BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042101
(380 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255564297|ref|XP_002523145.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223537552|gb|EEF39176.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 306
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/307 (68%), Positives = 242/307 (78%), Gaps = 9/307 (2%)
Query: 78 LKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAG 137
++ +GINCD S IPG+++HLLCPKCKGG +S+ERSLS+HIIQD DFAMWRC+R CGWAG
Sbjct: 1 MEFLGINCDRSSIPGKFSHLLCPKCKGG-KSVERSLSLHIIQDADFAMWRCYRTCCGWAG 59
Query: 138 RAFA-------GSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQ 190
+AFA G N + KV +SRQ + + LEPLGEKLIAY +R IS+ TL+RNSVMQ
Sbjct: 60 QAFADDRATNEGMNIMLKVNTSRQTTSEGIALEPLGEKLIAYFSDRGISKETLRRNSVMQ 119
Query: 191 RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEID 249
DQ IAF Y N VLVGCKYR+ E+KF Q+KGTEKWLYGLDDINET E+IIVEGEID
Sbjct: 120 MAADQDVIAFTYRQNRVLVGCKYRTTEKKFWQDKGTEKWLYGLDDINETTEIIIVEGEID 179
Query: 250 KLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDAD 309
KLSVEEAGF+NCVSVP GAP VS +++PP E D YQYLWNC+++LDKVSRIIL TD D
Sbjct: 180 KLSVEEAGFRNCVSVPGGAPQVVSTKDVPPLENDKAYQYLWNCRDYLDKVSRIILATDGD 239
Query: 310 TPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
G ALAEELARRLGK+RC VRWPKKD FKDANEVLKCLGP AL+EVIE AELY
Sbjct: 240 VAGQALAEELARRLGKERCCIVRWPKKDHSRCFKDANEVLKCLGPIALKEVIETAELYHS 299
Query: 370 HVSEEAL 376
H +A+
Sbjct: 300 HAISQAI 306
>gi|359483975|ref|XP_002270298.2| PREDICTED: uncharacterized protein LOC100263216 [Vitis vinifera]
Length = 380
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/312 (66%), Positives = 246/312 (78%), Gaps = 2/312 (0%)
Query: 62 KDDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDG 121
+D + D+ KL ++QK+++ GI DDSC+PGRY HL+CPKC GG+ +ERSLS+HI QD
Sbjct: 66 EDGSSDLDKLRVLRQKIEVSGITLDDSCVPGRYHHLICPKC-NGGQLMERSLSLHITQDR 124
Query: 122 DFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEG 181
+FAMWRCFR CGWAGR F S+ +++ + SLGLEPLG+KLIAY GERMISE
Sbjct: 125 NFAMWRCFRSTCGWAGRVFPESSAAYSEVTNNWMTVDSLGLEPLGDKLIAYFGERMISEK 184
Query: 182 TLQRNSVMQRLHDQA-IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAE 240
TL RN+VMQ +Q+ IA Y NG LVGCKYRSM ++F QEKGTEK LYGLDDI E E
Sbjct: 185 TLWRNAVMQLSGNQSVIALTYRQNGRLVGCKYRSMGKRFWQEKGTEKILYGLDDIQEANE 244
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVS 300
+IIVEGE+DKLSVEEAGF NCVSVP GAP KVS +ELP +KDT Y YLWNCKE+LDK S
Sbjct: 245 IIIVEGEVDKLSVEEAGFCNCVSVPGGAPQKVSAKELPSLDKDTAYHYLWNCKEYLDKAS 304
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREV 360
RIIL TD D+PG ALAEELARRLGK+RCWRV WPKK++ S FKDANEVLK LG ALREV
Sbjct: 305 RIILATDGDSPGQALAEELARRLGKERCWRVSWPKKEDSSCFKDANEVLKNLGADALREV 364
Query: 361 IENAELYQLHVS 372
IENAELY+++ S
Sbjct: 365 IENAELYEVNSS 376
>gi|388507530|gb|AFK41831.1| unknown [Lotus japonicus]
Length = 384
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 264/372 (70%), Gaps = 22/372 (5%)
Query: 8 PGHLSLTNGLATTSSVTV-PRRLGRVWSRLLSYPTHVTGNPSLQCNSDAESFGEH--KDD 64
P L T A T++V+V PRR+ V +++ T +P GE DD
Sbjct: 19 PKLLPRTRTYAATTAVSVSPRRICTVSCHSVAHATTTVPSPP--------DGGEQIVDDD 70
Query: 65 TIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFA 124
D ++ +KQK+ L+GI D++C+P Y +L CPKCKGG RS ERSLS HII D +FA
Sbjct: 71 IFDAPRMKMLKQKMDLLGIKLDNTCVPALYHNLRCPKCKGG-RSKERSLSFHIISDCEFA 129
Query: 125 MWRCFRVDCGWAGRAFAGSNKIRKVMSSR-----QVAEKSLGLEPLGEKLIAYLGERMIS 179
MWRCFR +CGWAGR FA ++ +S+ Q EKSLGLEPLG +L+AY ER+IS
Sbjct: 130 MWRCFRPECGWAGRVFADDMELDGKVSANAKPYGQTTEKSLGLEPLGPQLLAYFKERLIS 189
Query: 180 EGTLQRNSVMQRLHD----QAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI 235
E TL RN+V Q L D + IAF Y NG+LVGCKYR++E++F Q KGT+K LYG+DDI
Sbjct: 190 EKTLSRNAVRQ-LSDSDDKKVIAFTYKQNGLLVGCKYRTVEKRFWQGKGTDKVLYGIDDI 248
Query: 236 NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEH 295
+ +E+IIVEGEIDKLS+EEAGFQNCVSVP GAP KVS ++LPPREKDT YQYLWNCKE+
Sbjct: 249 SHASEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPGKVSFKDLPPREKDTAYQYLWNCKEY 308
Query: 296 LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPG 355
LDKV RIIL TD D PG ALAEELARRLG +RCWRV WPKKDE S FKDANEVLK +G
Sbjct: 309 LDKVVRIILATDNDQPGQALAEELARRLGHERCWRVHWPKKDESSCFKDANEVLKYMGAD 368
Query: 356 ALREVIENAELY 367
AL+ ++ENAE Y
Sbjct: 369 ALKRMVENAEPY 380
>gi|356533161|ref|XP_003535136.1| PREDICTED: uncharacterized protein LOC100814805 [Glycine max]
Length = 375
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/353 (57%), Positives = 261/353 (73%), Gaps = 15/353 (4%)
Query: 21 SSVTVPRRLGRVWSRLLSYPTHVTGNPSLQCNSDAESFGEHKDDTIDISKLTEVKQKLKL 80
++ + RL VW ++ T + +P AE + D + D K+ +KQK++L
Sbjct: 28 AATVLSPRLCPVWCHSVARATTLPTSPG-----GAE---QVVDSSFDAPKVKLLKQKMEL 79
Query: 81 VGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140
+GIN + SC+PG+Y +L CPKCKGG ERSLS HII D +FAMWRCFR CGWAG+
Sbjct: 80 LGINLEKSCLPGKYHNLFCPKCKGGQLK-ERSLSFHIISDCEFAMWRCFRAQCGWAGQVS 138
Query: 141 AGSNKIRKVMSS-----RQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQ 195
A ++ + + RQ+AE+SLGLEPLG +++AY GER+ISE TL RN+V Q +++
Sbjct: 139 ADDKELYSGVCTNANLYRQLAEESLGLEPLGPEVVAYFGERLISEKTLSRNAVRQLSNNK 198
Query: 196 A-IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVE 254
IAF Y NG+LVGCKYR+ME++F Q KG +K LYG+DDI++ +E+IIVEGEIDKLS+E
Sbjct: 199 TVIAFTYKQNGLLVGCKYRTMEKRFWQGKGADKILYGIDDISQASEIIIVEGEIDKLSLE 258
Query: 255 EAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHA 314
EAGFQNCVSVP GAP KVS+++LPP EKDT ++YLWNCKE+LDK RIIL TD D PG A
Sbjct: 259 EAGFQNCVSVPVGAPEKVSSKDLPPIEKDTAFRYLWNCKEYLDKAVRIILATDNDPPGQA 318
Query: 315 LAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
LAEELARRLG++RCWRV WPKKDEFS FKDANEVLK +G AL++++ENAE Y
Sbjct: 319 LAEELARRLGRERCWRVLWPKKDEFSSFKDANEVLKYMGADALKKLVENAEPY 371
>gi|449435924|ref|XP_004135744.1| PREDICTED: uncharacterized protein LOC101219541 [Cucumis sativus]
Length = 329
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/317 (60%), Positives = 237/317 (74%), Gaps = 21/317 (6%)
Query: 76 QKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135
+++ LVGI CD+ CIPG+Y L CPKCKGG R +ERSLS+H+I GDFAMWRCF+ +CGW
Sbjct: 2 ERMDLVGIVCDEHCIPGKYYCLFCPKCKGG-RLMERSLSLHVIPTGDFAMWRCFQFECGW 60
Query: 136 AGRAFA-------GSNKIRKVMSSRQVAEKSLGLEPLGE----------KLIAYLGERMI 178
AG+ FA G KI K++ + +++SL LEPL + +LI+Y RMI
Sbjct: 61 AGQIFADGKLAFNGFGKITKMVG--RSSKESLVLEPLCDEMFFRMVRSPQLISYFSMRMI 118
Query: 179 SEGTLQRNSVMQRLHDQA-IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINE 237
S+ TL+RN VMQ Q IAF Y NG LVGCKYR+M+++F QEKGT K+LYG+DDIN+
Sbjct: 119 SQETLERNVVMQLAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDIND 178
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLD 297
E+IIVEGE+DKLSVEEAGF NC+SVP GAP KVS +PP EKDT YQYLW+CK++LD
Sbjct: 179 ADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLD 238
Query: 298 KVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGAL 357
KVSR+IL TD+D PG ALAEELARRLGK+RCWRV WP KD F+ FKDANEVL LGP AL
Sbjct: 239 KVSRVILATDSDVPGQALAEELARRLGKNRCWRVSWPYKDGFNRFKDANEVLVHLGPDAL 298
Query: 358 REVIENAELYQLHVSEE 374
++ IE+A+ YQL S +
Sbjct: 299 KKAIEDAKFYQLSSSNQ 315
>gi|357495669|ref|XP_003618123.1| hypothetical protein MTR_5g099220 [Medicago truncatula]
gi|355519458|gb|AET01082.1| hypothetical protein MTR_5g099220 [Medicago truncatula]
Length = 331
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/301 (62%), Positives = 233/301 (77%), Gaps = 9/301 (2%)
Query: 69 SKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRC 128
+K+ +K K++ +GI+ D+SC+PG Y +L CPKCKGG + +ERSLS HII DG+FA+WRC
Sbjct: 34 TKVKILKHKVEPLGISLDNSCLPGNYHNLFCPKCKGG-QLMERSLSFHIITDGEFAIWRC 92
Query: 129 FRVDCGWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSV 188
FR CGWAG+ A ++ + E+SLGLEPLG KL+AY ER+ISE TL RNSV
Sbjct: 93 FRPICGWAGQVSADDKEL-----DNKPDEESLGLEPLGPKLVAYFKERLISEKTLSRNSV 147
Query: 189 MQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEG 246
Q L D+ IAF Y NG++VGCKYR+ME++F Q K +K LYGLDDI+ E+IIVEG
Sbjct: 148 RQ-LSDEKNVIAFTYKQNGLIVGCKYRTMEKRFWQGKVIDKVLYGLDDISHATEIIIVEG 206
Query: 247 EIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGT 306
EIDKLS+EEAG+QNCVSVP GAP KVS+++ PP EKDT YQYLWN K++LDKV RIIL T
Sbjct: 207 EIDKLSLEEAGYQNCVSVPDGAPGKVSSKDPPPIEKDTAYQYLWNSKDYLDKVVRIILAT 266
Query: 307 DADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAEL 366
D D PG ALAEELARRLG++RCW+VRWPKKDE S+FKDANEVLK +G AL+ ++E AE
Sbjct: 267 DNDPPGQALAEELARRLGRERCWQVRWPKKDELSFFKDANEVLKYMGANALKRIVEKAEP 326
Query: 367 Y 367
Y
Sbjct: 327 Y 327
>gi|359483742|ref|XP_002268125.2| PREDICTED: uncharacterized protein LOC100247384 [Vitis vinifera]
Length = 519
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 235/325 (72%), Gaps = 14/325 (4%)
Query: 58 FGEHKDDTIDIS-KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVH 116
+ E+ +DT + S +L +K+KL+++G + I G Y+HL CP CKGG S+E+SLS+
Sbjct: 94 YSENPEDTSNSSARLNVLKKKLEVIGFDTQMLKI-GHYSHLTCPTCKGGD-SMEKSLSLF 151
Query: 117 IIQDGDFAMWRCFRVDCGWAG--RAFAGS-------NKIRKVMSSRQVAEKSLGLEPLGE 167
I DGD+A+W C + CGW G RAF N+I K+ R++ EKSLGL+PL
Sbjct: 152 ITLDGDYAVWVCHQGKCGWRGNIRAFVNDSSSYGRLNQITKIKPKREITEKSLGLKPLCS 211
Query: 168 KLIAYLGERMISEGTLQRNSVMQRLH-DQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGT 225
+L+AY GERMISE TL RNSVMQ+ + DQ IAF Y NGVLV CKYR + + F QEK T
Sbjct: 212 ELVAYFGERMISEKTLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDT 271
Query: 226 EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
EK YG+DDI E +++IIVEGEIDKLS+EEAGF NCVSVP GAPP VS + EKD
Sbjct: 272 EKIFYGVDDIKEASDIIIVEGEIDKLSMEEAGFYNCVSVPDGAPPSVSTKVFESEEKDIK 331
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDA 345
YQYLWNCKE+L+K SRIIL TD D PG ALAEELARRLG++RCW+V+WPKK+E +FKDA
Sbjct: 332 YQYLWNCKEYLEKASRIILATDGDAPGLALAEELARRLGRERCWQVKWPKKNEVEHFKDA 391
Query: 346 NEVLKCLGPGALREVIENAELYQLH 370
NEVL LGP L++VIENAE+Y +
Sbjct: 392 NEVLMYLGPDVLKKVIENAEVYPIQ 416
>gi|296089225|emb|CBI38997.3| unnamed protein product [Vitis vinifera]
Length = 276
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/272 (68%), Positives = 211/272 (77%), Gaps = 8/272 (2%)
Query: 109 LERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLGEK 168
+ERSLS+HI QD +FAMWRCFR CGWAGR F S+ +++ + SLGLEPLG+K
Sbjct: 1 MERSLSLHITQDRNFAMWRCFRSTCGWAGRVFPESSAAYSEVTNNWMTVDSLGLEPLGDK 60
Query: 169 LIAYLGERMISEGTLQRNSVMQRLHDQA--------IAFPYWHNGVLVGCKYRSMERKFR 220
LIAY GERMISE TL RN+VMQ +Q+ IA Y NG LVGCKYRSM ++F
Sbjct: 61 LIAYFGERMISEKTLWRNAVMQLSGNQSGQLIIMSVIALTYRQNGRLVGCKYRSMGKRFW 120
Query: 221 QEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPR 280
QEKGTEK LYGLDDI E E+IIVEGE+DKLSVEEAGF NCVSVP GAP KVS +ELP
Sbjct: 121 QEKGTEKILYGLDDIQEANEIIIVEGEVDKLSVEEAGFCNCVSVPGGAPQKVSAKELPSL 180
Query: 281 EKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFS 340
+KDT Y YLWNCKE+LDK SRIIL TD D+PG ALAEELARRLGK+RCWRV WPKK++ S
Sbjct: 181 DKDTAYHYLWNCKEYLDKASRIILATDGDSPGQALAEELARRLGKERCWRVSWPKKEDSS 240
Query: 341 YFKDANEVLKCLGPGALREVIENAELYQLHVS 372
FKDANEVLK LG ALREVIENAELY+++ S
Sbjct: 241 CFKDANEVLKNLGADALREVIENAELYEVNSS 272
>gi|297740895|emb|CBI31077.3| unnamed protein product [Vitis vinifera]
Length = 460
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 235/325 (72%), Gaps = 14/325 (4%)
Query: 58 FGEHKDDTIDIS-KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVH 116
+ E+ +DT + S +L +K+KL+++G + I G Y+HL CP CKGG S+E+SLS+
Sbjct: 94 YSENPEDTSNSSARLNVLKKKLEVIGFDTQMLKI-GHYSHLTCPTCKGGD-SMEKSLSLF 151
Query: 117 IIQDGDFAMWRCFRVDCGWAG--RAFAGS-------NKIRKVMSSRQVAEKSLGLEPLGE 167
I DGD+A+W C + CGW G RAF N+I K+ R++ EKSLGL+PL
Sbjct: 152 ITLDGDYAVWVCHQGKCGWRGNIRAFVNDSSSYGRLNQITKIKPKREITEKSLGLKPLCS 211
Query: 168 KLIAYLGERMISEGTLQRNSVMQRLH-DQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGT 225
+L+AY GERMISE TL RNSVMQ+ + DQ IAF Y NGVLV CKYR + + F QEK T
Sbjct: 212 ELVAYFGERMISEKTLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDT 271
Query: 226 EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
EK YG+DDI E +++IIVEGEIDKLS+EEAGF NCVSVP GAPP VS + EKD
Sbjct: 272 EKIFYGVDDIKEASDIIIVEGEIDKLSMEEAGFYNCVSVPDGAPPSVSTKVFESEEKDIK 331
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDA 345
YQYLWNCKE+L+K SRIIL TD D PG ALAEELARRLG++RCW+V+WPKK+E +FKDA
Sbjct: 332 YQYLWNCKEYLEKASRIILATDGDAPGLALAEELARRLGRERCWQVKWPKKNEVEHFKDA 391
Query: 346 NEVLKCLGPGALREVIENAELYQLH 370
NEVL LGP L++VIENAE+Y +
Sbjct: 392 NEVLMYLGPDVLKKVIENAEVYPIQ 416
>gi|302141745|emb|CBI18948.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 198/380 (52%), Positives = 254/380 (66%), Gaps = 15/380 (3%)
Query: 4 RIMQPGHLSLTNGLATTSSVTVPRRLGRVWSRLLSYPTHVTGNP-SLQCNSDAESFGEHK 62
++++ L+L L S VT+ + SR+L + P + N + E+
Sbjct: 38 QLLKSTPLTLPLRLNLYSPVTISAFPLKSTSRILPVSLKTSALPYTSHSNVPRPVYSENP 97
Query: 63 DDTIDIS-KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDG 121
+DT + S + +K+KL+ +G + G+Y +LLCP CKGG S+E+SLS+ I DG
Sbjct: 98 EDTSNFSARFNVLKKKLEAIGFDTQ-MLKTGQYDNLLCPACKGG-YSMEKSLSLVITLDG 155
Query: 122 DFAMWRCFRVDCGWAG--RAFAGS-------NKIRKVMSSRQVAEKSLGLEPLGEKLIAY 172
+ A+W C R CGW G RAFA N+I K+ R++ EKSLGLEPL +LIAY
Sbjct: 156 NCAVWTCHRGKCGWRGDTRAFANGRSSYGRLNQITKIKPKREITEKSLGLEPLCRELIAY 215
Query: 173 LGERMISEGTLQRNSVMQRLH--DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLY 230
GERMISE TL RNSVMQ+ + + IAF Y NGV V CKYR + + F QE+ TEK Y
Sbjct: 216 FGERMISEKTLARNSVMQKTYGDEFIIAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFY 275
Query: 231 GLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW 290
G+DDI +++IIVEGEIDKLS+EEAGF NCVSVP+GAP VS + E+DT YQYLW
Sbjct: 276 GVDDIKAASDIIIVEGEIDKLSMEEAGFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLW 335
Query: 291 NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLK 350
NCKE+L+K SRIIL TD D+PG ALAEELARRLG++RCWRV+WPKK+E +FKDANEVL
Sbjct: 336 NCKEYLEKASRIILATDGDSPGLALAEELARRLGRERCWRVKWPKKNEVDHFKDANEVLM 395
Query: 351 CLGPGALREVIENAELYQLH 370
LGP AL+EVIENAELY +
Sbjct: 396 YLGPDALKEVIENAELYPIQ 415
>gi|225444145|ref|XP_002268852.1| PREDICTED: uncharacterized protein LOC100257655 [Vitis vinifera]
gi|297740887|emb|CBI31069.3| unnamed protein product [Vitis vinifera]
Length = 705
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 189/333 (56%), Positives = 234/333 (70%), Gaps = 14/333 (4%)
Query: 50 QCNSDAESFGEHKDDTIDIS-KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRS 108
N + E+ +DT + S +L +K+KL+++G + G+Y+HL CP CKGG S
Sbjct: 86 HSNVPGPVYSENPEDTSNSSARLNVLKKKLEVIGFDTQ-MLKTGQYSHLTCPTCKGGD-S 143
Query: 109 LERSLSVHIIQDGDFAMWRCFRVDCGWAG--RAFAGS-------NKIRKVMSSRQVAEKS 159
+E+SLS+ I DGD A+W C R CG G RAF N+I K+ R++ E+S
Sbjct: 144 MEKSLSLFITLDGDHAVWMCHRGKCGSRGNIRAFVNDSSSYGRLNQITKIKPKREITEES 203
Query: 160 LGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLH-DQ-AIAFPYWHNGVLVGCKYRSMER 217
LGL+PL +L+AY GERMISE TL RNSVMQ+ + DQ IAF Y NGVLV CKYR + +
Sbjct: 204 LGLKPLCSELVAYFGERMISEKTLARNSVMQKSYGDQFIIAFTYRRNGVLVSCKYRDVNK 263
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F QEK TEK YG+DDI E +++IIVEGEIDKLS+EEAGF NCVSVP GAPP VS +
Sbjct: 264 NFWQEKDTEKIFYGVDDIKEASDIIIVEGEIDKLSMEEAGFYNCVSVPDGAPPSVSTKVF 323
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
EKD YQYLWNCKE+L+K SRIIL TD D PG ALAEELARRLG++RCWRV+WPKK+
Sbjct: 324 ESAEKDIKYQYLWNCKEYLEKASRIILATDGDAPGLALAEELARRLGRERCWRVKWPKKN 383
Query: 338 EFSYFKDANEVLKCLGPGALREVIENAELYQLH 370
E +FKDANEVL LGP L+EVIENAE+Y +
Sbjct: 384 EVEHFKDANEVLMYLGPDVLKEVIENAEIYPIQ 416
>gi|449515949|ref|XP_004165010.1| PREDICTED: uncharacterized protein LOC101227451, partial [Cucumis
sativus]
Length = 278
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 178/280 (63%), Positives = 217/280 (77%), Gaps = 11/280 (3%)
Query: 76 QKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135
+++ LVGI CD+ CIPG+Y L CPKCKGG R +ERSLS+H+I GDFAMWRCF+ +CGW
Sbjct: 2 ERMDLVGIVCDEHCIPGKYYCLFCPKCKGG-RLMERSLSLHVIPTGDFAMWRCFQFECGW 60
Query: 136 AGRAFA-------GSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSV 188
AG+ FA G KI K++ + +++SL LEPL ++LI+Y RMIS+ L+RN V
Sbjct: 61 AGQIFADGKLAFNGFGKITKMVG--RSSKESLVLEPLCDELISYFSMRMISQEILERNVV 118
Query: 189 MQRLHDQA-IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGE 247
MQ Q IAF Y NG LVGCKYR+M+++F QEKGT K+LYG+DDIN+ E+IIVEGE
Sbjct: 119 MQLAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGE 178
Query: 248 IDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTD 307
+DKLSVEEAGF NC+SVP GAP KVS +PP EKDT YQYLW+CK++LDKVSRIIL TD
Sbjct: 179 MDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRIILATD 238
Query: 308 ADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANE 347
+D PG ALAEELARRLGK+RCWRV WP KD F+ FKDANE
Sbjct: 239 SDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANE 278
>gi|255564299|ref|XP_002523146.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223537553|gb|EEF39177.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 700
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/315 (55%), Positives = 227/315 (72%), Gaps = 18/315 (5%)
Query: 71 LTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFR 130
L +++ KL+++GI ++ +PG+Y+ LLCP C GG +S ERSLS+ I DG A W CFR
Sbjct: 100 LEKLRGKLEVLGIQMEN-LVPGQYSSLLCPMCNGG-QSGERSLSLFISPDGANATWNCFR 157
Query: 131 VDCGWAG-------RAFAG-------SNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGER 176
CGW G +++AG S + +KV +R++ + LGL+PL +++ + ER
Sbjct: 158 GKCGWNGGTKLLLVQSYAGRHSTYESSVQPKKVKLTRKITVEGLGLQPLCTEILGFFAER 217
Query: 177 MISEGTLQRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDD 234
+IS TL RN VMQR + IAF YW NG L CKYR + + F QE T+K YGLDD
Sbjct: 218 LISAETLHRNRVMQRSYGNQIVIAFTYWRNGELTSCKYRDINKNFWQESDTDKIFYGLDD 277
Query: 235 INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKE 294
I ET ++IIVEGE+DKL++EEAGF+NCVSVP GAP +VS +ELP +E+DT YQYLWNCKE
Sbjct: 278 IKETDDIIIVEGEMDKLAMEEAGFRNCVSVPDGAPGQVSQKELPSKEQDTKYQYLWNCKE 337
Query: 295 HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGP 354
+LDK SRIIL TD D PG ALAEE+ARR+G++RCWR+RWPKK + ++FKDANEVL LGP
Sbjct: 338 YLDKASRIILATDGDPPGQALAEEIARRIGRERCWRIRWPKKSKDTHFKDANEVLMYLGP 397
Query: 355 GALREVIENAELYQL 369
ALREVI+NAELY +
Sbjct: 398 TALREVIDNAELYPI 412
>gi|224056777|ref|XP_002299018.1| predicted protein [Populus trichocarpa]
gi|222846276|gb|EEE83823.1| predicted protein [Populus trichocarpa]
Length = 658
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/344 (54%), Positives = 226/344 (65%), Gaps = 39/344 (11%)
Query: 63 DDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGD 122
D + SKL ++ KL VGI D PG+Y L CP CKGGG S E+S S+ I DG
Sbjct: 17 DPEVKKSKLEILRFKLAEVGIELDHFA-PGQYNALTCPMCKGGG-SKEKSFSLFISADGG 74
Query: 123 FAMWRCFRVDCGWAG--RAFAGSN-------KIRKVMSSRQVAEKSLGLEPLGEKLIA-- 171
A W CFR CGW G + FAGS K+ KV R++ E+SL LEPL ++++A
Sbjct: 75 NASWNCFRAKCGWNGGTKPFAGSKSTYGTSLKLSKVKEIREITEQSLELEPLCDEVVALS 134
Query: 172 ----------------------YLGERMISEGTLQRNSVMQRLHDQ----AIAFPYWHNG 205
Y ER+IS TL RN VMQ+ + AIAF Y NG
Sbjct: 135 FYLCVLILILSCMMLIWVMLVCYFKERLISAETLARNQVMQKGYGDRGQVAIAFTYRRNG 194
Query: 206 VLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVP 265
VLV CKYR + ++F QEK T+K YGLDDI E+IIVEGE+DKL++EEAGF+NCVSVP
Sbjct: 195 VLVSCKYRDINKRFWQEKDTKKVFYGLDDIKGADEIIIVEGEMDKLAMEEAGFRNCVSVP 254
Query: 266 SGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGK 325
GAPP VS +ELPP ++DT YQYLWNCKE+LDKVSRIIL TD D PG ALAEELARRLG+
Sbjct: 255 DGAPPSVSPKELPPNQEDTKYQYLWNCKEYLDKVSRIILATDGDPPGQALAEELARRLGR 314
Query: 326 DRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
+RCWRV+WPKK+ +FKDANEVL GP ALR++IENAELY +
Sbjct: 315 ERCWRVKWPKKNTDEHFKDANEVLMFSGPLALRDIIENAELYPI 358
>gi|356555942|ref|XP_003546288.1| PREDICTED: uncharacterized protein LOC100779625 [Glycine max]
Length = 678
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/308 (56%), Positives = 221/308 (71%), Gaps = 10/308 (3%)
Query: 70 KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCF 129
+L +K+KL+ +G+ C PG+Y HLLCP+C GG + ERSLS++I DG A W CF
Sbjct: 79 QLNILKKKLEAIGMETG-MCEPGQYNHLLCPECLGGDQE-ERSLSLYIAPDGGSAAWNCF 136
Query: 130 RVDCGWAG--RAFAGSNKIRK----VMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTL 183
R CGW G +AFAGS+ R V R++ E+ L LEPL ++L+ Y ER+IS+ TL
Sbjct: 137 RGKCGWKGSTQAFAGSSSARTQVDPVKKIRKITEEELELEPLCDELVVYFSERLISKQTL 196
Query: 184 QRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEV 241
+RN V QR +D IAFPY NG L+ CKYR + + F QE TEK YGLDDI +++
Sbjct: 197 ERNGVKQRKYDDQIVIAFPYRRNGGLISCKYRDINKMFWQEANTEKIFYGLDDIVGHSDI 256
Query: 242 IIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSR 301
IIVEGE+DKL++EEAGF NCVSVP GAPP +S++ELPP++KD YQYLWNCK+ L K +R
Sbjct: 257 IIVEGEMDKLAMEEAGFLNCVSVPDGAPPSISSKELPPQDKDKKYQYLWNCKDELKKATR 316
Query: 302 IILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVI 361
+IL TD D PG ALAEELARR+GK++CWRVRWP+K KDANEVL LGP AL+EVI
Sbjct: 317 VILATDGDPPGQALAEELARRIGKEKCWRVRWPRKSRSDNCKDANEVLMYLGPDALKEVI 376
Query: 362 ENAELYQL 369
ENAELY +
Sbjct: 377 ENAELYPI 384
>gi|356532467|ref|XP_003534794.1| PREDICTED: uncharacterized protein LOC100804637 [Glycine max]
Length = 679
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/309 (56%), Positives = 222/309 (71%), Gaps = 11/309 (3%)
Query: 70 KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCF 129
+L +K+KL+ +G+ + C PG+Y HLLCP+C GG + ERSLS++I DG A W CF
Sbjct: 79 QLNILKKKLEAIGVETE-MCEPGQYNHLLCPECLGGDQE-ERSLSLYIAPDGGSAAWNCF 136
Query: 130 RVDCGWAG--RAFAGSNKIRKVMSS----RQVAEKSLGLEPLGEKLIAYLGERMISEGTL 183
R CGW G +AFAGSN R ++ R++ E+ L LEPL ++L+ Y ER+IS+ TL
Sbjct: 137 RGKCGWKGSTQAFAGSNSARTQLAPVKKIRKITEEELELEPLCDELVTYFSERLISKQTL 196
Query: 184 QRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEV 241
+RN V QR +D IAFPY NG L+ CKYR + + F QE TEK YGLDDI ++
Sbjct: 197 ERNGVKQRKYDDQIVIAFPYHQNGGLISCKYRDINKMFWQEANTEKIFYGLDDIVGHNDI 256
Query: 242 IIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRE-LPPREKDTGYQYLWNCKEHLDKVS 300
IIVEGE+DKL++EEAGF NCVSVP GAPP VS++E LPP++KD YQYLWNCK+ L K +
Sbjct: 257 IIVEGEMDKLAMEEAGFFNCVSVPDGAPPSVSSKEELPPQDKDKKYQYLWNCKDELKKAT 316
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREV 360
R+IL TD D PG ALAEELARR+GK++CWRVRWP+K KDANEVL LGP AL+EV
Sbjct: 317 RVILATDGDPPGQALAEELARRIGKEKCWRVRWPRKSRSDNCKDANEVLMYLGPDALKEV 376
Query: 361 IENAELYQL 369
IENAELY +
Sbjct: 377 IENAELYPI 385
>gi|218198730|gb|EEC81157.1| hypothetical protein OsI_24073 [Oryza sativa Indica Group]
gi|222636070|gb|EEE66202.1| hypothetical protein OsJ_22328 [Oryza sativa Japonica Group]
Length = 698
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 220/324 (67%), Gaps = 29/324 (8%)
Query: 70 KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCF 129
+L ++ ++LK GI+ + G Y ++CPKC GG + E SLSV I DG A W+CF
Sbjct: 86 RLGQLIERLKKEGISPKQWRL-GTYQRMMCPKCNGGS-TEEPSLSVMIRMDGKNAAWQCF 143
Query: 130 RVDCGWAGRAFAGSNKIRKVMSS----------------------RQVAEKSLGLEPLGE 167
R +CGW G F + + K+ + R++ E+ L LEPL +
Sbjct: 144 RANCGWKG--FVEPDGVLKLSQAKNNTECETDQDGEANLAVNKVYRKICEEDLHLEPLCD 201
Query: 168 KLIAYLGERMISEGTLQRNSVMQR--LHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGT 225
+L+ Y ERMIS TL+RNSVMQR + IAF Y +GVLVGCKYR + +KF QE T
Sbjct: 202 ELVTYFSERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGVLVGCKYREVSKKFSQEANT 261
Query: 226 EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
EK LYGLDDI ++IIVEGEIDKLS+EEAG++NCVSVP GAPPKVS++ LP +++D
Sbjct: 262 EKILYGLDDIKRARDIIIVEGEIDKLSMEEAGYRNCVSVPDGAPPKVSSK-LPDKDQDKK 320
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDA 345
YQYLWNCKE+LD SRIIL TDAD PG ALAEELARRLGK+RCWRV WPKK+E KDA
Sbjct: 321 YQYLWNCKEYLDPASRIILATDADPPGQALAEELARRLGKERCWRVNWPKKNENEICKDA 380
Query: 346 NEVLKCLGPGALREVIENAELYQL 369
NEVL LGP ALR+VIE+AELY +
Sbjct: 381 NEVLMFLGPQALRKVIEDAELYPI 404
>gi|413943393|gb|AFW76042.1| hypothetical protein ZEAMMB73_832314 [Zea mays]
Length = 736
Score = 320 bits (819), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 185/375 (49%), Positives = 235/375 (62%), Gaps = 28/375 (7%)
Query: 17 LATTSSVTVPRRLGRVWSRLLSYPTHVTGNPSLQCNSDAESFGEHKDDTIDISKLTEVKQ 76
L + S VPRR V + S P P+ C+ + S + T +L ++ Q
Sbjct: 48 LHSFSPGRVPRR-PEVVCCVRSAPDSRRSAPAPPCSRNVLSAKNYS--TASEERLGKIIQ 104
Query: 77 KLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWA 136
KLK GIN + G + +LCP+C GG S E SLSV+I +DG A W CFR CGW
Sbjct: 105 KLKNEGINPKQWRL-GNFQRMLCPQCNGGS-SEELSLSVYIRKDGINATWNCFRSKCGWR 162
Query: 137 GRAFA-GSNKIRKVMSS-------------------RQVAEKSLGLEPLGEKLIAYLGER 176
G A G I + S R+++++ L LEPL ++L+ Y R
Sbjct: 163 GFVQADGVTNISQGKSGIESETDQEVEAKKAANKVYRKISDEDLNLEPLCDELVEYFATR 222
Query: 177 MISEGTLQRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDD 234
MIS TL+RN VMQR + +IAF Y +G LVGCKYR++++ F QE TEK YGLDD
Sbjct: 223 MISAETLRRNKVMQRNWNNKISIAFTYRRDGALVGCKYRAVDKTFSQEANTEKIFYGLDD 282
Query: 235 INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKE 294
I +VIIVEGEIDKLS++EAG++NCVSVP GAPPKVS++ +P +E+D Y YLWNCK+
Sbjct: 283 IKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDGAPPKVSSK-IPDQEQDKKYSYLWNCKD 341
Query: 295 HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGP 354
+LD SRIIL TD D PG ALAEELARRLGK+RCWRV WPKK++ KDANEVL LGP
Sbjct: 342 YLDSASRIILATDNDRPGQALAEELARRLGKERCWRVNWPKKNDTDTCKDANEVLMFLGP 401
Query: 355 GALREVIENAELYQL 369
ALR+VIE+AELY +
Sbjct: 402 QALRKVIEDAELYPI 416
>gi|242093886|ref|XP_002437433.1| hypothetical protein SORBIDRAFT_10g026990 [Sorghum bicolor]
gi|241915656|gb|EER88800.1| hypothetical protein SORBIDRAFT_10g026990 [Sorghum bicolor]
Length = 770
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/324 (53%), Positives = 217/324 (66%), Gaps = 29/324 (8%)
Query: 70 KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCF 129
+L ++ QKLK GIN + G + +LCP+C GG S E SLSV+I +DG A W CF
Sbjct: 104 RLGQLIQKLKNEGINPKQWRL-GNFQRMLCPQCNGGS-SEELSLSVYIRKDGMNATWNCF 161
Query: 130 RVDCGWAGRAFAGSNKIRKVMSS----------------------RQVAEKSLGLEPLGE 167
R CGW R F ++ + + R+V E+ L LEPL +
Sbjct: 162 RSKCGW--RGFIQADGVTNISQGKTDIESETDQEVESKKTANKVYRKVIEEDLNLEPLCD 219
Query: 168 KLIAYLGERMISEGTLQRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGT 225
+L+ Y RMIS TL+RN VMQR + +IAF Y +GVLVGCKYR++++ F QE T
Sbjct: 220 ELVEYFSTRMISAETLRRNKVMQRNWNNKISIAFTYRRDGVLVGCKYRAVDKTFSQEPNT 279
Query: 226 EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
EK YGLDDI +VIIVEGEIDKLS++EAG++NCVSVP GAPPKVS++ +P +E+D
Sbjct: 280 EKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDGAPPKVSSK-IPDKEQDKK 338
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDA 345
Y YLWNCK++LD SRIIL TD D PG ALAEELARRLGK+RCWRV+WPKK++ KDA
Sbjct: 339 YNYLWNCKDYLDSASRIILATDDDGPGQALAEELARRLGKERCWRVKWPKKNDTDTCKDA 398
Query: 346 NEVLKCLGPGALREVIENAELYQL 369
NEVL LGP ALR+VIE+AELY +
Sbjct: 399 NEVLMFLGPQALRKVIEDAELYPI 422
>gi|27311757|gb|AAO00844.1| Unknown protein [Arabidopsis thaliana]
Length = 709
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 220/314 (70%), Gaps = 11/314 (3%)
Query: 63 DDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGD 122
D + +S+L +++KL G++ ++ C PG+++ L+CP C+GG S E+SLS+ I DG
Sbjct: 101 DKRVVLSRLVTLRRKLAEQGVDAEN-CPPGQHSGLICPTCEGGN-SGEKSLSLFIAPDGS 158
Query: 123 FAMWRCFRVDCGWAG--RA---FAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERM 177
A W CFR CG G RA A ++ I KV R++ + + LEPL +++ Y R
Sbjct: 159 SATWNCFRGKCGLKGGVRADGGLASADPIEKV--ERKITVEGIELEPLCDEIQDYFAARA 216
Query: 178 ISEGTLQRNSVMQ-RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI 235
IS TL+RN VMQ R+ D+ IAF YW G LV CKYRS+ + F QE+ T + LYGLDDI
Sbjct: 217 ISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDI 276
Query: 236 NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEH 295
+T+EVIIVEGEIDKL++EEAGF NCVSVP GAP KVS++E+P +KDT Y++LWNC ++
Sbjct: 277 EKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDY 336
Query: 296 LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPG 355
L K SRI++ TD D PG A+AEE+ARRLGK+RCWRV+WPKK E +FKDANEVL GP
Sbjct: 337 LKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPH 396
Query: 356 ALREVIENAELYQL 369
L+E I +AE Y +
Sbjct: 397 LLKEAILDAEPYPI 410
>gi|30692010|ref|NP_849735.1| toprim domain-containing protein [Arabidopsis thaliana]
gi|209529811|gb|ACI49800.1| At1g30680 [Arabidopsis thaliana]
gi|332193138|gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana]
Length = 709
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 220/314 (70%), Gaps = 11/314 (3%)
Query: 63 DDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGD 122
D + +S+L +++KL G++ ++ C PG+++ L+CP C+GG S E+SLS+ I DG
Sbjct: 101 DKRVVLSRLVTLRRKLAEQGVDAEN-CPPGQHSGLICPTCEGGN-SGEKSLSLFIAPDGS 158
Query: 123 FAMWRCFRVDCGWAG--RA---FAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERM 177
A W CFR CG G RA A ++ I KV R++ + + LEPL +++ Y R
Sbjct: 159 SATWNCFRGKCGLKGGVRADGGLASADPIEKV--ERKITVEGIELEPLCDEIQDYFAARA 216
Query: 178 ISEGTLQRNSVMQ-RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI 235
IS TL+RN VMQ R+ D+ IAF YW G LV CKYRS+ + F QE+ T + LYGLDDI
Sbjct: 217 ISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDI 276
Query: 236 NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEH 295
+T+EVIIVEGEIDKL++EEAGF NCVSVP GAP KVS++E+P +KDT Y++LWNC ++
Sbjct: 277 EKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDY 336
Query: 296 LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPG 355
L K SRI++ TD D PG A+AEE+ARRLGK+RCWRV+WPKK E +FKDANEVL GP
Sbjct: 337 LKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPH 396
Query: 356 ALREVIENAELYQL 369
L+E I +AE Y +
Sbjct: 397 LLKEAILDAEPYPI 410
>gi|240254185|ref|NP_174354.4| nucleic acid binding protein [Arabidopsis thaliana]
gi|332193136|gb|AEE31257.1| nucleic acid binding protein [Arabidopsis thaliana]
Length = 337
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/309 (52%), Positives = 208/309 (67%), Gaps = 12/309 (3%)
Query: 68 ISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWR 127
+SKL + +KL GI+ + C PG + L+CPKC+ G S E+SL+++I DG A W
Sbjct: 32 LSKLVTLMRKLSEQGIDAQN-CPPGVRSCLICPKCEVGD-SGEKSLTLYIYPDGSSAKWT 89
Query: 128 CFRVDCGWAGR-----AFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGT 182
C R CG G + I KV R++ +S+ LEPL +++ + R IS T
Sbjct: 90 C-RRKCGLKGVLQVDGKLVSKDPIGKV--ERKITVESIKLEPLCDEIQDFFAARAISGKT 146
Query: 183 LQRNSVMQ-RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAE 240
L+RN VMQ R+ D+ IAF YW G LV CKYRS+ +KF QE+ T K LYGLDDI ET+E
Sbjct: 147 LERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEETSE 206
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVS 300
+IIVEGE DKL++EEAGF NCVSVP GAP VS++E+P KDT ++Y+WNC ++L K S
Sbjct: 207 IIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKKAS 266
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREV 360
RI++ TD D PG ALAEELARRLGK+RCW V+WPKK E +FKDANEVL GP L+E
Sbjct: 267 RIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLKEA 326
Query: 361 IENAELYQL 369
I NAE Y L
Sbjct: 327 ILNAEPYPL 335
>gi|449488512|ref|XP_004158064.1| PREDICTED: twinkle protein, mitochondrial-like [Cucumis sativus]
Length = 679
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 159/370 (42%), Positives = 223/370 (60%), Gaps = 59/370 (15%)
Query: 2 PVRIMQPGHLSLTNGLATTSSVTVPRRLGRVWSRLLSYPTHVTGNPSLQCNSDAESFGEH 61
P+ +++P + + TS VPR P + NP + +S
Sbjct: 72 PMSLVKPFAMKPNGVSSFTSHANVPR------------PPALLENPPDKASSS------- 112
Query: 62 KDDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDG 121
++L +++KL+ + I+ + +C+PG++ LLCP GRS + L G
Sbjct: 113 -------TRLNILRKKLQDLDIDIE-ACVPGQFYSLLCPMAFADGRSSYKHL-------G 157
Query: 122 DFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEG 181
A+ IRK+ +SL LEPL ++L+ Y ER+IS+
Sbjct: 158 QVAL-----------------KQNIRKITV------ESLQLEPLCDQLVDYFAERLISKQ 194
Query: 182 TLQRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETA 239
TL RNSVMQ+ D A+AF Y+ G L+ CKYR +KF QE TE+ YG+DDI+ +
Sbjct: 195 TLLRNSVMQKRSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYGIDDIDGAS 254
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
++IIVEGE+DKLS+ EAG NCVSVP GAP VS +++PP +KD +Q+LWNCK++L+K
Sbjct: 255 DIIIVEGEMDKLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWNCKDYLNKA 314
Query: 300 SRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALRE 359
SRIIL TD DTPG ALAEE+ARR+G++RCWRV+WPKK+E +FKDANEVL LGP AL+E
Sbjct: 315 SRIILATDGDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVLMYLGPEALKE 374
Query: 360 VIENAELYQL 369
V++NAELY +
Sbjct: 375 VVDNAELYPI 384
>gi|52076993|dbj|BAD46002.1| unknown protein [Oryza sativa Japonica Group]
gi|52077236|dbj|BAD46279.1| unknown protein [Oryza sativa Japonica Group]
gi|300116969|dbj|BAJ10651.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 695
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/324 (51%), Positives = 207/324 (63%), Gaps = 45/324 (13%)
Query: 70 KLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCF 129
+L ++ ++LK GI+ + G Y ++CPKC GG + E SLSV I DG A W+CF
Sbjct: 86 RLGQLIERLKKEGISPKQWRL-GTYQRMMCPKCNGGS-TEEPSLSVMIRMDGKNAAWQCF 143
Query: 130 RVDCGWAGRAFAGSNKIRKVMSS----------------------RQVAEKSLGLEPLGE 167
R +CGW G F + + K+ + R++ E+ L LEPL +
Sbjct: 144 RANCGWKG--FVEPDGVLKLSQAKNNTECETDQDGEANLAVNKVYRKICEEDLHLEPLCD 201
Query: 168 KLIAYLGERMISEGTLQRNSVMQR--LHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGT 225
+L+ Y ERMIS TL+RNSVMQR + IAF Y +GVLVGCKYR + +KF QE T
Sbjct: 202 ELVTYFSERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGVLVGCKYREVSKKFSQEANT 261
Query: 226 EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
EK LYGLDDI ++IIVEGEIDKLS+EEAG++NCVSVP GAPPKVS++ LP +
Sbjct: 262 EKILYGLDDIKRARDIIIVEGEIDKLSMEEAGYRNCVSVPDGAPPKVSSK-LPDK----- 315
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDA 345
D+ SRIIL TDAD PG ALAEELARRLGK+RCWRV WPKK+E KDA
Sbjct: 316 -----------DQASRIILATDADPPGQALAEELARRLGKERCWRVNWPKKNENEICKDA 364
Query: 346 NEVLKCLGPGALREVIENAELYQL 369
NEVL LGP ALR+VIE+AELY +
Sbjct: 365 NEVLMFLGPQALRKVIEDAELYPI 388
>gi|4587524|gb|AAD25755.1|AC007060_13 T5I8.13 [Arabidopsis thaliana]
Length = 670
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 157/326 (48%), Positives = 207/326 (63%), Gaps = 39/326 (11%)
Query: 63 DDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGD 122
D + +S+L +++KL G++ ++ C PG+++ L+CP C+GG S E+SLS+ I DG
Sbjct: 79 DKRVVLSRLVTLRRKLAEQGVDAEN-CPPGQHSGLICPTCEGGN-SGEKSLSLFIAPDGS 136
Query: 123 FAMWRCFRVDCGWAG--RA---FAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERM 177
A W CFR CG G RA A ++ I KV R++ + + LEPL +++ Y R
Sbjct: 137 SATWNCFRGKCGLKGGVRADGGLASADPIEKV--ERKITVEGIELEPLCDEIQDYFAARA 194
Query: 178 ISEGTLQRNSVMQ-RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQ------------EK 223
IS TL+RN VMQ R+ D+ IAF YW G LV CKYRS+ + F Q E+
Sbjct: 195 ISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQVHIIQIPFSIADER 254
Query: 224 GTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKD 283
T + LYGLDDI +T+EVIIVEGEIDKL++EEAGF NCVSVP GAP KVS++E+P
Sbjct: 255 KTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSE--- 311
Query: 284 TGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFK 343
DK SRI++ TD D PG A+AEE+ARRLGK+RCWRV+WPKK E +FK
Sbjct: 312 -------------DKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFK 358
Query: 344 DANEVLKCLGPGALREVIENAELYQL 369
DANEVL GP L+E I +AE Y +
Sbjct: 359 DANEVLMSKGPHLLKEAILDAEPYPI 384
>gi|4587522|gb|AAD25753.1|AC007060_11 T5I8.11 [Arabidopsis thaliana]
Length = 314
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/317 (49%), Positives = 197/317 (62%), Gaps = 28/317 (8%)
Query: 60 EHKDDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQ 119
E + +SKL + +KL GI+ + C PG + L+CPKC+ G S E+SL+++I
Sbjct: 17 EEAGKKVVLSKLVTLMRKLSEQGIDAQN-CPPGVRSCLICPKCEVGD-SGEKSLTLYIYP 74
Query: 120 DGDFAMWRCFRVDCGWAGR-----AFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLG 174
DG A W C R CG G + I KV R++ +S+ LEPL +++ +
Sbjct: 75 DGSSAKWTCRR-KCGLKGVLQVDGKLVSKDPIGKV--ERKITVESIKLEPLCDEIQDFFA 131
Query: 175 ERMISEGTLQRNSVMQ-RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGL 232
R IS TL+RN VMQ R+ D+ IAF YW G LV CKYRS+ +KF QE+ T K LYGL
Sbjct: 132 ARAISGKTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGL 191
Query: 233 DDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNC 292
DDI ET+E+IIVEGE DKL++EEAGF NCVSVP GAP VS++E+P
Sbjct: 192 DDIEETSEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSE------------ 239
Query: 293 KEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCL 352
K SRI++ TD D PG ALAEELARRLGK+RCW V+WPKK E +FKDANEVL
Sbjct: 240 ----SKASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSK 295
Query: 353 GPGALREVIENAELYQL 369
GP L+E I NAE Y L
Sbjct: 296 GPHLLKEAILNAEPYPL 312
>gi|297846010|ref|XP_002890886.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336728|gb|EFH67145.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 314
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 195/309 (63%), Gaps = 28/309 (9%)
Query: 68 ISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWR 127
+SKL + +KL GI+ + C PG+ + L+CP C+GG S E++L+++I DG A W
Sbjct: 25 LSKLVTLLRKLAEQGIDVQN-CPPGQRSGLICPTCEGGD-SGEKNLTLYIYPDGSSAKWS 82
Query: 128 CFRVDCGWAGRA-----FAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGT 182
C R CG G + + KV R++ + + L+PL +++ + R IS T
Sbjct: 83 CRR-KCGLKGVVQVDGKLVSKDPMEKV--ERKITVEGIKLQPLCDEIQDFFAARAISVKT 139
Query: 183 LQRNSVMQ-RLHDQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAE 240
L+RN VMQ R+ D+ +AF YW G LV CKYRS+ +KF QE+ T K LYGLDDI + +E
Sbjct: 140 LERNRVMQKRIGDEIMLAFAYWQRGELVSCKYRSLTKKFSQERNTRKILYGLDDIEKASE 199
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVS 300
+IIVEGEIDKL++EEAGF NCVSV GAP VS++E+P KVS
Sbjct: 200 IIIVEGEIDKLAMEEAGFLNCVSVADGAPVTVSSKEIPSE----------------SKVS 243
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREV 360
RI+L TD D PG ALAEELARRLGK+RCW V+WPKK E +FKDANEVL GP L+E
Sbjct: 244 RIVLATDGDVPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPQLLKEA 303
Query: 361 IENAELYQL 369
I NAE Y L
Sbjct: 304 ILNAEPYPL 312
>gi|168040643|ref|XP_001772803.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675880|gb|EDQ62370.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 630
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/293 (48%), Positives = 192/293 (65%), Gaps = 23/293 (7%)
Query: 98 LCPKCKGGGRSLERSLSVHIIQD-GDFAMWRCFRVDCGWAGRAFAG-------------- 142
+CP+C GG S E SL+V I ++ G A+W C R CGW G A+AG
Sbjct: 54 ICPECDGGS-SGELSLAVTIPEEPGTPAIWICHRAKCGWKGSAWAGPLASSVGVKGNGAF 112
Query: 143 -SNKI--RKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQR---LHDQA 196
+ K+ R V+ AE SLGLE + +K+++Y +R +SE T+++N+V Q D A
Sbjct: 113 KAAKVTKRPVLKKDYTAE-SLGLEVVQDKVLSYFKKRGLSEETVRQNNVAQHWANTTDLA 171
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEA 256
IAFPY +G ++ CK+R ++F Q K K LYGLD I ++ E++IVEGE DKL++ EA
Sbjct: 172 IAFPYVQDGEILNCKFRDGNKRFWQVKNAPKVLYGLDHIKDSREIVIVEGEFDKLAMYEA 231
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
G NCVSVP GAP KVS ELPP +D Y+YLWNCK++ +RIIL TDAD PG ALA
Sbjct: 232 GIVNCVSVPDGAPAKVSGDELPPPNEDKKYEYLWNCKDYFKNATRIILATDADEPGQALA 291
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
EELARRLG++RCWRV WP+ + KDANEVL LGP A++++I++AELY +
Sbjct: 292 EELARRLGRERCWRVTWPEDESGKQCKDANEVLMSLGPDAVKDLIKSAELYPI 344
>gi|297846012|ref|XP_002890887.1| toprim domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297336729|gb|EFH67146.1| toprim domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 774
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 207/383 (54%), Gaps = 93/383 (24%)
Query: 60 EHKDDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCP------------------- 100
E D +S+L +++KL GI+ ++ C PG+ + L+CP
Sbjct: 113 EEADKRAVLSRLVTLRRKLAEQGIDAEN-CPPGQSSGLICPTVSISVFLTYLFICQDLST 171
Query: 101 --------------------------KCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCG 134
+C+GG S E+SLS+ I DG A W CFR CG
Sbjct: 172 MWMLLSLMLSVLKKANLDCPLFLWVHQCEGGN-SGEKSLSLFIAPDGSSATWNCFRGKCG 230
Query: 135 WAG--RA---FAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVM 189
G RA A ++ I KV R++ + + LEPL +++ Y R IS TL+RN VM
Sbjct: 231 LKGGVRADGRLASADPIEKV--ERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRVM 288
Query: 190 Q-RLHDQ----------------------AIAFPYWHNGVLVGCKYRSMERKFRQEKGTE 226
Q R+ D+ IAF YW G LV CKYRS+ ++F QE+ T
Sbjct: 289 QKRIGDEFRNPDLSSYMIGSSPVCPTLLIVIAFTYWQRGELVSCKYRSLTKRFFQERNTR 348
Query: 227 KWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGY 286
+ LYGLDDI +T+E+IIVEGEIDKL++EEAGF+NCVSVP GAP VS++E P
Sbjct: 349 RILYGLDDIEKTSEIIIVEGEIDKLAMEEAGFRNCVSVPDGAPASVSSKETPSE------ 402
Query: 287 QYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDAN 346
DK SRI++ TD D PG ALAEE+ARRLGK+RCWRV+WP+K E +FKDAN
Sbjct: 403 ----------DKASRIVIATDGDGPGQALAEEIARRLGKERCWRVKWPEKSEDEHFKDAN 452
Query: 347 EVLKCLGPGALREVIENAELYQL 369
EVL GP L+E I NAE Y +
Sbjct: 453 EVLMSKGPHLLKEAILNAEPYPI 475
>gi|384251819|gb|EIE25296.1| DNA primase core, partial [Coccomyxa subellipsoidea C-169]
Length = 599
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/300 (46%), Positives = 186/300 (62%), Gaps = 24/300 (8%)
Query: 91 PGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAG---SNKIR 147
PG+++ L CPKC GG S E+S S+HI D A W C R CGWAG S R
Sbjct: 18 PGQHSGLTCPKCNGGP-SAEKSFSLHISDDSQSATWICHRGTCGWAGGCNVSGQTSTAER 76
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQ----RLHDQAIAFPYWH 203
KV ++++ L+PL +++ Y +R IS TL+RN V Q + + AIAFPY+
Sbjct: 77 KVEAAKR--PDCSRLQPLSREVVEYFAQRGISRATLERNGVQQEYSSKHNTNAIAFPYYR 134
Query: 204 NGVLVGCKYRSMERKFRQEK--GTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNC 261
+G ++ KYR++++KF Q + LYGLDD+ +AE+IIVEGE+DKL+++EAG +N
Sbjct: 135 DGEIINIKYRTLDKKFWQASIFTPIRILYGLDDVKSSAEIIIVEGEMDKLALDEAGIRNV 194
Query: 262 VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELAR 321
+SVP GAP V +LPP E DT +QYLWNC+ LD+ RI+L TD+D PG ALAEELAR
Sbjct: 195 ISVPDGAPRAVKEGDLPPPEADTKFQYLWNCRAVLDQAVRIVLATDSDAPGQALAEELAR 254
Query: 322 RLGKDRCWRVRWPKKDEFS------------YFKDANEVLKCLGPGALREVIENAELYQL 369
RLG+DRCWRVRWP + + KDANEVL GP L+ +I A+ Y +
Sbjct: 255 RLGRDRCWRVRWPSEPSSTPPDAGDQGAASVARKDANEVLLKDGPEPLQALIRGADPYPI 314
>gi|449435922|ref|XP_004135743.1| PREDICTED: uncharacterized protein LOC101219062 [Cucumis sativus]
Length = 512
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 151/227 (66%), Gaps = 30/227 (13%)
Query: 124 AMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTL 183
A+W CFR CGW G L+ Y ER+IS+ TL
Sbjct: 80 AVWNCFRGKCGWKGHTL----------------------------LVDYFAERLISKQTL 111
Query: 184 QRNSVMQRLHDQ--AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEV 241
RNSVMQ+ D A+AF Y+ G L+ CKYR +KF QE TE+ YG+DDI+ +++
Sbjct: 112 LRNSVMQKRSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYGIDDIDGASDI 171
Query: 242 IIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSR 301
IIVEGE+DKLS+ EAG NCVSVP GAP VS +++PP +KD +Q+LWNCK++L+K SR
Sbjct: 172 IIVEGEMDKLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWNCKDYLNKASR 231
Query: 302 IILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEV 348
IIL TD DTPG ALAEE+ARR+G++RCWRV+WPKK+E +FKDANEV
Sbjct: 232 IILATDGDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEV 278
>gi|359492351|ref|XP_002284693.2| PREDICTED: uncharacterized protein LOC100247126 [Vitis vinifera]
Length = 928
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/174 (67%), Positives = 138/174 (79%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEA 256
IAF Y NGV V CKYR + + F QE+ TEK YG+DDI +++IIVEGEIDKLS+EEA
Sbjct: 33 IAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFYGVDDIKAASDIIIVEGEIDKLSMEEA 92
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
GF NCVSVP+GAP VS + E+DT YQYLWNCKE+L+K SRIIL TD D+PG ALA
Sbjct: 93 GFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLWNCKEYLEKASRIILATDGDSPGLALA 152
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQLH 370
EELARRLG++RCWRV+WPKK+E +FKDANEVL LGP AL+EVIENAELY +
Sbjct: 153 EELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPDALKEVIENAELYPIQ 206
>gi|302757125|ref|XP_002961986.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
gi|300170645|gb|EFJ37246.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
Length = 618
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/300 (46%), Positives = 186/300 (62%), Gaps = 20/300 (6%)
Query: 87 DSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFA----G 142
D G+ L+CP+C GG + E S S+ + +D A+W+C R CG+ G+A G
Sbjct: 2 DDWTLGKEHRLICPQC-NGGTTYEPSFSLRL-EDEWTAIWKCHRSTCGYHGKANVPHENG 59
Query: 143 SNKIRKVMSS---------RQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLH 193
S ++ M++ + + SL L+PL + +I + R IS+ LQRN V Q
Sbjct: 60 SALTKRQMAAAYHWRNPKITEFSRTSLNLQPLSDDVIKWFATRGISQKVLQRNRVEQIYS 119
Query: 194 --DQAIAFPYWHNGVLVGCKYRSM-ERKFRQEKGT-EKWLYGLDDINETAEVIIVEGEID 249
+ AIAFPY+ ++ CKYR++ E++F + +G + YGL+DI EV+IVEGE+D
Sbjct: 120 GSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGAARRTFYGLEDIKGRDEVVIVEGEMD 179
Query: 250 KLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDAD 309
KLS+EEAG NCVSVP GAP K ++ E P E+D + YLW+CKE KV+RI L TDAD
Sbjct: 180 KLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDKKFSYLWDCKEQFGKVTRIFLATDAD 239
Query: 310 TPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
PG ALAEELARR G++RCWRV WP D KDANEVL LGP ALREV+ +ELY +
Sbjct: 240 GPGLALAEELARRFGRERCWRVNWPVVDG-KQLKDANEVLLTLGPEALREVVAKSELYPI 298
>gi|302775366|ref|XP_002971100.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
gi|300161082|gb|EFJ27698.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
Length = 618
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 186/300 (62%), Gaps = 20/300 (6%)
Query: 87 DSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFA----G 142
D G+ L+CP+C GG + E S S+ + +D A+W+C R CG+ G+A G
Sbjct: 2 DDWTLGKEHRLICPQC-NGGTTYEPSFSLRL-EDEWTAIWKCHRSTCGYHGKANVPHENG 59
Query: 143 SNKIRKVMSS---------RQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLH 193
S ++ M++ + + SL L+PL + +I + R IS+ LQRN V Q
Sbjct: 60 SALTKRQMAAAYHWRNPKITEFSRTSLNLQPLSDDVIKWFATRGISQKVLQRNRVEQIYS 119
Query: 194 --DQAIAFPYWHNGVLVGCKYRSM-ERKFRQEKGT-EKWLYGLDDINETAEVIIVEGEID 249
+ AIAFPY+ ++ CKYR++ E++F + +G + YGL+DI EV+IVEGE+D
Sbjct: 120 GSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGAARRTFYGLEDIKGRDEVVIVEGEMD 179
Query: 250 KLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDAD 309
KLS+EEAG NCVSVP GAP K ++ E P E+D + YLW+CKE KV+RI L TDAD
Sbjct: 180 KLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDKKFSYLWDCKEQFGKVTRIFLATDAD 239
Query: 310 TPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
PG ALAEELARR G++RCWRV WP D KDANEVL LGP ALREVI +ELY +
Sbjct: 240 GPGLALAEELARRFGRERCWRVNWPVVDG-KQLKDANEVLLTLGPEALREVIAKSELYPI 298
>gi|145347669|ref|XP_001418285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578514|gb|ABO96578.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 592
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 182/310 (58%), Gaps = 38/310 (12%)
Query: 88 SCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAG--------RA 139
S PG++ ++CP C GG ERSL+VH+ DG A W C R +C W+G RA
Sbjct: 9 SYTPGQH-RIICPTCNGGSTG-ERSLAVHVEDDGKSAAWMCHRANCEWSGGTGMDGRTRA 66
Query: 140 FAGSNKIRKVMSSRQVAEKSL----GLEPLG--------EKLIAYLGERMISEGTLQRNS 187
G++ S+R+VA+ L L+ +G K L R IS T +RN
Sbjct: 67 SKGADG---ATSNRRVAKPKLPAPEDLQRIGPGEMTAAATKWAEMLKSRGISLETAERNG 123
Query: 188 V-MQRLHD-------QAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETA 239
+ +Q ++ A+ FPY +G L+ KYR ++ F Q KG EK LYGLDD+
Sbjct: 124 LAVQSVYSPIASGYVDALCFPYMRDGELINIKYRGPDKTFWQVKGAEKILYGLDDVTGEE 183
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
EVI+VEGE+DKL++EEAGF+N VSVP GAP KV + P E+D Y+YLWNC+ LD +
Sbjct: 184 EVILVEGEMDKLALEEAGFKNVVSVPDGAPGKVKDGPTPAPEEDKKYEYLWNCRAQLDTI 243
Query: 300 SRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALRE 359
SR ++ TD+D PG AL+EELARRLGK+RCWRV WP+ KDANE L+ G +RE
Sbjct: 244 SRFVIATDSDGPGQALSEELARRLGKERCWRVTWPEG-----CKDANEALQKEGADVVRE 298
Query: 360 VIENAELYQL 369
+ AE + L
Sbjct: 299 CLTTAEGFPL 308
>gi|255081288|ref|XP_002507866.1| predicted protein [Micromonas sp. RCC299]
gi|226523142|gb|ACO69124.1| predicted protein [Micromonas sp. RCC299]
Length = 622
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 181/294 (61%), Gaps = 19/294 (6%)
Query: 88 SCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAG---RAFAGSN 144
S PG++ ++CP C GGG + ERSL+VH+ DG W C R C W G R +G+
Sbjct: 50 SYTPGQH-RIVCPSC-GGGSTAERSLAVHVDDDGASCQWMCHRATCEWTGGARRRGSGAG 107
Query: 145 KIRKVMSSRQVAEKSLG-LEPLGEKLIAYLGERMISEGTLQRNSVM-QRL-------HDQ 195
K+ + + G L ++ +L R IS +RN V QR+ H
Sbjct: 108 GAPKLPAPESLERVGPGALTDNAKEWADWLVSRGISLEVAERNGVAAQRVFSPAAGEHVN 167
Query: 196 AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
A+ FPY +G LV KYR ++ F Q KG EK ++GLDDI ++E++IVEGE+DKL++E+
Sbjct: 168 ALVFPYMRDGELVNIKYRGSDKSFWQIKGAEKIMFGLDDIAGSSEIVIVEGEMDKLALEQ 227
Query: 256 AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
AG +N VSVP GAP KV + +LP E+D ++YLWNC+ LD VSRI++ D+D PG AL
Sbjct: 228 AGIKNVVSVPDGAPGKVRDGDLPAPEEDRKFEYLWNCRAALDPVSRIVIAVDSDGPGLAL 287
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
AEELARRLGK+RC+RV WP+ KDAN+VL+ G A+R I+NAE + L
Sbjct: 288 AEELARRLGKERCYRVTWPEG-----CKDANDVLQKEGDAAVRGSIDNAEGFPL 336
>gi|307106874|gb|EFN55118.1| hypothetical protein CHLNCDRAFT_31176, partial [Chlorella
variabilis]
Length = 596
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 146/220 (66%), Gaps = 11/220 (5%)
Query: 125 MWRCFRVDCGWAGRAFA--GSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGT 182
MW CFR CGW GR G++K + RQ +S L +++ + R I+ T
Sbjct: 1 MWNCFRAKCGWTGRVNTRQGTSK-----AYRQYTNESGFDAELSPEVVNFFAGRGITAAT 55
Query: 183 LQRNSVMQR-LHD--QAIAFPYWHNGVLVGCKYRSM-ERKFRQEKGTEKWLYGLDDINET 238
L RN V Q L D AIAFPY+ + LV KYRS+ E+KF Q +G EK L+GLDD+
Sbjct: 56 LVRNRVAQETLADGSTAIAFPYYRDSQLVNIKYRSVGEKKFWQVRGAEKVLFGLDDVVGQ 115
Query: 239 AEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDK 298
+++++VEGE+DKL++EEAGF N VSVP GAP +V E+PP ++DT + YLWNC+ LD+
Sbjct: 116 SDIVVVEGEMDKLALEEAGFTNVVSVPDGAPARVKEGEVPPADQDTKFSYLWNCRAWLDQ 175
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
+++++ TD D PG ALAEELARRLG++RCWRVRWP E
Sbjct: 176 ATKVVIATDNDAPGDALAEELARRLGRERCWRVRWPLNKE 215
>gi|308805352|ref|XP_003079988.1| toprim domain-containing protein (ISS) [Ostreococcus tauri]
gi|116058445|emb|CAL53634.1| toprim domain-containing protein (ISS) [Ostreococcus tauri]
Length = 699
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 179/310 (57%), Gaps = 38/310 (12%)
Query: 88 SCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAG--------RA 139
S PG++ ++CP C GG + ERSL+VHI DG A W C R +C W G RA
Sbjct: 115 SYTPGQH-RIICPTCNGGS-TGERSLAVHIEDDGKSAAWCCHRANCEWTGGTSKEGRQRA 172
Query: 140 FAGSNKIRKVMSSRQVAEKSL------------GLEPLGEKLIAYLGERMISEGTLQRNS 187
G++ S+R+VA+ L + P K +L R IS +RN
Sbjct: 173 SKGADG---AASNRRVAKPKLPDPADLQRIGPGNMTPAATKWSEFLKSRGISLEVAERNG 229
Query: 188 V-MQRLHD-------QAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETA 239
+ +Q ++ A+ FPY +G L+ KYR ++ F Q KG EK LYGLDD+
Sbjct: 230 LAVQNVYSPPASGYVDALCFPYMRDGELINIKYRGPDKSFWQVKGAEKILYGLDDVAGEE 289
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
EVIIVEGE+DKL++E AGF+N VSVP GAP KV + LP E D Y+YLWNC+ LD +
Sbjct: 290 EVIIVEGEMDKLALEMAGFRNVVSVPDGAPGKVKDGALPSPEDDRKYEYLWNCRAQLDTI 349
Query: 300 SRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALRE 359
SR ++ TD+D PG AL+EELARRLGK+RCWRV WP+ KDANE L+ G +RE
Sbjct: 350 SRFVIATDSDGPGRALSEELARRLGKERCWRVTWPEG-----CKDANEALQKEGVETVRE 404
Query: 360 VIENAELYQL 369
+ AE + L
Sbjct: 405 SLSTAEGFPL 414
>gi|303285780|ref|XP_003062180.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456591|gb|EEH53892.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 597
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/312 (42%), Positives = 172/312 (55%), Gaps = 37/312 (11%)
Query: 88 SCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGS--NK 145
S PG++ CP C GGG ERSL+V I DG A W C R C W G ++
Sbjct: 3 SYTPGQH-RTACPMC-GGGSGGERSLAVRIEDDGHSAAWMCHRATCEWTGGTSMDDTMSR 60
Query: 146 IRKVMSSRQ--------------VAEKSLGLEPLGEKLIA------YLGERMISEGTLQR 185
R+ S R + + P G A +L ER IS +R
Sbjct: 61 PRRDNSDRNKGFDGAGGAGGGGLTNAAAFRIGPGGNLTDAAAEWGEFLAERGISLDVAER 120
Query: 186 NSVM-QRLHD-------QAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINE 237
N + QR+ A+ FPY +G LV KYR ++ F Q KG EK ++GLDD+
Sbjct: 121 NGLAAQRVFSPAAGEVVDALVFPYMRDGELVNIKYRGPDKTFWQVKGAEKIMFGLDDVVG 180
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLD 297
E+IIVEGE+DKL++E+AG +N VSVP GAP KV +LP E+D ++YLWNC+ LD
Sbjct: 181 QREMIIVEGEMDKLALEQAGIKNVVSVPDGAPGKVREGDLPAPEEDRKFEYLWNCRAALD 240
Query: 298 KVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGAL 357
VSRI+L D D PG ALAEELARRLGK+RC+RV +P+ KDAN+ L+ G AL
Sbjct: 241 PVSRIVLAVDDDAPGIALAEELARRLGKERCYRVAFPEG-----CKDANDTLREHGEAAL 295
Query: 358 REVIENAELYQL 369
R I+NAE + L
Sbjct: 296 RGCIDNAEGFPL 307
>gi|412993299|emb|CCO16832.1| predicted protein [Bathycoccus prasinos]
Length = 934
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 171/324 (52%), Gaps = 49/324 (15%)
Query: 88 SCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRA-------- 139
S PG++ + CP+C GG ERSL+V I G A++ C R C W+G A
Sbjct: 317 SYTPGQHREM-CPQCNGGSGG-ERSLAVRIEPGGRQAVYVCHRATCEWSGAADLDFVPGK 374
Query: 140 FAGSNKI-------------------RKVMSSRQVAE----KSLGLEPLGEKLIAY---L 173
GS+ R ++ + + K +G L E + +
Sbjct: 375 AKGSSSAQGGKSSSSNTATNTNTNNQRTILKKPNLPKPEDLKRVGPGALDESAKPWAEMI 434
Query: 174 GERMISEGTLQRNSV--------MQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGT 225
ER IS +RN V ++ H A+ FPY +G +V KYR + F Q KG
Sbjct: 435 EERGISLEVAERNGVAVQSVFSPIEGKHVDALVFPYVRDGQIVNAKYRGPNKSFWQVKGA 494
Query: 226 EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
EK LYGLDD + E+IIVEGE DKL+ EEAG+ N VSVP GAP KV ++P E D
Sbjct: 495 EKVLYGLDDCIDCEEIIIVEGEFDKLAFEEAGYTNVVSVPDGAPGKVKEGDVPNPEDDKK 554
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDA 345
Y+YLWNC+ LD V R ++ TD+D PG ALAEELARRLGK+RC+ V WP+ KDA
Sbjct: 555 YEYLWNCRAQLDTVKRFVIATDSDGPGKALAEELARRLGKERCFTVNWPEG-----CKDA 609
Query: 346 NEVLKCLGPGALREVIENAELYQL 369
NE L+ G +R+ I +AE + L
Sbjct: 610 NETLQSGGVELIRDSISSAEGFPL 633
>gi|147865110|emb|CAN79816.1| hypothetical protein VITISV_006608 [Vitis vinifera]
Length = 461
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 131/250 (52%), Gaps = 49/250 (19%)
Query: 122 DFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEG 181
D+A+W C + CGW G +L+AY GERMISE
Sbjct: 126 DYAVWVCHQGKCGWRGNI----------------------------RLVAYFGERMISEK 157
Query: 182 TLQRNSVMQRLH-DQ-AIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETA 239
TL RNSVMQ+ + DQ IAF Y NGVLV CKYR + + F QEK TEK YG+DDI E +
Sbjct: 158 TLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDIKEAS 217
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
++IIVEGEIDKLS+EEA F NCVSVP APP VS + EK + W+ K + K
Sbjct: 218 DIIIVEGEIDKLSMEEAXFYNCVSVPDXAPPSVSTKVFESEEKMSKTTSFWSQK--IKKE 275
Query: 300 SRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALRE 359
R L G E+ ++ + K+ EVL LGP L++
Sbjct: 276 VRASLCPLQPDAGEEEKEKKKKKKKE-----------------KEKKEVLMYLGPDVLKK 318
Query: 360 VIENAELYQL 369
VIENAE+Y +
Sbjct: 319 VIENAEVYPI 328
>gi|365856514|ref|ZP_09396531.1| hypothetical protein HMPREF9946_02145 [Acetobacteraceae bacterium
AT-5844]
gi|363718050|gb|EHM01406.1| hypothetical protein HMPREF9946_02145 [Acetobacteraceae bacterium
AT-5844]
Length = 604
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 155/308 (50%), Gaps = 26/308 (8%)
Query: 82 GINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFA 141
GI S PG L+CPKC GGGRS E SLSV I DG+ +WRC R +CGW A
Sbjct: 16 GIPRLRSQAPGHSEKLICPKC-GGGRSREHSLSVTIDPDGEGVVWRCHRGNCGWQDGARL 74
Query: 142 GSNKIRKVMSSRQVAEKSLGLEPLGEK-------LIAYLGERMISEGTLQRNSVMQRLH- 193
+ + + + A +P E+ + + +R IS T+ H
Sbjct: 75 PARDGSRSAPAARAAASFQTPQPHPEEQQDKTAWVYEWFEKRGISAETVDAFGCYGAAHW 134
Query: 194 ------DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLD--DINETAE----V 241
AI FPY++ LV KYRS++++ Q+K L+ +D +++E A V
Sbjct: 135 FPAGGNQPAIVFPYFYERKLVNRKYRSLDKQLMQDKNPLPTLFNIDAIEVSEAAPEPDLV 194
Query: 242 IIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSR 301
I VEGE D +++ EAGF+ V++ GAP K+ + P R+ D + L + L V +
Sbjct: 195 IWVEGEPDVMALHEAGFRQVVTLKDGAPDKIRAEDDPARQDDKRFAALATHADLLGGVKK 254
Query: 302 IILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVI 361
IL D D PG L EELARRLG+ RCW V WP+ KDA + L+ G A+R+ I
Sbjct: 255 FILAGDMDEPGKILREELARRLGRHRCWLVTWPEG-----CKDAGDTLRLHGADAVRQAI 309
Query: 362 ENAELYQL 369
+ A Y +
Sbjct: 310 DEAVAYPI 317
>gi|77163600|ref|YP_342125.1| TOPRIM domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|254435901|ref|ZP_05049408.1| hypothetical protein NOC27_2964 [Nitrosococcus oceani AFC27]
gi|76881914|gb|ABA56595.1| toprim domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|207089012|gb|EDZ66284.1| hypothetical protein NOC27_2964 [Nitrosococcus oceani AFC27]
Length = 601
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 152/298 (51%), Gaps = 41/298 (13%)
Query: 97 LLCPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQV 155
L CP+C + + LSV++ + W C C W G R + R
Sbjct: 22 LTCPQCSAQRKKKRAKCLSVNV----EKGAWICHH--CSWRGGLSQREQSNRTLYWRRPD 75
Query: 156 AEKSLGLEP--LGEKLIAYLGERMISEGTLQRNSV------MQRLHD--QAIAFPYWHNG 205
+ P L E + + +R I+ L+RN + M +L AIAFPY+
Sbjct: 76 YRQPAPFSPGALPEDIQRWFAKRGITPAVLERNHIATKKVYMPQLERWVSAIAFPYYRGE 135
Query: 206 VLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVP 265
L+ KYR + FR E G E+ LYGL+D+ +T +IVEGE+DKL++E AGF+N VSVP
Sbjct: 136 TLINAKYRDGRKHFRLEAGAERILYGLNDLEQT--TLIVEGEMDKLALEVAGFRNVVSVP 193
Query: 266 SGAPPKVSNRELPPREKDTG--YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
GAP PP+ KD +++L +E L V ++ D D PG LAEEL+RR
Sbjct: 194 DGAP--------PPQAKDYARKFEFLQADEEALKTVKTWVIAVDNDAPGQYLAEELSRRF 245
Query: 324 GKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL-------HVSEE 374
G+++C RV WP+ KDANEVL GP L + I+NA+ Y L H+SE+
Sbjct: 246 GREKCKRVLWPEA-----CKDANEVLLKRGPEVLTDCIKNAQPYPLAGVLTVSHLSED 298
>gi|386393853|ref|ZP_10078634.1| hypothetical protein DesU5LDRAFT_3296 [Desulfovibrio sp. U5L]
gi|385734731|gb|EIG54929.1| hypothetical protein DesU5LDRAFT_3296 [Desulfovibrio sp. U5L]
Length = 568
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 135/281 (48%), Gaps = 34/281 (12%)
Query: 99 CPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIR-KVMSSRQVA 156
CP+C +S LSV++ +DG +W C+ CGW G AG+ K + + A
Sbjct: 23 CPQCSPSRKKSTAPCLSVNV-EDG---VWNCWH--CGWTGSLKAGAEKAEARPKKPIRPA 76
Query: 157 EKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQ--------RLHDQAIAFPYWHNGVLV 208
SL L L + Y R IS L N V I FPY G +V
Sbjct: 77 WDSLRLT-LPANVTEYFQGRGISAEALAANQVGYGPVWMPGPNAEVTCIQFPYLKGGEVV 135
Query: 209 GCKYRSMERKFRQEKGTEKWLYGLDDINETA----EVIIVEGEIDKLSVEEAGFQNCVSV 264
KYR + FRQ K EK LY D I + A +I+ EGE+D LS+ G+Q SV
Sbjct: 136 NVKYRDGHKNFRQAKDAEKCLYRFDAIEQRAGADRALIVTEGEMDALSLVTLGYQAVTSV 195
Query: 265 PSGAP-PKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
P GAP P N E + +L + + L K R+IL D D PG L ELARR+
Sbjct: 196 PDGAPSPGTKNYE-------KKFSFLESAEGLLAKYGRVILCVDNDAPGQILERELARRI 248
Query: 324 GKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
G ++CWRV +P+ KD NEVL LGP A R+VIE A
Sbjct: 249 GFEKCWRVAYPEGT-----KDINEVLAKLGPEAARQVIEEA 284
>gi|389696621|ref|ZP_10184263.1| replicative DNA helicase [Microvirga sp. WSM3557]
gi|388585427|gb|EIM25722.1| replicative DNA helicase [Microvirga sp. WSM3557]
Length = 488
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 111/206 (53%), Gaps = 15/206 (7%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYG 231
+L +R IS+ T R + D A+ FP+ G VG K+R +KF QE G ++ +
Sbjct: 9 WLEKRGISDETAVRFGICTV--DGALKFPFTEQGKEVGAKFRGANKKFWQESGGKRTFWN 66
Query: 232 LDDINETA------EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP-PREKDT 284
D +++ A +II EGEID L+ E GF VSVP GAPP V + P + T
Sbjct: 67 ADALDDPALEQGSMPLIITEGEIDALTAIECGFPLTVSVPDGAPPAVGEPTVNNPLDDQT 126
Query: 285 G-YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFK 343
G +Q+++N ++ L ++ R +L D D PG LA EL RRLG RC V +P+ K
Sbjct: 127 GKFQFMFNNRDRLKRIKRFVLAVDNDPPGIRLASELVRRLGASRCSFVTYPEG-----CK 181
Query: 344 DANEVLKCLGPGALREVIENAELYQL 369
D NEVL GP + EV+ A+ Y +
Sbjct: 182 DLNEVLTQCGPEGVTEVLNGAKPYPV 207
>gi|354603971|ref|ZP_09021964.1| hypothetical protein HMPREF9450_00879 [Alistipes indistinctus YIT
12060]
gi|353348403|gb|EHB92675.1| hypothetical protein HMPREF9450_00879 [Alistipes indistinctus YIT
12060]
Length = 589
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 129/282 (45%), Gaps = 43/282 (15%)
Query: 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQV 155
++ CP C + ++ + + D + C D ++ R ++SRQ
Sbjct: 24 YMTCPVC---SETRKKKRDKCFVWNADKGVGHCCHCDATFSSRT---------QLTSRQS 71
Query: 156 AEKSLGL----EPLGEKLIAYLGERMISEGTLQRNSVM-------QRLHD-QAIAFPYWH 203
+ ++ + L + + + RMIS+ TL+ + Q D + I FPY+
Sbjct: 72 KDYAVPVWKNKTGLTDGAVKWFEGRMISQATLREMRIYSDKEWMPQYGRDTKVICFPYFV 131
Query: 204 NGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVS 263
LV KYR ++ FR KG E Y D I + E+I+ EGE+D LS EAG++N VS
Sbjct: 132 GDRLVNIKYRGPQKSFRMVKGAELIFYNFDCIAASKELIVCEGEMDALSFIEAGYKNVVS 191
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
VP+GA T Y N ++L + R + D D G L EL RRL
Sbjct: 192 VPNGAGA-------------TDLTYFDNYVDNLGHIERFYIAADFDEAGLKLRNELVRRL 238
Query: 324 GKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G ++C V + + KDANE+L G A+REVIE A+
Sbjct: 239 GSEKCLIVTYKGR------KDANELLIAEGGLAVREVIEGAQ 274
>gi|116253685|ref|YP_769523.1| phage DNA primase/helicase [Rhizobium leguminosarum bv. viciae
3841]
gi|115258333|emb|CAK09435.1| putative phage DNA primase/helicase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 553
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 20/187 (10%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETA------EVIIVEGEIDK 250
+ FP+ G VG KYR+ +KF Q KG K + D +++ A +II EGEID
Sbjct: 71 VVFPFIDGGRPVGEKYRAPGKKFWQRKGGRKTFWNADCMDDPALEEGHKALIITEGEIDG 130
Query: 251 LSVEEAGFQNCVSVPSGAPPKVSNRELP-------PREKDTG-YQYLWNCKEHLDKVSRI 302
L+ + GF VSVP GAPP V + E P P + G +++++N + + ++ R
Sbjct: 131 LTAIDCGFHTTVSVPDGAPP-VRDGEDPDQLDDAIPDDDSRGKFEFVYNNRHRIKRIKRF 189
Query: 303 ILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
IL D D PG LA EL RRLG RC + +P+ KD N+V GP A+ VI
Sbjct: 190 ILAVDNDPPGRRLAAELVRRLGAARCSFLTYPEG-----CKDLNDVKMRHGPDAVVRVIT 244
Query: 363 NAELYQL 369
A+ Y +
Sbjct: 245 EAKPYPV 251
>gi|85716575|ref|ZP_01047545.1| toprim domain-containing protein [Nitrobacter sp. Nb-311A]
gi|85696576|gb|EAQ34464.1| toprim domain-containing protein [Nitrobacter sp. Nb-311A]
Length = 515
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 94/195 (48%), Gaps = 24/195 (12%)
Query: 197 IAFPYWHNGVLVGCKYRSMERK-----FRQEKGTEKWLYGLDDINE------TAEVIIVE 245
+ FPY N V KYR R Q + Y D +++ +A ++I E
Sbjct: 49 LVFPYLENEAEVAAKYRGRPRADGSKVLWQRANGRRTFYNADVLDDPKLSDGSAALVITE 108
Query: 246 GEIDKLSVEEAGFQNCVSVPSGAPPK--VSNRELPP---------REKDTGYQYLWNCKE 294
GE D L+V AG+ VSVP GAPP +LPP D Y++L N E
Sbjct: 109 GEPDCLAVLSAGYPFAVSVPDGAPPDKDAHGNKLPPVPETADDVDPNNDDKYRFLVNNWE 168
Query: 295 HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGP 354
L K+ R IL TD D PGH L +ELARRLG+ RC V +P D DANEVL G
Sbjct: 169 RLKKIKRFILMTDDDGPGHRLRDELARRLGRVRCSFVTYP--DCGGKKPDANEVLIRHGA 226
Query: 355 GALREVIENAELYQL 369
+ ++I NA Y +
Sbjct: 227 STVVDMIANATPYPV 241
>gi|92118809|ref|YP_578538.1| TOPRIM domain-containing protein [Nitrobacter hamburgensis X14]
gi|91801703|gb|ABE64078.1| toprim domain-containing protein [Nitrobacter hamburgensis X14]
Length = 515
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 94/195 (48%), Gaps = 24/195 (12%)
Query: 197 IAFPYWHNGVLVGCKYRSMERK-----FRQEKGTEKWLYGLDDINE------TAEVIIVE 245
+ FPY N + KYR R Q + Y D +++ +A ++I E
Sbjct: 49 LVFPYLENETEIAAKYRGKPRPDGSKVIWQRANGRRTFYNADVLDDPKLSDGSAALVITE 108
Query: 246 GEIDKLSVEEAGFQNCVSVPSGAPPK--VSNRELPP---------REKDTGYQYLWNCKE 294
GE D L+V AG+ VSVP GAPP +LPP D Y++L N E
Sbjct: 109 GEPDCLAVLSAGYPFAVSVPDGAPPDKDAHGNKLPPVPETADDVDPNNDDKYRFLVNNWE 168
Query: 295 HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGP 354
L K+ R IL TD D PGH L +ELARRLG+ RC V +P D DANEVL G
Sbjct: 169 RLKKIKRFILMTDDDGPGHRLRDELARRLGRVRCSFVSYP--DCGDRKPDANEVLIRHGA 226
Query: 355 GALREVIENAELYQL 369
+ ++I NA Y +
Sbjct: 227 STVVDMIANATPYPV 241
>gi|189460531|ref|ZP_03009316.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
gi|189432775|gb|EDV01760.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
Length = 607
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 127/284 (44%), Gaps = 35/284 (12%)
Query: 97 LLCPKCKGGGRS-LERSLSVHIIQDGDFAMWRCFRVDCG-----WA--GRAFAGSNKIRK 148
+ CP+C ++SLS+++ + G+F C C W R + + IR+
Sbjct: 22 VFCPQCHDQRHDKRDKSLSINL-ETGEFNCHYCGFSGCAAEKEPWEKEDRPWRNAAPIRR 80
Query: 149 VMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFP 200
+ + K + + R ISE TL V + L + F
Sbjct: 81 EKPVYKKPAPRQDCSSISGKALEWFKGRGISEKTLTAMKVTEGLEWMPQKNGKANTVQFN 140
Query: 201 YWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
Y+HNG LV K+R+ ++ F+ G E YG+D+I T E II EGE+D LS E G +
Sbjct: 141 YYHNGELVNTKFRTGDKCFKLCSGAELLPYGIDNIKGTKECIITEGEMDALSFFECGRTD 200
Query: 261 CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELA 320
VSVP+GA + D YL +E+ D I + +D DT G L EEL
Sbjct: 201 VVSVPNGANSNL----------DYLDDYL---EEYFDDKETIYIASDTDTKGVVLKEELI 247
Query: 321 RRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
RR G +RC + + KDANE L+ G +L + I +A
Sbjct: 248 RRFGAERCRIIEYGDG-----CKDANEHLQKYGRESLLKCIADA 286
>gi|386811700|ref|ZP_10098925.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403970|dbj|GAB61806.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 592
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 99 CPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVD-CGWAG------RAFAGSNKIRKVMS 151
CP CKGG ++ + ++++ + + C R++ C G F +V S
Sbjct: 26 CPFCKGGPKNEKYKFALNVTK----RTFNCKRLNNCDKKGTFRQLCEKFGEEADRNEVNS 81
Query: 152 SRQVAEKS------LGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNG 205
R + L P G+ + Y +R IS+ TL+R V + + AIAF Y G
Sbjct: 82 QRNYKKPKAYIMPKTALTPFGQTIGEYFKKRGISQQTLERREVSE--CNGAIAFLYREEG 139
Query: 206 VLVGCKYRSMER--KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVS 263
LV KYR+ ++ K +E+G + +G+D + ++IVEGE D L+++E +N +S
Sbjct: 140 KLVLVKYRTPQKEPKHWREEGGKPVFWGMDLCDPQYPLVIVEGEPDALALDECNIKNAIS 199
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
VPSGA +L E NC E L++ +I + D D G + ++L RL
Sbjct: 200 VPSGA------EDLSCIE---------NCWEWLNQFKKIKIWGDNDEAGKKMVDKLILRL 244
Query: 324 GKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
G+ RC+ V P +KDANE L G ++R+ +E A
Sbjct: 245 GQFRCFIVNSP-------YKDANEHLMKEGTESVRKAVETA 278
>gi|345513107|ref|ZP_08792630.1| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
gi|345456297|gb|EEO44890.2| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
Length = 653
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 166 GEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMER 217
GE + +G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 149 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLSQTGKEEACICFPYLEDGVMKNMKFRDAAK 208
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 209 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA--------- 259
Query: 278 PPREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
G W + H D + IIL D D G L +EL RRLG DRC V W
Sbjct: 260 ------GGANLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG 313
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANE L LR+ +E A
Sbjct: 314 EG-----CKDANEYLLKYDLSRLRQQVEQA 338
>gi|293372731|ref|ZP_06619112.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|336414701|ref|ZP_08595047.1| hypothetical protein HMPREF1017_02155 [Bacteroides ovatus
3_8_47FAA]
gi|423298095|ref|ZP_17276154.1| hypothetical protein HMPREF1070_04819 [Bacteroides ovatus
CL03T12C18]
gi|292632240|gb|EFF50837.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|335933813|gb|EGM95815.1| hypothetical protein HMPREF1017_02155 [Bacteroides ovatus
3_8_47FAA]
gi|392664037|gb|EIY57580.1| hypothetical protein HMPREF1070_04819 [Bacteroides ovatus
CL03T12C18]
Length = 599
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEA 256
+ F ++ NG LV K+R ++ F+ +G Y +D I +T E I+VEGE D LS
Sbjct: 146 LCFNFFENGELVNTKFRDSQKHFKLLQGARTIPYNIDAIRDTPECILVEGEFDALSYMAV 205
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKE-HLDKVSRIILGTDADTPGHAL 315
G + +SVP+GA N +L +L E H ++ I L D D G L
Sbjct: 206 GRTDVISVPNGA-----NSQL---------DWLDELSESHFEQKQVIYLSVDTDRKGREL 251
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
EL+RRLG DRC V + + +KDANE+L GP AL + +E+A + +L
Sbjct: 252 CRELSRRLGVDRCRIVTYGEA-----YKDANELLVAEGPDALLKALEDAPIPRL 300
>gi|336406254|ref|ZP_08586914.1| hypothetical protein HMPREF0127_04227 [Bacteroides sp. 1_1_30]
gi|335935282|gb|EGM97240.1| hypothetical protein HMPREF0127_04227 [Bacteroides sp. 1_1_30]
Length = 599
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEA 256
+ F ++ NG LV K+R ++ F+ +G Y +D I +T E I+VEGE D LS
Sbjct: 146 LCFNFFENGELVNTKFRDSQKHFKLLQGARTIPYNIDAIRDTPECILVEGEFDALSYMAV 205
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKE-HLDKVSRIILGTDADTPGHAL 315
G + +SVP+GA N +L +L E H ++ I L D D G L
Sbjct: 206 GRTDVISVPNGA-----NSQL---------DWLDELSESHFEQKQVIYLSVDTDRKGREL 251
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
EL+RRLG DRC V + + +KDANE+L GP AL + +E+A + +L
Sbjct: 252 CRELSRRLGVDRCRIVTYGEA-----YKDANELLVAEGPDALLKALEDAPIPRL 300
>gi|262409381|ref|ZP_06085924.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644921|ref|ZP_06722657.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294808819|ref|ZP_06767549.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|345509457|ref|ZP_08789055.1| DNA primase/helicase [Bacteroides sp. D1]
gi|229446161|gb|EEO51952.1| DNA primase/helicase [Bacteroides sp. D1]
gi|262352833|gb|EEZ01930.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639734|gb|EFF58016.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294443991|gb|EFG12728.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 599
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 20/174 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEA 256
+ F ++ NG LV K+R ++ F+ +G Y +D I +T E I+VEGE D LS
Sbjct: 146 LCFNFFENGELVNTKFRDSQKHFKLLQGARTIPYNIDAIRDTPECILVEGEFDALSYMAV 205
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKE-HLDKVSRIILGTDADTPGHAL 315
G + +SVP+GA N +L +L E H ++ I L D D G L
Sbjct: 206 GRTDVISVPNGA-----NSQL---------DWLDELSESHFEQKQVIYLSVDTDRKGREL 251
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
EL+RRLG DRC V + + +KDANE+L GP AL + +E+A + +L
Sbjct: 252 CRELSRRLGVDRCRIVTYGEA-----YKDANELLVAEGPDALLKALEDAPIPRL 300
>gi|265751835|ref|ZP_06087628.1| DNA primase/helicase [Bacteroides sp. 3_1_33FAA]
gi|263236627|gb|EEZ22097.1| DNA primase/helicase [Bacteroides sp. 3_1_33FAA]
Length = 507
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 166 GEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMER 217
GE + +G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 3 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA--------- 113
Query: 278 PPREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
G W + H D + IIL D D G L +EL RRLG DRC V W
Sbjct: 114 ------GGANLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG 167
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANE L LR+ +E A
Sbjct: 168 EG-----CKDANEYLLKYDLPRLRQQVEQA 192
>gi|423240299|ref|ZP_17221414.1| hypothetical protein HMPREF1065_02037 [Bacteroides dorei
CL03T12C01]
gi|392644400|gb|EIY38139.1| hypothetical protein HMPREF1065_02037 [Bacteroides dorei
CL03T12C01]
Length = 652
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 166 GEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMER 217
GE + +G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 148 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 207
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 208 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA--------- 258
Query: 278 PPREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
G W + H D + IIL D D G L +EL RRLG DRC V W
Sbjct: 259 ------GGANLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG 312
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANE L LR+ +E A
Sbjct: 313 EG-----CKDANEYLLKYDLPRLRQQVEQA 337
>gi|423229487|ref|ZP_17215892.1| hypothetical protein HMPREF1063_01712 [Bacteroides dorei
CL02T00C15]
gi|423245329|ref|ZP_17226403.1| hypothetical protein HMPREF1064_02609 [Bacteroides dorei
CL02T12C06]
gi|392633700|gb|EIY27640.1| hypothetical protein HMPREF1063_01712 [Bacteroides dorei
CL02T00C15]
gi|392639436|gb|EIY33256.1| hypothetical protein HMPREF1064_02609 [Bacteroides dorei
CL02T12C06]
Length = 507
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 166 GEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMER 217
GE + +G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 3 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA--------- 113
Query: 278 PPREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
G W + H D + IIL D D G L +EL RRLG DRC V W
Sbjct: 114 ------GGANLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGMDRCKVVAWG 167
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANE L LR+ +E A
Sbjct: 168 EG-----CKDANEYLLKYDLPRLRQQVEQA 192
>gi|224056775|ref|XP_002299017.1| predicted protein [Populus trichocarpa]
gi|222846275|gb|EEE83822.1| predicted protein [Populus trichocarpa]
Length = 68
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 58/84 (69%), Gaps = 16/84 (19%)
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
VEGEIDKLSVEEAGF+NCVSVP GAP VS ++LP + K+SRI+
Sbjct: 1 VEGEIDKLSVEEAGFRNCVSVPGGAPQIVSAKDLP----------------SIQKLSRIV 44
Query: 304 LGTDADTPGHALAEELARRLGKDR 327
L TD DT G +LAEELARRLGK+R
Sbjct: 45 LATDGDTSGRSLAEELARRLGKER 68
>gi|212691424|ref|ZP_03299552.1| hypothetical protein BACDOR_00916 [Bacteroides dorei DSM 17855]
gi|212666034|gb|EEB26606.1| hypothetical protein BACDOR_00916 [Bacteroides dorei DSM 17855]
Length = 705
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 166 GEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMER 217
GE + +G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 201 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 260
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 261 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA--------- 311
Query: 278 PPREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
G W + H D + IIL D D G L +EL RRLG DRC V W
Sbjct: 312 ------GGANLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGVDRCKVVAWG 365
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANE L LR+ +E A
Sbjct: 366 EG-----CKDANEYLLKYDLPRLRQQVEQA 390
>gi|294776206|ref|ZP_06741691.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294449889|gb|EFG18404.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 507
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 94/209 (44%), Gaps = 32/209 (15%)
Query: 168 KLIAYL-GERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMERK 218
K++ Y+ G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 4 KMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAKH 63
Query: 219 FRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 64 FKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA---------- 113
Query: 279 PREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPK 335
G W + H D + IIL D D G L +EL RRLG DRC V W +
Sbjct: 114 -----GGANLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWGE 168
Query: 336 KDEFSYFKDANEVLKCLGPGALREVIENA 364
KDANE L LR+ +E A
Sbjct: 169 G-----CKDANEYLLKYDLPRLRQQVEQA 192
>gi|150006399|ref|YP_001301143.1| DNA primase/helicase [Bacteroides vulgatus ATCC 8482]
gi|149934823|gb|ABR41521.1| DNA primase/helicase [Bacteroides vulgatus ATCC 8482]
Length = 507
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 94/209 (44%), Gaps = 32/209 (15%)
Query: 168 KLIAYL-GERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMERK 218
K++ Y+ G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 4 KMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAKH 63
Query: 219 FRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 64 FKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA---------- 113
Query: 279 PREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPK 335
G W + H D + IIL D D G L +EL RRLG DRC V W +
Sbjct: 114 -----GGANLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGVDRCKVVAWGE 168
Query: 336 KDEFSYFKDANEVLKCLGPGALREVIENA 364
KDANE L LR+ +E A
Sbjct: 169 G-----CKDANEYLLKYDLPRLRQQVEQA 192
>gi|423314135|ref|ZP_17292070.1| hypothetical protein HMPREF1058_02682 [Bacteroides vulgatus
CL09T03C04]
gi|392683733|gb|EIY77067.1| hypothetical protein HMPREF1058_02682 [Bacteroides vulgatus
CL09T03C04]
Length = 692
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 94/209 (44%), Gaps = 32/209 (15%)
Query: 168 KLIAYL-GERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMERK 218
K++ Y+ G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 189 KMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAKH 248
Query: 219 FRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 249 FKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA---------- 298
Query: 279 PREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPK 335
G W + H D + IIL D D G L +EL RRLG DRC V W +
Sbjct: 299 -----GGANLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGVDRCKVVAWGE 353
Query: 336 KDEFSYFKDANEVLKCLGPGALREVIENA 364
KDANE L LR+ +E A
Sbjct: 354 G-----CKDANEYLLKYDLPRLRQQVEQA 377
>gi|423278354|ref|ZP_17257268.1| hypothetical protein HMPREF1203_01485 [Bacteroides fragilis HMW
610]
gi|404586364|gb|EKA90937.1| hypothetical protein HMPREF1203_01485 [Bacteroides fragilis HMW
610]
Length = 622
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 128/302 (42%), Gaps = 60/302 (19%)
Query: 99 CPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKI----------- 146
CP+C G ++SLSV D D +++C CGW+G A GS K
Sbjct: 27 CPRCIGQRSNKSDKSLSV----DLDSGLYKCHY--CGWSGVADDGSGKHGGRKTGDPLVD 80
Query: 147 ----RKVMSSRQVA----------EKSLGLEPLGEKLIAYLG-ERMISEGTLQRNSVMQR 191
R S R A +K PL + +L ER IS ++ +
Sbjct: 81 FPAERNRTSPRPTAPDGTAAPQHPQKPANETPLTPVQLKWLADERHISAHAAEQLHITSS 140
Query: 192 --------LHDQAIAFPYWHNGVLVGCKYR-SMERKFRQEKGTEKWLYGLDDINETAEVI 242
L + + F Y G LV K+R ++ + F+ G E Y +D I T E I
Sbjct: 141 VQYMPQSGLEEPCLCFNYLEEGRLVNIKFRATLHKHFKMLTGAELIPYNIDGIKGTPECI 200
Query: 243 IVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRI 302
I EGE+D + AG + +SVP GA NR L ++ H + I
Sbjct: 201 ITEGELDAAAFVTAGRTDVISVPGGA-----NRNLKWMDR--------FVDSHFEDKRVI 247
Query: 303 ILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
+ DAD G L +EL RRLG++RC V + + KDANE+L GP AL + +
Sbjct: 248 YIAGDADPKGEELKQELLRRLGRERCRVVSYGEG-----CKDANELLVKAGPEALSQALA 302
Query: 363 NA 364
+A
Sbjct: 303 DA 304
>gi|424664314|ref|ZP_18101350.1| hypothetical protein HMPREF1205_00189 [Bacteroides fragilis HMW
616]
gi|404575896|gb|EKA80637.1| hypothetical protein HMPREF1205_00189 [Bacteroides fragilis HMW
616]
Length = 622
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 128/302 (42%), Gaps = 60/302 (19%)
Query: 99 CPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKI----------- 146
CP+C G ++SLSV D D +++C CGW+G A GS K
Sbjct: 27 CPRCIGQRSNKSDKSLSV----DLDSGLYKCHY--CGWSGVADDGSGKHGGRKTGDTLVD 80
Query: 147 ----RKVMSSRQVA----------EKSLGLEPLGEKLIAYLG-ERMISEGTLQRNSVMQR 191
R S R A +K PL + +L ER IS ++ +
Sbjct: 81 FPAERNRTSPRPTAPDGTAVPQRPQKPANETPLTPVQLKWLADERHISAHAAEQLHITSS 140
Query: 192 --------LHDQAIAFPYWHNGVLVGCKYR-SMERKFRQEKGTEKWLYGLDDINETAEVI 242
L + + F Y G LV K+R ++ + F+ G E Y +D I T E I
Sbjct: 141 VQYMPQSGLEEPCLCFNYLEEGRLVNIKFRATLHKHFKMLTGAELIPYNIDGIKGTPECI 200
Query: 243 IVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRI 302
I EGE+D + AG + +SVP GA NR L ++ H + I
Sbjct: 201 ITEGELDAAAFVTAGRTDVISVPGGA-----NRNLKWMDR--------FVDSHFEDKRVI 247
Query: 303 ILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
+ DAD G L +EL RRLG++RC V + + KDANE+L GP AL + +
Sbjct: 248 YIAGDADPKGEELKQELLRRLGRERCRVVSYGEG-----CKDANELLVKAGPEALSQALA 302
Query: 363 NA 364
+A
Sbjct: 303 DA 304
>gi|317479937|ref|ZP_07939052.1| DNA primase/helicase [Bacteroides sp. 4_1_36]
gi|423307090|ref|ZP_17285089.1| hypothetical protein HMPREF1072_04029 [Bacteroides uniformis
CL03T00C23]
gi|423308327|ref|ZP_17286317.1| hypothetical protein HMPREF1073_01067 [Bacteroides uniformis
CL03T12C37]
gi|316903882|gb|EFV25721.1| DNA primase/helicase [Bacteroides sp. 4_1_36]
gi|392676983|gb|EIY70403.1| hypothetical protein HMPREF1072_04029 [Bacteroides uniformis
CL03T00C23]
gi|392687563|gb|EIY80855.1| hypothetical protein HMPREF1073_01067 [Bacteroides uniformis
CL03T12C37]
Length = 604
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ I F Y+ NG LV KYRS + F KG E Y +D I T E II EGE D +V
Sbjct: 134 ENCICFNYFENGTLVNTKYRSALKHFMMVKGAELIPYNVDSILGTPECIITEGEFDAAAV 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW---NCKEHLDKVSRIILGTDADT 310
AG ++ VSVP+GA ++ W + H + I + D D
Sbjct: 194 IAAGRKDVVSVPAGAQSNLT----------------WLDRFVESHFEDKQAIYIAVDEDP 237
Query: 311 PGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G +L +EL RRLG +RC V + + KDANE L G +LR IE AE
Sbjct: 238 AGQSLRQELTRRLGVERCRIVHFGEG-----CKDANEHLVKYGAESLRICIEQAE 287
>gi|319643662|ref|ZP_07998279.1| DNA primase/helicase [Bacteroides sp. 3_1_40A]
gi|345521427|ref|ZP_08800753.1| DNA primase/helicase [Bacteroides sp. 4_3_47FAA]
gi|317384692|gb|EFV65654.1| DNA primase/helicase [Bacteroides sp. 3_1_40A]
gi|345456550|gb|EET14796.2| DNA primase/helicase [Bacteroides sp. 4_3_47FAA]
Length = 666
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 166 GEKLIAYLGERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMER 217
GE + + R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 162 GEMMEYMVDRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 221
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 222 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA--------- 272
Query: 278 PPREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
G W + H D + IIL D D G L +EL RRLG DRC V W
Sbjct: 273 ------GGANLQWLDRFVESHFDDKAEIILAMDTDKRGVELRDELVRRLGVDRCKVVAWG 326
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANE L LR+ +E A
Sbjct: 327 EG-----CKDANEYLLKYDLPRLRQQVEQA 351
>gi|270296576|ref|ZP_06202775.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272563|gb|EFA18426.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 604
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ I F Y+ NG LV KYRS + F KG E Y +D I T E II EGE D ++
Sbjct: 134 ENCICFNYFENGTLVNTKYRSALKHFMMVKGAELIPYNVDSILGTPECIITEGEFDAAAI 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW---NCKEHLDKVSRIILGTDADT 310
AG ++ VSVP+GA ++ W + H + I + D D
Sbjct: 194 IAAGRKDVVSVPAGAQSNLT----------------WLDRFVESHFEDKQAIYIAVDEDP 237
Query: 311 PGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G +L +EL RRLG +RC V + + KDANE L G +LR IE AE
Sbjct: 238 AGQSLRQELTRRLGVERCRIVHFGEG-----CKDANEHLVKYGAESLRICIEQAE 287
>gi|160889423|ref|ZP_02070426.1| hypothetical protein BACUNI_01847 [Bacteroides uniformis ATCC 8492]
gi|156860940|gb|EDO54371.1| hypothetical protein BACUNI_01847 [Bacteroides uniformis ATCC 8492]
Length = 604
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ I F Y+ NG LV KYRS + F KG E Y +D I T E II EGE D +V
Sbjct: 134 ENCICFNYFENGTLVNTKYRSALKHFMMVKGAELIPYNVDSILGTPECIITEGEFDAAAV 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW---NCKEHLDKVSRIILGTDADT 310
AG ++ VSVP+GA ++ W + H + I + D D
Sbjct: 194 IAAGRKDVVSVPAGAQSNLT----------------WLDRFVESHFEDKQTIYIAVDEDP 237
Query: 311 PGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G +L +EL RR+G +RC V + + KDANE L G +LR IE AE
Sbjct: 238 AGQSLRQELTRRIGVERCRIVHFGEG-----CKDANEHLVKYGAESLRICIEQAE 287
>gi|237712140|ref|ZP_04542621.1| DNA primase/helicase [Bacteroides sp. 9_1_42FAA]
gi|229453461|gb|EEO59182.1| DNA primase/helicase [Bacteroides sp. 9_1_42FAA]
Length = 710
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 93/209 (44%), Gaps = 32/209 (15%)
Query: 168 KLIAYL-GERMISEGTLQRNSVMQRLH--------DQAIAFPYWHNGVLVGCKYRSMERK 218
K++ Y+ G R I L R + +RL + I FPY +GV+ K+R +
Sbjct: 207 KMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAKH 266
Query: 219 FRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
F+ KG E + +D I + I EGEID LS+ AG + VSVP+GA
Sbjct: 267 FKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGA---------- 316
Query: 279 PREKDTGYQYLW---NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPK 335
G W + H D + IIL D D G L +EL RLG DRC V W +
Sbjct: 317 -----GGANLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVCRLGVDRCKVVAWGE 371
Query: 336 KDEFSYFKDANEVLKCLGPGALREVIENA 364
KDANE L LR+ +E A
Sbjct: 372 G-----CKDANEYLLKYDLPRLRQQVEQA 395
>gi|427382316|ref|ZP_18879036.1| hypothetical protein HMPREF9447_00069 [Bacteroides oleiciplenus YIT
12058]
gi|425729561|gb|EKU92412.1| hypothetical protein HMPREF9447_00069 [Bacteroides oleiciplenus YIT
12058]
Length = 604
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 124/292 (42%), Gaps = 50/292 (17%)
Query: 98 LCPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVA 156
+CPKC G ++SL+V++ + C+ CG+ + + + + RQ
Sbjct: 22 ICPKCNDTRGHKGDKSLAVNLSEG------VCYCHHCGY--KLYVPDDAEERQRKQRQEQ 73
Query: 157 EKSLGLEP--------------LGEKLIAY-LGERMISEGTLQRNSVMQRLH-------- 193
+ + P L EKL Y ER +++ L + +
Sbjct: 74 LRKVSQLPSHFRRPTFDPAKAKLSEKLEKYWTQERCLAQNLLAELRITEECTKLPGNNEI 133
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ + F Y+ NG+L+ KYRS + F+ G E Y +D I +T E II EGE D +
Sbjct: 134 ENCLCFNYFENGILINTKYRSALKHFKMVTGAELIPYNIDAIADTPECIITEGEFDACAF 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AG ++ +SVP+GA SN R +T H ++ I + D D G
Sbjct: 194 MSAGRKDVISVPAGAQ---SNLTWMDRFVET----------HFEQKKVIYIAADEDGAGQ 240
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
AL EL RRLG +RC V + KDANE L G +L + AE
Sbjct: 241 ALRHELVRRLGAERCRLVHFGPG-----CKDANEHLIRYGAESLLITLAQAE 287
>gi|225574757|ref|ZP_03783367.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
10507]
gi|225038028|gb|EEG48274.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
10507]
Length = 606
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 46/288 (15%)
Query: 99 CPKCKGGGRSLER-SLSVHIIQDGDFAMWRCFRVDCGWAGRA--------FAGSNKIRKV 149
CP C GG ++ + S+++ D ++C R C G F+ ++ +
Sbjct: 34 CPYCLGGSNGKDKGTFSINL----DTGQFKCLRASCDAHGNMITLARDFNFSLGTEVDEY 89
Query: 150 MSSRQVAEKSLGLEPLGEK--LIAYLGERMISEGTLQR-NSVMQRLHDQAIAFPYW-HNG 205
S ++ E K + YL R ISE T +R N Q+ ++ + FP++ N
Sbjct: 90 YSPKKRFRNIHRKEKPQTKPAAVKYLESRGISEETAKRYNITTQKDNENILVFPFYDENN 149
Query: 206 VLVGCKYRSMERKFRQEKGTEKW--------LYGLDDIN-ETAEVIIVEGEIDKLSVEEA 256
+L KYR + ++K E W L+G++ + E +++ EG+ID LS EA
Sbjct: 150 ILQFVKYRKTDFDKDRDKNKE-WCERNCKPILFGMNHCDPEQPTLVLTEGQIDSLSCAEA 208
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
G +N VSVP+GA G+ ++ C + L + + +++ D + +L
Sbjct: 209 GIKNAVSVPNGA---------------KGFTWIPYCWDFLSRFANLVIFGDFEHEAISLL 253
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
E+ +R V+ ++D++ KDANE+L+ GP L++ +ENA
Sbjct: 254 PEMQKRFHG----TVKHIREDDYKDCKDANEILQKYGPEYLQKCVENA 297
>gi|160885998|ref|ZP_02067001.1| hypothetical protein BACOVA_04004 [Bacteroides ovatus ATCC 8483]
gi|156108811|gb|EDO10556.1| hypothetical protein BACOVA_04004 [Bacteroides ovatus ATCC 8483]
Length = 612
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ G L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 150 ERCICFNYFEGGQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEGELDAASS 209
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGFQ+ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 210 IAAGFQSVISVPAGAN---SNLSWLDRFMET----------HFEDLKEIIIAVDADSAGI 256
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 257 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 302
>gi|189465512|ref|ZP_03014297.1| hypothetical protein BACINT_01870 [Bacteroides intestinalis DSM
17393]
gi|189437786|gb|EDV06771.1| hypothetical protein BACINT_01870 [Bacteroides intestinalis DSM
17393]
Length = 604
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ + F Y+ NGVL+ KYRS + FR G E Y +D I +T E II EGE D +
Sbjct: 134 ENYLCFNYFENGVLINTKYRSALKHFRMVTGAELIPYNIDAIADTPECIITEGEFDACAF 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AG ++ +SVP+GA SN R ++ H + I + D D G
Sbjct: 194 MTAGRKDVISVPAGAQ---SNLTWMDRFVES----------HFEPKKVIYIAADEDGAGQ 240
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
AL EL RRLG +RC V + KDANE L G +L + AE
Sbjct: 241 ALRHELVRRLGAERCRLVHFGPG-----CKDANEHLILYGAQSLLITLAQAE 287
>gi|421834245|ref|ZP_16269323.1| TOPRIM domain protein [Clostridium botulinum CFSAN001627]
gi|409744322|gb|EKN42936.1| TOPRIM domain protein [Clostridium botulinum CFSAN001627]
Length = 618
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 56/297 (18%)
Query: 99 CPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKI------------ 146
CP C GG + + S++I D + C R CG +G + K
Sbjct: 30 CPFCNGGAHHDQYTFSINI----DKHTYNCLRGKCGESGTFKELAEKYGEQAQYYLDWLK 85
Query: 147 ---RKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSV----MQRLHDQAIAF 199
++ + Q ++ + L +K++ Y +R IS+ TL++ V ++++++ F
Sbjct: 86 ENNKEYKQTAQYSQPKYKINSLSDKVVQYFNKRGISKKTLEKVGVKSFYFKKINEEFAVF 145
Query: 200 PYWHNGVLVGCKYRSM-----------ERKFRQEKGTEKWLYGLDDINETAEVIIVEGEI 248
++ N LV K R + E K +E G + L+ + +I++ VI+ EG +
Sbjct: 146 QFFENEKLVMNKMRLLRKPQIKKDGKKELKEWKESGGKHVLWNMQNIDKNKPVILCEGMV 205
Query: 249 DKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDA 308
D LSV E +N S+PSG R+L ++ NC + + ++ I+ D
Sbjct: 206 DGLSVIECEVENVTSIPSGT------RDLT---------WIDNCYDWIQEIKEWIIYVDN 250
Query: 309 DTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
D G L L + G +C V+ KDAN+ L LG + + I+NA+
Sbjct: 251 DVAGDELKNNLLMKFGYSKCRVVKHE-------LKDANDELNVLGKEYIIDAIKNAK 300
>gi|224539181|ref|ZP_03679720.1| hypothetical protein BACCELL_04083 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519196|gb|EEF88301.1| hypothetical protein BACCELL_04083 [Bacteroides cellulosilyticus
DSM 14838]
Length = 604
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ + F Y+ NG L+ KYRS + F KG E Y +D I +T E II EGE D +
Sbjct: 134 ENCLCFNYFENGTLINTKYRSGRKHFMMVKGAELIPYNIDAILDTPECIITEGEFDAAAF 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AG ++ +SVP+GA +N R DT H + I + TD D G
Sbjct: 194 MSAGRKDVISVPAGAQ---NNLTWMDRFVDT----------HFEPKQLIYIATDEDNSGR 240
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
L EL RRLG +RC V + + KDANE L G +L + AE
Sbjct: 241 LLQRELVRRLGTERCRLVHFGPE-----CKDANEHLIRYGAESLLITLAQAE 287
>gi|427387567|ref|ZP_18883552.1| hypothetical protein HMPREF9447_04585 [Bacteroides oleiciplenus YIT
12058]
gi|425724966|gb|EKU87839.1| hypothetical protein HMPREF9447_04585 [Bacteroides oleiciplenus YIT
12058]
Length = 588
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 126/291 (43%), Gaps = 50/291 (17%)
Query: 99 CPKCKGGGRS-LERSLSVHIIQDGDFAMWRCFRVDCGWAG--------RAFAGSNKIRKV 149
CP+C+ R+ ++SLSV++ D + C CGW G R ++ R+
Sbjct: 23 CPQCRETRRNKRDKSLSVNL----DNGKFLCHH--CGWKGYAPDETELRERRQKDEYRQR 76
Query: 150 MSSRQVAEKSLGLEP----LGEKLIAYLG-ERMISEGTLQRNSVMQRLH--------DQA 196
M +P L EK YL R +SE ++ + ++ +
Sbjct: 77 MHQLPSHFHRPVFDPTHLSLSEKTGHYLVLVRCLSESAIRYLQITEQEEFMPQSGEKENC 136
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEA 256
I F Y+ NG LV K+RS ++ F+ K E Y +D I T+E I+ EGE+D S
Sbjct: 137 ICFNYFENGELVNTKFRSGQKHFKMVKDAELIPYNIDGILNTSECIVTEGELDAASFITI 196
Query: 257 GFQNCVSVPSGAPPKVS--NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHA 314
G ++ VSVPSGA ++ +R +P H + + + D D+ G
Sbjct: 197 GRKDTVSVPSGANSNLAWLDRFIP---------------THFEDKKTVYIAVDEDSAGLK 241
Query: 315 LAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
L EEL RRLG +RC V + KD NE L G +L + AE
Sbjct: 242 LREELVRRLGAERCRIVHFGPG-----CKDGNEHLVKYGADSLGICLAQAE 287
>gi|423225958|ref|ZP_17212425.1| hypothetical protein HMPREF1062_04611 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392631232|gb|EIY25208.1| hypothetical protein HMPREF1062_04611 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 604
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 123/292 (42%), Gaps = 50/292 (17%)
Query: 98 LCPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRVDCGWA------------GRAFAGSN 144
+CP+C G +SLS+ D C+ CG+ + N
Sbjct: 22 ICPQCNDTRGHKGNKSLSI------DLDKGVCYCHHCGYKLYVPDDTEERERQQRKENYN 75
Query: 145 KIRKVMSSRQVAEKSLGLEPLGEKLIAY------LGERMISEGTLQRNSVMQRL-----H 193
+ RK+ S + L EKL Y L +R++++ + V RL
Sbjct: 76 RARKLPSHFRRPVFDPKRTTLSEKLEQYWTQERCLAQRLLADLHITEERV--RLPESCEE 133
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ + F Y+ G L+ KYRS + F KG E Y +D I +T E II EGE D +
Sbjct: 134 ENCLCFNYFEGGTLINTKYRSGRKHFMMVKGAELIPYNIDAILDTPECIITEGEFDAAAF 193
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G ++ +SVP+GA SN R ++ H + I + D D+ G
Sbjct: 194 MTVGRKDVISVPAGAQ---SNLNWMDRFVES----------HFEPKKLIYIAVDEDSSGR 240
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
L++EL RRLG DRC V + + KDANE L G +L +E AE
Sbjct: 241 LLSQELVRRLGSDRCRLVHFGPE-----CKDANEHLIKYGAESLLITLEQAE 287
>gi|299145381|ref|ZP_07038449.1| DNA primase/helicase [Bacteroides sp. 3_1_23]
gi|298515872|gb|EFI39753.1| DNA primase/helicase [Bacteroides sp. 3_1_23]
Length = 612
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 150 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEGELDAASS 209
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGFQ+ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 210 IAAGFQSVISVPAGAN---SNLSWLDRFMET----------HFEDLKEIIIAVDADSAGI 256
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 257 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 302
>gi|336416370|ref|ZP_08596705.1| hypothetical protein HMPREF1017_03813 [Bacteroides ovatus
3_8_47FAA]
gi|335938787|gb|EGN00671.1| hypothetical protein HMPREF1017_03813 [Bacteroides ovatus
3_8_47FAA]
Length = 597
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 135 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEGELDAASS 194
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGFQ+ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 195 IAAGFQSVISVPAGAN---SNLSWLDRFMET----------HFEDLEEIIIAVDADSAGI 241
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 242 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 287
>gi|317059597|ref|ZP_07924082.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313685273|gb|EFS22108.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 769
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 26/210 (12%)
Query: 158 KSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER 217
KS + LGE + YL R ISE L R + R + + P +V KYR+M++
Sbjct: 80 KSRADKHLGEDWLTYLKGRGISEKGLGRLVRLGR--NNTMMIPVTDGEHVVSIKYRTMDK 137
Query: 218 KFRQEKGTE-KWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRE 276
K EKG++ +L +I + +IIVEGEID LS EAG+ N VS+P GA +
Sbjct: 138 KMSSEKGSQSNYLVNWQNIKNKSYLIIVEGEIDLLSAIEAGYDNVVSLPFGA------KN 191
Query: 277 LPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELAR--RLGKDRCWRVRWP 334
L E +Q W ++ S+I + D D PG +E+ R K++ V
Sbjct: 192 LKAIE----HQKTW-----IESFSKITIAVDNDIPGEECKKEIIEILRRVKNKVHEVN-- 240
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENA 364
F +KD NEVL+ G A+ +I+ A
Sbjct: 241 ----FGTYKDLNEVLQDKGVEAIEAIIKAA 266
>gi|423299669|ref|ZP_17277694.1| hypothetical protein HMPREF1057_00835 [Bacteroides finegoldii
CL09T03C10]
gi|408473478|gb|EKJ92000.1| hypothetical protein HMPREF1057_00835 [Bacteroides finegoldii
CL09T03C10]
Length = 600
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERK-FRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLS 252
++ + F Y+ +G LV K+RS++ K F+ +G E Y +D + II EGE+D S
Sbjct: 135 ERCVCFNYFEDGQLVNTKFRSVDAKHFKMVQGAELIPYNIDSVLGQTSCIIHEGELDAAS 194
Query: 253 VEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG 312
AGF++ +SVP+GA SN R +T H + ++ +I+ D D+ G
Sbjct: 195 SLAAGFKSVISVPAGAN---SNLSWLDRFMET----------HFEDLTEVIIAVDTDSAG 241
Query: 313 HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L +EL RLG +RC V + KDANE L G +LR IE A
Sbjct: 242 LQLRDELINRLGAERCRVVTYGPG-----CKDANEHLCKYGVASLRVAIEQA 288
>gi|260642353|ref|ZP_05415529.2| DNA primase/helicase [Bacteroides finegoldii DSM 17565]
gi|260622579|gb|EEX45450.1| hypothetical protein BACFIN_06917 [Bacteroides finegoldii DSM
17565]
Length = 613
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERK-FRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLS 252
++ + F Y+ +G LV K+RS++ K F+ +G E Y +D + II EGE+D S
Sbjct: 148 ERCVCFNYFEDGQLVNTKFRSVDAKHFKMVQGAELIPYNIDSVLGQTSCIIHEGELDAAS 207
Query: 253 VEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG 312
AGF++ +SVP+GA SN R +T H + ++ +I+ D D+ G
Sbjct: 208 SLAAGFKSVISVPAGAN---SNLSWLDRFMET----------HFEDLTEVIIAVDTDSAG 254
Query: 313 HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L +EL RLG +RC V + KDANE L G +LR IE A
Sbjct: 255 LQLRDELINRLGAERCRVVAYGPG-----CKDANEHLCKYGVASLRVAIEQA 301
>gi|423276974|ref|ZP_17255888.1| hypothetical protein HMPREF1203_00105 [Bacteroides fragilis HMW
610]
gi|404587450|gb|EKA91989.1| hypothetical protein HMPREF1203_00105 [Bacteroides fragilis HMW
610]
Length = 606
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ + F Y+ +G LV K+R++++ FR G E Y +D + T E I EGE+D S
Sbjct: 139 ERCLCFNYFEDGKLVNTKFRTLQKHFRMVSGAELIPYHIDALRGTPECIFTEGELDAASF 198
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G ++ VSVPSGA SN + R +T HL+ I + D D G
Sbjct: 199 MAIGRRDVVSVPSGAN---SNLQWMDRFVET----------HLEDKRLIYIAVDTDEAGL 245
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
L EL RRLG +RC V + KDANE L G +LR +E AE
Sbjct: 246 GLRAELLRRLGVERCRVVVYGPG-----CKDANEHLCKYGAESLRIALEQAE 292
>gi|345511634|ref|ZP_08791174.1| DNA primase/helicase [Bacteroides sp. D1]
gi|229443930|gb|EEO49721.1| DNA primase/helicase [Bacteroides sp. D1]
Length = 597
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 135 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEGELDAASS 194
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGF++ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 195 IAAGFKSAISVPAGAN---SNLSWLDRFMET----------HFEDLEEIIIAVDADSAGI 241
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 242 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 287
>gi|262407888|ref|ZP_06084436.1| DNA primase/helicase [Bacteroides sp. 2_1_22]
gi|262354696|gb|EEZ03788.1| DNA primase/helicase [Bacteroides sp. 2_1_22]
gi|295084423|emb|CBK65946.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 612
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 150 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEGELDAASS 209
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGF++ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 210 IAAGFKSAISVPAGAN---SNLSWLDRFMET----------HFEDLEEIIIAVDADSAGI 256
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 257 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 302
>gi|423213312|ref|ZP_17199841.1| hypothetical protein HMPREF1074_01373 [Bacteroides xylanisolvens
CL03T12C04]
gi|423287009|ref|ZP_17265860.1| hypothetical protein HMPREF1069_00903 [Bacteroides ovatus
CL02T12C04]
gi|392673841|gb|EIY67296.1| hypothetical protein HMPREF1069_00903 [Bacteroides ovatus
CL02T12C04]
gi|392693772|gb|EIY87002.1| hypothetical protein HMPREF1074_01373 [Bacteroides xylanisolvens
CL03T12C04]
Length = 597
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 135 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEGELDAASS 194
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGF++ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 195 IAAGFKSAISVPAGAN---SNLSWLDRFMET----------HFEDLEEIIIAVDADSAGI 241
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 242 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 287
>gi|423297971|ref|ZP_17276031.1| hypothetical protein HMPREF1070_04696 [Bacteroides ovatus
CL03T12C18]
gi|392664608|gb|EIY58146.1| hypothetical protein HMPREF1070_04696 [Bacteroides ovatus
CL03T12C18]
Length = 597
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 135 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEGELDAASS 194
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGF++ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 195 IAAGFKSAISVPAGAN---SNLSWLDRFMET----------HFEDLEEIIIAVDADSAGI 241
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 242 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 287
>gi|380695157|ref|ZP_09860016.1| DNA primase/helicase [Bacteroides faecis MAJ27]
Length = 602
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 22/174 (12%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ + F Y+ +G LV K+RS + F+ +G E Y +D + II EGE+D S
Sbjct: 136 ERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEGELDAASS 195
Query: 254 EEAGFQNCVSVPSGAPPKVS--NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
AGF++ +SVP+GA +S +R + + H + + II+ D D+
Sbjct: 196 LAAGFKSVISVPAGANANLSWLDRFM---------------ESHFENLKDIIIAVDTDSA 240
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G L +EL RLG +RC + KDANE L G +LR IE AE
Sbjct: 241 GLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAE 289
>gi|294010982|ref|YP_003544442.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
gi|292674312|dbj|BAI95830.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
Length = 482
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 15/188 (7%)
Query: 189 MQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQ--EKGTEKWLYGLDDINETA----EVI 242
++R ++ PY G + KYR K RQ ++G L +D +++ + +I
Sbjct: 29 VERAGRMILSVPYREGGRTLNHKYRDPLDKARQAMDQGAPLTLLNIDCLSDESLAGQPLI 88
Query: 243 IVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS-NRELPPREKDTGYQYLWNCKEHLDKVSR 301
IVEGE D L+ AG + VSVP+GAP + S + EL ++ Y + W + L ++
Sbjct: 89 IVEGEWDFLATLTAGKRRVVSVPNGAPKEASGDDEL---QEGARYAWFWRHYDALSRIKS 145
Query: 302 IILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVI 361
+IL D D PG ALA +L R G +RC V +P + KD N+V+ G L EV+
Sbjct: 146 VILAVDNDEPGKALAADLCRLFGPERCSFVEYP-----AGCKDPNDVVIHSGHQRLVEVL 200
Query: 362 ENAELYQL 369
+ A+ Y +
Sbjct: 201 DAAKPYPV 208
>gi|336405392|ref|ZP_08586071.1| hypothetical protein HMPREF0127_03384 [Bacteroides sp. 1_1_30]
gi|335937973|gb|EGM99867.1| hypothetical protein HMPREF0127_03384 [Bacteroides sp. 1_1_30]
Length = 597
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 135 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEGELDAASS 194
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGFQ+ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 195 IAAGFQSVISVPAGAN---SNLSWLDRFMET----------HFEDLKEIIIAVDADSAGI 241
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +L IE A
Sbjct: 242 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLCIAIEQA 287
>gi|29346582|ref|NP_810085.1| DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29338478|gb|AAO76279.1| DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482]
Length = 599
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ + F Y+ +G LV K+RS + F+ +G E Y +D + II EGE+D S
Sbjct: 136 ERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEGELDAASS 195
Query: 254 EEAGFQNCVSVPSGAPPKVS--NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
GF++ +SVP+GA +S +R + + H + + II+ D D+
Sbjct: 196 LATGFKSVISVPAGANANLSWLDRFM---------------ESHFENLKDIIIAVDTDSA 240
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G L +EL RLG +RC + KDANE L G +LR IE AE
Sbjct: 241 GLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAE 289
>gi|298387690|ref|ZP_06997241.1| DNA primase/helicase [Bacteroides sp. 1_1_14]
gi|298259546|gb|EFI02419.1| DNA primase/helicase [Bacteroides sp. 1_1_14]
Length = 599
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ + F Y+ +G LV K+RS + F+ +G E Y +D + II EGE+D S
Sbjct: 136 ERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEGELDAASS 195
Query: 254 EEAGFQNCVSVPSGAPPKVS--NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
GF++ +SVP+GA +S +R + + H + + II+ D D+
Sbjct: 196 LATGFKSVISVPAGANANLSWLDRFM---------------ESHFENLKDIIIAVDTDSA 240
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G L +EL RLG +RC + KDANE L G +LR IE AE
Sbjct: 241 GLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAE 289
>gi|383112841|ref|ZP_09933628.1| hypothetical protein BSGG_5269, partial [Bacteroides sp. D2]
gi|382948959|gb|EIC71887.1| hypothetical protein BSGG_5269, partial [Bacteroides sp. D2]
Length = 266
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ G L+ K+R++ + F+ +G E Y +D I II EGE+D S
Sbjct: 135 ERCICFNYFEGGQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEGELDAASS 194
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGFQ+ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 195 IAAGFQSVISVPAGAN---SNLSWLDRFMET----------HFEDLKEIIIAVDADSAGI 241
Query: 314 ALAEELARRLGKDRCWRVRW 333
L EL RLG +RC V +
Sbjct: 242 RLRNELINRLGAERCRVVTY 261
>gi|294675400|ref|YP_003576016.1| Toprim domain-containing protein [Prevotella ruminicola 23]
gi|294473238|gb|ADE82627.1| Toprim domain protein [Prevotella ruminicola 23]
Length = 610
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 34/258 (13%)
Query: 128 CFRVD-------CGWAGRAFAGSNKIRKVMSSRQVAEKSLGL------EPLGEKLIAYLG 174
C R+D C G F S+K+ R +K L P+ I YL
Sbjct: 47 CVRLDTMTGLGKCYNCGFKFVISSKVPDYNKKRGYQKKKFKLPDTSKLRPIDGIGINYLL 106
Query: 175 ERMISEGTLQRNSV------MQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKW 228
+R I T + V + +AF Y +V +Y++ + F E E
Sbjct: 107 DRKIQPQTAAKAGVRSATRTFDGIERSCLAFTYREGSKVVNIQYKTTSKDFAVESDCELI 166
Query: 229 LYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQY 288
+ +D +I+ EG +D L++ E GF N +SV +GA V + ++Y
Sbjct: 167 PWNIDAAIGQDTLIVTEGMMDALALMECGFDNVISVSNGAESDVRTFDR--------FRY 218
Query: 289 LWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEV 348
HLD + L D D PG L ++LA G+ RC V W D+ + KDANE+
Sbjct: 219 -----SHLDGIRTFYLAGDMDEPGVELRQKLALYFGEARCRIVEWRVGDDAA--KDANEM 271
Query: 349 LKCLGPGALREVIENAEL 366
L G A+ + I +A+L
Sbjct: 272 LMEHGVDAVLQCINHAQL 289
>gi|293373001|ref|ZP_06619370.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292632069|gb|EFF50678.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 617
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
++ I F Y+ L+ K+R++ + F+ +G E Y +D I II E E+D S
Sbjct: 150 ERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHERELDAASS 209
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
AGF++ +SVP+GA SN R +T H + + II+ DAD+ G
Sbjct: 210 IAAGFKSAISVPAGAN---SNLSWIDRFMET----------HFEDLEEIIIAVDADSAGI 256
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
L EL RLG +RC V + + KDANE L G +LR IE A
Sbjct: 257 RLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQA 302
>gi|224143098|ref|XP_002335987.1| predicted protein [Populus trichocarpa]
gi|222837877|gb|EEE76242.1| predicted protein [Populus trichocarpa]
Length = 947
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 34/233 (14%)
Query: 146 IRKVMSSRQVAEKSLGLEPLGEKLIA----YLGERMISEGTLQRNSVMQRLH--DQAIAF 199
IR+VM R+ +P + A +L R I++ T+ V +++ F
Sbjct: 441 IREVMPEREKKTFKRPAKPQCQTAKAGVKEWLNGRGITDETIAAFRVAEQIRGGKTYAVF 500
Query: 200 PYWHNGVLVGCKYRSM--ERKFRQEKGTEKWLYGLDDINETAEVI-IVEGEIDKLSVEEA 256
PY G LV KYR++ +R RQE G E L+G I+ A + I EGEID +++ +
Sbjct: 501 PYLRAGELVNVKYRNIAEKRDMRQEGGAEPCLFGWHLIDPKARTVAITEGEIDAMTLHQV 560
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
G +SV +GA +Q+L N E LD S I++ D+D G A A
Sbjct: 561 GIP-ALSVNAGA---------------GNHQWLENDWERLDCFSEILIFFDSDEAGKAGA 604
Query: 317 EELARRLGKDRCWRVRWPKKDEFSY---------FKDANEVLKCLGPGALREV 360
+E+ RRLG +RC V P+KD + F A + K L P +R+
Sbjct: 605 QEIVRRLGLERCKLVTLPEKDANEFLQKGACGEDFWHATKEAKTLDPEEMRQA 657
>gi|224153845|ref|XP_002337405.1| predicted protein [Populus trichocarpa]
gi|222838982|gb|EEE77333.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 108/233 (46%), Gaps = 34/233 (14%)
Query: 146 IRKVMSSRQVAEKSLGLEPLGEKLIA----YLGERMISEGTLQRNSVMQRLH--DQAIAF 199
IR+VM R+ +P + A +L R I++ T+ V +++ F
Sbjct: 84 IREVMPEREKKTFKRPAKPQCQTAKAGVKEWLNGRGITDETIAAFRVAEQIRGGKTYAVF 143
Query: 200 PYWHNGVLVGCKYRSM--ERKFRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEA 256
PY G LV KYR++ +R RQE G E L+G I+ A V I EGEID +++ +
Sbjct: 144 PYLRAGELVNVKYRNIAEKRDMRQEGGAEPCLFGWHLIDPKARTVAITEGEIDAMTLHQV 203
Query: 257 GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
G +SV +GA +Q+L N E LD S I++ D+D G A A
Sbjct: 204 GIP-ALSVNAGA---------------GNHQWLENDWERLDCFSEILIFFDSDEAGKAGA 247
Query: 317 EELARRLGKDRCWRVRWPKKDEFSY---------FKDANEVLKCLGPGALREV 360
+E+ RRLG +RC V P+KD + F A + K L P +R+
Sbjct: 248 QEIVRRLGLERCKLVTLPEKDANEFLQKGACGEDFWHATKEAKTLDPEEMRQA 300
>gi|393783851|ref|ZP_10372022.1| hypothetical protein HMPREF1071_02890 [Bacteroides salyersiae
CL02T12C01]
gi|392668293|gb|EIY61794.1| hypothetical protein HMPREF1071_02890 [Bacteroides salyersiae
CL02T12C01]
Length = 605
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 193 HDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLS 252
+ + F Y+ G LV KYRS + F+ G E Y +D I +T E I+ EGE+D S
Sbjct: 137 QENCLCFNYFEEGALVNVKYRSGAKHFKMVAGAELIPYNIDAIADTPECIVTEGELDAAS 196
Query: 253 VEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW---NCKEHLDKVSRIILGTDAD 309
G + +SVPSGA ++ W + H + I + D D
Sbjct: 197 FLATGRADAISVPSGANGNLT----------------WLDRFVESHFENKRLIYIAVDTD 240
Query: 310 TPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
G L EL RR G +RC V + + KDANE L G +LR + AE
Sbjct: 241 AAGLKLRAELLRRFGPERCRIVTYGPE-----CKDANEHLVKYGVESLRIALSQAE 291
>gi|420255615|ref|ZP_14758497.1| hypothetical protein PMI06_08962 [Burkholderia sp. BT03]
gi|398044866|gb|EJL37661.1| hypothetical protein PMI06_08962 [Burkholderia sp. BT03]
Length = 595
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 29/187 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFR------QEKGT 225
+L R +++ T+ V D A+ FP+ +G LV K+ ++R Q +G
Sbjct: 123 WLLSRGLTDETITSFRVASSREDDAVIFPFIRDGELVNVKHLLLKRDVNGKKNTWQAEGA 182
Query: 226 EKWLYGLDDINETAEVI-IVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
E L+G IN VI I EGEID +S+ +AG +SV +GA
Sbjct: 183 EPCLFGWHMINPAQRVIAITEGEIDAMSLHQAGIP-ALSVNAGA---------------G 226
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKD 344
+Q++ + L++ S I L D D PG A+E+A RLG DRC V +PK KD
Sbjct: 227 NHQWIDSDWSKLERFSEIYLCYDNDEPGQNGAKEVANRLGLDRCKIVTFPKA------KD 280
Query: 345 ANEVLKC 351
ANE L+
Sbjct: 281 ANEYLQA 287
>gi|451941130|ref|YP_007461768.1| phage related protein [Bartonella australis Aust/NH1]
gi|451900517|gb|AGF74980.1| phage related protein [Bartonella australis Aust/NH1]
Length = 613
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 175 ERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERKFRQEKGT---EKWLY 230
ER I L+R + ++ +I FP++ +G L K R E + + E L+
Sbjct: 129 ERHIPLEILKRYRIKEK--GNSIIFPFYKPDGTLALVKERLAEAGAKAKPTASQCEPILF 186
Query: 231 GLDDIN-ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYL 289
G ++ + E++I EGEID LS+ G+ VS+P G +G +
Sbjct: 187 GWQALSSKDRELVITEGEIDALSLAAYGYA-AVSIPFGG--------------GSGGKQN 231
Query: 290 W--NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANE 347
W N +HL+ +I L TD DTPG A E+A RLG+ RC+RVR P +KDAN+
Sbjct: 232 WIENEFDHLEAFEKIFLATDMDTPGELAAIEIANRLGRHRCYRVRLP-------YKDAND 284
Query: 348 VLKC-LGPGALREVIENAELY 367
LK L L E A+ +
Sbjct: 285 CLKAGLEDSVLSEAFSQAKSF 305
>gi|241665023|ref|YP_002983383.1| hypothetical protein Rpic12D_3447 [Ralstonia pickettii 12D]
gi|240867050|gb|ACS64711.1| conserved hypothetical protein [Ralstonia pickettii 12D]
Length = 597
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 162 LEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFR- 220
+ P G L ER +S T++ V D AI FPY + L+ K+ ++ER +
Sbjct: 114 VSPAGRVLKYLTEERKLSLETIRAFKVAASKEDDAIVFPYLRDAELINLKHLALERDSKG 173
Query: 221 -----QEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSN 274
Q G E L+G D + ++A+ V+IVEGE+D +S+ E G +SV GA
Sbjct: 174 KKRTWQSAGAEPCLFGWDLVPDSAKAVLIVEGELDAMSLYEYGIA-ALSVNQGA------ 226
Query: 275 RELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
+Q++ + + L++ I L D D G E+A+RLG DRC V++
Sbjct: 227 ---------GNHQWIDSDFDRLERFPEIFLWFDNDEAGQKGVREVAQRLGLDRCRIVKF- 276
Query: 335 KKDEFSYFKDANEVLK 350
KDANE L+
Sbjct: 277 ------RLKDANEALQ 286
>gi|404369188|ref|ZP_10974532.1| hypothetical protein FUAG_00824 [Fusobacterium ulcerans ATCC 49185]
gi|313688474|gb|EFS25309.1| hypothetical protein FUAG_00824 [Fusobacterium ulcerans ATCC 49185]
Length = 770
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 26/204 (12%)
Query: 165 LGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKG 224
LG ++YL R ISE L R + + + + P +V KYR++++K E G
Sbjct: 88 LGGDWLSYLKGRSISEKGLNRFCRLGK--NNTMMIPITDGEKVVAIKYRTIDKKLSCETG 145
Query: 225 TEK-WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKD 283
+ + ++ + +IIVEGEID LS E+G+ N VS+P G
Sbjct: 146 SSSDYFVNWQNVENKSYLIIVEGEIDLLSAVESGYDNVVSIPFGCK-------------- 191
Query: 284 TGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLG--KDRCWRVRWPKKDEFSY 341
+ + N K+ ++ S+IIL D D PG ++ +L K + + V K
Sbjct: 192 -NLKCIDNQKKWIESFSKIILAVDNDVPGIECKNQIIDKLSSIKSKLYTVEMGK------ 244
Query: 342 FKDANEVLKCLGPGALREVIENAE 365
+KD NE+L G + +VI+ A+
Sbjct: 245 YKDFNEILMAEGTDGIIKVIQAAD 268
>gi|373117031|ref|ZP_09531182.1| hypothetical protein HMPREF0995_02018 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669107|gb|EHO34211.1| hypothetical protein HMPREF0995_02018 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 568
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 164 PLGEK--LIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQ 221
P+G+K + Y +R IS TL V Q + Y N VL KYR RK R+
Sbjct: 38 PIGDKSKIYGYFKKRCISPSTLDYADVRQDEEGNIVWNYYDTNDVLTMVKYRP-SRKVRK 96
Query: 222 -------EKGTE--KWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKV 272
+KG + L+ ++ +N + ++I EGE D LS EAGF N VSVP G+
Sbjct: 97 GENKCWCQKGADTCNLLFNMNRVNVNSPLLICEGEPDCLSAIEAGFSNAVSVPLGS---- 152
Query: 273 SNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVR 332
T + ++ + L++ II+ +D D G+ + +E+ RLG R V
Sbjct: 153 -----------TNFHWIEENWDWLEQFDNIIICSDNDEAGYKMQKEVVYRLGSWRTRVVE 201
Query: 333 WPK---KDEFSYF--KDANEVLKCLGPGALREVIENAE 365
P+ D+ F D NE L G + ++I NA+
Sbjct: 202 VPQIFETDDGRKFPVNDLNEALYYFGKERVLDLILNAK 239
>gi|163869018|ref|YP_001610249.1| hypothetical protein Btr_2129 [Bartonella tribocorum CIP 105476]
gi|161018696|emb|CAK02254.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 1136
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVS 300
++I EGEID LS+ G+ VSVP G K + ++ N +HL+
Sbjct: 740 IVITEGEIDALSLAAYGYP-AVSVPFGG------------GKGGKHNWIENEFDHLEAFE 786
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD---------EFSYFKDANEVLKC 351
I L TD D PG A E+A RLG+ RC+RVR P+KD + + K A K
Sbjct: 787 TIFLATDMDQPGEEAAHEIASRLGRHRCYRVRLPRKDANDCLTAGIDAATIKAAFSSAKS 846
Query: 352 LGPGALR 358
P LR
Sbjct: 847 FAPEGLR 853
>gi|420137468|ref|ZP_14645449.1| hypothetical protein PACIG1_0948 [Pseudomonas aeruginosa CIG1]
gi|403249775|gb|EJY63250.1| hypothetical protein PACIG1_0948 [Pseudomonas aeruginosa CIG1]
Length = 603
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 120/273 (43%), Gaps = 54/273 (19%)
Query: 111 RSLSVHIIQDG-----DFA---------MWRCFRVDCGWA-----GRAFAGSNK---IRK 148
+SL VH++ + DFA +WR R +C A R + G + IR
Sbjct: 44 KSLGVHLVGEKAGVWCDFATGESGDLLDLWRLAR-NCDMATALSEARGYLGVQEPKLIRP 102
Query: 149 VMS--SRQVAEKSLGLEP-LGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNG 205
V S S Q +K P + ++AYL R ++E T++ + + Q I FPY NG
Sbjct: 103 VESRKSYQRPDKPRCSTPKVDSVVMAYLKGRGLTEETIKAFKIAE--DGQNIVFPYLRNG 160
Query: 206 VLVGCKYRSMER-----KFRQEKGTEKWLYGLDDINE-TAEVIIVEGEIDKLSVEEAGFQ 259
L+ K +ER K TE L+G I + EV I EGEID ++ + G +
Sbjct: 161 SLIHWKKLGVERPGGKKKITTSSDTEPCLFGWQAIPDGIREVTITEGEIDAMTAWQYG-R 219
Query: 260 NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEEL 319
+SVP G R + Y++ ++L + I L D D PGH EE+
Sbjct: 220 PALSVPFGGGKDGKQRWIE-------YEF-----DNLQRFDVIYLCLDDDEPGHQATEEI 267
Query: 320 ARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCL 352
RRLG+DRC V+ KD NE L L
Sbjct: 268 VRRLGRDRCRLVKLG-------CKDFNEALDAL 293
>gi|319899348|ref|YP_004159445.1| hypothetical protein BARCL_1203 [Bartonella clarridgeiae 73]
gi|319403316|emb|CBI76875.1| protein of unknown function [Bartonella clarridgeiae 73]
Length = 666
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 175 ERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERKFRQEKGT---EKWLY 230
ER I LQR + + I FP++ +G L K R E + + E L+
Sbjct: 129 ERHIPLEILQRYQIGEE--GNKIIFPFYKPDGTLALVKERLAENGAKAKPTLSQCEPILF 186
Query: 231 GLDDINETAE------VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
G ++ ++I EGEID LS+ G+ VSVP G K
Sbjct: 187 GWQALSSKERASTDRTLVITEGEIDALSLAAYGYP-AVSVPFGG------------GKGG 233
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKD 344
++ N +HL+ I L TD DTPG A E+A RLG+ RC+RVR P KD
Sbjct: 234 KQNWIENEFDHLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPD-------KD 286
Query: 345 ANEVLKCLGPGALREVIENAEL 366
AN CL G +I A L
Sbjct: 287 AN---ACLQAGVDASIIHEAFL 305
>gi|319406226|emb|CBI79863.1| hypothetical protein BAR15_180096 [Bartonella sp. AR 15-3]
Length = 655
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 89/210 (42%), Gaps = 34/210 (16%)
Query: 175 ERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERKFRQEKGT---EKWLY 230
ER I LQR + + I FP++ +G L K R E + E L+
Sbjct: 129 ERRIPLEILQRYRIGE--EGNKIIFPFYKPDGTLALVKERLAEDGATAKPTASQCEPILF 186
Query: 231 GL------DDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
G D + ++I EGEID LS+ G+ VSVP G K
Sbjct: 187 GWQALSFKDCASTDRTLVITEGEIDALSLAAYGYP-AVSVPFGG------------GKGG 233
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD------- 337
++ N +HL+ I L TD DTPG A E+A RLG+ RC+RVR P KD
Sbjct: 234 KQNWIENEFDHLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPGKDANACLQA 293
Query: 338 --EFSYFKDANEVLKCLGPGALREVIENAE 365
+ S +A + P LR V++ E
Sbjct: 294 GIDASVIHEAFLQAQSFTPKGLRHVLDYKE 323
>gi|423716067|ref|ZP_17690284.1| hypothetical protein MEE_01476, partial [Bartonella elizabethae
F9251]
gi|395427387|gb|EJF93483.1| hypothetical protein MEE_01476, partial [Bartonella elizabethae
F9251]
Length = 450
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 232 LDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWN 291
L N T ++I EGEID LS+ G+ VSVP G K + ++ N
Sbjct: 47 LSSTNRT--IVITEGEIDALSLAAYGYP-AVSVPFGG------------GKGGKHNWIEN 91
Query: 292 CKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
+HL+ I L TD D PG A E+A RLG+ RC+RVR P+ KDANE C
Sbjct: 92 EFDHLEAFETIFLATDMDQPGEEAAHEIANRLGRHRCYRVRLPR-------KDANE---C 141
Query: 352 LGPGALREVIENA 364
L G I+ A
Sbjct: 142 LTAGIDAATIKAA 154
>gi|262067762|ref|ZP_06027374.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
gi|291378488|gb|EFE86006.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
Length = 761
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 27/191 (14%)
Query: 163 EPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQE 222
+ L +K + YL R I E N + + +++ P + +VG KYRS+++K E
Sbjct: 83 KKLNKKWLEYLKSRGI-ENENNINKLYRMGTHESMMIPVTNGETVVGIKYRSLDKKLWSE 141
Query: 223 KGT-EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPRE 281
KG+ +L +I + ++IVEGEID LS EAG +N VS+PSGA
Sbjct: 142 KGSCLDYLLNWQNITDFDYLVIVEGEIDLLSALEAGVENTVSLPSGA------------- 188
Query: 282 KDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDR---CWRVRWPKKDE 338
T + + K L K +II+ TD D G + + L +D ++ + KK
Sbjct: 189 --TNIKCIKTQKNWLSKFQKIIIATDDDEAGVEARKRIVHEL-RDLLIPLYKTYFYKK-- 243
Query: 339 FSYFKDANEVL 349
KD NEVL
Sbjct: 244 ----KDVNEVL 250
>gi|395779241|ref|ZP_10459736.1| hypothetical protein MCU_01437, partial [Bartonella elizabethae
Re6043vi]
gi|395416083|gb|EJF82487.1| hypothetical protein MCU_01437, partial [Bartonella elizabethae
Re6043vi]
Length = 431
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 232 LDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWN 291
L N T ++I EGEID LS+ G+ VSVP G K + ++ N
Sbjct: 28 LSSTNRT--IVITEGEIDALSLAAYGYP-AVSVPFGG------------GKGGKHNWIEN 72
Query: 292 CKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
+HL+ I L TD D PG A E+A RLG+ RC+RVR P+ KDANE C
Sbjct: 73 EFDHLEAFETIFLATDMDQPGEEAAHEIANRLGRHRCYRVRLPR-------KDANE---C 122
Query: 352 LGPGALREVIENA 364
L G I+ A
Sbjct: 123 LTAGIDAATIKAA 135
>gi|294782201|ref|ZP_06747527.1| toprim domain-containing protein [Fusobacterium sp. 1_1_41FAA]
gi|294480842|gb|EFG28617.1| toprim domain-containing protein [Fusobacterium sp. 1_1_41FAA]
Length = 760
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 160 LGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKF 219
L + L +K + YL R I E N + + +++ P + +VG KYRS+++K
Sbjct: 79 LNSKKLNKKWLDYLKSRGI-ENENNINKLYRMGTHESMIIPVTNGETVVGIKYRSLDKKL 137
Query: 220 RQEKGT-EKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
EKG+ +L +I + ++IVEGEID LS EAG +N VS+PSGA
Sbjct: 138 WSEKGSCLDYLLNWQNITDFDYLVIVEGEIDLLSALEAGVENTVSLPSGA---------- 187
Query: 279 PREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDR---CWRVRWPK 335
T + + K L K +II+ TD D G + + L +D ++ + K
Sbjct: 188 -----TNIKCIKMQKNWLSKFQKIIIATDDDEAGVEARKRIVHEL-RDLLIPLYKTYFYK 241
Query: 336 KDEFSYFKDANEVL 349
K KD NEVL
Sbjct: 242 K------KDVNEVL 249
>gi|429106174|ref|ZP_19168043.1| DNA primase/helicase [Cronobacter malonaticus 681]
gi|426292897|emb|CCJ94156.1| DNA primase/helicase [Cronobacter malonaticus 681]
Length = 498
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E I YL R IS T + V+ +R D A+ FPY +G L+ K S ER
Sbjct: 101 EHHIEYLQSRGISPETAKAYEVVSGKVWNGERELD-ALVFPYKRDGELIQVKRISTERPN 159
Query: 219 ----FRQEKGTEKWLYGLDDIN-ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ + V++ EGEID +S + G N +SVP G
Sbjct: 160 GKKVIMAEGDCEPCLFGWQALDSKVRSVVLCEGEIDCMSYSQYGI-NALSVPFGGG---- 214
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC VR
Sbjct: 215 --------KGAKQQWIEFEFHNLDRFEEIWISMDNDEVGQEAAREIASRLGEHRCRMVRL 266
Query: 334 PKKDEFSYFKDA---NEVLKCLGPGAL---REVIENAELYQ 368
P+KD D +E+ +CLG A E+ E YQ
Sbjct: 267 PRKDINECLMDGISEDEIWQCLGGAAFFDPEELYSAREFYQ 307
>gi|240851150|ref|YP_002972553.1| phage related helicase [Bartonella grahamii as4aup]
gi|240268273|gb|ACS51861.1| phage related helicase [Bartonella grahamii as4aup]
Length = 627
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 29/135 (21%)
Query: 232 LDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW- 290
L N T ++I EGEID LS+ G+ VSVP G +G ++ W
Sbjct: 224 LSSTNRT--IVITEGEIDALSLAAYGYP-AVSVPFGG--------------GSGGKHNWI 266
Query: 291 -NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVL 349
N +HL+ I L TD D PG A E+A RLG+ RC+RVR P KDAN+
Sbjct: 267 ENEFDHLESFETIFLATDMDQPGEEAAREIASRLGRHRCYRVRLPH-------KDAND-- 317
Query: 350 KCLGPGALREVIENA 364
CL G R I+ A
Sbjct: 318 -CLTAGIDRATIKAA 331
>gi|423713555|ref|ZP_17687815.1| hypothetical protein ME1_00561 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395422271|gb|EJF88476.1| hypothetical protein ME1_00561 [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 686
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VSVP G +G ++ W N +HL+
Sbjct: 266 IVITEGEIDALSLAAYGYP-AVSVPFGG--------------GSGGKHNWIENEFDHLES 310
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
I L TD D PG A E+A RLG+ RC+RVR P+KD
Sbjct: 311 FETIFLATDMDKPGEEAAREIANRLGRHRCYRVRLPRKD 349
>gi|319409296|emb|CBI82940.1| hypothetical protein BARSC_190213 [Bartonella schoenbuchensis R1]
Length = 653
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 197 IAFPYWH-NGVLVGCKYRSMERKFRQEKGT---EKWLYGLDDINETAE-VIIVEGEIDKL 251
I FP++ +G L K R+ + + + E L+G + T ++I EGEID L
Sbjct: 149 IIFPFYKPDGTLALVKARAAQEGAKAKPTASHCEPILFGWQALCPTQRTLVITEGEIDAL 208
Query: 252 SVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
S+ G+ +SVP G K + ++ N +HL+ +I L TD D P
Sbjct: 209 SLAAYGYP-ALSVPFGG------------GKGGKHAWIENEFDHLEPFEKIFLATDMDKP 255
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
G A E+A RLG+ RC+RV P KDAN+ LK
Sbjct: 256 GEEAALEIAHRLGRHRCYRVHLP-------CKDANDCLKA 288
>gi|301103400|ref|XP_002900786.1| twinkle protein, putative [Phytophthora infestans T30-4]
gi|262101541|gb|EEY59593.1| twinkle protein, putative [Phytophthora infestans T30-4]
Length = 666
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 21/149 (14%)
Query: 207 LVGCKYRSMERKFRQE---KGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCV 262
+V K R++E K +Q+ KG L+G + + TA E+++ EGE D ++V +A V
Sbjct: 203 VVRLKLRAVEDKAKQQLVPKGGSWGLFGWNTVPATAQELVLTEGEFDAMAVHQATGMAAV 262
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
S+P+G + LPP + L++ RI L D D G + E+ A +
Sbjct: 263 SLPNGC------QSLPP-----------SVLPLLERFKRIYLWMDNDASGQSNVEKFAAK 305
Query: 323 LGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
LG RC+ VR P S KDAN+ L+
Sbjct: 306 LGMARCYIVRMPANAASSSIKDANDALRA 334
>gi|451942529|ref|YP_007463166.1| phage related protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451901916|gb|AGF76378.1| phage related protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 637
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VSVP G +G ++ W N +HL+
Sbjct: 217 IVITEGEIDALSLAAYGYP-AVSVPFGG--------------GSGGKHNWIENEFDHLES 261
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
I L TD D PG A E+A RLG+ RC+RVR P+KD
Sbjct: 262 FETIFLATDMDKPGEEAAREIANRLGRHRCYRVRLPRKD 300
>gi|334124584|ref|ZP_08498585.1| gp61 family protein [Enterobacter hormaechei ATCC 49162]
gi|333388417|gb|EGK59595.1| gp61 family protein [Enterobacter hormaechei ATCC 49162]
Length = 623
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 168 KLIAYLGERMISEGTLQRNSVMQRL---HDQ-----AIAFPYWHNGVLVGCKYRSMERK- 218
K YL R I+ T R V + HD+ A+AFPY NG L+ K ER
Sbjct: 118 KCYDYLASRGITRETADRFKVTDAVVWYHDESREVPAVAFPYIRNGELLQVKRIGTERPN 177
Query: 219 ----FRQEKGTEKWLYGLDDINE-TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G +++ T V++ EGEID ++ + G+ + +SVP G
Sbjct: 178 GKKLIMAEADCEPCLFGWQALDKNTRLVVLCEGEIDCMTFTQLGY-DALSVPFGGGKGAK 236
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
+ + Y+Y +LD+ I L D D G A+E+ARRLG+ RC V
Sbjct: 237 QQWIE-------YEY-----HNLDRFQEIWLCLDNDNVGREAAKEIARRLGEHRCRMVEL 284
Query: 334 PKKD 337
P KD
Sbjct: 285 PHKD 288
>gi|395780749|ref|ZP_10461204.1| hypothetical protein MCW_01291 [Bartonella washoensis 085-0475]
gi|395417404|gb|EJF83742.1| hypothetical protein MCW_01291 [Bartonella washoensis 085-0475]
Length = 641
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 233 DDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW-- 290
D ++ ++I EGEID LS+ G+ VSVP G G ++ W
Sbjct: 213 DFCSKNRTLVITEGEIDALSLAAYGYP-AVSVPFGG--------------GVGGKHNWIE 257
Query: 291 NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD---------EFSY 341
N +HL+ I L TD D PG A E+A RLG+ RC+RVR P+KD + +
Sbjct: 258 NEFDHLEPFETIFLATDMDNPGEEAAHEIASRLGRHRCYRVRLPRKDANDCLTAGVDTAT 317
Query: 342 FKDANEVLKCLGPGALR 358
K A K P LR
Sbjct: 318 IKAAFSSAKSFAPKGLR 334
>gi|423711659|ref|ZP_17685964.1| hypothetical protein MCQ_00528 [Bartonella washoensis Sb944nv]
gi|395413520|gb|EJF79985.1| hypothetical protein MCQ_00528 [Bartonella washoensis Sb944nv]
Length = 648
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 233 DDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW-- 290
D ++ ++I EGEID LS+ G+ VSVP G G ++ W
Sbjct: 220 DFCSKNRTLVITEGEIDALSLAAYGYP-AVSVPFGG--------------GVGGKHNWIE 264
Query: 291 NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD---------EFSY 341
N +HL+ I L TD D PG A E+A RLG+ RC+RVR P+KD + +
Sbjct: 265 NEFDHLEPFETIFLATDMDNPGEEAAHEIASRLGRHRCYRVRLPRKDANDCLTAGVDTAT 324
Query: 342 FKDANEVLKCLGPGALR 358
K A K P LR
Sbjct: 325 IKAAFSSAKSFAPKGLR 341
>gi|395781233|ref|ZP_10461656.1| hypothetical protein MCY_00053 [Bartonella rattimassiliensis 15908]
gi|395421610|gb|EJF87850.1| hypothetical protein MCY_00053 [Bartonella rattimassiliensis 15908]
Length = 641
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 27/126 (21%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VSVP G +G ++ W N +HL+
Sbjct: 236 LVITEGEIDALSLAAYGYP-AVSVPFGG--------------GSGSKHNWIENEFDHLET 280
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
I L TD D PG A E+A RLG+ RC+RV P KDAN+ CL G R
Sbjct: 281 FETIFLATDMDKPGEEAAHEIASRLGRHRCYRVLLP-------LKDAND---CLTAGIDR 330
Query: 359 EVIENA 364
I++A
Sbjct: 331 ATIQSA 336
>gi|294646762|ref|ZP_06724385.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294807707|ref|ZP_06766500.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|292637922|gb|EFF56317.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294445143|gb|EFG13817.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 436
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 223 KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
+G E Y +D I II EGE+D S AGF++ +SVP+GA SN R
Sbjct: 3 QGAELIPYNIDSILGQTSCIIHEGELDAASSIAAGFKSAISVPAGAN---SNLSWLDRFM 59
Query: 283 DTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF 342
+T H + + II+ DAD+ G L EL RLG +RC V + +
Sbjct: 60 ET----------HFEDLEEIIIAVDADSAGIRLRNELINRLGAERCRVVTYGPE-----C 104
Query: 343 KDANEVLKCLGPGALREVIENA 364
KDANE L G +LR IE A
Sbjct: 105 KDANEHLCKYGIASLRIAIEQA 126
>gi|395783865|ref|ZP_10463713.1| hypothetical protein ME3_00369 [Bartonella melophagi K-2C]
gi|395425133|gb|EJF91303.1| hypothetical protein ME3_00369 [Bartonella melophagi K-2C]
Length = 645
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 197 IAFPYWH-NGVLVGCKYRSMERKFRQEKGT---EKWLYGLDDINETAE-VIIVEGEIDKL 251
I FP++ +G L K R+ + + + E L+G + T ++I EGEID L
Sbjct: 149 IIFPFYKPDGRLALVKVRAAQDGAKAKPTASHCEPILFGWQALCPTQRTLVITEGEIDAL 208
Query: 252 SVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
S+ G+ +SVP G K + ++ N +HL+ +I L TD D P
Sbjct: 209 SLAAYGYP-ALSVPFGG------------GKGGKHAWIENEFDHLEPFEKIFLATDMDKP 255
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
G A E+A RLG+ RC+RV P KDAN+ LK
Sbjct: 256 GEEAALEIAHRLGRHRCYRVHLP-------CKDANDCLKA 288
>gi|395787910|ref|ZP_10467489.1| hypothetical protein ME7_00824 [Bartonella birtlesii LL-WM9]
gi|395410045|gb|EJF76622.1| hypothetical protein ME7_00824 [Bartonella birtlesii LL-WM9]
Length = 706
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 24/113 (21%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ +SVP G G ++ W N +HL+
Sbjct: 292 IVITEGEIDALSLATYGYP-ALSVPFGG--------------GVGGKHNWIENEFDHLEA 336
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
I L TD D PG A A E+A RLG+ RC+RV P KDANE L
Sbjct: 337 FETIFLATDMDKPGEAAAHEIASRLGRHRCYRVHLP-------LKDANECLTA 382
>gi|431810342|ref|YP_007237227.1| putative DNA primase\helicase [Pseudomonas phage AF]
gi|409994719|gb|AFV50665.1| putative DNA primase\helicase [Pseudomonas phage AF]
Length = 599
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 28/194 (14%)
Query: 169 LIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER-----KFRQEK 223
++AYL R ++E T++ + ++ + I FP+ +G L+ K ++R K K
Sbjct: 124 VMAYLKGRGLTEETIKAFKIGEQGRN--ILFPFLRDGQLIHWKTLGVDRQDGKKKIMAAK 181
Query: 224 GTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
+E L+G I A EV I EGEID +S + G + +SVP G
Sbjct: 182 DSEPCLFGWQAIPSDAREVTITEGEIDAMSAWQYG-RPALSVPMGG-------------- 226
Query: 283 DTGYQYLWNCKEH--LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD--- 337
TG + W E+ L++ I L D D PG +E+ +RLG++RC V+ KD
Sbjct: 227 GTGAKQNWIEHEYKNLERFDVIYLCLDDDAPGQEATDEIIKRLGRERCRVVKLGCKDFNT 286
Query: 338 EFSYFKDANEVLKC 351
FS + D +++ +C
Sbjct: 287 TFSLYYDKDDIDQC 300
>gi|319407703|emb|CBI81351.1| hypothetical protein B11C_190057 [Bartonella sp. 1-1C]
Length = 681
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 197 IAFPYWH-NGVLVGCKYRSMERKFRQEKGT----EKWLYG-----LDDINETAE-VIIVE 245
I FP++ +G L K R + + K T E L+G D + T ++I E
Sbjct: 151 IIFPFYKPDGTLALVKER-LAKNGATAKPTASQCEPILFGWQALSFKDCDSTDRTLVITE 209
Query: 246 GEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILG 305
GEID LS+ G+ VSVP G K ++ N + L+ I L
Sbjct: 210 GEIDALSLAAYGYP-AVSVPFGG------------GKGGKQNWIENEFDRLESFETIFLA 256
Query: 306 TDADTPGHALAEELARRLGKDRCWRVRWPKKD---------EFSYFKDANEVLKCLGPGA 356
TD DTPG A E+A RLG+ RC+RVR P KD + S +A + P
Sbjct: 257 TDMDTPGEEAAFEIAHRLGRHRCYRVRLPSKDANACLQAGVDASIIHEAFLQAQSFTPKG 316
Query: 357 LREVIENAE 365
LR V++ E
Sbjct: 317 LRHVLDYKE 325
>gi|410658448|ref|YP_006910819.1| DNA primase/helicase [Dehalobacter sp. DCA]
gi|410661435|ref|YP_006913806.1| DNA primase/helicase [Dehalobacter sp. CF]
gi|409020803|gb|AFV02834.1| DNA primase/helicase [Dehalobacter sp. DCA]
gi|409023791|gb|AFV05821.1| DNA primase/helicase [Dehalobacter sp. CF]
Length = 607
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 29/219 (13%)
Query: 151 SSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHD--QAIAFPYWHNGVLV 208
+ +Q + + L + I + R I++ TL V + + F Y+ + L
Sbjct: 97 TKKQYILPQIKMRELSKAAIDLMAVRKITKQTLDAWRVKESTWNGVNVYVFQYFQDNTLK 156
Query: 209 GCKYRSMER---KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVP 265
YR +++ K EK TE L+G+ + + ++I EG+ D +++ ++G++N SVP
Sbjct: 157 HVTYREIKQGGLKGGCEKNTEPILWGMWHVEDGKPLVITEGQPDAMAIWQSGYKNVASVP 216
Query: 266 SGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGK 325
SGA DT + +L K +IL D D G +A+ ++RRL
Sbjct: 217 SGANSLTW--------IDTCWDWL--------KGREVILWADNDKAGINMADNISRRLDN 260
Query: 326 DRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ KDANEVL GP + E+IE+A
Sbjct: 261 VKVVHA--------EDLKDANEVLYKYGPEKVLEIIESA 291
>gi|289765792|ref|ZP_06525170.1| predicted protein [Fusobacterium sp. D11]
gi|289717347|gb|EFD81359.1| predicted protein [Fusobacterium sp. D11]
Length = 652
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 26/159 (16%)
Query: 195 QAIAFPYWHNGVLVGCKYRSMERKFRQEKGT-EKWLYGLDDINETAEVIIVEGEIDKLSV 253
+++ P + +VG KYRS+++K EKG+ +L +I + ++IVEGEID LS
Sbjct: 5 ESMMIPVTNGETVVGVKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEIDLLSA 64
Query: 254 EEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
EAG +N VS+PSGA T + + K L K +II+ TD D G
Sbjct: 65 LEAGVENTVSLPSGA---------------TNIKCIKTQKNWLSKFQKIIIATDDDEAGI 109
Query: 314 ALAEELARRLGKDR---CWRVRWPKKDEFSYFKDANEVL 349
+ + L +D ++ + KK KD NEVL
Sbjct: 110 EARKRIVYEL-RDLLIPLYKTYFYKK------KDINEVL 141
>gi|395765343|ref|ZP_10445950.1| hypothetical protein MCO_00582, partial [Bartonella sp. DB5-6]
gi|395412373|gb|EJF78881.1| hypothetical protein MCO_00582, partial [Bartonella sp. DB5-6]
Length = 455
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 27/139 (19%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ +SVP G G ++ W N +HL+
Sbjct: 36 IVITEGEIDALSLAAYGYP-ALSVPFGG--------------GVGGKHNWIENEFDHLEP 80
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
I L TD D PG A E+A RLG+ RC+RVR P+ KDAN+ CL G
Sbjct: 81 FETIFLATDMDKPGEEAACEIASRLGRHRCYRVRLPR-------KDAND---CLTAGIDA 130
Query: 359 EVIENAELYQLHVSEEALQ 377
+ I+ A L + E L+
Sbjct: 131 DTIKAAFLSAKSFAPEGLR 149
>gi|317058121|ref|ZP_07922606.1| hypothetical protein FSBG_00129 [Fusobacterium sp. 3_1_5R]
gi|313683797|gb|EFS20632.1| hypothetical protein FSBG_00129 [Fusobacterium sp. 3_1_5R]
Length = 304
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 163 EPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYW---HNGVLVGCKYRSMERKF 219
+ ++++ Y+ R IS+ TL + + R + F Y G +G KYR++++K
Sbjct: 88 QDFTQEMLDYMAGRGISKETLINSKIFNR--NGRFCFFYVGEDEAGTCIGVKYRTIDKKI 145
Query: 220 RQEKGTEKWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
KG+ L + ++ E+ IVEGE+D LS+ E G +N VSVP+GA
Sbjct: 146 SAAKGSVMNLLNWRLVPKDSKELYIVEGEVDLLSLLEIGIKNVVSVPNGAGS-------- 197
Query: 279 PREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
Y Y W L+K +IIL D D G + + RL KK
Sbjct: 198 --HDWIDYHYEW-----LEKFKKIILIMDNDEAGKKGIKAIYDRLKHSEI----EIKKIN 246
Query: 339 FSYFKDANEVL-KCLGPGALREVIENAE 365
++KD NE+L G L++++E E
Sbjct: 247 LLFYKDPNEILMDESGRMKLKKILETGE 274
>gi|395788798|ref|ZP_10468339.1| hypothetical protein ME9_00056 [Bartonella taylorii 8TBB]
gi|395431868|gb|EJF97875.1| hypothetical protein ME9_00056 [Bartonella taylorii 8TBB]
Length = 611
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 27/139 (19%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ +SVP G +G ++ W N +HL+
Sbjct: 212 IVITEGEIDALSLAAYGYP-ALSVPFGG--------------GSGGKHNWIENEFDHLEP 256
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
I L TD D PG A E+A RLG+ RC+RV P+ KDAN+ CL G
Sbjct: 257 FETIFLATDMDKPGEEAAREIASRLGRHRCYRVHLPR-------KDAND---CLTAGIDT 306
Query: 359 EVIENAELYQLHVSEEALQ 377
+ I+ A L + E L+
Sbjct: 307 DTIKAAFLSAKSFTPEGLR 325
>gi|329954623|ref|ZP_08295683.1| toprim domain protein [Bacteroides clarus YIT 12056]
gi|328527164|gb|EGF54168.1| toprim domain protein [Bacteroides clarus YIT 12056]
Length = 684
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 36/196 (18%)
Query: 184 QRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSME-------RKFRQEKGTEKWL-YGLDDI 235
++N+V H IA+ + NG V KYRS + + + QE T Y +D I
Sbjct: 201 EKNAVGMMYH--CIAYVNYINGQPVNVKYRSCDVSASGYTKCWSQESPTTPCPPYNIDCI 258
Query: 236 N-------ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQY 288
N +I+ EGE D L++ EAG+ +SVP+GA +S G++
Sbjct: 259 NPLRIAEENVPRLIVTEGERDVLTLHEAGYPYVISVPNGAASDLSK----------GFEA 308
Query: 289 LWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEV 348
+ LD+V +++ D D PG L + LA G RC P KD ++V
Sbjct: 309 F---RPWLDRVRELVICGDCDLPGRTLVKHLADYFGT-RCLFTVLPGG-----CKDISDV 359
Query: 349 LKCLGPGALREVIENA 364
L G G +RE+I++A
Sbjct: 360 LVMYGAGVVREIIDSA 375
>gi|395767793|ref|ZP_10448325.1| hypothetical protein MCS_01258 [Bartonella doshiae NCTC 12862]
gi|395413600|gb|EJF80063.1| hypothetical protein MCS_01258 [Bartonella doshiae NCTC 12862]
Length = 649
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 24/111 (21%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VS+P G TG ++ W N +HL+
Sbjct: 245 IVITEGEIDALSLAAYGYP-AVSLPFGG--------------GTGGKHNWIENEFDHLEI 289
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVL 349
I L TD D PG A E+A RLG+ RC+RV P+ KDANE L
Sbjct: 290 FETIFLATDMDKPGEEAAHEIANRLGRHRCYRVHLPR-------KDANECL 333
>gi|348686575|gb|EGZ26390.1| hypothetical protein PHYSODRAFT_479432 [Phytophthora sojae]
Length = 673
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 207 LVGCKYRSMERKFRQE---KGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCV 262
+V K R++E K +Q+ KG L+G + + A E+++ EGE D ++V +A V
Sbjct: 202 VVRLKIRAVEDKAKQQLVPKGGSWGLFGWNTVPTAANELVLTEGEFDAMAVHQATGMPAV 261
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
S+P+G + LPP + L++ RI L D D G + E+ A +
Sbjct: 262 SLPNGC------QSLPP-----------SVLPLLERFKRIYLWMDNDASGQSNVEKFASK 304
Query: 323 LGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
LG RC+ VR P S KDAN+ L+
Sbjct: 305 LGMTRCYIVRLPANASSSPVKDANDALRA 333
>gi|319404739|emb|CBI78341.1| hypothetical protein BARRO_120115 [Bartonella rochalimae ATCC
BAA-1498]
Length = 679
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 175 ERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERKFRQEKGT---EKWLY 230
ER I LQ+ + + I FP++ +G L K R E + E L+
Sbjct: 129 ERCIPLEILQQYRIGEE--GNKIIFPFYKPDGTLALVKERLAENGATAKPTASQCEPILF 186
Query: 231 GL------DDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
G D + ++I EGEID LS+ G+ VSVP G K
Sbjct: 187 GWQALSFKDCASTDRTLVITEGEIDALSLAAYGYP-AVSVPFGG------------GKGG 233
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD------- 337
++ N + L+ I L TD DTPG A E+A RLG+ RC+RVR P KD
Sbjct: 234 KQNWIENEFDRLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPGKDANACLQA 293
Query: 338 --EFSYFKDANEVLKCLGPGALREVIENAE 365
+ S +A + P LR V++ E
Sbjct: 294 GVDASIIHEAFLQAQSFTPKGLRHVLDYKE 323
>gi|403530941|ref|YP_006665470.1| phage-like protein [Bartonella quintana RM-11]
gi|403233012|gb|AFR26755.1| phage related protein [Bartonella quintana RM-11]
Length = 850
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 225 TEKWLYGLDD--INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
T++ L+ + ++ ++I EGEID LS+ G+ VSVP G +
Sbjct: 412 TDRALFSTNQMPVSTNRTIVITEGEIDALSLAAYGYP-AVSVPFGG------------GR 458
Query: 283 DTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
+ ++ N +HL+ I L TD D PG A E+A RLG RC RVR P+KD
Sbjct: 459 GGKHNWIENEFDHLESFETIFLATDMDKPGEEAAREIANRLGLHRCHRVRLPRKD 513
>gi|421487428|ref|ZP_15934859.1| hypothetical protein QWC_31919, partial [Achromobacter piechaudii
HLE]
gi|400194318|gb|EJO27423.1| hypothetical protein QWC_31919, partial [Achromobacter piechaudii
HLE]
Length = 238
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 27/183 (14%)
Query: 172 YLGERMISEGTLQRNSVM-QRLHDQAIA-FPYWHNGVLVGCKYR--SMERKFRQEKGTEK 227
+L R ++E T+ + Q + +A A FPY G + KYR S ++ RQE G E
Sbjct: 15 WLMSRGLTEETIAAFQIAEQERNGKAYAVFPYLREGEFINAKYRCVSDKKDMRQEGGAEP 74
Query: 228 WLYGLDDIN-ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGY 286
L+G I+ +T V I EGEID ++ + G + +SV +GA +
Sbjct: 75 CLFGWQLIDPKTRTVAIFEGEIDAMTGHQMGIPS-LSVNAGA---------------GNH 118
Query: 287 QYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDAN 346
Q+L N E L + S I L D D G A E+A RLG +RC V + K KDAN
Sbjct: 119 QWLDNDWERLQRFSEIYLCYDNDEAGQKGAREVANRLGLERCKVVLFDKA------KDAN 172
Query: 347 EVL 349
+ +
Sbjct: 173 DYM 175
>gi|329958017|ref|ZP_08298419.1| toprim domain protein [Bacteroides clarus YIT 12056]
gi|328522036|gb|EGF49157.1| toprim domain protein [Bacteroides clarus YIT 12056]
Length = 603
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSV 253
+ + F Y+ LV K+RS ++ F+ K E Y ++ I T + +I EGE D ++
Sbjct: 134 ENCLCFNYFEGDTLVNTKFRSGQKHFKMVKDAELIPYNINGILGTRQAVITEGEFDACAL 193
Query: 254 EEA-GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW---NCKEHLDKVSRIILGTDAD 309
A G ++ +SVP+GA ++ W + H + + + D D
Sbjct: 194 MTATGRRDIISVPAGAQSNLT----------------WIDRFVESHFEDKETVYIAVDED 237
Query: 310 TPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369
G L EL RRLG + C VR+ + KD+NE L G +L ++ AE +
Sbjct: 238 AAGEVLRRELVRRLGAECCKIVRYG-----AGCKDSNEHLIRYGADSLAICLQQAEEIPI 292
Query: 370 HVSEEALQCTK 380
A C++
Sbjct: 293 EGVATADDCSE 303
>gi|189464137|ref|ZP_03012922.1| hypothetical protein BACINT_00473 [Bacteroides intestinalis DSM
17393]
gi|189437927|gb|EDV06912.1| hypothetical protein BACINT_00473 [Bacteroides intestinalis DSM
17393]
Length = 427
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 223 KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS--NRELPPR 280
K E Y +D I +T E II EGE+D S G ++ VSVPSGA ++ +R +P
Sbjct: 3 KDAELIPYNIDSILDTPECIITEGEMDAASFVTIGRRDVVSVPSGANSNLTWLDRFIP-- 60
Query: 281 EKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFS 340
H + I + D D+ G L +EL RRLG +RC V +
Sbjct: 61 -------------THFEDKKTIYIAVDEDSAGLKLRDELLRRLGTERCRIVHFGPG---- 103
Query: 341 YFKDANEVLKCLGPGALREVIENAE 365
KDANE L G +L IE AE
Sbjct: 104 -CKDANEHLAQFGAESLGICIEQAE 127
>gi|395791877|ref|ZP_10471327.1| hypothetical protein MEC_01318 [Bartonella alsatica IBS 382]
gi|395407645|gb|EJF74290.1| hypothetical protein MEC_01318 [Bartonella alsatica IBS 382]
Length = 676
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 27/126 (21%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VS+P G G ++ W N +HL+
Sbjct: 256 IVITEGEIDALSLAAYGYP-AVSLPFGG--------------GVGGKHNWIENEFDHLES 300
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
I L TD D PG A E+A RLG+ RC+RV P+ KDAN+ CL G
Sbjct: 301 FETIFLATDMDKPGEEAAHEIASRLGRHRCYRVYLPR-------KDAND---CLTAGIDA 350
Query: 359 EVIENA 364
E I+ A
Sbjct: 351 ETIKAA 356
>gi|300724256|ref|YP_003713574.1| hypothetical protein XNC1_3413 [Xenorhabdus nematophila ATCC 19061]
gi|297630791|emb|CBJ91460.1| hypothetical protein XNC1_3413 [Xenorhabdus nematophila ATCC 19061]
Length = 631
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSV--------MQRLHDQAIAFPYWHNGVLVGCKYRSME-- 216
++ AYL R IS T + + + AIAFPY NG L+ K S E
Sbjct: 122 DQCYAYLASRGISRQTAEAFEIEDANVWFPAENRTLPAIAFPYKRNGELLQVKRISTELP 181
Query: 217 ---RKFRQEKGTEKWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKV 272
+ E E L+G I N VI+ EGEID +S + G +SVP G
Sbjct: 182 NGKKVIMAESQCEPCLFGWQAIPNHVRLVILCEGEIDCMSYHQYGLP-ALSVPFGGG--- 237
Query: 273 SNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVR 332
K Q++ +LD+ I + D D G A+E+A RLG RC VR
Sbjct: 238 ---------KGAKQQWIEFEYHNLDRFEEIWISMDNDDVGQEAAKEIANRLGAHRCRLVR 288
Query: 333 WPKKDEFSYFKDA---NEVLKCLGPGAL---REVIENAELYQ 368
P KD + ++V++CL A E+ E YQ
Sbjct: 289 LPHKDINECLQAGMTQDDVIRCLETAAFFDPEELCSAREFYQ 330
>gi|395792906|ref|ZP_10472327.1| hypothetical protein MEI_00948 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432034|gb|EJF98026.1| hypothetical protein MEI_00948 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 672
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 17/99 (17%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VSVP G +G ++ W N +HL+
Sbjct: 252 IVITEGEIDALSLAAYGYP-AVSVPFGG--------------GSGGKHNWIENEFDHLES 296
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
I L TD D PG A E+A RLG+ RC+RV P+KD
Sbjct: 297 FETIFLATDMDKPGEEAAHEIASRLGRHRCYRVCLPRKD 335
>gi|159490076|ref|XP_001703015.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270922|gb|EDO96753.1| predicted protein [Chlamydomonas reinhardtii]
Length = 928
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 35/171 (20%)
Query: 196 AIAFPYWHNGVLVGCKYRSM---------ERKFRQEKGTEKWLYGLDDI---------NE 237
A+ FPY+ +G +V K R ++ FR G E YG DD+
Sbjct: 132 ALCFPYFVHGRIVNVKKRFFVPEWAQPFSKKDFRLGYGCELVAYGHDDLMRHIAAAGGGG 191
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPP---KVSNRELPPREKDTG--------- 285
V++VEGE+DKL++ G+ N VSVP+GA +N + PPR++ +
Sbjct: 192 AVTVVVVEGEMDKLALNTVGYWNVVSVPNGAALAKLNPANPDAPPRQQFSSEPDRAAAEE 251
Query: 286 ---YQYLWNCKEHLDKVSR--IILGTDADTPGHALAEELARRLGKDRCWRV 331
Y +L + L ++ +L TD DT G L EL RRLG++RCW V
Sbjct: 252 ARYYSWLESLLRLLPDPAKAVFVLATDTDTAGRGLRAELMRRLGRERCWEV 302
>gi|386742315|ref|YP_006215494.1| gp61 [Providencia stuartii MRSN 2154]
gi|384479008|gb|AFH92803.1| gp61 [Providencia stuartii MRSN 2154]
Length = 630
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRL---HDQ-----AIAFPYWHNGVLVGCKYRSMERK----- 218
YL R IS+ T + V + HD+ AIAFPY +G L+ K +ER
Sbjct: 129 YLEGRGISKATAEAFGVCDAVVWSHDENRELPAIAFPYKRDGELLQVKRIGIERPNGKKV 188
Query: 219 FRQEKGTEKWLYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
E E L+G + A V+I+ EGEID +S + G +SVP G
Sbjct: 189 IMAEANCEPCLFGWQAMPNNARVLILCEGEIDCMSYHQYGLP-ALSVPFGGG-------- 239
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
K Q++ +LD+ + I L D D G A+E+A RLG+ RC ++ PKKD
Sbjct: 240 ----KGAKQQWIEFEYHNLDRFTEIWLSLDNDEVGQIAAKEIASRLGEHRCRMLKLPKKD 295
>gi|49476113|ref|YP_034154.1| phage-like protein [Bartonella henselae str. Houston-1]
gi|49238921|emb|CAF28216.1| phage related protein [Bartonella henselae str. Houston-1]
Length = 919
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVS 300
++I EGEID LS+ G+ VSVP G V ++ ++ N +HL+
Sbjct: 498 LVITEGEIDALSLAAYGYP-AVSVPFGG--GVGGKQ----------NWIENEFDHLESFE 544
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD---------EFSYFKDANEVLKC 351
I L TD D PG A E+A RLG+ RC+RV+ P KD + + K A K
Sbjct: 545 IIFLATDMDKPGEEAAHEIANRLGRHRCYRVQLPCKDANDCLTAGIDAATIKAAFSSAKS 604
Query: 352 LGPGALR 358
P LR
Sbjct: 605 FAPKGLR 611
>gi|407894501|ref|ZP_11153531.1| hypothetical protein Dmas2_11064 [Diplorickettsia massiliensis 20B]
Length = 621
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYL-GERMISEGTLQRNSVMQRLHDQAIAFPYWHNGV 206
K + + KSL + + YL ER ++E T++ + ++ + I FPYW +
Sbjct: 107 KKFTRPNIHLKSLTKNKVDSPVKKYLIEERKLTEKTIEDFKIKEK--GRNIVFPYWRDNE 164
Query: 207 LVGCKYRSMER-----KFRQEKGTEKWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQN 260
+V KY S++R + EK E L+G I N V + EGEID +++ + G
Sbjct: 165 IVFVKYLSIDRVNGKKQISVEKDCEPCLFGWHLIPNNARSVTLCEGEIDAMTLHQYGIA- 223
Query: 261 CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELA 320
+SVP G +R L Y++ + L +I L D D G + A +L
Sbjct: 224 VLSVPFGGGTGNKHRWL-------DYEF-----DRLSVFDKIYLCFDNDEEGKSAATDLI 271
Query: 321 RRLGKDRCWRVRWPKKD 337
RLG RC V P KD
Sbjct: 272 ARLGAHRCRLVNLPHKD 288
>gi|347736360|ref|ZP_08869021.1| replication protein / DNA helicase [Azospirillum amazonense Y2]
gi|346920183|gb|EGY01393.1| replication protein / DNA helicase [Azospirillum amazonense Y2]
Length = 613
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 175 ERMISEGTLQRNSVMQRLHDQAIAFP-YWHNGVLVGCKYRSMERK------FRQEKGTEK 227
ER+IS ++ + + + I P +G L G KY ++R R E G E
Sbjct: 129 ERLISADAIRAFRIGE--QGRTIVLPSVLPDGALAGVKYLGVDRSTEGRKVIRVEGGCEP 186
Query: 228 WLYGLDDINETA--EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
L+G ++ E I EGEID ++ + G +SVP G K
Sbjct: 187 VLFGWQAVSNANLRECTITEGEIDAMTAWDYGLPTPLSVPFGGG------------KGAK 234
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
Q+L + L + I L D D+ G A A E+ARRLG+ RC RV P KD
Sbjct: 235 QQWLEAEYDRLAQFEVIYLALDCDSEGDAAAAEIARRLGEHRCRRVLLPHKD 286
>gi|262044714|ref|ZP_06017765.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037936|gb|EEW39156.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 623
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRL---HDQ-----AIAFPYWHNGVLVGCKYRSMERK----- 218
YL R I+ T + V + HD+ A+AFPY NG L+ K ER
Sbjct: 122 YLASRGITRETADQFRVSDAVVWYHDENREVAAVAFPYIRNGELLQVKRIGTERPGGKKL 181
Query: 219 FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
E E L+G ++ A V++ EGEID ++ + G + +SVP G + +
Sbjct: 182 IMAEADCEPSLFGWQAMDAKARAVVLCEGEIDCMTYSQLGI-SALSVPFGGGKGAKQQWI 240
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
Y+Y +LD+ I L D D G A+E+ARRLG+ RC V P KD
Sbjct: 241 E-------YEY-----HNLDRFDEIWLSLDNDEVGREAAKEIARRLGEHRCRLVELPHKD 288
>gi|316934314|ref|YP_004109296.1| DNA primase [Rhodopseudomonas palustris DX-1]
gi|315602028|gb|ADU44563.1| DNA primase [Rhodopseudomonas palustris DX-1]
Length = 541
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 115/272 (42%), Gaps = 44/272 (16%)
Query: 99 CPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIRKVMSSRQVAEK 158
CPKC G +L R L DG + CF CG G+ + RK E
Sbjct: 18 CPKC-GSKDNLGRYL------DGSAS---CFGSGCGHWEPPTDGTYEPRKDKPISGSKEW 67
Query: 159 SLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQA-IAFPYWHNGVLVGCKYRSMER 217
G+ A L +R ++ TL++ + D+ IA G LV K R +
Sbjct: 68 KTGV-------YAALDDRGLTRETLEKWDYQVSVEDKCHIANYKNEKGALVAQKIRRAGK 120
Query: 218 KFRQEKGTEKW-LYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRE 276
KF+ G++ LYG+ V+I EGE+D LSV +A F++ +V S
Sbjct: 121 KFQCINGSKDMPLYGMWMAGGDLSVVITEGELDALSVSQA-FKHKYAVVS---------- 169
Query: 277 LPPREKDTGYQYLWNCK---EHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
LP KD Y NC+ E LD+ +I+L D D PG AEE A L + +
Sbjct: 170 LPNGAKDAAY----NCERYYEWLDRFKKIVLMFDQDDPGRQAAEEAAAVLPVGKVFIAVL 225
Query: 334 PKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
P+ KD NEVL G AL + A+
Sbjct: 226 PR-------KDPNEVLVEDGAAALVDAFWKAK 250
>gi|300918426|ref|ZP_07135024.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300414401|gb|EFJ97711.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 623
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRL---HDQ-----AIAFPYWHNGVLVGCKYRSMERK----- 218
YL R I+ T + V + HD+ A+AFPY NG L+ K ER
Sbjct: 122 YLSSRGITRETADQFRVSDAVVWYHDENREIPAVAFPYLRNGELLQVKRIGTERPNGKKL 181
Query: 219 FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
E E L+G ++ A V++ EGEID ++ + G + +SVP G + +
Sbjct: 182 IMAEADCEPCLFGWQAMDAKARAVVLCEGEIDCMTYSQFGI-SALSVPFGGGKGAKQQWI 240
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
Y+Y +LD+ I L D D G A+E+ARRLG+ RC V P KD
Sbjct: 241 E-------YEY-----HNLDRFEEIWLSLDNDDVGREAAKEIARRLGEHRCRLVELPHKD 288
>gi|262040832|ref|ZP_06014059.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041815|gb|EEW42859.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 623
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRL---HDQ-----AIAFPYWHNGVLVGCKYRSMERK----- 218
YL R I+ T + V + HD+ A+A+PY NG L+ K S ER
Sbjct: 122 YLASRGITRETADQFRVSDAVVWYHDENREVAAVAYPYIRNGELLQVKRISTERPGGKKL 181
Query: 219 FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
E E L+G ++ A V++ EGEID ++ + G + +SVP G + +
Sbjct: 182 IMAEADCEPSLFGWQAMDAKARAVVLCEGEIDCMTYSQLGI-SALSVPFGGGKGAKQQWV 240
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
Y+Y +LD+ I L D D G A+E+ARRLG+ RC V P KD
Sbjct: 241 E-------YEY-----HNLDRFDEIWLSLDNDEVGREAAKEIARRLGEHRCRLVELPYKD 288
>gi|49474650|ref|YP_032692.1| phage related protein [Bartonella quintana str. Toulouse]
gi|49240154|emb|CAF26610.1| phage related protein [Bartonella quintana str. Toulouse]
Length = 786
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLW--NCKEHLDK 298
++I EGEID LS+ G+ VSVP G +G ++ W N +HL+
Sbjct: 366 IVITEGEIDALSLAAYGYP-AVSVPFGG--------------GSGGKHNWIENEFDHLES 410
Query: 299 VSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
I L TD D PG A +A RLG RC RVR P+KD
Sbjct: 411 FETIFLATDMDKPGEEAARAIANRLGLHRCHRVRLPRKD 449
>gi|451989254|gb|AGF91724.1| DNA primase/helicase [Synechococcus phage S-CBP4]
Length = 533
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 30/202 (14%)
Query: 173 LGERMISEGTLQRNSVMQRLHDQAIAFPYW-HNGVLVGCKYRSMERKFRQEKGTEKWLYG 231
L +R ISE Q+ + + + F Y+ +G+L+GCK ++ ++ FR E L+G
Sbjct: 70 LNKRNISEKVCQQYKIFK--DGDVLRFHYYDESGILIGCKTKTKDKDFRYEGQPATCLFG 127
Query: 232 LDDINETAE-VIIVEGEIDKLSVEEA--GFQNCVSVPSG--APPKVSNRELPPREKDTGY 286
T + V+I EGE+D S EA G+ VS+PSG A K R +P
Sbjct: 128 QHLFPATGKRVVITEGELDAASCSEAMPGWP-MVSIPSGSAAAKKSIQRAIP-------- 178
Query: 287 QYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDAN 346
W L I+L D D G EE A L +C ++ + D +KDA+
Sbjct: 179 ---W-----LQGYEEIVLFFDNDEAGRKATEEAASVLPPGKC-KIASLQGD----YKDAS 225
Query: 347 EVLKCLGPGALREVIENAELYQ 368
+ L A+RE I NA+ Y+
Sbjct: 226 DALSTNDSQAIREAIWNAKPYR 247
>gi|54298060|ref|YP_124429.1| hypothetical protein lpp2117 [Legionella pneumophila str. Paris]
gi|53751845|emb|CAH13269.1| hypothetical protein lpp2117 [Legionella pneumophila str. Paris]
Length = 610
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 162 LEPLGEK---LIAYL-GERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER 217
L PL +K +++YL ER ++ T++ + + + I FPYW +G L+ K +ER
Sbjct: 115 LSPLLQKTSPIMSYLINERRLTAETIEAYKIGSQ--NSKIIFPYWRDGELIFVKQLDLER 172
Query: 218 -----KFRQEKGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPK 271
+ E E L+G I A +V I EGEID +S+ + GF +SVP G
Sbjct: 173 VNGKKQIAVEPNCEPCLFGWHLIPANARKVTICEGEIDAMSLYQYGFP-ALSVPFGGGGG 231
Query: 272 VSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRV 331
++K Y++ E L I L D D G EL RLG+ RC V
Sbjct: 232 -------NKQKWLEYEF-----ERLAVFDEIYLCFDNDKEGDIATLELVERLGRHRCRIV 279
Query: 332 RWPKKDEFSYFKDANEVLKCLGPGALREVI 361
+ P KDANE CL +EVI
Sbjct: 280 KLP-------CKDANE---CLQAKITQEVI 299
>gi|18640487|ref|NP_570328.1| RP primase/helicase [Synechococcus phage P60]
gi|18478717|gb|AAL73266.1| primase/helicase [Synechococcus phage P60]
Length = 531
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 27/196 (13%)
Query: 176 RMISEGTLQRNSVMQRLHDQAIAFPYWHNG-VLVGCKYRSMERKFR-QEKGTEKWLYGLD 233
R ++E T ++ +V R++D I FPY+ N LVG K+R E+ FR Q K + L+G
Sbjct: 68 RNLTEETCRKFNV--RVNDGRIQFPYYDNSRQLVGYKHRGKEKDFRWQGKNPDNQLFGQQ 125
Query: 234 DINETAEVIIVEGEIDKLSVEEAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQYLWN 291
+ +++ EGE D LSV +A +N VSVP+GA + + + L + YL N
Sbjct: 126 LWGKGKAIVVTEGEFDALSVFQAR-KNWPVVSVPNGA--QSAKKALAAQ-----LTYLLN 177
Query: 292 CKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
+E IIL D D G AEE DR + +KDA+E +
Sbjct: 178 FEE-------IILMFDNDDAGIQAAEECVSLFPADRVFTAF------IDGYKDASEAVSA 224
Query: 352 LGPGALREVIENAELY 367
A+ + I N Y
Sbjct: 225 KDYDAVTQAIWNKSTY 240
>gi|381167564|ref|ZP_09876771.1| Phage related helicase [Phaeospirillum molischianum DSM 120]
gi|380683318|emb|CCG41583.1| Phage related helicase [Phaeospirillum molischianum DSM 120]
Length = 611
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 169 LIAYL-GERMISEGTLQRNSVMQRLHDQAIAFP-YWHNGVLVGCKYRSMERK------FR 220
++AYL GER +SE ++ V + + I FP +G L K+ ++R R
Sbjct: 122 VLAYLTGERGLSEDAVRAYRVGE--QGRTIVFPSLLPDGTLAFVKFLGIDRSPEGKKITR 179
Query: 221 QEKGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPP 279
E G E L+G I+ A E++I EGEID L+ + G +SVP G
Sbjct: 180 VEAGCEPVLFGWQAIDRNAREIVITEGEIDALTAWDFGIP-ALSVPFGG----------- 227
Query: 280 REKDTGYQYLW--NCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
G + W + E L + I L D D G A E+A RLG+ RC RV P+KD
Sbjct: 228 ---GIGAKQAWIESEFERLGQFEVIYLALDNDREGELAAGEIANRLGRHRCRRVILPRKD 284
>gi|422321729|ref|ZP_16402774.1| hypothetical protein HMPREF0005_02002 [Achromobacter xylosoxidans
C54]
gi|317403363|gb|EFV83876.1| hypothetical protein HMPREF0005_02002 [Achromobacter xylosoxidans
C54]
Length = 605
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 25/154 (16%)
Query: 199 FPYWHNGVLVGCKYRSMERK--FRQEKGTEKWLYGLDDINETAEVI-IVEGEIDKLSVEE 255
FPY +G LV K R+ + K Q G E L+G I+ A ++ I EGEID ++ +
Sbjct: 167 FPYLRDGELVNTKSRNPDEKKDMLQAAGAEPCLFGWHLIDPNARMVAIFEGEIDAMTGHQ 226
Query: 256 AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
G + +SV +GA +Q++ + E L + S I+L D D GH
Sbjct: 227 VGIPS-LSVNAGA---------------GNHQWIESDWERLQQFSDIVLCYDNDDAGHKG 270
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVL 349
E+A RLG +RC + F KDANE L
Sbjct: 271 VREVATRLGLERC------RIATFGKAKDANEYL 298
>gi|302832832|ref|XP_002947980.1| hypothetical protein VOLCADRAFT_88130 [Volvox carteri f.
nagariensis]
gi|300266782|gb|EFJ50968.1| hypothetical protein VOLCADRAFT_88130 [Volvox carteri f.
nagariensis]
Length = 1522
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 45 GNPSLQCNSDAESFGEHKDDTIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKG 104
GNP+ D ++ E + S L+E++ +L G++ + +PG + LCP C G
Sbjct: 273 GNPA----GDGHNYQEQQQQRRQTSLLSELRSQLADRGVDLPEDVLPGEWHRGLCPFCGG 328
Query: 105 GGRSLERSLSVHIIQDGDFAMWRCFRVD-CGWAGRAFAGSNKIRKVMSSRQVAE-----K 158
S ++ + +D F +RC+R + CG +A S +R+ + R V + +
Sbjct: 329 DEGREPLSFNLIVSEDAHFVYYRCWRSNKCGVEETVWAES--VRRGLQRRDVRQAAPKPQ 386
Query: 159 SLGL-----EPLGEKLIAYLGERMISEGTLQRNSVMQ-----------RLHDQAIAFPYW 202
LG+ E L E +AY R I TL+ V Q L ++ + +PY+
Sbjct: 387 DLGVDEGKREELDEDALAYFAARGIRPETLRVAGVFQTRRVPHPLQPGTLLERVVVYPYY 446
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI 235
+GVL+ G E+ L+GLD +
Sbjct: 447 KDGVLL--------------PGAERVLWGLDQV 465
>gi|317491569|ref|ZP_07950005.1| hypothetical protein HMPREF0864_00768 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316921116|gb|EFV42439.1| hypothetical protein HMPREF0864_00768 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 626
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 170 IAYLGERMISEGTLQRNSVMQRL---HDQ-----AIAFPYWHNGVLVGCKYRSMERK--- 218
AYL R IS T + V + HD+ AIAFPY + L+ K S ER
Sbjct: 125 FAYLETRGISRETAEAYKVSSAVVWSHDEQRELPAIAFPYKRDDQLLQVKRISTERPNGK 184
Query: 219 --FRQEKGTEKWLYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPSGAPPKVSNR 275
E E L+G + + ++++ EGEID +S + G +SVP G
Sbjct: 185 KVIMAEGDCEPCLFGWQAMPKNIRIVVLCEGEIDCMSYHQYGLP-ALSVPFGGG------ 237
Query: 276 ELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPK 335
K Q++ +LD+ I + D D G A A+E+A RLG+ RC V+ P
Sbjct: 238 ------KGAKQQWIEFEYHNLDRFDEIWISMDGDEVGQAAAKEIASRLGEHRCRLVKLPH 291
Query: 336 KDEFSYFKDANEVLKC-LGPGALREVIENAELY---QLHVSEEALQCT 379
KD NE L+ + + ++E AE + +L+ + E Q T
Sbjct: 292 -------KDINECLQAGISSDEIIGLLEKAEYFDPEELYSAREFYQET 332
>gi|317474283|ref|ZP_07933559.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
1_2_48FAA]
gi|316909593|gb|EFV31271.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
1_2_48FAA]
Length = 659
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 42/236 (17%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMIS--EGTLQRNSVMQRLHDQAIAFPYWHNG 205
++ + R +A++ + L+ + L R +G ++N+ H IA+ + NG
Sbjct: 135 QLAARRYLADQGISLKTAVSAHLGCLTHRCFGGKDGKDEKNAAGTMYH--CIAYVNYVNG 192
Query: 206 VLVGCKYRSME-------RKFRQEKGTEKWL-YGLDDIN-------ETAEVIIVEGEIDK 250
V KYRS + + + Q+ T Y +D IN A +I+ EG D
Sbjct: 193 QPVNVKYRSCDPSSSGYTKCWSQDSPTTPCPPYNIDCINPLRISEESVARLIVTEGGRDV 252
Query: 251 LSVEEAGFQNCVSVPSGAPPKV--SNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDA 308
L++ EAG+ +SVP+GA + S P W LD+V +++ D
Sbjct: 253 LTLYEAGYPYVISVPNGAASDLRKSFEAFVP----------W-----LDQVRELVICGDC 297
Query: 309 DTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
D PG L + LA G RC P KD ++VL G G +RE+I++A
Sbjct: 298 DLPGRTLVKHLADYFGS-RCLFTTLPGG-----CKDISDVLVAYGSGVVREIIDSA 347
>gi|218130758|ref|ZP_03459562.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697]
gi|217987102|gb|EEC53433.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697]
Length = 659
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 42/236 (17%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMIS--EGTLQRNSVMQRLHDQAIAFPYWHNG 205
++ + R +A++ + L+ + L R +G ++N+ H IA+ + NG
Sbjct: 135 QLAARRYLADQGISLKTAVSAHLGCLTHRCFGGKDGKDEKNAAGTMYH--CIAYVNYVNG 192
Query: 206 VLVGCKYRSME-------RKFRQEKGTEKWL-YGLDDIN-------ETAEVIIVEGEIDK 250
V KYRS + + + Q+ T Y +D IN A +I+ EG D
Sbjct: 193 QPVNVKYRSCDPSSSGYTKCWSQDSPTTPCPPYNIDCINPLRISEESVARLIVTEGGRDV 252
Query: 251 LSVEEAGFQNCVSVPSGAPPKV--SNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDA 308
L++ EAG+ +SVP+GA + S P W LD+V +++ D
Sbjct: 253 LTLYEAGYPYVISVPNGAASDLRKSFEAFVP----------W-----LDQVRELVICGDC 297
Query: 309 DTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
D PG L + LA G RC P KD ++VL G G +RE+I++A
Sbjct: 298 DLPGRTLVKHLADYFGS-RCLFTTLPGG-----CKDISDVLVAYGSGVVREIIDSA 347
>gi|167763642|ref|ZP_02435769.1| hypothetical protein BACSTE_02017 [Bacteroides stercoris ATCC
43183]
gi|167698936|gb|EDS15515.1| toprim domain protein [Bacteroides stercoris ATCC 43183]
Length = 659
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 195 QAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEKWL----------YGLDDIN-------E 237
Q IA+ + NG V KYRS + T+ W Y +D IN
Sbjct: 185 QCIAYVNYINGQPVNVKYRSCDAT--ASGYTKCWSQDSPTIPCPPYNIDCINPLLIAEEN 242
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLD 297
+I+ EGE D L++ EAG+ +SVP+GA +S G++ + LD
Sbjct: 243 IPRLIVTEGERDVLTLREAGYPYVISVPNGAASDLSK----------GFEAF---RPWLD 289
Query: 298 KVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGAL 357
+V +++ D+D PG L + LA G RC P KD ++VL G +
Sbjct: 290 RVQELVICGDSDLPGRTLVKHLADYFGT-RCLFTVLPGG-----CKDISDVLVAYGADVV 343
Query: 358 REVIENA 364
RE+I +A
Sbjct: 344 REIIGSA 350
>gi|217978903|ref|YP_002363050.1| hypothetical protein Msil_2768 [Methylocella silvestris BL2]
gi|217504279|gb|ACK51688.1| hypothetical protein Msil_2768 [Methylocella silvestris BL2]
Length = 531
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 15/164 (9%)
Query: 209 GCKYRSM-ERKFRQEKGTEKWLYGLDDINETA--EVIIVEGEIDKLSVEEAGFQN--CVS 263
G K R++ ++ F KG + + +D + A + + EGE D L++ EAG +S
Sbjct: 101 GWKARAIPDKAFVAGKGFKLSFWNIDRVLAAAPSRIYLTEGEFDALALVEAGVSADAVLS 160
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCK-EHLDKVSRIILGTDADTPGHALAEELARR 322
VP+GA + ++ P +K GY+++ L + + D D PG +L ++ +
Sbjct: 161 VPNGAKERAAD--APAEQK--GYEFVDEALLAGLSGTKQFVWCGDGDGPGLSLRADMVKL 216
Query: 323 LGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAEL 366
LG R V WP KDAN++L GP ALR ++EN L
Sbjct: 217 LGAARFHFVDWPDG-----CKDANDLLVTDGPEALRALVENGAL 255
>gi|145527666|ref|XP_001449633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417221|emb|CAK82236.1| unnamed protein product [Paramecium tetraurelia]
Length = 992
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 165 LGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKG 224
L +K L E+++SE T Q ++ +L +Q F Y LV CK R+ + + +
Sbjct: 239 LKQKKDDVLAEKVLSEETKQ--NIRSQLDNQFDNFQYE----LVSCKIRAAGKDLKHIQK 292
Query: 225 TE-----KWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
E K ++G+ + ++ +VI+ EGE D ++ + +S+P G +P
Sbjct: 293 IEPMNAAKGIFGMHLLKQDSTQVILTEGEFDAMAAYQMTNIPAISLPYGI------NHIP 346
Query: 279 PREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
YL + +K++ II+ D D PG ++++AR+LG R V+ +
Sbjct: 347 A--------YLIEWLDQFEKLNDIIIWVDDDNPGRINSQKIARKLGNARTRVVQPSLINP 398
Query: 339 FSYFKDANEVLKCLGPGAL 357
Y KDAN+ L+ +
Sbjct: 399 HDYPKDANDCLRFYADKVM 417
>gi|424836483|ref|ZP_18261130.1| TOPRIM domain protein [Clostridium sporogenes PA 3679]
gi|365977009|gb|EHN13113.1| TOPRIM domain protein [Clostridium sporogenes PA 3679]
Length = 609
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 151 SSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHN-GVLVG 209
S R+ +K+ + ++ YL R IS+ T + V + HD I F Y + G +
Sbjct: 102 SERRAIKKATEYKQNINAILPYLELRKISKDTAKY--VGLKAHDNNIVFEYKNELGEHIA 159
Query: 210 CKYRSMERKFRQEKGTEKW---------LYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
KYR + KG + W L+ +D ++ T ++I EGE+D L++ E+G +N
Sbjct: 160 NKYR---KAGNATKGCKMWFEAGTNINTLFNMDKVDMTKPLVITEGELDCLALIESGHKN 216
Query: 261 CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELA 320
VSVP+GA Y+++ L++ +IL D D G +A
Sbjct: 217 SVSVPTGA---------------NSYEWVEVNYSWLEQFKEVILWFDNDKAGIEGMSVIA 261
Query: 321 RRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
R+ D V K KD NE+L G + + ++ A+
Sbjct: 262 PRIPADIVKTVNSNKA------KDINEILYKFGKQTVLKELKKAK 300
>gi|386065838|ref|YP_005981142.1| hypothetical protein NCGM2_2906 [Pseudomonas aeruginosa NCGM2.S1]
gi|348034397|dbj|BAK89757.1| hypothetical protein NCGM2_2906 [Pseudomonas aeruginosa NCGM2.S1]
Length = 609
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 169 LIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER-----KFRQEK 223
++AYL R + T+ + ++ D I FP+ +G L+ K ++R K K
Sbjct: 123 VMAYLAGRGLKPETIAAFKIGEKGRD--IVFPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 224 GTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
+E L+G I E A EV I EGEID ++ + G + +SVP G
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGG-------------- 225
Query: 283 DTGYQYLWNCKEH--LDKVSRIILGTDADTPGHALAEELARRLGKDRC 328
G + W E+ L + I L D D G EEL +RLG++RC
Sbjct: 226 GKGEKQAWIEHEYSRLSRFDVIYLAMDNDEAGKQATEELIKRLGRERC 273
>gi|218891257|ref|YP_002440123.1| hypothetical protein PLES_25231 [Pseudomonas aeruginosa LESB58]
gi|218771482|emb|CAW27249.1| hypothetical protein PLES_25231 [Pseudomonas aeruginosa LESB58]
Length = 609
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 169 LIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER-----KFRQEK 223
++AYL R + T+ + ++ D I FP+ +G L+ K ++R K K
Sbjct: 123 VMAYLAGRGLKPETIAAFKIGEKGRD--IVFPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 224 GTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
+E L+G I E A EV I EGEID ++ + G + +SVP G
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGG-------------- 225
Query: 283 DTGYQYLWNCKEH--LDKVSRIILGTDADTPGHALAEELARRLGKDRC 328
G + W E+ L + I L D D G EEL +RLG++RC
Sbjct: 226 GKGEKQAWIEHEYSRLSRFDVIYLAMDNDEAGKQATEELIKRLGRERC 273
>gi|121602385|ref|YP_988524.1| putative DNA primase/helicase [Bartonella bacilliformis KC583]
gi|421760337|ref|ZP_16197156.1| putative DNA primase/helicase [Bartonella bacilliformis INS]
gi|120614562|gb|ABM45163.1| putative DNA primase/helicase [Bartonella bacilliformis KC583]
gi|411176054|gb|EKS46075.1| putative DNA primase/helicase [Bartonella bacilliformis INS]
Length = 788
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 234 DINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCK 293
+ + +++I EGEID LS+ G+ +S+P G G ++ W +
Sbjct: 370 NAKQARDLVITEGEIDALSLAAYGYP-ALSLPFGG--------------GKGGKHAWIEQ 414
Query: 294 E--HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
E HL+ +I L TD D PG A +A RLG+ RC+RV P +KDAN+ L
Sbjct: 415 EFDHLEIFEKIYLATDMDPPGEEAALAIANRLGRHRCYRVCLP-------YKDANDCLTA 467
>gi|421161235|ref|ZP_15620196.1| hypothetical protein PABE173_3776 [Pseudomonas aeruginosa ATCC
25324]
gi|404540402|gb|EKA49812.1| hypothetical protein PABE173_3776 [Pseudomonas aeruginosa ATCC
25324]
Length = 609
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 169 LIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER-----KFRQEK 223
++AYL R + T+ + ++ D I FP+ +G L+ K ++R K K
Sbjct: 123 VMAYLAGRGLKPETIAAFKIGEKGRD--IVFPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 224 GTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
+E L+G I E A EV I EGEID ++ + G + +SVP G
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGG-------------- 225
Query: 283 DTGYQYLWNCKEH--LDKVSRIILGTDADTPGHALAEELARRLGKDRC 328
G + W E+ L + I L D D G EEL +RLG++RC
Sbjct: 226 GKGEKQAWIEHEYSRLSRFDVIYLAMDNDEAGKQATEELIKRLGRERC 273
>gi|449019985|dbj|BAM83387.1| mitochondrial DNA helicase Twinkle [Cyanidioschyzon merolae strain
10D]
Length = 822
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 211 KYRSMERK--FRQEKGTEKW-LYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPS 266
K RS+ RK R E W L+G+ + AE ++V EGE D ++V ++ + VS+P+
Sbjct: 404 KIRSVLRKSAMRLEPRGGYWGLFGMHLVPADAECLVVTEGEFDAMAVHQSTGLSAVSLPN 463
Query: 267 GAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKD 326
GA R LPP W L++ RI L D D PGH A + A +LG
Sbjct: 464 GA------RSLPP------ALLTW-----LERFKRIYLWLDDDIPGHDGARQFAHKLGLQ 506
Query: 327 RCWRVRWPKKDEFSYFKDANEVL 349
RC+ V S KDANE L
Sbjct: 507 RCFLV---GSGNGSGPKDANEAL 526
>gi|194738223|ref|YP_002113588.1| gp61 [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
gi|194713725|gb|ACF92946.1| gp61 [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
Length = 610
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 167 EKLIAYLGERMISEGTLQRNSVMQ------RLHDQAIAFPYWHNGVLVGCKYRSMERK-- 218
E + YL R IS +R V+ A+ FPY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEVAKRYEVVSGKVWNGERELSALVFPYKRDGELLQVKRISTERPDG 165
Query: 219 ---FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSN 274
E E L+G ++ V++ EGEID +S + G Q +SVP G
Sbjct: 166 KKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIQ-ALSVPFGGG----- 219
Query: 275 RELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
K Q++ +LD+ I + D D G A E+A RLG+ RC V P
Sbjct: 220 -------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP 272
Query: 335 KKD 337
KD
Sbjct: 273 HKD 275
>gi|145497867|ref|XP_001434922.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402050|emb|CAK67525.1| unnamed protein product [Paramecium tetraurelia]
Length = 990
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 165 LGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKG 224
L +K L E+++SE T Q ++ +L +Q Y LV CK R+ + + +
Sbjct: 237 LKQKKDEVLAEQVMSEETKQ--NIKSQLDNQFDNLQYE----LVSCKIRAAGKDLKHIQK 290
Query: 225 TE-----KWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELP 278
E K ++G+ + ++ +VI+ EGE D ++ + +S+P G +P
Sbjct: 291 IEPMNAAKGIFGMHLLKQDSTQVILTEGEFDAMAAYQMTNIPAISLPYGI------NHIP 344
Query: 279 PREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
YL + +K++ II+ D D PG ++++AR+LG R V+ D
Sbjct: 345 A--------YLIEWLDQFEKLNDIIIWVDDDNPGRINSQKIARKLGNARTRVVQPSLLDP 396
Query: 339 FSYFKDANEVLK 350
Y KDAN+ L+
Sbjct: 397 HDYPKDANDCLR 408
>gi|329963105|ref|ZP_08300885.1| conserved domain protein [Bacteroides fluxus YIT 12057]
gi|328529146|gb|EGF56076.1| conserved domain protein [Bacteroides fluxus YIT 12057]
Length = 656
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 47/244 (19%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVL 207
++ + R ++++S+ LE + + L R +G + S+ H IA+ + NG
Sbjct: 126 QLAARRYLSDQSISLESAIKMHVGCLTHRCFGKGEEDKKSMGNLYH--CIAYVNYVNGQP 183
Query: 208 VGCKYRSME---------RKFRQEKGTEKWL----------YGLDDIN-------ETAEV 241
V KYRS + + + T+ W + +D +N ++
Sbjct: 184 VNVKYRSCDPTSTAKADSNDVQSVEYTKFWYQDSPTTPCAPFNIDCLNPLLVAEENIRKL 243
Query: 242 IIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSR 301
II EG D L++ +AG+ +SVP+GA +S + E W L++V
Sbjct: 244 IITEGGKDVLTISQAGYPFVISVPNGAASDLS-KSFEAFEP-------W-----LEQVQD 290
Query: 302 IILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVI 361
I++ D D PG L + L G +RC P KD ++VL G + E+I
Sbjct: 291 IVICGDTDLPGRTLTKHLTDYFG-NRCLLTTLPGD-----CKDISDVLTKYGVEIVHEII 344
Query: 362 ENAE 365
E+A+
Sbjct: 345 ESAK 348
>gi|451988633|gb|AGF91110.1| primase/helicase [Synechococcus phage S-CBP2]
Length = 528
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 176 RMISEGTLQRNSVMQRLHDQAIA-FPYW-HNGVLVGCKYRSMERKFR-QEKGTEKWLYGL 232
R I+E T ++ +V R+ + + FPY +G +VG K R E+ FR K EK L+G
Sbjct: 67 RRITEATCKKFNV--RVDEGPVLRFPYTDQSGRVVGAKERDKEKNFRWIGKNVEKRLFGQ 124
Query: 233 DDINETAEVIIVEGEIDKLSVEEAGFQ-NCVSVPSGAPPKVSNRELPPREKDTGYQYLWN 291
+ ++I EGE+D LSV EA + VS+ SGA Y+ L N
Sbjct: 125 NLFGGGKRLVITEGEMDALSVWEAQPKWPVVSIYSGAA--------------GAYKDLQN 170
Query: 292 CKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
I+L D D PG + + A+ D+ K +KDA+E L+
Sbjct: 171 QLSFCLSFDEIVLLFDNDEPGQEASVKCAQLFPPDKV------KIGSMGAYKDASEALQA 224
Query: 352 LGPGALREVIENAELY 367
A+R+ I NA Y
Sbjct: 225 GDGEAIRQAIWNAAPY 240
>gi|189466689|ref|ZP_03015474.1| hypothetical protein BACINT_03064 [Bacteroides intestinalis DSM
17393]
gi|189434953|gb|EDV03938.1| hypothetical protein BACINT_03064 [Bacteroides intestinalis DSM
17393]
Length = 673
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 52/253 (20%)
Query: 143 SNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYW 202
+N ++ + R +A++ + LE E I L R + ++ + Q IA+ +
Sbjct: 135 TNDQDQLAARRYLADQGISLEKAIEAHIGCLTHRCYGKDDEKKATGTQY---HCIAYVNY 191
Query: 203 HNGVLVGCKYRSMERKFRQEK------GTEKWL-----------------YGLDDIN--- 236
NG V KYRS + + GTE + Y +D IN
Sbjct: 192 VNGQPVNAKYRSCDPSTIKTTSDGNAVGTENPVCYTKFWSQDSPTTPCAPYNIDCINPLR 251
Query: 237 ----ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNC 292
+I+ EGE D L++ E G+ +SVP+GA ++ + E W
Sbjct: 252 VSEEHIPRLIVTEGEKDVLTLLETGYPYAISVPNGAASDLA-KTFEAFEP-------W-- 301
Query: 293 KEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCL 352
LD+V I++ D D PG L + L G R P KD ++VL
Sbjct: 302 ---LDQVRDIVICGDRDLPGRTLIKHLTDYFGA-RSLLTTLPGD-----CKDISDVLATY 352
Query: 353 GPGALREVIENAE 365
G +RE+IE+AE
Sbjct: 353 GSNVVREIIESAE 365
>gi|386623412|ref|YP_006143140.1| gp61 [Escherichia coli O7:K1 str. CE10]
gi|349737149|gb|AEQ11855.1| gp61 [Escherichia coli O7:K1 str. CE10]
Length = 610
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINE-TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ EV++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWQALDAGVREVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|313111265|ref|ZP_07797083.1| hypothetical protein PA39016_003090035 [Pseudomonas aeruginosa
39016]
gi|310883585|gb|EFQ42179.1| hypothetical protein PA39016_003090035 [Pseudomonas aeruginosa
39016]
Length = 609
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 169 LIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMER-----KFRQEK 223
++AYL R + T+ + + D I FPY +G L+ K ++R +
Sbjct: 123 VMAYLVGRGLKPETIAEFKIGESGRD--IVFPYLRDGALIFWKKLGVDRPNGKKRISASA 180
Query: 224 GTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
E L+G I + A EV I EGEID ++ + G + +SVP G
Sbjct: 181 DAEPCLFGWQAIPDGAREVTITEGEIDAMTAWQYG-RPALSVPFGG-------------- 225
Query: 283 DTGYQYLWNCKEH--LDKVSRIILGTDADTPGHALAEELARRLGKDRC 328
G + W E+ L + I L D D PG EE+ +RLG++RC
Sbjct: 226 GKGEKQAWIEHEYSRLSRFDVIYLAMDDDEPGKQATEEIIKRLGRERC 273
>gi|423224621|ref|ZP_17211089.1| hypothetical protein HMPREF1062_03275 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392635061|gb|EIY28967.1| hypothetical protein HMPREF1062_03275 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 656
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 52/247 (21%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVL 207
++ + R +A++ + L+ E I L R + +N+ +H +A+ + NG
Sbjct: 123 QLTARRYLADQGISLKTAIEARIGCLTHRCFGKDEDSKNT--GTMH-HCVAYVNYLNGQP 179
Query: 208 VGCKYRSMERKF------RQEKGTEK-------WL----------YGLDDIN-------E 237
V KYRS + R+ G EK W Y +D IN
Sbjct: 180 VNAKYRSCDPSTVKPTDERETTGMEKAAGYTKFWSQDSPTTPCPPYHIDCINPLKVSEAT 239
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLD 297
+II EGE D L++ EAG+ +SVP+GA +S + E W ++
Sbjct: 240 IPRLIITEGEKDVLTLNEAGYPYAISVPNGAASDLS-KSFEAFEP-------W-----ME 286
Query: 298 KVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGAL 357
+V I++ D+D PG L + L+ G RC P KD ++VL G +
Sbjct: 287 QVRDIVICGDSDLPGRTLIKHLSDYFGA-RCLLTTLPGD-----CKDISDVLATYGIEVV 340
Query: 358 REVIENA 364
E+IE A
Sbjct: 341 CEIIEAA 347
>gi|224540163|ref|ZP_03680702.1| hypothetical protein BACCELL_05076 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518197|gb|EEF87302.1| hypothetical protein BACCELL_05076 [Bacteroides cellulosilyticus
DSM 14838]
Length = 656
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 52/247 (21%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVL 207
++ + R +A++ + L+ E I L R + +N+ +H +A+ + NG
Sbjct: 123 QLTARRYLADQGISLKTAIEARIGCLTHRCFGKDEDSKNT--GTMH-HCVAYVNYLNGQP 179
Query: 208 VGCKYRSMERKF------RQEKGTEK-------WL----------YGLDDIN-------E 237
V KYRS + R+ G EK W Y +D IN
Sbjct: 180 VNAKYRSCDPSTVKPTDERETTGMEKAAGYTKFWSQDSPTTPCPPYHIDCINPLKVSEAT 239
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLD 297
+II EGE D L++ EAG+ +SVP+GA +S + E W ++
Sbjct: 240 IPRLIITEGEKDVLTLNEAGYPYAISVPNGAASDLS-KSFEAFEP-------W-----ME 286
Query: 298 KVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGAL 357
+V I++ D+D PG L + L G RC P KD ++VL G +
Sbjct: 287 QVRDIVICGDSDLPGRTLVKHLTDYFGA-RCLLTTLPGD-----CKDISDVLATYGIEVV 340
Query: 358 REVIENA 364
E+IE A
Sbjct: 341 CEIIEAA 347
>gi|212694044|ref|ZP_03302172.1| hypothetical protein BACDOR_03570 [Bacteroides dorei DSM 17855]
gi|345514899|ref|ZP_08794405.1| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
gi|212663576|gb|EEB24150.1| toprim domain protein [Bacteroides dorei DSM 17855]
gi|345455804|gb|EEO44743.2| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
Length = 668
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 65/142 (45%), Gaps = 26/142 (18%)
Query: 230 YGLDDIN-------ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
Y +D IN +IIVEGE D L + EAG+++ +SVPSGA ++ E
Sbjct: 254 YNIDCINPLLVEEETIPRLIIVEGEKDALVLMEAGYRHVISVPSGAASDLAKS----FEA 309
Query: 283 DTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF 342
T + LD+V I++ D D PG L + L+ G RC P
Sbjct: 310 FTSW---------LDQVQDIVICGDTDLPGRTLVKHLSDYFGA-RCLFTTLPGG-----C 354
Query: 343 KDANEVLKCLGPGALREVIENA 364
KD +V+ G ++ VIE+A
Sbjct: 355 KDIGDVMNLYGTEVVQSVIEDA 376
>gi|427386673|ref|ZP_18882870.1| hypothetical protein HMPREF9447_03903 [Bacteroides oleiciplenus YIT
12058]
gi|425726163|gb|EKU89029.1| hypothetical protein HMPREF9447_03903 [Bacteroides oleiciplenus YIT
12058]
Length = 677
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 102/253 (40%), Gaps = 52/253 (20%)
Query: 143 SNKIRKVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYW 202
+N ++ + R +A++ + LE E I L R + ++ + Q IA+ +
Sbjct: 134 TNDQDQLAARRYLADQGISLEKAIEAHIGCLTHRCYGKDDEKKATGTQY---HCIAYVNY 190
Query: 203 HNGVLVGCKYRSMERKFRQEK------GTEKWL-----------------YGLDDIN--- 236
NG V KYRS + + GTE + Y +D IN
Sbjct: 191 VNGQPVNAKYRSCDPSTVKTTSDGNAIGTENPVCYTKFWSQDSPTTPCAPYNIDCINPLR 250
Query: 237 ----ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNC 292
+I+ EGE D L++ E G+ +SVP+GA ++ + E W
Sbjct: 251 VSEEHIPRLIVTEGEKDVLTLLETGYPYAISVPNGAASDLA-KTFEAFEP-------W-- 300
Query: 293 KEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCL 352
LD+V I++ D D PG L + L G R P KD ++VL
Sbjct: 301 ---LDQVRDIVICGDRDLPGRTLIKHLTDYFGA-RGLLTTLPGD-----CKDISDVLATY 351
Query: 353 GPGALREVIENAE 365
G +RE+IE+AE
Sbjct: 352 GSNVVREIIESAE 364
>gi|419049965|ref|ZP_13596875.1| putative replication protein P [Escherichia coli DEC3B]
gi|377900239|gb|EHU64574.1| putative replication protein P [Escherichia coli DEC3B]
Length = 887
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 41 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 99
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 100 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 154
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 155 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 206
Query: 334 PKKD 337
P KD
Sbjct: 207 PYKD 210
>gi|423228471|ref|ZP_17214877.1| hypothetical protein HMPREF1063_00697 [Bacteroides dorei
CL02T00C15]
gi|423243734|ref|ZP_17224810.1| hypothetical protein HMPREF1064_01016 [Bacteroides dorei
CL02T12C06]
gi|392636217|gb|EIY30101.1| hypothetical protein HMPREF1063_00697 [Bacteroides dorei
CL02T00C15]
gi|392644624|gb|EIY38362.1| hypothetical protein HMPREF1064_01016 [Bacteroides dorei
CL02T12C06]
Length = 635
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 34/146 (23%)
Query: 230 YGLDDINE-------TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
Y +D IN +IIVEG D L++ EAG+++ +SVPSGA
Sbjct: 224 YNIDCINPLLVEEEIIPRLIIVEGGKDALTLMEAGYRHVISVPSGAASD----------- 272
Query: 283 DTGYQYLWNCKEH----LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
L C E LD+V I++ D+D PG L + L+ G RC P
Sbjct: 273 ------LAKCFEAFIPWLDQVQDIVICGDSDLPGRILVKHLSDYFGA-RCLFTILPGG-- 323
Query: 339 FSYFKDANEVLKCLGPGALREVIENA 364
KD +V+K G +R VI++A
Sbjct: 324 ---CKDIGDVMKLYGTEVVRNVIDDA 346
>gi|424526998|ref|ZP_17970725.1| putative replication protein P [Escherichia coli EC4421]
gi|424533151|ref|ZP_17976512.1| putative replication protein P [Escherichia coli EC4422]
gi|425168992|ref|ZP_18567480.1| putative replication protein P [Escherichia coli FDA507]
gi|428996727|ref|ZP_19065342.1| AAA domain protein [Escherichia coli 94.0618]
gi|390850528|gb|EIP13896.1| putative replication protein P [Escherichia coli EC4421]
gi|390861259|gb|EIP23528.1| putative replication protein P [Escherichia coli EC4422]
gi|408082888|gb|EKH16838.1| putative replication protein P [Escherichia coli FDA507]
gi|427245964|gb|EKW13229.1| AAA domain protein [Escherichia coli 94.0618]
Length = 903
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 57 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 115
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 116 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 170
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 171 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 222
Query: 334 PKKD 337
P KD
Sbjct: 223 PYKD 226
>gi|269122498|ref|YP_003310675.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
gi|268616376|gb|ACZ10744.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
Length = 607
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 165 LGEKLIAYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERK-FRQEK 223
+ +K +L R IS T V R D + F Y + ++ KYR + +K FR K
Sbjct: 106 ISKKQAEFLENRGISWETAAEMDVWVRRSDGWLTFIYRNKKRVLAVKYRDINKKDFRLTK 165
Query: 224 GTE-KWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQN-CVSVPSGAPPKVSNRELPPR 280
+ L+ + + T E VII EGE+D L+ E G ++ VSVP+G
Sbjct: 166 SEDINPLFNIHRV--TGESVIICEGEMDVLACAEVGMKDKAVSVPNGT------------ 211
Query: 281 EKDTGY-QYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEF 339
+ G+ +Y W + L+ IIL D DT G +E+ +RL +C + +
Sbjct: 212 -NNLGWIEYNW---DFLESKKEIILAFDNDTAGEKAIKEVLKRLDITKCRYLDMKGE--- 264
Query: 340 SYFKDANEVLKCLGPGALREVIEN 363
KD N++L LG L ++ N
Sbjct: 265 ---KDLNDILINLGKVELLNILNN 285
>gi|420344960|ref|ZP_14846408.1| putative replication protein P [Shigella boydii 965-58]
gi|391277769|gb|EIQ36499.1| putative replication protein P [Shigella boydii 965-58]
Length = 968
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|419043141|ref|ZP_13590120.1| putative replication protein P [Escherichia coli DEC3A]
gi|419061530|ref|ZP_13608299.1| putative replication protein P [Escherichia coli DEC3D]
gi|419298444|ref|ZP_13840467.1| putative replication protein P [Escherichia coli DEC11C]
gi|377901378|gb|EHU65697.1| putative replication protein P [Escherichia coli DEC3A]
gi|377916111|gb|EHU80205.1| putative replication protein P [Escherichia coli DEC3D]
gi|378157382|gb|EHX18416.1| putative replication protein P [Escherichia coli DEC11C]
Length = 903
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 57 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 115
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 116 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 170
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 171 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 222
Query: 334 PKKD 337
P KD
Sbjct: 223 PYKD 226
>gi|417754549|ref|ZP_12402644.1| DNA replication protein [Escherichia coli DEC2B]
gi|419000946|ref|ZP_13548502.1| DNA replication protein [Escherichia coli DEC1B]
gi|419006467|ref|ZP_13553921.1| DNA replication protein [Escherichia coli DEC1C]
gi|419022410|ref|ZP_13569657.1| DNA replication protein [Escherichia coli DEC2A]
gi|419027743|ref|ZP_13574938.1| DNA replication protein [Escherichia coli DEC2C]
gi|419033501|ref|ZP_13580599.1| DNA replication protein [Escherichia coli DEC2D]
gi|377850349|gb|EHU15314.1| DNA replication protein [Escherichia coli DEC1C]
gi|377853082|gb|EHU17988.1| DNA replication protein [Escherichia coli DEC1B]
gi|377868729|gb|EHU33460.1| DNA replication protein [Escherichia coli DEC2A]
gi|377879495|gb|EHU44068.1| DNA replication protein [Escherichia coli DEC2B]
gi|377883920|gb|EHU48438.1| DNA replication protein [Escherichia coli DEC2D]
gi|377884517|gb|EHU49027.1| DNA replication protein [Escherichia coli DEC2C]
Length = 561
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 57 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 115
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 116 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 170
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 171 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 222
Query: 334 PKKD 337
P KD
Sbjct: 223 PYKD 226
>gi|418253124|ref|ZP_12878414.1| putative replication protein P [Shigella flexneri 6603-63]
gi|397901644|gb|EJL17986.1| putative replication protein P [Shigella flexneri 6603-63]
Length = 509
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|419055997|ref|ZP_13602843.1| putative replication protein P [Escherichia coli DEC3C]
gi|420287693|ref|ZP_14789881.1| putative replication protein P [Escherichia coli TW10246]
gi|425412044|ref|ZP_18793820.1| putative replication protein P [Escherichia coli NE098]
gi|377911700|gb|EHU75868.1| putative replication protein P [Escherichia coli DEC3C]
gi|390789779|gb|EIO57222.1| putative replication protein P [Escherichia coli TW10246]
gi|408326309|gb|EKJ42130.1| putative replication protein P [Escherichia coli NE098]
Length = 952
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|387881710|ref|YP_006312012.1| putative replication protein P [Escherichia coli Xuzhou21]
gi|419886627|ref|ZP_14407262.1| bacteriophage protein [Escherichia coli O111:H8 str. CVM9570]
gi|307604107|gb|ADN68417.1| P [Stx2 converting phage vB_EcoP_24B]
gi|386795168|gb|AFJ28202.1| putative replication protein P [Escherichia coli Xuzhou21]
gi|388364972|gb|EIL28785.1| bacteriophage protein [Escherichia coli O111:H8 str. CVM9570]
Length = 968
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|417537395|ref|ZP_12190297.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353668512|gb|EHD05676.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 626
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 25/183 (13%)
Query: 167 EKLIAYLGERMISEGTLQRNSVMQ------RLHDQAIAFPYWHNGVLVGCKYRSMERK-- 218
E + YL R IS +R V+ A+ FPY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVAKRYEVVSGKVWNGERELSALVFPYKRDGELLQVKRISTERPDG 181
Query: 219 ---FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSN 274
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 182 KKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG----- 235
Query: 275 RELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
K Q++ +LD+ I + D D G A E+A RLG+ RC V P
Sbjct: 236 -------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP 288
Query: 335 KKD 337
KD
Sbjct: 289 YKD 291
>gi|419350455|ref|ZP_13891792.1| putative replication protein P [Escherichia coli DEC13B]
gi|378199716|gb|EHX60175.1| putative replication protein P [Escherichia coli DEC13B]
Length = 629
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|422352041|ref|ZP_16432842.1| hypothetical protein HMPREF9542_01385 [Escherichia coli MS 117-3]
gi|324019905|gb|EGB89124.1| hypothetical protein HMPREF9542_01385 [Escherichia coli MS 117-3]
Length = 626
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|298381536|ref|ZP_06991135.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|298278978|gb|EFI20492.1| conserved hypothetical protein [Escherichia coli FVEC1302]
Length = 626
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|237704866|ref|ZP_04535347.1| prophage protein [Escherichia sp. 3_2_53FAA]
gi|419950691|ref|ZP_14466901.1| putative replication protein [Escherichia coli CUMT8]
gi|422357968|ref|ZP_16438629.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|422837566|ref|ZP_16885539.1| hypothetical protein ESPG_00225 [Escherichia coli H397]
gi|428781787|ref|YP_007111555.1| hypothetical protein mEp043_055 [Enterobacteria phage mEp043 c-1]
gi|432755197|ref|ZP_19989746.1| hypothetical protein WEA_02182 [Escherichia coli KTE22]
gi|432788267|ref|ZP_20022398.1| hypothetical protein A1U3_02388 [Escherichia coli KTE65]
gi|432821716|ref|ZP_20055407.1| hypothetical protein A1Y5_03321 [Escherichia coli KTE118]
gi|432827853|ref|ZP_20061503.1| hypothetical protein A1YA_04578 [Escherichia coli KTE123]
gi|226901232|gb|EEH87491.1| prophage protein [Escherichia sp. 3_2_53FAA]
gi|315288260|gb|EFU47659.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|371610475|gb|EHN99003.1| hypothetical protein ESPG_00225 [Escherichia coli H397]
gi|388416406|gb|EIL76296.1| putative replication protein [Escherichia coli CUMT8]
gi|392506175|gb|AFM76466.1| hypothetical protein mEp043_055 [Enterobacteria phage mEp043 c-1]
gi|431301926|gb|ELF91123.1| hypothetical protein WEA_02182 [Escherichia coli KTE22]
gi|431336834|gb|ELG23935.1| hypothetical protein A1U3_02388 [Escherichia coli KTE65]
gi|431367368|gb|ELG53845.1| hypothetical protein A1Y5_03321 [Escherichia coli KTE118]
gi|431371746|gb|ELG57451.1| hypothetical protein A1YA_04578 [Escherichia coli KTE123]
Length = 626
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|191165477|ref|ZP_03027318.1| gp61 [Escherichia coli B7A]
gi|190904400|gb|EDV64108.1| gp61 [Escherichia coli B7A]
Length = 626
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|415855881|ref|ZP_11531005.1| gp61 [Shigella flexneri 2a str. 2457T]
gi|313649566|gb|EFS13995.1| gp61 [Shigella flexneri 2a str. 2457T]
Length = 554
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 57 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 115
Query: 219 ----FRQEKGTEKWLYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V+++ EGEID +S + G + +SVP G
Sbjct: 116 GKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 170
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+ RLG+ RC V
Sbjct: 171 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTL 222
Query: 334 PKKD 337
P KD
Sbjct: 223 PYKD 226
>gi|419924549|ref|ZP_14442437.1| putative replication protein [Escherichia coli 541-15]
gi|388389923|gb|EIL51432.1| putative replication protein [Escherichia coli 541-15]
Length = 630
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 126 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 184
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 185 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 239
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 240 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 291
Query: 334 PKKD 337
P KD
Sbjct: 292 PYKD 295
>gi|418997890|ref|ZP_13545482.1| DNA replication protein [Escherichia coli DEC1A]
gi|419038543|ref|ZP_13585600.1| DNA replication protein [Escherichia coli DEC2E]
gi|377842929|gb|EHU07976.1| DNA replication protein [Escherichia coli DEC1A]
gi|377897872|gb|EHU62243.1| DNA replication protein [Escherichia coli DEC2E]
Length = 610
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|416898467|ref|ZP_11928013.1| hypothetical protein ECSTEC7V_2822 [Escherichia coli STEC_7v]
gi|417629649|ref|ZP_12279886.1| hypothetical protein ECSTECMHI813_2572 [Escherichia coli
STEC_MHI813]
gi|424816777|ref|ZP_18241928.1| prophage protein [Escherichia fergusonii ECD227]
gi|325497797|gb|EGC95656.1| prophage protein [Escherichia fergusonii ECD227]
gi|327251981|gb|EGE63653.1| hypothetical protein ECSTEC7V_2822 [Escherichia coli STEC_7v]
gi|345372396|gb|EGX04360.1| hypothetical protein ECSTECMHI813_2572 [Escherichia coli
STEC_MHI813]
Length = 610
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|293410741|ref|ZP_06654317.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471209|gb|EFF13693.1| conserved hypothetical protein [Escherichia coli B354]
Length = 626
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|215485814|ref|YP_002328245.1| replication protein [Escherichia coli O127:H6 str. E2348/69]
gi|215263886|emb|CAS08224.1| predicted replication protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 626
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|415814992|ref|ZP_11506590.1| hypothetical protein ECLT68_4996 [Escherichia coli LT-68]
gi|323170918|gb|EFZ56568.1| hypothetical protein ECLT68_4996 [Escherichia coli LT-68]
Length = 578
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|432386191|ref|ZP_19629087.1| hypothetical protein WCY_01439 [Escherichia coli KTE16]
gi|430909112|gb|ELC30497.1| hypothetical protein WCY_01439 [Escherichia coli KTE16]
Length = 626
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|417722282|ref|ZP_12371112.1| hypothetical protein SFK304_1434 [Shigella flexneri K-304]
gi|333019692|gb|EGK38967.1| hypothetical protein SFK304_1434 [Shigella flexneri K-304]
Length = 603
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V+++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+ RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|293446711|ref|ZP_06663133.1| replication protein [Escherichia coli B088]
gi|291323541|gb|EFE62969.1| replication protein [Escherichia coli B088]
Length = 626
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|291335760|gb|ADD95363.1| T7-like primase/helicase [uncultured phage MedDCM-OCT-S05-C243]
Length = 520
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 173 LGERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERKFRQEKGTEKWLYG 231
L +R ISE T Q V + + + FPY+ N L G K ++ + F+ E T L+G
Sbjct: 61 LQKRNISESTCQHYKVYR--DGELLRFPYYSSNKTLQGFKTKTKLKDFKYEGNTTDTLFG 118
Query: 232 LDDINETAEVIIV-EGEIDKLSVEEAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQY 288
I T + I+V EGE+D LS EA + N VS+P GA +KD Q
Sbjct: 119 QSLIPSTGKRIMVYEGEMDALSGWEA-YPNWAHVSLPHGAASA---------KKDIQKQL 168
Query: 289 LWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEV 348
+ IIL D D G + E +A L + P +KDA++
Sbjct: 169 -----QLFQGFDEIILFFDKDEAGQSAQEAVAAILPSGKVKIAHLPDP-----YKDASDA 218
Query: 349 LKCLGPGALREVIENAELYQ 368
L+ A+R+ I N+ YQ
Sbjct: 219 LQNNDAEAIRKAIWNSSPYQ 238
>gi|417516209|ref|ZP_12179150.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654777|gb|EHC95968.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 561
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 57 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 115
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 116 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 170
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 171 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 222
Query: 334 PKKD 337
P KD
Sbjct: 223 PHKD 226
>gi|300919987|ref|ZP_07136446.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300412934|gb|EFJ96244.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 626
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|24112100|ref|NP_706610.1| bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30062219|ref|NP_836390.1| bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|384542280|ref|YP_005726342.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|417727131|ref|ZP_12375874.1| hypothetical protein SFK671_0806 [Shigella flexneri K-671]
gi|24050930|gb|AAN42317.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040464|gb|AAP16196.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|281600065|gb|ADA73049.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|332763407|gb|EGJ93647.1| hypothetical protein SFK671_0806 [Shigella flexneri K-671]
Length = 619
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V+++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+ RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|301019525|ref|ZP_07183691.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|299882176|gb|EFI90387.1| conserved hypothetical protein [Escherichia coli MS 196-1]
Length = 610
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|432415722|ref|ZP_19658347.1| hypothetical protein WGI_01230 [Escherichia coli KTE44]
gi|430943046|gb|ELC63175.1| hypothetical protein WGI_01230 [Escherichia coli KTE44]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|300898217|ref|ZP_07116573.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|422805050|ref|ZP_16853482.1| hypothetical protein ERIG_01192 [Escherichia fergusonii B253]
gi|300358094|gb|EFJ73964.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|324114078|gb|EGC08051.1| hypothetical protein ERIG_01192 [Escherichia fergusonii B253]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|255252730|ref|YP_003090265.1| DNA primase [Salmonella phage c341]
gi|223697703|gb|ACN18327.1| DNA primase [Salmonella phage g341c]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDGDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|221328670|ref|YP_002533512.1| DNA replication protein [Salmonella phage epsilon34]
gi|193244738|gb|ACF16677.1| DNA replication protein [Salmonella phage epsilon34]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDGDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|416596989|ref|ZP_11781804.1| hypothetical protein SEEM867_09762 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322678748|gb|EFY74804.1| hypothetical protein SEEM867_09762 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDGDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|397571773|gb|EJK47953.1| hypothetical protein THAOC_33293 [Thalassiosira oceanica]
Length = 545
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 211 KYRSMERKFRQE---KGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVPS 266
K RS+ K Q G + L+G + TA V++ EGE D ++V +A + VS+P+
Sbjct: 179 KVRSIANKSYQRLDPPGGGQGLFGWHTVPPTATSVVLTEGEFDAMAVCQATGRPAVSLPN 238
Query: 267 GAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKD 326
G R LP + L++ I+L D+D PG AE AR+LG +
Sbjct: 239 GC------RSLP-----------VQAVQMLERFDTIVLWMDSDGPGREGAEMFARKLGVE 281
Query: 327 RCWRVRWPKK-------------DEFSYFKDANEVLKCLGPGALREVIENA 364
RC VR K KDANE L LG L E+IE A
Sbjct: 282 RCLVVRPSGKRGRREGEEGAGSGPAAEVPKDANEAL--LGGWDLDELIEEA 330
>gi|399528819|ref|YP_006560867.1| DNA primase/helicase [Salmonella phage vB_SosS_Oslo]
gi|392293168|gb|AFM54449.1| DNA primase/helicase [Salmonella phage vB_SosS_Oslo]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|62178911|ref|YP_215328.1| hypothetical protein SC0341 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375113221|ref|ZP_09758391.1| hypothetical protein SCA50_0364 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62126544|gb|AAX64247.1| orf, partial conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322713367|gb|EFZ04938.1| hypothetical protein SCA50_0364 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 626
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERGLD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|219125812|ref|XP_002183166.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405441|gb|EEC45384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 646
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 21/125 (16%)
Query: 229 LYGLDDIN-ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQ 287
L+G + E E+I+ EGE D ++V +A + VS+P+G R LPP
Sbjct: 253 LFGFHTVPPEATEIILTEGEYDAMAVWQATGRPAVSLPNGC------RSLPPE------- 299
Query: 288 YLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKK---DEFSYFKD 344
L+ ++IIL D D PG AE+ A+++G +R + V+ K+ ++ KD
Sbjct: 300 ----VLPLLENFAKIILWMDNDGPGQEGAEQFAKKIGLERTYIVKPGKQHVPEDAPLPKD 355
Query: 345 ANEVL 349
AN+ L
Sbjct: 356 ANDAL 360
>gi|238912290|ref|ZP_04656127.1| hypothetical protein SentesTe_14311 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 626
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLDYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDGDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|419260312|ref|ZP_13802747.1| DNA replication protein [Escherichia coli DEC10B]
gi|378110998|gb|EHW72588.1| DNA replication protein [Escherichia coli DEC10B]
Length = 610
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 106 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 164
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 165 GKKVIMAEGDCEPCLFGWRALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 219
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 220 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 271
Query: 334 PKKD 337
P KD
Sbjct: 272 PYKD 275
>gi|170783639|ref|YP_001648921.1| putative replication protein P [Enterobacteria phage Min27]
gi|163955733|gb|ABY49883.1| putative replication protein P [Enterobacteria phage Min27]
Length = 860
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+ RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|224583090|ref|YP_002636888.1| hypothetical protein SPC_1284 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467617|gb|ACN45447.1| hypothetical protein SPC_1284 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 626
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ + + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEVFISMDGDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PHKD 291
>gi|297618194|ref|YP_003703353.1| DnaB domain-containing protein helicase [Syntrophothermus
lipocalidus DSM 12680]
gi|297146031|gb|ADI02788.1| DnaB domain protein helicase domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 800
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 45/223 (20%)
Query: 163 EPLGEKLIAYLGERMISEGTLQRNSVMQRLHDQA---------------IAFPYWHNG-- 205
EP G ++ YL R S+ +QR V R +A + P+ G
Sbjct: 132 EPEGADVLDYLRSRGYSDDLIQRMDVGARPVSEAGVPAGLKLPGGPEYRLLVPFRSRGGR 191
Query: 206 --VLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVS 263
+ G + E ++ G + L G + A ++VEG +D + +E AG Q V+
Sbjct: 192 LVAVAGRRLDGGEPRYMYPPGMGRALLGQHVLRRDAVPVVVEGLMDAIVLEAAGVQGVVA 251
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
+ G Q E L + R++L DAD G A E L R L
Sbjct: 252 L-------------------GGAQASGGQIEVLRQYQRVVLALDADDAGRAGTERLVRAL 292
Query: 324 GKD--RCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
+ + + W KD +E+ + G +RE IENA
Sbjct: 293 VRSGVKTYVAEW-----VGGAKDPDELFRTAGASPIREAIENA 330
>gi|110806565|ref|YP_690085.1| bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|424838955|ref|ZP_18263592.1| putative bacteriophage protein [Shigella flexneri 5a str. M90T]
gi|110616113|gb|ABF04780.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|383468007|gb|EID63028.1| putative bacteriophage protein [Shigella flexneri 5a str. M90T]
Length = 968
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELD-ALVLPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+ RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PYKD 291
>gi|300936072|ref|ZP_07151016.1| conserved hypothetical protein [Escherichia coli MS 21-1]
gi|300458765|gb|EFK22258.1| conserved hypothetical protein [Escherichia coli MS 21-1]
Length = 626
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 167 EKLIAYLGERMISEGTLQRNSVM-------QRLHDQAIAFPYWHNGVLVGCKYRSMERK- 218
E + YL R IS ++R V+ +R D A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEIVKRYEVVSGKVWNGERELD-ALVIPYKRDGELLQVKRISTERPD 180
Query: 219 ----FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVS 273
E E L+G ++ V++ EGEID +S + G + +SVP G
Sbjct: 181 GKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGI-SALSVPFGGG---- 235
Query: 274 NRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRW 333
K Q++ +LD+ I + D D G A E+A RLG+ RC V
Sbjct: 236 --------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTL 287
Query: 334 PKKD 337
P KD
Sbjct: 288 PCKD 291
>gi|416570385|ref|ZP_11766046.1| hypothetical protein SEEM41H_03152 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363575669|gb|EHL59519.1| hypothetical protein SEEM41H_03152 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
Length = 626
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 167 EKLIAYLGERMISEGTLQRNSVMQ------RLHDQAIAFPYWHNGVLVGCKYRSMERK-- 218
E + YL R IS +R V+ A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVAKRYEVVSGKVWNGERELNALVLPYKRDGELLQVKRISTERPDG 181
Query: 219 ---FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSN 274
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 182 KKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG----- 235
Query: 275 RELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
K Q++ +LD+ I + D D G A E+A RLG+ RC V P
Sbjct: 236 -------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP 288
Query: 335 KKD 337
KD
Sbjct: 289 HKD 291
>gi|62362274|ref|YP_224199.1| gp61 [Enterobacteria phage ES18]
gi|58339117|gb|AAW70532.1| gp61 [Enterobacteria phage ES18]
Length = 626
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 74/183 (40%), Gaps = 25/183 (13%)
Query: 167 EKLIAYLGERMISEGTLQRNSVMQ------RLHDQAIAFPYWHNGVLVGCKYRSMERK-- 218
E + YL R IS +R V+ A+ PY +G L+ K S ER
Sbjct: 122 ESHLEYLQSRGISPEVAKRYEVVSGKVWNGERELNALVLPYKRDGELLQVKRISTERPDG 181
Query: 219 ---FRQEKGTEKWLYGLDDINETAE-VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSN 274
E E L+G ++ V++ EGEID +S + G +SVP G
Sbjct: 182 KKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGIP-ALSVPFGGG----- 235
Query: 275 RELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWP 334
K Q++ +LD+ I + D D G A E+A RLG+ RC V P
Sbjct: 236 -------KGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP 288
Query: 335 KKD 337
KD
Sbjct: 289 HKD 291
>gi|194100328|ref|YP_002003758.1| gp4 [Enterobacteria phage EcoDS1]
gi|193201323|gb|ACF15802.1| gp4 [Enterobacteria phage EcoDS1]
Length = 562
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y +G VG K R E+ F + L+G N +++I EGEID LSV +
Sbjct: 109 VADYYDRSGAKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQ 168
Query: 256 AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
V G P VS LP K N E+LD+ IIL D D PG
Sbjct: 169 --------VQDGKYPVVS---LPLGSKSAKKAMAANL-EYLDQFEEIILMFDMDEPGRQA 216
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
E+ A L R K + +KDAN L+ A+ + I NA+ +
Sbjct: 217 IEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPF 262
>gi|440794402|gb|ELR15563.1| mitochondrial helicase twinkle, putative [Acanthamoeba castellanii
str. Neff]
Length = 766
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 194 DQAIAFPYWHNGVLVG------CKYRSMERKFRQE---KGTEKWLYGLDDINETA-EVII 243
+Q + FP W + G K RS++ K Q G + +G + A E++I
Sbjct: 287 EQCVTFP-WIDADAEGRNSIRRLKIRSIKNKANQRLTPAGGQWGFFGWHTVPADAKEIVI 345
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGE D ++V +A +S+P+GA EL PR L++ +I
Sbjct: 346 TEGEFDAMAVYQATGLPAISLPNGA--HSLPVELLPR---------------LERFEKIY 388
Query: 304 LGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
L D D PG A + A++LG RC VR K+ + KDAN+ L+
Sbjct: 389 LWMDDDIPGQEGAAKFAQKLGIKRCLLVR-TKQGDPEGPKDANDALRA 435
>gi|70672402|gb|AAZ06404.1| mitochondrial helicase twinkle [Acanthamoeba castellanii]
Length = 765
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 194 DQAIAFPYWHNGVLVG------CKYRSMERKFRQE---KGTEKWLYGLDDINETA-EVII 243
+Q + FP W + G K RS++ K Q G + +G + A E++I
Sbjct: 287 EQCVTFP-WIDADAEGRNSIRRLKIRSIKNKANQRLTPAGGQWGFFGWHTVPADAKEIVI 345
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGE D ++V +A +S+P+GA EL PR L++ +I
Sbjct: 346 TEGEFDAMAVYQATGLPAISLPNGA--HSLPVELLPR---------------LERFEKIY 388
Query: 304 LGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKC 351
L D D PG A + A++LG RC VR K+ + KDAN+ L+
Sbjct: 389 LWMDDDIPGQEGAAKFAQKLGIKRCLLVR-TKQGDPEGPKDANDALRA 435
>gi|194100433|ref|YP_002003806.1| gp4A [Klebsiella phage K11]
gi|193201372|gb|ACF15850.1| gp4A [Klebsiella phage K11]
Length = 576
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 49/241 (20%)
Query: 142 GSNKIRKVMSSRQVAEKSLGLEPLGEKLIAY---------LGERMISEGTLQRNSV-MQR 191
GS + + +SSR+ + G+ G L+ + L R IS+ T Q+ + +
Sbjct: 49 GSEERTEKLSSRRPKGGNYGMNTQGSGLLVFGESDGRYTDLTARGISKATCQKAGYWVAK 108
Query: 192 LHDQAIAFPYW--HNGVLVGCKYRSMERKFRQEKGTEKW--LYGLDDINETAEVIIVEGE 247
+ A + NG +V K R E+ F +G+ K L+G N +++I EGE
Sbjct: 109 VRGTAYQVADYRDQNGSIVSQKLRDKEKNF-STRGSHKGDALFGKHLWNGGKKIVITEGE 167
Query: 248 IDKLSVEEAGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
ID L+V + Q+C VS+ GA +K Y E+ D +II
Sbjct: 168 IDMLTVMQ--LQDCKWPVVSLGHGASAA---------KKTCSANY-----EYFDSFDQII 211
Query: 304 LGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF--KDANEVLKCLGPGALREVI 361
L D D PG A EE A +V P K + KDANE CL G +EV+
Sbjct: 212 LMFDMDDPGRAAVEEAA---------QVLPPGKVHVAVLTEKDANE---CLLKGKGKEVL 259
Query: 362 E 362
+
Sbjct: 260 D 260
>gi|325272848|ref|ZP_08139185.1| DNA primase/helicase [Pseudomonas sp. TJI-51]
gi|324102053|gb|EGB99562.1| DNA primase/helicase [Pseudomonas sp. TJI-51]
Length = 483
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 34/178 (19%)
Query: 200 PYWHN-GVLVGCKYRSMERKFR-QEKGTEKWLYGLDD-INETAEVIIVEGEIDKLSVEEA 256
PY+ N GV+V K R ++ F G + L+G + + ++++ EGE+D +SV +
Sbjct: 41 PYFDNSGVMVAQKLRDQDKGFAILGDGAKLTLFGQNLWASGGKKIVVTEGELDAMSVSQV 100
Query: 257 GFQN----CVSVPSGAPP--KVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADT 310
QN VS+P+GAP K R + E+L+ +IL D D
Sbjct: 101 --QNNKWPVVSLPNGAPAARKAIQRNI----------------EYLESFEEVILMFDMDE 142
Query: 311 PGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQ 368
PG A+E A +C K KDANE+L + I NA+LY+
Sbjct: 143 PGREAAQECAELFSPGKC-------KIATLSMKDANELLVAGREQEIVTAIWNAKLYR 193
>gi|26988994|ref|NP_744419.1| DNA primase/helicase [Pseudomonas putida KT2440]
gi|24983814|gb|AAN67883.1|AE016420_5 DNA primase/helicase [Pseudomonas putida KT2440]
Length = 544
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 34/178 (19%)
Query: 200 PYWHN-GVLVGCKYRSMERKFR-QEKGTEKWLYGLDD-INETAEVIIVEGEIDKLSVEEA 256
PY+ N GV+V K R ++ F G + L+G + + ++++ EGE+D +SV +
Sbjct: 102 PYFDNSGVMVAQKLRDQDKGFAILGDGAKLTLFGQNLWASGGKKIVVTEGELDAMSVSQV 161
Query: 257 GFQN----CVSVPSGAPP--KVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADT 310
QN VS+P+GAP K R + E+L+ +IL D D
Sbjct: 162 --QNNKWPVVSLPNGAPAARKAIQRNI----------------EYLESFEEVILMFDMDE 203
Query: 311 PGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQ 368
PG A+E A +C K KDANE+L + I NA+LY+
Sbjct: 204 PGREAAQECAELFSPGKC-------KIATLSMKDANELLVAGREQEIVTAIWNAKLYR 254
>gi|281416294|ref|YP_003347534.1| DNA primase/helicase [Klebsiella phage KP32]
gi|262410413|gb|ACY66678.1| DNA primase/helicase [Klebsiella phage KP32]
Length = 582
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 49/241 (20%)
Query: 142 GSNKIRKVMSSRQVAEKSLGLEPLGEKLIAY---------LGERMISEGTLQRNSV-MQR 191
GS + + +SSR+ + G+ G L+ + L R IS+ T Q+ + +
Sbjct: 56 GSEERTEKLSSRRPKGGNYGMNTQGSGLLIFGESDGRYTDLTARGISKATCQKAGYWVAK 115
Query: 192 LHDQAIAFPYW--HNGVLVGCKYRSMERKFRQEKGTEKW--LYGLDDINETAEVIIVEGE 247
+ A + NG +V K R E+ F +G+ K L+G N +++I EGE
Sbjct: 116 VRGTAYQVADYRDQNGSIVSQKLRDKEKNF-STRGSHKGDALFGKHLWNGGKKIVITEGE 174
Query: 248 IDKLSVEEAGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
ID L+V + Q+C VS+ GA +K Y E+ D +II
Sbjct: 175 IDMLTVMQ--LQDCKWPVVSLGHGASAA---------KKTCSANY-----EYFDSFDQII 218
Query: 304 LGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF--KDANEVLKCLGPGALREVI 361
L D D PG A EE A +V P K + KDANE CL G +EV+
Sbjct: 219 LMFDMDDPGRAAVEEAA---------QVLPPGKVHVAVLTEKDANE---CLLKGKGKEVL 266
Query: 362 E 362
+
Sbjct: 267 D 267
>gi|338826825|ref|YP_004678739.1| DNA primase/helicase [Enterobacteria phage K30]
gi|335335288|gb|AEH41032.1| DNA primase/helicase [Enterobacteria phage K30]
Length = 576
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 49/241 (20%)
Query: 142 GSNKIRKVMSSRQVAEKSLGLEPLGEKLIAY---------LGERMISEGTLQRNSV-MQR 191
GS + + +S+R+ + G+ G L+ + L R IS+ T Q+ + +
Sbjct: 49 GSEERTEKLSARRPKGGNYGMNTQGSGLLVFGESDGRYTDLTARGISKATCQKAGYWVAK 108
Query: 192 LHDQAIAFPYW--HNGVLVGCKYRSMERKFRQEKGTEKW--LYGLDDINETAEVIIVEGE 247
+ A + NG +V K R E+ F +G+ K L+G N +++I EGE
Sbjct: 109 VSGTAYQVADYRDQNGSIVSQKLRDKEKNF-STRGSHKGDALFGKHLWNGGKKIVITEGE 167
Query: 248 IDKLSVEEAGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
ID L+V + Q+C VS+ GA +K Y E+ D +II
Sbjct: 168 IDMLTVMQ--LQDCKWPVVSLGHGASAA---------KKTCSANY-----EYFDSFDQII 211
Query: 304 LGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF--KDANEVLKCLGPGALREVI 361
L D D PG A EE A +V P K + KDANE CL G +EV+
Sbjct: 212 LMFDMDEPGRAAVEEAA---------QVLPPGKVHVAVLTEKDANE---CLLKGKGKEVL 259
Query: 362 E 362
+
Sbjct: 260 D 260
>gi|77118185|ref|YP_338107.1| primase/helicase [Enterobacteria phage K1F]
gi|72527929|gb|AAZ72981.1| primase/helicase [Enterobacteria phage K1F]
Length = 586
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y +G VG K R E+ F + L+G N +++I EGEID LSV +
Sbjct: 109 VADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQ 168
Query: 256 AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
V G P VS LP K N E+LD+ IIL D D PG
Sbjct: 169 --------VQDGKYPVVS---LPLGAKSAKKAMAANL-EYLDQFEEIILMFDMDEPGRQA 216
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
E+ A L R K + +KDAN L+ A+ + I NA+ +
Sbjct: 217 IEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPF 262
>gi|317487302|ref|ZP_07946097.1| toprim domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316921492|gb|EFV42783.1| toprim domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 598
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFR-QEKGTEKWLYGLDDINETA-EVIIVEGEIDKLSVE 254
IA Y H G+LV R ++FR + +E L+G +VI+ EGEID LS+
Sbjct: 114 IAPLYDHEGILVAQHLRFEGKEFRWRGSASEAVLFGQTLWRRGGRKVIVTEGEIDCLSIS 173
Query: 255 EAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG 312
+ VS+P+G+ +G +Y+ E L+ ++ D D PG
Sbjct: 174 QLQGNKWPVVSLPNGS--------------SSGAKYIRASLEWLESFDEVVFAFDMDEPG 219
Query: 313 HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
A+E A L + R P KDANE CL G +E+I+
Sbjct: 220 QKAAKECALLLSPGKAKIARLP-------MKDANE---CLVAGKGKELID 259
>gi|118399623|ref|XP_001032136.1| Toprim domain containing protein [Tetrahymena thermophila]
gi|89286474|gb|EAR84473.1| Toprim domain containing protein [Tetrahymena thermophila SB210]
Length = 1088
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 29/166 (17%)
Query: 207 LVGCKYR---SMERKFRQEK--GTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQN 260
L+ CK R S +K+ + K G++ ++GL+ + + A E++I EGE D ++V +A
Sbjct: 313 LIKCKIRGIGSENKKYMRVKPSGSKSGIFGLNTVPQNAKELVITEGEYDAMAVNQATGLP 372
Query: 261 CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELA 320
VS+P+GA LP E L+K+ +I L D D G ++LA
Sbjct: 373 AVSLPNGAS------NLP-----------LEVIECLEKIEKIYLWLDNDEVGRNNRQKLA 415
Query: 321 RRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAEL 366
+LG R + V + KDAN++L+ ++ + E+A +
Sbjct: 416 EKLGVHRTYIVNTLGE------KDANDILRQDPSRIIKYIQESATI 455
>gi|388549268|gb|AFK66467.1| primase/helicase [Synechococcus phage S-CBP3]
Length = 535
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 173 LGERMISEGTLQRNSVMQRLHDQAIAFPYW-HNGVLVGCKYRSMERKFRQEKGTEKWLYG 231
L +R ISE Q+ + + + F Y+ +G+L GCK ++ + F E L+G
Sbjct: 74 LPKRGISEKVCQQYKIYR--DGDVLRFHYFDSSGILKGCKVKTKNKVFSYEGEVPGTLFG 131
Query: 232 LDDINETAE-VIIVEGEIDKLSVEE--AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQY 288
+ + V+I EGE+D S +E +G+ VS+P GA +K Y
Sbjct: 132 QHLFPSSGKRVVITEGELDAASCQEVMSGWP-MVSLPGGAGTA---------KKSVQRAY 181
Query: 289 LWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEV 348
W L I+L D D G EE A L +C ++ + D +KDA++
Sbjct: 182 EW-----LQGYEEIVLFFDNDEAGRKATEEAASVLPPGKC-KIASLQGD----YKDASDA 231
Query: 349 LKCLGPGALREVIENAELYQ 368
L P A+R I +A+ Y+
Sbjct: 232 LSANDPEAVRRAIWDAKPYR 251
>gi|83308133|emb|CAJ29366.1| gp4B protein [Enterobacteria phage K1F]
Length = 516
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y +G VG K R E+ F + L+G N +++I EGEID LSV +
Sbjct: 59 VADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQ 118
Query: 256 AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
V G P VS LP K N E+LD+ IIL D D PG
Sbjct: 119 --------VQDGKYPVVS---LPLGAKSAKKAMAANL-EYLDQFEEIILMFDMDEPGRQA 166
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
E+ A L R K + +KDAN L+ A+ + I NA+ +
Sbjct: 167 IEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPF 212
>gi|83308132|emb|CAJ29365.1| gp4A protein [Enterobacteria phage K1F]
Length = 566
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y +G VG K R E+ F + L+G N +++I EGEID LSV +
Sbjct: 109 VADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQ 168
Query: 256 AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
V G P VS LP K N E+LD+ IIL D D PG
Sbjct: 169 --------VQDGKYPVVS---LPLGAKSAKKAMAANL-EYLDQFEEIILMFDMDEPGRQA 216
Query: 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
E+ A L R K + +KDAN L+ A+ + I NA+ +
Sbjct: 217 IEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPF 262
>gi|281208797|gb|EFA82972.1| T7-like mitochondrial DNA helicase [Polysphondylium pallidum PN500]
Length = 710
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 197 IAFPYWH-----NGVLVGCKYRSMERKFRQE---KGTEKWLYGLDDIN-ETAEVIIVEGE 247
I FP+ + N + CK R++E K Q KG + +G + + E+++ EGE
Sbjct: 315 ITFPWTNLDKKGNVITHRCKLRALESKALQRIEPKGGKWGFFGWHTVPLDAKEIVLTEGE 374
Query: 248 IDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTD 307
D ++V ++ + +S+P+GA LP L++ +I L D
Sbjct: 375 YDAMAVYQSTGKPTISLPNGA------NSLPIA-----------LLPLLERFEKIYLWMD 417
Query: 308 ADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
D PG A + A +LG R + VR K+ E + KDAN+ L L L +++E+A
Sbjct: 418 DDIPGQEGAAKFAEKLGIQRTFIVR-TKQGEDNGPKDANDAL--LQGRDLNKILESA 471
>gi|194015768|ref|ZP_03054384.1| DNA primase [Bacillus pumilus ATCC 7061]
gi|194013172|gb|EDW22738.1| DNA primase [Bacillus pumilus ATCC 7061]
Length = 333
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 164 PLGEKLI--------AYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSM 215
PL E L+ AYL R ISE +QR + + + A+ N L KYRS
Sbjct: 121 PLAESLLTDVKIGPNAYLTNRGISE-DVQREAGVGLIGKTAVIPWRLPNKRLANVKYRST 179
Query: 216 ERK-FRQEKG---TEKWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAP 269
K F KG + +YG++ + + ++ E EID LS AG+ C G+
Sbjct: 180 RNKAFWYAKGGLPIRELIYGIETVYADRAKTAVLAEAEIDALSWRTAGY--CGIATGGSK 237
Query: 270 PKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL-GKDRC 328
++ + + +I+ TD D G L +E+ ++ GK
Sbjct: 238 FSAEKADIIAQ----------------SSIEYLIVITDNDEAGKKLRKEVELKMRGK--- 278
Query: 329 WRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQLHV 371
VR +KDANE+L G GAL+ V+ AE ++V
Sbjct: 279 --VRLAHGYITEGYKDANELLMAKGEGALKRVVSRAEAVSINV 319
>gi|386855013|ref|YP_006262753.1| hypothetical protein DGo_PB0409 [Deinococcus gobiensis I-0]
gi|380002490|gb|AFD27678.1| hypothetical protein DGo_PB0409 [Deinococcus gobiensis I-0]
Length = 343
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSM-----ERKFRQEKGTE 226
+ G +++ L R R+ + + P WH G L+ K R++ R+ R GT
Sbjct: 158 HYGAGVVNSTVLARRP--HRIWEGMVTLPTWHQGALLALKGRNLLGKGEGREMRNLAGTG 215
Query: 227 KWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSV 264
YGL ++ ++ V+ VEGE D LS+ +A F+ VSV
Sbjct: 216 TAPYGLRELRDSHAVLAVEGETDTLSIWQA-FEGEVSV 252
>gi|428164842|gb|EKX33854.1| hypothetical protein GUITHDRAFT_98228 [Guillardia theta CCMP2712]
Length = 440
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 24/161 (14%)
Query: 196 AIAFPYWH--NGVLVGCKYRSMERK--FRQEKGTEKW-LYGLDDINE-TAEVIIVEGEID 249
++ FP++ LV K R++E K + + W +G ++E T E+++ EGEID
Sbjct: 2 SVTFPWFSPTESELVRVKVRAIEDKKCMKLDPSGNIWGFFGWTTVSEDTTEIVLTEGEID 61
Query: 250 KLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDAD 309
++V + +S+P+GA LP L++ I L D D
Sbjct: 62 AMTVYQETGLPSLSLPNGAS------SLPVE-----------LIAMLERFQTIYLWMDDD 104
Query: 310 TPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLK 350
PG A ++LG+ RC +V W + S KDAN+ L+
Sbjct: 105 VPGREGARMCLKKLGRHRC-KVVWCRDGGNSGPKDANDALQ 144
>gi|21234366|ref|NP_640276.1| DNA primase [Vibrio phage VpV262]
gi|21064879|gb|AAM28363.1| DNA primase [Vibrio phage VpV262]
Length = 287
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 87 DSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGR-AFAGSNK 145
D CI R HL+CP C+GG S ERSL V DG +RC+RV CG +G+ +G
Sbjct: 16 DLCIGERSDHLVCPCCRGGD-SGERSLLVWCHADG--LAYRCYRVKCGLSGKIGQSGYRP 72
Query: 146 IRKVMSSRQVAEKSLGLEPLGEKLIA-YLGERMISEGTLQR-NSVMQRLHDQAIAFP 200
+ M + + L EPL ++ YL ++ + R N V+ + I +P
Sbjct: 73 VSTKMRKPKCHTRQLHPEPLPNDVLDWYLDYFWWADAKMLRVNGVLWDETTERILYP 129
>gi|325185979|emb|CCA20483.1| twinkle protein putative [Albugo laibachii Nc14]
Length = 776
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 38/174 (21%)
Query: 203 HNGV-LVGCKYRSMERKFRQE---KGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAG 257
HN +V K R++ K +Q KG L+G + + A E+++ EGE D ++V +A
Sbjct: 280 HNAYHVVRLKTRALGDKSKQRLIPKGGSWGLFGWNTVPADADEIVLTEGEFDAMTVYQAT 339
Query: 258 FQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAE 317
+ VS+P+G + LPP + L++ +I L D D G A
Sbjct: 340 GKPAVSLPNGC------QSLPP-----------SILPLLERFKKIYLWMDNDAQGQANVS 382
Query: 318 ELARRLGKDRCWRVRW-----PKKDEFSYFKDANEVLKCLGPGALREVIENAEL 366
+ +LG+ RC VR PK KDANE A RE I+ A+L
Sbjct: 383 KFTIKLGQSRCHIVRMASAALPKS---CNIKDANE--------AYREKIDLAKL 425
>gi|78044503|ref|YP_359315.1| DNA primase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996618|gb|ABB15517.1| DNA primase [Carboxydothermus hydrogenoformans Z-2901]
Length = 575
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 54/255 (21%)
Query: 142 GSNKIRKVMSSRQVAEKS-----LGLEPLGEKLIAYLGERMISEGTLQRNSVMQR----- 191
+ K R + SR + E++ LG P + L A+L + + G L + ++ +
Sbjct: 126 AAGKARDYLQSRGITEETVKDFMLGFAPSAKALPAFLSSKGYNPGELVKIGIVTKSYSGN 185
Query: 192 LHDQA---IAFPYW-HNGVLVGC----------KYRSMERKFRQEKGTEKWLYGLDD--- 234
LHD+ + FP + G +VG KY + + +KG K YG
Sbjct: 186 LHDRFAGRLIFPIFDREGRVVGFGGRALGEEKPKYFNSPQSVIFDKG--KLFYGFKQART 243
Query: 235 -INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCK 293
I E + I+VEG D +S+ +AG +N ++ A + L K+ GY
Sbjct: 244 TIREKRQAILVEGYFDVISLHQAGVKNAIACLGTAFTEEHLNFL----KNYGY------- 292
Query: 294 EHLDKVSRIILGTDADTPGHALAE---ELARRLGKDRCWRVRWPKKDEFSYFKDANEVLK 350
+ IIL D+D G A E+ R D ++ FKD +E++K
Sbjct: 293 -----IEEIILAYDSDQAGEKAAYRALEMLVRASADLSIKI-----IRLGEFKDPDELIK 342
Query: 351 CLGPGALREVIENAE 365
G A E IE A+
Sbjct: 343 NRGATAFLEEIEKAK 357
>gi|148724467|ref|YP_001285433.1| primase/helicase [Cyanophage Syn5]
gi|145588112|gb|ABP87931.1| primase/helicase [Synechococcus phage Syn5]
Length = 534
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 197 IAFPYWHN-GVLVGCKYRSMERKFR-QEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVE 254
I FPY+ + G + K R ++F K +K L+G + ++I EGE D L+V
Sbjct: 89 IRFPYYSSAGRVCSYKERPQAKEFHWVGKNEDKQLFGQQLFGKGKSIVITEGEFDALAVW 148
Query: 255 EA--GFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG 312
+A + C SVP+GA + L ++L K IIL D D G
Sbjct: 149 QARPNWPVC-SVPNGAQGAKKSLSLQ--------------LDYLLKFDEIILMFDNDEAG 193
Query: 313 HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
A AEE + D+ + S +KDA E L+ A+R+ + N Y
Sbjct: 194 IAAAEECVQLFPADKVFLA------PLSQYKDACEALQAGDTDAIRQAVWNKRTY 242
>gi|194100434|ref|YP_002003807.1| gp4B [Klebsiella phage K11]
gi|193201373|gb|ACF15851.1| gp4B [Klebsiella phage K11]
Length = 508
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEKW--LYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R E+ F +G+ K L+G N +++I EGEID L+V + Q+
Sbjct: 54 QNGSIVSQKLRDKEKNF-STRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQ--LQD 110
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D +IIL D D PG A
Sbjct: 111 CKWPVVSLGHGASAA---------KKTCSANY-----EYFDSFDQIILMFDMDDPGRAAV 156
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYF--KDANEVLKCLGPGALREVIEN 363
EE A+ L P K + KDANE CL G +EV++
Sbjct: 157 EEAAQVLP---------PGKVHVAVLTEKDANE---CLLKGKGKEVLDQ 193
>gi|171912822|ref|ZP_02928292.1| hypothetical protein VspiD_16620 [Verrucomicrobium spinosum DSM
4136]
Length = 630
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 41/237 (17%)
Query: 161 GLEPLGEK--LIAYLG-ERMISEGTLQRNSVMQRLHDQAIAFP-YWHNGVLVGCKYRSM- 215
G+ P+ E+ ++ YL +R + ++R V A+ FP + +G LV YR++
Sbjct: 151 GVIPVAEEGVVMRYLQLQRGLDPAVVRRFGVEGLPSAGALVFPCHAPDGTLVNRSYRTVP 210
Query: 216 ---------ERKFRQEKGTEKWLYGLDDINETA----EVIIVEGEIDKLSVEEAGFQNCV 262
++ Q+ G L+G + ++A V++ EG+ID ++ + G +
Sbjct: 211 GPGESGLGARKRVWQDAGCAPSLFGWQALPKSAWEKRTVLLCEGQIDAMTWTQWGVP-AL 269
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
SVP+G TG ++ + + L+ I L D D G A + +R
Sbjct: 270 SVPNG----------------TGAAWIDHEWDQLELFDHIYLSFDMDGAGAENANRVMQR 313
Query: 323 LGKDRCWRVRWPKKD------EFSYFKDANEVLKCLGPGALREVIENAELYQLHVSE 373
LG+ RC V+ P KD E DA + P + +++ EL+Q +SE
Sbjct: 314 LGRHRCLLVKLPHKDANECLLEGCTADDAEHWIAQARPPQIHKLLLGQELHQRLMSE 370
>gi|298713554|emb|CBJ27082.1| mitochondrial helicase twinkle [Ectocarpus siliculosus]
Length = 634
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 204 NGVLVGCKYRSMERKF--RQEKGTEKW-LYGLDDINETA-EVIIVEGEIDKLSVEEAGFQ 259
+ V V K R++ K R + +W ++GL + + A EV++ EGE D ++V +A +
Sbjct: 206 DAVTVRVKARAVRNKQWQRLDPAGGRWGIFGLHTVPDGATEVVLTEGEYDAMAVYQATGK 265
Query: 260 NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEEL 319
VS+P+GA L++ ++I L D D G A ++
Sbjct: 266 PAVSLPNGASSLPL-----------------EVLPLLERFNKIYLWMDHDGAGQAGVDKF 308
Query: 320 ARRLGKDRCWRVRWPKKDEFSYFKDANEVL 349
+LG RC VR P +D+ + KDANE L
Sbjct: 309 VLKLGTRRCLVVR-PLEDDPNPPKDANEAL 337
>gi|70672400|gb|AAZ06403.1| mitochondrial helicase twinkle [Vermamoeba vermiformis]
Length = 724
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 206 VLVGCKYRSMERKFRQ--EKGTEKW-LYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCV 262
LV KYR++ K+ Q E W ++G + I VII EGE D ++V +A +
Sbjct: 286 TLVRYKYRALGGKWLQRLEPIGGGWCVFGWNLIAPETSVIITEGEFDAMAVYQATGLPAI 345
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
S+P GA P E T L++ +I L D D G A++ A +
Sbjct: 346 SLPCGA-------NCLPVEVIT----------MLERFDKIYLWLDDDVVGQQAAQKYALK 388
Query: 323 LGKDRCWRVRWPKKDEFSYFKDANEVLK 350
LG++RC+ V K + KDAN+ L+
Sbjct: 389 LGRERCYLVS-TKLGATTGPKDANDALR 415
>gi|61806417|ref|YP_214194.1| T7-like primase/helicase [Prochlorococcus phage P-SSP7]
gi|61374342|gb|AAX44196.1| T7-like primase/helicase [Prochlorococcus phage P-SSP7]
Length = 520
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 35/204 (17%)
Query: 173 LGERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERKFRQEKGTEKWLYG 231
L +R ISE T ++ + + + + FPY+ +G L G K + + F+ E + L+G
Sbjct: 62 LQKRGISEKTCEKYKIYR--DETHLRFPYFDGSGCLKGFKTKDKLKNFKYEGVSTDTLFG 119
Query: 232 LDDINETAE-VIIVEGEIDKLSVEEAGFQN--CVSVPSGAPP--KVSNRELPPREKDTGY 286
T + ++I EGE+D S EA +N VS+P GA K +++P + GY
Sbjct: 120 QHLFPSTGKRIVITEGELDAASCYEA-MENWPMVSLPHGAAGARKDLQKQIPLLQ---GY 175
Query: 287 QYLWNCKEHLDKVSRIILGTDADTPGHALAEELAR--RLGKDRCWRVRWPKKDEFSYFKD 344
+ I+L D D G E+ A LGK + R+ +KD
Sbjct: 176 E-------------EIVLFFDNDDAGRRAVEQAASILPLGKVKIARLEQ--------YKD 214
Query: 345 ANEVLKCLGPGALREVIENAELYQ 368
A++ L+ A+R I +A+ YQ
Sbjct: 215 ASDALQANDKDAIRRAIWDAKEYQ 238
>gi|82793115|ref|YP_249580.2| Primase/Helicase [Vibriophage VP4]
Length = 569
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 109 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 166
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 167 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 212
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A A+E A + + P KDANE CL G +EVI+
Sbjct: 213 GRAAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 253
>gi|281416177|ref|YP_003347912.1| DNA primase/helicase [Vibrio phage N4]
gi|237701484|gb|ACR16477.1| DNA primase/helicase [Vibrio phage N4]
Length = 568
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 211
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A A+E A + + P KDANE CL G +EVI+
Sbjct: 212 GRAAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 252
>gi|66473270|gb|AAY46279.1| DNA primase/helicase [Vibriophage VP4]
Length = 504
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 44 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 101
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 102 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 147
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A A+E A + + P KDANE CL G +EVI+
Sbjct: 148 GRAAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 188
>gi|383389399|gb|AFH14415.1| DNA primase/helicase [Vibrio phage VP3]
Length = 574
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 114 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 171
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 172 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 217
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A A+E A + + P KDANE CL G +EVI+
Sbjct: 218 GRAAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 258
>gi|290995598|ref|XP_002680370.1| predicted protein [Naegleria gruberi]
gi|284093990|gb|EFC47626.1| predicted protein [Naegleria gruberi]
Length = 813
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 29/144 (20%)
Query: 218 KFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
KF+ EK + N+ +II EGE D ++V + VS+P+G R L
Sbjct: 383 KFKNEKPSTTTTTTNPQSNDLKTIIITEGEFDAMAVYQKTGIPAVSLPNGC------RSL 436
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKK- 336
P + + L+ +I L D D PG AE +++LG RC+ V K
Sbjct: 437 P-----------VDVVQWLEDFDKIYLWMDDDVPGQQGAELFSKKLGVGRCYIVHSNYKE 485
Query: 337 --DEF---------SYFKDANEVL 349
DE+ KDANE L
Sbjct: 486 VVDEYGDPIEQTNEKKIKDANEAL 509
>gi|323512045|gb|ADX87506.1| DNA primase/helicase [Vibrio phage ICP3_2009_B]
gi|323512093|gb|ADX87553.1| DNA primase/helicase [Vibrio phage ICP3_2009_A]
Length = 568
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 211
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A+E A + + P KDANE CL G +EVI+
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 252
>gi|323512142|gb|ADX87601.1| DNA primase/helicase [Vibrio phage ICP3_2008_A]
gi|323512190|gb|ADX87648.1| DNA primase/helicase [Vibrio phage ICP3_2007_A]
Length = 568
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 211
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A+E A + + P KDANE CL G +EVI+
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 252
>gi|325171290|ref|YP_004251261.1| DNA primase/helicase [Vibrio phage ICP3]
gi|323511996|gb|ADX87458.1| DNA primase/helicase [Vibrio phage ICP3]
Length = 568
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
IA Y G LV K R ++ F+ K ++ ++G + N ++II EGEID L+V
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 256 AGFQNC----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
A Q C VS+P GA ++ ++ IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANL--------------DYFEQFEEIILMFDQDDA 211
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G A+E A + + P KDANE CL G +EVI+
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANE---CLLAGKTKEVID 252
>gi|57234645|ref|YP_181296.1| DNA primase [Dehalococcoides ethenogenes 195]
gi|57225093|gb|AAW40150.1| DNA primase [Dehalococcoides ethenogenes 195]
Length = 590
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 52/246 (21%)
Query: 147 RKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTLQRNSVMQR-----LHDQ 195
R + SR + E+SL LG + L YL ER ++ L + V+ R +HD+
Sbjct: 133 RSYLKSRGLNEQSLADFQLGYALPEWQGLYDYLKERSYTDEDLLKAGVIVRSDEGRIHDR 192
Query: 196 ---AIAFPYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLD----DINETA 239
I +P + G + G R M+ K+R T+ + LYGL I E
Sbjct: 193 FRNNIIYPIANYKGQIAGFGARVMDNSQPKYRNSPQTDLFNKSSLLYGLHLASASIREKN 252
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
+ IIVEG +D + + GF N V+ A +++R++ ++ T +
Sbjct: 253 QAIIVEGYMDAIMSHQGGFTNTVACMGTA---LTDRQIALVKRQTKH------------- 296
Query: 300 SRIILGTDADTPG-HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
+ILG DAD+ G A + + RV P+ KD +E+++ P +
Sbjct: 297 --LILGLDADSAGEEATLRAIDYENQIESEIRVAVPEGG-----KDPDEIIRH-APQTWQ 348
Query: 359 EVIENA 364
E+++NA
Sbjct: 349 EILDNA 354
>gi|339752345|gb|AEJ92379.1| gp54 [Mycobacterium phage Timshel]
Length = 179
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 197 IAFPY--W---HNGVLVGCKYRSME---RKFRQEKGTEKWLYG-LDDINETAEVIIVEGE 247
+A PY W H +V +YR ++ K+ G + WLY + I ET EV I EGE
Sbjct: 32 LAIPYLRWSQEHGWCVVSIRYRRLDGEKPKYMTAPGDQTWLYNTIALIKETPEVAITEGE 91
Query: 248 IDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTD 307
ID ++ + G +PS P +N + RE GYQ ++ + D
Sbjct: 92 IDAVTAQVCG------IPSVGVPGANNWKPYMRELFLGYQTVY-------------ILAD 132
Query: 308 ADTPGHALAEELARRLGKDRC 328
D G A +A+ L R
Sbjct: 133 GDDAGALFANTVAKTLPNSRV 153
>gi|212671399|ref|YP_002308398.1| DNA primase/helicase [Kluyvera phage Kvp1]
gi|211997243|gb|ACJ14560.1| DNA primase/helicase [Kluyvera phage Kvp1]
Length = 569
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 111 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 170
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K Y E+ D+ IIL D D PG
Sbjct: 171 LQEGKYPVVSLPMGAQAA---------KKTCAANY-----EYFDQFDEIILMFDMDEPGR 216
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 217 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
>gi|194100271|ref|YP_002003469.1| gp4A [Enterobacteria phage BA14]
gi|193201266|gb|ACF15746.1| gp4A [Enterobacteria phage BA14]
Length = 570
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 111 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 170
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K Y E+ D+ IIL D D PG
Sbjct: 171 LQEGKYPVVSLPMGAQAA---------KKTCAANY-----EYFDQFDEIILMFDMDEPGR 216
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 217 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
>gi|224015275|ref|XP_002297295.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968040|gb|EED86397.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 729
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 236 NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEH 295
+ E+II EGE D ++V +A + VS+P+G R LP
Sbjct: 292 HNATEIIITEGEFDAMAVYQATGRPAVSLPNGC------RSLP-----------MEVLLL 334
Query: 296 LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKK--DEFSYFKDANEVL 349
L+ + L D D PG AE AR+LG +RC V+ K KDANE L
Sbjct: 335 LENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEAL 390
>gi|312436361|gb|ADQ83170.1| DNA primase/helicase [Yersinia phage Yep-phi]
Length = 569
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 110 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 169
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K Y E+ D+ IIL D D PG
Sbjct: 170 LQEGKYPVVSLPMGAQAA---------KKTCSANY-----EYFDQFDEIILMFDMDEPGR 215
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 216 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 260
>gi|119637760|ref|YP_918996.1| DNA primase/helicase [Yersinia phage Berlin]
gi|194100483|ref|YP_002003328.1| gp4A [Yersinia phage Yepe2]
gi|119391791|emb|CAJ70664.1| hypothetical protein [Yersinia phage Berlin]
gi|193201216|gb|ACF15697.1| gp4A [Yersinia phage Yepe2]
gi|387941877|gb|AFK13457.1| T7-like phage primase/helicase protein [Yersinia phage YpP-G]
Length = 570
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 111 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 170
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K Y E+ D+ IIL D D PG
Sbjct: 171 LQEGKYPVVSLPMGAQAA---------KKTCSANY-----EYFDQFDEIILMFDMDEPGR 216
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 217 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
>gi|224005435|ref|XP_002291678.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972197|gb|EED90529.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 610
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 236 NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEH 295
++ E+II EGE D ++V +A + VS+P+G R LP
Sbjct: 195 HDATEIIITEGEFDAMAVYQATGRPAVSLPNGC------RSLP-----------MEVLLL 237
Query: 296 LDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEF--SYFKDANEVLKCLG 353
L+ + L D D PG AE AR+LG +RC V+ K KDANE L L
Sbjct: 238 LENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEAL--LT 295
Query: 354 PGALREVIENA 364
+ E++E A
Sbjct: 296 GWDINELLEEA 306
>gi|242037151|ref|XP_002465970.1| hypothetical protein SORBIDRAFT_01g049170 [Sorghum bicolor]
gi|241919824|gb|EER92968.1| hypothetical protein SORBIDRAFT_01g049170 [Sorghum bicolor]
Length = 156
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 289 LWNCKEHLDKVSRIILGTDADTPGHALAEELARRL---------GKDRCWRVRWPKK-DE 338
L C + K SRIIL TD D PG AL+ EL L G+ R ++ +
Sbjct: 53 LAACVDQRAKASRIILATDNDGPGQALSGELLLNLVKKDVGESSGQRRMIQILVKTQMSS 112
Query: 339 FSYFKDANEVLKCLGPGALREVIENAELYQLHVS 372
+ F D +VL LG ALR+VIE+ ELY + S
Sbjct: 113 CNTFFDL-QVLMFLGRQALRKVIEDGELYPIRGS 145
>gi|312436362|gb|ADQ83171.1| DNA helicase [Yersinia phage Yep-phi]
Length = 503
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 44 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 103
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K Y E+ D+ IIL D D PG
Sbjct: 104 LQEGKYPVVSLPMGAQAA---------KKTCSANY-----EYFDQFDEIILMFDMDEPGR 149
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 150 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 194
>gi|423635713|ref|ZP_17611366.1| hypothetical protein IK7_02122 [Bacillus cereus VD156]
gi|401276903|gb|EJR82848.1| hypothetical protein IK7_02122 [Bacillus cereus VD156]
Length = 338
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 32/208 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERK-FRQEKGTE--- 226
YLG+R ISE ++ + QA+ P++ NG LV KYR + K F EK +
Sbjct: 137 YLGQRGISEEVQRQMKIGYDRFRQAVVIPWFDTNGRLVNIKYRKISSKVFWYEKDGKPIG 196
Query: 227 KWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
+YGL + E EID +S AG + S + + + L
Sbjct: 197 DLIYGLHLAYKRNIKRAVYCEAEIDAMSFMTAGVFGLANGGSSFNQRKAEQILKS----- 251
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL-GKDRCWRVRWPKKDEFSYFK 343
+ +++ D D G L +EL + L GK R FK
Sbjct: 252 -------------PIEELVIVADNDPAGEKLRKELEKYLNGKIRL------TNGYVRRFK 292
Query: 344 DANEVLKCLGPGALREVIENAELYQLHV 371
DANE L G +L V++N E +L +
Sbjct: 293 DANEALIKEGASSLISVVDNVEPVRLKL 320
>gi|119637761|ref|YP_918997.1| Helicase [Yersinia phage Berlin]
gi|194100484|ref|YP_002003329.1| 4B [Yersinia phage Yepe2]
gi|119391792|emb|CAJ70665.1| hypothetical protein [Yersinia phage Berlin]
gi|193201217|gb|ACF15698.1| 4B [Yersinia phage Yepe2]
Length = 503
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 44 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 103
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K Y E+ D+ IIL D D PG
Sbjct: 104 LQEGKYPVVSLPMGAQAA---------KKTCSANY-----EYFDQFDEIILMFDMDEPGR 149
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 150 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 194
>gi|401406728|ref|XP_003882813.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
Length = 2215
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 194 DQAIAFPYWHNGVLVGCKYRSMERK--FRQEKGTEKW-LYGLDDINETAEVIIV-EGEID 249
D + A P +V K RS+ K R +W L+G + A+ ++V EGE D
Sbjct: 361 DGSGAEPSAPTASIVRVKARSITEKSCMRLLPAGGQWGLFGAGTVPAEADTVVVTEGEFD 420
Query: 250 KLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDAD 309
+SV + VSVP GA LP Q L ++ +IIL D D
Sbjct: 421 AMSVFQQTGLPAVSVPMGA------HSLP-------VQVL----PFFERFKKIILWMDED 463
Query: 310 TPGHALAEELARRLGKDRCWRVR 332
G AE A +LG RC+ VR
Sbjct: 464 AAGREGAELFASKLGIGRCYLVR 486
>gi|340507023|gb|EGR33048.1| hypothetical protein IMG5_063030 [Ichthyophthirius multifiliis]
Length = 422
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 31/166 (18%)
Query: 206 VLVGCKYRSMERKFRQ-----EKGTEKWLYGLDDINETA-EVIIVEGEIDKLSV-EEAGF 258
V V CK R + ++ +Q G L+GL+ + A E++I EGE D ++V +E G
Sbjct: 13 VHVKCKIRGVGKENKQFMRMKPSGQSSGLFGLNTVPINAKEIVITEGEYDAMAVFQETGI 72
Query: 259 QNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEE 318
+ +S+P+GA LP + + NC E +K I L D D G +
Sbjct: 73 PS-ISLPNGAC------NLPCQ--------VINCLEQFEK---IYLWMDNDQAGQNNYPK 114
Query: 319 LARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
+A +LG +R + V K E KDAN+VL+ P + + I+ A
Sbjct: 115 IAEKLGLNRSFIV-LTKNGE----KDANDVLRK-NPHKMIQYIKEA 154
>gi|320158401|ref|YP_004190779.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
gi|319933713|gb|ADV88576.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
Length = 552
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 39/235 (16%)
Query: 148 KVMSSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVM---------QRLHDQAIA 198
K MSS + +PL + A L +R +SE T +R S +RL I
Sbjct: 49 KPMSSSASNAVTSDFKPLRGEFRA-LPKRGLSEETAKRFSYRVGEAWHPENKRLEMAHIC 107
Query: 199 FPYWHNGVLVGCKYRSMERKF----RQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVE 254
+G LV K R ++ F + KGT L G+ + +++ EGE+D LSV
Sbjct: 108 DVKTEDGKLVAQKCRFADKAFSVNGKIPKGT---LIGMHLFSGGRRLVVSEGEVDMLSVS 164
Query: 255 EAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG 312
+ VS+P+G S +L C ++L K ++L D D G
Sbjct: 165 QMQGNKYPVVSLPNGVQSAKS--------------HLLACIDYLKKFDEVVLAFDMDDVG 210
Query: 313 HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
A++ A L V+ K + KDAN++L+ + + + NAE+Y
Sbjct: 211 QDSAQKAAEALAG--VVNVKIAKYE----LKDANDMLRAGKTSEMVQALWNAEVY 259
>gi|270307916|ref|YP_003329974.1| DNA primase [Dehalococcoides sp. VS]
gi|270153808|gb|ACZ61646.1| DNA primase [Dehalococcoides sp. VS]
Length = 590
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 52/246 (21%)
Query: 147 RKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTLQRNSVMQR-----LHDQ 195
R + SR + +SL LG +KL YL ER ++ L + V+ R +HD+
Sbjct: 133 RSYLKSRGLNGQSLADFQLGYALPEWQKLYDYLKERSYTDEELLKAGVIVRSDEGRIHDR 192
Query: 196 ---AIAFPYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLD----DINETA 239
I +P + G + G R M+ K+R T+ + LYGL I E
Sbjct: 193 FRNNIIYPIANYKGQIAGFGARVMDNSQPKYRNSPQTDLFDKSSLLYGLHLASASIREKN 252
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
+ IIVEG +D + + GF N V+ A +++R++ ++ T
Sbjct: 253 QAIIVEGYMDAIMSHQGGFTNTVACMGTA---LTDRQIALIKRQT--------------- 294
Query: 300 SRIILGTDADTPG-HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
++LG DAD+ G A + + RV P+ KD +E+++ P +
Sbjct: 295 KNLVLGLDADSAGEEATLRAIDYENQIESEIRVAVPEGG-----KDPDEIIRH-APQTWQ 348
Query: 359 EVIENA 364
E+++NA
Sbjct: 349 EILDNA 354
>gi|326536124|ref|YP_004300553.1| gp4a [Enterobacteria phage 285P]
gi|256861513|gb|ACV32469.1| gp4a [Enterobacteria phage 285P]
Length = 570
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE 255
+A Y G LVG K R ++F + K L+G N ++++ EGEID L+V +
Sbjct: 111 VANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDCLTVAQ 170
Query: 256 --AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGH 313
G VS+P GA +K + E+ D+ IIL D D PG
Sbjct: 171 LQEGKYPVVSLPMGAQAA---------KKTCAANF-----EYFDQFDEIILMFDMDEPGR 216
Query: 314 ALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAE 365
EE A L + P KDANE L A+ + I NA+
Sbjct: 217 KAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
>gi|417706326|ref|ZP_12355385.1| gp61 domain protein [Shigella flexneri VA-6]
gi|333007159|gb|EGK26650.1| gp61 domain protein [Shigella flexneri VA-6]
Length = 760
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 242 IIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSR 301
++ EGEID +S + G + +SVP G K Q++ +LD+
Sbjct: 1 MLCEGEIDCMSYAQYGI-SALSVPFGGG------------KGAKQQWIEFEYHNLDRFEE 47
Query: 302 IILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
I + D D G A E+A RLG+ RC V P KD
Sbjct: 48 IFISMDVDDVGREAAREIASRLGEHRCRLVTLPYKD 83
>gi|282857715|ref|ZP_06266924.1| DNA primase/helicase [Pyramidobacter piscolens W5455]
gi|282584385|gb|EFB89744.1| DNA primase/helicase [Pyramidobacter piscolens W5455]
Length = 537
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 197 IAFPYWHNGVLVGCKYRSMERKFRQEKGTEKW-LYGLDDINETAEVIIV-EGEIDKLSVE 254
+A Y NG V R ++ FR + LYG N+ +++IV EGEID LSV
Sbjct: 41 VATYYDQNGEPVAQHLRGKDKTFRWRGSPQNVKLYGQQLWNDHGKMVIVTEGEIDCLSVS 100
Query: 255 EAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG 312
+ VSVP+G V + + E L+ ++++ D D PG
Sbjct: 101 QVQGNRWPVVSVPNGVTSAV--------------RAFKDNLEWLESFEKVVICFDMDEPG 146
Query: 313 HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQ 368
A E A+ L + + + P KD N++LK L I +A Y+
Sbjct: 147 RKAANEAAQVLSPGKAFIMYLP-------LKDPNDMLKAGKTAELISAIWSAAPYR 195
>gi|194100378|ref|YP_002003952.1| gp4A [Enterobacteria phage 13a]
gi|193201425|gb|ACF15902.1| gp4A [Enterobacteria phage 13a]
Length = 564
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 112 QNGTIVSQKIRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 168
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 169 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 214
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 215 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 250
>gi|407437748|gb|AFU20507.1| gp54 [Mycobacterium phage Arturo]
Length = 219
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR +E K+ G + WLY L + E EV I
Sbjct: 68 MAIPYLRWSREHGWIVVAIRYRCIENHDHRGHGKYMTAPGDQPWLYNTLALLREVPEVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FLGYRTVY------------- 168
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
+ D D PG A +A+ L R
Sbjct: 169 ILADGDEPGAEFANRVAQTLPNSRV 193
>gi|456738218|gb|EMF62895.1| DNA primase/helicase [Stenotrophomonas maltophilia EPM1]
Length = 488
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 201 YWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEVIIVEGEIDKLSVEEA-GF 258
Y +G +V K R ++KF ++ L+G ++I EGEID LSV +A G
Sbjct: 43 YKRDGGIVAQKLRYPDKKFSFIGDSKACGLFGQHLYEPGRRLVITEGEIDALSVAQALGL 102
Query: 259 Q-NCVSVPSGA--PPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315
+ VSVP+GA K REL E ++ ++L D D PG A
Sbjct: 103 RWPVVSVPNGAQGAAKSIKREL----------------EWVNGFDEVVLMFDMDEPGQAA 146
Query: 316 AEELARRLGKDRCWRVRWPKKD 337
A+E+A L + + P KD
Sbjct: 147 AQEVALLLTPGKAKIAQLPAKD 168
>gi|194100379|ref|YP_002003953.1| gp4B [Enterobacteria phage 13a]
gi|193201426|gb|ACF15903.1| gp4B [Enterobacteria phage 13a]
Length = 503
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 51 QNGTIVSQKIRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 107
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 108 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 153
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 154 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 189
>gi|452203397|ref|YP_007483530.1| DNA primase [Dehalococcoides mccartyi DCMB5]
gi|452110456|gb|AGG06188.1| DNA primase [Dehalococcoides mccartyi DCMB5]
Length = 588
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 52/246 (21%)
Query: 147 RKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTLQRNSVMQR-----LHDQ 195
R ++SR + E+SL LG + L YL ER S+ L + V+ R +HD+
Sbjct: 133 RTYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLKAGVIVRSDEGRIHDR 192
Query: 196 ---AIAFPYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLD----DINETA 239
I +P + G + G R M+ K+R T+ + LYGL I E
Sbjct: 193 FRNNIIYPIANYKGQIAGFGARVMDNSQPKYRNSPQTDLFDKSSLLYGLHLASASIRENN 252
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
IIVEG +D + + GF N V+ A ++ R++ ++ T
Sbjct: 253 RAIIVEGYMDAIMSHQGGFTNTVACMGTA---LTERQIALIKRQT--------------- 294
Query: 300 SRIILGTDADTPG-HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
++LG D+D+ G A + + RV P+ KD +E+++ P + +
Sbjct: 295 KNLVLGLDSDSAGEEATLRAIDYENQMESEIRVAVPEGG-----KDPDELIRH-SPQSWQ 348
Query: 359 EVIENA 364
E+++NA
Sbjct: 349 EILDNA 354
>gi|152989961|ref|YP_001355683.1| DNA primase DnaG [Nitratiruptor sp. SB155-2]
gi|151421822|dbj|BAF69326.1| DNA primase DnaG [Nitratiruptor sp. SB155-2]
Length = 552
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 40/197 (20%)
Query: 150 MSSRQVAEKSLGLEPLGEKLIAYLGERMI------SEGTLQRNS--VMQRLHDQAIAFP- 200
+++ + + LG P G I YL + I G L ++S V RL ++ I FP
Sbjct: 145 VANNSIEKFELGYAPEGNTQIQYLKKEFIPLQDAIQTGILSQDSGRVYARLVER-ITFPI 203
Query: 201 YWHNGVLVGCKYRSMER---KFRQEKGTE-----KWLYGL----DDINETAEVIIVEGEI 248
Y NG LVG R++ K+ T+ K LYG +I + E+I+ EG +
Sbjct: 204 YSPNGALVGFGGRTITNHPAKYLNSPETKLFHKSKILYGYHLAKQEIYKKKELIVCEGYL 263
Query: 249 DKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDA 308
D + + +AGFQN V+ A ++ LP K R+IL D
Sbjct: 264 DVVMLHQAGFQNAVATLGTA---LTPSHLPLLRKGE---------------PRVILAYDG 305
Query: 309 DTPGHALAEELARRLGK 325
D G A + ++ L K
Sbjct: 306 DRAGIEAALKASKMLTK 322
>gi|403330901|gb|EJY64364.1| putative hydrolases or acyltransferases (alpha/beta hydrolase
superfamily) [Oxytricha trifallax]
Length = 1556
Score = 43.5 bits (101), Expect = 0.16, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 218 KFRQEKGTEKWLYGLDDIN-ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRE 276
KF K L+GL I E ++I EGE D ++V + VS+P+GA
Sbjct: 243 KFMPAGSDLKGLFGLTTIKPEHKAIVITEGEYDAMAVYQETGIPAVSLPNGA------NH 296
Query: 277 LPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKK 336
LP Q L ++ RI L DAD G AE+ A++LG R + +
Sbjct: 297 LP-------VQVL----PFFERFERIYLWLDADEVGRNSAEKFAQKLGVKRTIIIDSRFE 345
Query: 337 DEFSYFKDANEVLK 350
DE + KDAN+ L+
Sbjct: 346 DE-NGPKDANDALR 358
>gi|422023029|ref|ZP_16369535.1| hypothetical protein OO7_10807 [Providencia sneebia DSM 19967]
gi|414094759|gb|EKT56423.1| hypothetical protein OO7_10807 [Providencia sneebia DSM 19967]
Length = 368
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 295 HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGP 354
+LD+ + I L DAD G A+E+A RLG+ RC V PKKD + +CL
Sbjct: 28 NLDRFTEIWLSLDADEVGREAAKEIANRLGEYRCRLVSLPKKD----------INECLQA 77
Query: 355 GALREVI 361
G +E I
Sbjct: 78 GITQEEI 84
>gi|422935540|ref|YP_007005441.1| DNA primase/helicase [Erwinia phage vB_EamP-L1]
gi|339507924|gb|AEJ81485.1| DNA primase/helicase [Erwinia phage vB_EamP-L1]
Length = 572
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 173 LGERMISEGTLQRNSV-MQRLHDQAIAFPYW--HNGVLVGCKYRSMERKFRQE-KGTEKW 228
L +R ISE T ++ + ++++Q + NG +V K R ++ F+ K +
Sbjct: 88 LTKRGISEETCRKAGYWIAKVNNQMYQVADYRDQNGSIVSQKIRDKDKNFKTTGKHSPDA 147
Query: 229 LYGLDDINETAEVIIVEGEIDKLSVEEAGFQNC----VSVPSGAPPKVSNRELPPREKDT 284
L+ N ++++ EGEID L+V E Q+C VS+ G+ K + + L
Sbjct: 148 LFLKHLWNGGKKIVVTEGEIDALTVME--LQDCKYPVVSIGHGS--KAAKKTLAAN---- 199
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKD 344
++ D+ IIL D D PG EE A L + P KD
Sbjct: 200 --------FDYFDQFDEIILMFDMDEPGRIAIEECAPVLPSGKVRVAVLPD-------KD 244
Query: 345 ANEVLKCLGPGALREVIENA 364
ANE + AL E I NA
Sbjct: 245 ANECMLNGNQKALMEQIWNA 264
>gi|289432440|ref|YP_003462313.1| DNA primase [Dehalococcoides sp. GT]
gi|288946160|gb|ADC73857.1| DNA primase [Dehalococcoides sp. GT]
Length = 588
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 52/246 (21%)
Query: 147 RKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTLQRNSVMQR-----LHDQ 195
R ++SR + E+SL LG + L YL ER S+ L + V+ R +HD+
Sbjct: 133 RIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLKAGVIVRSDEGRIHDR 192
Query: 196 ---AIAFPYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLD----DINETA 239
I +P + G + G R M+ K+R T+ + LYGL I E
Sbjct: 193 FRNNIIYPIANYKGQIAGFGARVMDNSQPKYRNSPQTDLFDKSSLLYGLHLASASIRENN 252
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
IIVEG +D + + GF N V+ A ++ R++ ++ T
Sbjct: 253 RAIIVEGYMDAIMSHQGGFTNTVACMGTA---LTERQIALIKRQT--------------- 294
Query: 300 SRIILGTDADTPG-HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
++LG D+D+ G A + + RV P+ KD +E+++ P + +
Sbjct: 295 KNLVLGLDSDSAGEEATLRAIDYENQMESEIRVAVPEGG-----KDPDELIRH-SPQSWQ 348
Query: 359 EVIENA 364
E+++NA
Sbjct: 349 EILDNA 354
>gi|345893813|ref|ZP_08844605.1| hypothetical protein HMPREF1022_03265 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045849|gb|EGW49748.1| hypothetical protein HMPREF1022_03265 [Desulfovibrio sp.
6_1_46AFAA]
Length = 563
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 236 NETAEVIIVEGEIDKLSVEEAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCK 293
N V++ EGEID +SV + VS+P+GA V +++
Sbjct: 147 NSGRRVVVTEGEIDCMSVSQLQGNKWPVVSLPNGAQSAV--------------KFIRRAL 192
Query: 294 EHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
E L+ ++L D D PG A A E A +C R P KD
Sbjct: 193 EWLEGFDEVVLAFDMDEPGQAAARECALLFSPGKCKIARLPDKD 236
>gi|147669172|ref|YP_001213990.1| DNA primase [Dehalococcoides sp. BAV1]
gi|146270120|gb|ABQ17112.1| DNA primase [Dehalococcoides sp. BAV1]
Length = 588
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 52/246 (21%)
Query: 147 RKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTLQRNSVMQR-----LHDQ 195
R ++SR + E+SL LG + L YL ER S+ L + V+ R +HD+
Sbjct: 133 RIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLKAGVIVRSDEGRIHDR 192
Query: 196 ---AIAFPYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLD----DINETA 239
I +P + G + G R M+ K+R T+ + LYGL I E
Sbjct: 193 FRNNIIYPIANYKGQIAGFGARVMDNSQPKYRNSPQTDLFDKSSLLYGLHLASASIRENN 252
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
IIVEG +D + + GF N V+ A ++ R++ ++ T
Sbjct: 253 RAIIVEGYMDAIMSHQGGFTNTVACMGTA---LTERQIALIKRQT--------------- 294
Query: 300 SRIILGTDADTPG-HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
++LG D+D+ G A + + RV P+ KD +E+++ P + +
Sbjct: 295 KNLVLGLDSDSAGEEATLRAIDYENQMESEIRVAVPEGG-----KDPDELIRH-SPQSWQ 348
Query: 359 EVIENA 364
E+++NA
Sbjct: 349 EILDNA 354
>gi|452204833|ref|YP_007484962.1| DNA primase [Dehalococcoides mccartyi BTF08]
gi|452111889|gb|AGG07620.1| DNA primase [Dehalococcoides mccartyi BTF08]
Length = 588
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 52/246 (21%)
Query: 147 RKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTLQRNSVMQR-----LHDQ 195
R ++SR + E+SL LG + L YL ER S+ L + V+ R +HD+
Sbjct: 133 RIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLKAGVIVRSDEGRIHDR 192
Query: 196 ---AIAFPYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLD----DINETA 239
I +P + G + G R M+ K+R T+ + LYGL I E
Sbjct: 193 FRNNIIYPIANYKGQIAGFGARVMDNSQPKYRNSPQTDLFDKSSLLYGLHLASASIRENN 252
Query: 240 EVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
IIVEG +D + + GF N V+ A ++ R++ ++ T
Sbjct: 253 RAIIVEGYMDAIMSHQGGFTNTVACMGTA---LTERQIALIKRQT--------------- 294
Query: 300 SRIILGTDADTPG-HALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALR 358
++LG D+D+ G A + + RV P+ KD +E+++ P + +
Sbjct: 295 KNLVLGLDSDSAGEEATLRAIDYENQMESEIRVAVPEGG-----KDPDELIRH-SPQSWQ 348
Query: 359 EVIENA 364
E+++NA
Sbjct: 349 EILDNA 354
>gi|9627447|ref|NP_041975.1| DNA primase/helicase [Enterobacteria phage T7]
gi|130907|sp|P03692.1|PRIM_BPT7 RecName: Full=DNA primase/helicase
gi|15584|emb|CAA24405.1| unnamed protein product [Enterobacteria phage T7]
gi|37956659|gb|AAP33929.1| gene 4A [Enterobacteria phage T7]
gi|265524986|gb|ACY75849.1| DNA primase/helicase [Enterobacteria phage T7]
Length = 566
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 114 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 170
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 171 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 216
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 217 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 252
>gi|30387470|ref|NP_848279.1| primase/helicase protein [Yersinia phage phiA1122]
gi|30314107|gb|AAP20515.1| primase/helicase protein [Yersinia phage phiA1122]
gi|387941777|gb|AFK13359.1| T7-like phage primase/helicase protein [Yersinia phage YpP-Y]
gi|387941831|gb|AFK13412.1| T7-like phage primase/helicase protein [Yersinia phage YpP-R]
gi|387941928|gb|AFK13507.1| T7-like phage primase/helicase protein [Yersinia phage YpsP-G]
gi|432142762|gb|AGB07340.1| DNA primase/helicase [Yersinia phage R]
Length = 566
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 114 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 170
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 171 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 216
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 217 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 252
>gi|39654615|pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654616|pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654617|pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654618|pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654619|pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654620|pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654621|pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 51 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 107
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 108 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 153
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 154 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 189
>gi|37956818|gb|AAP34085.1| gene 4A [Enterobacteria phage T7]
gi|37956872|gb|AAP34138.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 114 QNGNIVSQKIRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 170
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 171 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 216
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 217 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 252
>gi|37956820|gb|AAP34087.1| gene 4B [Enterobacteria phage T7]
gi|37956874|gb|AAP34140.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 51 QNGNIVSQKIRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 107
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 108 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 153
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 154 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 189
>gi|9627449|ref|NP_041977.1| helicase [Enterobacteria phage T7]
gi|15586|emb|CAA24407.1| unnamed protein product [Enterobacteria phage T7]
gi|37956661|gb|AAP33931.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 51 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 107
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 108 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 153
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 154 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 189
>gi|254501077|ref|ZP_05113228.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
gi|222437148|gb|EEE43827.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
Length = 494
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 37/151 (24%)
Query: 213 RSMERKFRQEKGTEKWLYGLDDINETA------------EVIIVEGEIDKLSVEEA-GFQ 259
R++ +K R G K Y L D ++ +++ EGEID +SV +A
Sbjct: 57 RTVAQKVR---GKSKKFYTLGDFSKAGLFGQHLARKGGKRLVVTEGEIDAMSVHQALKTW 113
Query: 260 NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEEL 319
VS+P+GA + + E L+ +I+ D D PG A+E
Sbjct: 114 PAVSIPNGAQSAAAA--------------VKENLEFLESYEKIVFMFDGDEPGQKAAQEC 159
Query: 320 ARRLGKDRCWRVRWPKKDEFSYFKDANEVLK 350
AR L + P KDANE+LK
Sbjct: 160 ARVLSPGKACIATLP-------LKDANEMLK 183
>gi|339754537|gb|AEJ94552.1| gp52 [Mycobacterium phage Backyardigan]
gi|342239900|gb|AEL19906.1| gp54 [Mycobacterium phage Wile]
Length = 219
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
++ PY W H ++V +YR +E K+ G + WLY L + E EV I
Sbjct: 68 MSIPYLRWSREHGWIVVAVRYRCIENHDHRGHGKYMTAPGDQPWLYNTLALLREVPEVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FLGYRTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A+ L R
Sbjct: 171 --ADGDEPGAEFANRVAQTLPNSRV 193
>gi|418488325|ref|YP_007003114.1| DNA primase/helicase [Pseudomonas phage JG004]
gi|431809607|ref|YP_007236500.1| primase/helicase [Pseudomonas phage PaP1]
gi|331066707|gb|AEC53249.1| DNA primase/helicase [Pseudomonas phage JG004]
gi|339892356|gb|AEK21629.1| primase/helicase [Pseudomonas phage PaP1]
Length = 620
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 174 GERMISEGTLQRNSVMQRLHDQA--IA---FPYWHNGVLVGCKYRSMERKFRQ---EKGT 225
G R +S+ T Q V+ + IA +P N L G K R M + F + E G
Sbjct: 106 GYRGLSKETCQYFGVLHGFDPETGEIATQLYPTTTNYELTGYKQRIMPKNFSEPIGETGK 165
Query: 226 EKWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKD 283
+ L+G + + +V+IV GE+D+LS FQ S+ E P
Sbjct: 166 DCELFGQFRFKNSNSKKVLIVGGEVDQLSA----FQMLKEYDDRRAGGKSDYEPTPVVSP 221
Query: 284 T-----GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
T ++ L E LD+ +IIL D+D G A++ A +L K + + + +KD
Sbjct: 222 TIGESGAWKQLQAQYEWLDRFEQIILCFDSDDAGREAADKAADKLPKGKVFMMEMNRKDP 281
Query: 339 FSYFK 343
Y K
Sbjct: 282 NEYLK 286
>gi|328872591|gb|EGG20958.1| T7-like mitochondrial DNA helicase [Dictyostelium fasciculatum]
Length = 711
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 210 CKYRSMERKFRQE---KGTEKWLYGLDDINETA-EVIIVEGEIDKLSVEEAGFQNCVSVP 265
CK RS K Q KG + +G I A E+II EGE D ++V +A + +S+P
Sbjct: 326 CKLRSARSKVHQRIEPKGGKFGFFGWHTIPADAKEIIITEGEYDAMAVYQATKRPTISLP 385
Query: 266 SGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELA--RRL 323
+G LPP LD+ I L D D PG A++ A R
Sbjct: 386 NGCA------SLPPA-----------LVPQLDRFETIYLWMDDDVPGQEGAKKFAIHTRQ 428
Query: 324 GK 325
GK
Sbjct: 429 GK 430
>gi|326804438|ref|YP_004327242.1| primase/helicase [Pseudomonas phage PAK_P1]
gi|290873851|gb|ADD65054.1| primase/helicase [Pseudomonas phage PAK_P1]
Length = 620
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 174 GERMISEGTLQRNSVMQRLHDQA--IA---FPYWHNGVLVGCKYRSMERKFRQ---EKGT 225
G R +S+ T Q V+ + IA +P N L G K R M + F + E G
Sbjct: 106 GYRGLSKETCQYFGVLHGFDPETGEIATQLYPTTTNYELTGYKQRIMPKNFSEPIGETGK 165
Query: 226 EKWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKD 283
+ L+G + + +V+IV GE+D+LS FQ S+ E P
Sbjct: 166 DCELFGQFRFKNSNSKKVLIVGGEVDQLSA----FQMLKEYDDRRAGGKSDYEPTPVVSP 221
Query: 284 T-----GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
T ++ L E LD+ +IIL D+D G A++ A +L K + + + +KD
Sbjct: 222 TIGESGAWKQLQAQYEWLDRFEQIILCFDSDDAGREAADKAADKLPKGKVFMMEMNRKDP 281
Query: 339 FSYFK 343
Y K
Sbjct: 282 NEYLK 286
>gi|431810029|ref|YP_007236917.1| DNA primase/helicase [Pseudomonas phage vB_PaeM_C2-10_Ab1]
gi|410025165|emb|CCM43640.1| DNA primase/helicase [Pseudomonas phage vB_PaeM_C2-10_Ab1]
Length = 620
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 174 GERMISEGTLQRNSVMQRLHDQA--IA---FPYWHNGVLVGCKYRSMERKFRQ---EKGT 225
G R +S+ T Q V+ + IA +P N L G K R M + F + E G
Sbjct: 106 GYRGLSKETCQYFGVLHGFDPETGEIATQLYPTTTNYELTGYKQRIMPKNFSEPIGETGK 165
Query: 226 EKWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKD 283
+ L+G + + +V+IV GE+D+LS FQ S+ E P
Sbjct: 166 DCELFGQFRFKNSNSKKVLIVGGEVDQLSA----FQMLKEYDDRRAGGKSDYEPTPVVSP 221
Query: 284 T-----GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDE 338
T ++ L E LD+ +IIL D+D G A++ A +L K + + + +KD
Sbjct: 222 TIGESGAWKQLQAQYEWLDRFEQIILCFDSDDAGREAADKAADKLPKGKVFMMEMNRKDP 281
Query: 339 FSYFK 343
Y K
Sbjct: 282 NEYLK 286
>gi|254505329|ref|ZP_05117477.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
gi|222436173|gb|EEE42855.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
Length = 539
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 37/151 (24%)
Query: 213 RSMERKFRQEKGTEKWLYGLDDINETA------------EVIIVEGEIDKLSVEEA-GFQ 259
R++ +K R G K Y L D ++ +++ EGEID +SV +A
Sbjct: 102 RTVAQKVR---GKSKKFYTLGDFSKAGLFGQHLARKGGKRLVVTEGEIDAMSVHQALKTW 158
Query: 260 NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEEL 319
VS+P+GA + + E L+ +I+ D D PG A+E
Sbjct: 159 PAVSIPNGAQSAAAA--------------VKENLEFLESYEKIVFMFDGDEPGQKAAQEC 204
Query: 320 ARRLGKDRCWRVRWPKKDEFSYFKDANEVLK 350
AR L + P KDANE+LK
Sbjct: 205 ARVLSPGKACIATLP-------LKDANEMLK 228
>gi|422935541|ref|YP_007005442.1| DNA helicase [Erwinia phage vB_EamP-L1]
gi|339507925|gb|AEJ81486.1| DNA helicase [Erwinia phage vB_EamP-L1]
Length = 506
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 173 LGERMISEGTLQRNSV-MQRLHDQAIAFPYW--HNGVLVGCKYRSMERKFRQE-KGTEKW 228
L +R ISE T ++ + ++++Q + NG +V K R ++ F+ K +
Sbjct: 22 LTKRGISEETCRKAGYWIAKVNNQMYQVADYRDQNGSIVSQKIRDKDKNFKTTGKHSPDA 81
Query: 229 LYGLDDINETAEVIIVEGEIDKLSVEEAGFQNC----VSVPSGAPPKVSNRELPPREKDT 284
L+ N ++++ EGEID L+V E Q+C VS+ G+ K + + L
Sbjct: 82 LFLKHLWNGGKKIVVTEGEIDALTVME--LQDCKYPVVSIGHGS--KAAKKTLAAN---- 133
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKD 344
++ D+ IIL D D PG EE A L + P KD
Sbjct: 134 --------FDYFDQFDEIILMFDMDEPGRIAIEECAPVLPSGKVRVAVLPD-------KD 178
Query: 345 ANEVLKCLGPGALREVIENA 364
ANE + AL E I NA
Sbjct: 179 ANECMLNGNQKALMEQIWNA 198
>gi|31615712|pdb|1NUI|A Chain A, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
gi|31615713|pdb|1NUI|B Chain B, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
Length = 255
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 114 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 170
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 171 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 216
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 217 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 252
>gi|423477637|ref|ZP_17454352.1| hypothetical protein IEO_03095 [Bacillus cereus BAG6X1-1]
gi|402429717|gb|EJV61800.1| hypothetical protein IEO_03095 [Bacillus cereus BAG6X1-1]
Length = 338
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 32/208 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERK-FRQEKGTE--- 226
YL +R ISEGT + QA+ P++ NG L KYR K F EK +
Sbjct: 137 YLNDRGISEGTQCAMKIGYDRIRQAVVIPWFDTNGRLANIKYRKTRGKAFWYEKDGKPIG 196
Query: 227 KWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
+YGL + E EID +S AG + S + +++ L
Sbjct: 197 DLIYGLHLAYRRNIKRAVYCEAEIDAMSFMTAGVFGLANGGSSFNQRKADQLLKS----- 251
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL-GKDRCWRVRWPKKDEFSYFK 343
+ +++ D D G L +EL + L GK R K
Sbjct: 252 -------------PIEELVIVADNDPAGEKLRKELEKYLNGKIRL------TNGYIQGHK 292
Query: 344 DANEVLKCLGPGALREVIENAELYQLHV 371
DANE L G G+L V++NAE +L +
Sbjct: 293 DANEALVKEGKGSLISVVDNAEPVRLKL 320
>gi|159465173|ref|XP_001690797.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279483|gb|EDP05243.1| predicted protein [Chlamydomonas reinhardtii]
Length = 720
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 28/152 (18%)
Query: 91 PGRYAHLLCPKCKGG-GRSLERSLSVHIIQDGDFAMWRCFRV------DCGWA------- 136
PG + + CP C GG G + S+ + +D F +RCFR D WA
Sbjct: 69 PGVFLYRTCPVCGGGEGGHDPNTFSMMVAEDYKFVWYRCFRANKCAASDKVWAEGVTRKL 128
Query: 137 GRAFAGSNKIRKVM--SSRQVAEKSLGLEPLGEKLIAYLGERMISEGTLQRNSVMQRLH- 193
RA A + +V+ SRQ + E L +AY R IS TL+ V Q
Sbjct: 129 ARADAEGGALPEVVPAPSRQELQPEAN-EWLDADALAYFAARGISPATLRAAGVYQARDV 187
Query: 194 ----------DQAIAFPYWHNGVLVGCKYRSM 215
+ + +PY GV+V + +
Sbjct: 188 PHPTLPGVSLPRVVVYPYTLRGVVVNATFHDI 219
>gi|421487320|ref|ZP_15934795.1| hypothetical protein QWC_31583, partial [Achromobacter piechaudii
HLE]
gi|400194425|gb|EJO27486.1| hypothetical protein QWC_31583, partial [Achromobacter piechaudii
HLE]
Length = 211
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 138 RAFAGSNKIRKVMSSRQVAEKSLGLEPLGEK----LIAYLGERMISEGTLQRNSVM-QRL 192
+AF G IR M +++ +P K + +L R ++E T+ + Q
Sbjct: 88 KAFLG---IRDSMPKKEMPTYKRPAKPTAHKPKQPVRDWLMSRGLTEETIAAFQIAEQER 144
Query: 193 HDQAIA-FPYWHNGVLVGCKYR--SMERKFRQEKGTEKWLYGLDDIN-ETAEVIIVEGEI 248
+ +A A FPY G + KYR S ++ RQE G E L+G I+ +T V I EGEI
Sbjct: 145 NGKAYAVFPYLREGEFINAKYRCVSDKKDMRQEGGAEPCLFGWQLIDPKTRTVAIFEGEI 204
Query: 249 DKLS 252
D ++
Sbjct: 205 DAMT 208
>gi|326424980|ref|YP_004286202.1| putative DNA primase/helicase [Pseudomonas phage phi15]
gi|325048384|emb|CBZ41997.1| putative DNA primase/helicase [Pseudomonas phage phi15]
Length = 571
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 195 QAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEVIIVEGEIDKLSV 253
+ +A Y +G +V K R ++F K L+G + +V++ EGEID L+V
Sbjct: 105 KQVANYYGDDGSIVAQKVRDRNKEFFIAGSMPKDALFGKHLWSGGKKVVVTEGEIDCLTV 164
Query: 254 EE--AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTP 311
+ G VS+P GA KD N K+ IIL D D
Sbjct: 165 AQLQGGKYPVVSIPRGA-------------KDAKKTIAAN-KDWFSGFQEIILMFDMDED 210
Query: 312 GHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELY 367
G A E A L R + + P KDANE + A+ + I NAE Y
Sbjct: 211 GRKAALEAAEVLPAGRVFIAKLP-------LKDANECILNGHAKAVMDQIWNAEKY 259
>gi|37956715|gb|AAP33984.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 114 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 170
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 171 CKYPVVSLGHGASAA---------KKTCVANY-----EYFDQFEQIILMFDMDEAGRKAV 216
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 217 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 252
>gi|258515115|ref|YP_003191337.1| TOPRIM domain-containing protein [Desulfotomaculum acetoxidans DSM
771]
gi|257778820|gb|ACV62714.1| TOPRIM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 316
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 25/137 (18%)
Query: 195 QAIAFPYW-HNGVLVGCKYRS-MERKFRQEKG---TEKWLYGLDDINETAE--VIIVEGE 247
A+ FP++ + G LV K+RS ++++F G + +YGL+ + +T + V IVE E
Sbjct: 157 HAVTFPWFDYRGDLVNIKFRSVIDKRFWYYSGGQPVKNHIYGLNFVIKTRKNRVYIVESE 216
Query: 248 IDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTD 307
ID +++ +AG A + L ++++ Q V +I+ TD
Sbjct: 217 IDAITLWQAGL---------AAVALGGANLTRQQRNLLLQ---------SPVEELIIATD 258
Query: 308 ADTPGHALAEELARRLG 324
D G +A+ + R+L
Sbjct: 259 NDLAGQRIADSIVRQLS 275
>gi|37956717|gb|AAP33986.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 51 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 107
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 108 CKYPVVSLGHGASAA---------KKTCVANY-----EYFDQFEQIILMFDMDEAGRKAV 153
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 154 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 189
>gi|71897049|ref|NP_001026515.1| twinkle protein, mitochondrial precursor [Gallus gallus]
gi|78099071|sp|Q5ZIW1.1|PEO1_CHICK RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein
homolog; Flags: Precursor
gi|53134446|emb|CAG32332.1| hypothetical protein RCJMB04_23c24 [Gallus gallus]
Length = 669
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 37/189 (19%)
Query: 164 PLGEKL--------IAYLGERMISEGTLQRNSVMQRLHDQAIAFPYW--HNGVLVGCKYR 213
PLGE L A G +++GTL+R V +A+ FP++ + L G K
Sbjct: 169 PLGELLDEEETRATKAAFGIAPLADGTLKRFGVRYLRAAKALVFPWFAPRDAALRGLKLL 228
Query: 214 SMERKFRQEKGTEKWL---------YGLDDINE-TAEVIIVEGEIDKLSVEEAGFQNCVS 263
E++ TE+ L +GL I AEV++ E+D L++ +A C++
Sbjct: 229 VAEQRGDAVSYTEETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALALHQATGVPCLA 288
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
+P GA LPP +L++ R+ L D ++ AR+L
Sbjct: 289 LPRGA------TILPP-----------ALLPYLEQFRRVTLWLGDDLRSWEASKLFARKL 331
Query: 324 GKDRCWRVR 332
RC V+
Sbjct: 332 NPKRCSLVQ 340
>gi|66806239|ref|XP_636842.1| T7-like mitochondrial DNA helicase [Dictyostelium discoideum AX4]
gi|60465241|gb|EAL63335.1| T7-like mitochondrial DNA helicase [Dictyostelium discoideum AX4]
Length = 772
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 24/159 (15%)
Query: 210 CKYRSMERKFRQE---KGTEKWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQNCVSVP 265
CK RS + K Q KG + +G I ++ E+I+ EGE D ++V + +S+P
Sbjct: 343 CKLRSTKEKSLQRIEPKGGKWGFFGWHTIPSDAKEIILTEGEYDAMAVYQETGIPTISLP 402
Query: 266 SGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGK 325
+GA LP L++ +I L D D PG A + + +LG
Sbjct: 403 NGA------NSLPIA-----------LLPLLERFEKIYLWMDDDVPGMEGAAKFSEKLGI 445
Query: 326 DRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENA 364
R + V K+++ + KDAN+ L L L+ ++ A
Sbjct: 446 QRTFIVS-TKQNDPNGPKDANDAL--LAGKDLKAILSTA 481
>gi|312135658|ref|YP_004002996.1| DnaB domain-containing protein helicase domain-containing protein
[Caldicellulosiruptor owensensis OL]
gi|311775709|gb|ADQ05196.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
owensensis OL]
Length = 607
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 171 AYLGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSM---ERKFRQEKGTEK 227
+Y R ISE +++ +V + + A+ FP +G ++ R++ +RK+ +G
Sbjct: 130 SYFASRGISEKFMEKYNVGFDVENNAVVFPIVQDGKVICWTRRNLNNPDRKYDFPQGYNA 189
Query: 228 WLYGLDDINETAE--VIIVEGEIDKLSVEEAGFQNCVSVPS 266
+ LD + + + V I EG D L++EEA Q +++ S
Sbjct: 190 IPFNLDVLKDDKQTNVFITEGVFDALTIEEAIGQPAIALNS 230
>gi|121534200|ref|ZP_01666025.1| DNA primase [Thermosinus carboxydivorans Nor1]
gi|121307303|gb|EAX48220.1| DNA primase [Thermosinus carboxydivorans Nor1]
Length = 606
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 110/261 (42%), Gaps = 53/261 (20%)
Query: 147 RKVMSSRQVAEK-----SLGLEPLG-EKLIAYLGERMISEGTLQR----------NSVMQ 190
R+ ++SR +++ LG P +KL+ L R +SE L + + +
Sbjct: 141 REYLASRGISDDIIRNFKLGFAPPAWDKLVQALTRRGLSEELLLKAGLVLTRPRGDGIYD 200
Query: 191 RLHDQAIAFPYWH-NGVLVGCKYRSMER---KFRQEKGT-----EKWLYGLD----DINE 237
R ++ + FP G +VG R ++ K+ T LYGLD I E
Sbjct: 201 RFRNR-VMFPIRDARGRVVGFGGRVLDDSSPKYLNSPDTLLFNKRHLLYGLDAAIRSIKE 259
Query: 238 TAEVIIVEGEIDKLSVEEAGFQNCV-SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHL 296
+ +VI+VEG +D ++ GF N V S+ + P+ + L C
Sbjct: 260 SGQVIVVEGYMDVITAHRFGFTNVVASLGTAFTPEQAG-------------LLERC---- 302
Query: 297 DKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGA 356
VS+++ D+D G + A A ++R + V+ E KD +E L+ GP A
Sbjct: 303 -SVSQVLFAYDSDAAGQS-ATFRALATVRERGFNVKVVSIPE---GKDPDEFLRRHGPEA 357
Query: 357 LREVIENAELYQLHVSEEALQ 377
V+ A + + ++AL+
Sbjct: 358 FARVVAQAMPFVDYQLQQALE 378
>gi|392972800|ref|YP_006488759.1| DNA primase [Enterococcus phage BC-611]
gi|389616066|dbj|BAM20898.1| DNA primase [Enterococcus phage BC-611]
Length = 314
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 36/201 (17%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWHN-GVLVGCKYRSMERK-FRQEKGT---E 226
YL R ISE T Q + + + PY + G+ KYR + K F E G +
Sbjct: 129 YLLGRGISEETQQLYRTSE--DEYKVCLPYINGMGLATALKYRRTDSKDFFYEAGNNHLK 186
Query: 227 KWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
L+G I V+I E EID ++ E GF V + GA + N+
Sbjct: 187 SMLFGYHAIYVKLPKTVVICEAEIDAMTAYEMGF---VGISLGAANLIENQ--------- 234
Query: 285 GYQYLWNCKEHLDKV--SRIILGTDADTPGHALAEELARRLGKD-RCWRVRWPKKDEFSY 341
E + KV II+GTD DT G+ AEE+ + K + +R P + +
Sbjct: 235 --------VELIKKVGLDNIIIGTDNDTKGNLAAEEIDQAFWKTHKLFRYEMPDGYDLNQ 286
Query: 342 ----FKDANEVLKCLGPGALR 358
FK A + K P LR
Sbjct: 287 YWQEFKKAPPIRKISEPKLLR 307
>gi|288957898|ref|YP_003448239.1| DNA primase [Azospirillum sp. B510]
gi|288910206|dbj|BAI71695.1| DNA primase [Azospirillum sp. B510]
Length = 950
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 100/260 (38%), Gaps = 51/260 (19%)
Query: 134 GWAGRAFAGSNKIRKVMSSRQVAEKSLGLEPL-GEKLIAYLGERMISEGTLQRNSVMQRL 192
G AGRA +R+ + +A LG P L +LG++ S+ + +++R
Sbjct: 443 GSAGRA-GLDYFLRRGLDGDTIARFRLGYAPGDSNALRTHLGKQGFSDDDMINAGLLKRP 501
Query: 193 HDQAIAFPYWHNGVLV--------------------GCKYRSMERKFRQEKGTEKWLYGL 232
D + ++ N V+ G KY + KGT LYGL
Sbjct: 502 DDGRSPYSFFRNRVMFPVTDRRGQVVAFGGRILEGDGPKYVNTADTPLFHKGT--LLYGL 559
Query: 233 DDINETAE----VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQY 288
+ A VI+ EG +D +++ AGF+ V AP + E T Q
Sbjct: 560 SRARQAAADGKPVIVAEGYMDVIALVRAGFEGAV-----APLGTALTE-------TQVQE 607
Query: 289 LWNCKEHLDKVSRIILGTDADTPGHALA----EELARRLGKDRCWRVRWPKKDEFSYFKD 344
LW +KV L D D G A E L L + RV + + E D
Sbjct: 608 LWKLIPAAEKVP--FLCFDGDNAGRRAAWRAVERLLPHLAPGQSARVAFLPEGE-----D 660
Query: 345 ANEVLKCLGPGALREVIENA 364
+ +++ GP A+ V+E A
Sbjct: 661 PDSLIRAQGPKAMGAVLETA 680
>gi|29366716|ref|NP_813761.1| putative primase/helicase [Pseudomonas phage gh-1]
gi|29243575|gb|AAO73154.1|AF493143_15 putative primase/helicase [Pseudomonas phage gh-1]
Length = 562
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 29/188 (15%)
Query: 183 LQRNSVMQRLHDQAIAFPYWHNGVLVGCKYRSMERKFRQEKGTEK-WLYGLDDINETAEV 241
++R VM + +A Y G L K R ++F +K L+G + ++
Sbjct: 98 IKREMVMAQ-----VANYYDAQGNLTSQKVRDATKEFFTAGAHDKDALFGRQLWSGGRKI 152
Query: 242 IIVEGEIDKLSVEE--AGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV 299
++ EGEID L+V + G VS+ G+ +K Y E+ D
Sbjct: 153 VVTEGEIDCLTVAQLQGGKYPVVSIGHGSKAA---------KKTCASNY-----EYFDTF 198
Query: 300 SRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALRE 359
IIL D D G A ++E A L + P FKDANE +K A+ +
Sbjct: 199 DEIILMFDMDDAGRAASQEAAEVLPPGKVKIAVLP-------FKDANECVKQGNAKAVTD 251
Query: 360 VIENAELY 367
I NA+ +
Sbjct: 252 AIWNAQPF 259
>gi|343411866|gb|AEM24730.1| DNA primase [Enterococcus phage SAP6]
Length = 314
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 36/201 (17%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWHN-GVLVGCKYRSMERK-FRQEKGT---E 226
YL R ISE T Q + + + PY + G+ KYR + K F E G +
Sbjct: 129 YLLGRGISEETQQLYRTSED--EYKVCLPYINGMGLATALKYRRTDSKDFFYEAGNNHLK 186
Query: 227 KWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
L+G I V+I E EID ++ E GF V + GA + N+
Sbjct: 187 SMLFGYHAIYVKLPKTVVICEAEIDAMTAYEMGF---VGISLGAANLIENQ--------- 234
Query: 285 GYQYLWNCKEHLDKV--SRIILGTDADTPGHALAEELARRLGKD-RCWRVRWPKKDEFSY 341
E + KV II+GTD DT G+ AEE+ + K + +R P + +
Sbjct: 235 --------VELIKKVGLDNIIIGTDNDTKGNLAAEEIDQAFWKTHKLFRYEMPDGYDLNQ 286
Query: 342 ----FKDANEVLKCLGPGALR 358
FK A + K P LR
Sbjct: 287 YWQEFKKAPPIRKISEPKLLR 307
>gi|428317847|ref|YP_007115729.1| DNA primase [Oscillatoria nigro-viridis PCC 7112]
gi|428241527|gb|AFZ07313.1| DNA primase [Oscillatoria nigro-viridis PCC 7112]
Length = 672
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 30/150 (20%)
Query: 227 KWLYGLDD----INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
K L+ LD I++ ++VEG D ++++ AG N V+ A R+L R
Sbjct: 250 KTLFALDTAKTAISKADRAVVVEGYFDAIALQAAGISNAVASLGTALSLNQVRQLL-RYT 308
Query: 283 DTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF 342
D+ +IIL DAD G AE R +G+ ++ + + +
Sbjct: 309 DS---------------KQIILNFDADKAGTQAAE---RAIGE--IEKLAYQGEVQLRVL 348
Query: 343 -----KDANEVLKCLGPGALREVIENAELY 367
KDA+E LK P RE++ENA L+
Sbjct: 349 NIPDGKDADEYLKTYSPEQYRELLENAPLW 378
>gi|406995971|gb|EKE14510.1| hypothetical protein ACD_12C00462G0002 [uncultured bacterium]
Length = 517
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 41/162 (25%)
Query: 184 QRNSVMQRLHDQAIAFPYWHNGVLVG--------------CKYRSMERKFRQEKGTEKWL 229
QR+S R + + H G +VG KY + KG L
Sbjct: 112 QRDSYYDRFRGRLMFTLKNHRGQVVGFAGRKIFADDKDNEAKYINTSETLVYTKGN--IL 169
Query: 230 YGLD----DINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTG 285
YGLD I + + I+VEGEID LS +AG N V++ A + EL R DT
Sbjct: 170 YGLDITKEAIRKEGKAIVVEGEIDALSSFQAGVSNVVAIKGSALTQ-EQLELLKRYCDT- 227
Query: 286 YQYLWNCKEHLDKVSRIILGTDADTPGHALAE---ELARRLG 324
+++ DAD G A ELA +LG
Sbjct: 228 ----------------LLISLDADLAGDLAARRGIELAEKLG 253
>gi|423413993|ref|ZP_17391113.1| hypothetical protein IE1_03297 [Bacillus cereus BAG3O-2]
gi|423430223|ref|ZP_17407227.1| hypothetical protein IE7_02039 [Bacillus cereus BAG4O-1]
gi|401098660|gb|EJQ06671.1| hypothetical protein IE1_03297 [Bacillus cereus BAG3O-2]
gi|401120132|gb|EJQ27930.1| hypothetical protein IE7_02039 [Bacillus cereus BAG4O-1]
Length = 338
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 32/208 (15%)
Query: 172 YLGERMISEGTLQRNSVMQRLHDQAIAFPYWH-NGVLVGCKYRSMERK-FRQEKGTE--- 226
YLG+R ISE + + QA+ P++ NG LV KYR + K F EK +
Sbjct: 137 YLGQRGISEEVQWQMKIGYDRFRQAVVIPWFDTNGRLVNIKYRKVSSKVFWYEKDGKPIG 196
Query: 227 KWLYGLDDI--NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
+YGL + E EID +S AG + S + + + L
Sbjct: 197 DLIYGLHLAYRRNIKRAVYCEAEIDAMSFMTAGVFGLANGGSSFNERKAEQILKS----- 251
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL-GKDRCWRVRWPKKDEFSYFK 343
+ +++ D D G L +EL + L GK R FK
Sbjct: 252 -------------PIEELVIVADNDPAGEKLRKELEKYLKGKIRL------TNGYVRRFK 292
Query: 344 DANEVLKCLGPGALREVIENAELYQLHV 371
DAN L G +L V++N E +L +
Sbjct: 293 DANVALIKEGASSLVSVVDNVEPVRLKL 320
>gi|334118009|ref|ZP_08492099.1| DNA primase [Microcoleus vaginatus FGP-2]
gi|333459994|gb|EGK88604.1| DNA primase [Microcoleus vaginatus FGP-2]
Length = 672
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 111/275 (40%), Gaps = 72/275 (26%)
Query: 136 AGRAFAGSNKIRKVMSSRQVAEKS-----LGLEPLG-EKLIAYLGER------MISEGTL 183
A R G + + S RQ++E++ LG P G E L +YL E+ ++ + L
Sbjct: 133 ALRQTQGEEPLAYLKSERQLSEETIQQFQLGYAPQGWEALYSYLVEQKNYPAQLVEQAGL 192
Query: 184 Q--------------RNSVMQRLHDQAIAFPYWHNGVLVGCKYRSM---ERKFRQEKGTE 226
RN +M + D G ++G R++ + K+ TE
Sbjct: 193 IVPRKNGGSGYYDRFRNRIMIPIRDT--------QGRVIGFGGRALGDEQPKYLNSPETE 244
Query: 227 -----KWLYGLDD----INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
K L+ LD I++ ++VEG D +++ AG N V+ A R+L
Sbjct: 245 LFDKGKTLFALDTAKTAISKADRAVVVEGYFDAIALHAAGISNAVASLGTALSLNQVRQL 304
Query: 278 PPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKD 337
R D+ +IIL DAD G AE R +G+ ++ + +
Sbjct: 305 L-RYTDS---------------KQIILNFDADKAGTQAAE---RAIGE--IEKLAYQGEV 343
Query: 338 EFSYF-----KDANEVLKCLGPGALREVIENAELY 367
+ KDA+E LK P RE++ENA L+
Sbjct: 344 QLRVLNIPDGKDADEYLKTYSPEQYRELLENAPLW 378
>gi|302832674|ref|XP_002947901.1| hypothetical protein VOLCADRAFT_116604 [Volvox carteri f.
nagariensis]
gi|300266703|gb|EFJ50889.1| hypothetical protein VOLCADRAFT_116604 [Volvox carteri f.
nagariensis]
Length = 1167
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 245 EGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK---------------DTGYQYL 289
+GE+DKL++ AGF N VSVP+GAP S P E+ Y YL
Sbjct: 385 QGEMDKLALNAAGFWNVVSVPNGAPAATSASPSSPPEQLFVRPGERDQLRARVKLHYSYL 444
Query: 290 WNCKEHLDK---VSRIILGTDADTPGHALAEELARRLGKDRCWRV 331
+ L R L TD D G AL EL RRLG++RCW V
Sbjct: 445 DSFLMALPADVGRCRFTLATDNDPAGGALRRELLRRLGRERCWEV 489
>gi|354998570|gb|AER49896.1| gp57 [Mycobacterium phage LHTSCC]
Length = 219
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E +V I
Sbjct: 68 MAIPYLRWSREHGWIVVAIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALLREVPDVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQICGLP-AVGVPGANMWKPYMREL-----FIGYRTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A+ L R
Sbjct: 171 --ADGDEPGAEFANRVAQTLPNSRV 193
>gi|83571727|ref|YP_424979.1| putative DNA helicase [Enterobacteria phage K1E]
gi|83308178|emb|CAJ29410.1| gp9 protein [Enterobacteria phage K1E]
Length = 662
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 199 FPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI---NETAEV----------IIVE 245
+P + GVLVG K R++ + F+ G L+G+ D+ N + V +IV
Sbjct: 160 YPRYEKGVLVGAKCRTLPKDFK--FGHLGKLFGMQDLFGMNTLSHVLDKGRRKDCLLIVG 217
Query: 246 GEIDKLSVEEAGFQNCVSVP-SGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIIL 304
GE+D L+ ++ + G P V + ++ + + +EH+ + +II
Sbjct: 218 GELDALAAQQMLLDSAKGTKWEGQPYHV----WSANKGESCLEEIVQNREHIAQFKKIIW 273
Query: 305 GTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G D D G ++ A RL + + + +P S KDAN K L G +E ++
Sbjct: 274 GFDGDEVGQKQNQQAA-RLFPGKSYILEYP-----SGCKDAN---KALMAGKAKEFVD 322
>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
Length = 2579
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 207 LVGCKYRSMERK--FRQEKGTEKW-LYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCV 262
+V K RS+ K R +W L+G + A+ +++ EGE D +SV + V
Sbjct: 774 VVRVKARSISEKSCMRLLPAGGQWGLFGAATVPADADTLVLTEGEFDAMSVFQQTKVPAV 833
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
SVP GA LP Q L L++ +IIL D D G AE A +
Sbjct: 834 SVPMGA------HSLP-------VQVL----PFLERFKKIILWMDDDAAGREGAELFAAK 876
Query: 323 LGKDRCWRVR 332
LG RC VR
Sbjct: 877 LGIGRCHLVR 886
>gi|302858569|gb|ADL71315.1| gp55 [Mycobacterium phage Eagle]
Length = 170
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E +V I
Sbjct: 19 MAIPYLRWSREHGWIVVAIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALLREVPDVAI 78
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 79 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FIGYRTVYVL----------- 121
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A L R
Sbjct: 122 --ADGDEPGAEFANRVALTLPNSRV 144
>gi|147678499|ref|YP_001212714.1| DNA primase [Pelotomaculum thermopropionicum SI]
gi|146274596|dbj|BAF60345.1| DNA primase [Pelotomaculum thermopropionicum SI]
Length = 315
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 172 YLGERMISEGTLQRNSVM--QRLHDQAIAFPYW-HNGVLVGCKYRSMERK----FRQEKG 224
YL ER E QR + R H +A+ FP++ G LV K+RS+ K + +
Sbjct: 132 YLTERRGIEEKWQRAFRVGYDRKH-RAVTFPWYDRQGRLVNVKFRSVTDKRFWFYGDGQP 190
Query: 225 TEKWLYGLDDINETAE--VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREK 282
+Y L+ I + + +VE EID +++ +AGF P+ A + L PR++
Sbjct: 191 VGDHVYALNFIYKAGKRLAYVVESEIDAITLWQAGF------PAVA---LGGANLSPRQR 241
Query: 283 DTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLG 324
+ Q C +++ TD D G +A +A +LG
Sbjct: 242 ELIIQSPLEC---------LVVATDNDKAGRRIARTIAGQLG 274
>gi|237832029|ref|XP_002365312.1| helicase, putative [Toxoplasma gondii ME49]
gi|211962976|gb|EEA98171.1| helicase, putative [Toxoplasma gondii ME49]
Length = 1008
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 207 LVGCKYRSMERK--FRQEKGTEKW-LYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCV 262
+V K RS+ K R +W L+G + A+ +++ EGE D +SV + V
Sbjct: 427 VVRVKARSISEKSCMRLLPAGGQWGLFGAATVPADADTLVLTEGEFDAMSVFQQTKVPAV 486
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
SVP GA LP Q L L++ +IIL D D G AE A +
Sbjct: 487 SVPMGA------HSLP-------VQVL----PFLERFKKIILWMDDDAAGREGAELFAAK 529
Query: 323 LGKDRCWRVR 332
LG RC VR
Sbjct: 530 LGIGRCHLVR 539
>gi|148747808|ref|YP_001285774.1| DNA primase/helicase [Phormidium phage Pf-WMP3]
gi|146230041|gb|ABQ12449.1| DNA primase/helicase [Phormidium phage Pf-WMP3]
Length = 682
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 195 QAIAFPYW--HNGVLVGCKYRSMERKFRQEKGTEKWLY-----GLDDINETAE-VIIVEG 246
+A+ FPY+ LVG K R +E + R +GT K Y GL I ++ V+I EG
Sbjct: 44 EALVFPYYDLSTSKLVGFKLRDLEAESR--RGT-KVCYTTGKLGLFAIKRKSDTVVITEG 100
Query: 247 EIDKLSVEEAGFQ-NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILG 305
E D L++ + V +P + K+ L W ++H I L
Sbjct: 101 EPDALTLASVYRKYTVVGLPGSSTTKLVRENL-----------TW-LRQH----KHIYLC 144
Query: 306 TDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYF 342
D+D PG EEL L + ++V +KD Y
Sbjct: 145 LDSDEPGQLATEELISMLPGYKTYKVNLARKDANEYL 181
>gi|221506529|gb|EEE32146.1| pom1, putative [Toxoplasma gondii VEG]
Length = 1164
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 207 LVGCKYRSMERK--FRQEKGTEKW-LYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCV 262
+V K RS+ K R +W L+G + A+ +++ EGE D +SV + V
Sbjct: 427 VVRVKARSISEKSCMRLLPAGGQWGLFGAATVPADADTLVLTEGEFDAMSVFQQTKVPAV 486
Query: 263 SVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARR 322
SVP GA LP Q L L++ +IIL D D G AE A +
Sbjct: 487 SVPMGA------HSLP-------VQVL----PFLERFKKIILWMDDDAAGREGAELFAAK 529
Query: 323 LGKDRCWRVR 332
LG RC VR
Sbjct: 530 LGIGRCHLVR 539
>gi|282598660|ref|YP_003358757.1| gp54 [Mycobacterium phage Peaches]
gi|255928187|gb|ACU41805.1| gp54 [Mycobacterium phage Peaches]
Length = 219
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E +V I
Sbjct: 68 MAIPYLRWSREHGWIVVAIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALLREVPDVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FIGYRTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A L R
Sbjct: 171 --ADGDEPGAEFANRVALTLPNSRV 193
>gi|414087590|ref|YP_006987775.1| putative DNA helicase [Enterobacteria phage vB_EcoP_ACG-C91]
gi|383396020|gb|AFH19838.1| putative DNA helicase [Enterobacteria phage vB_EcoP_ACG-C91]
Length = 662
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 199 FPYWHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI---NETAEV----------IIVE 245
+P + GVLVG K R++ + F+ G L+G+ D+ N + V +IV
Sbjct: 160 YPRYEKGVLVGAKCRTLPKDFK--FGHLGKLFGMQDLFGMNTLSHVLDKGRRKDCLLIVG 217
Query: 246 GEIDKLSVEEAGFQNCVSVP-SGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIIL 304
GE+D L+ ++ + G P V + ++ + + +EH+ + +II
Sbjct: 218 GELDALAAQQMLLDSAKGTKWEGQPYHV----WSVNKGESCLEEIVQNREHIAQFKKIIW 273
Query: 305 GTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
G D D G ++ A RL + + + +P S KDAN K L G +E ++
Sbjct: 274 GFDGDEVGQKQNQQAA-RLFPGKSYILEYP-----SGCKDAN---KALMAGKAKEFVD 322
>gi|422023367|ref|ZP_16369872.1| P4 family phage/plasmid primase [Providencia sneebia DSM 19967]
gi|414094135|gb|EKT55805.1| P4 family phage/plasmid primase [Providencia sneebia DSM 19967]
Length = 818
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 198 AFPYWHNGVLVGCKYRSMERKFRQEKGTEKWL-----YGLDDINETAEVIIVEGEIDKLS 252
+P++ NG +V ++ ++ F+ ++ + WL YG + + + +VEGE D L+
Sbjct: 199 VYPHFDNGRIVRFTFKDPKKTFKYQQPKKYWLPEAHWYGQQTLEKPGTIALVEGENDALT 258
Query: 253 VEEAGFQNCVSVPSGA 268
+ EAG+ V G+
Sbjct: 259 LIEAGYTGPVLASIGS 274
>gi|342239813|gb|AEL19820.1| gp55 [Mycobacterium phage MeeZee]
Length = 219
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E +V I
Sbjct: 68 MAIPYLRWSREHGWIVVAIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALLREVPDVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FIGYRTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A L R
Sbjct: 171 --ADGDEPGAEFANRVALTLPNSRV 193
>gi|390013567|gb|AFL46661.1| gp55 [Mycobacterium phage ICleared]
Length = 219
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E +V I
Sbjct: 68 MAIPYLRWSREHGWIVVAIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALLREVPDVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FIGYRTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A L R
Sbjct: 171 --ADGDEPGAEFANRVALTLPNSRV 193
>gi|333495782|gb|AEF57374.1| gp55 [Mycobacterium phage Shaka]
gi|343197929|gb|AEM05931.1| gp55 [Mycobacterium phage TiroTheta9]
gi|390098481|gb|AFL47910.1| gp55 [Mycobacterium phage Flux]
gi|407437865|gb|AFU20623.1| gp55 [Mycobacterium phage Sabertooth]
Length = 219
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E +V I
Sbjct: 68 MAIPYLRWSREHGWIVVAIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALLREVPDVAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G V VP K REL GY+ ++
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGANMWKPYMREL-----FIGYRTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D PG A +A L R
Sbjct: 171 --ADGDEPGAEFANRVALTLPNSRV 193
>gi|194473820|ref|YP_002048644.1| DNA primase/helicase [Morganella phage MmP1]
gi|194307041|gb|ACF42023.1| DNA primase/helicase [Morganella phage MmP1]
Length = 575
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 203 HNGVLVGCKYRSMERKFRQE-KGTEKWLYGLDDINETAEVIIVEGEIDKLSVEE--AGFQ 259
NG ++ K R+ ++F K LY + ++I EGEID LSV + G
Sbjct: 121 QNGEIISQKIRAANKEFATRGKHKSDSLYLKHLWSGGKRIVITEGEIDALSVMQVQGGKW 180
Query: 260 NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEEL 319
VS+ SGA +V+ + L Y+YL D+ IIL D D G EE
Sbjct: 181 PVVSLGSGA--QVAKKTLSAN-----YEYL-------DQFEEIILMFDMDEAGRKAVEEA 226
Query: 320 ARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVI 361
A L + P +KDANE CL G +I
Sbjct: 227 APVLPAGKVKVAVLP-------YKDANE---CLVNGDTEAII 258
>gi|221486832|gb|EEE25078.1| pom1, putative [Toxoplasma gondii GT1]
Length = 568
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 227 KW-LYGLDDINETAEVIIV-EGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
+W L+G + A+ +++ EGE D +SV + VSVP GA LP
Sbjct: 9 QWGLFGAATVPADADTLVLTEGEFDAMSVFQQTKVPAVSVPMGA------HSLP------ 56
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVR 332
Q L L++ +IIL D D G AE A +LG RC VR
Sbjct: 57 -VQVL----PFLERFKKIILWMDDDAAGREGAELFAAKLGIGRCHLVR 99
>gi|145514790|ref|XP_001443300.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410678|emb|CAK75903.1| unnamed protein product [Paramecium tetraurelia]
Length = 416
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 207 LVGCKYRSM--ERKFRQE---KGTEKWLYGLDDIN-ETAEVIIVEGEIDKLSVEEAGFQN 260
LV CK R M E K+ Q+ K K ++GL+ + + ++I+ EGE D ++ +
Sbjct: 264 LVSCKLRGMGKENKYIQKIEPKNAMKGIFGLNLLTKDVKQIILTEGEFDAMAAYQMTGIP 323
Query: 261 CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELA 320
+S+P G P +L +++ I++ D D G + ++A
Sbjct: 324 SISLPYGIA------HFP--------NFLLEWINEYKELNNILVWVDDDDFGRVNSHKIA 369
Query: 321 RRLGKDRCWRVRWPKKDEFS---YFKDANEVLKCLGPGALREVIENA 364
++G W+ R + + Y KDAN+ L+ P ++E I +
Sbjct: 370 TKIGH---WKTRIIQPSSVNADQYPKDANDCLRYY-PDRVQEYISKS 412
>gi|167564998|ref|ZP_02357914.1| DNA primase [Burkholderia oklahomensis EO147]
Length = 497
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 240 EVIIVEGEIDKLSVEEAGFQN--CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLD 297
+VI+ EGEID LSV +A VSVP+GA K Q W L
Sbjct: 92 KVIVTEGEIDCLSVAQALSLKWPVVSVPNGAQGAA---------KSLAAQIEW-----LR 137
Query: 298 KVSRIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGAL 357
I+L D D PG A L R + P + KDAN++L+ GP A+
Sbjct: 138 GYEEIVLWFDNDDPGREAVAACAAILPPGRVKFITTPHE-----LKDANDLLREHGPKAV 192
Query: 358 REVIENAELYQ 368
+ A+ Y+
Sbjct: 193 VDATWEAKAYR 203
>gi|414090100|ref|YP_006990218.1| primase/helicase protein [Stenotrophomonas phage IME15]
gi|409995522|gb|AFV51455.1| primase/helicase protein [Stenotrophomonas phage IME15]
Length = 503
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG ++ K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 50 QNGSIISQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 106
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA Y+Y D+ +IIL D D G
Sbjct: 107 CKYPVVSLGHGAAAAKKTCA-------ANYEY-------FDQFEQIILMFDMDEAGRKAV 152
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 153 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 188
>gi|380886180|gb|AFF28364.1| gp54 [Mycobacterium phage Twister]
gi|402762251|gb|AFQ97364.1| gp56 [Mycobacterium phage Rebeuca]
Length = 219
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 32/145 (22%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WL+ L + E ++ I
Sbjct: 68 LAIPYLRWSREHGWIVVSVRYRCIQDHDHRGHGKYMTAPGDQPWLFNTLALMREVPDIAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRII 303
EGEID ++ + G +P+ P + RE GYQ ++
Sbjct: 128 TEGEIDAITTQVCG------IPAVGVPGAQMWQPYMRELFLGYQTVYVL----------- 170
Query: 304 LGTDADTPGHALAEELARRLGKDRC 328
D D G+ A +AR L R
Sbjct: 171 --ADGDDAGNDFANRVARTLPNSRV 193
>gi|315518940|dbj|BAJ51817.1| DNA primase/helicase-like protein [Ralstonia phage RSB2]
Length = 562
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
Query: 204 NGVLVGCKYRSMERKFR-QEKGTEKWLYGLDDINETAEVIIV-EGEIDKLSVEEAGFQN- 260
G L+G K R+ +++F K + L+G + + ++I++ EGEID +SV +
Sbjct: 114 TGALLGQKLRNKDKEFSCLGKVSRDHLWGSNLWSGKGKMIVITEGEIDAMSVSQLQGNKW 173
Query: 261 -CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEEL 319
VS+P+GA Y+YL D +I+L D D PG +E
Sbjct: 174 PVVSLPTGAKAAAKTLA-------ANYEYL-------DGYDKIVLMFDNDEPGQQAVQES 219
Query: 320 ARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQ 368
L + + + P KDAN L A+ + I NA Y+
Sbjct: 220 CEVLPAGKVFIAKLP-------LKDANACLIDGQGAAVMDAIWNASPYR 261
>gi|339752021|gb|AEJ92057.1| gp58 [Mycobacterium phage HelDan]
Length = 220
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E ++ I
Sbjct: 68 MAIPYLRWSKEHGWIVVSIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALMREVPDIAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
EGEID ++ + G V VP + K REL
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGASMWKPYMREL 160
>gi|339781591|gb|AEK07422.1| gp57 [Mycobacterium phage Rockstar]
Length = 220
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 197 IAFPY--W---HNGVLVGCKYRSMER-------KFRQEKGTEKWLYG-LDDINETAEVII 243
+A PY W H ++V +YR ++ K+ G + WLY L + E ++ I
Sbjct: 68 MAIPYLRWSKEHGWIVVSIRYRCIQDHDHRGHGKYMTAPGDQPWLYNTLALMREVPDIAI 127
Query: 244 VEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNREL 277
EGEID ++ + G V VP + K REL
Sbjct: 128 TEGEIDAITAQVCGLP-AVGVPGASMWKPYMREL 160
>gi|326923873|ref|XP_003208157.1| PREDICTED: twinkle protein, mitochondrial-like, partial [Meleagris
gallopavo]
Length = 441
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 37/185 (20%)
Query: 164 PLGEKL--------IAYLGERMISEGTLQRNSVMQRLHDQAIAFPYW--HNGVLVGCKYR 213
PLGE L A G ++ TL+R V +A+ FP++ + L G K
Sbjct: 73 PLGELLDEEETQTTKAAFGITPLANSTLKRFGVRYLRAAKALVFPWFAPRDAALRGLKLL 132
Query: 214 SMERKFRQEKGTEKW---------LYGLDDINE-TAEVIIVEGEIDKLSVEEAGFQNCVS 263
E++ TE+ L+GL I EV++ E+D L++ +A C++
Sbjct: 133 VAEQQGEAVSYTEETFPRFDAYRNLFGLPLIGRRDTEVVLTGRELDALALHQATGVPCLA 192
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
+P GA LPP +L++ R+ L D A+ AR+L
Sbjct: 193 LPRGA------TILPP-----------ALLPYLEQFRRVTLWLGDDLRSWEAAKLFARKL 235
Query: 324 GKDRC 328
RC
Sbjct: 236 NPKRC 240
>gi|312142472|ref|YP_003993918.1| DNA primase catalytic core domain [Halanaerobium hydrogeniformans]
gi|311903123|gb|ADQ13564.1| DNA primase catalytic core domain [Halanaerobium hydrogeniformans]
Length = 1042
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 202 WHNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNC 261
W G S +RK+ + L+G+D ++ T +II EG D ++ +AG+ +C
Sbjct: 228 WERGKYKKLLTHSDKRKYISSVVKNEHLFGVDSLSNTEALIITEGITDAITTIQAGY-SC 286
Query: 262 VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELAR 321
+S P V R+KD Y+ L + E K+ I+ + G A E AR
Sbjct: 287 IS-----PVTVQ-----FRKKD--YKKLESIAEKAKKI-YIVNDNEESGAGRKGALETAR 333
Query: 322 RLGKD--RCWRVRWPKKDEFS------YFKDANE 347
L K + + V PK +E S Y+KD N+
Sbjct: 334 YLHKKGHKVYIVELPKPEEVSKIDLADYWKDHNK 367
>gi|297618091|ref|YP_003703250.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297145928|gb|ADI02685.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 692
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 156 AEKSLGLEPLGEKLIAYLGERMISEGTLQR---NSVMQRL---HDQAIAFPYWHNGVLVG 209
+E + L P E + YL R I+ L R V + ++ I P+ NG +VG
Sbjct: 146 SEAAKMLSPDLEIVQEYLAARGINYELLTRYRWGYVPEGFVPGQEECIVVPFIVNGQVVG 205
Query: 210 CKYRSMERKFRQEKGTEKWLYGLDDINETAEVIIVEGEIDKLSVEEAGFQNC-VSVPSGA 268
+ R+ + + KG+ L+ L + + +IVEGE D L +A ++C + VP +
Sbjct: 206 IRGRARDGRKGGAKGSRFVLWNLGALEGHDQAVIVEGESDALRTIQA-LESCGIDVPVLS 264
Query: 269 PPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPG-HALAEELARRLGKDR 327
P + R RE + +Q + + L AD P + + LG R
Sbjct: 265 VPGATFR----REWEREFQ----------GIHTVYLIPQADDPSWNNFVANAVKVLGDYR 310
Query: 328 CWRVRWPKK 336
C V+ P K
Sbjct: 311 CVVVKLPWK 319
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,227,807,787
Number of Sequences: 23463169
Number of extensions: 265423450
Number of successful extensions: 580747
Number of sequences better than 100.0: 366
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 580148
Number of HSP's gapped (non-prelim): 388
length of query: 380
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 236
effective length of database: 8,980,499,031
effective search space: 2119397771316
effective search space used: 2119397771316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)