Query 042099
Match_columns 221
No_of_seqs 175 out of 1115
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 6.9E-52 2.3E-56 347.8 11.5 145 70-217 3-152 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2.3E-51 7.9E-56 351.6 11.6 148 70-220 30-183 (204)
3 3h16_A TIR protein; bacteria T 100.0 5.1E-33 1.7E-37 225.8 5.1 131 72-208 17-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 1.1E-28 3.6E-33 200.2 2.1 131 71-205 6-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.6E-24 5.4E-29 175.6 2.2 101 72-172 2-110 (149)
6 2j67_A TOLL like receptor 10; 99.9 6E-24 2.1E-28 177.6 3.9 98 70-167 30-134 (178)
7 2js7_A Myeloid differentiation 99.9 1.6E-23 5.4E-28 172.0 4.5 99 71-169 12-117 (160)
8 1t3g_A X-linked interleukin-1 99.9 2.3E-22 7.9E-27 164.9 5.3 96 75-170 2-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 2.6E-17 8.7E-22 161.9 6.5 101 70-170 665-775 (844)
10 1eiw_A Hypothetical protein MT 97.1 0.00038 1.3E-08 53.8 4.3 69 74-163 3-73 (111)
11 3hyn_A Putative signal transdu 95.7 0.043 1.5E-06 46.0 8.5 80 97-179 44-132 (189)
12 2yvq_A Carbamoyl-phosphate syn 59.4 6.9 0.00024 30.4 3.2 59 78-136 27-106 (143)
13 2f62_A Nucleoside 2-deoxyribos 46.0 55 0.0019 25.9 6.7 60 91-151 33-96 (161)
14 4h3d_A 3-dehydroquinate dehydr 42.9 25 0.00084 30.0 4.3 65 91-157 105-169 (258)
15 2d00_A V-type ATP synthase sub 42.7 50 0.0017 24.5 5.6 44 91-138 15-58 (109)
16 3dt5_A Uncharacterized protein 40.1 5.8 0.0002 30.2 -0.1 37 136-172 37-77 (135)
17 2i4r_A V-type ATP synthase sub 40.1 29 0.00099 25.7 3.8 45 91-138 21-65 (102)
18 1g1p_A Conotoxin EVIA; three d 39.4 16 0.00055 21.6 1.8 19 13-31 8-26 (33)
19 2jug_A TUBC protein; docking d 36.6 22 0.00076 24.6 2.6 36 91-126 11-49 (78)
20 3aon_B V-type sodium ATPase su 34.8 33 0.0011 25.9 3.5 62 92-163 15-76 (115)
21 1byr_A Protein (endonuclease); 33.4 75 0.0026 23.5 5.4 17 117-133 18-34 (155)
22 4a6h_A Phosphatidylinositol 4, 25.6 40 0.0014 25.1 2.5 20 193-212 101-120 (120)
23 3hjn_A DTMP kinase, thymidylat 24.0 2.1E+02 0.0073 22.5 6.8 45 130-174 84-137 (197)
24 4fyk_A Deoxyribonucleoside 5'- 23.1 2.7E+02 0.0094 21.8 7.4 72 76-151 3-92 (152)
25 2yry_A Pleckstrin homology dom 23.0 54 0.0018 23.1 2.7 19 193-211 103-121 (122)
26 1wu7_A Histidyl-tRNA synthetas 22.3 52 0.0018 29.5 3.0 55 75-134 332-391 (434)
27 1evl_A Threonyl-tRNA synthetas 21.3 73 0.0025 28.2 3.7 54 74-131 297-355 (401)
28 1v5p_A Pleckstrin homology dom 21.3 58 0.002 24.2 2.6 20 193-212 103-122 (126)
29 3lc0_A Histidyl-tRNA synthetas 20.9 1.3E+02 0.0046 27.4 5.5 55 75-133 361-419 (456)
30 1fob_A Beta-1,4-galactanase; B 20.3 2.1E+02 0.0073 24.7 6.5 74 82-165 4-81 (334)
31 3ftb_A Histidinol-phosphate am 20.3 1.9E+02 0.0064 23.8 6.0 59 91-152 112-172 (361)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6.9e-52 Score=347.83 Aligned_cols=145 Identities=32% Similarity=0.482 Sum_probs=123.0
Q ss_pred ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN 144 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd 144 (221)
++++++|||||||||+|+|++ +++|+++||++|+|++++++|+.|.++|.+||++|+++|||||+||++|+|||+
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 567899999999999999876 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeec
Q 042099 145 ELVEIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFT 217 (221)
Q Consensus 145 EL~~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~ 217 (221)
||++|++|+++.+++||||||+|+|++||+|+|.| |++|.+|+++ .+.+++++||.||++|++++||++.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~f-g~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVL-AEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHH-HHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcH-HHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999999999999999999999999999999999 9999999998 4789999999999999999999985
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.3e-51 Score=351.59 Aligned_cols=148 Identities=26% Similarity=0.424 Sum_probs=138.2
Q ss_pred ccCCcceeEeccCCccchhcc-----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN-----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLN 144 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~-----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLd 144 (221)
+..+++|||||||||+|+|++ +++|+++||++|+|+++|++|+.|.++|++||++||++|||||+||++|+|||+
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 556799999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc-CCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHhhcccceeecCCC
Q 042099 145 ELVEIFEYKRK-NGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDASRLSGFRFTITS 220 (221)
Q Consensus 145 EL~~I~e~~~~-~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~va~i~G~~~~~~s 220 (221)
||++|++|+++ .+++||||||+|+|++||+|+|.| |++|.+|++++ +++++++||.||++||+++||++++++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~f-g~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCY-KKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTH-HHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccH-HHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCCC
Confidence 99999999875 689999999999999999999999 99999999988 478999999999999999999998864
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=5.1e-33 Score=225.84 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=114.1
Q ss_pred CCcceeEeccCCccchhc-c---HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHH
Q 042099 72 HGLSAHRKSAHGNNDVRL-N---SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELV 147 (221)
Q Consensus 72 ~~~~ydVFIS~rg~Dtr~-~---~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~ 147 (221)
.+++|||||||+++|... . +.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|+|++|++|.||++||.
T Consensus 17 ~~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 17 SAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp -CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 468899999999999532 3 899999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEeEEEecccccccccccccchhHHHHHHHhhcCChHHHHHHHHHHHHh
Q 042099 148 EIFEYKRKNGQFVIPVFYHGTVYELQGQRVFFGGDAFVEHERWFKEHPEIVQKWREELTDA 208 (221)
Q Consensus 148 ~I~e~~~~~~~~VlPIFY~V~PsdVr~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL~~v 208 (221)
.|+++.++.+++||||||+|+|++||+|+|.| +++|...... +.+.++-+.|.++
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~-~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTM-ADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCC-CSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccH-HHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 99998877888999999999999999999999 9888654332 3355555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.94 E-value=1.1e-28 Score=200.24 Aligned_cols=131 Identities=12% Similarity=0.098 Sum_probs=91.4
Q ss_pred cCCcceeEeccCCccchhcc---HHHHhh--CCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHH
Q 042099 71 AHGLSAHRKSAHGNNDVRLN---SHALCR--KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNE 145 (221)
Q Consensus 71 ~~~~~ydVFIS~rg~Dtr~~---~~aL~~--kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdE 145 (221)
..+..|||||||+++|+++. +.+|++ .|+++|+|++++.+|+.|.++|.++|++||+.|+|||+||++|.||+.|
T Consensus 6 r~~k~YDvFISy~~~D~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~E 85 (146)
T 3ub2_A 6 RWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQ 85 (146)
T ss_dssp TTSSSEEEEEECCGGGHHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHH
T ss_pred CCCCcceEEEeCChhhHHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHH
Confidence 34578999999999999988 888998 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEeEEEecccccc----cccccccchhHHHHHHHhhcCChHHHHHHHHHH
Q 042099 146 LVEIFEYKRKNGQFVIPVFYHGTVYEL----QGQRVFFGGDAFVEHERWFKEHPEIVQKWREEL 205 (221)
Q Consensus 146 L~~I~e~~~~~~~~VlPIFY~V~PsdV----r~q~g~f~g~aF~~~~~~~~~~~ekv~~Wr~AL 205 (221)
|..++.+.......||||||+|++.++ |.... ..+....+.|....+.|.+|+.||
T Consensus 86 l~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~----id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 86 MLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYY----VDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCC----EETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeee----eeccChHhhHHHHHHHHHHHHHhc
Confidence 999998764334477899999985554 44332 122223333433467899998876
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.89 E-value=1.6e-24 Score=175.61 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=89.2
Q ss_pred CCcceeEeccCCccchhcc----HHHHhhC--CCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHH
Q 042099 72 HGLSAHRKSAHGNNDVRLN----SHALCRK--SMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNE 145 (221)
Q Consensus 72 ~~~~ydVFIS~rg~Dtr~~----~~aL~~k--GI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdE 145 (221)
.++.|||||||+++|+.+. +.+|+++ |+++|+|++++.+|+.|.++|.++|++|++.|+|||++|+.|.||++|
T Consensus 2 ~~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E 81 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE 81 (149)
T ss_dssp CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred CCccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence 4678999999999999776 6789876 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhhcCCcEEEeEEEe-cccccc
Q 042099 146 LVEIFE-YKRKNGQFVIPVFYH-GTVYEL 172 (221)
Q Consensus 146 L~~I~e-~~~~~~~~VlPIFY~-V~PsdV 172 (221)
|..++. +.++.++.||||||+ +++..+
T Consensus 82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 82 LDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp SCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 999985 445567789999995 555444
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.88 E-value=6e-24 Score=177.60 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=84.4
Q ss_pred ccCCcceeEeccCCccchhcc----HHHHhh--CCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN----SHALCR--KSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCL 143 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~----~~aL~~--kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCL 143 (221)
...++.|||||||+++|+.+. +..|++ +|+++|+|++++.+|+.|.++|.++|++|++.|+|||++|++|.||+
T Consensus 30 ~~~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CCCSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred cCCCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 456789999999999999766 788998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEeEEEec
Q 042099 144 NELVEIFEYK-RKNGQFVIPVFYHG 167 (221)
Q Consensus 144 dEL~~I~e~~-~~~~~~VlPIFY~V 167 (221)
+||..++.+. ++.+++||||||+-
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp THHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999999644 55677899999963
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.88 E-value=1.6e-23 Score=171.99 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=88.2
Q ss_pred cCCcceeEeccCCccchhcc---HHHHhhC--CCeEEeeCCcccCcccchHHHHhhhh-hceEEEEEEecCccccHHhHH
Q 042099 71 AHGLSAHRKSAHGNNDVRLN---SHALCRK--SMKTFIDDRELRQVEEIRPDLLKGFE-VVKIWVITVMKKHRFSTLCLN 144 (221)
Q Consensus 71 ~~~~~ydVFIS~rg~Dtr~~---~~aL~~k--GI~vFiDd~el~~G~~I~~~I~~aIe-~SrisIVVfSknYa~S~WCLd 144 (221)
..++.|||||||+++|..+. +.+|+++ |+++|+|++++.+|+.|.++|.++|+ .|++.|+|+|++|++|.||++
T Consensus 12 ~~~~~yDvFISys~~D~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 12 HMPERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp CCTTCEEEEEECCGGGHHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CCCcceEEEEEcccccHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 34678999999999998777 8899884 69999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHhh-hcCCcEEEeEEEeccc
Q 042099 145 ELVEIFEYK-RKNGQFVIPVFYHGTV 169 (221)
Q Consensus 145 EL~~I~e~~-~~~~~~VlPIFY~V~P 169 (221)
||..++++. ++.+++||||||+.-+
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999865 3445789999998653
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.3e-22 Score=164.88 Aligned_cols=96 Identities=16% Similarity=0.005 Sum_probs=83.5
Q ss_pred ceeEeccCCccchhcc--------------HH-HHh-hCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCcc-
Q 042099 75 SAHRKSAHGNNDVRLN--------------SH-ALC-RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHR- 137 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~--------------~~-aL~-~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa- 137 (221)
.|||||||+++|+.+. +. .|+ +.|+++|+|++++.+|+.|.++|.++|++||..|+|||++|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 6999999999997432 33 698 799999999999999999999999999999999999999997
Q ss_pred ccHHhHHHHHHHHHhh-hcCCcEEEeEEEecccc
Q 042099 138 FSTLCLNELVEIFEYK-RKNGQFVIPVFYHGTVY 170 (221)
Q Consensus 138 ~S~WCLdEL~~I~e~~-~~~~~~VlPIFY~V~Ps 170 (221)
.|.||++||..++.+. ++.++.||||||.-.|.
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999876 55678999999975543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=161.85 Aligned_cols=101 Identities=10% Similarity=0.018 Sum_probs=89.0
Q ss_pred ccCCcceeEeccCCccchhcc----HHHHh-----hCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccH
Q 042099 70 SAHGLSAHRKSAHGNNDVRLN----SHALC-----RKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFST 140 (221)
Q Consensus 70 ~~~~~~ydVFIS~rg~Dtr~~----~~aL~-----~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~ 140 (221)
....++|||||||+++|..+. ...|+ +.|+++|++++++.+|+.|.++|.++|++||..|+|+|++|+.|.
T Consensus 665 ~~~~~~yd~fisy~~~d~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 665 EPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SSSCCCCSEEEECCSTTHHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cccceeccEEEEeeCCcHHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 345689999999999998777 56676 468999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhh-hcCCcEEEeEEEecccc
Q 042099 141 LCLNELVEIFEYK-RKNGQFVIPVFYHGTVY 170 (221)
Q Consensus 141 WCLdEL~~I~e~~-~~~~~~VlPIFY~V~Ps 170 (221)
||.+|+..++.+. ++..++||||||+..|.
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999999988654 56678999999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.13 E-value=0.00038 Score=53.77 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=49.5
Q ss_pred cceeEeccCCccchhcc--HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHH
Q 042099 74 LSAHRKSAHGNNDVRLN--SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFE 151 (221)
Q Consensus 74 ~~ydVFIS~rg~Dtr~~--~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e 151 (221)
.+|.+||||..+| .+. ...|.+.|+. |.| +.|+.+.+.||+.+++-..|+||..|+....+
T Consensus 3 ~~~~lFISh~~~d-~~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~ 65 (111)
T 1eiw_A 3 AEIRLYITEGEVE-DYRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDLARK 65 (111)
T ss_dssp CCEEEEECCCCSH-HHHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred ceEEEEEecccHh-HHHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence 3699999999999 433 3333333442 223 67999999999999999999999999976654
Q ss_pred hhhcCCcEEEeE
Q 042099 152 YKRKNGQFVIPV 163 (221)
Q Consensus 152 ~~~~~~~~VlPI 163 (221)
.+..|+-|
T Consensus 66 ----~gkpIigV 73 (111)
T 1eiw_A 66 ----SSKPIITV 73 (111)
T ss_dssp ----TTCCEEEE
T ss_pred ----cCCCEEEE
Confidence 34445544
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.72 E-value=0.043 Score=46.04 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCCeEEeeCCcc----cC----cccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeEEEecc
Q 042099 97 KSMKTFIDDREL----RQ----VEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPVFYHGT 168 (221)
Q Consensus 97 kGI~vFiDd~el----~~----G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPIFY~V~ 168 (221)
..+-.|.|--++ .. -..|.+.|.+.|..|+..|+++|++...|.|-..|+...++ +.+..||-|+-+-+
T Consensus 44 ~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 44 DNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYD 120 (189)
T ss_dssp CTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCC
T ss_pred CCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCcc
Confidence 356778884322 22 24588899999999999999999999999999999988872 23456666654422
Q ss_pred -ccccccccccc
Q 042099 169 -VYELQGQRVFF 179 (221)
Q Consensus 169 -PsdVr~q~g~f 179 (221)
.+++..-.|.|
T Consensus 121 ~~~~i~~~~g~~ 132 (189)
T 3hyn_A 121 KKSDIVDSNGNF 132 (189)
T ss_dssp SGGGTBCTTSCB
T ss_pred ccchhhhccccc
Confidence 33454444544
No 12
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=59.44 E-value=6.9 Score=30.41 Aligned_cols=59 Identities=10% Similarity=-0.033 Sum_probs=36.9
Q ss_pred EeccCCccchhcc---HHHHhhCCCeEEeeC-------------Cc---ccCc-c-cchHHHHhhhhhceEEEEEEecCc
Q 042099 78 RKSAHGNNDVRLN---SHALCRKSMKTFIDD-------------RE---LRQV-E-EIRPDLLKGFEVVKIWVITVMKKH 136 (221)
Q Consensus 78 VFIS~rg~Dtr~~---~~aL~~kGI~vFiDd-------------~e---l~~G-~-~I~~~I~~aIe~SrisIVVfSknY 136 (221)
||||-.+.|.... .+.|.+.|++++--. +. +..| + +..++|...|++-++.+||..++-
T Consensus 27 vliSv~d~dK~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 27 ILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred EEEEecccchHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC
Confidence 9999998887655 556666677665210 01 1112 1 011578888888888888887765
No 13
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=45.96 E-value=55 Score=25.93 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=42.1
Q ss_pred HHHHhhCCCeEEeeCCc-ccCcccchHHHHhhhhhceEEEEEEec---CccccHHhHHHHHHHHH
Q 042099 91 SHALCRKSMKTFIDDRE-LRQVEEIRPDLLKGFEVVKIWVITVMK---KHRFSTLCLNELVEIFE 151 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~e-l~~G~~I~~~I~~aIe~SrisIVVfSk---nYa~S~WCLdEL~~I~e 151 (221)
.+.|++.|+.+|.-.+. ....+.|...-.++|++|.+.|++++| .+..+ =...|+.....
T Consensus 33 ~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~-GTafEiGyA~A 96 (161)
T 2f62_A 33 RELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDC-GTAFEVGCAAA 96 (161)
T ss_dssp HHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCH-HHHHHHHHHHH
T ss_pred HHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCC-cHHHHHHHHHH
Confidence 67788889988874321 123345555557899999999999985 45544 47788877664
No 14
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=42.87 E-value=25 Score=29.99 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCC
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNG 157 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~ 157 (221)
+..+.+.|.--|+|- |+...+.+..++.+..++..+-|| .|-...+.+|-.+||..++..+...+
T Consensus 105 l~~~~~~~~~d~iDv-El~~~~~~~~~l~~~a~~~~~kiI-~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 105 NKEISNTGLVDLIDV-ELFMGDEVIDEVVNFAHKKEVKVI-ISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHTTCCSEEEE-EGGGCHHHHHHHHHHHHHTTCEEE-EEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCchhhHH-hhhccHHHHHHHHHHHHhCCCEEE-EEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 444445565557775 366666666677666666665554 45444455667789999887776655
No 15
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=42.66 E-value=50 Score=24.51 Aligned_cols=44 Identities=11% Similarity=-0.017 Sum_probs=33.1
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF 138 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~ 138 (221)
..-++-.||.+|... ..+++...+.+.+++..+.||+++++.+.
T Consensus 15 v~GFrLaGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 456677899998643 23556666666677779999999999988
No 16
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=40.13 E-value=5.8 Score=30.16 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=25.0
Q ss_pred ccccHHhHHHHHHHHHhhhc--C--CcEEEeEEEecccccc
Q 042099 136 HRFSTLCLNELVEIFEYKRK--N--GQFVIPVFYHGTVYEL 172 (221)
Q Consensus 136 Ya~S~WCLdEL~~I~e~~~~--~--~~~VlPIFY~V~PsdV 172 (221)
|+--.---||+..|+.|++- + -.+|+|.-++.....+
T Consensus 37 yvytaqtedeietiitcrrylagnnllrvlpmhfkfkadki 77 (135)
T 3dt5_A 37 YVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKI 77 (135)
T ss_dssp SCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECC
T ss_pred HheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchh
Confidence 44444567999999999863 1 2478998776555444
No 17
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=40.08 E-value=29 Score=25.69 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=32.6
Q ss_pred HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccc
Q 042099 91 SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRF 138 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~ 138 (221)
..-|+-.||..+.+.. .-+++.+.+.+.+++..+.||+++++.+.
T Consensus 21 v~GFrLaGi~~~~~~~---~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 21 TIGFMLAGISDIYEVT---SDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHTTCCCEEECC---SHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHcCCCcccCCC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 4566778998877221 22456666777777789999999999887
No 18
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=39.38 E-value=16 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=10.2
Q ss_pred cccccccccccCccccccc
Q 042099 13 GLSAHESSAHGSSAHGSFA 31 (221)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (221)
|.|.--.--.|.|-+|+|.
T Consensus 8 gfcslpilknglccsgacv 26 (33)
T 1g1p_A 8 GFCSLPILKNGLCCSGACV 26 (33)
T ss_dssp SBCCCSSSSCCCBTTBCBS
T ss_pred cceechhhcCCcccCCcee
Confidence 3444444455666666664
No 19
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=36.65 E-value=22 Score=24.60 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHhhCCCeEEeeCCccc---CcccchHHHHhhhhhce
Q 042099 91 SHALCRKSMKTFIDDRELR---QVEEIRPDLLKGFEVVK 126 (221)
Q Consensus 91 ~~aL~~kGI~vFiDd~el~---~G~~I~~~I~~aIe~Sr 126 (221)
...|.++||+.|.|++.|+ +-..+++++...+.+.+
T Consensus 11 l~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 11 LAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 5678899999999988764 22457778887776644
No 20
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=34.77 E-value=33 Score=25.87 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=39.0
Q ss_pred HHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEecCccccHHhHHHHHHHHHhhhcCCcEEEeE
Q 042099 92 HALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKHRFSTLCLNELVEIFEYKRKNGQFVIPV 163 (221)
Q Consensus 92 ~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknYa~S~WCLdEL~~I~e~~~~~~~~VlPI 163 (221)
.-++-.||.+|... .-+++...+.+.+++ .+.||+++++.+.. ..+++.+ ++ +...-.|+||
T Consensus 15 ~GFrLaGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~~~P~IveI 76 (115)
T 3aon_B 15 SPFRLFGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQLTPAIILI 76 (115)
T ss_dssp GGGGGGTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TSSSCEEEEE
T ss_pred HHHHHcCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CCCCCEEEEE
Confidence 34556799888643 234566666666777 99999999998773 3344443 22 2223466666
No 21
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=33.43 E-value=75 Score=23.45 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=6.5
Q ss_pred HHHhhhhhceEEEEEEe
Q 042099 117 DLLKGFEVVKIWVITVM 133 (221)
Q Consensus 117 ~I~~aIe~SrisIVVfS 133 (221)
.+.+.|++++-.|.|.+
T Consensus 18 ~~~~~i~~A~~~I~i~~ 34 (155)
T 1byr_A 18 LVLSAIDSAKTSIRMMA 34 (155)
T ss_dssp HHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHhhEEEEEE
Confidence 33333333333333333
No 22
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=25.63 E-value=40 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 042099 193 EHPEIVQKWREELTDASRLS 212 (221)
Q Consensus 193 ~~~ekv~~Wr~AL~~va~i~ 212 (221)
++.+..++|.+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 56889999999999998764
No 23
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.00 E-value=2.1e+02 Score=22.51 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=23.9
Q ss_pred EEEecCccccHHhHH--------HHHHHHHhhhcCC-cEEEeEEEecccccccc
Q 042099 130 ITVMKKHRFSTLCLN--------ELVEIFEYKRKNG-QFVIPVFYHGTVYELQG 174 (221)
Q Consensus 130 VVfSknYa~S~WCLd--------EL~~I~e~~~~~~-~~VlPIFY~V~PsdVr~ 174 (221)
+|++..|..|..-.. |+..-++.....+ ..=+-||++++|..-.+
T Consensus 84 ~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~ 137 (197)
T 3hjn_A 84 AVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALK 137 (197)
T ss_dssp EEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHH
T ss_pred eEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHH
Confidence 578899988876532 2222222222111 22233677998876543
No 24
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=23.11 E-value=2.7e+02 Score=21.80 Aligned_cols=72 Identities=18% Similarity=0.001 Sum_probs=44.0
Q ss_pred eeEec--cCCccchh-cc----HHHHhhCCCeEEeeC---Ccc-cCcc-------cchHHHHhhhhhceEEEEEEecCcc
Q 042099 76 AHRKS--AHGNNDVR-LN----SHALCRKSMKTFIDD---REL-RQVE-------EIRPDLLKGFEVVKIWVITVMKKHR 137 (221)
Q Consensus 76 ydVFI--S~rg~Dtr-~~----~~aL~~kGI~vFiDd---~el-~~G~-------~I~~~I~~aIe~SrisIVVfSknYa 137 (221)
+.||+ ++++.+.+ .. .+.|++.| .|+... .++ ..|+ .|...-++.|++|.+.|.+++ .
T Consensus 3 mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~ 78 (152)
T 4fyk_A 3 RSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---Q 78 (152)
T ss_dssp CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---S
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---C
Confidence 46776 56663222 22 67888899 775421 112 1222 255556678999999999988 4
Q ss_pred ccHHhHHHHHHHHH
Q 042099 138 FSTLCLNELVEIFE 151 (221)
Q Consensus 138 ~S~WCLdEL~~I~e 151 (221)
.|.=-..|+.....
T Consensus 79 ~d~Gt~~EiG~A~a 92 (152)
T 4fyk_A 79 PSLGVGYELGRAVA 92 (152)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56667788887764
No 25
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.95 E-value=54 Score=23.15 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 042099 193 EHPEIVQKWREELTDASRL 211 (221)
Q Consensus 193 ~~~ekv~~Wr~AL~~va~i 211 (221)
++++..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4678899999999998875
No 26
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=22.27 E-value=52 Score=29.47 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=32.7
Q ss_pred ceeEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhh-hhceEEEEEEec
Q 042099 75 SAHRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGF-EVVKIWVITVMK 134 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aI-e~SrisIVVfSk 134 (221)
++||+|..-+++.... ++.|+++||++-+|+++ +.+...+..|- .+.+..| |+.+
T Consensus 332 p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~~i-iiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADFAV-IFGE 391 (434)
T ss_dssp SCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSEEE-EEEH
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCEEE-EECc
Confidence 5788864444443222 88999999999998753 34444444432 3455554 4443
No 27
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=21.31 E-value=73 Score=28.20 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=33.9
Q ss_pred cceeEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhh-hhceEEEEE
Q 042099 74 LSAHRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGF-EVVKIWVIT 131 (221)
Q Consensus 74 ~~ydVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aI-e~SrisIVV 131 (221)
..+||+|---+++.... ++.|++.||++-+|++ +.++...+..|- .+.+..|+|
T Consensus 297 ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLR----NEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECC----SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHhcCCCEEEEE
Confidence 34788875444443322 8889999999999975 345555555553 345555544
No 28
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=21.31 E-value=58 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.4
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 042099 193 EHPEIVQKWREELTDASRLS 212 (221)
Q Consensus 193 ~~~ekv~~Wr~AL~~va~i~ 212 (221)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 56889999999999998874
No 29
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=20.88 E-value=1.3e+02 Score=27.41 Aligned_cols=55 Identities=9% Similarity=-0.067 Sum_probs=34.8
Q ss_pred ceeEeccCCccchhcc----HHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEe
Q 042099 75 SAHRKSAHGNNDVRLN----SHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVM 133 (221)
Q Consensus 75 ~ydVFIS~rg~Dtr~~----~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfS 133 (221)
..|||+..-+++.+.. ...|+++||++-+|.. +.++...+..|-+.---.+||+.
T Consensus 361 ~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 361 VVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 5788887666665433 7889999999988753 23466565555543222344444
No 30
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=20.30 E-value=2.1e+02 Score=24.67 Aligned_cols=74 Identities=11% Similarity=-0.073 Sum_probs=41.5
Q ss_pred CCccchhccHHHHhhCCCeEEeeCCcccCcccchHHHHhhhhhceEEEEEEe----cCccccHHhHHHHHHHHHhhhcCC
Q 042099 82 HGNNDVRLNSHALCRKSMKTFIDDRELRQVEEIRPDLLKGFEVVKIWVITVM----KKHRFSTLCLNELVEIFEYKRKNG 157 (221)
Q Consensus 82 ~rg~Dtr~~~~aL~~kGI~vFiDd~el~~G~~I~~~I~~aIe~SrisIVVfS----knYa~S~WCLdEL~~I~e~~~~~~ 157 (221)
++|.|... +..+++.|.+. .|++ |..- +.++.+++..+--|-+. |. .-.+-++++..+++..++.+
T Consensus 4 ~~g~d~s~-~~~~e~~g~~~-~~~~----G~~~--~~~~ilk~~G~n~vRlri~v~P~--~g~~d~~~~~~~~~~ak~~G 73 (334)
T 1fob_A 4 YRGADISS-LLLLEDEGYSY-KNLN----GQTQ--ALETILADAGINSIRQRVWVNPS--DGSYDLDYNLELAKRVKAAG 73 (334)
T ss_dssp EEEEECTT-HHHHHHTTCCC-BCTT----SCBC--CHHHHHHHHTCCEEEEEECSCCT--TCTTCHHHHHHHHHHHHHTT
T ss_pred eeeeeHHH-HHHHHHcCCEE-ECCC----CCCc--hHHHHHHHcCCCEEEEEEEECCC--CCccCHHHHHHHHHHHHHCC
Confidence 46777665 66788899984 5543 2211 22333333333222221 11 22345889999998777788
Q ss_pred cEEEeEEE
Q 042099 158 QFVIPVFY 165 (221)
Q Consensus 158 ~~VlPIFY 165 (221)
..|+.-|+
T Consensus 74 l~v~ld~h 81 (334)
T 1fob_A 74 MSLYLDLH 81 (334)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEec
Confidence 77666664
No 31
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=20.29 E-value=1.9e+02 Score=23.79 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=33.9
Q ss_pred HHHHhhCCCeE-EeeCCcccCcccchHHHHhhhhhceEEEEEEecCc-cccHHhHHHHHHHHHh
Q 042099 91 SHALCRKSMKT-FIDDRELRQVEEIRPDLLKGFEVVKIWVITVMKKH-RFSTLCLNELVEIFEY 152 (221)
Q Consensus 91 ~~aL~~kGI~v-FiDd~el~~G~~I~~~I~~aIe~SrisIVVfSknY-a~S~WCLdEL~~I~e~ 152 (221)
...+...|+++ +++-+ ...+-.+ +.+.++|++ ...|++-+++. ....+-++||.+|.+.
T Consensus 112 ~~~~~~~g~~~~~~~~~-~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~ 172 (361)
T 3ftb_A 112 EINAKKHGVSVVFSYLD-ENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKL 172 (361)
T ss_dssp HHHHHHTTCEEEEEECC-TTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeecC-cccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 44566678864 44322 1112223 577788877 55566667754 3345566777777763
Done!