BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042099
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 73.9 bits (180), Expect = 9e-13, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 97 KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKN 156
K +KTF DD+ L I +L K E + ++ + + S CLNELV+I E K +
Sbjct: 38 KGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRF 97
Query: 157 GQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSG 213
Q VIP+FY ++ Q+ F AF EHE +K+ E +Q+WR L +A+ L G
Sbjct: 98 KQTVIPIFYDVDPSHVRNQKESF-AKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 62.8 bits (151), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 86 DVR--LNSHAL--CRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTL 141
DVR SH L R TFIDD E+ + I P+LL + +I ++ K + ST
Sbjct: 22 DVRDSFLSHLLKELRGKAITFIDD-EIERSRSIGPELLSAIKESRIAIVIFSKNYASSTW 80
Query: 142 CLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKW 201
CLNELVEI + Q VIP+F+H E++ Q F G F E + E + Q W
Sbjct: 81 CLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEF-GKVFEETCKAKSEDEK--QSW 137
Query: 202 REELTDASRLSGF 214
++ L + ++G+
Sbjct: 138 KQALAAVAVMAGY 150
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 93 ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152
A+ ++ FID E+ + + +L + ++ V+ K + S CL+EL EI +
Sbjct: 36 AMREANINVFIDKDEVVGTDLV--NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDC 93
Query: 153 KRKNGQFVIPVFYH---GTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDAS 209
+ G IP+FY +V EL+G GD F + +K PE QKW+E L
Sbjct: 94 INQGGLNAIPIFYKLAPSSVLELKGG----FGDTFRVLKEKYKNDPERTQKWQEALESIP 149
Query: 210 RLSGFRF 216
+L G R
Sbjct: 150 KLKGLRL 156
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 86 DVRLN--SHALCR---KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140
DVR N SH L K + TF DD +++ I +L KI V+ + + S+
Sbjct: 21 DVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISVVLFSENYASSS 79
Query: 141 LCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQK 200
CL+EL+EI + K + G V+PVFY +++ Q FG E + E
Sbjct: 80 WCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL---ETCCGKTEERQHN 136
Query: 201 WREELTDASRLSG 213
WR LTDA+ + G
Sbjct: 137 WRRALTDAANILG 149
>sp|Q3URU2|PEG3_MOUSE Paternally-expressed gene 3 protein OS=Mus musculus GN=Peg3 PE=1 SV=1
Length = 1571
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 27/82 (32%)
Query: 6 PHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSS 65
PH HG H+ HG H HG HG H HG H
Sbjct: 987 PHDDKPHGQEPHDDKPHGQEPHDDKPHGQEPHGDEPHGQEPHGDEPHDKEPIDQEMRSEE 1046
Query: 66 AHELSAHGLSAHRKSAHGNNDV 87
H +HG H + +HG V
Sbjct: 1047 PHSEESHGDEPHGEESHGQEKV 1068
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 1 AHRLSPHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFST-----HGSSAHGLF 55
H PH HG H+ HG HG HG HG H+ H
Sbjct: 992 PHGQEPHDDKPHGQEPHDDKPHGQEPHGDEPHGQEPHGDEPHDKEPIDQEMRSEEPHSEE 1051
Query: 56 SHGLSAHGSSAH 67
SHG HG +H
Sbjct: 1052 SHGDEPHGEESH 1063
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 22/74 (29%)
Query: 6 PHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSS 65
P G HG + H HG H+ HG H HG HG
Sbjct: 962 PSGKEPHGDEPQDKEPLDQEMRSEEPHDDKPHGQEPHDDKPHGQEPHDDKPHGQEPHGDE 1021
Query: 66 AHELSAHGLSAHRK 79
H HG H K
Sbjct: 1022 PHGQEPHGDEPHDK 1035
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 20/63 (31%)
Query: 1 AHRLSPHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLS 60
H PH HG H HG HG H H +HG HG
Sbjct: 1002 PHGQEPHDDKPHGQEPHGDEPHGQEPHGDEPHDKEPIDQEMRSEEPHSEESHGDEPHGEE 1061
Query: 61 AHG 63
+HG
Sbjct: 1062 SHG 1064
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 16 AHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAH-GLFSHGLSAHGSSAHELSAHGL 74
E + GSS S + +G+++ F S LFS+ S+ L + +
Sbjct: 305 VQEGTEEGSSPRASVSD----NGNASEAFVDMLRSLLVPLFSNAASSTDDHGITLPQYQV 360
Query: 75 SAH-RKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVM 133
+ R N+ V A+ + + F D+ ELR L + E ++ V
Sbjct: 361 FINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNY--LFRRIEESRVAVAIFS 418
Query: 134 KKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFG--GDAFVEHERWF 191
+++ S CL+ELV++ E + V+PVFY + F G GD E +
Sbjct: 419 ERYTESCWCLDELVKMKEQMEQGKLVVVPVFYR---LNATACKRFMGAFGDNLRNLEWEY 475
Query: 192 KEHPEIVQKWREELT 206
+ PE +QKW+E L+
Sbjct: 476 RSEPERIQKWKEALS 490
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 93 ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVV---KIWVITVMKKHRFSTLCLNELVEI 149
AL ++ + FID++E R L+ F+ + KI ++ + + S C++ELV+I
Sbjct: 44 ALKKEKINVFIDEQEERGKY-----LISLFDTIGESKIALVIFSEGYCESHWCMDELVKI 98
Query: 150 FEYKRKNGQFVIPVFYH---GTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELT 206
EY +N +IP+FY V +L G+ GD F + ++ P+ + KW E L
Sbjct: 99 KEYMDQNRLIIIPIFYRLDLDVVKDLTGK----FGDNFWDLVDKYQPEPKKLHKWTEALF 154
Query: 207 DASRL 211
L
Sbjct: 155 SVCEL 159
>sp|Q54DH8|TAF1_DICDI Transcription initiation factor TFIID subunit 1 OS=Dictyostelium
discoideum GN=taf1 PE=3 SV=1
Length = 2310
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 41/115 (35%), Gaps = 2/115 (1%)
Query: 2 HRLSPHGLSAHGLSAHESSAHGSSAHGSFAHGS-FAHGSSAHEFSTHGSSAHGLFSHGLS 60
HR S H H S H SS H S H S H S G H G
Sbjct: 1737 HRSSEHRSGEHRSSEHRSSEHRGSEHRSSEHRSGEHSSHHRSSEHRSGDREHRSSDRGDR 1796
Query: 61 AHGSSAHELSAHGLSAHRKSAHGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIR 115
H SS H S H S HR S H + D S R S + DRE R E R
Sbjct: 1797 EHRSSEHRSSEHRSSEHRSSEHRSGDKEHRSDREHRSS-EHRSGDREHRSDREHR 1850
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 93 ALCRKSMKTFIDDRELRQVEEIRPDLLKGFE----VVKIWVITVMKKHRFSTLCLNELVE 148
AL ++ FID+ E E +LL E + I+ + + HR CLNEL +
Sbjct: 37 ALREANINVFIDENEFLGSE--MANLLTRIEESELALVIFSVDFTRSHR----CLNELAK 90
Query: 149 IFEYKRKNGQFVIPVFYH---GTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREEL 205
I E K + VIP+FY V L+G+ GD F ER + I QKW+E L
Sbjct: 91 IKERKDQGRLIVIPIFYKVKPSAVKFLEGK----FGDNFRALERNNRHMLPITQKWKEAL 146
>sp|B3A0P1|DGLSP_LOTGI Aspartate, glycine, lysine and serine-rich protein (Fragments)
OS=Lottia gigantea PE=1 SV=1
Length = 977
Score = 37.7 bits (86), Expect = 0.054, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 8 GLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHGSSAH 67
G + G S H S HGS +GS +G+ GSS + FS GS A+ +G ++ +
Sbjct: 290 GDNGRGSSGHRYSDHGSPGNGSPDNGTPGSGSSRYTFSDDGSLAYKSQDNGTPGRKATNY 349
Query: 68 ELSAHGLSAHRKSAHG 83
S G A+ +G
Sbjct: 350 RFSDDGSLAYGAQDNG 365
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 AHRLSPHGLSAHGLSAHESSAHGSSAH-----GSFAHGSFAHGS-----SAHEFSTHGSS 50
HR S HG +G + + GSS + GS A+ S +G+ + + FS GS
Sbjct: 298 GHRYSDHGSPGNGSPDNGTPGSGSSRYTFSDDGSLAYKSQDNGTPGRKATNYRFSDDGSL 357
Query: 51 AHGLFSHGLSAHGSSAHELSAHG 73
A+G +G GS + S G
Sbjct: 358 AYGAQDNGKPGSGSPRYRYSDDG 380
>sp|P48291|RECA1_MYXXA Protein RecA 1 OS=Myxococcus xanthus GN=recA1 PE=3 SV=1
Length = 342
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 167 GTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRL 211
G+ + L+G+R+ G + E W +EHP++++ +E+T S L
Sbjct: 290 GSYFSLRGERIGQGRERAAE---WLREHPDVLEALGKEITGTSAL 331
>sp|Q9R2W4|VIRB4_BARHE Type IV secretion system protein virB4 OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=virB4 PE=1 SV=1
Length = 784
Score = 31.2 bits (69), Expect = 6.5, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 97 KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKN 156
K ++ D +R++EE+ DL++G E +++V + + +E E
Sbjct: 142 KKTQSEPDQEAIRKIEELSQDLIEGLESYGARLLSV---YAHGGILFSEQSEFLHQLVGG 198
Query: 157 GQFVIPVFYHGTVYELQGQRVFFGGDAF-VEHER--------WFKEHPEIVQKWREELTD 207
+ IP+ + + RV FG + + HE +KE+P K R +TD
Sbjct: 199 RRERIPLTFGTIASTIYSDRVIFGKETIEIRHESNERFAGMFGWKEYP---SKTRPGMTD 255
Query: 208 ASRLSGFRFTIT 219
+ F F +T
Sbjct: 256 GLLTAPFEFILT 267
>sp|P04476|HXB7B_XENLA Homeobox protein Hox-B7-B OS=Xenopus laevis GN=hoxb7-b PE=2 SV=1
Length = 220
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 6 PHGLSAHGLSAHESSAHGSSAHGSFAHGSFAHGSSAHEFSTHGSSAHGLFSHGLSAHG-S 64
P G+ + S +S+ S +G+ G+F GS+AHGLFS+G S H S
Sbjct: 22 PSGVFSEQTSCAFASSPQRSGYGNSPGGTFPA----------GSAAHGLFSNGSSLHPQS 71
Query: 65 SAHELSAHGLSA 76
A S++GL A
Sbjct: 72 PAMYPSSYGLDA 83
>sp|Q6FYW7|VIRB4_BARQU Type IV secretion system protein virB4 OS=Bartonella quintana
(strain Toulouse) GN=virB4 PE=3 SV=1
Length = 784
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 97 KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKN 156
K ++ D +R++EE+ DL++G E + +++V + + +E E
Sbjct: 142 KKTQSEPDMEAIRKIEELSQDLIQGLESYEARLLSV---YAHEGILFSEQSEFLHQLVGG 198
Query: 157 GQFVIPVFYHGTVYELQGQRVFFGGDAF-VEHER--------WFKEHPEIVQKWREELTD 207
+ IP+ + + RV FG + + HE +KE+P K R +TD
Sbjct: 199 RRERIPLTFGTIASTIYSDRVIFGKEMIEIRHESNERFVGMFGWKEYP---SKTRPGMTD 255
Query: 208 ASRLSGFRFTIT 219
+ F F +T
Sbjct: 256 GLLTAPFEFILT 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,532,977
Number of Sequences: 539616
Number of extensions: 3395003
Number of successful extensions: 10550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 9567
Number of HSP's gapped (non-prelim): 629
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)