 547 (566)
+..|+.+|... | ++++|.+.+++..+.|..
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999864 3 999999999999988764
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=3.8e-10 Score=93.13 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=104.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 042098 384 SALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYAR 461 (566)
Q Consensus 384 ~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 461 (566)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|++..+. .|+ ..+|..+..+|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 3444567788888888877653 233 344556777788888888888888888765 554 6778888888888
Q ss_pred cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 462 AGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQR-VMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
.|++++|+..|++..+ .| +...|..+...+.+.|+.++|.+ .++++++++|.++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888887764 23 56778888888888888876555 4588888889888888888888887775
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=8.1e-09 Score=94.19 Aligned_cols=195 Identities=13% Similarity=-0.012 Sum_probs=129.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHH
Q 042098 284 KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDD 363 (566)
Q Consensus 284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (566)
.+...+..+...+.+.|++++|+..|+++.+.. |+...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~---------------------------------------- 50 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEW---------------------------------------- 50 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTT----------------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcc----------------------------------------
Confidence 345566666677777778888887777776642 32100
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh--------hCcHHHHHHH
Q 042098 364 ALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH--------AGLVDEGRRL 435 (566)
Q Consensus 364 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~--------~g~~~~A~~~ 435 (566)
....+..+..+|.+.|++++|...|++..+..+.-+.....+..+..++.. .|++++|...
T Consensus 51 -----------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 51 -----------AADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp -----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 033455566677777777777777777776531011113445556666666 7777777777
Q ss_pred HHHhHHhcCCCCC-hhHH-----------------HHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHH
Q 042098 436 FDLMSSSFGLIPK-SEHY-----------------SCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQ 492 (566)
Q Consensus 436 ~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~ 492 (566)
|+++.+. .|+ .... ..+...|.+.|++++|+..|+++... |+ ...+..+..++.
T Consensus 120 ~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 120 FQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 7777765 333 2222 55678899999999999999987642 43 456667777787
Q ss_pred hc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhCCChHHH
Q 042098 493 KQ----------KNTDVSQRVMQLLLEIESSNSG---NYVISSKIFANLKMWDDS 534 (566)
Q Consensus 493 ~~----------~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A 534 (566)
.. |++++|...++++++..|+++. ....+..++...|+++++
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 66 8999999999999999999864 444555555555555443
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=1.6e-08 Score=93.12 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhC-----CCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc------
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKE-----GGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF------ 443 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 443 (566)
..++..+...|...|++++|...+++..+. +. ..| ...++..+...+...|++++|...+++..+..
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456777888888999999999999888764 10 123 24567788888999999999999998887531
Q ss_pred CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 444 GLIPK-SEHYSCMVDLYARAG------HLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
...+. ...+..+...+...+ .+.++...++..... ....++..+...+...|++++|...++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 233444444433322 344555555555433 23456788889999999999999999998864
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=6e-09 Score=96.42 Aligned_cols=175 Identities=8% Similarity=-0.036 Sum_probs=141.9
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 363 DALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
.....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 33444444444566778888899999999999999999999864 345678888999999999999999999988754
Q ss_pred cCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chh
Q 042098 443 FGLIPKSEHYS-CMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN--SGN 517 (566)
Q Consensus 443 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~ 517 (566)
.|+..... .....+...++.++|+..+++... ..+...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 56644332 233346677888889988887754 2467888899999999999999999999999999988 889
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887653
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.3e-08 Score=81.69 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... . +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHH
Confidence 57788899999999999999999998864 346778888899999999999999999999875 2 334678888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 458 LYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
.+...|++++|.+.++++... .+...+..+...+...|++++|...++++.+..|.+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999987642 457788889999999999999999999999988863
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=1.1e-08 Score=104.93 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=123.8
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
|++++|.+.|++.. +.+...|..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77889999998876 4567889999999999999999999999998864 34577888899999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 042098 436 FDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQ---KNTDVSQRVMQLLLE 509 (566)
Q Consensus 436 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 509 (566)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.... .+...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998875 454 678889999999999999999999987642 4567888888999999 999999999999999
Q ss_pred hCCCCchhHHHHH
Q 042098 510 IESSNSGNYVISS 522 (566)
Q Consensus 510 ~~p~~~~~~~~l~ 522 (566)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=3.7e-09 Score=110.31 Aligned_cols=151 Identities=11% Similarity=-0.044 Sum_probs=130.7
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhH
Q 042098 373 VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEH 451 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 451 (566)
+.+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+. .|+ ...
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~ 503 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAP 503 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHH
Confidence 3467789999999999999999999999999864 346778888899999999999999999999875 565 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..+..+|.+.|++++ ++.|++... ..+...|..+..++.+.|++++|.+.++++++.+|.+...+..++.++...|
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 8999999999999999 999998764 2467788999999999999999999999999999999999999999998766
Q ss_pred C
Q 042098 530 M 530 (566)
Q Consensus 530 ~ 530 (566)
+
T Consensus 583 ~ 583 (681)
T 2pzi_A 583 S 583 (681)
T ss_dssp -
T ss_pred C
Confidence 5
No 101
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=1.7e-07 Score=87.04 Aligned_cols=164 Identities=12% Similarity=-0.031 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH----HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV----TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SE 450 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 450 (566)
+...+..+...|++++|..++++..+... ..|+.. .+..+...+...|++++|...++.......-.++ ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33446788899999999999999987431 223322 2334666677788999999999999874122223 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------c
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE-------K-V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN------S 515 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 515 (566)
+++.+...|...|++++|+..++++.. . + ...++..+...|.+.|++++|...++++++..+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 689999999999999999999988762 1 1 23477888999999999999999999999875332 5
Q ss_pred hhHHHHHHHHHhCCC-hHHHHHHHHHHHh
Q 042098 516 GNYVISSKIFANLKM-WDDSAKMRALMRE 543 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 543 (566)
.+|..++.+|...|+ +++|.+.++++.+
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 789999999999995 6999999988753
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=1.9e-09 Score=88.92 Aligned_cols=125 Identities=13% Similarity=-0.017 Sum_probs=104.6
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQK 495 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 495 (566)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++... +.+...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456678899999999987763 3555 55677899999999999999999999865 346788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH-HHHHHhCCC
Q 042098 496 NTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM-RALMREKGV 546 (566)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~ 546 (566)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. ++++.+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 588877544
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=7e-09 Score=88.19 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVD 457 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 457 (566)
.+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .|+...+..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~ 81 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAK 81 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHH
Confidence 45567778889999999999999987753 345678888889999999999999999988754 444333332222
Q ss_pred H-HHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhCCChH
Q 042098 458 L-YARAGHLSEAWDFVERMPE-KV-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN--SGNYVISSKIFANLKMWD 532 (566)
Q Consensus 458 ~-~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 532 (566)
. +...+...+|+..+++... .| +...+..+..++...|++++|...++++++.+|.. +..+..++.++...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2 2222333456777777654 24 57888889999999999999999999999999875 568999999999999999
Q ss_pred HHHHHHHHHHh
Q 042098 533 DSAKMRALMRE 543 (566)
Q Consensus 533 ~A~~~~~~~~~ 543 (566)
+|...+++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987653
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=6.7e-09 Score=85.16 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=86.3
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.+.|+ ...+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44555 45677777888888888888888888764 2467788888899999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++.+|...|++++|.+.++++.+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887654
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=1.6e-08 Score=80.34 Aligned_cols=106 Identities=11% Similarity=-0.031 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 491 (566)
.+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++... ..+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444455555555555555555555543 232 44455555555555555555555554432 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...|++++|.+.|+++++++|++..++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555555555555555555555555444443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=4.8e-08 Score=100.06 Aligned_cols=153 Identities=10% Similarity=0.003 Sum_probs=120.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSE 467 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 467 (566)
.|++++|...+++..+.. +-+...+..+...+...|++++|.+.+++..+. .|+ ...+..+..+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHH
Confidence 478899999999998754 345788889999999999999999999998854 565 6788999999999999999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC---CChHHHHHHHHHHH
Q 042098 468 AWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL---KMWDDSAKMRALMR 542 (566)
Q Consensus 468 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 542 (566)
|++.+++... ..+...+..+..++...|++++|.+.++++++.+|.+...+..++.++... |++++|.+.++++.
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998765 245788899999999999999999999999999999999999999999999 99999999999988
Q ss_pred hCCCc
Q 042098 543 EKGVS 547 (566)
Q Consensus 543 ~~g~~ 547 (566)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 76554
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1.2e-08 Score=106.44 Aligned_cols=153 Identities=9% Similarity=-0.066 Sum_probs=134.2
Q ss_pred HHcCChHHHHHHHHHHH--------hCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 042098 387 AFNGRAHEALLLFERMS--------KEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVD 457 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~--------~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~ 457 (566)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...+++..+. .|+ ...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHH
Confidence 67899999999999998 432 345677888889999999999999999999875 454 678899999
Q ss_pred HHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 458 LYARAGHLSEAWDFVERMPE-K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
+|...|++++|++.|++... . .+...|..+..++.+.|++++ ++.|+++++.+|.+...+..++.+|.+.|++++|.
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999764 2 456788899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 042098 536 KMRALMREKGV 546 (566)
Q Consensus 536 ~~~~~~~~~g~ 546 (566)
+.++++.+.+.
T Consensus 555 ~~~~~al~l~P 565 (681)
T 2pzi_A 555 RTLDEVPPTSR 565 (681)
T ss_dssp HHHHTSCTTST
T ss_pred HHHHhhcccCc
Confidence 99987765543
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=2.3e-07 Score=86.68 Aligned_cols=156 Identities=12% Similarity=-0.003 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hh
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGA-ARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SE 450 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 450 (566)
+|+.+...|...|++++|+..|++..+.-.. -.|. ..++..+...|.. |++++|+..+++......-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3555555666666666666666655432000 0111 2445555566666 6777776666666543110001 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK----VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN----- 517 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----- 517 (566)
++..+...|.+.|++++|+..|++.... +. ...+..++.++...|++++|...+++++ ..|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 5566666677777777777766665431 11 1244445556666677777777777777 66654322
Q ss_pred HHHHHHHHHhCCChHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~ 536 (566)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 23334433 4555555544
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=9.1e-08 Score=84.03 Aligned_cols=130 Identities=13% Similarity=-0.009 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 454 (566)
...+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...++...+. .| +...+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 76 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHH
Confidence 344566777788888888888888754 5678888888888888888888888888888765 34 3667788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-----------------DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
+..+|...|++++|++.|++.... | ....+..+..++...|++++|...++++++..|.+
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888888888876542 2 12567777788888888888888888888888775
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=9.5e-07 Score=81.89 Aligned_cols=165 Identities=12% Similarity=-0.028 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND----VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK---- 448 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---- 448 (566)
..+...+..+...|++++|.+.+++..+... ..++. ..+..+...+...|++++|...++.......-..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3456677888999999999999998887541 11111 22334555677889999999999988753111112
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE----KVD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESS------ 513 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------ 513 (566)
..+++.+...|...|++++|+..+++... .|+ ..++..+...|...|++++|...++++++..+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34788999999999999999999988752 122 257888999999999999999999999986422
Q ss_pred CchhHHHHHHHHHhCCChHHH-HHHHHHHH
Q 042098 514 NSGNYVISSKIFANLKMWDDS-AKMRALMR 542 (566)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 542 (566)
-..+|..++.+|...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156788999999999999999 77787765
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=8.4e-08 Score=89.70 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CC--CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC--CC--hhH
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAA-RP--NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI--PK--SEH 451 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--p~--~~~ 451 (566)
|+.....|...|++++|...|.+..+..... .+ -..+|..+...|...|++++|...+++....+.-. +. ..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555678889999999999998876532000 11 14578888889999999999999999877542111 11 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hh
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPEK----V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS------GN 517 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~ 517 (566)
+..+...|.. |++++|+..|++...- . ...++..+...+...|++++|+..++++++..|.+. ..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 7888899988 9999999999887541 1 146788889999999999999999999999865443 36
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 518 YVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
+..++.++...|++++|...+++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7778888999999999999999988
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.8e-07 Score=81.75 Aligned_cols=181 Identities=9% Similarity=0.008 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.+-.....+...|++++|+..|++..+. .|+........ ..... ..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~--~~----------------------------- 51 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKN--SE----------------------------- 51 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTT--SH-----------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcch--hh-----------------------------
Confidence 3444555677889999999999988774 44432211110 00000 00
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
......+.+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. .|
T Consensus 52 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P 119 (208)
T 3urz_A 52 ------ISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EA 119 (208)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT
T ss_pred ------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Confidence 012334558889999999999999999999864 346788899999999999999999999999875 56
Q ss_pred C-hhHHHHHHHHHHhcCC--HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 448 K-SEHYSCMVDLYARAGH--LSEAWDFVERMPEK-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 448 ~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
+ ...+..+..+|...|+ .+.+...++..... |....+.....++...|++++|+..|++++++.|++
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5 6788888888876654 45667777776643 222334445666777899999999999999999974
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=9.2e-08 Score=75.89 Aligned_cols=103 Identities=9% Similarity=0.109 Sum_probs=90.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 444 GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 444 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
-+.|+ ...+......|.+.|++++|++.|++... +.+...|..+..++.+.|++++|+..++++++++|.++..|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35566 45778888999999999999999998764 3567888889999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 521 SSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
++.+|...|++++|.+.+++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999987654
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=1.7e-08 Score=82.90 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFAN 527 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (566)
..+..+...+.+.|++++|+..|++... ..+...|..+..++...|++++|...++++++.+|+++..+..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3445555556666666666666655432 23455555566666666666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHHHhC
Q 042098 528 LKMWDDSAKMRALMREK 544 (566)
Q Consensus 528 ~g~~~~A~~~~~~~~~~ 544 (566)
.|++++|.+.++++.+.
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666666543
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.1e-07 Score=83.26 Aligned_cols=162 Identities=9% Similarity=-0.033 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-HHHHHH----------------HHHHHhhhCcHHHHHHHHHHhH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPN-DVTFIG----------------VLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-~~t~~~----------------ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
.+-.....+...|++++|+..|++..+.. |+ ...+.. +..++...|++++|...|++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN----IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455667789999999999999998854 54 445666 7888999999999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCc
Q 042098 441 SSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKN--TDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 441 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 515 (566)
+. .|+ ...+..+..+|...|++++|+..|++... +.+...|..+...+...|+ .+.+...++++....|. .
T Consensus 82 ~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 157 (208)
T 3urz_A 82 QK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-Q 157 (208)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-H
T ss_pred HH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-h
Confidence 75 565 77899999999999999999999999865 2457788888887766543 44556666665532222 2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
..+..++.++...|++++|+..++++.+..+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34566788888999999999999999887654
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.1e-07 Score=87.77 Aligned_cols=136 Identities=6% Similarity=-0.051 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHH
Q 042098 410 RPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGAL 487 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l 487 (566)
+.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+|.+.|++++|+..++++... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 344566777788889999999999999999876 565 678889999999999999999999999764 665544333
Q ss_pred H-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 488 L-GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 488 ~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
. ..+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+.....
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 3 346677888889999999999999999999999999999999999999999998875543
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=5.9e-07 Score=79.59 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=65.7
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCCh-hHH-----------------HHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----H
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKS-EHY-----------------SCMVDLYARAGHLSEAWDFVERMPEK-VDE----I 482 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~ 482 (566)
.|+.++|...|+++.+. .|+. ... ..+...|.+.|++++|+..|+++... |+. .
T Consensus 109 ~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 45677777777766643 3442 111 34567788999999999999988753 442 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
.+..+..++.+.|+.++|.+.++.+....|++..
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 6777889999999999999999999988887643
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=1.9e-05 Score=78.51 Aligned_cols=367 Identities=8% Similarity=-0.053 Sum_probs=206.1
Q ss_pred C-ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHH
Q 042098 98 Q-KYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK-LDSARK 175 (566)
Q Consensus 98 ~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~ 175 (566)
| +...|..+|+.+... -|. ++.+.+..+|+..+.. .|+...|...+....+.++ .+....
T Consensus 8 ~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred CcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 5 477888888887764 233 8999999999998874 5788899988888777663 344555
Q ss_pred HHhccC------CCChhHHHHHHHHHH----hcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHhcCCCCch-------
Q 042098 176 VFDEIR------ERDLVSWNSMISGYS----KMGYAKEAVELFGRMREEEFLPDE-ITLVSVLGSCGDLGDLV------- 237 (566)
Q Consensus 176 ~~~~~~------~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~------- 237 (566)
+|+... ..+...|...+..+. .+++.+.+..+|++..... ..+. ..|..... +....+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFEN-FELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHH-HHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH-HHHHhccccHHHHHH
Confidence 555433 135677777776544 2456788999999988632 1122 22222211 11111111
Q ss_pred -------hHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC--C-----HHHHHHHHhcCCC---CChhHHHHHHHHHHHcC
Q 042098 238 -------LGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG--A-----LVPARRVFDAMVN---KDVVTWNAMITAYAQNG 300 (566)
Q Consensus 238 -------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 300 (566)
.|..++..+...-...+...|...+..-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 22333332222111112224444444322211 0 2334556665532 24556666666677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHH
Q 042098 301 LSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWN 380 (566)
Q Consensus 301 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 380 (566)
+.++|..++++.... |....+... ++.....+. +++.+.+.-.... .+.+.. .........|.
T Consensus 228 ~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~-----~~~~~~---~~~~~~~~lw~ 290 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGE-----AESAEK---VFSKELDLLRI 290 (493)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC------------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhc-----cchhhh---hcccccHHHHH
Confidence 777777777777765 443322221 111111111 1222222110000 000000 00001134577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh-hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH-AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLY 459 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (566)
..+..+.+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.++- ++..+...++..
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~---~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e 364 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNE---GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTS---CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCC---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 7777777788899999999988 321 2344444322222222 34699999999998886322 244556677777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 460 ARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
.+.|+.+.|..+|+++.. ....|...+.--...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999853 577888888877788999999998888875
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=2.2e-07 Score=77.71 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGAC 491 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 491 (566)
.+..+...+...|++++|...++...+. .| +...+..+...+...|++++|++.+++... ..+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555556666666666666666543 23 355566666666677777777776666543 23466777888888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 543 (566)
...|++++|...++++++..|.+...+..+..+ +...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877554444 8888999999999887653
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=2e-07 Score=79.06 Aligned_cols=130 Identities=8% Similarity=0.070 Sum_probs=103.8
Q ss_pred HHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH-HH
Q 042098 416 FIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGA-CQ 492 (566)
Q Consensus 416 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~-~~ 492 (566)
+......+...|++++|...+++..+. .|+ ...+..+..++...|++++|+..+++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 445566788899999999999988765 555 678899999999999999999999998764 544333222212 12
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 493 KQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
..++...|...++++++.+|+++..+..++.++...|++++|...++++.+.....
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 22333457999999999999999999999999999999999999999999876543
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=8.1e-08 Score=81.59 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=75.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcC
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDL-YARAG 463 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g 463 (566)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+. .| +...+..+..+ +...|
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQAS 93 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcC
Confidence 445566777777777776653 345566666666777777777777777776654 23 34555556666 55666
Q ss_pred CH--HHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 464 HL--SEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 464 ~~--~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
++ ++|+..+++.... .+...+..+...+...|++++|...++++++..|+++..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 66 6666666665432 234555666666666677777777777766666665443
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=2.2e-07 Score=87.95 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...|..+..+|.+.|++++|+..+++... ..+...|..+..++...|++++|...|+++++++|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 36777888888888888888888887754 2467788888999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHH
Q 042098 527 NLKMWDDS-AKMRALM 541 (566)
Q Consensus 527 ~~g~~~~A-~~~~~~~ 541 (566)
..|++++| .++++.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999999 4456655
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=1.8e-06 Score=75.61 Aligned_cols=126 Identities=12% Similarity=-0.037 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcC----ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhh----hCcHHHHHHHHHHhHHhcCCCCC-
Q 042098 378 SWNAMISALAFNG----RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVH----AGLVDEGRRLFDLMSSSFGLIPK- 448 (566)
Q Consensus 378 ~~~~li~~~~~~~----~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~- 448 (566)
++..|...|.. + ++++|+.+|++..+.| +...+..|...|.. .+++++|...|++..+. .|.
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~ 122 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESD 122 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSH
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCc
Confidence 34444444444 4 6777777777776654 45556666666665 66777777777776643 332
Q ss_pred --hhHHHHHHHHHHh----cCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 042098 449 --SEHYSCMVDLYAR----AGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQ-K-----NTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 --~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 512 (566)
+..+..|...|.. .+++++|++.|++.... ++...+..|...|... | +.++|...++++.+.+.
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5666777777777 67788888888776554 4555666666666543 2 78888888888887654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.5e-07 Score=76.62 Aligned_cols=93 Identities=10% Similarity=-0.058 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+...+.+.|++++|+..|++... ..+...|..+..++...|++++|...++++++.+|.++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 333444445555555555555554432 123444555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 042098 529 KMWDDSAKMRALMRE 543 (566)
Q Consensus 529 g~~~~A~~~~~~~~~ 543 (566)
|++++|.+.++++.+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=4.1e-07 Score=71.67 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGA 490 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 490 (566)
...+..+...+...|++++|...++++.+. . +.+...+..+...+.+.|++++|+..++++.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345555666666666666666666666654 1 12345566666666777777777776666543 2356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999999888988888888887776543
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=2.9e-07 Score=73.22 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
...+..+...+...|++++|...+++.... .| +...+..+...+...|++++|++.+++... ..+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 445556666666777777777777776654 23 355666777777777777777777776543 234667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
.+...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999888876
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1.3e-06 Score=76.50 Aligned_cols=80 Identities=11% Similarity=-0.014 Sum_probs=38.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 359 GSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 359 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
|++++|...|++...|+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 20 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp TCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 445555555554444444445555555555555555555555544432 22334444444445555555555555554
Q ss_pred hHH
Q 042098 439 MSS 441 (566)
Q Consensus 439 ~~~ 441 (566)
..+
T Consensus 97 al~ 99 (213)
T 1hh8_A 97 ALI 99 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 128
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=1.7e-07 Score=72.29 Aligned_cols=100 Identities=11% Similarity=0.048 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS--NSGNYVISSKI 524 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 524 (566)
...+..+...+...|++++|...+++... ..+...+..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 55677788888889999999988887654 245677888889999999999999999999999999 99999999999
Q ss_pred HHhC-CChHHHHHHHHHHHhCCCcc
Q 042098 525 FANL-KMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 525 ~~~~-g~~~~A~~~~~~~~~~g~~~ 548 (566)
+... |++++|.+.+++..+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999998876543
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=3.2e-07 Score=82.39 Aligned_cols=182 Identities=8% Similarity=-0.049 Sum_probs=131.0
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHH-------HHHHHHcCChHHHHHHHHHHHhCCCCCCCC----------------
Q 042098 359 GSIDDALKVFEDMP---VTNEVSWNAM-------ISALAFNGRAHEALLLFERMSKEGGAARPN---------------- 412 (566)
Q Consensus 359 ~~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~---------------- 412 (566)
++...|.+.|.+.. +.....|..+ ..++...++..+++..+++-.. +.|+
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~----l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ----ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT----CCGGGGCCEEECCTTTCCCE
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc----CChhhhhhhhccCCcccccc
Confidence 34444444444433 3356678877 4666666666677666666544 2222
Q ss_pred ------HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 042098 413 ------DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDE----I 482 (566)
Q Consensus 413 ------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 482 (566)
......+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122334556788899999999999888743 465436667777889999999999999877655533 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIE--SS-NSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
.+..+..++...|++++|+..|+++..-. |. .+.....++.++.+.|+.++|...|+++......
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 67778899999999999999999998532 43 4457888999999999999999999999876554
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=5.6e-06 Score=82.36 Aligned_cols=103 Identities=10% Similarity=-0.020 Sum_probs=68.6
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhHHHHHHHHHHhcCC-hhHHHH
Q 042098 131 NLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRE--RDLVSWNSMISGYSKMGY-AKEAVE 206 (566)
Q Consensus 131 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~ 206 (566)
+.| +++.|..+|+.+...- |. |+++.+..+|+.... |++..|...+.-..+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4778888888776641 22 889999999998876 788888888877777663 456677
Q ss_pred HHHHhHHC-CCCC-CHHHHHHHHHHhcC----CCCchhHHHHHHHHHHh
Q 042098 207 LFGRMREE-EFLP-DEITLVSVLGSCGD----LGDLVLGKWVEGFVVKN 249 (566)
Q Consensus 207 ~~~~m~~~-~~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 249 (566)
+|+..... |..| +...|...+..+.. .++.+.+..+|+..+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 88776543 4333 55667766766543 35677788888888874
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=3e-07 Score=73.47 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
...+..+...+...|++++|...+++..+. .| +...+..+...|...|++++|++.+++... ..+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344455555555555555555555555432 22 244555555555555566666555555432 134566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCC
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKM 530 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (566)
++...|++++|.+.++++++..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 78888888888888888888888888888888887776653
No 132
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=9.4e-06 Score=74.62 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---
Q 042098 390 GRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD--EGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGH--- 464 (566)
Q Consensus 390 ~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 464 (566)
+++++++.+++++.+.. +-+...|+.-...+...|.++ ++++.++.+.+. . .-|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccch
Confidence 66777888888777754 345566665555556666666 777777777765 2 2234555555555556565
Q ss_pred ---HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhC---CCCchhHHHHHHHHHhCCChHHHH
Q 042098 465 ---LSEAWDFVERMPE--KVDEIVLGALLGACQKQKNT-DVSQRVMQLLLEIE---SSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 465 ---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
++++++.++++.. ..+...|+.+...+.+.|+. +.+..+.+++.+.+ |.++..+..++.+|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 7777777776653 24666777777777666663 33455666665554 777778888888888888888888
Q ss_pred HHHHHHHh
Q 042098 536 KMRALMRE 543 (566)
Q Consensus 536 ~~~~~~~~ 543 (566)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=7.6e-07 Score=77.28 Aligned_cols=154 Identities=9% Similarity=-0.068 Sum_probs=95.5
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhc
Q 042098 387 AFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSF---GLIPK-SEHYSCMVDLYARA 462 (566)
Q Consensus 387 ~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~ 462 (566)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..... +..|. ..++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3456777777744444321 12345566666667777777777777777665521 11221 34566677777777
Q ss_pred CCHHHHHHHHHhCCCC----C-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC----chhHHHHHHHHHh
Q 042098 463 GHLSEAWDFVERMPEK----V-D----EIVLGALLGACQKQKNTDVSQRVMQLLLEIE--SSN----SGNYVISSKIFAN 527 (566)
Q Consensus 463 g~~~~A~~~~~~~~~~----~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~ 527 (566)
|++++|.+.+++.... + + ...+..+...+...|++++|...++++++.. ..+ ...+..++.++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 7777777777664331 2 2 2345666777778888888888888887653 222 2235677888888
Q ss_pred CCChHHHHHHHHHHHh
Q 042098 528 LKMWDDSAKMRALMRE 543 (566)
Q Consensus 528 ~g~~~~A~~~~~~~~~ 543 (566)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 8888888888777653
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2.6e-07 Score=85.01 Aligned_cols=158 Identities=11% Similarity=-0.033 Sum_probs=108.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh-hHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS-EHYS 453 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~ 453 (566)
+...|..+..+|.+.|++++|...+++..+.. +-+...+..+..++...|++++|...|+...+. .|+. ..+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~ 110 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFG 110 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHH
Confidence 45667788888889999999999999988754 345677888888899999999999999888764 3321 1111
Q ss_pred HHHH---HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC-C
Q 042098 454 CMVD---LYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL-K 529 (566)
Q Consensus 454 ~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 529 (566)
..+. ...+...+.. ........+......+ ..+. .|+.++|.+.++++.+.+|++......+...+.+. +
T Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 184 (281)
T 2c2l_A 111 DDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184 (281)
T ss_dssp SHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHH
Confidence 1121 2222222222 2222222333333333 3332 68899999999999999998888777887777776 7
Q ss_pred ChHHHHHHHHHHHhC
Q 042098 530 MWDDSAKMRALMREK 544 (566)
Q Consensus 530 ~~~~A~~~~~~~~~~ 544 (566)
.+++|.++|+++.+.
T Consensus 185 ~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 185 YMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhcc
Confidence 899999999888753
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.7e-07 Score=72.38 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCC
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLK 529 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (566)
+..+...+.+.|++++|+..|++... ..+...|..+..++.+.|++++|+..++++++.+|.++..+..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 34444444555555555555544432 1234455555555555555555555555555555555555555555666666
Q ss_pred ChHHHHHHHHHHHh
Q 042098 530 MWDDSAKMRALMRE 543 (566)
Q Consensus 530 ~~~~A~~~~~~~~~ 543 (566)
++++|.+.++++.+
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666555555544
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.57 E-value=1.9e-07 Score=73.43 Aligned_cols=96 Identities=8% Similarity=-0.125 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+...+.+.|++++|+..|++.... .+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887652 46778888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 042098 529 KMWDDSAKMRALMREKGV 546 (566)
Q Consensus 529 g~~~~A~~~~~~~~~~g~ 546 (566)
|++++|...++++.+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887543
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=4.4e-07 Score=74.24 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLG 489 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 489 (566)
...+..+...+.+.|++++|...|+..... .|+ ...|..+..+|...|++++|+..|++... +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 345666667778888888888888888765 454 66777888888888888888888887754 235677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
++...|++++|...|+++++..|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888999999999999988888754
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=4.3e-07 Score=74.31 Aligned_cols=106 Identities=7% Similarity=-0.038 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 042098 412 NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALL 488 (566)
Q Consensus 412 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 488 (566)
+...+..+...+...|++++|...|+..... .| +...+..+..+|...|++++|++.|++... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 3455666777788888899998888888765 44 466778888888889999999988888754 24567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVI 520 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (566)
.++...|++++|...|+++++..|+++.....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 89999999999999999999998887765433
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=4.5e-06 Score=77.28 Aligned_cols=173 Identities=6% Similarity=-0.085 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHH
Q 042098 288 TWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKV 367 (566)
Q Consensus 288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~ 367 (566)
.+...+..+...|++++|.+.+.+..+.... ..... ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~~---------------------------------------- 114 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-QF---------------------------------------- 114 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-HH----------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-HH----------------------------------------
Confidence 3445566778888999998888887765321 11110 00
Q ss_pred HccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCCC--HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcC
Q 042098 368 FEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGA-ARPN--DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFG 444 (566)
Q Consensus 368 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 444 (566)
...+..+...+...|++++|+..+++..+.... ..+. ..+++.+...|...|++++|...+++..+...
T Consensus 115 --------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 115 --------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp --------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 111233445566677777777777776643200 1111 34667777777777888888777777763211
Q ss_pred CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 042098 445 LIPK-----SEHYSCMVDLYARAGHLSEAWDFVERMPEK--------VDEIVLGALLGACQKQKNTDVS-QRVMQLLLEI 510 (566)
Q Consensus 445 ~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 510 (566)
..|+ ..++..+...|.+.|++++|++.+++...- ....+|..+..++.+.|+.++| ...+++++..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1222 146677777777888888887777765431 1145667777788888888888 7777777654
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=8.1e-08 Score=83.32 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP--------------KSEHYSCMVDLYARAGHLSEAWDFVERMPE--K 478 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 478 (566)
.+..+...+...|++++|...|++..+...-.| ....+..+..+|.+.|++++|+..+++... .
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444555556666666666665554211111 025777788888899999999998887754 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH-HHHHHHHhCC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA-KMRALMREKG 545 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g 545 (566)
.+...+..+..++...|++++|...|+++++..|.+..++..+..++...++.+++. ..+..+...|
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467788888899999999999999999999999999999999999999999888887 5566665443
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=7.3e-07 Score=71.77 Aligned_cols=92 Identities=8% Similarity=-0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANL 528 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (566)
.+..+...+...|++++|+..|++... ..+...|..+..++...|++++|...++++++.+|.++..+..++.+|...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 334444444444444444444443322 122344444444455555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHH
Q 042098 529 KMWDDSAKMRALMR 542 (566)
Q Consensus 529 g~~~~A~~~~~~~~ 542 (566)
|++++|.+.++++.
T Consensus 91 ~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 91 ESYDEAIANLQRAY 104 (137)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555444
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=4e-07 Score=76.10 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 487 (566)
.+...+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..|++... ..+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567888888899999999999999999875 45 477888999999999999999999998765 2457888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
..++...|++++|...|+++++.+|++...+...+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999999988665544
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=7.9e-07 Score=70.98 Aligned_cols=98 Identities=7% Similarity=0.042 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+.+.|++++|++.+++.... .+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 567888999999999999999999987653 467888889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.+++..+...
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCG
T ss_pred HHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999887643
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=3.6e-05 Score=71.13 Aligned_cols=169 Identities=6% Similarity=-0.111 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
..+..+...|++++|..++++..+.. +........
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~------------------------------------------- 114 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQF------------------------------------------- 114 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHH-------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHH-------------------------------------------
Confidence 34667888999999999999887642 211111110
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc---
Q 042098 371 MPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--- 443 (566)
Q Consensus 371 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 443 (566)
...+..+...+...|++++|+..+++...... -.++ ..+++.+...|...|++++|...++++.+..
T Consensus 115 -----~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 115 -----LQWQYYVAAYVLKKVDYEYCILELKKLLNQQL-TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp -----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC-CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 11234455666677788999998888877421 1122 3367888888888999999999988887521
Q ss_pred -CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 042098 444 -GLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE-------KV-DEIVLGALLGACQKQK-NTDVSQRVMQLLLEI 510 (566)
Q Consensus 444 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 510 (566)
+..+. ..++..+...|.+.|++++|++.+++... .+ -..+|..+..++.+.| ++++|.+.+++++..
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 11111 34778888999999999999998887653 11 2567888889999999 569999999999875
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=0.0002 Score=65.85 Aligned_cols=226 Identities=9% Similarity=-0.001 Sum_probs=155.4
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH----hcc---CCh
Q 042098 270 ALVPARRVFDAMVN--K-DVVTWNAMITAYAQNG--LSNEAIMLFNRMKYAGVNPDKITLIGVLSAC----ASI---GAL 337 (566)
Q Consensus 270 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~~ 337 (566)
..++|+++++.+.. | +...|+.--..+...| +++++++.++.+.....+ +...++.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 33566666666533 2 3345666666666666 788888888877764321 222222221111 222 455
Q ss_pred hHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCCCHHH
Q 042098 338 DLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAH--EALLLFERMSKEGGAARPNDVT 415 (566)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~~~p~~~t 415 (566)
+++..+++.+.+.. +.|..+|+--..++.+.|+++ ++++.++++.+.. +-|...
T Consensus 127 ~~EL~~~~~~l~~~---------------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sA 182 (306)
T 3dra_A 127 YREFDILEAMLSSD---------------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHH
Confidence 55555555555433 247778888888888889888 9999999999875 346667
Q ss_pred HHHHHHHHhhhCc------HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHH
Q 042098 416 FIGVLSACVHAGL------VDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSE-AWDFVERMPE-----KVDEI 482 (566)
Q Consensus 416 ~~~ll~~~~~~g~------~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~ 482 (566)
|+.-...+...+. ++++++.++.+... .| |...|+.+...+.+.|+..+ +..+.+++.. ..+..
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 259 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF 259 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence 7665555566665 88999999988865 44 47788888888888888544 5557776553 24677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCchhHHHHHH
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLE-IESSNSGNYVISSK 523 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 523 (566)
.+..+..++.+.|+.++|.++++.+.+ .+|.....|...+.
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 888889999999999999999999997 78988777776544
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=9.6e-07 Score=68.64 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 490 (566)
..+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++.... .+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34445555555666666666666655543 22 3444555555555555555555555554321 234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
+...|++++|...++++.+..|.++..+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555555554444433
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=9.8e-07 Score=69.39 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|.+.++++.. ..+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46788889999999999999999998764 2467788889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987644
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=1e-06 Score=74.66 Aligned_cols=122 Identities=7% Similarity=0.063 Sum_probs=93.7
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH-HHhcCCH--
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGA-CQKQKNT-- 497 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~-- 497 (566)
...|++++|...++..... .| +...+..+...|...|++++|+..|++.... .+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567888888888887765 34 4677888888888899999998888887642 356667777777 6788887
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 498 DVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
++|...++++++.+|.++..+..++.+|...|++++|...++++.+.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 889999999988888888888888889999999999999888888765543
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.3e-05 Score=69.33 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=93.1
Q ss_pred hcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHH
Q 042098 267 KCGALVPARR---VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWV 343 (566)
Q Consensus 267 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 343 (566)
..|++++|.+ .+..-+......+..+...+...|++++|...+++..+.-. ..++..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~----- 63 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ---------------KSGDHT----- 63 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------TTCCHH-----
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH---------------HcCCcH-----
Confidence 4566666666 44433333445666666777777777777777766654100 000000
Q ss_pred HHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CC--CHHHHHHH
Q 042098 344 DKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAA--RP--NDVTFIGV 419 (566)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~p--~~~t~~~l 419 (566)
....++..+...+...|++++|...+++..+.-... .| ....+..+
T Consensus 64 ------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 64 ------------------------------AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 123457777888889999999999988876531001 11 13456677
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
...+...|++++|...+++......-..+ ..++..+...+...|++++|.+.+++.
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 77788889999998888877643111111 223455666666677777666666554
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=6.3e-07 Score=71.12 Aligned_cols=92 Identities=5% Similarity=-0.045 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-------hhHHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS-------GNYVISS 522 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~ 522 (566)
+..+...+.+.|++++|++.|++..+ +.+...|..+..++.+.|++++|++.+++++++.|.+. .+|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444444444555555554444332 12334444455555555555555555555555544332 2344445
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 042098 523 KIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++...|++++|++.+++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=2.2e-06 Score=67.86 Aligned_cols=110 Identities=12% Similarity=-0.090 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 490 (566)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++... ..+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555666677777777777777777654 343 56677777777777777777777776654 2346677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHH
Q 042098 491 CQKQKNTDVSQRVMQLLLEIE------SSNSGNYVISSKIFA 526 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 526 (566)
+...|++++|...++++++.+ |.+..+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888899999999999999888 777777777766543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=2.8e-06 Score=65.90 Aligned_cols=98 Identities=6% Similarity=0.038 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|...+++... +.+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34556666777777777777777776643 2356666667777777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 77777777777777766543
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.9e-06 Score=70.25 Aligned_cols=113 Identities=12% Similarity=-0.075 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVL 484 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 484 (566)
.+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++.... .+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 3456666667777777777777777777764 3455 456666677777777777777777665431 345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 485 GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..+..++...|++++|...++++++..|.+..++..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 666677777777777777777777777777666666655543
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=1.8e-06 Score=70.09 Aligned_cols=105 Identities=7% Similarity=-0.027 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGA 490 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 490 (566)
..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|+..|++... +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 33444555666677777777777776654 34 355666677777777777777777776543 2345566777788
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 491 CQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+...|++++|...++++++..|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8888888888888888888888777665543
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=3.4e-06 Score=68.69 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
...+..+...+...|++++|++.|++.... |+ ...|..+..++...|++++|...++++++..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344455555555555555555555554432 33 3444555555555555555555555555555555555555555
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 042098 524 IFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~ 544 (566)
+|...|++++|.+.+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555443
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=9.3e-07 Score=70.27 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=56.9
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHH
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPK-S---EHYSCMVDLYARAGHLSEAWDFVERMPEK-VD----EIVLGALLG 489 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~ 489 (566)
+...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|+..|++.... |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666654 233 2 35555566666666666666666655431 22 344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 490 ACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
++...|++++|...++++++..|+++......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 66666666666666666666666655444433
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=3.8e-06 Score=70.07 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..+++..+. .|+ ...|..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4456666677777777777777777777653 235566666667777777777777777777654 343 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC
Q 042098 455 MVDLYARAGHLSEAWDFVERMPE 477 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~ 477 (566)
+..+|...|++++|++.|++...
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777777777777766543
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.40 E-value=1.9e-06 Score=68.36 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|...+++... ..+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 56778888999999999999999998764 2467888889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 042098 527 NLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~g~ 546 (566)
..|++++|.+.++++.+...
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999987644
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=1.1e-05 Score=67.20 Aligned_cols=129 Identities=9% Similarity=-0.098 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 454 (566)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 4567888889999999999999999998864 346788888999999999999999999999875 34 4678889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-DEIVLGA--LLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+..++...|++++|.+.+++.... | +...+.. .+..+...|++++|...+++....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999987642 3 4444433 334477889999999999887654
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=4.9e-06 Score=66.78 Aligned_cols=111 Identities=10% Similarity=-0.059 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 487 (566)
.+...+..+...+...|++++|...|+..... .|+ ...+..+..++...|++++|+..+++... +.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34566666666777777777777777776654 333 55666777777777777777777776543 2346677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC-----CchhHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESS-----NSGNYVISSKI 524 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~ 524 (566)
..++...|++++|...++++++..|+ +..+...+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888776 45555555444
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=3.5e-06 Score=68.20 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI-------ESSNSGNY----VISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
..|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37777888888888888888888888888 89888888 88899999999999999998888653
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=1.1e-05 Score=63.77 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHH
Q 042098 453 SCMVDLYARAGHLSEAWDFVERMPE-KVDE----IVLGALLGACQKQKNTDVSQRVMQLLLEIESSN---SGNYVISSKI 524 (566)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 524 (566)
..+...+...|++++|...|+++.. .|+. ..+..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455566677777777777776554 2332 355666677777777777777777777777776 5567777777
Q ss_pred HHhCCChHHHHHHHHHHHhCC
Q 042098 525 FANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~g 545 (566)
+...|++++|.+.++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 777777777777777776543
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=4.1e-06 Score=69.29 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DEI 482 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~ 482 (566)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++.... + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555554432110111 134555666666666666666666654321 1 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 483 VLGALLGACQKQKNTDVSQRVMQLLLEIES------SNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+..+...+...|++++|.+.++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677778888888888888888876532 1245677888999999999999999888765
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=7.8e-06 Score=73.42 Aligned_cols=139 Identities=10% Similarity=-0.080 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCM 455 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l 455 (566)
.+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~L 177 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHH
Confidence 45566788899999999999999988754 65545555566788999999999999855432 1 121 2467788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 042098 456 VDLYARAGHLSEAWDFVERMPEKV-----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSK 523 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (566)
..++.+.|++++|+..|++....| ....+.....++.+.|+.++|...|+++...+|. ..+...|.+
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999999986443 2345667778899999999999999999999998 777666643
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=6.2e-06 Score=81.52 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...|..+..+|.+.|++++|+..+++... ..+...|..+..++...|++++|...|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35777788888888888888888887754 2467788888899999999999999999999999999999999999999
Q ss_pred hCCChHHHHH-HHHHHH
Q 042098 527 NLKMWDDSAK-MRALMR 542 (566)
Q Consensus 527 ~~g~~~~A~~-~~~~~~ 542 (566)
..|+++++.+ .++.|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998875 344443
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=3.3e-06 Score=66.97 Aligned_cols=95 Identities=6% Similarity=0.067 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHH
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN-------SGNYVIS 521 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l 521 (566)
.+..+...+...|++++|...+++... ..+...+..+...+...|++++|...++++++..|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 444555555666666666666655432 1345556666666667777777777777777766554 5667777
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCC
Q 042098 522 SKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+.++...|++++|.+.++++.+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC
Confidence 777777777777777777766543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.26 E-value=4.1e-06 Score=69.71 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCC---------------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGL---------------IPK-SEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
...+......+.+.|++++|+..|+........ .|. ...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566666777778888888887777653100 111 2345555555555555555555555543
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 477 E--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 477 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
. ..+...|..+..++...|++++|...|+++++++|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2 12344555555555555555555555555555555554
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=1.4e-06 Score=68.04 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=40.9
Q ss_pred hCcHHHHHHHHHHhHHhcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGL-IPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQ 501 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 501 (566)
.|++++|+..|++..+. +. .|+ ...+..+..+|...|++++|++.|++.... .+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555432 10 122 334445555555555555555555544321 23344444445555555555555
Q ss_pred HHHHHHHhhCCCCch
Q 042098 502 RVMQLLLEIESSNSG 516 (566)
Q Consensus 502 ~~~~~~~~~~p~~~~ 516 (566)
..++++++..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555555443
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=1.1e-05 Score=63.83 Aligned_cols=106 Identities=9% Similarity=0.020 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCM 455 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 455 (566)
.++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++...+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~ 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH
Confidence 344555555555555555555555555532 223444555555555555555555555554432 111 0111111
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042098 456 VDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESS 513 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (566)
..+|..+..++...|++++|++.|+++++..|+
T Consensus 83 -------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 -------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124555666777778888888888887776654
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=6.8e-06 Score=65.09 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=57.6
Q ss_pred HHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CC----HHHHHHH
Q 042098 417 IGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-----VD----EIVLGAL 487 (566)
Q Consensus 417 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~l 487 (566)
..+...+...|++++|...++..... . +.+...+..+...|...|++++|...+++.... ++ ...+..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL-D-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33344444444444444444444432 1 112334444444444444555444444443321 11 4556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
..++...|++++|.+.++++++..| ++.....+..+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7778888888888888888888777 4666666655544
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=9.4e-06 Score=77.58 Aligned_cols=138 Identities=12% Similarity=-0.043 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
...+..+...+.+.|++++|+..|++..+.- |... .... .+... ...|. ...|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~----------~~~~-------~~~~~---~~~~~~~~~~~n 278 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAE-------DADGA---KLQPVALSCVLN 278 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSC-------HHHHG---GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc----------cccC-------hHHHH---HHHHHHHHHHHH
Confidence 3446666666777777777777777665421 1110 0000 01111 12232 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWD 532 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (566)
+..+|.+.|++++|++.+++.... .+...|..+..++...|++++|...+++++++.|.+..++..+..++...++.+
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987653 457788889999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 042098 533 DSAKM 537 (566)
Q Consensus 533 ~A~~~ 537 (566)
++.+.
T Consensus 359 ~a~k~ 363 (370)
T 1ihg_A 359 DKEKA 363 (370)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.21 E-value=1.4e-06 Score=75.40 Aligned_cols=121 Identities=7% Similarity=-0.013 Sum_probs=93.2
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-C----------------HHHHH
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V-D----------------EIVLG 485 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~----------------~~~~~ 485 (566)
...|+++.+.+.|+..... .......+..+...+.+.|++++|+..|++.... | + ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3456666666666543322 1112456778888999999999999999987542 1 1 26788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8889999999999999999999999999999999999999999999999999999887643
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=2.6e-06 Score=84.64 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=90.0
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 498 (566)
.+.+.|++++|.+.+++..+. .|+ ...+..+..+|.+.|++++|++.+++.... .+...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455677888888888877764 444 667777888888888888888888776542 45678888889999999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHH--HHhCCChHHHHHHHHH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVISSKI--FANLKMWDDSAKMRAL 540 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 540 (566)
+|++.++++++..|.+...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999998873
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=2.5e-06 Score=80.70 Aligned_cols=152 Identities=8% Similarity=-0.065 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCM 455 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 455 (566)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH----SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----hccchh-------hhhcccHHHHHHHHH-----------HHHHHHH
Confidence 556777777888889999999999988874 365442 223344444433221 2367888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHhCCChH
Q 042098 456 VDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI-FANLKMWD 532 (566)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~ 532 (566)
..+|.+.|++++|+..+++... ..+...|..+..++...|++++|...|+++++++|.+..++..+..+ ....+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988764 24677888889999999999999999999999999999999888887 44567788
Q ss_pred HHHHHHHHHHhCCCccC
Q 042098 533 DSAKMRALMREKGVSKT 549 (566)
Q Consensus 533 ~A~~~~~~~~~~g~~~~ 549 (566)
++.+++++|.......+
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 88888888876654433
No 175
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.0012 Score=61.43 Aligned_cols=224 Identities=9% Similarity=-0.011 Sum_probs=150.5
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042098 87 NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYA 165 (566)
Q Consensus 87 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 165 (566)
+.+.....+. +..++|+++++.+...... +..+|+.--..+...+ +++++++.++.++... +-+..+|+.....+.
T Consensus 58 ~~~r~~~~~~-e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKE-EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTT-CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333344444 6778999999999986422 4445666666666677 5999999999999864 446677887777777
Q ss_pred hc-C-CHHHHHHHHhccCCC---ChhHHHHHHHHHHhcCChh--------HHHHHHHHhHHCCCCCCHHHHHHHHHHhcC
Q 042098 166 RC-G-KLDSARKVFDEIRER---DLVSWNSMISGYSKMGYAK--------EAVELFGRMREEEFLPDEITLVSVLGSCGD 232 (566)
Q Consensus 166 ~~-~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 232 (566)
+. + ++++++.+++.+.+. |..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 66 6 889999999998874 5556666555555555566 899999999875433 66677766666666
Q ss_pred CCC-------chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCH--------------------HHHHHHHhcCCC--
Q 042098 233 LGD-------LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGAL--------------------VPARRVFDAMVN-- 283 (566)
Q Consensus 233 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~-- 283 (566)
.+. ++++.......+...+. |...|+.+-..+.+.|.. ....+...++..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 665 46677777777776654 566666666666665543 334444444422
Q ss_pred -------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 284 -------KDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 284 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
++...+..+...|...|+.++|.++++.+.+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34456677778888888888888888887643
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=2.2e-05 Score=74.11 Aligned_cols=128 Identities=7% Similarity=-0.010 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----------------HHHHHHHHHHHhhhCcHHHHHHHHHH
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----------------DVTFIGVLSACVHAGLVDEGRRLFDL 438 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----------------~~t~~~ll~~~~~~g~~~~A~~~~~~ 438 (566)
+...+..+...|.+.|++++|+..|++..+.. |+ ...+..+..++.+.|++++|+..+++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL----EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh----hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678889999999999999999999999864 43 47889999999999999999999999
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 042098 439 MSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVS-QRVMQLLLE 509 (566)
Q Consensus 439 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 509 (566)
..+. .|+ ...+..+..+|...|++++|+..|++... ..+...+..+..++...|+.++| ...++++..
T Consensus 222 al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 222 ALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875 454 77899999999999999999999998765 24567888888999999999988 556777664
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.00027 Score=65.65 Aligned_cols=164 Identities=9% Similarity=-0.043 Sum_probs=97.7
Q ss_pred ChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHH--------HHHHHHHHhHHhcC
Q 042098 375 NEVSWNAMISALAFN-G-RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVD--------EGRRLFDLMSSSFG 444 (566)
Q Consensus 375 ~~~~~~~li~~~~~~-~-~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~ 444 (566)
+..+|+--..++... + ++++++++++++.+.. +-|...|+.-...+.+.|.++ ++++.++++.+. .
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d 197 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D 197 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C
Confidence 455566555555554 5 6777777777777654 334555554444444444444 777777777765 2
Q ss_pred CCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCH------------------
Q 042098 445 LIPKSEHYSCMVDLYARAGH-------LSEAWDFVERMPE--KVDEIVLGALLGACQKQKNT------------------ 497 (566)
Q Consensus 445 ~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~------------------ 497 (566)
.-|...|+.....+.+.++ ++++++.+++... ..+...|+.+-..+.+.|..
T Consensus 198 -p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 198 -GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp -TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred -CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 2245566666666666665 5677777766543 24566666665555555442
Q ss_pred --HHHHHHHHHHHhhC------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 498 --DVSQRVMQLLLEIE------SSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 498 --~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.........+.... +.++.+...|+++|...|+.++|.++++.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 46777888899999999999999999998864
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.16 E-value=9.1e-06 Score=74.57 Aligned_cols=111 Identities=11% Similarity=-0.043 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHH
Q 042098 411 PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGAL 487 (566)
Q Consensus 411 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l 487 (566)
.+...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|++.+++.... .+...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667778888899999999999999998875 45 4778888999999999999999999987753 456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 042098 488 LGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKI 524 (566)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (566)
..++...|++++|...++++++.+|+++..+...+..
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 8999999999999999999999988775444433333
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4.4e-05 Score=74.99 Aligned_cols=165 Identities=7% Similarity=-0.126 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHH----HHHHHHHHHhhhCcHHHHHHHHHHhHHhc---CCCCC-h
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDV----TFIGVLSACVHAGLVDEGRRLFDLMSSSF---GLIPK-S 449 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~ 449 (566)
++..+...|...|++++|.+.+..+.+.-. ..++.. ..+.+-..+...|+.+.|..+++...... +..+. .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMM-QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHH-TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 467788999999999999999988765310 112221 22223333445788999999988776431 22222 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----
Q 042098 450 EHYSCMVDLYARAGHLSEAWDFVERMPE-------K-VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIE---SSN---- 514 (566)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~---- 514 (566)
.++..+...|...|++++|..++++... + .....+..++..|...|++++|..+++++.... +.+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 5788899999999999999999887532 1 234577888899999999999999999998763 222
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 515 SGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
...+..++..+...|++++|.+.+.+..+
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24567788899999999999998877754
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=1.2e-05 Score=62.97 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH
Q 042098 421 SACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNT 497 (566)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 497 (566)
..+.+.|++++|...++...+. .|+ ...+..+..++...|++++|+..|++.... .+...+..+..++...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3444445555555555544433 232 344444445555555555555555444321 2344455555555566666
Q ss_pred HHHHHHHHHHHhhCCCC
Q 042098 498 DVSQRVMQLLLEIESSN 514 (566)
Q Consensus 498 ~~A~~~~~~~~~~~p~~ 514 (566)
++|...++++++.+|.+
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 66666666666555543
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1e-05 Score=61.99 Aligned_cols=99 Identities=12% Similarity=-0.069 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHHHHHHHH
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-V---DEIVLGALLGA 490 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~ 490 (566)
.+..+...+...|++++|...+++..+. . +.+...+..+...+...|++++|++.+++.... | +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL-D-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh-C-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444445555556666666666555543 1 112445555556666666666666666554432 2 35566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhhCCCCc
Q 042098 491 CQKQ-KNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 491 ~~~~-~~~~~A~~~~~~~~~~~p~~~ 515 (566)
+... |++++|.+.++++....|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777666543
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.001 Score=65.15 Aligned_cols=32 Identities=13% Similarity=-0.143 Sum_probs=17.7
Q ss_pred CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 512 SSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
|.+......++..+.- ..+++.+.+.+|...|
T Consensus 353 ~y~~i~l~~la~~l~~--~~~~~E~~l~~lI~~~ 384 (434)
T 4b4t_Q 353 PFECVEISHISKIIGL--DTQQVEGKLSQMILDK 384 (434)
T ss_dssp SCSCEEHHHHHHHHTC--CHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHhCc--CHHHHHHHHHHHHhCC
Confidence 4444444444444332 5667777777776544
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.0012 Score=61.01 Aligned_cols=169 Identities=11% Similarity=-0.019 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc-HHHHHHHHHHhHHhcCCCCCh
Q 042098 373 VTNEVSWNAMISALAFNGR--AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL-VDEGRRLFDLMSSSFGLIPKS 449 (566)
Q Consensus 373 ~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~ 449 (566)
+.+..+|+--..++...++ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.++.+.+. . +-|.
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~ 179 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNY 179 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCH
Confidence 3467788877777777774 899999999999875 4566777666666667777 68999999998876 2 2245
Q ss_pred hHHHHHHHHHHhc--------------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc-----------CCHHHHHH
Q 042098 450 EHYSCMVDLYARA--------------GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQ-----------KNTDVSQR 502 (566)
Q Consensus 450 ~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~ 502 (566)
..|+.....+.+. +.++++++.+.+... +.|...|+-+-..+.+. +.++++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 6666665555554 457888888887764 24666676555555544 45789999
Q ss_pred HHHHHHhhCCCCchhHHHHHHH---HHhCCChHHHHHHHHHHHhCCC
Q 042098 503 VMQLLLEIESSNSGNYVISSKI---FANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.++++++.+|++.-.+..++.. ....|..+++...++++.+.++
T Consensus 260 ~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 260 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 9999999999985554444332 2246888899999998887543
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=1e-05 Score=67.23 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhC--------CCCC-------CC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKE--------GGAA-------RP-NDVTFIGVLSACVHAGLVDEGRRLFDLMS 440 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~~-------~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 440 (566)
..+......+.+.|++++|+..|.+.... .+ . .| +...+..+..++.+.|++++|+..++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKP-GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCT-TSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444455555555555555555555553 00 0 01 11334444445555555555555555554
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 441 SSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 441 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
+. .|+ ...|..+..+|...|++++|+..|++..
T Consensus 91 ~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 33 232 4445555555555555555555555443
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=2.2e-05 Score=58.91 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356677788888888888888998989888888888888888888898999999988888877653
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.7e-05 Score=64.17 Aligned_cols=136 Identities=11% Similarity=0.080 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC----HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC---
Q 042098 376 EVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN----DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--- 448 (566)
Q Consensus 376 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--- 448 (566)
..++..+...+...|++++|...+++..+... -.++ ..++..+...+...|++++|...+++..+...-.++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 34678888999999999999999999876420 0112 246777888899999999999999988764211122
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 449 -SEHYSCMVDLYARAGHLSEAWDFVERMPEK----V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
...+..+...+...|++++|.+.+++.... . ....+..+...+...|++++|.+.++++++...
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 456778889999999999999998876531 1 235667788899999999999999999987643
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=3.2e-06 Score=65.88 Aligned_cols=85 Identities=9% Similarity=0.020 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHH
Q 042098 461 RAGHLSEAWDFVERMPEK----V-DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSA 535 (566)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (566)
..|++++|+..|++.... | +...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777776543 3 24556667777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCC
Q 042098 536 KMRALMREKG 545 (566)
Q Consensus 536 ~~~~~~~~~g 545 (566)
+.+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8887776543
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=2.3e-05 Score=77.30 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=98.6
Q ss_pred HHhhhCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHH
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSF--GLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPE---------KVD-EIVLG 485 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~ 485 (566)
.+...|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++... .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788999988888776542 12222 45788899999999999999988887643 233 46688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCchh---HHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCce
Q 042098 486 ALLGACQKQKNTDVSQRVMQLLLEI-----ESSNSGN---YVISSKIFANLKMWDDSAKMRALMREKGVSKTPGC 552 (566)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 552 (566)
.|...|...|++++|+.+++++++. +|++|.+ ...+..++...|++++|+.++++++++-....|-+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 8999999999999999999999874 6776654 45788889999999999999999987654443433
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.02 E-value=3.2e-05 Score=62.55 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE--------KV-DEIVL----GALLGACQKQKNTDVSQRVMQLLLEIESSNSGN 517 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (566)
.|..+..++.+.|++++|+..+++... .| +...| .....++...|++++|+..|++++++.|.+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 566666666677776666666655432 34 45567 888899999999999999999999999998776
Q ss_pred HHHHH
Q 042098 518 YVISS 522 (566)
Q Consensus 518 ~~~l~ 522 (566)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65553
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00091 Score=67.62 Aligned_cols=153 Identities=8% Similarity=-0.037 Sum_probs=122.3
Q ss_pred ChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC--cHHHHHHHHHHhHHh
Q 042098 375 NEVSWNAMISALAFNGR----------AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG--LVDEGRRLFDLMSSS 442 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~ 442 (566)
+..+|+.--.++...|+ ++++++.++++.+.. +-+...|..-...+.+.+ +++++.+.++++.+.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 44456655555555555 899999999999865 345677777777777888 779999999999976
Q ss_pred cCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc--------------CCHHHHHHHH
Q 042098 443 FGLIP-KSEHYSCMVDLYARAG-HLSEAWDFVERMPEK--VDEIVLGALLGACQKQ--------------KNTDVSQRVM 504 (566)
Q Consensus 443 ~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~--------------~~~~~A~~~~ 504 (566)
.| +...|+.-..++.+.| .++++++.++++.+. -+...|+.....+.+. +.++++.+.+
T Consensus 139 ---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~ 215 (567)
T 1dce_A 139 ---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV 215 (567)
T ss_dssp ---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred ---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHH
Confidence 34 4677777777888888 899999999998874 4677888877766653 5679999999
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhCCChHH
Q 042098 505 QLLLEIESSNSGNYVISSKIFANLKMWDD 533 (566)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (566)
++++..+|.+..+|..+..++.+.+++++
T Consensus 216 ~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 216 QNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999998665
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=2.3e-05 Score=60.59 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (566)
...+..+...|...|++++|+..+++... ..+...|..+..++...|++++|...++++++..|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44555555555555555555555555432 12344455555555555555555555555555544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=3.6e-05 Score=72.68 Aligned_cols=136 Identities=10% Similarity=0.122 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHccCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHH
Q 042098 358 CGSIDDALKVFEDMP--VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRL 435 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 435 (566)
.|++++|...|+... .|+... +...++..++...+ . ...|..+..++.+.|++++|+..
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l---~---------~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV---K---------NPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH---H---------THHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH---H---------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 388889988887654 332211 11222233322211 1 12677778888889999999999
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhC
Q 042098 436 FDLMSSSFGLIP-KSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VD-EIVLGALLGA-CQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 436 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~ 511 (566)
++...+. .| +...|..+..+|...|++++|+..|++.... |+ ...+..+... ....+..+.+...|++++...
T Consensus 253 ~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 253 CNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9888865 45 4678888889999999999999999988753 43 3444444444 234466788888999998888
Q ss_pred CCCc
Q 042098 512 SSNS 515 (566)
Q Consensus 512 p~~~ 515 (566)
|.++
T Consensus 330 p~~~ 333 (338)
T 2if4_A 330 DEGG 333 (338)
T ss_dssp ----
T ss_pred CCCC
Confidence 7764
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.94 E-value=0.00012 Score=58.64 Aligned_cols=113 Identities=6% Similarity=-0.070 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 042098 427 GLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQR 502 (566)
Q Consensus 427 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 502 (566)
+++++|...|++..+. | .|+ .. |...|...+.+++|++.|++..+..+...+..|...|.. .+|.++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3556666666666554 3 122 22 555555555666666666666555566666666666666 667777777
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 042098 503 VMQLLLEIESSNSGNYVISSKIFAN----LKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~ 547 (566)
.|+++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 77777664 456677777777777 77777777777777776653
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=3.8e-05 Score=73.38 Aligned_cols=115 Identities=11% Similarity=0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042098 414 VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQK 493 (566)
Q Consensus 414 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 493 (566)
..+..+...+.+.|++++|+..|++..+. .++.. .....+++.+ ....+...|..+..++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~-----~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK-----LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG-----GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 34555566666677777777777666542 11100 0001111110 001345778888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 494 QKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
.|++++|+..++++++.+|.++.++..++.+|...|++++|.+.++++.+...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999987643
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=1.6e-05 Score=60.90 Aligned_cols=92 Identities=11% Similarity=-0.092 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 042098 448 KSEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN------SGNYV 519 (566)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 519 (566)
+...+..+...+.+.|++++|++.|++... +.+...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345666777778888888888888877654 2456778888888999999999999999999999988 77778
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 042098 520 ISSKIFANLKMWDDSAKMRA 539 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~ 539 (566)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665543
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=4.8e-05 Score=75.13 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
...|..+..++.+.|++++|+..++++++++|.+...|..++.+|...|++++|...++++.+....
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5678889999999999999999999999999999999999999999999999999999999886543
No 197
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.88 E-value=8.9e-05 Score=54.41 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 042098 479 VDEIVLGALLGACQKQKN---TDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSKTPG 551 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 551 (566)
++...+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|...|+++.+.... +|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 456677777777765554 799999999999999999999999999999999999999999999988766 443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=4.5e-05 Score=55.82 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFA 526 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (566)
...+..+...+...|++++|+..+++... ..+...+..+..++...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34556666667777777777777766543 2345667777788888888888888888888888888888888887776
Q ss_pred hCC
Q 042098 527 NLK 529 (566)
Q Consensus 527 ~~g 529 (566)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 199
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.85 E-value=0.0096 Score=55.02 Aligned_cols=230 Identities=9% Similarity=-0.016 Sum_probs=139.2
Q ss_pred hcCCH-HHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042098 267 KCGAL-VPARRVFDAMVNKDV---VTWNAMITAYAQNGL----------SNEAIMLFNRMKYAGVNPDKITLIGVLSACA 332 (566)
Q Consensus 267 ~~g~~-~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 332 (566)
+.|.+ ++|+.+++.+..-|+ .+|+.--..+...+. +++++.+++.+..... -+..+++.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 34443 356777776644322 334433222222222 5677777777766421 23444444444444
Q ss_pred ccCC--hhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCC
Q 042098 333 SIGA--LDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGR-AHEALLLFERMSKEGGAA 409 (566)
Q Consensus 333 ~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~ 409 (566)
+.|. ++.+..+++.+.+... .|..+|+--..++...|. ++++++.+.++++..
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp---------------------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--- 175 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--- 175 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred ccCcccHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---
Confidence 4442 4555555555554332 367777777777777777 588888888888865
Q ss_pred CCCHHHHHHHHHHHhhh--------------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc-----------C
Q 042098 410 RPNDVTFIGVLSACVHA--------------GLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARA-----------G 463 (566)
Q Consensus 410 ~p~~~t~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g 463 (566)
+-|...|+.....+... +.++++++.+...... .|+ ...|+-+-..+.+. +
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHH
Confidence 34555555544444333 4578888888888765 555 55665555555554 4
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 042098 464 HLSEAWDFVERMPE-KVDEIVLGALL-----GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIF 525 (566)
Q Consensus 464 ~~~~A~~~~~~~~~-~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (566)
.++++++.++++.+ .|+. .|..+. .+....|..++....+.++.+++|....-|..+..-+
T Consensus 253 ~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 253 VLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 57888888888765 3554 343322 2223467888999999999999999888888775544
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.0001 Score=56.22 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVS 547 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 547 (566)
+...|..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.++++.+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678888899999999999999999999999999999999999999999999999999999886544
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=1.2e-05 Score=64.95 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=62.1
Q ss_pred hhhCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042098 424 VHAGLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQR 502 (566)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (566)
.+.+.+++|.+.++...+. .|+ ...|..+..++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHH
Confidence 3445566666666666644 343 4555555555555554432222111 2567888
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhCC-----------ChHHHHHHHHHHHhCCC
Q 042098 503 VMQLLLEIESSNSGNYVISSKIFANLK-----------MWDDSAKMRALMREKGV 546 (566)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~ 546 (566)
.|+++++++|++..+|..++.+|...| ++++|.+.|+++.+...
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 888888888888888888888887764 78888888887776544
No 202
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.73 E-value=0.00066 Score=67.27 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=92.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 042098 374 TNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK-SEHY 452 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~ 452 (566)
.+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.+.+++..+. .|+ ...+
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~ 111 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV---KPHDKDAK 111 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCTTHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 367889999999999999999999999999864 345788889999999999999999999999875 444 4455
Q ss_pred HHHHHH--HHhcCCHHHHHHHHH-----------hCCCC-------------CCHHHHHHHHHHHHhcCC--HHHHHHHH
Q 042098 453 SCMVDL--YARAGHLSEAWDFVE-----------RMPEK-------------VDEIVLGALLGACQKQKN--TDVSQRVM 504 (566)
Q Consensus 453 ~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~-------------~~~~~~~~l~~~~~~~~~--~~~A~~~~ 504 (566)
..+..+ +.+.|++++|++.++ +.... .+...+..++..+...+. .+.+..++
T Consensus 112 ~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~ 191 (477)
T 1wao_1 112 MKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQIL 191 (477)
T ss_dssp HHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556555 888999999999998 33220 123445566666666554 34444456
Q ss_pred HHHHh
Q 042098 505 QLLLE 509 (566)
Q Consensus 505 ~~~~~ 509 (566)
.++.+
T Consensus 192 ~~a~e 196 (477)
T 1wao_1 192 VQVKE 196 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00024 Score=51.78 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.+++..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567778888999999999999999999999999999999999999999999999999999987643
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.59 E-value=0.00078 Score=68.11 Aligned_cols=156 Identities=11% Similarity=0.023 Sum_probs=124.0
Q ss_pred HcC-ChHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHhhhCc----------HHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 388 FNG-RAHEALLLFERMSKEGGAARPND-VTFIGVLSACVHAGL----------VDEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 388 ~~~-~~~~A~~~~~~m~~~g~~~~p~~-~t~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
+.| ..++|++.++++.... |+. ..|+.--..+...|+ ++++...++.+.+. .|. ..+|..
T Consensus 40 ~~~~~~eeal~~~~~~l~~n----P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 344 4568899999999854 554 455554455555565 89999999999876 454 667777
Q ss_pred HHHHHHhcC--CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhC-
Q 042098 455 MVDLYARAG--HLSEAWDFVERMPEK--VDEIVLGALLGACQKQK-NTDVSQRVMQLLLEIESSNSGNYVISSKIFANL- 528 (566)
Q Consensus 455 l~~~~~~~g--~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 528 (566)
-..++.+.| +++++++.++++.+. -+...|+.-...+.+.| ..+++.+.++++++.+|.|.++|...+.++.+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 778888899 779999999998763 57788888888888888 899999999999999999999999999998874
Q ss_pred -------------CChHHHHHHHHHHHhCCCccCC
Q 042098 529 -------------KMWDDSAKMRALMREKGVSKTP 550 (566)
Q Consensus 529 -------------g~~~~A~~~~~~~~~~g~~~~~ 550 (566)
+.++++.+.++++.+.......
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 5679999999888876554433
No 205
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.56 E-value=0.013 Score=44.66 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=106.1
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHL 465 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (566)
+.-.|..++..+++.+.... .+..-||-++--....-+-+-..++++.+-+-|.+.+-. -...++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~s-----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS-----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC-
T ss_pred HHHhhhHHHHHHHHHHHcCC-----CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc-
Confidence 45678899999999998764 355667777766666777777788887776544433211 12344455554443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 042098 466 SEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKG 545 (566)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 545 (566)
+....+..+......|+.+.-.+++..++..+|.++.....++.+|.+.|+..+|.+++.++.++|
T Consensus 90 --------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 --------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp --------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 455667778889999999999999999877788889999999999999999999999999999999
Q ss_pred Cc
Q 042098 546 VS 547 (566)
Q Consensus 546 ~~ 547 (566)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.53 E-value=0.0014 Score=52.40 Aligned_cols=113 Identities=9% Similarity=-0.025 Sum_probs=94.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCC
Q 042098 389 NGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR----AGH 464 (566)
Q Consensus 389 ~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 464 (566)
.+++++|+.+|++..+.| .|+.. |...|...+.+++|.+.|++..+. | +...+..|...|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCcc
Confidence 346889999999999887 34444 666677778888999999988875 3 56788888888888 889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042098 465 LSEAWDFVERMPEKVDEIVLGALLGACQK----QKNTDVSQRVMQLLLEIES 512 (566)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 512 (566)
+++|++.|++..+..+...+..|...|.. .+|.++|.+.++++.+.+.
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999998877888889999999988 8999999999999998753
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.0005 Score=67.80 Aligned_cols=127 Identities=9% Similarity=-0.058 Sum_probs=94.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC-----CCCCCCC-HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhc--CCCCC----hh
Q 042098 383 ISALAFNGRAHEALLLFERMSKE-----GGAARPN-DVTFIGVLSACVHAGLVDEGRRLFDLMSSSF--GLIPK----SE 450 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~-----g~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~ 450 (566)
+..+...|++++|+.++++..+. |. -.|+ ..+++.|...|...|++++|..++++...-+ -+.|+ ..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFAD-TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34466789999999999887642 21 1222 4678899999999999999999998876531 12233 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 451 HYSCMVDLYARAGHLSEAWDFVERMPE---------KVDE-IVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
+++.|...|...|++++|+.++++... .|+. .+.+.+..++...+.+++|+.++.++.+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999887653 2433 33455567788889999999999999764
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00033 Score=56.52 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=88.8
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH----------HHHHHHHHHhHHhcCCCCC-hhHHHH
Q 042098 386 LAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLV----------DEGRRLFDLMSSSFGLIPK-SEHYSC 454 (566)
Q Consensus 386 ~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~ 454 (566)
..+.+++++|...+++..+.. +-+...+..+..++...+++ ++|+..|++..+. .|+ ...|..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~ 85 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 456678999999999999975 45678888888888888765 5888888888754 666 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHH
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEKVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDS 534 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (566)
+..+|...|++ .|+... ..|++++|++.|+++++++|++......+ ...++|
T Consensus 86 LG~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~al-------~~~~ka 137 (158)
T 1zu2_A 86 IGNAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSL-------EMTAKA 137 (158)
T ss_dssp HHHHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHTH
T ss_pred HHHHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHhC
Confidence 88888777654 333311 13789999999999999999976433333 223445
Q ss_pred HHHHHHHHhC
Q 042098 535 AKMRALMREK 544 (566)
Q Consensus 535 ~~~~~~~~~~ 544 (566)
-++.-.+...
T Consensus 138 ~el~~~~~~~ 147 (158)
T 1zu2_A 138 PQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHS
T ss_pred HhccCccccc
Confidence 5555555444
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.00055 Score=52.61 Aligned_cols=62 Identities=8% Similarity=-0.012 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 481 EIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
...+..+...+...|++++|+..++++++.+|.+...+..++.+|...|++++|...+++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555555555555555554455555555555555555555544443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.36 E-value=0.00057 Score=50.78 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCCh
Q 042098 455 MVDLYARAGHLSEAWDFVERMPEK-V-DEI-VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMW 531 (566)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (566)
....+.+.|++++|++.+++.... | +.. .+..+..++...|++++|.+.|+++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999998887642 3 456 77888888888999999999999999999988876632 445
Q ss_pred HHHHHHHHHH
Q 042098 532 DDSAKMRALM 541 (566)
Q Consensus 532 ~~A~~~~~~~ 541 (566)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.24 E-value=0.00023 Score=53.03 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHhhhCcHHHHHHHHHHhHHhcCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHhCC
Q 042098 422 ACVHAGLVDEGRRLFDLMSSSFGLIPK-SE-HYSCMVDLYARAGHLSEAWDFVERMP 476 (566)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (566)
.+...|++++|...++...+. .|+ .. .+..+..+|...|++++|++.|++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555443 232 33 44455555555555555555555443
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0016 Score=48.43 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+...+..+..+|...|++++|+..|++..+.. +-+...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677778888888888888888888887754 234566777777888888888888888777654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.00036 Score=67.58 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCc---hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 042098 482 IVLGALLGACQKQKNTDVSQRVMQLLLEI-----ESSNS---GNYVISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.+++.|..+|...|++++|+.+++++++. +|+++ ..+..|+.+|...|++++|..+++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44555555555566666666666555542 23332 344555566666666666666655554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.19 E-value=0.00073 Score=65.56 Aligned_cols=100 Identities=15% Similarity=0.018 Sum_probs=53.7
Q ss_pred HHHHhhhCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHH
Q 042098 420 LSACVHAGLVDEGRRLFDLMSSSF--GLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPE---------KVD-EIV 483 (566)
Q Consensus 420 l~~~~~~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~ 483 (566)
+..+...|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++... .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444555566666666666655321 11222 23555666666666666666666555432 122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCchhHH
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLEI-----ESSNSGNYV 519 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 519 (566)
++.|...|...|++++|+.+++++++. +|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 555566666666666666666666666 355554433
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.0062 Score=56.58 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHhh---hC-----cHHHHHHHHHHh
Q 042098 374 TNEVSWNAMISALA--FNG---RAHEALLLFERMSKEGGAARPN-DVTFIGVLSACVH---AG-----LVDEGRRLFDLM 439 (566)
Q Consensus 374 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~~~p~-~~t~~~ll~~~~~---~g-----~~~~A~~~~~~~ 439 (566)
.+..+|...+.+.. ..+ +..+|..+|++..+.. |+ ...+..+..++.. .+ ........++..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD----P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS----PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45667777776543 223 3577888888888754 55 3444443333321 00 011111111111
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042098 440 SSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSN 514 (566)
Q Consensus 440 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (566)
........+..+|..+...+...|++++|...+++... .|+...|..+...+.-.|+.++|.+.++++..++|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11001122344555555555555666666666655543 2454455455555555666666666666666665554
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.10 E-value=5.6e-06 Score=78.04 Aligned_cols=225 Identities=11% Similarity=0.095 Sum_probs=111.5
Q ss_pred HHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH
Q 042098 58 LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNH 137 (566)
Q Consensus 58 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 137 (566)
+..+.+..|.+.+|++-|-+. .|+..|..+|.+..+. |++++-+..+....+.. -++..=+.|+-+|++.+++.+
T Consensus 60 LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~-~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp HHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTS-SCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHH
Confidence 444444445555554444322 3444455555555555 55555555554443321 122333445555555555443
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCC
Q 042098 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFL 217 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 217 (566)
-.+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.-++ .
T Consensus 135 lEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK------A 196 (624)
T 3lvg_A 135 LEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK------A 196 (624)
T ss_dssp TTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT------C
T ss_pred HHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh------c
Confidence 33322 134444444455555555555555555544432 22233334444444444332211 2
Q ss_pred CCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhHHHHHHH
Q 042098 218 PDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAM---VNKDVVTWNAMIT 294 (566)
Q Consensus 218 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~ 294 (566)
-++.||..+-.+|...+++..|...=-.++-..-. ...++..|...|.+++-+.+++.- .+.....|+-|.-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaI 271 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 271 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 24567777777777777766654432222211111 123566777777777777777765 3346667777776
Q ss_pred HHHHcCCHHHHHHHHHH
Q 042098 295 AYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 295 ~~~~~~~~~~a~~~~~~ 311 (566)
.|++- ++++.++.++.
T Consensus 272 LYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHSS-CTTHHHHHHTT
T ss_pred HHHhc-CHHHHHHHHHH
Confidence 66654 45555554443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.0025 Score=61.75 Aligned_cols=94 Identities=6% Similarity=-0.018 Sum_probs=68.4
Q ss_pred hCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHH
Q 042098 426 AGLVDEGRRLFDLMSSSF--GLIPK----SEHYSCMVDLYARAGHLSEAWDFVERMPE---------KVD-EIVLGALLG 489 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~ 489 (566)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++... .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467777777777665431 22333 35778888888888888888888877643 233 456888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCCchhHH
Q 042098 490 ACQKQKNTDVSQRVMQLLLEI-----ESSNSGNYV 519 (566)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 519 (566)
.|...|++++|+.++++++++ +|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999874 677776544
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.0089 Score=55.52 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHh--hh---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh---cC-C-------HHHHHHH
Q 042098 409 ARPNDVTFIGVLSACV--HA---GLVDEGRRLFDLMSSSFGLIPK-SEHYSCMVDLYAR---AG-H-------LSEAWDF 471 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~--~~---g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 471 (566)
.+.+...|...+++.. .. .+..+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776643 23 3468899999999865 777 3455544444431 11 1 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 472 VERMPE-KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 472 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
...+.. ..+...|..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.++++...++..
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 222221 35777888887777778999999999999999996 46778899999999999999999999998876543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0046 Score=59.93 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHhCCCC------C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCc---hhHH
Q 042098 458 LYARAGHLSEAWDFVERMPEK------V----DEIVLGALLGACQKQKNTDVSQRVMQLLLEI-----ESSNS---GNYV 519 (566)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~ 519 (566)
.+.+.|++++|+.++++.... | ...+++.+..+|...|++++|+.+++++++. +|++| ..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777766654321 1 2345666667777777777777777776653 34333 3455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 042098 520 ISSKIFANLKMWDDSAKMRALMR 542 (566)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~ 542 (566)
.|+.+|...|++++|..+++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66777777777777777766664
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.053 Score=57.74 Aligned_cols=47 Identities=26% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042098 265 YGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK 313 (566)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 313 (566)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445688888888877663 45678888888888888888888777653
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.82 E-value=0.0057 Score=54.36 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCC-CCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHhC-CChHHH
Q 042098 466 SEAWDFVERMPE-KVD---EIVLGALLGACQK-----QKNTDVSQRVMQLLLEIESSN-SGNYVISSKIFANL-KMWDDS 534 (566)
Q Consensus 466 ~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 534 (566)
.+|...+++..+ .|+ ...|..+...|.. .|+.++|.+.|+++++++|+. ..++..+++.++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444432 233 4456666666666 488899999999999988864 88888888888884 888999
Q ss_pred HHHHHHHHhCCCccCCce
Q 042098 535 AKMRALMREKGVSKTPGC 552 (566)
Q Consensus 535 ~~~~~~~~~~g~~~~~~~ 552 (566)
.+++++........+|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 999988888777765654
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.53 E-value=0.81 Score=46.24 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 042098 454 CMVDLYARAGHLSEAWDFVERMPEKV-DEIVL-GALLGACQKQKNTDVSQRVMQLLLE 509 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (566)
-.+....+.|+++.|...|+.|...+ +..-| -=+.+++...|+.++|..+|+.+.+
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344445667777777776665532 11111 1133455566666666666666654
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.24 Score=52.57 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=90.0
Q ss_pred HhcCCHHHHHH-HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHH
Q 042098 266 GKCGALVPARR-VFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVD 344 (566)
Q Consensus 266 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 344 (566)
...+++++|.+ ++..++ +......++..+.+.|..++|+++.+.- ..-+.. ....
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~----~l~~---------- 665 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFEL----ALKV---------- 665 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHH----HHHH----------
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheeh----hhhc----------
Confidence 35678888877 554443 1222366677777888888887665311 111111 1122
Q ss_pred HHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh
Q 042098 345 KYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV 424 (566)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~ 424 (566)
|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+.
T Consensus 666 --------------~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~ 718 (814)
T 3mkq_A 666 --------------GQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHS 718 (814)
T ss_dssp --------------TCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHH
T ss_pred --------------CCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHH
Confidence 56666666665553 567899999999999999999999987743 223344444
Q ss_pred hhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 425 HAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
..|+.+...++-+..... | -++.-..+|.+.|++++|++++.++
T Consensus 719 ~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 719 SFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 466666655554444332 2 1233334455667776666665554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.50 E-value=0.014 Score=43.59 Aligned_cols=70 Identities=14% Similarity=-0.002 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 452 YSCMVDLYARAGHLSEAWDFVERMPE---------KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+..|...+.+.|+++.|...|+.... .+....+..+..++.+.|+++.|...++++++..|+++.+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33455555555555555555544322 13456778888999999999999999999999999987775555
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.0062 Score=48.51 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=72.2
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAG---HLSEAWDFVERMPEK--V--DEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~ 498 (566)
.+....+.+-|.+.... + .++..+...+..++++.+ +.++++.++++.... | ....+-.+.-++.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34567777778776654 4 367888888899999988 677999999887653 3 2445555667889999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+|.+.++.+++.+|++.......
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999987655543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.023 Score=45.26 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHH
Q 042098 392 AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG---LVDEGRRLFDLMSSSFGLIP--KSEHYSCMVDLYARAGHLS 466 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 466 (566)
...+.+.|.+..+.| .++..+...+..++++++ +.++++.+++...+. . .| +...+..|.-+|.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHH
Confidence 445555666655555 356666666666666666 555777777777665 2 24 2445556666777777777
Q ss_pred HHHHHHHhCCC
Q 042098 467 EAWDFVERMPE 477 (566)
Q Consensus 467 ~A~~~~~~~~~ 477 (566)
+|.+.++.+.+
T Consensus 89 ~A~~y~~~lL~ 99 (152)
T 1pc2_A 89 KALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.15 E-value=0.027 Score=42.03 Aligned_cols=67 Identities=9% Similarity=-0.150 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE-------SSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+..-+-.+...+...|+++.|...++++++.. +....++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678889999999999999999999863 34567899999999999999999999999987543
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.61 E-value=0.16 Score=36.81 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 374 TNEVSWNAMISALAFNGR---AHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 374 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456667777777655544 678888888887754 334556666667777788888888888887754
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.56 E-value=0.38 Score=36.72 Aligned_cols=94 Identities=12% Similarity=0.000 Sum_probs=61.0
Q ss_pred hCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHH
Q 042098 426 AGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSE---AWDFVERMPEK--V--DEIVLGALLGACQKQKNTD 498 (566)
Q Consensus 426 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~ 498 (566)
......+.+-+...... |. |+..+-..+..++.+.....+ ++.+++.+... | .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 34444555555554443 32 556666666777777665554 77777776654 2 1223334557888999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHH
Q 042098 499 VSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
+|.+.++.+++.+|.|..+....
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999987665543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.75 Score=37.56 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 042098 266 GKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRM 312 (566)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 312 (566)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455566665555544 23445555555555555555555555543
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.19 Score=51.85 Aligned_cols=53 Identities=6% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 489 GACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
.-|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 55677899999999999999999999999999999999999999999998877
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.90 E-value=1.3 Score=36.20 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=54.6
Q ss_pred HHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHH
Q 042098 163 MYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWV 242 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 242 (566)
.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+....+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566666666666655 3455677777777777777777777766532 12222223334444443333
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 042098 243 EGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVN 283 (566)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 283 (566)
-+.....|- ++.-..++.-.|+++++.++|.+..+
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 333322221 13333445556777777776665543
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.63 E-value=0.34 Score=38.02 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 042098 463 GHLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVIS 521 (566)
Q Consensus 463 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (566)
++.++|.++|+.+.+ +.-...|-....--.+.|++..|.+++.+++.+.|.+...+...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 566666666665532 12255666666666677888888888888888777665544443
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.59 E-value=0.086 Score=46.91 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHh-cCC
Q 042098 429 VDEGRRLFDLMSSSFGLIPK---SEHYSCMVDLYARA-----GHLSEAWDFVERMPE-KV--DEIVLGALLGACQK-QKN 496 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~-~~~ 496 (566)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++... .| +..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4455555555553 3555 44666777777763 777777777777654 24 25556666666666 377
Q ss_pred HHHHHHHHHHHHhhCCC
Q 042098 497 TDVSQRVMQLLLEIESS 513 (566)
Q Consensus 497 ~~~A~~~~~~~~~~~p~ 513 (566)
.+++.+.++++++..|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888776655
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.92 E-value=0.16 Score=38.79 Aligned_cols=83 Identities=10% Similarity=-0.051 Sum_probs=62.2
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhCCChHHHHH
Q 042098 464 HLSEAWDFVERMPE--KVDEIVLGALLGACQKQKNTDV---SQRVMQLLLEIE-S-SNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 464 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
....+.+.|.+... .++..+--.+..++.++.+... ++.+++.+.+.+ | ........|+.++.+.|+|++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444322 3677777778888888886665 889999888876 5 456678889999999999999999
Q ss_pred HHHHHHhCCC
Q 042098 537 MRALMREKGV 546 (566)
Q Consensus 537 ~~~~~~~~g~ 546 (566)
+++.+.+..+
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 9999987544
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.11 E-value=0.00016 Score=68.47 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 042098 187 SWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYG 266 (566)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 266 (566)
.|..|.++....+.+.+|++.|-+. -|+..|..++.++.+.|.++.-...+....+..-+|.+. +.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHH
Confidence 4556666666666666666554221 134455666666666666666666666555544333333 56677777
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 042098 267 KCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNR 311 (566)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 311 (566)
+.+++.+-++++. .||..-...+..-|...|.++.|.-+|..
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 7766554443322 24444444555555555555555544443
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.83 E-value=1.5 Score=34.04 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 446 IPKSEHYSCMVDLYARAGHL---SEAWDFVERMPEK-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
.|+..+--.+..++.+.... .+++.+++.+... | .....-.|.-++.+.|++++|.++.+.+++.+|.|..+-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56667777777788877754 4566777765432 3 2233344557888999999999999999999998865444
Q ss_pred H
Q 042098 520 I 520 (566)
Q Consensus 520 ~ 520 (566)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.71 E-value=2.7 Score=32.34 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHH
Q 042098 358 CGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFD 437 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 437 (566)
+|++......+-.+. .+....+..++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n---~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN---NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc---CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 344444444443333 23345666677788888888888888886543 46778888888888888888888888888
Q ss_pred HhHHhcCC
Q 042098 438 LMSSSFGL 445 (566)
Q Consensus 438 ~~~~~~~~ 445 (566)
+.-++ |+
T Consensus 150 ~AC~k-G~ 156 (172)
T 1wy6_A 150 EACKK-GE 156 (172)
T ss_dssp HHHHT-TC
T ss_pred HHHHh-hh
Confidence 87766 65
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.48 E-value=0.41 Score=45.51 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 042098 484 LGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMR-----EKGVSKTPG 551 (566)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~ 551 (566)
...++..+...|+.+++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+.+. +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677788888888888888888888888888888888888888888888887764 347766554
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.09 E-value=1.1 Score=35.98 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 516 GNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
..-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56677999999999999999998754
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.16 E-value=5.3 Score=37.66 Aligned_cols=163 Identities=9% Similarity=-0.044 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHhhh-CcHHHHHHHHHHhHHhcCCCCChhHH
Q 042098 377 VSWNAMISALAFNGRAHEALLLFERMSKEGGAARPN---DVTFIGVLSACVHA-GLVDEGRRLFDLMSSSFGLIPKSEHY 452 (566)
Q Consensus 377 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~---~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~ 452 (566)
.+...|...|.+.|+.++...++.....--. .-|- ......++..+... +..+.-.++..+..+. . .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~-a-~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS-SISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW-A-KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG-GSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-H-HHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-H-HHHHHHH
Confidence 3567788999999999999999888754310 1122 34466778877663 3344444444444331 0 0111222
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHhCCCC---CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCc
Q 042098 453 ------SCMVDLYARAGHLSEAWDFVERMPEK---VD-----EIVLGALLGACQKQKNTDVSQRVMQLLLEIE---SSNS 515 (566)
Q Consensus 453 ------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~ 515 (566)
..++..|...|++.+|.+++.++... .| ...+..-+..|...++...+..++..+.... +.+|
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 36889999999999999988877542 22 2334445578889999999999999997652 2333
Q ss_pred h----hHHHHHHHHH-hCCChHHHHHHHHHHH
Q 042098 516 G----NYVISSKIFA-NLKMWDDSAKMRALMR 542 (566)
Q Consensus 516 ~----~~~~l~~~~~-~~g~~~~A~~~~~~~~ 542 (566)
. ....-+..+. ..++|.+|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3 3334566777 8999999999877654
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.90 E-value=1.9 Score=34.58 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHhhhCcHHHHHHHHHHhHHh
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPN-------DVTFIGVLSACVHAGLVDEGRRLFDLMSSS 442 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~-------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 442 (566)
+-.-+..+...|.++.|+-+.+.+..... ..|+ ..++..+.+++...|++.+|...|++....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~-~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSN-NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhc-CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44456777888999999888777543210 1233 235677788899999999999999986543
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.60 E-value=0.99 Score=34.61 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 042098 446 IPKSEHYSCMVDLYARAGHL---SEAWDFVERMPEK-V--DEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYV 519 (566)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (566)
.|+..+--.+..++.+.... .+++.+++++... | ....+-.|.-++.+.|++++|.+..+.+++.+|.|..+-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34555555566666666644 3566666655432 3 2333444556777778888888888888888887765444
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.33 E-value=5.4 Score=38.55 Aligned_cols=166 Identities=10% Similarity=0.098 Sum_probs=107.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHh----hhCcHH--HHHHHHHHhHHhc--CCC
Q 042098 375 NEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACV----HAGLVD--EGRRLFDLMSSSF--GLI 446 (566)
Q Consensus 375 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~----~~g~~~--~A~~~~~~~~~~~--~~~ 446 (566)
.......++..|...|+++...+.+.-+.+..+ ..+ .....+++.+. .....+ .-..+.+...... .+.
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk--~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLK--LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSH--HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 456788899999999999999888877665431 222 22333443332 222222 2222222211100 111
Q ss_pred C---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC
Q 042098 447 P---KSEHYSCMVDLYARAGHLSEAWDFVERMPEK--------VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI---ES 512 (566)
Q Consensus 447 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p 512 (566)
. .......|...|...|++.+|.+++..+... --...+...++.|...+|+..|..+++++... .+
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1234467889999999999999999887431 12345666779999999999999999998532 23
Q ss_pred CCc----hhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 513 SNS----GNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 513 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.++ ..+...+..+...++|.+|-+.|.++.+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 332 4667888999999999999998877753
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.40 E-value=4.2 Score=29.32 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
+.-++.+-++.+.... .-|++......+++|.+.+++..|.++|+.++.+.| +...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~D--lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD--LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSS--BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4556777788888888 899999999999999999999999999998887633 335567776653
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.01 E-value=13 Score=33.67 Aligned_cols=167 Identities=11% Similarity=0.044 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHH----HHHhHHCCCCCCHHHHHHHHHHhc
Q 042098 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVEL----FGRMREEEFLPDEITLVSVLGSCG 231 (566)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 231 (566)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677778888999999988643 23456667887766664 455567788889888888887776
Q ss_pred CCCCch-hHHHHHHHHHH----hCC--CchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CC
Q 042098 232 DLGDLV-LGKWVEGFVVK----NKM--DLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQN---GL 301 (566)
Q Consensus 232 ~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~ 301 (566)
.-..-+ .-..+...+++ .|- .-+......+...|.+.|++.+|+..|-.-...+...+..++.-+.+. |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533222 22344444443 322 235667788899999999999999888633322455666555555444 44
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHH
Q 042098 302 SNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYAS 348 (566)
Q Consensus 302 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 348 (566)
..++--.+- ..++ -+...|++..|..++....
T Consensus 184 ~~e~dlf~~--------------RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHH--------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 443321111 1222 2345567777766665543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.50 E-value=3.7 Score=38.91 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSS----SFGLIPKSEHY 452 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~ 452 (566)
+...++..+...|++++|...+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 45667788889999999999999998764 56788999999999999999999999988755 35889987653
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.08 E-value=8.3 Score=30.35 Aligned_cols=58 Identities=12% Similarity=-0.072 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHH
Q 042098 199 GYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYM 257 (566)
Q Consensus 199 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (566)
+++++|.++|+.+++.+-.- ...+..-...-.+.|++..|.+++...+..++.|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 67777888887776542222 44454445555678888888888888888777765443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.76 E-value=24 Score=38.95 Aligned_cols=191 Identities=9% Similarity=0.022 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------HCC--C
Q 042098 260 ALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMK--------------------YAG--V 317 (566)
Q Consensus 260 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--------------------~~g--~ 317 (566)
.++..+...+..+.+.++..-..+ ++..--.+..++...|++++|.+.|.+.. ... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 344455555555555554443333 33333344455666666666666665431 000 0
Q ss_pred CCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHccCCCCChhHHHHHHHHHHHcCChHHHHH
Q 042098 318 NPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFEDMPVTNEVSWNAMISALAFNGRAHEALL 397 (566)
Q Consensus 318 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 397 (566)
..-..-|..++..+.+.+.++.+.++-....+.....+ .+ .....|..+...+...|++++|..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~-----~~-----------~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD-----ED-----------LSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC-----HH-----------HHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC-----hh-----------hHHHHHHHHHHHHHhhCCHHHHHH
Confidence 11234577777888888888888777666665432211 00 012257788888888899999988
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcH------------HHHHHHHHHhHHhc-CCCCChhHHHHHHHHHHhcCC
Q 042098 398 LFERMSKEGGAARPNDVTFIGVLSACVHAGLV------------DEGRRLFDLMSSSF-GLIPKSEHYSCMVDLYARAGH 464 (566)
Q Consensus 398 ~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~------------~~A~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 464 (566)
.+-.+.... --...+..|+..+|..|.. ++..+++..-.+.. .....+.-|..|-.-+...|+
T Consensus 960 aL~~~pd~~----~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 960 ALMVLSTTP----LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp HHHHHHHSS----SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHH----HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 888776643 3455667777766665543 34444443322210 111112345555555566666
Q ss_pred HHHHHHH
Q 042098 465 LSEAWDF 471 (566)
Q Consensus 465 ~~~A~~~ 471 (566)
+..|-.+
T Consensus 1036 yR~AA~v 1042 (1139)
T 4fhn_B 1036 YRDAAAI 1042 (1139)
T ss_dssp TSCHHHH
T ss_pred hHHHHHH
Confidence 6655443
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.43 E-value=17 Score=33.18 Aligned_cols=134 Identities=11% Similarity=0.040 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHH----HHhHHCCCCCCHHHHHHHHHHhc
Q 042098 156 VSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELF----GRMREEEFLPDEITLVSVLGSCG 231 (566)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 231 (566)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...+-++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345667778889999999987533 234566677776665554 55566788888888888887776
Q ss_pred CCCCch-hHHHHHHH----HHHhC--CCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 042098 232 DLGDLV-LGKWVEGF----VVKNK--MDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNG 300 (566)
Q Consensus 232 ~~~~~~-~a~~~~~~----~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 300 (566)
....-+ .-..+... ..+.| ..-+......+...|.+.+++.+|+..|---..+.+..+..++.-+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 655322 12223333 33333 23355666788889999999999998885333333356655555444444
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.85 E-value=0.92 Score=39.74 Aligned_cols=52 Identities=0% Similarity=-0.078 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 492 QKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
.+.|+++.|+......++.+|.|...-..|...++-.|+|+.|.+-++.+.+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544444433
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.84 E-value=26 Score=38.68 Aligned_cols=170 Identities=12% Similarity=0.015 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCccccCCHHHHHHHHcc
Q 042098 291 AMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRGLRHDIFCGSIDDALKVFED 370 (566)
Q Consensus 291 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 370 (566)
.++..+.+.+..+-+.++..-. +-+...--.+-.++...|++++|...|......-...+...........+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666655543321 22333323334456777888888777765432111111111222222222221
Q ss_pred CC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCC
Q 042098 371 MP--VTNEVSWNAMISALAFNGRAHEALLLFERMSKEGGAARPND--VTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 371 ~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (566)
.. ..-..-|.-++..+-+.+.++.+.++-+..++....-.++. ..|..+++++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 11 11234577788888888999998888777665431011211 24677888888999999998888766543 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHH
Q 042098 447 PKSEHYSCMVDLYARAGHLSEA 468 (566)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~A 468 (566)
--......|+..++..|..++-
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhh
Confidence 2356777788777777765543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.44 E-value=12 Score=32.69 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=72.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHH
Q 042098 384 SALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS----EHYSCMVDLY 459 (566)
Q Consensus 384 ~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~ 459 (566)
..+.+.|++++|+..+..-++.. +-|...-..|+..+|-.|++++|..-++...+. .|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH-
Confidence 34557788888888888777764 456666677888888888888888888777654 5553 234444433
Q ss_pred HhcCCHHHHH-HHHHhCCCC----CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCch
Q 042098 460 ARAGHLSEAW-DFVERMPEK----VDEIVLGALLGACQ--KQKNTDVSQRVMQLLLEIESSNSG 516 (566)
Q Consensus 460 ~~~g~~~~A~-~~~~~~~~~----~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~ 516 (566)
+... ++|..-... ....-...++.+.. ..|+.+.|.++-.++.+.-|..+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 122211110 12223334444433 458888888888888877666544
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.71 E-value=40 Score=35.78 Aligned_cols=124 Identities=14% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHH--HHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFI--GVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
++.-++...|+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+... ...++.-...+.-+
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLG 603 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHH
Confidence 33344456788888888888887632 23332222 2334567788887777788877753 22334333444445
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 042098 459 YARAGHLSEAWDFVERMPEK--VDEIVLGALLGACQKQKNT-DVSQRVMQLLLE 509 (566)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~ 509 (566)
+.-.|+.+.+.++++.+... |....-..+.-+....|.. .++...+..+..
T Consensus 604 lI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 604 FVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 55567766667777655443 3333333333333333332 556666666653
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.25 E-value=6.9 Score=30.45 Aligned_cols=65 Identities=6% Similarity=-0.076 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhCCChHHHHHHHHHHHh
Q 042098 479 VDEIVLGALLGACQKQKN---TDVSQRVMQLLLEIESS-NSGNYVISSKIFANLKMWDDSAKMRALMRE 543 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (566)
|+..+--.+..++.++.+ ..+++.+++.+.+..|. .......|+.++.+.|+|++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444432 23445555555554442 233444455555555555555555554443
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.96 E-value=23 Score=32.34 Aligned_cols=130 Identities=13% Similarity=0.088 Sum_probs=80.0
Q ss_pred HHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHH----HHHHHHCCCCCCcccHHHHHHHHHccC
Q 042098 58 LLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKL----YYQMKRLGLKPDNFTYPFVFISCANLL 133 (566)
Q Consensus 58 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~ 133 (566)
+++.+++.+++++|++++-+- ...+.+. |+..-+.++ ++...+.++++|......++..+....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~-~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILASV-----------SQTLLRS-GQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcCHHHHHHHHHHH-----------HHHHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 355567888888888886442 2345566 666655554 455667788888888888888776654
Q ss_pred Chh-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcC
Q 042098 134 ALN-HGVSVHSSVF----KIG--LDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMG 199 (566)
Q Consensus 134 ~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (566)
.-+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-..+++..+..++.-+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 322 2233333333 333 34567777888888888888888887774322223356655554444443
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.84 E-value=44 Score=35.49 Aligned_cols=106 Identities=16% Similarity=0.038 Sum_probs=64.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
+.-+|+..|+.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+. ..|.+..-..+.-+...
T Consensus 566 lglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 566 IALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhc
Confidence 4456778899888888999887642 233444444444555567766677777655543 34555444455555555
Q ss_pred cCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042098 462 AGHL-SEAWDFVERMPEKVDEIVLGALLGACQ 492 (566)
Q Consensus 462 ~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~ 492 (566)
.|.. .+|++++..+...++..+-..-+.++.
T Consensus 641 aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 641 AGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5553 678888888876666555444433333
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.71 E-value=9.2 Score=29.27 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 042098 391 RAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDL 458 (566)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (566)
|.-+..+-++.+...+ +-|++......+++|.+.+|+..|.++|+-++.+. .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~D--lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYD--LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSS--BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc--cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 4456677778887777 89999999999999999999999999999888763 3445567776653
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.30 E-value=12 Score=31.07 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 465 LSEAWDFVERMPEK----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 465 ~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
..++.++|..|..+ .-...|......+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44455555444321 23444444555555555555555555555554
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.87 E-value=11 Score=27.03 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042098 236 LVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYA 315 (566)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 315 (566)
.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555444444443 22222333456778899999999999999999999987754 5788889888888888777
Q ss_pred CCCCCHhHHHH
Q 042098 316 GVNPDKITLIG 326 (566)
Q Consensus 316 g~~p~~~~~~~ 326 (566)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 454444443
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.50 E-value=11 Score=26.95 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=60.4
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 042098 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211 (566)
Q Consensus 132 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 211 (566)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467788888888877653 33333344556778999999999999999999999988754 4778888888888777
Q ss_pred HHCC
Q 042098 212 REEE 215 (566)
Q Consensus 212 ~~~~ 215 (566)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7664
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.28 E-value=12 Score=27.04 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=42.0
Q ss_pred CHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 464 HLSEAWDFVERMPE---KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 464 ~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
+.-+..+-++.+.. -|++....+.+++|.+.+|+..|.++++-+...-.+...+|-.++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 34445555555443 388999999999999999999999999988766444455566553
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.17 E-value=12 Score=26.92 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=58.1
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 235 DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34455555444444443 22222333456778899999999999999999999987754 477888888888878877
Q ss_pred CCCCCCHhHHH
Q 042098 315 AGVNPDKITLI 325 (566)
Q Consensus 315 ~g~~p~~~~~~ 325 (566)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444444
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.01 E-value=12 Score=26.89 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=59.5
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 042098 132 LLALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRM 211 (566)
Q Consensus 132 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 211 (566)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|... +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3467788888888877653 333333444567789999999999999999999999887544 668778887777777
Q ss_pred HHCC
Q 042098 212 REEE 215 (566)
Q Consensus 212 ~~~~ 215 (566)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6654
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.93 E-value=49 Score=34.20 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=46.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHh
Q 042098 383 ISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLM 439 (566)
Q Consensus 383 i~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 439 (566)
...+...|+++-|+.+-++.... .+-+-.||..|...|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567789999999999999885 2345789999999999999999999999887
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.36 E-value=48 Score=33.43 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=79.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 042098 382 MISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYAR 461 (566)
Q Consensus 382 li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (566)
.+....+.|+++.|...|+.|.... .......--+.+++...|+.++|..+|+.+... . ..|..+. ..+
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~---~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~-~fYg~lA--a~~ 359 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----R-GFYPMVA--AQR 359 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----C-SHHHHHH--HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccc---cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C-ChHHHHH--HHH
Confidence 3344456789999999998886532 223444445566777889999999998887631 1 2343332 223
Q ss_pred cCCHHHHHHHHHhCCCCC-CH-H--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHH
Q 042098 462 AGHLSEAWDFVERMPEKV-DE-I--VLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKM 537 (566)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~-~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (566)
.|..-.. .. ....... .. . .-..-+..+...|....|...+..+.+.. ++.-...++......|.++.+...
T Consensus 360 Lg~~~~~-~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 360 IGEEYEL-KI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp TTCCCCC-CC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCC-CC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHH
Confidence 3321000 00 0000000 00 0 11122345667888888888888776532 234445666667777777776654
Q ss_pred HH
Q 042098 538 RA 539 (566)
Q Consensus 538 ~~ 539 (566)
..
T Consensus 436 ~~ 437 (618)
T 1qsa_A 436 TI 437 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.85 E-value=20 Score=28.29 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=30.2
Q ss_pred HHHHHHHHHhh--CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 042098 500 SQRVMQLLLEI--ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGVSK 548 (566)
Q Consensus 500 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 548 (566)
+..+|..+... +......|...+..+...|++++|.++++.-.+.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56666666554 34455566666666777777777777766665554443
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.32 E-value=29 Score=28.62 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=6.2
Q ss_pred ChhHHHHHHHHHHHcC
Q 042098 285 DVVTWNAMITAYAQNG 300 (566)
Q Consensus 285 ~~~~~~~li~~~~~~~ 300 (566)
+...-...+.++.+.|
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333334444443
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.00 E-value=23 Score=27.17 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhhhCc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH
Q 042098 409 ARPNDVTFIGVLSACVHAGL---VDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDE 481 (566)
Q Consensus 409 ~~p~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 481 (566)
-.|+..|--.+..++.++.+ ..+++.+++.+.+. +-.-....+-.|.-++.+.|++++|.+..+.+... |+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 35777776666666666554 55788888888765 31112556667888889999999999988887653 543
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.37 E-value=31 Score=28.45 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCC
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGY 200 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (566)
+..+-...+..+.+.++.+....+.+.+..++...-...+.++.+.++
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333333344444433333333333333444443344444444433
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.54 E-value=29 Score=27.82 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=22.9
Q ss_pred HHHHHHHHHhh--CCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042098 500 SQRVMQLLLEI--ESSNSGNYVISSKIFANLKMWDDSAKMRALMREKGV 546 (566)
Q Consensus 500 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 546 (566)
+..+|..+... +......|...+..+...|++.+|.++++.-++.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34444444443 233444555555555555555555555555444443
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.10 E-value=13 Score=35.63 Aligned_cols=60 Identities=10% Similarity=0.000 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 042098 415 TFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK--SEHYSCMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 415 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
+...+...|.+.|+++.|.+.+.++... -..+. ...+-.+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555543 11222 334444555555555555555554443
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.94 E-value=30 Score=26.58 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 042098 478 KVDEIVLGALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISS 522 (566)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (566)
-|++....+.+.+|.+.+|+..|.++++-....-.+...+|-.++
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 399999999999999999999999999998876444355666653
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.54 E-value=41 Score=28.00 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042098 253 LNFYMGSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIMLFNRMKY 314 (566)
Q Consensus 253 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 314 (566)
++..+-...+.++.+.|+.+....+...+..++...-...+.++.+.+. .++...+..+.+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444555555555554433334444445565555566666666665 345555555544
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.42 E-value=28 Score=30.47 Aligned_cols=108 Identities=12% Similarity=0.086 Sum_probs=45.8
Q ss_pred cCCCchhHHHHhhcCCCCCc----chHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccCChhH
Q 042098 64 DLKDFNYASLLFHQISRPNE----YAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT--YPFVFISCANLLALNH 137 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 137 (566)
+.|+++....+++.-..++. .-++ .+...+.. |+.+ +++.+.+.|..++... -...+...+..|+.+
T Consensus 14 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~-g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~- 86 (285)
T 1wdy_A 14 QNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQM-SRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK- 86 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHT-TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH-
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHc-CCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH-
Confidence 45556555555554432221 1122 23333444 5543 3344444554443221 112233334445543
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhccC
Q 042098 138 GVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEIR 181 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~ 181 (566)
+++.+.+.|..++... -.+.+...+..|+.+-...+++.-.
T Consensus 87 ---~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 87 ---LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp ---HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ---HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 3334444554443211 1123334455666666666665533
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.71 E-value=19 Score=34.45 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHH----
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYS---- 453 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---- 453 (566)
+...+...|.+.|+++.|.+.|.++...-....--...+..+++.+...+++..+...++++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777888888888888888888764310222235566677778888888888888877765433333322211
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 042098 454 CMVDLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~ 475 (566)
.-...+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1112234567777777766543
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.24 E-value=58 Score=26.98 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=71.3
Q ss_pred chhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHH
Q 042098 68 FNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFK 147 (566)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 147 (566)
.+....+++.+..++...-...+..+.+. +.. .+...+..+... +|...-...+.++.+.++.+....+.+ +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~-~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l- 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKI-GDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIK-AL- 90 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHH-HT-
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHH-HH-
Confidence 33444444444555555555555555555 442 233333333332 344444445555555554332222222 22
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 042098 148 IGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVL 227 (566)
Q Consensus 148 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 227 (566)
-.++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-...+
T Consensus 91 --~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 91 --KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp --TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 23455555555666666665544444444445556555555566666555533 3333333322 23334333444
Q ss_pred HHhcCCCC
Q 042098 228 GSCGDLGD 235 (566)
Q Consensus 228 ~~~~~~~~ 235 (566)
.++...++
T Consensus 165 ~aL~~~~~ 172 (211)
T 3ltm_A 165 DALGEIGG 172 (211)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 44444433
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.71 E-value=43 Score=30.91 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKD---VVTWNAMITAYAQNGL--SNEAIMLFNRMKYAGVNPDKITLIGV 327 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l 327 (566)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+...|+-+.......+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 667888889999999999999997763 2234444445544333 45677888888888766554443333
No 279
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.35 E-value=1e+02 Score=29.52 Aligned_cols=183 Identities=10% Similarity=0.020 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH----HHhcC
Q 042098 98 QKYSHSLKLYYQMKRL-----GLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHVSHSLITM----YARCG 168 (566)
Q Consensus 98 ~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~~ 168 (566)
|+++.|++.+-.+.+. +...+......++..|...++++...+.+..+.+..-+. ......+++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4566666665555431 122234445566667777777777666555544322111 1112223322 22222
Q ss_pred C--HHHHHHHHhccCC---C-------ChhHHHHHHHHHHhcCChhHHHHHHHHhHHC--CCCCC---HHHHHHHHHHhc
Q 042098 169 K--LDSARKVFDEIRE---R-------DLVSWNSMISGYSKMGYAKEAVELFGRMREE--EFLPD---EITLVSVLGSCG 231 (566)
Q Consensus 169 ~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~t~~~ll~~~~ 231 (566)
. .+.-..+.+.... . .......|...|-..|++.+|.+++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 2222333333322 1 1123456777888889999998888887532 22111 123444556666
Q ss_pred CCCCchhHHHHHHHHHH----hCCCch--HHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 042098 232 DLGDLVLGKWVEGFVVK----NKMDLN--FYMGSALIDMYGKCGALVPARRVFDAM 281 (566)
Q Consensus 232 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 281 (566)
..+++..|..++..+.. ....|+ ...+...+..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66677666666665432 112222 223445555555666666665555443
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.37 E-value=34 Score=29.10 Aligned_cols=86 Identities=8% Similarity=-0.017 Sum_probs=46.1
Q ss_pred HHHHcCCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHh
Q 042098 91 RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT--YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV--SHSLITMYAR 166 (566)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 166 (566)
...++. |+.+.+..+++.+.+.|..++... -...+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 14 ~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 14 HIAVVQ-GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 344455 777777777777666665544322 122344445556654 4444455665544321 1233444456
Q ss_pred cCCHHHHHHHHhccC
Q 042098 167 CGKLDSARKVFDEIR 181 (566)
Q Consensus 167 ~~~~~~A~~~~~~~~ 181 (566)
.|+.+-+..+++...
T Consensus 89 ~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 89 HRSPTCLRALLDSAA 103 (241)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCC
Confidence 677777766666543
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.96 E-value=1.1e+02 Score=27.53 Aligned_cols=115 Identities=14% Similarity=0.035 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHhHHHHHHHHHhc
Q 042098 258 GSALIDMYGKCGALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEAIML----FNRMKYAGVNPDKITLIGVLSACAS 333 (566)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 333 (566)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456666778888899888886542 3445677887666654 5555667888888888888777655
Q ss_pred cCChh-HHHHHHHHHHHhCCCCccccCCHHHHHHHHccC---CCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 042098 334 IGALD-LGKWVDKYASQRGLRHDIFCGSIDDALKVFEDM---PVTNEVSWNAMISALAFNGRAHEALLLFE 400 (566)
Q Consensus 334 ~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 400 (566)
....+ .-..+.+.+.+ +-... ...++.....+...|.+.|++.+|...|-
T Consensus 105 ~p~~~~~r~~fi~~ai~-----------------WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNN-----------------WSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCTTCTTHHHHHHHHHH-----------------HHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHH-----------------HHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33211 11223333332 11111 12367778888899999999988887663
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.79 E-value=69 Score=27.11 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042098 480 DEIVLGALLGACQKQKNTDVSQRVMQLLLEIE 511 (566)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (566)
-...|......+...|++.+|.++|+..++..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455555555555666666666666665543
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.75 E-value=50 Score=28.79 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=72.6
Q ss_pred cCCCchhHHHHhhcCCCC---CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccH--HHHHHHHHccCChhHH
Q 042098 64 DLKDFNYASLLFHQISRP---NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTY--PFVFISCANLLALNHG 138 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a 138 (566)
..|+.+-+..+++.-..+ +...++.+. ..+.. |+.+ +++.+.+.|..++.... ...+...+..|+.+
T Consensus 48 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~-~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~-- 119 (285)
T 1wdy_A 48 QMSREDIVELLLRHGADPVLRKKNGATPFL-LAAIA-GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK-- 119 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHH-TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH--
T ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHc-CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH--
Confidence 678888777777765433 333334443 33444 6654 45555566765553321 12344445566654
Q ss_pred HHHHHHHHHhCCCCchhH------------HHHHHHHHHhcCCHHHHHHHHhccC-C---CChhHHHHHHHHHHhcCChh
Q 042098 139 VSVHSSVFKIGLDEDDHV------------SHSLITMYARCGKLDSARKVFDEIR-E---RDLVSWNSMISGYSKMGYAK 202 (566)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~------------~~~li~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~ 202 (566)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++... . .+....+.+. ..+..++..
T Consensus 120 --~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~ 196 (285)
T 1wdy_A 120 --ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDS 196 (285)
T ss_dssp --HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTT
T ss_pred --HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccc
Confidence 4555566665554321 1123444556677777776666522 1 1222222222 223345554
Q ss_pred HHHHHHHHhHHCCCCCC
Q 042098 203 EAVELFGRMREEEFLPD 219 (566)
Q Consensus 203 ~a~~~~~~m~~~~~~p~ 219 (566)
...++++.+.+.|..++
T Consensus 197 ~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 197 DVEAITHLLLDHGADVN 213 (285)
T ss_dssp THHHHHHHHHHTTCCSS
T ss_pred hHHHHHHHHHHcCCCCC
Confidence 45555566666655544
No 284
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.56 E-value=44 Score=27.48 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHH
Q 042098 465 LSEAWDFVERMPEKVDE--IVL-----GALLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAK 536 (566)
Q Consensus 465 ~~~A~~~~~~~~~~~~~--~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (566)
++.|+.+++.+...-+. ... ...+..|.+.|.+++|.+++++.....+.+...-..|..+-.+..-+....+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 46677777777654221 111 1233578888888888888888777666665566666666555555555444
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.30 E-value=46 Score=28.17 Aligned_cols=85 Identities=7% Similarity=-0.147 Sum_probs=48.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhccCCC---ChhHHHHHHHHHHhcC
Q 042098 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEIRER---DLVSWNSMISGYSKMG 199 (566)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 199 (566)
.+...+..|+.+....+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +...++. +...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 34455677898888888887777775554321 223455556778888777777654332 2222222 23334566
Q ss_pred ChhHHHHHHHH
Q 042098 200 YAKEAVELFGR 210 (566)
Q Consensus 200 ~~~~a~~~~~~ 210 (566)
+.+-+..+++.
T Consensus 91 ~~~~~~~Ll~~ 101 (241)
T 1k1a_A 91 SPTCLRALLDS 101 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 66554444443
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.18 E-value=50 Score=28.37 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=55.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEGGAARP----NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMV 456 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 456 (566)
--++.+....++++|..++++..+.-...++ +.......+..-.....-.-+..+.+.+. . .++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHH
Confidence 3577888999999999999887542100222 11122223333333333344444444442 1 44566677788
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 042098 457 DLYARAGHLSEAWDFVERM 475 (566)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~ 475 (566)
..+.+.|+-++|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 9999999999999988654
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.07 E-value=2.1e+02 Score=30.75 Aligned_cols=86 Identities=7% Similarity=-0.129 Sum_probs=49.0
Q ss_pred HHHHHhhhCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------------------
Q 042098 419 VLSACVHAGLVDEGRRLFDLMSSSFGLIPKSEHYSCMVDLYARAGHLSEAWDFVERMPEK-------------------- 478 (566)
Q Consensus 419 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 478 (566)
++..|...|..+-+.++.. -++.++..--.+..+|...|++++|...|++.-..
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4555566666665544331 12223333335566677777777777777765321
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042098 479 -----VDEIVLGALLGACQKQKNTDVSQRVMQLLLEI 510 (566)
Q Consensus 479 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (566)
.....|..++..+.+.+-++-+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01124566666677777777777777777754
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.47 E-value=65 Score=24.48 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDV---VTWNAMITAYAQNGL--SNEAIMLFNRMKYAGVNPDKI 322 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 322 (566)
..++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5678888888999999999999876522 233444445544432 456778888888777655443
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.34 E-value=1.2e+02 Score=25.14 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 392 AHEALLLFERMSKEGGAAR-PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 392 ~~~A~~~~~~m~~~g~~~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
...+..+|..|..+| +- --+.-|......+...|++.+|.++|+.-++. +-.|
T Consensus 95 ~~~p~~if~~L~~~~--IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKG--IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHT--SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cCCHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 456666666666555 32 22344555555555566666666666655554 4444
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.64 E-value=85 Score=26.93 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=14.8
Q ss_pred HHHHHcCCCChhHHHHHHHHHHH
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKR 112 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~ 112 (566)
|..+... .++++|.+++++..+
T Consensus 25 LDv~IA~-r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELAR-LRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHH
Confidence 4556666 777777777776654
No 291
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=46.17 E-value=42 Score=24.03 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCChHHHHHhhc--C-CCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChhHHH
Q 042098 42 QIHTQMLINFIQKPNFLLIRIID--L-KDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYSHSL 104 (566)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~--~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 104 (566)
.|.+++.+.|+- +......+.. . .+.+.|.++++.+++.....|..++.++... |+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et-~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDT-GQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHc-CcHHHHH
Confidence 366666666643 2222333332 2 4688899999999888888999999999776 6555443
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.16 E-value=73 Score=29.22 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCC
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKDV---VTWNAMITAYAQNG-LSNEAIMLFNRMKYAGVNPD 320 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~ 320 (566)
..++.-|...|+.++|...++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-+.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 5678888888999999999999976632 12222222222211 23456677777776665443
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.96 E-value=41 Score=28.43 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHhc
Q 042098 162 TMYARCGKLDSARKVFDE 179 (566)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~ 179 (566)
...+..|+.+-+..+++.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 333445555555544443
No 294
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.27 E-value=1.6e+02 Score=25.60 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=10.3
Q ss_pred cCCCChhHHHHHHHHHHhcCC
Q 042098 180 IRERDLVSWNSMISGYSKMGY 200 (566)
Q Consensus 180 ~~~~~~~~~~~li~~~~~~~~ 200 (566)
+..++...-...+.++...|+
T Consensus 137 l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 137 AFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp TTCSCHHHHHHHHHHHHTC--
T ss_pred hhCCCHHHHHHHHHHHHhcCC
Confidence 344555555555555555554
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.10 E-value=28 Score=30.22 Aligned_cols=91 Identities=3% Similarity=-0.161 Sum_probs=51.1
Q ss_pred HHHHcCCCChhHHHHHHHHHHHCCCCCCccc-------HHHHHHHHH--ccCChhHHHHHHHHHHHhC---------CCC
Q 042098 91 RGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT-------YPFVFISCA--NLLALNHGVSVHSSVFKIG---------LDE 152 (566)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~ 152 (566)
...++. |+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +..
T Consensus 10 ~~A~~~-g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 10 FDIVSR-GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHH-TCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHh-CCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344455 888888888887777776665333 234443332 5677777777776544311 000
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 042098 153 DDHVSHSLITMYARCGKLDSARKVFDEIRE 182 (566)
Q Consensus 153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 182 (566)
....-.+.+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 000112234445667888877777775443
No 296
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=42.35 E-value=62 Score=22.81 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCCChHHHHHhhcCCCchhHHHHhhcCCCCCcchHHHHHHHHHcCCCChh
Q 042098 40 VQQIHTQMLINFIQKPNFLLIRIIDLKDFNYASLLFHQISRPNEYAFNVMIRGLTTAWQKYS 101 (566)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 101 (566)
...+.+.+.+.|+-.....-...-.....+.|.++++.++......|..++.++.+. +...
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~-~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHE-GYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc-CHHH
Confidence 456777777777554433333333567778899999998888888899998888877 6433
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.16 E-value=67 Score=26.14 Aligned_cols=108 Identities=6% Similarity=0.019 Sum_probs=45.4
Q ss_pred cCCCchhHHHHhhcCC-C---CCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccCChhH
Q 042098 64 DLKDFNYASLLFHQIS-R---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT--YPFVFISCANLLALNH 137 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 137 (566)
..|+.+....++..-. . +|..-++.|..+ ++. |+.+ +++.+.+.|..++... -...+...+..|+.+-
T Consensus 14 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~-~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 14 NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHN-NDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHH-TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHc-CCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 4566666666665543 1 233333344333 344 5543 4444445555444322 1122333344555544
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhcc
Q 042098 138 GVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEI 180 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~ 180 (566)
+..+++. .+..++... -.+.+...++.|+.+-+..+++.-
T Consensus 88 ~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 88 LAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 4433322 221111110 112233344556666666665543
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.90 E-value=55 Score=25.79 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHh
Q 042098 259 SALIDMYGKCGALVPARRVFDAMVNKD---VVTWNAMITAYAQNGL--SNEAIMLFNRMKYAGVNPDKI 322 (566)
Q Consensus 259 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 322 (566)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 567888888899999999999986652 2233444445544332 456778888888777655443
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.11 E-value=1.2e+02 Score=22.89 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHhHHCCCCCC
Q 042098 158 HSLITMYARCGKLDSARKVFDEIRERD---LVSWNSMISGYSKMGY--AKEAVELFGRMREEEFLPD 219 (566)
Q Consensus 158 ~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 219 (566)
+.++.=|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+.+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456666667777777777777776552 2233444444444332 3456666666666655443
No 300
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=38.39 E-value=1.2e+02 Score=29.57 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=35.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 042098 487 LLGACQKQKNTDVSQRVMQLLLEIESSNSGNYVISSKIFANLKMWDDSAKMRALM 541 (566)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (566)
|.....-....+.|...|.++....|.+...|+.|+.+....|+.-+|.-.+-+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3344444455667777777777777777777777777777777666665554443
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.04 E-value=66 Score=31.38 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----C--HHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 042098 449 SEHYSCMVDLYARAGHLSEAWDFVERMPEKV----D--EIVLG-ALLGACQKQKNTDVSQRVMQLLLEIESSNS 515 (566)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (566)
...++.+++.|...+.++.|..+..+..... + ...|. .+...+.-.+++.+|.+.+..+.+.-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4567778888888888888888888765321 1 12222 234566667788888888888877666543
No 302
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.48 E-value=94 Score=21.00 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=38.3
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 108 YQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 108 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
+.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777766544 34555555554 566777888888777666666666666666666553
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.87 E-value=1e+02 Score=21.93 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=29.3
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 042098 269 GALVPARRVFDAMVNKDVVTWNAMITAYAQNGLSNEA 305 (566)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 305 (566)
...++|.++++.++.+.+.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766765544
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.73 E-value=92 Score=25.27 Aligned_cols=87 Identities=7% Similarity=0.018 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHH
Q 042098 87 NVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV--SHSLITMY 164 (566)
Q Consensus 87 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~ 164 (566)
+.+..+ +.. |+.+....++..-...--..|..-.+ .+...+..|+.+ +.+.+.+.|..++... -.+.+...
T Consensus 7 ~~L~~A-~~~-g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 79 (201)
T 3hra_A 7 GALLEA-ANQ-RDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYA 79 (201)
T ss_dssp THHHHH-HHT-TCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHH-HHh-ccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 334433 345 77777666664321000011222233 344445667654 4445556676554322 12334455
Q ss_pred HhcCCHHHHHHHHhcc
Q 042098 165 ARCGKLDSARKVFDEI 180 (566)
Q Consensus 165 ~~~~~~~~A~~~~~~~ 180 (566)
+..|+.+-+..+++.-
T Consensus 80 ~~~~~~~~~~~Ll~~~ 95 (201)
T 3hra_A 80 GAQGRTEILAYMLKHA 95 (201)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHhcc
Confidence 6778888888887543
No 305
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=35.68 E-value=2.9e+02 Score=27.02 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH----HHHHH-hhCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042098 479 VDEIVLGALLGACQKQKNTDVSQRV----MQLLL-EIESSNSGNYVISSKIFANLKMWDDSAKMRALMREK 544 (566)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (566)
.|......+-.-+...|..++-+++ ++..+ +..|.+......|-..|.+.|++-+|.+++..+-..
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 4444444455555565644333211 11111 223566667778888899999999999998887765
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.78 E-value=64 Score=27.13 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=47.9
Q ss_pred cCCCchhHHHHhhcCCC---CCcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCccc---HHHHHHHHHccCChhH
Q 042098 64 DLKDFNYASLLFHQISR---PNEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT---YPFVFISCANLLALNH 137 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~ 137 (566)
+.|+++....+++.-.. ++....+ .+...++. |+.+ +++.+.+.|..++... -...+...+..|+.+
T Consensus 18 ~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~-~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~- 90 (240)
T 3eu9_A 18 QYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAIN-NRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS- 90 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHT-TCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH-
T ss_pred HcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHh-CCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH-
Confidence 55666666666654322 2222222 33344455 6554 3444444454333221 123344444555544
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhc
Q 042098 138 GVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDE 179 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~ 179 (566)
+++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 91 ---~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 91 ---MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp ---HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ---HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 3344445555443221 11233444556666666666654
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.90 E-value=1.2e+02 Score=23.52 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=7.0
Q ss_pred CChhHHHHHHHHhHHCC
Q 042098 199 GYAKEAVELFGRMREEE 215 (566)
Q Consensus 199 ~~~~~a~~~~~~m~~~~ 215 (566)
+..-.|.++++.+.+.+
T Consensus 35 ~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKF 51 (145)
T ss_dssp SSCCCHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 33334444444444433
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.61 E-value=1.2e+02 Score=23.04 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=37.5
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 109 QMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 109 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 45667777665544 3455555555 677788888888887666666655455566665553
No 309
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.89 E-value=1.3e+02 Score=23.40 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042098 108 YQMKRLGLKPDNFTYPFVFISCANLL-ALNHGVSVHSSVFKIGLDEDDHVSHSLITMYARCGK 169 (566)
Q Consensus 108 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 169 (566)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 446667777666544 3455555555 677788888888887766666665555666666654
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.37 E-value=1.6e+02 Score=22.74 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhh
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHA 426 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~ 426 (566)
..++..+...+..-.|.++++.+.+.+ ...+..|.-..|..+...
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKF--PNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGC--TTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC--CCCChhhHHHHHHHHHHC
Confidence 334444444444445555555555544 333444444444444433
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.90 E-value=2e+02 Score=24.17 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC
Q 042098 429 VDEGRRLFDLMSSSFGLIPK------SEHYSCMVDLYARAGHLSEAWDFVERMPEK-VDEIVLGALLGACQKQKN 496 (566)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 496 (566)
.+.|+.+|+.+.+...+..+ .-.--..+-.|.+.|.+++|.+++++...+ ++..-....+....+..|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
No 312
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.25 E-value=1.6e+02 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=12.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC
Q 042098 381 AMISALAFNGRAHEALLLFERMSKEG 406 (566)
Q Consensus 381 ~li~~~~~~~~~~~A~~~~~~m~~~g 406 (566)
.++..+...+.+-.|.++++.+.+.+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 33444444444444555555554444
No 313
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.64 E-value=2.3e+02 Score=24.02 Aligned_cols=89 Identities=6% Similarity=-0.127 Sum_probs=50.0
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHCCCCCCc-------ccHHHHHHHHHcc---CChhHHHHHHHHHHHhCCCC-------
Q 042098 90 IRGLTTAWQKYSHSLKLYYQMKRLGLKPDN-------FTYPFVFISCANL---LALNHGVSVHSSVFKIGLDE------- 152 (566)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~------- 152 (566)
|...++. |+.+....+++.+.+.|..++. .-.+.|.. .+.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~-g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 6 LFSVVSR-GVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHH-TCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 3444556 8888777788877777765543 23333433 3444 77777777666544432110
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 042098 153 ---DDHVSHSLITMYARCGKLDSARKVFDEIR 181 (566)
Q Consensus 153 ---~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 181 (566)
|..- .+.+...+..|+.+-+..+++.-.
T Consensus 84 ~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 84 TDEFYQG-HSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp CSTTTTT-CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccccC-CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 1111 233444566778877777776643
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.08 E-value=1.4e+02 Score=29.15 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCCh--hHH-HHHHHHHHhcCCHHHHHHHHHhCCCC
Q 042098 413 DVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPKS--EHY-SCMVDLYARAGHLSEAWDFVERMPEK 478 (566)
Q Consensus 413 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (566)
...++.+++.|...+.++.|..+.....--....++. ..| ..+...+.-.+++.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4568899999999999999999998764110001121 222 34567788899999999988876543
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.70 E-value=1.5e+02 Score=23.20 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc--HHHHHHHHHHhHHhcCCC
Q 042098 378 SWNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL--VDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 378 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~--~~~A~~~~~~~~~~~~~~ 446 (566)
..+.++.-|...|+.++|.+.++++.... + -.......+..++-+.++ .+.+..++..+... ++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~--f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~-~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH--F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG--G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc--c-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCc
Confidence 35677888888999999999999884211 1 122333444445554322 45566667666654 443
No 316
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.56 E-value=73 Score=29.27 Aligned_cols=19 Identities=5% Similarity=-0.129 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 042098 262 IDMYGKCGALVPARRVFDA 280 (566)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~ 280 (566)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3344556777766666654
No 317
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.50 E-value=2.2e+02 Score=24.88 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=8.8
Q ss_pred HHHhcCCHHHHHHHHhc
Q 042098 163 MYARCGKLDSARKVFDE 179 (566)
Q Consensus 163 ~~~~~~~~~~A~~~~~~ 179 (566)
..+..|+.+-+.-+++.
T Consensus 101 ~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455555555555544
No 318
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.47 E-value=2.1e+02 Score=22.40 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCC-CCHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCC
Q 042098 395 ALLLFERMSKEGGAAR-PNDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 395 A~~~~~~m~~~g~~~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p 447 (566)
+..+|..|..+| +- --+.-|......+...|++.+|.++|+.-++. +-.|
T Consensus 84 p~~if~~L~~~~--IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHG--IGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp HHHHHHHHHTTT--TTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 666666666666 32 23445555556666667777777777666555 4444
No 319
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.37 E-value=4.8e+02 Score=26.43 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CChhHHHHHHHHHHhc
Q 042098 156 VSHSLITMYARCGKLDSARKVFDEIRE---RDLVSWNSMISGYSKM 198 (566)
Q Consensus 156 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 198 (566)
+| .+|-.+.|+|++++|.++.++... .-...+-..+..|+..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 44 467788899999999998877653 1123566666777643
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.11 E-value=1.5e+02 Score=20.65 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCChhHHHHHHHHHHhcCChh
Q 042098 138 GVSVHSSVFKIGLDEDDHVSHSLITMYARCGKLDSARKVFDEIRERDLVSWNSMISGYSKMGYAK 202 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (566)
...+++.+.+.|+-. ..-+..+- ......++|.++++.+..++..+|..++.++...+...
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345666677666432 22222222 13567888999999998888889999998888877543
No 321
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=28.03 E-value=86 Score=27.23 Aligned_cols=97 Identities=4% Similarity=-0.083 Sum_probs=50.6
Q ss_pred CcchHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCC-------CcccHHHHHHHHH--ccCChhHHHHHHHHHHHhC---
Q 042098 82 NEYAFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKP-------DNFTYPFVFISCA--NLLALNHGVSVHSSVFKIG--- 149 (566)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--- 149 (566)
|..-.+.|..+ ++. |+.+.+..+++...+.+... |..-.+.|..++. +.|+.+-+..+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQ-SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp -CCCHHHHHHH-HHT-TCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CcccchHHHHH-HHc-CCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 33444444444 455 77877777777776655332 3334445555543 3467766666666543211
Q ss_pred ------CC-CchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 042098 150 ------LD-EDDHVSHSLITMYARCGKLDSARKVFDEIR 181 (566)
Q Consensus 150 ------~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 181 (566)
.. .|..-. +-+...+..|+.+-+..+++.-.
T Consensus 88 ~~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCC
Confidence 10 111222 23344456777777777776543
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.94 E-value=71 Score=26.92 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=35.5
Q ss_pred HHcCCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcC
Q 042098 93 LTTAWQKYSHSLKLYYQMKRLGLKPDNFT--YPFVFISCANLLALNHGVSVHSSVFKIGLDEDDHV--SHSLITMYARCG 168 (566)
Q Consensus 93 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~ 168 (566)
.+.. |+.+ +++.+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|
T Consensus 18 A~~~-g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 18 AAEA-GHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp HHHH-TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred HHHc-CcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 3344 5554 4444445555443321 11233334455655433 33344554333211 122344445667
Q ss_pred CHHHHHHHHhcc
Q 042098 169 KLDSARKVFDEI 180 (566)
Q Consensus 169 ~~~~A~~~~~~~ 180 (566)
+.+-+..+++.-
T Consensus 89 ~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 89 HYEVVQYLLSNG 100 (237)
T ss_dssp CHHHHHHHHTTT
T ss_pred CHHHHHHHHhCC
Confidence 776666666553
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.89 E-value=1.8e+02 Score=22.66 Aligned_cols=17 Identities=0% Similarity=-0.064 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHhCCC
Q 042098 236 LVLGKWVEGFVVKNKMD 252 (566)
Q Consensus 236 ~~~a~~~~~~~~~~~~~ 252 (566)
.-.|.++++.+.+.++.
T Consensus 42 ~~sa~ei~~~l~~~~~~ 58 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKN 58 (150)
T ss_dssp CBCHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 33344444444444333
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.59 E-value=2.8e+02 Score=23.43 Aligned_cols=54 Identities=6% Similarity=-0.056 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHccCChhHHHHHHHHHHHhCCCCch
Q 042098 101 SHSLKLYYQMKRLGLKPDN-FTYPFVFISCANLLALNHGVSVHSSVFKIGLDEDD 154 (566)
Q Consensus 101 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 154 (566)
+.+.++|..|...|+-... ..|..-...+...|++.+|.++|+.-++.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4566777777776655433 33555556666677777777777777777666643
No 325
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.42 E-value=3.7e+02 Score=24.74 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC--cHHHHHHHHHHhHHhcCCCC
Q 042098 379 WNAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG--LVDEGRRLFDLMSSSFGLIP 447 (566)
Q Consensus 379 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p 447 (566)
.+.++.-|...|+.++|.+.++++..-. +.+ ......+..++-+.+ ..+....++..+... |+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~--fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH--FHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT--CHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc--chH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCC
Confidence 5667777778888888888888774311 111 223334444444433 234566666666654 4433
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.13 E-value=1.5e+02 Score=23.55 Aligned_cols=57 Identities=4% Similarity=-0.068 Sum_probs=25.4
Q ss_pred HHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Q 042098 212 REEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKN--KMDLNFYMGSALIDMYGKCG 269 (566)
Q Consensus 212 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 269 (566)
++.|.+++.. -..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3444444332 123334444444445555555555555 44444433333444444444
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.30 E-value=3.7e+02 Score=24.06 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Q 042098 189 NSMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKC 268 (566)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 268 (566)
..+|.-|...|+.++|...++++......|.......-...=.+...-+.+-.++..+. .++-+.......+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CCHH-------------HHHHHHhcCCCCC--------------------------------------------------
Q 042098 269 GALV-------------PARRVFDAMVNKD-------------------------------------------------- 285 (566)
Q Consensus 269 g~~~-------------~A~~~~~~~~~~~-------------------------------------------------- 285 (566)
.+.. -|..+.+.+..+.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-cCChhHHHHHHHHHHHhCC
Q 042098 286 VVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACAS-IGALDLGKWVDKYASQRGL 352 (566)
Q Consensus 286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~ 352 (566)
....+.++.-|...|+.++|.+.++++......+..+.....+..=.+ ....+....++..+.+.|+
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.25 E-value=1.1e+02 Score=25.63 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=9.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC
Q 042098 297 AQNGLSNEAIMLFNRMKYAGVNPD 320 (566)
Q Consensus 297 ~~~~~~~~a~~~~~~m~~~g~~p~ 320 (566)
+..|+.+ +++.+.+.|..++
T Consensus 180 ~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 180 CDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHTTCHH----HHHHHHHTTCCSC
T ss_pred HHCCCHH----HHHHHHHCCCCCC
Confidence 4455543 3344445565554
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.57 E-value=3e+02 Score=22.73 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHccCCC-CChh-------HHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 042098 358 CGSIDDALKVFEDMPV-TNEV-------SWNAMISALAFNGRAHEALLLFERMSKE 405 (566)
Q Consensus 358 ~~~~~~A~~~~~~~~~-~~~~-------~~~~li~~~~~~~~~~~A~~~~~~m~~~ 405 (566)
..-++.|..+|+.+.. .+.. .--..+..|.+.|.+++|.++|++....
T Consensus 91 lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 91 ITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp CCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4557888888888872 2211 1223445677888888888888886543
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.33 E-value=1.2e+02 Score=24.00 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCCCHHHHHHHHHHHhhhC
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKE--GGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~--g~~~~p~~~t~~~ll~~~~~~g 427 (566)
..++..+...+++-.|.++++.+.+. + ...+..|.-.-|..+...|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~--~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPD--LNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGG--GCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHCC
Confidence 33444444444455555555555544 3 3334444433444444433
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.13 E-value=2.8e+02 Score=22.89 Aligned_cols=43 Identities=9% Similarity=-0.038 Sum_probs=20.1
Q ss_pred cCCCchhHHHHhhc-CC---CCCcchHHHHHHHHHcCCCChhHHHHHHH
Q 042098 64 DLKDFNYASLLFHQ-IS---RPNEYAFNVMIRGLTTAWQKYSHSLKLYY 108 (566)
Q Consensus 64 ~~g~~~~A~~~~~~-~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 108 (566)
+.|+.+....+++. -. .+|..-++.|. ..+.. |+.+-+..+++
T Consensus 12 ~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~-~A~~~-g~~~~v~~Ll~ 58 (232)
T 2rfa_A 12 KENDVQALSKLLKFEGCEVHQRGAMGETALH-IAALY-DNLEAAMVLME 58 (232)
T ss_dssp HTTCHHHHHHHHTTTCSCTTCCCTTSCCHHH-HHHHT-TCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHc-CCHHHHHHHHH
Confidence 45666666666654 11 23333344443 33344 66554444444
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.10 E-value=2.5e+02 Score=21.75 Aligned_cols=61 Identities=5% Similarity=0.065 Sum_probs=35.6
Q ss_pred HHhHHCCCCCCHHHHHHHHHHhcCCC-CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCC
Q 042098 209 GRMREEEFLPDEITLVSVLGSCGDLG-DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCGA 270 (566)
Q Consensus 209 ~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 270 (566)
+.|++.|+.++..=. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345666766654433 3444444444 566677788777777666665554445555555553
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.47 E-value=1.7e+02 Score=22.61 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhC
Q 042098 380 NAMISALAFNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAG 427 (566)
Q Consensus 380 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g 427 (566)
..++..+...+ .-.|.++++.+.+.+ ...+..|.-.-|..+...|
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~--~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTA--SGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhC--CCCCHhHHHHHHHHHHHCC
Confidence 33444444444 455666666666555 3445555444444444443
No 334
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.07 E-value=2.9e+02 Score=22.02 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCC-CHHHHHHHHHHHhhhCcHHHHHHHHHHhHHhcCCCCC
Q 042098 395 ALLLFERMSKEGGAARP-NDVTFIGVLSACVHAGLVDEGRRLFDLMSSSFGLIPK 448 (566)
Q Consensus 395 A~~~~~~m~~~g~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 448 (566)
...+|..|..+| +-- -+..|......+...|++.+|.++|+.-++. +-.|-
T Consensus 79 p~~if~~L~~~~--IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQG--IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp HHHHHHHHHHTT--SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHHHHCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 455666666665 322 3444555555566666777777777666655 44443
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.89 E-value=91 Score=19.84 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 042098 100 YSHSLKLYYQMKRLGLKPDNFTYPFVFISC 129 (566)
Q Consensus 100 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 129 (566)
.++|...|.+|.+..-.+...||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776644344567788887777
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.85 E-value=3.7e+02 Score=23.15 Aligned_cols=19 Identities=0% Similarity=0.017 Sum_probs=8.4
Q ss_pred CCCChhHHHHHHHHHHhcC
Q 042098 181 RERDLVSWNSMISGYSKMG 199 (566)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~ 199 (566)
..++...-...+.++.+.|
T Consensus 64 ~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp TCSSHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHHHHHhc
Confidence 3344444444444444444
No 337
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.46 E-value=3.5e+02 Score=22.34 Aligned_cols=61 Identities=23% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc-----HHHHHHHHHHhHHhcCC
Q 042098 382 MISALA---FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL-----VDEGRRLFDLMSSSFGL 445 (566)
Q Consensus 382 li~~~~---~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~~~ 445 (566)
+|+++. +-.+.+.|+-++.+|++.| ..|....-..++-+...-|. ...|...++....- |.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~G--EDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAG--GDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRV-GA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-CC
Confidence 445544 4578999999999999999 66776666666666665554 34455555544443 53
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.44 E-value=1.7e+02 Score=22.05 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHhcCCC
Q 042098 190 SMISGYSKMGYAKEAVELFGRMREEEFLPDEITLVSVLGSCGDLG 234 (566)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 234 (566)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555666677777777777665556666555555554444
No 339
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.29 E-value=3.9e+02 Score=24.93 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhcc
Q 042098 125 VFISCANLLALNHGVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEI 180 (566)
Q Consensus 125 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~ 180 (566)
.+...+..|+.+-+..+ .+.|..++... ..+.+...+..|+.+-+..+++.-
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 70 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 34445566766544444 44455544321 123344455667777666666543
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.26 E-value=1.9e+02 Score=19.33 Aligned_cols=59 Identities=5% Similarity=0.071 Sum_probs=33.3
Q ss_pred HhHHCCCCCCHHHHHHHHHHhcCCC-CchhHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Q 042098 210 RMREEEFLPDEITLVSVLGSCGDLG-DLVLGKWVEGFVVKNKMDLNFYMGSALIDMYGKCG 269 (566)
Q Consensus 210 ~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 269 (566)
.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..+....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3556666665543 34445555443 45566677777766665555555555555555554
No 341
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.94 E-value=1.9e+02 Score=25.34 Aligned_cols=13 Identities=0% Similarity=-0.097 Sum_probs=5.0
Q ss_pred hcCCHHHHHHHHh
Q 042098 267 KCGALVPARRVFD 279 (566)
Q Consensus 267 ~~g~~~~A~~~~~ 279 (566)
..|+.+-+.-+++
T Consensus 138 ~~~~~~~v~~Ll~ 150 (285)
T 3kea_A 138 MLNDVSIVSYFLS 150 (285)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHh
Confidence 3344443333333
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.70 E-value=4.5e+02 Score=23.35 Aligned_cols=263 Identities=13% Similarity=0.069 Sum_probs=120.9
Q ss_pred cCCCchhHHHHhhcCCCCCcc----hHHHHHHHHHcCCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHHccCChhH
Q 042098 64 DLKDFNYASLLFHQISRPNEY----AFNVMIRGLTTAWQKYSHSLKLYYQMKRLGLKPDNFT--YPFVFISCANLLALNH 137 (566)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 137 (566)
+.|+++.+..+++.-..+|.. -++.|. ..++. |+.+ +.+.+.+.|..|+... ....+......+....
T Consensus 34 ~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh-~A~~~-g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 107 (337)
T 4g8k_A 34 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLH-NAVQM-SRED----IVELLLRHGADPVLRKKNGATPFILAAIAGSVKL 107 (337)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH-HHHHT-TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHCCCCCCccCCCCCcCHHH-HHHHc-CCHH----HHHHHHHcCCchhhhccCCCchhHHHHhcccchh
Confidence 788888888888765444322 233443 33445 6654 4444555665544321 1111222222233222
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhccCCCC-------------hhHHHHHHHHHHhcCChh
Q 042098 138 GVSVHSSVFKIGLDEDDHV--SHSLITMYARCGKLDSARKVFDEIRERD-------------LVSWNSMISGYSKMGYAK 202 (566)
Q Consensus 138 a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~ 202 (566)
.. .....+..++... -.+-+...+..|..+.+..+++.-...+ ..-.+.| ...++.|+.+
T Consensus 108 ~~----~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L-~~A~~~g~~~ 182 (337)
T 4g8k_A 108 LK----LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-MDAAEKGHVE 182 (337)
T ss_dssp HH----HHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH-HHHHHHTCHH
T ss_pred hH----HhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH-HHHHHCCCHH
Confidence 22 2223332222110 0112334456677777776665432211 0111223 3334567665
Q ss_pred HHHHHHHHhHHCCCCCCHH---HHHHHHHH--hcCCCCchhHHHHHHHHHHhCCCchHHH--HHHHHHHHHhcCCHHHHH
Q 042098 203 EAVELFGRMREEEFLPDEI---TLVSVLGS--CGDLGDLVLGKWVEGFVVKNKMDLNFYM--GSALIDMYGKCGALVPAR 275 (566)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~---t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~ 275 (566)
-+..++++ .|..++.. -.+.+..+ ....++ ...+.+.+.+.|..++... -.+-+...+..|+.+.+.
T Consensus 183 ~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~~~~~---~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 183 VLKILLDE---MGADVNACDNMGRNALIHALLSSDDSD---VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHSCTTT---HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHhc---cCCCcCccCCCCCcHHHHHHHHcCccc---HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence 44444332 34433321 11112221 222233 3344455677776654321 123445566788888888
Q ss_pred HHHhcC-C---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 042098 276 RVFDAM-V---NKDVVTWNAMITAYAQNGLSNEAIMLFNRMKYAGVNPDKITLIGVLSACASIGALDLGKWVDKYASQRG 351 (566)
Q Consensus 276 ~~~~~~-~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 351 (566)
.++..- . ..|..-++.|..+ ++.|+.+ +.+.+.+.|..++..+ .+..+ ++.|+.+ +.+.+.+.|
T Consensus 257 ~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~L~~A-~~~~~~~----iv~~Ll~~G 324 (337)
T 4g8k_A 257 RLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--LVMTA-RRNYDHS----LVKVLLSHG 324 (337)
T ss_dssp HHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--HHHHH-HHTTCHH----HHHHHHHTT
T ss_pred HHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--HHHHH-HHcCCHH----HHHHHHHCc
Confidence 777642 1 1232223344333 4566654 4455567888877655 33333 3445544 455666677
Q ss_pred CCCc
Q 042098 352 LRHD 355 (566)
Q Consensus 352 ~~~~ 355 (566)
-.++
T Consensus 325 A~~d 328 (337)
T 4g8k_A 325 AKED 328 (337)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 5544
No 343
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.29 E-value=4.7e+02 Score=23.47 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=50.6
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH----HhcCCHHHHHHHHhc
Q 042098 206 ELFGRMREEEFLPDEITLVSVLGSCGDLGDLVLGKWVEGFVVKNKMDLNFYMGSALIDMY----GKCGALVPARRVFDA 280 (566)
Q Consensus 206 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~ 280 (566)
++++.+.+.|+.|...++..++..+++.=.++.+.++++.+...|...-..+.-+++..+ ....+.++....+..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 456667777888888888888888887777888889998888887664333333333322 223466666666665
No 344
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.16 E-value=3.8e+02 Score=22.34 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhCc-----HHHHHHHHHHhHHhcCCC
Q 042098 381 AMISALA---FNGRAHEALLLFERMSKEGGAARPNDVTFIGVLSACVHAGL-----VDEGRRLFDLMSSSFGLI 446 (566)
Q Consensus 381 ~li~~~~---~~~~~~~A~~~~~~m~~~g~~~~p~~~t~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~~~~ 446 (566)
-+|+++. +-.+++.|+-++.+|++.| ..|....-..++-+...-|. ...|...++....- |.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~G--EDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAG--EDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCC
Confidence 3455554 4578999999999999999 67777666666666666554 34555555555444 653
Done!