Query 042099
Match_columns 221
No_of_seqs 175 out of 1115
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03194 putative disease resi 100.0 5.1E-44 1.1E-48 302.8 12.8 131 70-218 21-157 (187)
2 PLN03210 Resistant to P. syrin 100.0 3.6E-44 7.8E-49 368.8 14.2 147 70-220 7-158 (1153)
3 PF01582 TIR: TIR domain; Int 99.9 2.3E-26 5E-31 184.3 3.9 128 78-206 1-140 (141)
4 smart00255 TIR Toll - interleu 99.9 2.2E-22 4.7E-27 158.6 11.7 132 75-210 1-139 (140)
5 PF13676 TIR_2: TIR domain; PD 99.6 6.1E-16 1.3E-20 116.7 4.6 84 78-166 1-87 (102)
6 KOG3678 SARM protein (with ste 98.0 9.5E-06 2.1E-10 78.3 6.5 96 73-174 610-727 (832)
7 PF08937 DUF1863: MTH538 TIR-l 98.0 1.4E-05 3E-10 63.5 5.8 86 76-165 1-107 (130)
8 PF08357 SEFIR: SEFIR domain; 96.4 0.016 3.5E-07 46.4 7.3 59 77-135 2-69 (150)
9 PF10137 TIR-like: Predicted n 95.4 0.033 7.2E-07 44.8 5.3 74 77-151 1-90 (125)
10 PF13271 DUF4062: Domain of un 89.1 1 2.2E-05 33.1 5.1 64 77-140 1-68 (83)
11 COG4916 Uncharacterized protei 81.5 1.4 3.1E-05 40.1 3.1 115 71-189 173-301 (329)
12 PF14258 DUF4350: Domain of un 70.1 21 0.00047 24.8 6.1 58 91-161 11-68 (70)
13 COG4271 Predicted nucleotide-b 68.8 11 0.00024 33.2 5.1 75 77-152 84-175 (233)
14 cd00860 ThrRS_anticodon ThrRS 66.3 17 0.00038 25.7 5.1 53 75-131 1-58 (91)
15 PF09441 Abp2: ARS binding pro 63.1 3.2 6.9E-05 35.2 0.7 58 139-206 54-111 (175)
16 PF05014 Nuc_deoxyrib_tr: Nucl 52.9 61 0.0013 24.5 6.3 60 91-151 20-87 (113)
17 KOG2792 Putative cytochrome C 50.2 13 0.00029 33.8 2.5 29 142-170 155-187 (280)
18 PF09419 PGP_phosphatase: Mito 45.2 49 0.0011 27.9 5.1 83 75-166 18-112 (168)
19 cd00738 HGTP_anticodon HGTP an 44.3 64 0.0014 22.7 5.0 40 91-134 24-63 (94)
20 cd00858 GlyRS_anticodon GlyRS 43.7 54 0.0012 25.2 4.8 55 75-135 26-87 (121)
21 PF02310 B12-binding: B12 bind 42.1 98 0.0021 23.1 6.0 57 91-156 21-78 (121)
22 PF03129 HGTP_anticodon: Antic 40.6 39 0.00084 24.4 3.4 37 91-131 22-59 (94)
23 PF01990 ATP-synt_F: ATP synth 40.2 50 0.0011 24.6 4.0 66 91-163 10-75 (95)
24 PF08902 DUF1848: Domain of un 35.7 3.4E+02 0.0074 24.7 9.2 117 91-217 65-199 (266)
25 PF11074 DUF2779: Domain of un 34.3 23 0.00051 28.5 1.4 37 112-150 58-94 (130)
26 PF07429 Glyco_transf_56: 4-al 33.9 38 0.00082 32.1 2.9 47 91-138 301-347 (360)
27 PF03709 OKR_DC_1_N: Orn/Lys/A 31.9 2.4E+02 0.0051 21.7 7.4 66 91-169 10-76 (115)
28 PRK09194 prolyl-tRNA synthetas 29.8 65 0.0014 31.8 3.9 58 74-135 467-531 (565)
29 cd00532 MGS-like MGS-like doma 28.3 1E+02 0.0022 23.5 4.1 20 116-135 57-77 (112)
30 KOG3043 Predicted hydrolase re 28.2 1.1E+02 0.0024 27.5 4.7 77 124-203 37-114 (242)
31 PF11500 Cut12: Spindle pole b 28.1 60 0.0013 27.2 2.9 42 168-209 59-100 (152)
32 cd04185 GT_2_like_b Subfamily 27.7 3.1E+02 0.0068 21.8 7.3 89 76-166 27-118 (202)
33 TIGR01101 V_ATP_synt_F vacuola 27.7 1.1E+02 0.0023 24.3 4.2 27 112-138 46-72 (115)
34 TIGR00418 thrS threonyl-tRNA s 27.5 1E+02 0.0022 30.2 4.8 56 74-134 469-529 (563)
35 cd00861 ProRS_anticodon_short 26.7 1.3E+02 0.0029 21.3 4.3 39 91-134 24-63 (94)
36 COG0289 DapB Dihydrodipicolina 26.4 1.1E+02 0.0024 27.9 4.5 76 70-150 64-140 (266)
37 COG4032 Predicted thiamine-pyr 26.3 46 0.001 28.1 1.9 63 75-137 94-166 (172)
38 PRK09701 D-allose transporter 25.9 91 0.002 27.4 3.9 94 75-173 216-310 (311)
39 PRK01722 formimidoylglutamase; 25.7 3.3E+02 0.0071 24.7 7.5 100 77-177 187-302 (320)
40 cd03028 GRX_PICOT_like Glutare 25.0 41 0.00088 24.6 1.2 29 121-151 4-34 (90)
41 KOG1014 17 beta-hydroxysteroid 24.1 75 0.0016 29.6 3.0 65 65-131 65-131 (312)
42 PRK12325 prolyl-tRNA synthetas 23.7 1.2E+02 0.0025 29.1 4.4 42 91-136 368-409 (439)
43 cd00859 HisRS_anticodon HisRS 23.4 1.9E+02 0.0042 19.6 4.5 30 77-106 3-36 (91)
44 COG4916 Uncharacterized protei 23.4 57 0.0012 30.0 2.1 94 75-169 6-107 (329)
45 cd01423 MGS_CPS_I_III Methylgl 23.3 1.9E+02 0.0041 21.9 4.8 26 78-103 3-31 (116)
46 PRK02228 V-type ATP synthase s 23.2 1.9E+02 0.0041 21.9 4.7 65 91-163 12-77 (100)
47 PF08704 GCD14: tRNA methyltra 22.6 4.1E+02 0.009 23.6 7.4 65 100-174 116-186 (247)
48 TIGR00334 5S_RNA_mat_M5 ribonu 22.3 90 0.0019 26.7 3.0 44 91-138 42-85 (174)
49 COG0710 AroD 3-dehydroquinate 21.9 2.1E+02 0.0045 25.5 5.3 54 100-157 93-146 (231)
50 PF00155 Aminotran_1_2: Aminot 21.8 3.8E+02 0.0082 23.7 7.1 67 91-157 107-181 (363)
51 cd00138 PLDc Phospholipase D. 21.6 1.5E+02 0.0034 23.4 4.2 27 111-137 19-45 (176)
52 cd00154 Rab Rab family. Rab G 21.3 3.1E+02 0.0067 20.2 5.6 35 114-151 62-96 (159)
53 COG0276 HemH Protoheme ferro-l 21.1 3.1E+02 0.0068 25.6 6.5 73 91-166 79-161 (320)
54 PRK01189 V-type ATP synthase s 21.0 1.8E+02 0.004 22.5 4.2 43 91-138 14-57 (104)
55 PF09837 DUF2064: Uncharacteri 20.9 4.1E+02 0.009 20.8 6.8 82 73-162 8-94 (122)
No 1
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=5.1e-44 Score=302.80 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=120.9
Q ss_pred ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN 144 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd 144 (221)
++.+.+|||||||||+|||++ |++|+++||+||+|++++++|+.|.++|.+||++|+++|+|||++|++|+|||+
T Consensus 21 ~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLd 100 (187)
T PLN03194 21 SSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLH 100 (187)
T ss_pred CCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHH
Confidence 455678999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEeEEEeccccccccc-ccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeecC
Q 042099 145 ELVEIFEYKRKNGQFVIPVFYHGTVYELQGQ-RVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTI 218 (221)
Q Consensus 145 EL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q-~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~~ 218 (221)
||++|++++ ++||||||+|+|+|||+| .|.+ +.+++++||+||++|++++||+++.
T Consensus 101 EL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~--------------~~e~v~~Wr~AL~~va~l~G~~~~~ 157 (187)
T PLN03194 101 ELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC--------------PDEEIRRFNWALEEAKYTVGLTFDS 157 (187)
T ss_pred HHHHHHHcC----CEEEEEEecCCHHHhhccccCCC--------------CHHHHHHHHHHHHHHhccccccCCC
Confidence 999999874 489999999999999997 4433 4789999999999999999998864
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.6e-44 Score=368.80 Aligned_cols=147 Identities=29% Similarity=0.421 Sum_probs=139.9
Q ss_pred ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN 144 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd 144 (221)
+.+.|+|||||||||+|||++ |++|.++||++|+|+ ++++|+.|.++|++||++||++|||||++||+|+|||+
T Consensus 7 ~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~ 85 (1153)
T PLN03210 7 SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN 85 (1153)
T ss_pred CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHH
Confidence 557899999999999999998 999999999999987 59999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeecCCC
Q 042099 145 ELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITS 220 (221)
Q Consensus 145 EL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~~~s 220 (221)
||++|++|+++.+++|+||||+|+|+|||+|+|.| |++|.+++++. +.+++++||+||++|++++||++++++
T Consensus 86 el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f-~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDF-GEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred HHHHHHHhhhhcCceEEEEEecccHHHHhhccchH-HHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence 99999999999999999999999999999999999 99999998765 478999999999999999999998754
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.92 E-value=2.3e-26 Score=184.34 Aligned_cols=128 Identities=20% Similarity=0.299 Sum_probs=112.3
Q ss_pred EeccCCc-cchhcc----HHHHhhC--CCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHH
Q 042099 78 RKSAHGN-NDVRLN----SHALCRK--SMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIF 150 (221)
Q Consensus 78 VFIS~rg-~Dtr~~----~~aL~~k--GI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~ 150 (221)
|||||++ +|..+. +.+|+++ |+++|++++++.+|..+.++|.++|++||+.|+|||++|+.|+||++||..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999 555444 8899999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--cEEEeEEEeccccccc-ccccccchhHHHHHHHhhcCC--hHHHHHHHHHHH
Q 042099 151 EYKRKNG--QFVIPVFYHGTVYELQ-GQRVFFGGDAFVEHERWFKEH--PEIVQKWREELT 206 (221)
Q Consensus 151 e~~~~~~--~~VlPIFY~V~PsdVr-~q~g~f~g~aF~~~~~~~~~~--~ekv~~Wr~AL~ 206 (221)
++..+.+ .+||||||+|.|++|+ .|++.| ...|..+.+....+ .++...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRF-LLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHH-HHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHH-HHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9887654 8999999999999999 799999 89988887776543 578999999985
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.88 E-value=2.2e-22 Score=158.59 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=108.6
Q ss_pred ceeEeccCCc-cchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHH
Q 042099 75 SAHRKSAHGN-NDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVE 148 (221)
Q Consensus 75 ~ydVFIS~rg-~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~ 148 (221)
.|||||||++ +|+... ...|...|+.+|.|+..+. +... .+|.++|++|++.|+|+|++|..|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~-~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPG-GGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccc-cchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 4999999999 444443 6677888999999976333 3333 399999999999999999999999999999999
Q ss_pred HHHhhhc-CCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhc
Q 042099 149 IFEYKRK-NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASR 210 (221)
Q Consensus 149 I~e~~~~-~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~ 210 (221)
+++...+ ..+.||||+|+..|+++..+.+.+ ...|.....++.++..+ +.|++++..+.+
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l-~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKF-RKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHH-HHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 9987754 668999999999999999999999 88888776666544444 789999988764
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.60 E-value=6.1e-16 Score=116.69 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=71.1
Q ss_pred EeccCCccchhcc---HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhh
Q 042099 78 RKSAHGNNDVRLN---SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKR 154 (221)
Q Consensus 78 VFIS~rg~Dtr~~---~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~ 154 (221)
|||||+.+|.... ...|++.|+++|+|. ++..|+.+.++|.++|++|+..|+++|++|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--- 76 (102)
T PF13676_consen 1 VFISYSSEDREFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--- 76 (102)
T ss_dssp EEEEEEGGGCCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC---
T ss_pred eEEEecCCcHHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH---
Confidence 8999999997665 889999999999997 899999999999999999999999999999999999999988843
Q ss_pred cCCcEEEeEEEe
Q 042099 155 KNGQFVIPVFYH 166 (221)
Q Consensus 155 ~~~~~VlPIFY~ 166 (221)
.+..|+||..+
T Consensus 77 -~~~~iipv~~~ 87 (102)
T PF13676_consen 77 -RGKPIIPVRLD 87 (102)
T ss_dssp -TSESEEEEECS
T ss_pred -CCCEEEEEEEC
Confidence 45689999843
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.03 E-value=9.5e-06 Score=78.33 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=70.9
Q ss_pred CcceeEeccCCccchhcc----HH-HHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc--------c
Q 042099 73 GLSAHRKSAHGNNDVRLN----SH-ALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF--------S 139 (221)
Q Consensus 73 ~~~ydVFIS~rg~Dtr~~----~~-aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~--------S 139 (221)
+...|||||||.. +.+. .+ .|.-+|+++|+|-+.|..|+- .+.|++.|...+.+|.|++||-.. -
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 3459999999943 3322 22 345589999999888988874 568899999999999999998543 3
Q ss_pred HHhHHHHHHHHHhhhcCCcEEEeEEEe---------cccccccc
Q 042099 140 TLCLNELVEIFEYKRKNGQFVIPVFYH---------GTVYELQG 174 (221)
Q Consensus 140 ~WCLdEL~~I~e~~~~~~~~VlPIFY~---------V~PsdVr~ 174 (221)
.|.-.||.-.+++. .-|||||=. +-|.|+|.
T Consensus 688 DWVHKEl~~Afe~~----KNIiPI~D~aFE~Pt~ed~iPnDirm 727 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQ----KNIIPIFDTAFEFPTKEDQIPNDIRM 727 (832)
T ss_pred HHHHHHHHHHHHhc----CCeeeeecccccCCCchhcCcHHHHH
Confidence 56677777777665 468999843 55666654
No 7
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.98 E-value=1.4e-05 Score=63.55 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=42.6
Q ss_pred eeEeccCCccchhcc----HHHHhh-------CCCe----------EEeeCCcccCcccchHHHHhhhhhceEEEEEEec
Q 042099 76 AHRKSAHGNNDVRLN----SHALCR-------KSMK----------TFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMK 134 (221)
Q Consensus 76 ydVFIS~rg~Dtr~~----~~aL~~-------kGI~----------vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSk 134 (221)
|.|||||...|-... ...|.. ..+. .+.+..+....+.|...|.++|++|.+.||+.++
T Consensus 1 ~~vFIS~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~ 80 (130)
T PF08937_consen 1 YKVFISYSHDDDDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGP 80 (130)
T ss_dssp ----------THH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--T
T ss_pred CCccccccccCcHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 579999999987733 222333 2221 1122223334457889999999999999999999
Q ss_pred CccccHHhHHHHHHHHHhhhcCCcEEEeEEE
Q 042099 135 KHRFSTLCLNELVEIFEYKRKNGQFVIPVFY 165 (221)
Q Consensus 135 nYa~S~WCLdEL~~I~e~~~~~~~~VlPIFY 165 (221)
+-..|+|.-.|+...++ .+..||-|..
T Consensus 81 ~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 81 NTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp T----HHHHHHHHHHTT----T---EEEEET
T ss_pred CcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 99999999999998876 3456666653
No 8
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.36 E-value=0.016 Score=46.39 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=46.0
Q ss_pred eEeccCCccchhcc------HHHHhhC-CCeEEeeCCcccC--cccchHHHHhhhhhceEEEEEEecC
Q 042099 77 HRKSAHGNNDVRLN------SHALCRK-SMKTFIDDRELRQ--VEEIRPDLLKGFEVVKIWVITVMKK 135 (221)
Q Consensus 77 dVFIS~rg~Dtr~~------~~aL~~k-GI~vFiDd~el~~--G~~I~~~I~~aIe~SrisIVVfSkn 135 (221)
.|||+|+....... ...|++. ||.|.+|.-+... +.....=+.+.|+++...|||.|+.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~ 69 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPG 69 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccc
Confidence 59999997554442 6778888 9999999765533 5566667778899999999999943
No 9
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.42 E-value=0.033 Score=44.84 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=55.6
Q ss_pred eEeccCCccch--hcc-HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecC-ccc------------cH
Q 042099 77 HRKSAHGNNDV--RLN-SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKK-HRF------------ST 140 (221)
Q Consensus 77 dVFIS~rg~Dt--r~~-~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSkn-Ya~------------S~ 140 (221)
.|||.|. +|. +.. ...|++.|+.+.+-.+....|..|.+.|.+.++++..+|++++|+ ... -.
T Consensus 1 kVFIvhg-~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR~ 79 (125)
T PF10137_consen 1 KVFIVHG-RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRARQ 79 (125)
T ss_pred CEEEEeC-CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccccc
Confidence 4899888 444 333 556676799888877777899999999999999999999999985 221 12
Q ss_pred HhHHHHHHHHH
Q 042099 141 LCLNELVEIFE 151 (221)
Q Consensus 141 WCLdEL~~I~e 151 (221)
--+.||...+-
T Consensus 80 NVifE~G~f~g 90 (125)
T PF10137_consen 80 NVIFELGLFIG 90 (125)
T ss_pred ceeehhhHHHh
Confidence 35667777664
No 10
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=89.07 E-value=1 Score=33.08 Aligned_cols=64 Identities=9% Similarity=-0.037 Sum_probs=46.0
Q ss_pred eEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccH
Q 042099 77 HRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140 (221)
Q Consensus 77 dVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~ 140 (221)
.||||-.-.|...- .+.|.+.|..+..-+.-...+....+.+++.|++|.+.|.++-.+|-..+
T Consensus 1 rVFiSSt~~Dl~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 1 RVFISSTFRDLKEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred CEEEecChhhHHHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence 48999888886433 67777777754332221223566677889999999999999999997643
No 11
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=81.54 E-value=1.4 Score=40.13 Aligned_cols=115 Identities=11% Similarity=-0.046 Sum_probs=74.4
Q ss_pred cCCcceeEeccCCccchhcc---HHHHh--hCCCeEEeeCCc---ccCcccchHHHHhhh--hhceEEEEEEecCccccH
Q 042099 71 AHGLSAHRKSAHGNNDVRLN---SHALC--RKSMKTFIDDRE---LRQVEEIRPDLLKGF--EVVKIWVITVMKKHRFST 140 (221)
Q Consensus 71 ~~~~~ydVFIS~rg~Dtr~~---~~aL~--~kGI~vFiDd~e---l~~G~~I~~~I~~aI--e~SrisIVVfSknYa~S~ 140 (221)
..+.+||+=+||.|+-.+-. .+.++ ...+..|.|... |-+++ + ..++.-+ +.|+..+|...+||..-.
T Consensus 173 ~~~~~~DiG~SFaGEAR~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L-~~~L~~~Y~~rC~~~~VF~~~~Y~~K~ 250 (329)
T COG4916 173 SSEKPVDSGISFAGEARNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-L-VSTLDPGYDIRCVVTTVFNTGSYICKS 250 (329)
T ss_pred ccccccceeeEeehhhhhHHHHHHHhhhcccCCceeeeechhhccccCcc-H-HHhcccccCceEEEEEEEeCCceEEee
Confidence 55678999999999876555 55555 446788998642 33333 2 2334434 248888999999999999
Q ss_pred HhHHHHHHHHHhhhcCCcEEEeEEE-ecccccc---cccccccchhHHHHHHH
Q 042099 141 LCLNELVEIFEYKRKNGQFVIPVFY-HGTVYEL---QGQRVFFGGDAFVEHER 189 (221)
Q Consensus 141 WCLdEL~~I~e~~~~~~~~VlPIFY-~V~PsdV---r~q~g~f~g~aF~~~~~ 189 (221)
||-.|-..|-+-. .-+...||.| +++.+.+ ..-.|.||.+.|...+.
T Consensus 251 ~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~dG~~~T~G~iD~~~~~~~e~ 301 (329)
T COG4916 251 TCHIEGLEGRLNP--ILDTGFRIKYLYADNIAIDGGKQTPGHFDIDSPIELED 301 (329)
T ss_pred eeccchhhccccc--cccccceEEEEecCCccccccccCCceeecCCcchhhh
Confidence 9999887765422 2245677766 4555544 33456775566654433
No 12
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=70.13 E-value=21 Score=24.77 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEE
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVI 161 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~Vl 161 (221)
++-|++.|+++-..+. . ..+++...-.++|+++.+.-+. -.|+..+.+..+.++..||
T Consensus 11 ~~~L~~~g~~v~~~~~-------~----~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 11 YQLLEEQGVKVERWRK-------P----YEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred HHHHHHCCCeeEEecc-------c----HHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence 6778888998865442 1 2234447778889999965554 4566666666666666554
No 13
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=68.83 E-value=11 Score=33.22 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=54.3
Q ss_pred eEeccCCccchhcc-HHHHh-hCCC-eEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCcc--------ccHH----
Q 042099 77 HRKSAHGNNDVRLN-SHALC-RKSM-KTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHR--------FSTL---- 141 (221)
Q Consensus 77 dVFIS~rg~Dtr~~-~~aL~-~kGI-~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa--------~S~W---- 141 (221)
.||+-+..+-.... .++|. +-.. .++.|. -+..|..|.+.+.+-|++++.+|++..|+=. +-.|
T Consensus 84 kvFvv~ghd~iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~praR 162 (233)
T COG4271 84 KVFVVSGHDAIARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFPRAR 162 (233)
T ss_pred eEEEEeccHHHHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhcccccc
Confidence 89998875544333 66665 3344 455554 4789999999999999999999999999843 2223
Q ss_pred --hHHHHHHHHHh
Q 042099 142 --CLNELVEIFEY 152 (221)
Q Consensus 142 --CLdEL~~I~e~ 152 (221)
.+.||..+|..
T Consensus 163 qNVifELGm~mgr 175 (233)
T COG4271 163 QNVIFELGMFMGR 175 (233)
T ss_pred ccchhhHhhHHhh
Confidence 57788887753
No 14
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=66.30 E-value=17 Score=25.68 Aligned_cols=53 Identities=8% Similarity=0.074 Sum_probs=32.1
Q ss_pred ceeEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhh-hhceEEEEE
Q 042099 75 SAHRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGF-EVVKIWVIT 131 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aI-e~SrisIVV 131 (221)
+++|+|..-+++.... .+.|++.|+++-+|.. +.++...+..|- .+.++.|+|
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~----~~~~~~~~~~a~~~g~~~~iii 58 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR----NEKLGKKIREAQLQKIPYILVV 58 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEE
Confidence 3677665554443322 7899999999999864 235555555543 244455544
No 15
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=63.08 E-value=3.2 Score=35.20 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=38.0
Q ss_pred cHHhHHHHHHHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHH
Q 042099 139 STLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELT 206 (221)
Q Consensus 139 S~WCLdEL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~ 206 (221)
|.|-|.||.+-++.++-+.=.=|-+...|+|-++.+... .+. ..+ + .-++++|+.|+.
T Consensus 54 s~~~Lf~LI~k~~~keikTW~~La~~LGVepp~~ek~qS---tQK---vqQ-Y---aVRLKRWM~aMH 111 (175)
T PF09441_consen 54 STFTLFELIRKLESKEIKTWAQLALELGVEPPDPEKGQS---TQK---VQQ-Y---AVRLKRWMRAMH 111 (175)
T ss_pred hHHHHHHHHHHHhhhhHhHHHHHHHHhCCCCCCcccccc---hHH---HHH-H---HHHHHHHHHHhh
Confidence 689999999988766433333345677899999865221 222 222 2 467889999985
No 16
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=52.86 E-value=61 Score=24.54 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHHhhCCCeEEeeCC-cc-------cCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHH
Q 042099 91 SHALCRKSMKTFIDDR-EL-------RQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFE 151 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~-el-------~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e 151 (221)
.+.|++.|+.+|...+ +. ...+.|...-+++|++|.+.|+++...- .+.=...||..+..
T Consensus 20 ~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~a 87 (113)
T PF05014_consen 20 REALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYA 87 (113)
T ss_dssp HHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHH
Confidence 6788899999887642 11 1224555566689999999999988755 55667888888765
No 17
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=50.23 E-value=13 Score=33.83 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhh----hcCCcEEEeEEEecccc
Q 042099 142 CLNELVEIFEYK----RKNGQFVIPVFYHGTVY 170 (221)
Q Consensus 142 CLdEL~~I~e~~----~~~~~~VlPIFY~V~Ps 170 (221)
|.|||.++.... .+.+..++|||.-|||.
T Consensus 155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 899998876533 34456677999999994
No 18
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=45.23 E-value=49 Score=27.92 Aligned_cols=83 Identities=29% Similarity=0.271 Sum_probs=50.7
Q ss_pred ceeEeccCCccchhcc-HHH--HhhCCCeEEeeCC--cc--cCcccchHHHHhhhhhceE-----EEEEEecCccccHHh
Q 042099 75 SAHRKSAHGNNDVRLN-SHA--LCRKSMKTFIDDR--EL--RQVEEIRPDLLKGFEVVKI-----WVITVMKKHRFSTLC 142 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~-~~a--L~~kGI~vFiDd~--el--~~G~~I~~~I~~aIe~Sri-----sIVVfSknYa~S~WC 142 (221)
.+++++ +|.++- .+. |+++||+..+=|. .| ..-+.+.+++.+.+++.+- .|+|+|-+--++.--
T Consensus 18 ~P~l~V----~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 18 LPHLYV----PSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred CCCEEc----CChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 355554 444444 667 9999999766432 24 2336788999888887662 488999886555422
Q ss_pred HHHHHHHHHhhhcCCcEEEeEEEe
Q 042099 143 LNELVEIFEYKRKNGQFVIPVFYH 166 (221)
Q Consensus 143 LdEL~~I~e~~~~~~~~VlPIFY~ 166 (221)
-.+-++.++.. .+ +|||..
T Consensus 94 ~~~~a~~~~~~--lg---Ipvl~h 112 (168)
T PF09419_consen 94 DGERAEALEKA--LG---IPVLRH 112 (168)
T ss_pred cHHHHHHHHHh--hC---CcEEEe
Confidence 23344444432 22 888754
No 19
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=44.30 E-value=64 Score=22.73 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEec
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMK 134 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSk 134 (221)
...|++.|+.+-+|.. +.++...+..|-+.---.++++.+
T Consensus 24 ~~~Lr~~g~~v~~~~~----~~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 24 LNALLANGIRVLYDDR----ERKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHCCCEEEecCC----CcCHhHHHHHHHhCCCCEEEEECC
Confidence 6789999999999764 345554554443222134555665
No 20
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.66 E-value=54 Score=25.25 Aligned_cols=55 Identities=16% Similarity=-0.013 Sum_probs=33.3
Q ss_pred ceeEeccCCc--cchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhh-hceEEEEEEecC
Q 042099 75 SAHRKSAHGN--NDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFE-VVKIWVITVMKK 135 (221)
Q Consensus 75 ~ydVFIS~rg--~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe-~SrisIVVfSkn 135 (221)
.+||||-.-+ ++.... +..|+++||++-+|.. .++...+..|-+ +.+..| |+.++
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-----~sl~kqlk~A~k~g~~~~i-iiG~~ 87 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-----GSIGRRYARQDEIGTPFCV-TVDFD 87 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-----CCHHHHHHHhHhcCCCEEE-EECcC
Confidence 5788886655 332222 7889999999999863 355555555533 334444 44543
No 21
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.14 E-value=98 Score=23.07 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=37.1
Q ss_pred HHHHhhCCCeE-EeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcC
Q 042099 91 SHALCRKSMKT-FIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKN 156 (221)
Q Consensus 91 ~~aL~~kGI~v-FiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~ 156 (221)
...|++.|+.+ ++|-. .. .+++.+++++.+.-+|.+|=.+. |.+.++.++.+..++.
T Consensus 21 a~~l~~~G~~v~~~d~~-~~-----~~~l~~~~~~~~pd~V~iS~~~~---~~~~~~~~l~~~~k~~ 78 (121)
T PF02310_consen 21 AAYLRKAGHEVDILDAN-VP-----PEELVEALRAERPDVVGISVSMT---PNLPEAKRLARAIKER 78 (121)
T ss_dssp HHHHHHTTBEEEEEESS-B------HHHHHHHHHHTTCSEEEEEESSS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCeEEEECCC-CC-----HHHHHHHHhcCCCcEEEEEccCc---CcHHHHHHHHHHHHhc
Confidence 67889999987 45432 21 16778888888887888876544 4455666666554444
No 22
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=40.58 E-value=39 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhh-hhceEEEEE
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGF-EVVKIWVIT 131 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aI-e~SrisIVV 131 (221)
.+.|++.||++.+|+... .+...+..|. .+.++.|+|
T Consensus 22 ~~~L~~~gi~v~~d~~~~----~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 22 ANKLRKAGIRVELDDSDK----SLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHTTSEEEEESSSS----THHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHCCCEEEEECCCC----chhHHHHHHhhcCCeEEEEE
Confidence 788999999999997544 4444555554 355655544
No 23
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=40.25 E-value=50 Score=24.56 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=42.1
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeE
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPV 163 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPI 163 (221)
..-|+-.|+..+... ..-+++...+.+.++...+.||+++++++.. -.++|.+..+ +...-.|+||
T Consensus 10 v~gFrLaGv~~~~~~---~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~--~~~~l~~~~~--~~~~P~iv~I 75 (95)
T PF01990_consen 10 VLGFRLAGVEGVYVN---TDPEEAEEALKELLKDEDVGIIIITEDLAEK--IRDELDEYRE--ESSLPLIVEI 75 (95)
T ss_dssp HHHHHHTTSEEEEES---HSHHHHHHHHHHHHHHTTEEEEEEEHHHHTT--HHHHHHHHHH--TSSSSEEEEE
T ss_pred HHHHHHcCCCCccCC---CCHHHHHHHHHHHhcCCCccEEEeeHHHHHH--HHHHHHHHHh--ccCCceEEEc
Confidence 345667899988875 1234566666677778999999999998874 2333333332 2233456665
No 24
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=35.71 E-value=3.4e+02 Score=24.68 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHhhCCCeEEee------CCcccCcccchHHHHhhhh-------hceEE----EEEEecCccccHHhHHHHHHHHHhh
Q 042099 91 SHALCRKSMKTFID------DRELRQVEEIRPDLLKGFE-------VVKIW----VITVMKKHRFSTLCLNELVEIFEYK 153 (221)
Q Consensus 91 ~~aL~~kGI~vFiD------d~el~~G~~I~~~I~~aIe-------~Sris----IVVfSknYa~S~WCLdEL~~I~e~~ 153 (221)
...|.++|++.|+. .++|+++-+-..+++++++ .-|+. =|+|++.|.. .|-++....|.+.-
T Consensus 65 L~~l~~~gy~~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~-~~h~~~F~~la~~L 143 (266)
T PF08902_consen 65 LDELDERGYPYYFQFTITGYGKDLEPNVPPKDERIETFRELSERIGPERVIWRYDPIILTDKYTV-DYHLEAFERLAEAL 143 (266)
T ss_pred HHHHHhCCCceEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCH-HHHHHHHHHHHHHH
Confidence 67788899998875 3568887554444444433 33443 2567888655 67788888887766
Q ss_pred hcCCcEEEeEEEecccccccccccccchhHHHHHHHhh-cCChHHHHHHHHHHHHhhcccceeec
Q 042099 154 RKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWF-KEHPEIVQKWREELTDASRLSGFRFT 217 (221)
Q Consensus 154 ~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~-~~~~ekv~~Wr~AL~~va~i~G~~~~ 217 (221)
....+.++-=|.+..+.--++. .+..-.+ .-+.+....--..|.++|.-.|..+.
T Consensus 144 ~g~t~~~viSF~D~Y~k~~~~l---------~~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l~ 199 (266)
T PF08902_consen 144 AGYTDRCVISFLDLYRKVRRNL---------ARLGFRIREPSEEEKRELAKRLAEIAKKYGMTLY 199 (266)
T ss_pred hccCCEEEEEeeeccHHHHHHH---------HhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 6555677666777755432221 1111001 11345566666778888877776654
No 25
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=34.27 E-value=23 Score=28.50 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.4
Q ss_pred ccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHH
Q 042099 112 EEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIF 150 (221)
Q Consensus 112 ~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~ 150 (221)
..+...|.++|..-.-.|||+++.|-.+ ||.||.++.
T Consensus 58 ~~~~~~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~~ 94 (130)
T PF11074_consen 58 RELIEALIKAIGSIYGSIVVYNKSFEKT--RLKELAELF 94 (130)
T ss_pred HHHHHHHHHHhhhhcCeEEEechHHHHH--HHHHHHHHh
Confidence 3456677777777658899999988755 899998874
No 26
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=33.94 E-value=38 Score=32.13 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=27.2
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF 138 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~ 138 (221)
++.|.++||.++.++++|.. ..+.+.=.+-..--+..|..|+|||.+
T Consensus 301 ~~~l~~~~ipVlf~~d~L~~-~~v~ea~rql~~~dk~~iaFf~pny~~ 347 (360)
T PF07429_consen 301 WQDLKEQGIPVLFYGDELDE-ALVREAQRQLANVDKQQIAFFAPNYLQ 347 (360)
T ss_pred HHHHHhCCCeEEeccccCCH-HHHHHHHHHHhhCcccceeeeCCchHH
Confidence 78888889988877655532 222221111111234445589999987
No 27
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=31.93 E-value=2.4e+02 Score=21.67 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhh-hceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeEEEeccc
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFE-VVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTV 169 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe-~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPIFY~V~P 169 (221)
..+|++.|+.+..-.. ++.....|+ ..+++-||+|-+ ....--..+|...+..+ ..=||||.-+++
T Consensus 10 ~~~L~~~~~~vv~~~~--------~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~----~~~iPVFl~~~~ 76 (115)
T PF03709_consen 10 AEALEQRGREVVDADS--------TDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER----NFGIPVFLLAER 76 (115)
T ss_dssp HHHHHHTTTEEEEESS--------HHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH----STT-EEEEEESC
T ss_pred HHHHHHCCCEEEEeCC--------hHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh----CCCCCEEEEecC
Confidence 5678889998776543 345666666 489999999976 11111222333333322 233799987763
No 28
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=29.83 E-value=65 Score=31.81 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=34.8
Q ss_pred cceeEeccCCc---cchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecC
Q 042099 74 LSAHRKSAHGN---NDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKK 135 (221)
Q Consensus 74 ~~ydVFIS~rg---~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSkn 135 (221)
.+|+|+|.--+ ++.... ++.|++.||++.+|+++-..|..+...- ..+..+.| |+.++
T Consensus 467 aP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad---~~GiP~~i-iiG~~ 531 (565)
T PRK09194 467 APFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADAD---LIGIPHRI-VVGDR 531 (565)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHHHHH---hcCCCEEE-EEcCc
Confidence 45889885443 222222 8889999999999987545555544322 23444444 45554
No 29
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=28.32 E-value=1e+02 Score=23.52 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHhhhhh-ceEEEEEEecC
Q 042099 116 PDLLKGFEV-VKIWVITVMKK 135 (221)
Q Consensus 116 ~~I~~aIe~-SrisIVVfSkn 135 (221)
+++.+.|++ -++.+||..++
T Consensus 57 ~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 57 PTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred cHHHHHHhCCCCEEEEEEcCC
Confidence 577888888 88888877664
No 30
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=28.19 E-value=1.1e+02 Score=27.50 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=51.1
Q ss_pred hceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhh-cCChHHHHHHH
Q 042099 124 VVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWF-KEHPEIVQKWR 202 (221)
Q Consensus 124 ~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~-~~~~ekv~~Wr 202 (221)
.++..||+|+.=|--+.--..|+..++.+. +-.+++|=||.-+|.....|+-.+ .+=+..|.-.. ..+-..+.+|.
T Consensus 37 ~~~~~li~i~DvfG~~~~n~r~~Adk~A~~--Gy~v~vPD~~~Gdp~~~~~~~~~~-~~w~~~~~~~~~~~~i~~v~k~l 113 (242)
T KOG3043|consen 37 SSKKVLIVIQDVFGFQFPNTREGADKVALN--GYTVLVPDFFRGDPWSPSLQKSER-PEWMKGHSPPKIWKDITAVVKWL 113 (242)
T ss_pred CCCeEEEEEEeeeccccHHHHHHHHHHhcC--CcEEEcchhhcCCCCCCCCChhhh-HHHHhcCCcccchhHHHHHHHHH
Confidence 455789999999988766667776666432 446899999999999998888766 44444332211 12334566665
Q ss_pred H
Q 042099 203 E 203 (221)
Q Consensus 203 ~ 203 (221)
+
T Consensus 114 k 114 (242)
T KOG3043|consen 114 K 114 (242)
T ss_pred H
Confidence 4
No 31
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=28.13 E-value=60 Score=27.20 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=27.8
Q ss_pred ccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhh
Q 042099 168 TVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDAS 209 (221)
Q Consensus 168 ~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va 209 (221)
+-.+=+.|+|.||-..|......-....+++.+|+...+.-|
T Consensus 59 dL~eP~SqSGkYWK~eFe~Y~~~a~~Em~KLi~yk~~aKsyA 100 (152)
T PF11500_consen 59 DLNEPHSQSGKYWKEEFESYHEKAEKEMEKLIKYKQLAKSYA 100 (152)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457899999999998765544334566777776554443
No 32
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.70 E-value=3.1e+02 Score=21.76 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=48.2
Q ss_pred eeEeccCCcc--chhccHHHHhh-CCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHh
Q 042099 76 AHRKSAHGNN--DVRLNSHALCR-KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEY 152 (221)
Q Consensus 76 ydVFIS~rg~--Dtr~~~~aL~~-kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~ 152 (221)
+.|+|.-.+. +|....+.+.. .+|.+....+....+..+...+..+++..-=.|+++..+..-.+-++++|+..++
T Consensus 27 ~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~- 105 (202)
T cd04185 27 DHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD- 105 (202)
T ss_pred ceEEEEECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-
Confidence 5676643332 23333444432 2344443333333333344344444422233677889998888888999999887
Q ss_pred hhcCCcEEEeEEEe
Q 042099 153 KRKNGQFVIPVFYH 166 (221)
Q Consensus 153 ~~~~~~~VlPIFY~ 166 (221)
+..-..+.|..+.
T Consensus 106 -~~~~~~~~~~~~~ 118 (202)
T cd04185 106 -KDNPQFLAPLVLD 118 (202)
T ss_pred -cCCceEecceeEc
Confidence 3344567775444
No 33
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=27.67 E-value=1.1e+02 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=20.3
Q ss_pred ccchHHHHhhhhhceEEEEEEecCccc
Q 042099 112 EEIRPDLLKGFEVVKIWVITVMKKHRF 138 (221)
Q Consensus 112 ~~I~~~I~~aIe~SrisIVVfSknYa~ 138 (221)
+++...+.+.+....++||++.+++++
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~ 72 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAE 72 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHH
Confidence 345555555577899999999998876
No 34
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=27.50 E-value=1e+02 Score=30.16 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=36.2
Q ss_pred cceeEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhh-hceEEEEEEec
Q 042099 74 LSAHRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFE-VVKIWVITVMK 134 (221)
Q Consensus 74 ~~ydVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe-~SrisIVVfSk 134 (221)
.+.||+|.--+++.... .+.|+++||++.+|.+ ++++...+..|-+ +.+..| |+.+
T Consensus 469 ~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~----~~sl~~q~k~A~~~g~~~~i-iiG~ 529 (563)
T TIGR00418 469 APVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDR----NERLGKKIREAQKQKIPYML-VVGD 529 (563)
T ss_pred CCceEEEEEccchHHHHHHHHHHHHHHcCCEEEEECC----CCCHHHHHHHHHhcCCCEEE-EEch
Confidence 45788776555554332 7889999999999864 4566666666643 344444 4444
No 35
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.69 E-value=1.3e+02 Score=21.26 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhh-hhceEEEEEEec
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGF-EVVKIWVITVMK 134 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aI-e~SrisIVVfSk 134 (221)
...|++.|+++.+|.+. +++...+..|- .+.++.| |+.+
T Consensus 24 a~~Lr~~g~~v~~d~~~----~~l~k~i~~a~~~g~~~~i-iiG~ 63 (94)
T cd00861 24 YAELQAAGVDVLLDDRN----ERPGVKFADADLIGIPYRI-VVGK 63 (94)
T ss_pred HHHHHHCCCEEEEECCC----CCcccchhHHHhcCCCEEE-EECC
Confidence 77899999999998753 24444444442 3444444 4443
No 36
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=26.41 E-value=1.1e+02 Score=27.86 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=49.4
Q ss_pred ccCCcceeEeccCCccchhcc-HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN-SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVE 148 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~-~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~ 148 (221)
..-...+||.|-|...+.-.. .+...+.|++.-+---.+. ++-...|.++.++ .=+|+|+||.-----|..|.+
T Consensus 64 ~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~--~e~~~~l~~~a~~---v~vv~a~NfSiGvnll~~l~~ 138 (266)
T COG0289 64 LLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT--EEQLEKLREAAEK---VPVVIAPNFSLGVNLLFKLAE 138 (266)
T ss_pred hhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCC--HHHHHHHHHHHhh---CCEEEeccchHHHHHHHHHHH
Confidence 344567899999998876554 5566678888777543221 1112344444444 556899999888777777766
Q ss_pred HH
Q 042099 149 IF 150 (221)
Q Consensus 149 I~ 150 (221)
..
T Consensus 139 ~a 140 (266)
T COG0289 139 QA 140 (266)
T ss_pred HH
Confidence 54
No 37
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=26.33 E-value=46 Score=28.06 Aligned_cols=63 Identities=13% Similarity=-0.010 Sum_probs=44.1
Q ss_pred ceeEeccCCccchhcc----------HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCcc
Q 042099 75 SAHRKSAHGNNDVRLN----------SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHR 137 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~----------~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa 137 (221)
.--..+||||.-...- -+-|+-.+|.+|.-...-+.=+.|...+..+.+.|+-..+.||+.|=
T Consensus 94 Pl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~~~W 166 (172)
T COG4032 94 PLLMLASHRGVLKEGIEAQVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSPKYW 166 (172)
T ss_pred chhhhhhccchhhcCCccccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEechHHh
Confidence 3445779998654332 34567789988876543333455666777788899999999999873
No 38
>PRK09701 D-allose transporter subunit; Provisional
Probab=25.90 E-value=91 Score=27.42 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=45.5
Q ss_pred ceeEeccCCccchhccHHHHhhCCCeEEeeCCcc-cCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhh
Q 042099 75 SAHRKSAHGNNDVRLNSHALCRKSMKTFIDDREL-RQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYK 153 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~~~aL~~kGI~vFiDd~el-~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~ 153 (221)
++|++++..+.-.--...+|++.|++ + ++ -.|-.-.+....++..-.+...|--+-+.--..+.+.|...++..
T Consensus 216 ~~~~I~~~~d~~A~g~~~al~~~G~~---~--dv~vvg~d~~~~~~~~~~~~~i~ttv~~~~~~~G~~a~~~l~~~i~~~ 290 (311)
T PRK09701 216 NIKAIYCANDTMAMGVAQAVANAGKT---G--KVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSG 290 (311)
T ss_pred CCCEEEECCcchHHHHHHHHHHcCCC---C--CEEEEEeCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHHHHHhCC
Confidence 46777665543222227788888874 1 12 123222334444554433311122222233344444444444322
Q ss_pred hcCCcEEEeEEEeccccccc
Q 042099 154 RKNGQFVIPVFYHGTVYELQ 173 (221)
Q Consensus 154 ~~~~~~VlPIFY~V~PsdVr 173 (221)
+.-..-+.|-++.++|..|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~ 310 (311)
T PRK09701 291 KVIPLDKAPEFKLVDSILVT 310 (311)
T ss_pred CCCCcccCCceeeeeeeecc
Confidence 22223477888888888875
No 39
>PRK01722 formimidoylglutamase; Provisional
Probab=25.72 E-value=3.3e+02 Score=24.72 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=58.2
Q ss_pred eEeccCCccchhcc-HHHHhhCCCeEEeeCCcc-cCc-ccchHHHHhhhhhce-EE----EEEEecCccc--cH-----H
Q 042099 77 HRKSAHGNNDVRLN-SHALCRKSMKTFIDDREL-RQV-EEIRPDLLKGFEVVK-IW----VITVMKKHRF--ST-----L 141 (221)
Q Consensus 77 dVFIS~rg~Dtr~~-~~aL~~kGI~vFiDd~el-~~G-~~I~~~I~~aIe~Sr-is----IVVfSknYa~--S~-----W 141 (221)
=+.|-.|+.+.... ++.+++.|+++|..+ ++ +.| +.+..++.+.|.+.+ +. |=+|.+.|+. +. .
T Consensus 187 ~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~-~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~aPgtgtp~pgGl 265 (320)
T PRK01722 187 YACIGVSRASNTQALWEEAKELGVTVVTDL-DVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPAAGGV 265 (320)
T ss_pred EEEEEecCCCCCHHHHHHHHHCCCEEEEHH-HhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhhCCCCCCCcCCCC
Confidence 45677787654322 667888999888764 34 334 344445555555333 32 2345666663 22 2
Q ss_pred hHHHHHHHHHhhhcCCcEEEeEEEecccc-ccccccc
Q 042099 142 CLNELVEIFEYKRKNGQFVIPVFYHGTVY-ELQGQRV 177 (221)
Q Consensus 142 CLdEL~~I~e~~~~~~~~VlPIFY~V~Ps-dVr~q~g 177 (221)
-..|+..|++...+..+++-==+..+.|. |...++.
T Consensus 266 s~~e~~~il~~l~~~~~vvg~DivE~~P~~D~~~~Ta 302 (320)
T PRK01722 266 PLETLLRAIEPICRSGKLQAADLVEYNPTFDFDDMTA 302 (320)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEEEEECCCCCCCCcHH
Confidence 37899999976544444443335678886 6655554
No 40
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.98 E-value=41 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=19.5
Q ss_pred hhhhceEEEEEEecCccccHHhHH--HHHHHHH
Q 042099 121 GFEVVKIWVITVMKKHRFSTLCLN--ELVEIFE 151 (221)
Q Consensus 121 aIe~SrisIVVfSknYa~S~WCLd--EL~~I~e 151 (221)
.|++. -|||||+.+.+.+||.. .+.++++
T Consensus 4 ~i~~~--~vvvf~k~~~~~~~Cp~C~~ak~~L~ 34 (90)
T cd03028 4 LIKEN--PVVLFMKGTPEEPRCGFSRKVVQILN 34 (90)
T ss_pred hhccC--CEEEEEcCCCCCCCCcHHHHHHHHHH
Confidence 34444 45678999988888864 5556664
No 41
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.09 E-value=75 Score=29.62 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=48.7
Q ss_pred cccccccCCcceeEeccCCccchhcc-HHHHh-hCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEE
Q 042099 65 SAHELSAHGLSAHRKSAHGNNDVRLN-SHALC-RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVIT 131 (221)
Q Consensus 65 ~~~~~~~~~~~ydVFIS~rg~Dtr~~-~~aL~-~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVV 131 (221)
-++||..++.+ |+|--|.++.-+. .+.+. +.++.|.+-.-|+.+|+.+-+.|.+.+.+-.|.|+|
T Consensus 65 yA~eLAkrG~n--vvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILV 131 (312)
T KOG1014|consen 65 YARELAKRGFN--VVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILV 131 (312)
T ss_pred HHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEE
Confidence 34567888855 9998888887555 55554 457777666556888888888888999998888877
No 42
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=23.74 E-value=1.2e+02 Score=29.07 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=25.9
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCc
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKH 136 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknY 136 (221)
+..|++.||++.+|+++...|..|...- ..+.... ||+.++-
T Consensus 368 ~~~L~~~Gi~v~~D~~~~~lg~ki~~a~---~~giP~~-iiVG~~e 409 (439)
T PRK12325 368 YAALSAAGIDVLYDDTDERPGAKFATMD---LIGLPWQ-IIVGPKG 409 (439)
T ss_pred HHHHHHCCCEEEEECCCCCHhHHHHHHH---HcCCCEE-EEECCcc
Confidence 7889999999999987544555444322 2234444 4555543
No 43
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.39 E-value=1.9e+02 Score=19.60 Aligned_cols=30 Identities=13% Similarity=-0.039 Sum_probs=19.5
Q ss_pred eEeccCCccchh-cc---HHHHhhCCCeEEeeCC
Q 042099 77 HRKSAHGNNDVR-LN---SHALCRKSMKTFIDDR 106 (221)
Q Consensus 77 dVFIS~rg~Dtr-~~---~~aL~~kGI~vFiDd~ 106 (221)
||||-..+++.+ .. ...|++.|+++.++..
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 666654433322 22 7889999999988753
No 44
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=23.38 E-value=57 Score=30.02 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=65.0
Q ss_pred ceeEeccCCccchhcc---HHHHhhCCCeEEeeCCc-c-cCcccchHHHHhhhh--hceEEEEEEecCccccHHhHHHHH
Q 042099 75 SAHRKSAHGNNDVRLN---SHALCRKSMKTFIDDRE-L-RQVEEIRPDLLKGFE--VVKIWVITVMKKHRFSTLCLNELV 147 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~---~~aL~~kGI~vFiDd~e-l-~~G~~I~~~I~~aIe--~SrisIVVfSknYa~S~WCLdEL~ 147 (221)
.+..=++|.++|.... -+-|..+|+.+|.|-.+ - --|..|- .++.-|. ..-+.+...|.+|----|-..|+.
T Consensus 6 ~~~~a~~f~~~d~~~~~~~~n~~~~~~v~~~y~~~~~a~~~~~~~~-~~~~e~~q~~~~~~~~f~~~~~~r~~~~~~~~~ 84 (329)
T COG4916 6 QFEIALSFAGEDREYVDRVANLLREAGVTVFYDIFEEANLWGKNLY-DYLSEIYQDKALFTIMFISEHYSRKMWTNHERQ 84 (329)
T ss_pred heeeeeeecCchHHHHHHHHHHHHhhccEEEEeehhhhhhhhhHHH-HHHHHHHhhhhHHHhhhhhccccCcCCCcHHHH
Confidence 3455679999998776 55678899999998422 1 2344444 2333343 356678888999999999999998
Q ss_pred HHHH-hhhcCCcEEEeEEEeccc
Q 042099 148 EIFE-YKRKNGQFVIPVFYHGTV 169 (221)
Q Consensus 148 ~I~e-~~~~~~~~VlPIFY~V~P 169 (221)
.++- |..+....++|-.++..|
T Consensus 85 ~~~a~~~~~~~~~~~~~~~~~~~ 107 (329)
T COG4916 85 AMQARAFQEHQEYILPARFDETP 107 (329)
T ss_pred HHHHHHhhhccEEehhhhhccCC
Confidence 7774 445555678888777554
No 45
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=23.28 E-value=1.9e+02 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=17.9
Q ss_pred EeccCCccchhcc---HHHHhhCCCeEEe
Q 042099 78 RKSAHGNNDVRLN---SHALCRKSMKTFI 103 (221)
Q Consensus 78 VFIS~rg~Dtr~~---~~aL~~kGI~vFi 103 (221)
||+|....|.... .+.|.+.|+++|-
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred EEEecCcccchhHHHHHHHHHHCCCEEEE
Confidence 6888887776544 5666777777764
No 46
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=23.16 E-value=1.9e+02 Score=21.95 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=37.0
Q ss_pred HHHHhhCCCeEEe-eCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeE
Q 042099 91 SHALCRKSMKTFI-DDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPV 163 (221)
Q Consensus 91 ~~aL~~kGI~vFi-Dd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPI 163 (221)
..-++-.||..+. -++ -+++...+.+.+.+-.+.||+++++++.. .-+++..+++ +.....|+||
T Consensus 12 v~GFrLaGi~~~~~~~~----~ee~~~~l~~l~~~~d~gII~Ite~~~~~--i~e~i~~~~~--~~~~P~ii~I 77 (100)
T PRK02228 12 TTGFRLAGIRKVYEVPD----DEKLDEAVEEVLEDDDVGILVMHDDDLEK--LPRRLRRTLE--ESVEPTVVTL 77 (100)
T ss_pred HHHHHHcCCceEEeeCC----HHHHHHHHHHHhhCCCEEEEEEehhHhHh--hHHHHHHHHh--cCCCCEEEEE
Confidence 4456668997443 221 13455555555677789999999997663 2344444333 1223355555
No 47
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=22.64 E-value=4.1e+02 Score=23.60 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=37.9
Q ss_pred eEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCc------EEEeEEEeccccccc
Q 042099 100 KTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQ------FVIPVFYHGTVYELQ 173 (221)
Q Consensus 100 ~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~------~VlPIFY~V~PsdVr 173 (221)
.+|+|- ..+.+.| +.+.+++++..-.|++||| |++-+.+.++..++.+- -++.--|+|.|..++
T Consensus 116 avfLDl--p~Pw~~i-~~~~~~L~~~gG~i~~fsP-------~ieQv~~~~~~L~~~gf~~i~~~Evl~R~~~v~~~~~~ 185 (247)
T PF08704_consen 116 AVFLDL--PDPWEAI-PHAKRALKKPGGRICCFSP-------CIEQVQKTVEALREHGFTDIETVEVLLREWEVRPRRLR 185 (247)
T ss_dssp EEEEES--SSGGGGH-HHHHHHE-EEEEEEEEEES-------SHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEETCG--
T ss_pred EEEEeC--CCHHHHH-HHHHHHHhcCCceEEEECC-------CHHHHHHHHHHHHHCCCeeeEEEEEEeeEEEEEecccC
Confidence 367763 2344444 4777888667788889999 55656666655444331 234444677777665
Q ss_pred c
Q 042099 174 G 174 (221)
Q Consensus 174 ~ 174 (221)
.
T Consensus 186 ~ 186 (247)
T PF08704_consen 186 P 186 (247)
T ss_dssp B
T ss_pred C
Confidence 4
No 48
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=22.35 E-value=90 Score=26.69 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF 138 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~ 138 (221)
-.+..++||.+|.|.+ .+|+.|...|.+.+-+++.+- +++.++.
T Consensus 42 ~~~~~~rgVIIfTDpD--~~GekIRk~i~~~vp~~khaf--i~~~~a~ 85 (174)
T TIGR00334 42 KKAQKKQGVIILTDPD--FPGEKIRKKIEQHLPGYENCF--IPKHLAK 85 (174)
T ss_pred HHHhhcCCEEEEeCCC--CchHHHHHHHHHHCCCCeEEe--eeHHhcC
Confidence 3455678999999975 489999999988888777553 4666654
No 49
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=21.93 E-value=2.1e+02 Score=25.45 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=33.9
Q ss_pred eEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCC
Q 042099 100 KTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNG 157 (221)
Q Consensus 100 ~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~ 157 (221)
.-|+|-+ +..++..-.++.+.-.+-+ +|+|-+..++++-++|+..++..+...+
T Consensus 93 ~d~iDiE-l~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~ 146 (231)
T COG0710 93 PDYIDIE-LSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLG 146 (231)
T ss_pred CCEEEEE-ccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhC
Confidence 4566642 3333322233333333333 7889999999999999999998776544
No 50
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=21.77 E-value=3.8e+02 Score=23.67 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=37.5
Q ss_pred HHHHhhCCCeEEeeCCcccCcccc-hHHHHhhhhh------ceEEEEEEecCc-cccHHhHHHHHHHHHhhhcCC
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEI-RPDLLKGFEV------VKIWVITVMKKH-RFSTLCLNELVEIFEYKRKNG 157 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I-~~~I~~aIe~------SrisIVVfSknY-a~S~WCLdEL~~I~e~~~~~~ 157 (221)
...++..|+++..-.-....+..+ .+.+.+.+++ ....|++-+++. ....+-.+|+.+|++..++.+
T Consensus 107 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~ 181 (363)
T PF00155_consen 107 IEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYN 181 (363)
T ss_dssp HHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTT
T ss_pred cccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccc
Confidence 445666777643322111122222 3466666776 355677777776 455778899999988665544
No 51
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=21.65 E-value=1.5e+02 Score=23.38 Aligned_cols=27 Identities=11% Similarity=-0.122 Sum_probs=13.3
Q ss_pred cccchHHHHhhhhhceEEEEEEecCcc
Q 042099 111 VEEIRPDLLKGFEVVKIWVITVMKKHR 137 (221)
Q Consensus 111 G~~I~~~I~~aIe~SrisIVVfSknYa 137 (221)
++++.+.+.++|++++-.|.|.+..|.
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~ 45 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLS 45 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEec
Confidence 344444555555555555555555433
No 52
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=21.34 E-value=3.1e+02 Score=20.20 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=22.5
Q ss_pred chHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHH
Q 042099 114 IRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFE 151 (221)
Q Consensus 114 I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e 151 (221)
........++++...|+|++..-..+ +.++...+.
T Consensus 62 ~~~~~~~~~~~~d~ii~v~d~~~~~~---~~~~~~~~~ 96 (159)
T cd00154 62 FRSITPSYYRGAHGAILVYDITNRES---FENLDKWLK 96 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHH---HHHHHHHHH
Confidence 34455667888999999999865443 344444443
No 53
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=21.10 E-value=3.1e+02 Score=25.57 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=50.7
Q ss_pred HHHHhhC----CCeEEeeCCcccCcccchHHHHhhhhh---ceEEEEEEecCccccH--HhHHHHHHHHHhhhc-CCcEE
Q 042099 91 SHALCRK----SMKTFIDDRELRQVEEIRPDLLKGFEV---VKIWVITVMKKHRFST--LCLNELVEIFEYKRK-NGQFV 160 (221)
Q Consensus 91 ~~aL~~k----GI~vFiDd~el~~G~~I~~~I~~aIe~---SrisIVVfSknYa~S~--WCLdEL~~I~e~~~~-~~~~V 160 (221)
.++|.++ .+++|+- ++-|.+..++.++.+++ .++.++.+.|-|..|+ --.+++.++++..+. -....
T Consensus 79 ~~~L~~~L~~~~~~V~~a---mry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~ 155 (320)
T COG0276 79 AAALEERLDLPDFKVYLA---MRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKIST 155 (320)
T ss_pred HHHHHHHhCCCCccEEEe---ecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEE
Confidence 5566654 5777774 66788887787777765 3667888888886655 357888888764442 24568
Q ss_pred EeEEEe
Q 042099 161 IPVFYH 166 (221)
Q Consensus 161 lPIFY~ 166 (221)
||-||+
T Consensus 156 I~~~~~ 161 (320)
T COG0276 156 IPDYYD 161 (320)
T ss_pred ecCccC
Confidence 888876
No 54
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=20.96 E-value=1.8e+02 Score=22.45 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHhhCCCe-EEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc
Q 042099 91 SHALCRKSMK-TFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF 138 (221)
Q Consensus 91 ~~aL~~kGI~-vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~ 138 (221)
.-.|+-.||. +|.-+++ +. ..++.+.+.+..+.||+++++++.
T Consensus 14 ilGFrlaGi~~v~~~~~~----e~-~~~~~~~l~~~~~gII~iTE~~a~ 57 (104)
T PRK01189 14 VLGFRLLGIGDTIEAEGK----DL-VKKFLEIFNNPKCKYIFVSESTKN 57 (104)
T ss_pred HHHHHHcCCceEEEcCCH----HH-HHHHHHHHhcCCeEEEEEEHHHHh
Confidence 3356668996 8874432 22 367888888999999999999876
No 55
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=20.95 E-value=4.1e+02 Score=20.75 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=42.1
Q ss_pred CcceeEeccCCccchhccHHH-HhhCCCeEEeeCCcccCcccchHHHHhhhhhc----eEEEEEEecCccccHHhHHHHH
Q 042099 73 GLSAHRKSAHGNNDVRLNSHA-LCRKSMKTFIDDRELRQVEEIRPDLLKGFEVV----KIWVITVMKKHRFSTLCLNELV 147 (221)
Q Consensus 73 ~~~ydVFIS~rg~Dtr~~~~a-L~~kGI~vFiDd~el~~G~~I~~~I~~aIe~S----risIVVfSknYa~S~WCLdEL~ 147 (221)
...+|++|.+.+.+.+..... ....++.++. +.|..+.+.+.+|++.. . .||++.-+-.. -+.+.|.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----Q~g~dLG~Rm~~a~~~~~~g~~-~vvliGsD~P~--l~~~~l~ 79 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDHAAFRQLWLPSGFSFFP-----QQGGDLGERMANAFQQAARGYE-PVVLIGSDCPD--LTPDDLE 79 (122)
T ss_dssp TSSSEEEEEE----TTHHHHHHHH-TTSEEEE-------SSSHHHHHHHHHHHHHTT-S-EEEEE-SS-TT----HHHHH
T ss_pred CCCcCEEEEEcCCccHHHHhccccCCCCEEee-----cCCCCHHHHHHHHHHHHHcCCC-cEEEEcCCCCC--CCHHHHH
Confidence 456899999998777665555 3345555554 35666777777766654 5 44455544333 2345555
Q ss_pred HHHHhhhcCCcEEEe
Q 042099 148 EIFEYKRKNGQFVIP 162 (221)
Q Consensus 148 ~I~e~~~~~~~~VlP 162 (221)
...+.-+..+.++-|
T Consensus 80 ~A~~~L~~~d~VlgP 94 (122)
T PF09837_consen 80 QAFEALQRHDVVLGP 94 (122)
T ss_dssp HHHHHTTT-SEEEEE
T ss_pred HHHHHhccCCEEEee
Confidence 555554455556666
Done!