BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042102
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/310 (65%), Positives = 242/310 (78%)
Query: 8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQXXXXXXXXXXXXELIE 67
I VLM+CP+S YLEQE++K FK+F+ W + F+ +SI+ ELI+
Sbjct: 24 IGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELID 83
Query: 68 SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESD 127
+LPKLEIV++ SVGLDK+DL +C+EKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D
Sbjct: 84 ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 143
Query: 128 RYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY 187
+YVR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++KPN NY
Sbjct: 144 KYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNY 203
Query: 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVS 247
YY ++++LASN ILVVAC LT ET HI+NR+VI+ALGPKGVLINIGRG VDE ELVS
Sbjct: 204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVS 263
Query: 248 XXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
DVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLVVGNL+AHF
Sbjct: 264 ALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
Query: 308 GKKPLLTPVV 317
KPLLTPVV
Sbjct: 324 SGKPLLTPVV 333
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 169/299 (56%), Gaps = 2/299 (0%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQXXXXXXXXXXXXELIESL 69
+L+V P ++ E+++++ V +L+ D+ + SI+ E E L
Sbjct: 33 LLLVEPXXPFVXDELQRNYSVHRLYQAADRPA-LEAALPSIRAVATGGGAGLSNEWXEKL 91
Query: 70 PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
P L I+A VG DK+DLAR + + I V TP VL DDVADL I L LAVLRR+ + DR
Sbjct: 92 PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRL 151
Query: 130 VRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK 188
VR G W GE + GK +G+LG+G+IG A+A RAEAF + Y +R+ +++
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWI 211
Query: 189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSX 248
+ + +DLA + +L V + + TQ+IV+ ++ ALGP+G+++N+ RG +VDE L+
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 249 XXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
DVF +EP + E N VL PH SATVETR A LV+ NL AHF
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAAHF 330
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 149/252 (59%), Gaps = 11/252 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E+ E+ PKL IVA +VG D ID+ ++GI V NTPDVLTD ADLA L+LA R +
Sbjct: 60 EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 124 CESDRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
+ DR+VRSGEWKK K+ GK++GI+G+GRIG AIAKRA+ F+ I Y
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYY 179
Query: 178 SRTEKP----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN 233
SRT K LN ++ P L DL +V+A LT ET H++N + + + +LIN
Sbjct: 180 SRTRKEEVERELNAEFKP-LEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILIN 238
Query: 234 IGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRK 293
I RG +VD + LV DVFE EP EEL L+NVVL PH+ SA+ R+
Sbjct: 239 IARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE 298
Query: 294 AMADLVVGNLQA 305
MA+LV NL A
Sbjct: 299 GMAELVAKNLIA 310
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 147/252 (58%), Gaps = 11/252 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E+ E+ PKL IVA +VG D ID+ ++GI V NTPDVLTD ADLA L+LA R +
Sbjct: 60 EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 124 CESDRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
+ DR+VRSGEWKK K+ GK++GI+G+GRIG AIAKRA+ F+ I Y
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYY 179
Query: 178 SRTEKP----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN 233
SRT K LN ++ P L DL +V+A LT ET H++N + + +LIN
Sbjct: 180 SRTRKEEVERELNAEFKP-LEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILIN 238
Query: 234 IGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRK 293
I RG +VD + LV DVFE EP EEL L+NVVL PH+ SA+ R+
Sbjct: 239 IARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE 298
Query: 294 AMADLVVGNLQA 305
A+LV NL A
Sbjct: 299 GXAELVAKNLIA 310
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 132/248 (53%), Gaps = 7/248 (2%)
Query: 72 LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR 131
L++++T SVG+D + L K++GIRV TPDVLTD A+LA+ L+L RR+ E+ V+
Sbjct: 77 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 136
Query: 132 SGEWK--KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNLNYK 188
+G W K + T +VGI+G+GRIG AIA+R + F Y R +P +
Sbjct: 137 NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE 196
Query: 189 YYPNLI---DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
+ + +LA+ +VVACSLT T+ + N+ + V INI RG +V++ +L
Sbjct: 197 FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDL 256
Query: 246 VSXXXXXXXXXXXXDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQ 304
DV EP L+ L+N V+LPH+ SAT TR M+ L NL
Sbjct: 257 YQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLL 316
Query: 305 AHFGKKPL 312
A +P+
Sbjct: 317 AGLRGEPM 324
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 130/248 (52%), Gaps = 6/248 (2%)
Query: 64 ELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
E+I L P L+ +AT SVG D ID A + GI+V +TPDVL+D A++A L+L RR
Sbjct: 86 EVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRR 145
Query: 123 ICESDRYVRSGEWKK-GEFK-MTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180
E+DR VRSG W G + + TG+ +GI G GRIG AIA RA F I Y++RT
Sbjct: 146 GYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRT 205
Query: 181 EKPNL---NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
+ Y+ L L I ++A E + ++ I + V+INI RG
Sbjct: 206 RLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG 265
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
L+++ L+ DVF +EP + L+N+ L PH+ SAT ETR A
Sbjct: 266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXGW 325
Query: 298 LVVGNLQA 305
L++ ++A
Sbjct: 326 LLIQGIEA 333
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 132/249 (53%), Gaps = 10/249 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E++E+ +L++++ S G D IDL ++GI V +L++ VA+ +GLI+ ++R+I
Sbjct: 57 EVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKI 116
Query: 124 CESDRYVRSGEWKKGE-----FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS 178
+D+++R GEW+ FK GK VGILGMG IG AIA+R F + Y S
Sbjct: 117 HYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS 176
Query: 179 RTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
R K N+ + Y ++ +L I+++A LT +T HI+N + + L K L+NIG
Sbjct: 177 RHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG 235
Query: 236 RGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLE-NVVLLPHVASATVETRKA 294
RG LVDE + DVFE EP EL E VL PH A +E ++
Sbjct: 236 RGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQED 295
Query: 295 MADLVVGNL 303
+ V NL
Sbjct: 296 VGFRAVENL 304
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 129/247 (52%), Gaps = 7/247 (2%)
Query: 72 LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR 131
L++++T SVG+D + L K++GIRV TPDVLTD A+LA+ L+L RR+ E+ V+
Sbjct: 75 LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 134
Query: 132 SGEWK--KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNLNYK 188
+G W K + T +VGI+G+GRIG AIA+R + F Y R +P +
Sbjct: 135 NGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE 194
Query: 189 YYPNLI---DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
+ + +LA+ +VVACSLT T+ + N+ V INI RG +V++ +L
Sbjct: 195 FQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDL 254
Query: 246 VSXXXXXXXXXXXXDVFEHEP-DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQ 304
DV EP L+ L+N V+LPH+ SAT TR + L NL
Sbjct: 255 YQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLLAANNLL 314
Query: 305 AHFGKKP 311
A +P
Sbjct: 315 AGLRGEP 321
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 130/253 (51%), Gaps = 8/253 (3%)
Query: 64 ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
E+I+ +P+ ++ ++T S+G D IDL CK +GI+V N P +T A++A+ L+L RR
Sbjct: 59 EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 123 ICESDRYVRSGEWKKGE--FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY---- 176
E ++ +R+ W E + K K++GI G G IG A+AKRA+ FD I Y
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 177 -NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
S +++ + ++ +L L S Q + T ET++ N+ I +L +++N
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 236 RGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAM 295
RG LVD +V+ DVF EP++ E L N L PH+ SA + R+ M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 296 ADLVVGNLQAHFG 308
A + A FG
Sbjct: 299 AHQANDLIDALFG 311
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 140/265 (52%), Gaps = 10/265 (3%)
Query: 35 HFEDKEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKG 94
+ D+++ + KD ++ +IES PKL+++A VGLD ID+ KEKG
Sbjct: 31 EYPDEDRLVELVKD-VEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKG 89
Query: 95 IRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL 154
I V N P + VA+LA+GL+ +V R+I +DR +R G W K E M + GK++GI+
Sbjct: 90 IEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-AMGIELEGKTIGII 148
Query: 155 GMGRIGTAIAKRAEAFDCII----GYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLT 210
G GRIG +AK A A I Y + +N K+ +L L ++ + L
Sbjct: 149 GFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIHVPLV 207
Query: 211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPE 270
E T H++N + + + +LIN RG +VD + LV DVFE EP +P+
Sbjct: 208 ESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP-LPK 266
Query: 271 E--LIGLENVVLLPHVASATVETRK 293
+ L +NVVL PH+ ++TVE ++
Sbjct: 267 DHPLTKFDNVVLTPHIGASTVEAQE 291
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 7/252 (2%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E+++ L+++A SVG+D +DL +E+GIRV +TP VLT+ ADL + L+LAV RR+
Sbjct: 58 EVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRV 117
Query: 124 CESDRYVRSGEWK--KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
E Y R G WK E + G ++G++GMGRIG A+AKRA AF + Y++RT
Sbjct: 118 VEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP 177
Query: 182 KPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241
KP L Y + +L +L ++ + LT ET ++NR+ + A+ +L+N RG LVD
Sbjct: 178 KP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD 235
Query: 242 EHELVSXXXXXXXXXXXXDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVV 300
LV DV + EP P L L N V+ PH+ SA TR+ MA++ V
Sbjct: 236 TEALVE-ALRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAV 294
Query: 301 GNLQAHF-GKKP 311
NL A G++P
Sbjct: 295 ENLLAVLEGREP 306
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 8/234 (3%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++I + KL++V G+D +DL KGI V NTP+ + A+L G+I+ + R+I
Sbjct: 82 DVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQI 141
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
++ ++ G+W++ +F M T+ GK++GILG+GRIG +A R ++F IGY+ S
Sbjct: 142 PQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV-LINIGRGL 238
+ + P L ++ C + V L T ++N A KGV ++N RG
Sbjct: 201 EVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGG 258
Query: 239 LVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
+VDE L+ DVF EP L+ ENV+ PH+ ++T E +
Sbjct: 259 IVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQ 312
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39 KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
+E+ + +D+ Q + +++ P+L ++ G D D+ C +G+ +
Sbjct: 36 REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99 NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
PD+LT A+LAIGL + + R + +D +VRSG+++ + + T +VG LGMG
Sbjct: 95 FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGYNSR------TEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
IG A+A R + + + Y++R TE+ L + +L ++ +++A L
Sbjct: 155 AIGLAMADRLQGWGATLQYHARKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
+T H+VN +++ + P +L+N RG +VDE +++ DVFE E D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
P++ L+ N + PH+ SA R + N LQA G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39 KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
+E+ + +D+ Q + +++ P+L ++ G D D+ C +G+ +
Sbjct: 36 REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99 NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
PD+LT A+LAIGL + + R + +D +VRSG+++ + + T +VG LGMG
Sbjct: 95 FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGYNSR------TEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
IG A+A R + + + Y++R TE+ L + +L ++ +++A L
Sbjct: 155 AIGLAMADRLQGWGATLQYHARKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
+T H+VN +++ + P +L+N RG +VDE +++ DVFE E D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
P++ L+ N + PH+ SA R + N LQA G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39 KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
+E+ + +D+ Q + +++ P+L ++ G D D+ C +G+ +
Sbjct: 36 REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99 NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
PD+LT A+LAIGL + + R + +D +VRSG+++ + + T +VG LGMG
Sbjct: 95 FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGY------NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
IG A+A R + + + Y +++TE+ L + +L ++ +++A L
Sbjct: 155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
+T H+VN +++ + P +L+N RG +VDE +++ DVFE E D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
P++ L+ N + PH+ SA R + N LQA G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 19/290 (6%)
Query: 39 KEQFINTHKDSIQXXXXXXXXXXXXELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA 98
+E+ + +D+ Q + +++ P+L ++ G D D+ C +G+ +
Sbjct: 36 REEILRRCRDA-QAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLT 94
Query: 99 NTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMG 157
PD+LT A+LAIGL + + R + +D +VRSG+++ + + T +VG LGMG
Sbjct: 95 FVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG 154
Query: 158 RIGTAIAKRAEAFDCIIGY------NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE 211
IG A+A R + + + Y +++TE+ L + +L ++ +++A L
Sbjct: 155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNA 212
Query: 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHE----PD 267
+T H+VN +++ + P +L+N RG +VDE +++ DVFE E D
Sbjct: 213 DTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARAD 272
Query: 268 VPEE----LIGLENVVLLPHVASATVETRKAMADLVVGN-LQAHFGKKPL 312
P++ L+ N + PH+ SA R + N LQA G++P+
Sbjct: 273 RPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 6/233 (2%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E++ + PKL+IVA VGLD +D+ +G+ V N P A+ A+ L+LA R+I
Sbjct: 58 EVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQI 117
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
+D +R WK+ F T F GK+VG++G+GRIG +A+R AF ++ Y+ S
Sbjct: 118 PAADASLREHTWKRSSFSGTEIF-GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 176
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
L + +L DL + + V T ET +++++ + P +++N RG L
Sbjct: 177 ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 235
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
VDE L DVF EP L L VV+ PH+ ++T E +
Sbjct: 236 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 288
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 6/233 (2%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E++ + PKL+IVA VGLD +D+ +G+ V N P A+ A+ L+LA R+I
Sbjct: 59 EVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQI 118
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
+D +R WK+ F T F GK+VG++G+GRIG +A+R AF ++ Y+ S
Sbjct: 119 PAADASLREHTWKRSSFSGTEIF-GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 177
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
L + +L DL + + V T ET +++++ + P +++N RG L
Sbjct: 178 ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGL 236
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
VDE L DVF EP L L VV+ PH+ ++T E +
Sbjct: 237 VDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 289
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 132/265 (49%), Gaps = 18/265 (6%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
+ +++ P+L ++ G D D+ C +G+ + PD+LT A+LAIGL + + R +
Sbjct: 61 DFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHL 120
Query: 124 CESDRYVRSGEWKKGEFKM-TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY------ 176
+D +VRSG+++ + + T +VG LG G IG A A R + + + Y
Sbjct: 121 RAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKAL 180
Query: 177 NSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236
+++TE+ L + +L ++ +++A L +T H+VN +++ + P +L+N R
Sbjct: 181 DTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 238
Query: 237 GLLVDEHELVSXXXXXXXXXXXXDVFEHE----PDVPEE----LIGLENVVLLPHVASAT 288
G +VDE +++ DVFE E D P++ L+ N + PH+ SA
Sbjct: 239 GSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 298
Query: 289 VETRKAMADLVVGN-LQAHFGKKPL 312
R + N LQA G++P+
Sbjct: 299 RAVRLEIERCAAQNILQALAGERPI 323
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 125/247 (50%), Gaps = 11/247 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++IE KL+I+A +GLD ID +++ I+V P TD +L IGL++A R++
Sbjct: 61 DVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGY---NSR 179
S +SG +KK E + GK++GI+G GRIGT + A A ++ Y + R
Sbjct: 121 YTSMALAKSGIFKKIE---GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ +N K +L +L N ++ + +++++ + I++ + +++N R +
Sbjct: 178 EKAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVA 236
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPE---ELIGLENVVLLPHVASATVETRKAMA 296
V+ L+ DVF +EP E EL+ E V++ H+ + T E +K +A
Sbjct: 237 VNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVA 296
Query: 297 DLVVGNL 303
++ NL
Sbjct: 297 EMTTQNL 303
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 20/270 (7%)
Query: 64 ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
+LI LP L++ A G D +DL E+G+ AN+ +DLA+ LIL+V R
Sbjct: 72 DLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRL 131
Query: 123 ICESDRYVRSGEWKKGEFKMTTKFTGKS--------VGILGMGRIGTAIAKRAE------ 168
S+R R+G+ + F GKS +G +G+G I IA++A
Sbjct: 132 ASYSERAARTGDPET--FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 169 -AFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
+ + ++ TEK L + +L +LA + V+ + T H+++ A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 228 KGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASA 287
++N RG ++ + L++ DV E EP+V +ELI +++V L H+
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGV 308
Query: 288 TVETRKAMADLVVGNLQAHFGK-KPLLTPV 316
+ET L + N+ + KPLLTP
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 64 ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
+LI LP L++ A G D +DL E+G+ AN+ +DLA+ LIL+V R
Sbjct: 72 DLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRL 131
Query: 123 ICESDRYVRSGEWKKGEFKMTTKFTGKS--------VGILGMGRIGTAIAKRAE------ 168
S+R R+G+ + F GKS +G +G+G I IA++A
Sbjct: 132 ASYSERAARTGDPET--FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 169 -AFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
+ + ++ TEK L + +L +LA + V+ + T H+++ A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 228 KGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASA 287
++N RG ++ + L++ DV E EP V +ELI +++V L H+
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 288 TVETRKAMADLVVGNLQAHFGK-KPLLTPV 316
+ET L + N+ + KPLLTP
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 64 ELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR 122
++I LP L++ A G D +DL E+G+ AN+ +DLA+ LIL+V R
Sbjct: 72 DIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRL 131
Query: 123 ICESDRYVRSGEWKKGEFKMTTKFTGKS--------VGILGMGRIGTAIAKRAE------ 168
S+R R+G+ + F GKS +G +G+G I IA++A
Sbjct: 132 ASYSERAARTGDPET--FNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 169 -AFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
+ + ++ TEK L + +L +LA + V+ + T H+++ A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 228 KGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASA 287
++N RG ++ + L++ DV E EP V +ELI +++V L H+
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 288 TVETRKAMADLVVGNLQAHFGK-KPLLTPV 316
+ET L + N+ + KPLLTP
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 24/244 (9%)
Query: 79 SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
+VG D ID+ K+ GIR++N P +A+ A+ L +LR + + +++G+++K
Sbjct: 76 NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA 135
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNS---RTEKPNLNYKYYPNLI 194
+ + ++VG++G G IG K + F +I Y+ + + P+ +Y +L
Sbjct: 136 GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV---SLE 192
Query: 195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXX 254
DL ++ + E+ HI+N N + P ++IN R L+D ++S
Sbjct: 193 DLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252
Query: 255 XXXXXDVFEHEPD--------------VPEELIGLENVVLLPHVASATVETRKAMADLVV 300
D +E+E + + +EL+G+ NVVL PH+A T A+ ++V
Sbjct: 253 AGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA---YYTETAVHNMVY 309
Query: 301 GNLQ 304
+LQ
Sbjct: 310 FSLQ 313
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 7/246 (2%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E+ + +L V SVG ++++L +++GI V N P T VA+L IG I+ ++RRI
Sbjct: 73 EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI 132
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
+G W+K + + GK++GI+G G IG+ + AE+ + Y ++K
Sbjct: 133 FPRSVSAHAGGWEKTAIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKL 191
Query: 184 NL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDE 242
N K +L +L ++ + ++ T ++ + + LIN RG VD
Sbjct: 192 QYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL 251
Query: 243 HELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKAMAD 297
L DVF EP E L GLENV+L PH+ +T E ++ +
Sbjct: 252 EALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGT 311
Query: 298 LVVGNL 303
V L
Sbjct: 312 EVTRKL 317
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 26/267 (9%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
EL+ P+L+++ T SVG D IDL CK+KGI V + P + VA+ IL +++R+
Sbjct: 57 ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
+ V+ + + + + ++G++G GRIG+ +A AF + ++
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 184 NLNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241
+L K Y +L +L ++ + T+ET H +N + I+ LIN RG +VD
Sbjct: 177 DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVD 236
Query: 242 EHELVSXXXXXXXXXXXXDVFEHE-----PDVPE-----------ELIGLENVVLLPHVA 285
L DVFE E E EL +NV++ PH+A
Sbjct: 237 TDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA 296
Query: 286 SAT--------VETRKAMADLVVGNLQ 304
T ET K + V G+L+
Sbjct: 297 YYTDKSLERIREETVKVVKAFVKGDLE 323
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 13/249 (5%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++I + KL + ++G +++DL ++GI V N P T VA+L IG +L +LR +
Sbjct: 68 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
E++ G W K G F+ GK +GI+G G IGT + AE+ + Y+
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ P N +L DL + ++ + T++++ + I+ + P +LIN RG +
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
VD L DVF EP + L +NV+L PH+ +T E ++
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 295 MADLVVGNL 303
+ V G L
Sbjct: 304 IGLEVAGKL 312
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 13/249 (5%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++I + KL + ++G +++DL ++GI V N P T VA+L IG +L +LR +
Sbjct: 68 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
E++ G W K G F+ GK +GI+G G IGT + AE+ + Y+
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ P N +L DL + ++ + T++++ + I+ + P +LIN RG +
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
VD L DVF EP + L +NV+L PH+ +T E ++
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 295 MADLVVGNL 303
+ V G L
Sbjct: 304 IGLEVAGKL 312
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E +E L I+ G D ID+ + GI V N P ++ AD + IL + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
+ +R G E + + G+++GI+G+GR+G A+A RA+AF G+N
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAF----GFN 196
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
P L+ + L DL + + + C L E H++N + +
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
L+N RG LVDE L DV E EP + L N++ PH A
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 316
Query: 286 --SATVETRKAMA 296
A++E R+ A
Sbjct: 317 SEQASIEMREEAA 329
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E +E L I+ G D ID+ + GI V N P ++ AD + IL + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
+ +R G E + + G+++GI+G+GR+G A+A RA+AF G+N
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAF----GFN 196
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
P L+ + L DL + + + C L E H++N + +
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
L+N RG LVDE L DV E EP + L N++ PH A
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 316
Query: 286 --SATVETRKAMA 296
A++E R+ A
Sbjct: 317 SEQASIEMREEAA 329
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 11/258 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E I PKL++ T +G D +DL + I VA ++ VA+ + ++L ++R
Sbjct: 106 ERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNY 165
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
S + R+G W + + G VG + GRIG + + FD + Y R
Sbjct: 166 IPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRL 225
Query: 183 P-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
P LN ++ D+ C ++ + C L ET+H++N + + L+N RG
Sbjct: 226 PEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARG 285
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
L D +V DV+ +P D P + + + PH++ ++ +
Sbjct: 286 KLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT--MPHNGMTPHISGTSLSAQTR 343
Query: 295 MADLVVGNLQAHFGKKPL 312
A L+ +F +P+
Sbjct: 344 YAAGTREILECYFEGRPI 361
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 11/258 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E I PKL++ T +G D +DL + I VA ++ VA+ + ++L ++R
Sbjct: 107 ERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNY 166
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
S + R+G W + + G VG + GRIG + + FD + Y R
Sbjct: 167 IPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRL 226
Query: 183 P-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
P LN ++ D+ C ++ + C L ET+H++N + + L+N RG
Sbjct: 227 PEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARG 286
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
L D +V DV+ +P D P + + + PH++ ++ +
Sbjct: 287 KLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT--MPHNGMTPHISGTSLSAQTR 344
Query: 295 MADLVVGNLQAHFGKKPL 312
A L+ +F +P+
Sbjct: 345 YAAGTREILECYFEGRPI 362
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E +E L I+ G D ID+ + GI V N P ++ AD + IL + RR
Sbjct: 78 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
+ +R G E + + G+++GI+G+GR+G A+A RA+AF G+N
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAF----GFN 193
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
P L+ + L DL + + + C L E H++N + +
Sbjct: 194 VLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 253
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
L+N RG LVDE L DV E EP + L N++ PH A
Sbjct: 254 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 313
Query: 286 --SATVETRKAMA 296
A++E R+ A
Sbjct: 314 SEQASIEMREEAA 326
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 18/250 (7%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRR- 122
E +E L ++ G D +D+ E GI V N P ++ AD I IL + RR
Sbjct: 62 EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 123 ------ICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD-CIIG 175
+ E R V+S E + + G+++G++G GR G A+A RA+AF +I
Sbjct: 122 TWLYQALREGTR-VQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIF 180
Query: 176 YNSRTE---KPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
Y+ + + +L + L DL + + C+L E H++N I + L+
Sbjct: 181 YDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLV 240
Query: 233 NIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA----S 286
N RG LVDE L DV E EP + L N++ PH A
Sbjct: 241 NAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQ 300
Query: 287 ATVETRKAMA 296
A++E R+A A
Sbjct: 301 ASLEMREAAA 310
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 13/249 (5%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++I + KL + +G +++DL ++GI V N P T VA+L IG +L +LR +
Sbjct: 67 DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 126
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
E++ G W K G F+ GK +GI+G G IGT + AE+ + Y+
Sbjct: 127 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 182
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ P N +L DL + ++ + T++++ + I+ + P +LIN RG +
Sbjct: 183 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 242
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
VD L DVF EP + L +NV+L PH+ +T E ++
Sbjct: 243 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 302
Query: 295 MADLVVGNL 303
+ V G L
Sbjct: 303 IGLEVAGKL 311
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 24/253 (9%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E +E L I+ G D ID+ + GI V N P ++ AD + IL + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 124 CESDRYVRSG------EWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN 177
+ +R G E + + G+++GI+G+ R+G A+A RA+AF G+N
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAF----GFN 196
Query: 178 SRTEKPNLN--------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229
P L+ + L DL + + + C L E H++N + +
Sbjct: 197 VLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA 256
Query: 230 VLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVA-- 285
L+N RG LVDE L DV E EP + L N++ PH A
Sbjct: 257 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY 316
Query: 286 --SATVETRKAMA 296
A++E R+ A
Sbjct: 317 SEQASIEMREEAA 329
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++I + KL + +G +++DL ++GI V N P T VA+L IG +L +LR +
Sbjct: 68 DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
E++ G W K G F+ GK +GI+G G IGT + AE+ + Y+
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 183
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ P N +L DL + ++ + T++ + I+ P +LIN RG +
Sbjct: 184 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 243
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
VD L DVF EP + L +NV+L PH+ +T E ++
Sbjct: 244 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 303
Query: 295 MADLVVGNL 303
+ V G L
Sbjct: 304 IGLEVAGKL 312
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 11/258 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E I L++ T +G D +DL ++ + VA + VA+ + +IL+++R
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
S + R G W + VG + GRIG A+ +R FD + Y R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 183 PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
P LN ++ D+ C ++ + C L ET+H++N + + ++N RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
L D + DV+ +P D P + + PH++ T+ +
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQAR 344
Query: 295 MADLVVGNLQAHFGKKPL 312
A L+ F +P+
Sbjct: 345 YAAGTREILEXFFEGRPI 362
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 11/258 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E I L++ T +G D +DL ++ + VA + VA+ + +IL+++R
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
S + R G W + VG + GRIG A+ +R FD + Y R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 183 PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
P LN ++ D+ C ++ + C L ET+H++N + + ++N RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
L D + DV+ +P D P + + PH++ T+ +
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQAR 344
Query: 295 MADLVVGNLQAHFGKKPL 312
A L+ F +P+
Sbjct: 345 YAAGTREILECFFEGRPI 362
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 11/258 (4%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E I L++ T +G D +DL ++ + VA + VA+ + +IL+++R
Sbjct: 106 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 165
Query: 124 CESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182
S + R G W + VG + GRIG A+ +R FD + Y R
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 225
Query: 183 PN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
P LN ++ D+ C ++ + C L ET+H++N + + ++N RG
Sbjct: 226 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 285
Query: 238 LLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
L D + DV+ +P D P + + PH++ T+ +
Sbjct: 286 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTLTAQAR 343
Query: 295 MADLVVGNLQAHFGKKPL 312
A L+ F +P+
Sbjct: 344 YAAGTREILECFFEGRPI 361
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 13/241 (5%)
Query: 77 TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK 136
T +G D IDL G+ VA VA+ + IL ++R V GEW
Sbjct: 92 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 137 -KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-KPNL----NYKYY 190
G GK++G +G GRIG + +R + F C + Y+ R + P L K+
Sbjct: 152 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 211
Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSXX 249
+L ++ C ++V+ LTE+T+ + N+++I L KGVLI N RG +++ +V
Sbjct: 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNARGAIMERQAVVDAV 270
Query: 250 XXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
DV++ +P D P + N + PH + T++ + A L+ +
Sbjct: 271 ESGHIGGYSGDVWDPQPAPKDHPWRY--MPNQAMTPHTSGTTIDAQLRYAAGTKDMLERY 328
Query: 307 F 307
F
Sbjct: 329 F 329
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 13/241 (5%)
Query: 77 TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK 136
T +G D IDL G+ VA VA+ + IL ++R V GEW
Sbjct: 98 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 137 -KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-KPNL----NYKYY 190
G GK++G +G GRIG + +R + F C + Y+ R + P L K+
Sbjct: 158 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 217
Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSXX 249
+L ++ C ++V+ LTE+T+ + N+++I L KGVLI N RG +++ +V
Sbjct: 218 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNARGAIMERQAVVDAV 276
Query: 250 XXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306
DV++ +P D P + N + PH + T++ + A L+ +
Sbjct: 277 ESGHIGGYSGDVWDPQPAPKDHPWRY--MPNQAMTPHTSGTTIDAQLRYAAGTKDMLERY 334
Query: 307 F 307
F
Sbjct: 335 F 335
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++I + KL + ++G +++DL ++GI V N P T VA+L IG +L +LR +
Sbjct: 62 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 124 CESDRYVRSGEWKK---GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSR 179
E++ G K G F+ GK +GI+G G IGT + AE+ + Y+
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 177
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ P N +L DL + ++ + T++ + I+ P +LIN RG +
Sbjct: 178 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 237
Query: 240 VDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE-----LIGLENVVLLPHVASATVETRKA 294
VD L DVF EP + L +NV+L PH+ +T E ++
Sbjct: 238 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 297
Query: 295 MADLVVGNL 303
+ V G L
Sbjct: 298 IGLEVAGKL 306
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 19/246 (7%)
Query: 64 ELIESLPKLEIVA-TCSVGLDK---IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV 119
+L++ LPKL+I++ T V D IDL C +KG+ V A+L L++A
Sbjct: 64 QLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP-AELTWALVMAA 122
Query: 120 LRRICESDRYVRSGEWKKGEFKMTTK---------FTGKSVGILGMGRIGTAIAKRAEAF 170
RRI + ++ G W++ K TT G+++GI G G+IG +A AF
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 171 DC---IIGYNSRTEKPNLN-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALG 226
+ G + E+ + + + L +L V L +ET+ I+ + +
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 227 PKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVP-EELIGLENVVLLPHVA 285
P + +N R LV+E+ +V+ DVFE EP + L+ +EN + PH+
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302
Query: 286 SATVET 291
E+
Sbjct: 303 YVERES 308
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 12/246 (4%)
Query: 71 KLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV 130
+L+ V S G+D + L + G+ VANT + D +++ + +L+V+R +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 131 RSGEWKKGEFKMTTK-FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK 188
R ++ MTT TG+ + I G G+IG ++A +A A +IG N+ T P ++
Sbjct: 121 RGA--RQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNT-TGHPADHFH 177
Query: 189 ---YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
+ D + +V A LT T H+ + ++ + +LINIGRG VD L
Sbjct: 178 ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTAL 237
Query: 246 VSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADLVVGNL 303
++ DV E EP +P + L ++V++ PH++ R + + N
Sbjct: 238 MTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296
Query: 304 QAHFGK 309
A F K
Sbjct: 297 -AQFVK 301
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 12/225 (5%)
Query: 65 LIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
L+ KL + G+D + ARC+ + ++ N + +++ G +L+++R++
Sbjct: 61 LLAKANKLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLP 119
Query: 125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT--EK 182
+ W+ ++ G+++ ILG G IG IA + F + SR+ E+
Sbjct: 120 LYREQQKQRLWQSHPYQ---GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRER 176
Query: 183 PNLNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241
+ Y P L + + ++V T ET H+ P +L N+GRG ++
Sbjct: 177 AGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 242 EHELVSXXXXXXXXXXXXDVFEHEP---DVPEELIGLENVVLLPH 283
E +L++ DVFE EP D P L G N+++ PH
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSP--LWGQPNLIITPH 279
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 16/249 (6%)
Query: 72 LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVR 131
++ + T + G D ID KE G +A P + +A+LA+ + +LR +
Sbjct: 70 VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTA 129
Query: 132 SGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKYY 190
+K F + + +VG++G+GRIG A+ +IG + K +Y
Sbjct: 130 KKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQ 189
Query: 191 PNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXX 250
+L ++ I+ + +E +V R + + +L+N RG LVD ++
Sbjct: 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE 249
Query: 251 XXXXXXXXXDVFEHEPDV-PEELIG--LEN------------VVLLPHVASATVETRKAM 295
DV + E V ++L G LEN V++ PH+ S T E K M
Sbjct: 250 SGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNM 309
Query: 296 ADLVVGNLQ 304
++ NL+
Sbjct: 310 VEVSYQNLK 318
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 17/233 (7%)
Query: 79 SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
+VG+D ID+A+ KE G ++ N P + +A+ A +LR+ D V + +
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK--YYPNLIDL 196
+ + + VG++G G IG + E F + P L K Y +L DL
Sbjct: 138 P-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDL 196
Query: 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXX 256
++ + H++N + I + V++N+ RG LVD ++
Sbjct: 197 YKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG 256
Query: 257 XXXDVFEHE-------------PDVP-EELIGLENVVLLPHVASATVETRKAM 295
DV+E E PD +LI NV++ PH A T + M
Sbjct: 257 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNM 309
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 17/233 (7%)
Query: 79 SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
+VG+D ID+A+ KE G ++ N P + +A+ A +LR+ D V + +
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK--YYPNLIDL 196
+ + + VG++G G IG + E F + P L K Y +L DL
Sbjct: 138 P-TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDL 196
Query: 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXX 256
++ + H++N + I + V++N+ RG LVD ++
Sbjct: 197 YKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG 256
Query: 257 XXXDVFEHE-------------PDVP-EELIGLENVVLLPHVASATVETRKAM 295
DV+E E PD +LI NV++ P A T + M
Sbjct: 257 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNM 309
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 104/253 (41%), Gaps = 24/253 (9%)
Query: 79 SVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV--RSGEWK 136
+VG+D ID+ + KE G ++ N P + +A+ A VLR+ D + R W
Sbjct: 78 NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWA 137
Query: 137 KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK--YYPNL 193
+ + + VG++G G IG + E F +I Y+ + P L K Y +L
Sbjct: 138 P---TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDI-FKNPELEKKGYYVDSL 193
Query: 194 IDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXX 253
DL ++ + H++N + I + V++N RG LVD ++
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGK 253
Query: 254 XXXXXXDVFEHE----------PDVPE----ELIGLENVVLLPHVASATVET-RKAMADL 298
D +E E + P+ +LI NV++ PH A T R +
Sbjct: 254 IFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKA 313
Query: 299 VVGNLQAHFGKKP 311
NL+ G+KP
Sbjct: 314 FNNNLKLINGEKP 326
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 6/231 (2%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E + P+L+ + + GLD + + VA D VA+ A+ L+LA +RI
Sbjct: 43 EELAKXPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKRI 101
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
+ + G++ G G+ V +LG+G IGT + K A + SRT K
Sbjct: 102 IQYGEKXKRGDY--GRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE 159
Query: 184 NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243
+++ +L + + V A L + T+ +V Q + V +N+GR ++D
Sbjct: 160 G-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRD 218
Query: 244 ELVSXXXXXXXXXXXXDVFEHEPDVPE--ELIGLENVVLLPHVASATVETR 292
++ DV+ D + E L NVV P VA R
Sbjct: 219 GVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNER 269
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 71 KLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYV 130
+ + + S G+D ID+ E + +N + VA+ A L+LA + I E++
Sbjct: 49 RTKXIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELX 107
Query: 131 RSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKY 189
++G +++ TT GK++GILG G IG +A A+AF +I Y + N++
Sbjct: 108 KAGIFRQSP---TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDV-I 163
Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXX 249
+ DL +++A LT++T+ VN +++ ++N+ R +V + + +
Sbjct: 164 SESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFL 223
Query: 250 XXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVA 285
DV+ +EP++ E L N +L PHVA
Sbjct: 224 KERSDVWYLSDVWWNEPEITE--TNLRNAILSPHVA 257
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 37/256 (14%)
Query: 65 LIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
L+ P + V T + G D +D A K+ GI + P V + + + L +
Sbjct: 56 LLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEY----VFSALLXLA 110
Query: 125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD-----CIIGYNSR 179
E D + +++GI+G+G +G+ + R EA C +R
Sbjct: 111 ERDGF---------------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR 155
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIG 235
++ + + L +L +L L ++ T H+ + +I L P +LIN
Sbjct: 156 GDEGD-----FRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINAC 210
Query: 236 RGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEELIGLENV-VLLPHVASATVETRKA 294
RG +VD L++ DV+E EPD+ L LE V + H+A T+E +
Sbjct: 211 RGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVAL--LEAVDIGTSHIAGYTLEGKAR 268
Query: 295 MADLVVGNLQAHFGKK 310
V A G++
Sbjct: 269 GTTQVFEAYSAFIGRE 284
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 21/265 (7%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA----NTPDVLTDDVADLAIGLILAV 119
E I+ KL++V VG D IDL + G +++ +V++ VA+ + +L +
Sbjct: 77 ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 134
Query: 120 LRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGY 176
+R + + + +W+ K GK++ +G GRIG + +R F+ ++ Y
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 177 N----SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
+ + + + + N+ +L + I+ V L T+ ++N+++++ L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 233 NIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVP----EELIGLENVVLLPHVA 285
N RG + ++ + DV+ +P D P G N + PH +
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 313
Query: 286 SATVETRKAMADLVVGNLQAHFGKK 310
T++ + A V L++ F K
Sbjct: 314 GTTLDAQTRYAQGTVNILESFFTGK 338
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 110 DLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEA 169
+ A+ +L RR + WK +F SVGI G G +G +A+ +A
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEF---SVGIXGAGVLGAKVAESLQA 160
Query: 170 FDCIIGYNSRTEKPNLNYKYY---PNLIDLASNCQILVVACSLTEETQHIVNRQVINALG 226
+ + SR+ K + Y L + ++L+ T +T I+N ++++ L
Sbjct: 161 WGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLP 220
Query: 227 PKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEPDVPEE--LIGLENVVLLPHV 284
++N+ RG+ V E +L++ DVF EP +P+E L V PH+
Sbjct: 221 DGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPHI 279
Query: 285 ASAT 288
A+ T
Sbjct: 280 AAVT 283
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 28/241 (11%)
Query: 80 VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE-SDRYVRSGEWKKG 138
VG + I+ K+ + V N P +A++ + + +LR+I E R ++
Sbjct: 79 VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAK-------RAEAFDCIIGYNSRTEKPNLNYKYYP 191
++ + +VG++G+G IG+A+A+ + A+D + YN E P L Y +
Sbjct: 139 SNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYD--VAYNPEFE-PFLTYTDFD 195
Query: 192 NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXX 251
++ A I+ + L T++++ + + + LIN RG LVD L+
Sbjct: 196 TVLKEA---DIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD 252
Query: 252 XXXXXXXXDV-------FEH----EPDVPEE---LIGLENVVLLPHVASATVETRKAMAD 297
D F H + ++PE+ L + NVV+ PH A T + + M
Sbjct: 253 GEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQ 312
Query: 298 L 298
+
Sbjct: 313 I 313
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 113/265 (42%), Gaps = 21/265 (7%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVA----NTPDVLTDDVADLAIGLILAV 119
E I+ KL++V VG D IDL + G +++ +V++ VA+ + +L +
Sbjct: 78 ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 135
Query: 120 LRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGY 176
+R + + + +W+ K GK++ +G GRIG + +R F+ ++ Y
Sbjct: 136 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 195
Query: 177 N----SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
+ + + + + N+ +L + I+ V L T+ ++N+++++ L+
Sbjct: 196 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 255
Query: 233 NIGRGLLVDEHELVSXXXXXXXXXXXXDVFEHEP---DVP----EELIGLENVVLLPHVA 285
N RG + ++ + DV+ +P D P G N + PH +
Sbjct: 256 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 314
Query: 286 SATVETRKAMADLVVGNLQAHFGKK 310
T++ + A L++ F K
Sbjct: 315 GTTLDAQTRYAQGTKNILESFFTGK 339
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 19/221 (8%)
Query: 92 EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSG-EWKKGEFKMTTKF-TGK 149
++GI V T V + VA++ +G LA+ R I ++D + G E GE + + G
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGS 177
Query: 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYKYYPNLIDLASNCQI 202
+GI+G G +G A+ + F I R P L N +L D+ +
Sbjct: 178 EIGIVGFGDLGKALRRVLSGFRARI----RVFDPWLPRSXLEENGVEPASLEDVLTKSDF 233
Query: 203 LVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSXXXXXXXXXXXXDVF 262
+ V ++T E + + + ++ I + R +VD + + DV+
Sbjct: 234 IFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVD-FDALXAAVSSGHIVAASDVY 292
Query: 263 EHEP---DVPEELIGLENVVLLPHVASATVETRKAMADLVV 300
EP D P + L+ + H A A K D V+
Sbjct: 293 PEEPLPLDHP--VRSLKGFIRSAHRAGALDSAFKKXGDXVL 331
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 72 LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV--LRRICESDRY 129
+ V TC++G D +DL E GI ++ P V D +G +LA+ +R ++R
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERT 118
Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKY 189
+ ++ G +L + + +P+ +
Sbjct: 119 YGVVGAGQVGGRLVEVLRGLGWKVL------------------VCDPPRQAREPDGEFV- 159
Query: 190 YPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
+L L + ++ + L + T+H+++ + AL P L+N RG +VD L
Sbjct: 160 --SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 246 VSXXXXXXXXXXXXDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292
DV+E EP EL ++ PH+A ++E +
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGK 263
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E+ ++ E++A CS K + + ++ PD+ + ++ L V ++
Sbjct: 107 EIFDTYIMKELLA-CSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKF 165
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVG-ILGMGRIGTAIAKR 166
ESD++ R +WK E + SV I+G G G R
Sbjct: 166 IESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCR 209
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 64 ELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
E+ ++ E++A CS K + + ++ PD+ + ++ L V ++
Sbjct: 107 EIFDTYIMKELLA-CSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKF 165
Query: 124 CESDRYVRSGEWKKGEFKMTTKFTGKSVG-ILGMGRIGTAIAKR 166
ESD++ R +WK E + SV I+G G G R
Sbjct: 166 IESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCR 209
>pdb|3KWL|A Chain A, Crystal Structure Of A Hypothetical Protein From
Helicobacter Pylori
Length = 514
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 66 IESLPKLEIVATCSVGLDKIDLARCKEKGI--RVANTPDVLTDDVADLAIGLILAVLRRI 123
++SL K + G IDL C + G ++ +T D LT +LA+ V
Sbjct: 266 VQSLLKSAKLYLEKXGQKTIDLPFCYDGGYYGKIISTHDFLTASAYNLALAKANGVSLIF 325
Query: 124 CESDRYV 130
CE D Y+
Sbjct: 326 CEEDAYL 332
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 144 TKFT--GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSR 179
T FT G +V +LG+GR+G ++A++ A + +R
Sbjct: 149 TDFTIHGANVAVLGLGRVGXSVARKFAALGAKVKVGAR 186
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 101 PDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVG-ILGMGRI 159
PD+ + ++ L V ++ ESD++ R +WK E + SV I+G G
Sbjct: 142 PDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGF 201
Query: 160 GTAIAKR 166
G R
Sbjct: 202 GEVYGCR 208
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 101 PDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVG-ILGMGRI 159
PD+ + ++ L V ++ ESD++ R +WK E + SV I+G G
Sbjct: 143 PDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGF 202
Query: 160 GTAIAKR 166
G R
Sbjct: 203 GEVYGCR 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,500,048
Number of Sequences: 62578
Number of extensions: 318629
Number of successful extensions: 912
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 77
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)