Query 042101
Match_columns 380
No_of_seqs 245 out of 1742
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2au3_A DNA primase; zinc ribbo 100.0 7.3E-43 2.5E-47 351.7 19.4 262 74-374 16-358 (407)
2 1nui_A DNA primase/helicase; z 100.0 3.7E-36 1.3E-40 284.7 17.3 238 91-362 9-255 (255)
3 4edg_A DNA primase; catalytic 100.0 6.2E-32 2.1E-36 264.0 14.6 185 163-372 26-265 (329)
4 1dd9_A DNA primase, DNAG; topr 100.0 4.7E-31 1.6E-35 259.0 17.9 187 163-374 38-280 (338)
5 1q57_A DNA primase/helicase; d 99.9 4.7E-28 1.6E-32 249.3 11.8 186 168-374 13-204 (503)
6 1d0q_A DNA primase; zinc-bindi 99.3 2.4E-12 8.2E-17 105.1 4.6 62 66-141 5-72 (103)
7 1t6t_1 Putative protein; struc 98.8 4.5E-09 1.5E-13 87.4 6.8 71 239-329 21-92 (118)
8 2fcj_A Small toprim domain pro 98.2 1.2E-05 4E-10 66.9 11.5 104 238-369 4-109 (119)
9 1vdd_A Recombination protein R 93.2 0.49 1.7E-05 43.1 9.9 90 237-333 78-168 (228)
10 3j21_i 50S ribosomal protein L 91.5 0.15 5.1E-06 39.2 3.6 27 96-135 35-61 (83)
11 4a17_Y RPL37A, 60S ribosomal p 91.0 0.15 5.2E-06 40.6 3.2 27 96-135 36-62 (103)
12 3iz5_m 60S ribosomal protein L 90.7 0.17 5.9E-06 39.6 3.2 27 96-135 36-62 (92)
13 3izc_m 60S ribosomal protein R 89.9 0.19 6.5E-06 39.4 2.9 27 96-135 36-62 (92)
14 3vdp_A Recombination protein R 89.9 1.6 5.3E-05 39.4 9.3 90 237-333 92-184 (212)
15 3cc2_Z 50S ribosomal protein L 88.7 0.31 1.1E-05 39.7 3.4 27 96-135 60-86 (116)
16 1ffk_W Ribosomal protein L37AE 87.7 0.35 1.2E-05 36.3 2.9 27 96-135 27-53 (73)
17 1vq8_Z 50S ribosomal protein L 87.3 0.44 1.5E-05 36.7 3.3 27 96-135 27-53 (83)
18 3jyw_9 60S ribosomal protein L 86.1 0.13 4.4E-06 38.6 -0.2 27 96-135 26-52 (72)
19 1wii_A Hypothetical UPF0222 pr 83.1 0.98 3.3E-05 34.9 3.5 34 96-138 23-58 (85)
20 1k81_A EIF-2-beta, probable tr 62.8 4.9 0.00017 25.7 2.4 32 98-139 2-33 (36)
21 2g2k_A EIF-5, eukaryotic trans 58.0 14 0.00047 32.1 5.1 54 65-140 79-132 (170)
22 2gai_A DNA topoisomerase I; zi 57.7 27 0.00091 36.4 8.3 86 239-325 6-102 (633)
23 2e9h_A EIF-5, eukaryotic trans 53.8 12 0.0004 32.1 4.0 36 97-140 104-139 (157)
24 1nee_A EIF-2-beta, probable tr 48.3 8.5 0.00029 32.2 2.2 50 66-139 86-135 (138)
25 1pft_A TFIIB, PFTFIIBN; N-term 47.7 13 0.00044 25.0 2.7 28 96-135 5-32 (50)
26 3j20_Y 30S ribosomal protein S 45.9 16 0.00055 25.0 3.0 27 96-135 19-45 (50)
27 2d74_B Translation initiation 44.3 8.6 0.0003 32.6 1.6 52 65-140 87-138 (148)
28 3j21_g 50S ribosomal protein L 40.7 12 0.00041 25.9 1.6 27 96-140 14-40 (51)
29 4ddu_A Reverse gyrase; topoiso 39.5 59 0.002 36.1 7.8 41 294-334 655-697 (1104)
30 1qyp_A RNA polymerase II; tran 37.1 34 0.0012 23.6 3.6 34 95-136 14-52 (57)
31 1i7d_A DNA topoisomerase III; 34.6 35 0.0012 35.7 4.8 41 294-334 90-135 (659)
32 2zkr_2 60S ribosomal protein L 33.8 12 0.00041 29.3 0.8 26 95-136 15-40 (97)
33 1mw9_X DNA topoisomerase I; de 33.6 68 0.0023 33.1 6.7 41 294-334 98-140 (592)
34 2k4x_A 30S ribosomal protein S 33.0 20 0.00069 25.0 1.8 28 96-136 18-45 (55)
35 1gku_B Reverse gyrase, TOP-RG; 31.7 44 0.0015 36.9 5.2 39 296-334 620-659 (1054)
36 1twf_I B12.6, DNA-directed RNA 29.9 35 0.0012 27.6 3.1 32 97-139 5-38 (122)
37 2gmg_A Hypothetical protein PF 28.4 40 0.0014 26.8 3.0 48 67-117 45-102 (105)
38 1dl6_A Transcription factor II 28.1 19 0.00065 25.3 1.0 28 96-135 11-38 (58)
39 3ga8_A HTH-type transcriptiona 27.8 37 0.0013 24.9 2.7 10 125-136 36-45 (78)
40 3jv1_A P22 protein; MAM33 fami 26.4 32 0.0011 29.9 2.3 19 167-185 139-157 (182)
41 1yqf_A Hypothetical protein LM 26.2 31 0.0011 30.4 2.3 19 167-185 160-178 (203)
42 2fiy_A Protein FDHE homolog; F 26.0 49 0.0017 31.3 3.8 37 94-139 180-220 (309)
43 2js4_A UPF0434 protein BB2007; 26.0 51 0.0017 24.1 3.0 32 96-140 8-39 (70)
44 1p32_A Mitochondrial matrix pr 24.7 35 0.0012 30.2 2.3 19 167-185 164-182 (209)
45 2hf1_A Tetraacyldisaccharide-1 22.6 55 0.0019 23.8 2.6 32 96-140 8-39 (68)
46 2jr6_A UPF0434 protein NMA0874 21.6 57 0.0019 23.7 2.5 32 96-140 8-39 (68)
47 1tfi_A Transcriptional elongat 21.3 1E+02 0.0034 20.9 3.6 33 96-136 9-46 (50)
48 1l8d_A DNA double-strand break 20.9 28 0.00096 27.3 0.8 9 96-104 47-55 (112)
No 1
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=7.3e-43 Score=351.69 Aligned_cols=262 Identities=20% Similarity=0.262 Sum_probs=198.8
Q ss_pred HHHHHHHhCCccccCCCCCceeeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccccCCc--------c
Q 042101 74 VKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSN--------K 145 (380)
Q Consensus 74 ~~~~l~~~gi~~~~~~~~G~~~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~~~~~--------e 145 (380)
|.+++.++ +++++ .|++|+++||||++ |+|||+|++++ |.||||+ ||.+||+++.-. |
T Consensus 16 I~dvi~~~-v~lkk---~G~~~~~~CPfh~e------ktpSf~V~~~k--~~~~CFg--Cg~gGd~i~fv~~~~~~sf~e 81 (407)
T 2au3_A 16 IVDVISEY-LNLEK---VGSNYRTNCPFHPD------DTPSFYVSPSK--QIFKCFG--CGVGGDAIKFVSLYEDISYFE 81 (407)
T ss_dssp HHHHHHHH-SCCEE---ETTEEEECCSSSCC------SSCCEEEETTT--TEEEETT--TCCEECHHHHHHHHHTCCHHH
T ss_pred HHHHHHHh-ccccc---CCCeEEeeCcCCCC------CCCeEEEECCC--CEEEECC--CCCCCCHHHHHHHHhCCCHHH
Confidence 45667666 88887 89999999999985 78999998764 8999999 999999985211 1
Q ss_pred c------------hhcc-chh-hh---hhh--c-c-CCCcccHHHHHHHHhCCCCHHHHhhcceEEecC-----------
Q 042101 146 I------------RKVM-SSR-QV---AEK--S-L-GLEPLGEKLIAYLGERMISEGTLQRNSVMQRLH----------- 193 (380)
Q Consensus 146 ~------------~~~~-~~~-~~---~~~--~-~-~~~pl~~~~~~YL~~RGIs~eti~~f~~g~~~~----------- 193 (380)
+ .... ..+ +. .+. . + .....+..+.+||.+|||+.+++++|++||.++
T Consensus 82 Av~~La~~~gi~~~~~~~~~~~~l~~~~~~a~~~~~~~L~~~~~a~~YL~~RGi~~~~i~~f~lGyap~~~~l~~~l~~~ 161 (407)
T 2au3_A 82 AALELAKRYGKKLDLEKISKDEKVYVALDRVCDFYRESLLKNREASEYVKSRGIDPKVARKFDLGYAPSSEALVKVLKEN 161 (407)
T ss_dssp HHHHHHHHHTCCCCTTSCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHTTCEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHcCCCHHHHHHhCCCCCCchHHHHHHHHhc
Confidence 0 0000 000 00 000 0 0 001135678999999999999999999998653
Q ss_pred -----------------C-------cEEEEE-ecCCCEEEEEeee-cCC---Ccccccc-----CCCCccccccccC---
Q 042101 194 -----------------D-------QAIAFP-YWHNGVLVGCKYR-SME---RKFRQEK-----GTEKWLYGLDDIN--- 236 (380)
Q Consensus 194 -----------------g-------~~I~fP-~~~~G~vv~~~~R-~~~---Kkf~~~~-----~~~~~Lfgl~~i~--- 236 (380)
| ++|+|| +|.+|++++|++| .++ .||.+.+ .++..|||++.+.
T Consensus 162 ~~~~~~l~~~Gl~~~~~g~~~d~f~~ri~fPi~d~~G~vigf~gRr~l~~~~pKylnspet~~f~k~~~lygl~~a~~~i 241 (407)
T 2au3_A 162 DLLEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKGENLFGLYEAKEYI 241 (407)
T ss_dssp TCHHHHHTTTCEECSSTTCCEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSSCCGGGCEETHHHHHHHH
T ss_pred CCCHHHHHHCCceEecCCCcccccCCeEEEEEECCCCCEEEEEEEEecCCCCCeeecCCCCCCCCCCccccChHHHHHHh
Confidence 1 389999 5799999999999 774 4677643 3567899998653
Q ss_pred -CCCEEEEEechhHHHHHHHhCCCcEEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhcCCC-CeEEEEeCCChhhHH
Q 042101 237 -ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKV-SRIILGTDADTPGHA 314 (380)
Q Consensus 237 -~~~~iiIvEG~~DaLSl~q~G~~~~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L~~~-~~Ivl~~DnD~AG~~ 314 (380)
+.+.|+||||++||||++|+|+.++|+.. |+.. + .+++.+|.+. ++|+||+|||.||++
T Consensus 242 ~~~~~viivEG~~Dvlsl~q~G~~n~VA~l-Gtal--t----------------~~~~~~L~r~~~~vil~~D~D~AG~~ 302 (407)
T 2au3_A 242 KEEGFAILVEGYFDLLRLFSEGIRNVVAPL-GTAL--T----------------QNQANLLSKFTKKVYILYDGDDAGRK 302 (407)
T ss_dssp HHHTCEEECSSHHHHHHHHHTTCCSEEEES-SSSC--C----------------HHHHHHHHTTCSEEEEECCSSHHHHH
T ss_pred ccCCeEEEEechHhHHHHHHCCCCcEEEcC-cccC--C----------------HHHHHHHHhcCCeEEEEEcCCHHHHH
Confidence 46789999999999999999999988764 5531 1 0245566555 799999999999999
Q ss_pred HHHHHHHHhC--CCceEEEEcCCCCCCCCCCCHHHHHHhcChHHHHHHHHhccCCCccchhh
Q 042101 315 LAEELARRLG--KDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQLHVSEE 374 (380)
Q Consensus 315 aa~~la~~L~--~~~v~iv~lP~~~~~~~~KD~ND~L~~~g~~~l~~~i~~A~~~~~~~~~~ 374 (380)
||.++++.|. ..+++++.+|+ +|||||+|+++|.++|+++|++|.|+..-.+..
T Consensus 303 Aa~r~~~~l~~~g~~~~v~~lP~------gkDpdd~l~~~g~~~~~~~l~~a~~~~~~~~~~ 358 (407)
T 2au3_A 303 AMKSAIPLLLSAGVEVYPVYLPE------GYDPDEFIKEFGKEELRRLINSSGELFETLIKT 358 (407)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCT------TCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCC------CCChHHHHHhcCHHHHHHHHHcCCCHHHHHHHH
Confidence 9999988874 23678888986 499999999999999999999999876544443
No 2
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=100.00 E-value=3.7e-36 Score=284.71 Aligned_cols=238 Identities=23% Similarity=0.226 Sum_probs=171.2
Q ss_pred CCceeeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccccCCccchhcc---chhhhhhhccCCCcccH
Q 042101 91 PGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAFAGSNKIRKVM---SSRQVAEKSLGLEPLGE 167 (380)
Q Consensus 91 ~G~~~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~~~~~e~~~~~---~~~~~~~~~~~~~pl~~ 167 (380)
+...+++.||.||+ +| .|++|.+ |.|+||+ ||+++.......+..+.. ..++...+.+.+.|..
T Consensus 9 ~~~~~~~~CP~Cg~---~d----~~~~~~d---g~~~C~~--Cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 75 (255)
T 1nui_A 9 SVFLYHIPCDNCGS---SD----GNSLFSD---GHTFCYV--CEKWTAGNEDTKERASKRKPSGGKPGTYNVWNFGESN- 75 (255)
T ss_dssp -CEEEEECCSSSCC---SS----CEEEETT---SCEEETT--TCCEEC----CHHHHHTTCCCCBSTTCBCCBCGGGTT-
T ss_pred cceecCCcCCCCCC---CC----CceEeCC---CCeeccc--CCCcCCCccccccccccccCccccccccccccccccH-
Confidence 34456999999997 33 4888843 5699999 998754321111110000 0000000111222322
Q ss_pred HHHHHHHhCCCCHHHHhhcceEEec-CCc-EEEEEe-cCCCEEEEEeeecCCCcccc-ccCCCCccccccccCCCCEEEE
Q 042101 168 KLIAYLGERMISEGTLQRNSVMQRL-HDQ-AIAFPY-WHNGVLVGCKYRSMERKFRQ-EKGTEKWLYGLDDINETAEVII 243 (380)
Q Consensus 168 ~~~~YL~~RGIs~eti~~f~~g~~~-~g~-~I~fP~-~~~G~vv~~~~R~~~Kkf~~-~~~~~~~Lfgl~~i~~~~~iiI 243 (380)
.+.+||.+|||+.+++++|++++.. +|+ .|+||+ +.+|++++|++|..+++|.+ .++++..|||++.+.+.+.|+|
T Consensus 76 ~~~~YL~~RGi~~~~i~~f~~~~~~~~g~~~i~fp~~d~~G~vvg~~~R~~~~~~Ky~~s~k~~~lyg~~~~~~~~~v~i 155 (255)
T 1nui_A 76 GRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVV 155 (255)
T ss_dssp CBCCCBGGGTBCHHHHHHHTEEEEEETTEEEEEEEEECTTSCEEEEEEECTTCCCEEEECCCTTCCTTGGGCCCBSCCEE
T ss_pred HHHHHHHHcCCCHHHHHHhCeEEEccCCcEEEEEEEECCCCCEEEEEEECCCCCceEecCCCCccccCccccCCCCEEEE
Confidence 4689999999999999999999864 344 799995 79999999999997765533 3446778999998776788999
Q ss_pred EechhHHHHHHHh-CCCc-EEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhcCCCCeEEEEeCCChhhHHHHHHHHH
Q 042101 244 VEGEIDKLSVEEA-GFQN-CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELAR 321 (380)
Q Consensus 244 vEG~~DaLSl~q~-G~~~-~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L~~~~~Ivl~~DnD~AG~~aa~~la~ 321 (380)
|||++|+||++|+ |+.+ +++++++... ..++|++++.+|.++++||||+|||.||++|++++++
T Consensus 156 ~EG~~Dals~~~~~g~~~~v~slg~~~~~--------------~~~~l~~~~~~l~~~~~iil~~D~D~aG~~aa~~~~~ 221 (255)
T 1nui_A 156 TEGEIDMLTVMELQDCKYPVVSLGHGASA--------------AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ 221 (255)
T ss_dssp ESSHHHHHHHHHHHTTCSCEECCTTTTTT--------------HHHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHhhCCCcEEEECCCccch--------------hHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999 7644 4544333221 1234555667788889999999999999999999999
Q ss_pred HhCCCceEEEEcCCCCCCCCCCCHHHHHHhcChHHHHHHHH
Q 042101 322 RLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIE 362 (380)
Q Consensus 322 ~L~~~~v~iv~lP~~~~~~~~KD~ND~L~~~g~~~l~~~i~ 362 (380)
.|...+++++.+| + |||||+|+++|.++|+++|+
T Consensus 222 ~l~~~~v~~~~~p-~------kD~nd~l~~~g~~~~~~~i~ 255 (255)
T 1nui_A 222 VLPAGKVRVAVLP-C------KDANECHLNGHDREIMEQVW 255 (255)
T ss_dssp HSCTTTEEECCCS-S------SSHHHHHTTTTHHHHHHHHC
T ss_pred hccCCCEEEEeCC-C------CCHHHHHHhcCHHHHHHHhC
Confidence 9975578887777 3 99999999999999999873
No 3
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=99.97 E-value=6.2e-32 Score=263.97 Aligned_cols=185 Identities=22% Similarity=0.341 Sum_probs=151.5
Q ss_pred CcccHHHHHHHHhCCCCHHHHhhcceEEecC------------------------------C--------cEEEEEe-cC
Q 042101 163 EPLGEKLIAYLGERMISEGTLQRNSVMQRLH------------------------------D--------QAIAFPY-WH 203 (380)
Q Consensus 163 ~pl~~~~~~YL~~RGIs~eti~~f~~g~~~~------------------------------g--------~~I~fP~-~~ 203 (380)
+|.+..+++||.+|||+++++++|++||+++ | +|||||+ |.
T Consensus 26 ~~~g~~a~~YL~~Rgl~~e~i~~f~lGyap~~~~~l~~~l~~~g~~~~~l~~~GL~~~~~~g~~~yd~Fr~Ri~fPI~d~ 105 (329)
T 4edg_A 26 TVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNA 105 (329)
T ss_dssp SSTTHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHHHTTCCHHHHHHTTSEEEETTTTEEEESCCSEEEEEEECT
T ss_pred CcccHHHHHHHHHcCCCHHHHHhCCeeeccCcHHHHHHHHHHCCCCHHHHHHCCCeEECCCCCccccccCCEEEEEEECC
Confidence 4667789999999999999999999999742 2 2899994 79
Q ss_pred CCEEEEEeeecCC---CccccccC-----CCCccccccccC----CCCEEEEEechhHHHHHHHhCCCcEEEcCCCCCCC
Q 042101 204 NGVLVGCKYRSME---RKFRQEKG-----TEKWLYGLDDIN----ETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPK 271 (380)
Q Consensus 204 ~G~vv~~~~R~~~---Kkf~~~~~-----~~~~Lfgl~~i~----~~~~iiIvEG~~DaLSl~q~G~~~~Vs~~~Ga~~~ 271 (380)
+|++|+|++|.++ .||.+.+. ++..|||++.++ +.+.||||||+|||||++|+|+.|+|++ .|+..+
T Consensus 106 ~G~vigF~gR~l~~~~pKYlNspet~~f~K~~~Lygl~~a~~~i~~~~~vivvEG~~Dvial~q~Gi~naVA~-lGTalt 184 (329)
T 4edg_A 106 QGRIVGYSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVAT-MGTQLS 184 (329)
T ss_dssp TSCEEEEEEECSSSCSSSEEECCCCSSCCTTTCCBTHHHHHHHHHHHTCEEEESCHHHHHHHHHHTCCSEEEC-SSSCCC
T ss_pred CCCEEEEEeEECCCCCCeEeCCCCcccccccchhccHHHHHHHhccCCcEEEEecHHHHHHHHHcCCCeEEEC-CccCCC
Confidence 9999999999985 57887643 678999998764 4688999999999999999999999986 465321
Q ss_pred ccCCCCCCCcccchhhhhHHHHhhcCC-CCeEEEEeCCChhhHHHHHHHHHHhC--CCceEEEEcCCCCCCCCCCCHHHH
Q 042101 272 VSNRELPPREKDTGYQYLWNCKEHLDK-VSRIILGTDADTPGHALAEELARRLG--KDRCWRVRWPKKDEFSYFKDANEV 348 (380)
Q Consensus 272 ~~~~~Lp~~~~~~~~~~l~~~~~~L~~-~~~Ivl~~DnD~AG~~aa~~la~~L~--~~~v~iv~lP~~~~~~~~KD~ND~ 348 (380)
. +|+.+|.+ .++||+|||+|.||++|+.++.+.|. ..+++++.+|+ +|||||+
T Consensus 185 ~------------------~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP~------gkDpdd~ 240 (329)
T 4edg_A 185 D------------------EHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPS------GMDPDEY 240 (329)
T ss_dssp H------------------HHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCT------TCCHHHH
T ss_pred H------------------HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEECCC------CCCHHHH
Confidence 1 23455544 47999999999999999999988874 23788999996 4999999
Q ss_pred HHhcChHHHHHHH-HhccCCCccch
Q 042101 349 LKCLGPGALREVI-ENAELYQLHVS 372 (380)
Q Consensus 349 L~~~g~~~l~~~i-~~A~~~~~~~~ 372 (380)
++++|.++|+++| ++|.++.--.+
T Consensus 241 l~~~G~~~~~~~i~~~~~~~~~f~~ 265 (329)
T 4edg_A 241 IGKYGNDAFTTFVKNDKKSFAHYKV 265 (329)
T ss_dssp HHHHCHHHHHHHHHHCCEEHHHHHH
T ss_pred HHHhCHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999995 77877654443
No 4
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=99.97 E-value=4.7e-31 Score=259.03 Aligned_cols=187 Identities=19% Similarity=0.277 Sum_probs=150.6
Q ss_pred CcccHHHHHHHHhCCCCHHHHhhcceEEecC------------------------------C-------cEEEEEe-cCC
Q 042101 163 EPLGEKLIAYLGERMISEGTLQRNSVMQRLH------------------------------D-------QAIAFPY-WHN 204 (380)
Q Consensus 163 ~pl~~~~~~YL~~RGIs~eti~~f~~g~~~~------------------------------g-------~~I~fP~-~~~ 204 (380)
++.++.+++||.+|||+++++++|++||.++ | +||+||+ |.+
T Consensus 38 ~~~~~~a~~YL~~RGls~e~i~~f~lGyap~~~~~L~~~l~~~g~~~~~l~~~GL~~~~~~g~~yd~Fr~Ri~fPI~d~~ 117 (338)
T 1dd9_A 38 QPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKR 117 (338)
T ss_dssp SGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTTSEEEC---CEEESCCSEEEEEEECTT
T ss_pred CCccHHHHHHHHHcCCCHHHHHHcceeeccccHHHHHHHHHHcCCCHHHHHHCCCeeecCCCccccccCCEEEEEEECCC
Confidence 3566789999999999999999999999752 1 2899995 799
Q ss_pred CEEEEEeeecCC---CccccccC-----CCCcccccccc----CCCCEEEEEechhHHHHHHHhCCCcEEEcCCCCCCCc
Q 042101 205 GVLVGCKYRSME---RKFRQEKG-----TEKWLYGLDDI----NETAEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKV 272 (380)
Q Consensus 205 G~vv~~~~R~~~---Kkf~~~~~-----~~~~Lfgl~~i----~~~~~iiIvEG~~DaLSl~q~G~~~~Vs~~~Ga~~~~ 272 (380)
|++|+|++|.++ .||.+.+. ++..|||++.+ .+.+.||||||++||||++|+|+.++|++ .|+....
T Consensus 118 G~vigf~gR~l~~~~pKYlnspet~if~K~~~Lygl~~A~~~i~~~~~viIvEG~~Dvlsl~q~G~~~aVA~-lGtalt~ 196 (338)
T 1dd9_A 118 GRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVAS-LGTSTTA 196 (338)
T ss_dssp SCEEEEEEEESSSCSCSEEECCCCSSCCTTTCCBTHHHHHHTCSSCSCEEEESSHHHHHHHHHTTCCCEEEC-CC-CCCH
T ss_pred CcEEEEEEEeCCCCCCceecCCCCcccccCccccCccHHHHhhccCCeEEEEechHhHHHHHHcCCCcEEEe-CccccCH
Confidence 999999999995 47877553 67899999753 45788999999999999999999998876 4653211
Q ss_pred cCCCCCCCcccchhhhhHHHHhhcCC-CCeEEEEeCCChhhHHHHHHHHHH---hC--CCceEEEEcCCCCCCCCCCCHH
Q 042101 273 SNRELPPREKDTGYQYLWNCKEHLDK-VSRIILGTDADTPGHALAEELARR---LG--KDRCWRVRWPKKDEFSYFKDAN 346 (380)
Q Consensus 273 ~~~~Lp~~~~~~~~~~l~~~~~~L~~-~~~Ivl~~DnD~AG~~aa~~la~~---L~--~~~v~iv~lP~~~~~~~~KD~N 346 (380)
+++.+|.+ .++||||||||.||++|+.++.+. +- ..+++++.+|+ +||||
T Consensus 197 ------------------~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP~------gkDpd 252 (338)
T 1dd9_A 197 ------------------DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPD------GEDPD 252 (338)
T ss_dssp ------------------HHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECT------TCCHH
T ss_pred ------------------HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC------CCChH
Confidence 23344433 489999999999999999999887 42 23688999996 49999
Q ss_pred HHHHhcChHHHHHHHHhccCCCccchhh
Q 042101 347 EVLKCLGPGALREVIENAELYQLHVSEE 374 (380)
Q Consensus 347 D~L~~~g~~~l~~~i~~A~~~~~~~~~~ 374 (380)
|+++++|.++|+++|++|.|+....+..
T Consensus 253 d~l~~~G~~~~~~~l~~a~~~~~f~~~~ 280 (338)
T 1dd9_A 253 TLVRKEGKEAFEARMEQAMPLSAFLFNS 280 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999876544443
No 5
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.95 E-value=4.7e-28 Score=249.34 Aligned_cols=186 Identities=26% Similarity=0.237 Sum_probs=153.3
Q ss_pred HHHHHHHhCCCCHHHHhhcceEEec-CCc-EEEEEe-cCCCEEEEEeeecCCCcccc-ccCCCCccccccccCCCCEEEE
Q 042101 168 KLIAYLGERMISEGTLQRNSVMQRL-HDQ-AIAFPY-WHNGVLVGCKYRSMERKFRQ-EKGTEKWLYGLDDINETAEVII 243 (380)
Q Consensus 168 ~~~~YL~~RGIs~eti~~f~~g~~~-~g~-~I~fP~-~~~G~vv~~~~R~~~Kkf~~-~~~~~~~Lfgl~~i~~~~~iiI 243 (380)
.+++||.+|||+.+++++|++++.+ +|+ +|+||+ |.+|++++|++|..+++|++ .++++..+||++.+.+.+.|+|
T Consensus 13 ~~~~YL~~Rgi~~~~~~~~~~~~~~~~g~~~i~fp~~d~~G~~~g~~~R~~~~~~ky~~~~k~~~lyg~~~~~~~~~v~i 92 (503)
T 1q57_A 13 GRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVV 92 (503)
T ss_dssp CBCCCBTTTTBCHHHHHHHTEEECCBTTBCEEEEEEECTTSCEEEEEEEETTTEEEEEECCCTTCEETGGGCSSEEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHcCeEEECCCCcEEEEEEEECCCCCEEEEEeECCCCCceEecCCCCCceECccccCCCCEEEE
Confidence 4679999999999999999999975 343 899995 79999999999997664432 2446778999998877789999
Q ss_pred EechhHHHHHHHh-CCC-cEEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhcCCCCeEEEEeCCChhhHHHHHHHHH
Q 042101 244 VEGEIDKLSVEEA-GFQ-NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHALAEELAR 321 (380)
Q Consensus 244 vEG~~DaLSl~q~-G~~-~~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L~~~~~Ivl~~DnD~AG~~aa~~la~ 321 (380)
|||++|+||++++ |+. ++++++++.... .+.++.++++|.++++|++|+|||.||++|+.++++
T Consensus 93 ~EG~~D~ls~~~~~g~~~~v~slg~~~~~~--------------~~~l~~~l~~l~~~~~ivl~~D~D~aG~~aa~~~~~ 158 (503)
T 1q57_A 93 TEGEIDMLTVMELQDCKYPVVSLGHGASAA--------------KKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ 158 (503)
T ss_dssp ESSHHHHHHHTTTTTTCSCEEEESSTTTTH--------------HHHHHTTHHHHHTEEEEEEECCSSHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhcCCCcEEEECCcccchh--------------HHHHHHHHHhhcCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999 874 455664433211 133444566777889999999999999999999999
Q ss_pred HhCCCceEEEEcCCCCCCCCCCCHHHHHHhcChHHHHHHHHhccCCCccchhh
Q 042101 322 RLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQLHVSEE 374 (380)
Q Consensus 322 ~L~~~~v~iv~lP~~~~~~~~KD~ND~L~~~g~~~l~~~i~~A~~~~~~~~~~ 374 (380)
.|...+|+++.+| + |||||+|+++|.++|.+++++|.++++.++..
T Consensus 159 ~l~~~~~~~~~~p-~------kD~nd~l~~~g~~~~~~~i~~a~~~~~~~i~~ 204 (503)
T 1q57_A 159 VLPAGKVRVAVLP-C------KDANECHLNGHDREIMEQVWNAGPWIPDGVVS 204 (503)
T ss_dssp HSCGGGEEECCCS-S------SSHHHHHTTSCHHHHHHHHTTCCCCCCSSEEE
T ss_pred hcccCcEEEEeCC-C------CCHHHHHHhcCHHHHHHHHHhcCCCCHHHhcC
Confidence 9975578888777 3 99999999999999999999999999987664
No 6
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=99.27 E-value=2.4e-12 Score=105.12 Aligned_cols=62 Identities=23% Similarity=0.479 Sum_probs=49.6
Q ss_pred cchhhHHHHH------HHHHHhCCccccCCCCCceeeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCccc
Q 042101 66 IDISKLTEVK------QKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRA 139 (380)
Q Consensus 66 ~~~~~~~~~~------~~l~~~gi~~~~~~~~G~~~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v 139 (380)
++.+.+++|+ +++..+ +++++ .|++|.++||||++ ++|||+|+++ ++.||||+ ||.+||+
T Consensus 5 ~~~~~i~~ik~~~~i~~v~~~~-~~lk~---~G~~~~~~CPfh~e------~~pSf~V~~~--k~~~~Cf~--cg~gGd~ 70 (103)
T 1d0q_A 5 IPEETIEAIRRGVDIVDVIGEY-VQLKR---QGRNYFGLCPFHGE------KTPSFSVSPE--KQIFHCFG--CGAGGNA 70 (103)
T ss_dssp SCHHHHHHHHHHCCHHHHHTTT-SCCEE---ETTEEEECCSSSCC------SSCCEEEETT--TTEEEETT--TCCEECH
T ss_pred CCHHHHHHHHHcCCHHHHHHHh-CCeee---cCCeEEEECCCCCC------CCCcEEEEcC--CCEEEECC--CCCCCCH
Confidence 4444455544 667666 88876 89999999999985 6799999875 48999999 9999999
Q ss_pred cc
Q 042101 140 FA 141 (380)
Q Consensus 140 ~~ 141 (380)
++
T Consensus 71 i~ 72 (103)
T 1d0q_A 71 FT 72 (103)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 7
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=98.84 E-value=4.5e-09 Score=87.37 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=56.6
Q ss_pred CEEEEEechhHHHHHHHhCCCcEEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhcCCCCe-EEEEeCCChhhHHHHH
Q 042101 239 AEVIIVEGEIDKLSVEEAGFQNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSR-IILGTDADTPGHALAE 317 (380)
Q Consensus 239 ~~iiIvEG~~DaLSl~q~G~~~~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L~~~~~-Ivl~~DnD~AG~~aa~ 317 (380)
+.+|||||..|+++++++|+.++|++ +|++ + .++...+.+.++ |+|++|+|.+|++++.
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~~~iI~t-~Gta--l-----------------~~~i~~l~~~~~~VIIltD~D~aGe~ir~ 80 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSIKNVIDL-SGKR--Y-----------------ADVVDMLEGKWEKVILLFDLDTHGERINQ 80 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTCCCEEEC-TTSC--H-----------------HHHHHHHTTTCSEEEECCCSSHHHHHHHH
T ss_pred CcEEEEEChHHHHHHHHhCcCcEEEE-CCCc--H-----------------HHHHHHHHhCCCEEEEEECCChhHHHHHH
Confidence 67999999999999999999998875 5653 1 123455665555 9999999999999999
Q ss_pred HHHHHhCCCceE
Q 042101 318 ELARRLGKDRCW 329 (380)
Q Consensus 318 ~la~~L~~~~v~ 329 (380)
++.+.|+...++
T Consensus 81 ~i~~~l~~~~~~ 92 (118)
T 1t6t_1 81 KMKELLSSQGFL 92 (118)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHhcCccCce
Confidence 999998643443
No 8
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=98.23 E-value=1.2e-05 Score=66.90 Aligned_cols=104 Identities=21% Similarity=0.207 Sum_probs=72.3
Q ss_pred CCEEEEEechhHHHHHHHhC-C-CcEEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhcCCCCeEEEEeCCChhhHHH
Q 042101 238 TAEVIIVEGEIDKLSVEEAG-F-QNCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315 (380)
Q Consensus 238 ~~~iiIvEG~~DaLSl~q~G-~-~~~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L~~~~~Ivl~~DnD~AG~~a 315 (380)
-+.+|||||..|.+++.++| + -+++.+ +|+ ++. .+.. .+..+...+.|++++|+|.+|.+.
T Consensus 4 i~~vIVVEGk~D~~~L~~~~~~~~~iI~t-~Gs---i~~---------~~l~----~I~~~~~~r~VIi~TD~D~~GekI 66 (119)
T 2fcj_A 4 VEKVIIVEGRSDKQKVAAVLNEPVVIVCT-NGT---ISD---------ARLE----ELADELEGYDVYLLADADEAGEKL 66 (119)
T ss_dssp CCEEEEESSHHHHHHHHHHBSSCCEEEEC-CSC---CCH---------HHHH----HHHHHTTTSEEEEECCSSHHHHHH
T ss_pred cCeEEEEechHHHHHHHHhcCCCCCEEEe-CCc---cCH---------HHHH----HHHHHhcCCCEEEEECCCccHHHH
Confidence 36899999999999999998 3 345554 455 211 0111 123334578999999999999999
Q ss_pred HHHHHHHhCCCceEEEEcCCCCCCCCCCCHHHHHHhcChHHHHHHHHhccCCCc
Q 042101 316 AEELARRLGKDRCWRVRWPKKDEFSYFKDANEVLKCLGPGALREVIENAELYQL 369 (380)
Q Consensus 316 a~~la~~L~~~~v~iv~lP~~~~~~~~KD~ND~L~~~g~~~l~~~i~~A~~~~~ 369 (380)
.+.+.+.|+. +....+|.. ....+++ .++.+.++|.++.....
T Consensus 67 Rk~i~~~lp~--~~hafi~r~-----~~gVE~a----~~~~I~~aL~~~~~~~~ 109 (119)
T 2fcj_A 67 RRQFRRMFPE--AEHLYIDRA-----YREVAAA----PIWHLAQVLLRARFDVR 109 (119)
T ss_dssp HHHHHHHCTT--SEEECCCTT-----TCSTTTS----CHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHCCC--CcEEeccCC-----ccCcccC----CHHHHHHHHHhcccchh
Confidence 9999999975 345556652 2344444 56888999988866443
No 9
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=93.24 E-value=0.49 Score=43.07 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCCEEEEEechhHHHHHHHhCCC-cEEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhcCCCCeEEEEeCCChhhHHH
Q 042101 237 ETAEVIIVEGEIDKLSVEEAGFQ-NCVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHLDKVSRIILGTDADTPGHAL 315 (380)
Q Consensus 237 ~~~~iiIvEG~~DaLSl~q~G~~-~~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L~~~~~Ivl~~DnD~AG~~a 315 (380)
....|.|||-.-|++++.+.|.. ...-|-+|.-+.+.-+ -+. +....- .++.+...++||||++.+--|+.-
T Consensus 78 d~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~lSPldGi--gP~--dL~i~~---L~~Rl~~V~EVIlAtnpTvEGEaT 150 (228)
T 1vdd_A 78 DQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGV--GPD--KLHIKP---LLPRVGQGMEVILATGTTVEGDAT 150 (228)
T ss_dssp CTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTB--CTT--TSTTGG---GGGGCCTTCEEEECCCSSHHHHHH
T ss_pred CCCeEEEECCHHHHHHHHHhcccceEEEecCCccCcccCC--Chh--hcCHHH---HHHHhCCCCEEEEeCCCCchHHHH
Confidence 45689999999999999999763 3333434542222211 011 111111 123345679999999999999999
Q ss_pred HHHHHHHhCCCceEEEEc
Q 042101 316 AEELARRLGKDRCWRVRW 333 (380)
Q Consensus 316 a~~la~~L~~~~v~iv~l 333 (380)
|.-|++.|....+++.++
T Consensus 151 A~YI~~~Lk~~~vkVTRi 168 (228)
T 1vdd_A 151 ALYLQRLLEPLGAAISRI 168 (228)
T ss_dssp HHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 999999997656666665
No 10
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.53 E-value=0.15 Score=39.24 Aligned_cols=27 Identities=33% Similarity=0.914 Sum_probs=19.6
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. . ++... ..|+|+|-. ||.
T Consensus 35 ky~CpfCGk---~-----~vkR~---a~GIW~C~k--Cg~ 61 (83)
T 3j21_i 35 KHTCPVCGR---K-----AVKRI---STGIWQCQK--CGA 61 (83)
T ss_dssp CBCCSSSCS---S-----CEEEE---ETTEEEETT--TCC
T ss_pred ccCCCCCCC---c-----eeEec---CcCeEEcCC--CCC
Confidence 467999995 1 34432 259999999 987
No 11
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=90.97 E-value=0.15 Score=40.64 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.3
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. .++... ..|+|+|-. ||.
T Consensus 36 ky~CpfCgk--------~~vKR~---a~GIW~C~k--Cg~ 62 (103)
T 4a17_Y 36 KYGCPFCGK--------VAVKRA---AVGIWKCKP--CKK 62 (103)
T ss_dssp CEECTTTCC--------EEEEEE---ETTEEEETT--TTE
T ss_pred CCCCCCCCC--------ceeeec---CcceEEcCC--CCC
Confidence 467999985 134332 359999999 986
No 12
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=90.67 E-value=0.17 Score=39.62 Aligned_cols=27 Identities=26% Similarity=0.749 Sum_probs=19.4
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. + ++... ..|+|+|-. ||.
T Consensus 36 ky~CpfCgk----~----~vkR~---a~GIW~C~~--Cg~ 62 (92)
T 3iz5_m 36 KYFCEFCGK----F----AVKRK---AVGIWGCKD--CGK 62 (92)
T ss_dssp CBCCTTTCS----S----CBEEE---ETTEEECSS--SCC
T ss_pred cccCcccCC----C----eeEec---CcceEEcCC--CCC
Confidence 458999995 1 24432 259999999 987
No 13
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=89.95 E-value=0.19 Score=39.36 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=19.3
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. . ++... ..|+|+|-. |+.
T Consensus 36 ky~CpfCgk---~-----~vkR~---a~GIW~C~~--C~~ 62 (92)
T 3izc_m 36 RYDCSFCGK---K-----TVKRG---AAGIWTCSC--CKK 62 (92)
T ss_dssp CCCCSSSCS---S-----CCEEE---ETTEEECTT--TCC
T ss_pred CCcCCCCCC---c-----eeeec---ccceEEcCC--CCC
Confidence 467999995 1 24332 259999999 986
No 14
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=89.93 E-value=1.6 Score=39.38 Aligned_cols=90 Identities=22% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCCEEEEEechhHHHHHHHhCCCc-EEEcCCCCCCCccCCCCCCCcccchhhhhHHHHhhc--CCCCeEEEEeCCChhhH
Q 042101 237 ETAEVIIVEGEIDKLSVEEAGFQN-CVSVPSGAPPKVSNRELPPREKDTGYQYLWNCKEHL--DKVSRIILGTDADTPGH 313 (380)
Q Consensus 237 ~~~~iiIvEG~~DaLSl~q~G~~~-~Vs~~~Ga~~~~~~~~Lp~~~~~~~~~~l~~~~~~L--~~~~~Ivl~~DnD~AG~ 313 (380)
+...|.|||..-|++++.+.|..+ ..-|-+|.-+.+.-+ -+. +..+.-| ++.+ ...++||||++..--|+
T Consensus 92 d~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~iSPldGi--gP~--~L~i~~L---~~Ri~~~~v~EVIlAtnpTvEGe 164 (212)
T 3vdp_A 92 DHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGV--GPE--DIRIKEL---LERVRDGSVKEVILATNPDIEGE 164 (212)
T ss_dssp EEEEEEEESSHHHHHHHHTTSCCCEEEEECSSCCBTTTTB--CGG--GTTHHHH---HHHHHHSCCSEEEECCCSSHHHH
T ss_pred CCCEEEEECCHHHHHHHHhhCccceEEEecCCccCccCCC--Ccc--ccCHHHH---HHHHhcCCCcEEEEECCCCccHH
Confidence 345799999999999999998633 333444543222211 111 1122212 2333 35799999999999999
Q ss_pred HHHHHHHHHhCCCceEEEEc
Q 042101 314 ALAEELARRLGKDRCWRVRW 333 (380)
Q Consensus 314 ~aa~~la~~L~~~~v~iv~l 333 (380)
.-|.-+++.|....+++.++
T Consensus 165 aTa~Yi~~~Lk~~~vkvTRi 184 (212)
T 3vdp_A 165 ATAMYIAKLLKPFGVKVTRI 184 (212)
T ss_dssp HHHHHHHHHHTTTTCEEEEC
T ss_pred HHHHHHHHHhhhcCCCeeec
Confidence 99999999998666777665
No 15
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=88.67 E-value=0.31 Score=39.71 Aligned_cols=27 Identities=26% Similarity=0.757 Sum_probs=19.6
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. .++... ..|+|+|-. ||.
T Consensus 60 kytCPfCGk--------~~vKR~---avGIW~C~~--Cgk 86 (116)
T 3cc2_Z 60 DHACPNCGE--------DRVDRQ---GTGIWQCSY--CDY 86 (116)
T ss_dssp CEECSSSCC--------EEEEEE---ETTEEEETT--TCC
T ss_pred CCcCCCCCC--------ceeEec---CceeEECCC--CCC
Confidence 468999985 134432 258999999 987
No 16
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=87.73 E-value=0.35 Score=36.29 Aligned_cols=27 Identities=26% Similarity=0.757 Sum_probs=19.1
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. + ++... ..|+|+|-. |+.
T Consensus 27 ky~C~fCgk----~----~vkR~---a~GIW~C~~--C~~ 53 (73)
T 1ffk_W 27 KYKCPVCGF----P----KLKRA---STSIWVCGH--CGY 53 (73)
T ss_pred CccCCCCCC----c----eeEEE---EeEEEECCC--CCc
Confidence 468999985 1 23322 259999999 986
No 17
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=87.25 E-value=0.44 Score=36.68 Aligned_cols=27 Identities=30% Similarity=0.813 Sum_probs=19.0
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
...|||||. +.++ .+ ..|.|+|-. ||.
T Consensus 27 ~y~Cp~CG~--------~~v~-r~--atGiW~C~~--Cg~ 53 (83)
T 1vq8_Z 27 DHACPNCGE--------DRVD-RQ--GTGIWQCSY--CDY 53 (83)
T ss_dssp CEECSSSCC--------EEEE-EE--ETTEEEETT--TCC
T ss_pred cCcCCCCCC--------ccee-cc--CCCeEECCC--CCC
Confidence 457999985 1222 12 369999999 987
No 18
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=86.15 E-value=0.13 Score=38.55 Aligned_cols=27 Identities=26% Similarity=0.644 Sum_probs=18.9
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
+..||||+. . ++.. ...|+|+|-. |+.
T Consensus 26 ky~C~fCgk---~-----~vkR---~a~GIW~C~~--C~~ 52 (72)
T 3jyw_9 26 RYDCSFCGK---K-----TVKR---GAAGIWTCSC--CKK 52 (72)
T ss_dssp CBCCSSCCS---S-----CBSB---CSSSCBCCSS--SCC
T ss_pred CccCCCCCC---c-----eeEe---cCCCeEECCC--CCC
Confidence 467999995 1 1221 1469999999 986
No 19
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=83.10 E-value=0.98 Score=34.86 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=24.7
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcC--CccEEEeCCccCCCCcc
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDG--DFAMWRCFRVDCGWAGR 138 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~--~~g~~~Cf~~~CG~~G~ 138 (380)
.-.||||+. ++| +.|-.|+ ..|.-.|-. ||....
T Consensus 23 ~F~CPfCnh-----~~s--V~vkidk~~~~g~l~C~~--Cg~~~~ 58 (85)
T 1wii_A 23 QFTCPFCNH-----EKS--CDVKMDRARNTGVISCTV--CLEEFQ 58 (85)
T ss_dssp CCCCTTTCC-----SSC--EEEEEETTTTEEEEEESS--SCCEEE
T ss_pred eEcCCCCCC-----CCe--EEEEEEccCCEEEEEccc--CCCeEE
Confidence 467999996 444 6665555 468999999 998543
No 20
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=62.81 E-value=4.9 Score=25.69 Aligned_cols=32 Identities=25% Similarity=0.717 Sum_probs=21.1
Q ss_pred cCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCccc
Q 042101 98 LCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRA 139 (380)
Q Consensus 98 ~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v 139 (380)
+||.|+. |.-.+..++..-+.+|-+ ||+.+.+
T Consensus 2 lC~~C~~--------peT~l~~~~~~~~l~C~a--CG~~~~v 33 (36)
T 1k81_A 2 ICRECGK--------PDTKIIKEGRVHLLKCMA--CGAIRPI 33 (36)
T ss_dssp CCSSSCS--------CEEEEEEETTEEEEEEET--TTEEEEE
T ss_pred CCcCCCC--------CCcEEEEeCCcEEEEhhc--CCCcccc
Confidence 6999986 222333333445778999 9997765
No 21
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=57.98 E-value=14 Score=32.10 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHHHHhCCccccCCCCCceeeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 65 TIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 65 ~~~~~~~~~~~~~l~~~gi~~~~~~~~G~~~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
+|+...|.++++.+.. .| .+||.|+. .+. .+.+..+...-+.+|-+ ||+...+.
T Consensus 79 ~~~~~~i~~~L~~yI~-------------~Y-VlC~~C~s-PdT-----~L~k~~~~r~~~l~C~A--CGa~~~V~ 132 (170)
T 2g2k_A 79 SHEANKLQDMLDGFIK-------------KF-VLCPECEN-PET-----DLHVNPKKQTIGNSCKA--CGYRGMLD 132 (170)
T ss_dssp CCCHHHHHHHHHHHHH-------------HH-HSCTTTSS-SCE-----EEEEETTTTEEEEEETT--TCCCCCSC
T ss_pred eeCHHHHHHHHHHHHH-------------He-EECCCCCC-Ccc-----EEEEecCCCEEEEEccc--cCCccccc
Confidence 3666677776665554 12 58999986 111 23332123345778999 99998885
No 22
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=57.71 E-value=27 Score=36.44 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=49.0
Q ss_pred CEEEEEechhHHHHHHHh-CCCcEEEcCCCCCCCccCCCCCC--Cc--------ccchhhhhHHHHhhcCCCCeEEEEeC
Q 042101 239 AEVIIVEGEIDKLSVEEA-GFQNCVSVPSGAPPKVSNRELPP--RE--------KDTGYQYLWNCKEHLDKVSRIILGTD 307 (380)
Q Consensus 239 ~~iiIvEG~~DaLSl~q~-G~~~~Vs~~~Ga~~~~~~~~Lp~--~~--------~~~~~~~l~~~~~~L~~~~~Ivl~~D 307 (380)
+.+||+|-.-=|-++..+ |-...|..+.|--..+....++. .. ...+...+.....++.+.. ||+|.|
T Consensus 6 k~LvIaEkPs~Ak~Ia~~Lg~~y~Vt~s~GHl~~l~~~~~~~~~~~~f~p~~~~~~~~~~~~~~lk~l~k~ad-iiiAtD 84 (633)
T 2gai_A 6 KKYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKVVEKLKDLAKKGE-LLIASD 84 (633)
T ss_dssp -CEEEESCHHHHHHHHHHHGGGSEEEECCSCSEESCSSSCCEETTTTSEECCEECTTCHHHHHHHHHHHHHSC-EEECCC
T ss_pred cEEEEEeCHHHHHHHHHHhCCCCEEEecccccccCCccCCCCCcccCcCceEEECccHHHHHHHHHHHHhhCC-EEEcCC
Confidence 469999999888887776 44344544455311110000000 00 0001111222223344567 999999
Q ss_pred CChhhHHHHHHHHHHhCC
Q 042101 308 ADTPGHALAEELARRLGK 325 (380)
Q Consensus 308 nD~AG~~aa~~la~~L~~ 325 (380)
.|.-|+.-+..+.+.++.
T Consensus 85 ~DREGE~I~~~i~~~~~~ 102 (633)
T 2gai_A 85 MDREGEAIAWHIARVTNT 102 (633)
T ss_dssp SSHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHcCC
Confidence 999999999999999863
No 23
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.79 E-value=12 Score=32.12 Aligned_cols=36 Identities=25% Similarity=0.614 Sum_probs=22.7
Q ss_pred ecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 97 LLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 97 ~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
.+||.|+. .+. .+.+..+...-+.+|-+ ||+...+.
T Consensus 104 VlC~~C~s-PdT-----~L~~~~~~r~~~l~C~A--CGa~~~V~ 139 (157)
T 2e9h_A 104 VLCPECEN-PET-----DLHVNPKKQTIGNSCKA--CGYRGMLD 139 (157)
T ss_dssp TSCTTTCC-SCC-----EEEEETTTTEEEEECSS--SCCEEECC
T ss_pred EECCCCCC-Ccc-----EEEEecCCCEEEEEccC--CCCCCccc
Confidence 57999986 221 23332122345778999 99988774
No 24
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=48.32 E-value=8.5 Score=32.24 Aligned_cols=50 Identities=14% Similarity=0.339 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHHHHhCCccccCCCCCceeeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCccc
Q 042101 66 IDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRA 139 (380)
Q Consensus 66 ~~~~~~~~~~~~l~~~gi~~~~~~~~G~~~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v 139 (380)
|+...|.++++.+.. .| .+||.|+. .+. .+.. ++..-.-+|-+ ||+...+
T Consensus 86 ~~~~~i~~~L~~yI~-------------~y-VlC~~C~s-PdT-----~l~k--~~r~~~l~C~A--CGa~~~V 135 (138)
T 1nee_A 86 FTHFLINERIEDYVN-------------KF-VICHECNR-PDT-----RIIR--EGRISLLKCEA--CGAKAPL 135 (138)
T ss_dssp CSSSHHHHHHHHHHT-------------HH-HHHTCCSS-CSS-----CCEE--ETTTTEEECST--TSCCCCS
T ss_pred eCHHHHHHHHHHHHh-------------hE-EECCCCCC-cCc-----EEEE--cCCeEEEEccC--CCCCccc
Confidence 455556665554443 12 58999987 222 2333 33457899999 9998776
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=47.75 E-value=13 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.839 Sum_probs=19.4
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
...||.|+. . .+ ++ |..+|.+.|-. ||.
T Consensus 5 ~~~CP~C~~---~-----~l-~~-d~~~gelvC~~--CG~ 32 (50)
T 1pft_A 5 QKVCPACES---A-----EL-IY-DPERGEIVCAK--CGY 32 (50)
T ss_dssp CCSCTTTSC---C-----CE-EE-ETTTTEEEESS--SCC
T ss_pred cEeCcCCCC---c-----ce-EE-cCCCCeEECcc--cCC
Confidence 357999975 1 13 23 34568999999 986
No 26
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.93 E-value=16 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.780 Sum_probs=19.3
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
...||-||. ..|.. +. ...++|-. ||.
T Consensus 19 ~k~CP~CG~--------~~fm~-~~--~~R~~C~k--CG~ 45 (50)
T 3j20_Y 19 NKFCPRCGP--------GVFMA-DH--GDRWACGK--CGY 45 (50)
T ss_dssp SEECSSSCS--------SCEEE-EC--SSEEECSS--SCC
T ss_pred cccCCCCCC--------ceEEe-cC--CCeEECCC--CCC
Confidence 467999985 13554 33 36899998 997
No 27
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=44.25 E-value=8.6 Score=32.60 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHHHHHhCCccccCCCCCceeeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 65 TIDISKLTEVKQKLKLVGINCDDSCIPGRYAHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 65 ~~~~~~~~~~~~~l~~~gi~~~~~~~~G~~~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
+|+...|.++++.+.. .| .+||.|+. .+. .+.. ++..-.-+|-+ ||+...+.
T Consensus 87 ~~~~~~i~~~L~~yI~-------------~y-VlC~~C~s-PdT-----~L~k--~~r~~~l~C~A--CGa~~~V~ 138 (148)
T 2d74_B 87 RFTPYLIANKLKKYIK-------------EY-VICPVCGS-PDT-----KIIK--RDRFHFLKCEA--CGAETPIQ 138 (148)
T ss_dssp CCCHHHHHHHHHHHHH-------------HH-SSCSSSCC-TTC-----CCCB--SSSSBCCCCSS--SCCCCCCC
T ss_pred eeCHHHHHHHHHHHHH-------------HE-EECCCCCC-cCc-----EEEE--eCCEEEEEecC--CCCCcccc
Confidence 3556666666555544 12 58999987 222 1222 33345778999 99988773
No 28
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.70 E-value=12 Score=25.85 Aligned_cols=27 Identities=22% Similarity=0.770 Sum_probs=20.4
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
+-.||.|+. . + ..+.|+|.. ||.. ++.
T Consensus 14 k~iCpkC~a----------~----~-~~gaw~CrK--CG~~-~lr 40 (51)
T 3j21_g 14 KYVCLRCGA----------T----N-PWGAKKCRK--CGYK-RLR 40 (51)
T ss_dssp EEECTTTCC----------E----E-CTTCSSCSS--SSSC-CCE
T ss_pred CccCCCCCC----------c----C-CCCceecCC--CCCc-ccc
Confidence 568999985 1 1 358999999 9997 553
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=39.49 E-value=59 Score=36.11 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=32.2
Q ss_pred hhcCCCCeEEEEeCCChhhHHHHHHHHHHhCC--CceEEEEcC
Q 042101 294 EHLDKVSRIILGTDADTPGHALAEELARRLGK--DRCWRVRWP 334 (380)
Q Consensus 294 ~~L~~~~~Ivl~~DnD~AG~~aa~~la~~L~~--~~v~iv~lP 334 (380)
..+.+..+||+|.|.|.-|+.-+..+.+.++. ..++.+.+.
T Consensus 655 ~~~~~~d~i~~atD~DrEGE~I~~~i~~~~~~~~~~~~R~~f~ 697 (1104)
T 4ddu_A 655 EISLEADEILVATDPDVEGEKISWDVTQYLLPSTRSLRRIEMH 697 (1104)
T ss_dssp HHTTTCSEEEECCCSSHHHHHHHHHHHHHHTTTCSCEEECCCS
T ss_pred HHHhcCCEEEECcCCchhHHHHHHHHHHHhcccCCCeEEEEEc
Confidence 44567789999999999999999999999863 345555554
No 30
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=37.08 E-value=34 Score=23.62 Aligned_cols=34 Identities=24% Similarity=0.685 Sum_probs=21.6
Q ss_pred eeecCCCCCCCCCCCCccceEEEEE-----cCCccEEEeCCccCCCC
Q 042101 95 AHLLCPKCKGGGRSLERSLSVHIIQ-----DGDFAMWRCFRVDCGWA 136 (380)
Q Consensus 95 ~~~~CPfc~~~~~~~eks~s~~v~~-----d~~~g~~~Cf~~~CG~~ 136 (380)
....||-|+. +...|+-.. ++.+-+|.|-. ||..
T Consensus 14 ~~~~Cp~Cg~------~~~~~~q~Q~rsadep~T~fy~C~~--Cg~~ 52 (57)
T 1qyp_A 14 TKITCPKCGN------DTAYWWEMQTRAGDEPSTIFYKCTK--CGHT 52 (57)
T ss_dssp EECCCTTTCC------SEEEEEEECCSSSSCSSEEEEEESS--SCCE
T ss_pred eEeECCCCCC------CEEEEEEeecccCCCCCcEEEEcCC--CCCE
Confidence 3578999995 223343221 23456899999 9874
No 31
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=34.56 E-value=35 Score=35.73 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=31.5
Q ss_pred hhcCCCCeEEEEeCCChhhHHHHHHHHHHhCC-----CceEEEEcC
Q 042101 294 EHLDKVSRIILGTDADTPGHALAEELARRLGK-----DRCWRVRWP 334 (380)
Q Consensus 294 ~~L~~~~~Ivl~~DnD~AG~~aa~~la~~L~~-----~~v~iv~lP 334 (380)
.++.+...||+|.|.|.-|+.-+..+.+.++. ..++.+.+.
T Consensus 90 ~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~~~~~v~R~~fs 135 (659)
T 1i7d_A 90 RFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLIN 135 (659)
T ss_dssp HHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCCS
T ss_pred HHHhcCCeEEEcCCCCCCCCHHHHHHHHHhCccccCCCceEEEEEc
Confidence 33455679999999999999999999999874 245555444
No 32
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=33.84 E-value=12 Score=29.33 Aligned_cols=26 Identities=31% Similarity=0.880 Sum_probs=19.4
Q ss_pred eeecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCC
Q 042101 95 AHLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWA 136 (380)
Q Consensus 95 ~~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~ 136 (380)
.+.+||-||. . +|++ +.+.|.. ||..
T Consensus 15 tH~lCrRCG~---~-----sfH~------qK~~Cgk--CGYp 40 (97)
T 2zkr_2 15 THTLCRRCGS---K-----AYHL------QKSTCGK--CGYP 40 (97)
T ss_dssp CEECCTTTCS---S-----CEET------TSCCBTT--TCTT
T ss_pred CCCcCCCCCC---c-----cCcC------ccccCcc--cCCc
Confidence 3789999996 1 5754 4569999 9983
No 33
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=33.62 E-value=68 Score=33.06 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=32.3
Q ss_pred hhcCCCCeEEEEeCCChhhHHHHHHHHHHhCC--CceEEEEcC
Q 042101 294 EHLDKVSRIILGTDADTPGHALAEELARRLGK--DRCWRVRWP 334 (380)
Q Consensus 294 ~~L~~~~~Ivl~~DnD~AG~~aa~~la~~L~~--~~v~iv~lP 334 (380)
.++.+...||+|.|.|.-|+.-+..+.+.++. ..++.+.+.
T Consensus 98 ~l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~~v~R~~fs 140 (592)
T 1mw9_X 98 QLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFN 140 (592)
T ss_dssp HHHHTCSEEEECCCSSHHHHHHHHHHHHHHCSCGGGEEECCCS
T ss_pred HHHhcCCeEEEcCCCCccccHHHHHHHHHhCCCCCCeEEEEEc
Confidence 33456789999999999999999999999974 246565554
No 34
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=33.05 E-value=20 Score=24.98 Aligned_cols=28 Identities=36% Similarity=0.997 Sum_probs=19.3
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWA 136 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~ 136 (380)
...||.||. + .++.. ....|+|-. ||..
T Consensus 18 ~~fCPkCG~-~--------~~ma~--~~dr~~C~k--Cgyt 45 (55)
T 2k4x_A 18 HRFCPRCGP-G--------VFLAE--HADRYSCGR--CGYT 45 (55)
T ss_dssp SCCCTTTTT-T--------CCCEE--CSSEEECTT--TCCC
T ss_pred cccCcCCCC-c--------eeEec--cCCEEECCC--CCCE
Confidence 478999996 1 22222 346999999 9986
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=31.72 E-value=44 Score=36.88 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=30.2
Q ss_pred cCCCCeEEEEeCCChhhHHHHHHHHHHhCC-CceEEEEcC
Q 042101 296 LDKVSRIILGTDADTPGHALAEELARRLGK-DRCWRVRWP 334 (380)
Q Consensus 296 L~~~~~Ivl~~DnD~AG~~aa~~la~~L~~-~~v~iv~lP 334 (380)
+.+...||+|.|.|.-|+.-+..+.+.++. ..++.+.+.
T Consensus 620 ~~~~d~ii~atD~DrEGE~I~~~i~~~~~~~~~~~R~~~~ 659 (1054)
T 1gku_B 620 AHDAEFVIVGTDPDTEGEKIAWDLKNLLSGCGAVKRAEFH 659 (1054)
T ss_dssp HHHHSEEEECCCSSHHHHHHHHHHHHHHTTSSEEEECCCS
T ss_pred HhcCCEEEECCCCChhhhHHHHHHHHHhCCCCCeEEEEEc
Confidence 345679999999999999999999999853 245555443
No 36
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=29.93 E-value=35 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.567 Sum_probs=22.5
Q ss_pred ecCCCCCCCCCCCCccceEEEEEc--CCccEEEeCCccCCCCccc
Q 042101 97 LLCPKCKGGGRSLERSLSVHIIQD--GDFAMWRCFRVDCGWAGRA 139 (380)
Q Consensus 97 ~~CPfc~~~~~~~eks~s~~v~~d--~~~g~~~Cf~~~CG~~G~v 139 (380)
..||.||. -+++..+ .....|.|.. ||+...+
T Consensus 5 ~FCp~Cgn---------lL~~~~~~~~~~~~~~C~~--C~y~~~~ 38 (122)
T 1twf_I 5 RFCRDCNN---------MLYPREDKENNRLLFECRT--CSYVEEA 38 (122)
T ss_dssp CBCSSSCC---------BCEEEEETTTTEEEEECSS--SSCEEEC
T ss_pred CcccccCc---------cCcccccCcCCCCEEECCc--CCCeeec
Confidence 57999986 3555444 3357999999 9986544
No 37
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.37 E-value=40 Score=26.78 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHhCCccccC---CCC-Ccee------eecCCCCCCCCCCCCccceEEE
Q 042101 67 DISKLTEVKQKLKLVGINCDDS---CIP-GRYA------HLLCPKCKGGGRSLERSLSVHI 117 (380)
Q Consensus 67 ~~~~~~~~~~~l~~~gi~~~~~---~~~-G~~~------~~~CPfc~~~~~~~eks~s~~v 117 (380)
...+|+.|...+...|-.|..+ |+. |..+ -..||.|+. .+=.-|.|.|
T Consensus 45 Vy~hLeHIaksl~r~g~~L~v~p~~C~~CG~~F~~~~~kPsrCP~CkS---e~Ie~P~F~I 102 (105)
T 2gmg_A 45 ILEDLKVISKIAKREGMVLLIKPAQCRKCGFVFKAEINIPSRCPKCKS---EWIEEPRFKL 102 (105)
T ss_dssp HHHHHHHHHHHHTTTTEEEEECCCBBTTTCCBCCCCSSCCSSCSSSCC---CCBCCCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEECcChhhCcCeecccCCCCCCCcCCCC---CccCCcceee
Confidence 4578899999998877533221 211 3333 267888875 1124456665
No 38
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.14 E-value=19 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=19.7
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGW 135 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~ 135 (380)
...||-|+. . . .++ |...|-+.|-. ||.
T Consensus 11 ~~~Cp~C~~---~-----~-lv~-D~~~ge~vC~~--CGl 38 (58)
T 1dl6_A 11 RVTCPNHPD---A-----I-LVE-DYRAGDMICPE--CGL 38 (58)
T ss_dssp CCSBTTBSS---S-----C-CEE-CSSSCCEECTT--TCC
T ss_pred cccCcCCCC---C-----c-eeE-eCCCCeEEeCC--CCC
Confidence 457999985 1 1 233 44578999999 986
No 39
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=27.78 E-value=37 Score=24.94 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=8.4
Q ss_pred EEEeCCccCCCC
Q 042101 125 MWRCFRVDCGWA 136 (380)
Q Consensus 125 ~~~Cf~~~CG~~ 136 (380)
-|+|-. ||..
T Consensus 36 ~~~C~~--CGE~ 45 (78)
T 3ga8_A 36 GLYCVH--CEES 45 (78)
T ss_dssp EEEETT--TCCE
T ss_pred eEECCC--CCCE
Confidence 789999 9873
No 40
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=26.40 E-value=32 Score=29.88 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCHHHHhh
Q 042101 167 EKLIAYLGERMISEGTLQR 185 (380)
Q Consensus 167 ~~~~~YL~~RGIs~eti~~ 185 (380)
....+||.+|||+.+++..
T Consensus 139 ~~l~~yLeeRGI~~~la~f 157 (182)
T 3jv1_A 139 DSFTSYLSARGVNDTLANF 157 (182)
T ss_dssp HHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4679999999999998764
No 41
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=26.20 E-value=31 Score=30.43 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCHHHHhh
Q 042101 167 EKLIAYLGERMISEGTLQR 185 (380)
Q Consensus 167 ~~~~~YL~~RGIs~eti~~ 185 (380)
....+||.+|||+.+++..
T Consensus 160 ~~l~~YLeeRGI~~~la~f 178 (203)
T 1yqf_A 160 NCVMTYLEKRGVDEKLGEF 178 (203)
T ss_dssp HHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4679999999999998764
No 42
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.98 E-value=49 Score=31.25 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=21.9
Q ss_pred eeeecCCCCCCCCCCCCccceEEEEEc----CCccEEEeCCccCCCCccc
Q 042101 94 YAHLLCPKCKGGGRSLERSLSVHIIQD----GDFAMWRCFRVDCGWAGRA 139 (380)
Q Consensus 94 ~~~~~CPfc~~~~~~~eks~s~~v~~d----~~~g~~~Cf~~~CG~~G~v 139 (380)
...+.||.||. .|...+-.. ...-..||.- ||..-.+
T Consensus 180 ~~~~~CPvCGs-------~P~~s~l~~~g~~~G~R~l~Cs~--C~t~W~~ 220 (309)
T 2fiy_A 180 ESRTLCPACGS-------PPMAGMIRQGGKETGLRYLSCSL--CACEWHY 220 (309)
T ss_dssp TTCSSCTTTCC-------CEEEEEEEC----CCEEEEEETT--TCCEEEC
T ss_pred ccCCCCCCCCC-------cCceeEEeecCCCCCcEEEEeCC--CCCEEee
Confidence 34789999996 234443321 1123789988 8765443
No 43
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.97 E-value=51 Score=24.09 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=22.6
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
...||.|++ .+.+.. ..|...|-. ||..-.+.
T Consensus 8 iL~CP~ck~---------~L~~~~--~~~~LiC~~--cg~~YPI~ 39 (70)
T 2js4_A 8 ILVCPVCKG---------RLEFQR--AQAELVCNA--DRLAFPVR 39 (70)
T ss_dssp CCBCTTTCC---------BEEEET--TTTEEEETT--TTEEEEEE
T ss_pred heECCCCCC---------cCEEeC--CCCEEEcCC--CCceecCC
Confidence 468999986 244432 358899999 98765554
No 44
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=24.72 E-value=35 Score=30.23 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCHHHHhh
Q 042101 167 EKLIAYLGERMISEGTLQR 185 (380)
Q Consensus 167 ~~~~~YL~~RGIs~eti~~ 185 (380)
....+||.+|||+.+++..
T Consensus 164 ~~l~~yLeeRGI~~~la~f 182 (209)
T 1p32_A 164 DHLMDFLADRGVDNTFADE 182 (209)
T ss_dssp HHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4679999999999998765
No 45
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.56 E-value=55 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=22.4
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
...||.|++ .+.+.. ..|...|-. ||..-.+.
T Consensus 8 iL~CP~ck~---------~L~~~~--~~~~LiC~~--cg~~YPI~ 39 (68)
T 2hf1_A 8 ILVCPLCKG---------PLVFDK--SKDELICKG--DRLAFPIK 39 (68)
T ss_dssp ECBCTTTCC---------BCEEET--TTTEEEETT--TTEEEEEE
T ss_pred heECCCCCC---------cCeEeC--CCCEEEcCC--CCcEecCC
Confidence 578999986 244332 358899999 98765554
No 46
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.55 E-value=57 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.3
Q ss_pred eecCCCCCCCCCCCCccceEEEEEcCCccEEEeCCccCCCCcccc
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQDGDFAMWRCFRVDCGWAGRAF 140 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~d~~~g~~~Cf~~~CG~~G~v~ 140 (380)
...||.|++ .+.+.. ..|...|-. ||..-.+.
T Consensus 8 iL~CP~ck~---------~L~~~~--~~~~LiC~~--cg~~YPI~ 39 (68)
T 2jr6_A 8 ILVCPVTKG---------RLEYHQ--DKQELWSRQ--AKLAYPIK 39 (68)
T ss_dssp CCBCSSSCC---------BCEEET--TTTEEEETT--TTEEEEEE
T ss_pred heECCCCCC---------cCeEeC--CCCEEEcCC--CCcEecCC
Confidence 468999986 244332 358899999 98765554
No 47
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.31 E-value=1e+02 Score=20.85 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=21.0
Q ss_pred eecCCCCCCCCCCCCccceEEEEE-----cCCccEEEeCCccCCCC
Q 042101 96 HLLCPKCKGGGRSLERSLSVHIIQ-----DGDFAMWRCFRVDCGWA 136 (380)
Q Consensus 96 ~~~CPfc~~~~~~~eks~s~~v~~-----d~~~g~~~Cf~~~CG~~ 136 (380)
...||.|+. +...|+-.. ++.+-+|.|-. ||..
T Consensus 9 ~~~Cp~Cg~------~~a~f~q~Q~RsaDE~mT~Fy~C~~--Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKK------KNCTYTQVQTRSADEPMTTFVVCNE--CGNR 46 (50)
T ss_dssp CSCCSSSCS------SCEEEEEECSSSSSSCCEEEEEESS--SCCE
T ss_pred ccCCCCCCC------CEEEEEEecCcCCCCCceEEEEcCC--CCCe
Confidence 468999986 222344322 23456899999 9874
No 48
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.93 E-value=28 Score=27.30 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=7.4
Q ss_pred eecCCCCCC
Q 042101 96 HLLCPKCKG 104 (380)
Q Consensus 96 ~~~CPfc~~ 104 (380)
.+.||+||.
T Consensus 47 g~~CPvCgs 55 (112)
T 1l8d_A 47 KGKCPVCGR 55 (112)
T ss_dssp SEECTTTCC
T ss_pred CCCCCCCCC
Confidence 468999985
Done!