BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042101
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03692|PRIM_BPT7 DNA primase/helicase OS=Enterobacteria phage T7 GN=4 PE=1 SV=1
Length = 566
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEK--WLYGLDDINETAEVIIVEGEIDKLSVEEAGFQN 260
NG +V K R ++ F+ G+ K L+G N ++++ EGEID L+V E Q+
Sbjct: 114 QNGNIVSQKVRDKDKNFKT-TGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQD 170
Query: 261 C----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALA 316
C VS+ GA +K Y E+ D+ +IIL D D G
Sbjct: 171 CKYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDEAGRKAV 216
Query: 317 EELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362
EE A+ L + P KDANE C G RE++E
Sbjct: 217 EEAAQVLPAGKVRVAVLP-------CKDANE---CHLNGHDREIME 252
>sp|Q5ZIW1|PEO1_CHICK Twinkle protein, mitochondrial OS=Gallus gallus GN=PEO1 PE=2 SV=1
Length = 669
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 37/189 (19%)
Query: 164 PLGEKL--------IAYLGERMISEGTLQRNSVMQRLHDQAIAFPYW--HNGVLVGCKYR 213
PLGE L A G +++GTL+R V +A+ FP++ + L G K
Sbjct: 169 PLGELLDEEETRATKAAFGIAPLADGTLKRFGVRYLRAAKALVFPWFAPRDAALRGLKLL 228
Query: 214 SMERKFRQEKGTEKWL---------YGLDDINE-TAEVIIVEGEIDKLSVEEAGFQNCVS 263
E++ TE+ L +GL I AEV++ E+D L++ +A C++
Sbjct: 229 VAEQRGDAVSYTEETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALALHQATGVPCLA 288
Query: 264 VPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRL 323
+P GA LPP +L++ R+ L D ++ AR+L
Sbjct: 289 LPRGA------TILPP-----------ALLPYLEQFRRVTLWLGDDLRSWEASKLFARKL 331
Query: 324 GKDRCWRVR 332
RC V+
Sbjct: 332 NPKRCSLVQ 340
>sp|P33655|PRIM_CLOAB DNA primase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaG PE=3
SV=1
Length = 596
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 63/263 (23%)
Query: 135 WAGRAFAGSNKIRKVMSSRQVAEKSLGLEPLG------EKLIAYLGERMISEGTL----- 183
+ R ++K +K R + +K++ LG +L++++ + +E L
Sbjct: 126 YFFRNLDSNSKAKKYFLDRGINQKTMRRFGLGYAKDDWRQLLSFMKSKGYTELELIEAGL 185
Query: 184 --QRN-SVMQRLHDQAIAFPYW-HNGVLVGC----------KYRSMERKFRQEKGTEKWL 229
Q+N +V R ++ I FP + + G ++G KY + +KGT L
Sbjct: 186 IVQKNKAVYDRFRNRVI-FPVFDYKGKVIGFGGRVLDDSKPKYLNSPETKIFKKGTN--L 242
Query: 230 YGLD-----DINETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDT 284
YGL+ +I +T +IIVEG +D +S+ + G N V+ A K + L
Sbjct: 243 YGLNFAVKNNIGDT--IIIVEGYMDCISLHQYGINNVVASLGTALTKDQAKLLKRY---- 296
Query: 285 GYQYLWNCKEHLDKVSRIILGTDADTPGHALA---EELARRLGKDRCWRVRWPKKDEFSY 341
S++++ DADT G A ++ R G D ++ P
Sbjct: 297 --------------ASKVVISYDADTAGQAATLRGFDILREAGFD-IKIIKIPDG----- 336
Query: 342 FKDANEVLKCLGPGALREVIENA 364
KD +E ++ G A ++ENA
Sbjct: 337 -KDPDEFVRKNGKEAFMRLVENA 358
>sp|P20315|PRIM_BPT3 DNA primase/helicase OS=Enterobacteria phage T3 GN=4 PE=3 SV=1
Length = 566
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 21/140 (15%)
Query: 203 HNGVLVGCKYRSMERKFRQEKGTEKWLYGLDDI-NETAEVIIVEGEIDKLSVEEAGFQNC 261
NG +V K R ++ F+ + L + + ++++ EGEID L+V E Q+C
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVME--LQDC 170
Query: 262 ----VSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAE 317
VS+ GA +K Y E+ D+ +IIL D D G E
Sbjct: 171 KYPVVSLGHGASAA---------KKTCAANY-----EYFDQFEQIILMFDMDDAGRKAVE 216
Query: 318 ELARRLGKDRCWRVRWPKKD 337
E A+ L + P KD
Sbjct: 217 EAAQVLPAGKVRVAVLPCKD 236
>sp|Q9RWR5|PRIM_DEIRA DNA primase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=dnaG PE=3 SV=1
Length = 571
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 150 MSSRQVAEKSLGLEPLG-EKLIAYLGERMISE------GTLQRNSVMQRLHDQA---IAF 199
+S +A LG P G + L+ + +SE G L N R++D+ + F
Sbjct: 117 LSDETIAAFELGYAPDGWDGLLKLARTKGVSEKQLLEAGLLTENPENGRVYDRFRGRVMF 176
Query: 200 PYW-HNGVLVGCKYRSMER---KFRQEKGTEKW-----LYGLDD----INETAEVIIVEG 246
P H G LVG R ++ K+ T + LYGLD + AE+++VEG
Sbjct: 177 PIRDHLGRLVGFGGRVLDDSKPKYLNTPETAAFKKGELLYGLDKARSGLGGGAELVVVEG 236
Query: 247 EIDKLSVEEAGFQNCVS 263
+D +S+ + GF V+
Sbjct: 237 YMDVISMHQHGFTGAVA 253
>sp|Q8CIW5|PEO1_MOUSE Twinkle protein, mitochondrial OS=Mus musculus GN=Peo1 PE=2 SV=1
Length = 685
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 41/178 (23%)
Query: 173 LGERMISEGTLQRNSVMQRLHDQAIAFPYWHNGV--LVGCKYRSMERKFRQEKGTEKW-- 228
G +++ TL+R SV +++ FP++ G L G K E QE G +
Sbjct: 181 FGLTKVTDDTLRRFSVRYLRSARSLVFPWFTPGSSGLRGLKLLGAEG---QENGVQYVET 237
Query: 229 ----------LYGLDDINE-TAEVIIVEGEIDKLSVEEAGFQNCVSVPSGA---PPKVSN 274
L+GL I+ EV++ E+D L++ ++ +S+P G PP +
Sbjct: 238 TIPRPGVYHNLFGLPLISRRDTEVVVTSRELDSLALSQSTGLPTLSLPRGTVCLPPAL-- 295
Query: 275 RELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELARRLGKDRCWRVR 332
LP +L++ RI+ D A+ AR+L RC VR
Sbjct: 296 --LP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR 335
>sp|Q9PM37|PRIM_CAMJE DNA primase OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=dnaG PE=3 SV=1
Length = 605
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 22/144 (15%)
Query: 147 RKVMSSRQVAEKSLGLEPLGEKLIAYLGERMI------SEGTLQR--NSVMQRLHDQAIA 198
++ ++ + +A+ LG E I L + I S G L++ N+ I
Sbjct: 134 QRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDAMSVGALKKDENNEFYASFIWRIT 193
Query: 199 FP-YWHNGVLVG-----------CKYRSMERKFRQEKGTEKWLYGL--DDINETAEVIIV 244
FP Y H +LVG KY + + +K + + + ++I + E+I+
Sbjct: 194 FPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVC 253
Query: 245 EGEIDKLSVEEAGFQNCVSVPSGA 268
EG +D ++ +AGF N V+V A
Sbjct: 254 EGYMDAIAFHKAGFNNAVAVLGTA 277
>sp|O64248|VG57_BPMD2 Gene 57 protein OS=Mycobacterium phage D29 GN=57 PE=4 SV=1
Length = 152
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 36/179 (20%)
Query: 192 LHDQAIAFPY-----WHNGVLVGCKYRSMER---KFRQEKGTEKWLYGLDDINETA-EVI 242
++ +A PY W N + +YR ++ K+ G + LY + + ++
Sbjct: 1 MYRGCLAIPYMRWSPWRNWSVAAIRYRRLDDGKPKYMTMPGDKPRLYNTVALTRYSRDMA 60
Query: 243 IVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRI 302
I EGEID ++ E G V VP K REL GY+ +
Sbjct: 61 ITEGEIDAITAELCGIPT-VGVPGAQMWKPHFREL-----FLGYR-------------NV 101
Query: 303 ILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVI 361
+ D D PG A+ +A+ L R + P+ + D N ++ G AL E I
Sbjct: 102 NILADGDEPGMEFAKSVAKTLPNARI--IPMPEGE------DVNSLVTSQGKDALLERI 152
>sp|A6UPT0|Y596_METVS UPF0095 protein Mevan_0596 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0596 PE=3 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 23/112 (20%)
Query: 241 VIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVS 300
+IIVEG D L++ G +N ++V + PK + E+ ++ T +
Sbjct: 171 IIIVEGRADVLTLLRCGIKNAIAVEGTSVPK-TIMEISKKKTTTAF-------------- 215
Query: 301 RIILGTDADTPGHALAEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCL 352
TD D G + +EL + D R + K+ E + K E++KCL
Sbjct: 216 -----TDGDRGGELILKELLQTCDIDYVSRAPYGKEVEGTSKK---EIMKCL 259
>sp|A3DMX9|Y889_STAMF UPF0095 protein Smar_0889 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=Smar_0889 PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 235 INETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKE 294
++E+ +IIVEG D +++ GF N +++ GA R++P N +
Sbjct: 162 VDESDTIIIVEGRADVINLLRYGFTNVIAL-GGA------RKVP------------NTIK 202
Query: 295 HLDKVSRIILGTDADTPGHALAEELARRLGKDRCWR 330
+L K ++I+ D D G + +EL R + D R
Sbjct: 203 NLAKKKKVIVFLDGDHGGDLILKELLRTIKVDFIAR 238
>sp|Q9C0U6|XKS1_SCHPO Xylulose kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=xks1 PE=3 SV=1
Length = 555
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 335 KKDEFSYFKDANEVLKCLGPGALREVIENAELYQLHVSEEA 375
+K + F E+L +GPG R I+ ELYQ+ EE+
Sbjct: 374 EKKQLGLFYPQREILPAVGPGTWRFAIQGTELYQVDKDEES 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,470,920
Number of Sequences: 539616
Number of extensions: 6399894
Number of successful extensions: 14408
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14402
Number of HSP's gapped (non-prelim): 19
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)