Query 042102
Match_columns 317
No_of_seqs 226 out of 1756
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15409 bifunctional glyoxyla 100.0 9.2E-74 2E-78 537.1 36.1 311 6-317 1-319 (323)
2 COG0111 SerA Phosphoglycerate 100.0 8.5E-74 1.9E-78 535.7 33.2 306 6-313 2-312 (324)
3 COG1052 LdhA Lactate dehydroge 100.0 9E-73 1.9E-77 528.4 33.8 310 6-317 1-322 (324)
4 PRK08410 2-hydroxyacid dehydro 100.0 2.4E-71 5.2E-76 519.0 35.0 300 8-311 1-311 (311)
5 PRK13243 glyoxylate reductase; 100.0 2.7E-71 5.9E-76 523.2 35.5 312 6-317 1-322 (333)
6 PRK11790 D-3-phosphoglycerate 100.0 2.7E-70 5.8E-75 528.6 36.3 312 4-317 7-326 (409)
7 PRK06487 glycerate dehydrogena 100.0 3.4E-70 7.3E-75 512.5 35.1 303 9-316 2-316 (317)
8 PLN02306 hydroxypyruvate reduc 100.0 1.4E-69 2.9E-74 518.3 36.2 315 3-317 11-354 (386)
9 PRK06932 glycerate dehydrogena 100.0 4.9E-69 1.1E-73 503.8 32.3 270 40-311 35-314 (314)
10 PLN02928 oxidoreductase family 100.0 5.3E-68 1.2E-72 502.9 35.2 304 5-315 16-343 (347)
11 PLN03139 formate dehydrogenase 100.0 7.9E-68 1.7E-72 504.9 35.7 294 20-313 67-370 (386)
12 PRK07574 formate dehydrogenase 100.0 6.7E-68 1.4E-72 505.7 33.5 295 21-315 61-365 (385)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.7E-67 3.7E-72 524.2 35.0 306 9-317 1-311 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 3.5E-67 7.6E-72 522.0 35.0 306 8-317 1-312 (526)
15 KOG0068 D-3-phosphoglycerate d 100.0 2.6E-67 5.6E-72 477.1 27.1 298 9-309 8-313 (406)
16 PRK12480 D-lactate dehydrogena 100.0 1.2E-65 2.7E-70 483.6 31.1 308 8-317 2-330 (330)
17 PRK08605 D-lactate dehydrogena 100.0 5.3E-65 1.2E-69 480.4 32.0 311 6-317 2-332 (332)
18 PRK15469 ghrA bifunctional gly 100.0 1.6E-61 3.4E-66 452.3 31.3 293 8-317 1-307 (312)
19 PRK15438 erythronate-4-phospha 100.0 3E-61 6.5E-66 458.1 32.4 275 8-308 1-279 (378)
20 PRK06436 glycerate dehydrogena 100.0 6.1E-61 1.3E-65 446.1 32.6 283 8-316 1-288 (303)
21 PRK00257 erythronate-4-phospha 100.0 1.6E-60 3.6E-65 454.3 32.7 278 8-311 1-282 (381)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 1.2E-60 2.7E-65 442.4 27.1 268 50-317 62-335 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 2.2E-48 4.7E-53 336.8 14.1 173 113-285 1-178 (178)
24 KOG0067 Transcription factor C 100.0 4.5E-33 9.8E-38 256.2 13.1 259 47-312 71-341 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.9 3.2E-23 6.9E-28 170.9 15.2 101 10-112 1-101 (133)
26 PTZ00075 Adenosylhomocysteinas 99.9 2.2E-21 4.8E-26 188.3 15.0 167 77-270 197-369 (476)
27 TIGR02853 spore_dpaA dipicolin 99.8 1.9E-20 4E-25 173.6 10.4 176 46-255 51-257 (287)
28 PRK08306 dipicolinate synthase 99.6 5.7E-15 1.2E-19 137.6 16.3 200 8-236 3-242 (296)
29 PLN02494 adenosylhomocysteinas 99.6 9.5E-16 2.1E-20 148.8 8.2 116 145-266 251-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.5 4.5E-14 9.8E-19 136.0 10.0 115 145-264 192-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 6.3E-14 1.4E-18 130.2 8.5 88 144-233 12-104 (335)
32 COG2084 MmsB 3-hydroxyisobutyr 99.5 2.3E-13 5.1E-18 125.1 9.6 111 149-261 1-119 (286)
33 PF03446 NAD_binding_2: NAD bi 99.4 1.5E-13 3.3E-18 117.1 6.5 111 149-261 2-118 (163)
34 PRK05476 S-adenosyl-L-homocyst 99.4 1.9E-12 4.1E-17 125.5 9.6 152 76-247 154-312 (425)
35 PF00670 AdoHcyase_NAD: S-aden 99.3 9.5E-12 2E-16 105.0 7.3 99 144-247 19-123 (162)
36 TIGR01505 tartro_sem_red 2-hyd 99.3 1.7E-11 3.8E-16 113.9 9.6 109 150-260 1-116 (291)
37 PRK12490 6-phosphogluconate de 99.3 2.8E-11 6.1E-16 113.1 10.5 109 149-260 1-117 (299)
38 PRK11559 garR tartronate semia 99.3 2E-11 4.4E-16 113.6 9.4 107 149-255 3-116 (296)
39 PRK15461 NADH-dependent gamma- 99.2 2.9E-11 6.2E-16 112.8 9.9 111 149-261 2-119 (296)
40 PRK09599 6-phosphogluconate de 99.2 1E-10 2.2E-15 109.4 10.4 110 149-261 1-118 (301)
41 PLN02350 phosphogluconate dehy 99.1 1.3E-10 2.9E-15 114.9 9.5 116 150-266 8-138 (493)
42 PRK15059 tartronate semialdehy 99.1 3.1E-10 6.7E-15 105.7 9.5 111 149-261 1-117 (292)
43 PRK05479 ketol-acid reductoiso 99.1 2.9E-10 6.3E-15 107.0 8.5 91 144-237 13-109 (330)
44 cd00401 AdoHcyase S-adenosyl-L 99.0 7.5E-10 1.6E-14 107.2 9.7 99 144-247 198-302 (413)
45 KOG0409 Predicted dehydrogenas 99.0 5.7E-10 1.2E-14 101.8 8.3 114 146-261 33-154 (327)
46 PTZ00142 6-phosphogluconate de 99.0 1.1E-09 2.5E-14 108.0 10.3 110 149-261 2-125 (470)
47 PLN02858 fructose-bisphosphate 99.0 9.9E-10 2.2E-14 120.4 10.4 113 147-261 3-124 (1378)
48 PLN02256 arogenate dehydrogena 99.0 3.7E-09 8.1E-14 98.9 12.9 135 146-284 34-174 (304)
49 PLN02712 arogenate dehydrogena 99.0 7.5E-10 1.6E-14 113.6 8.8 108 143-251 364-476 (667)
50 TIGR00872 gnd_rel 6-phosphoglu 99.0 2.2E-09 4.7E-14 100.3 10.6 109 149-261 1-117 (298)
51 PLN02858 fructose-bisphosphate 99.0 1.9E-09 4E-14 118.3 9.9 112 148-261 324-444 (1378)
52 TIGR01692 HIBADH 3-hydroxyisob 98.9 2.8E-09 6.1E-14 99.0 8.1 107 153-261 1-114 (288)
53 PLN02545 3-hydroxybutyryl-CoA 98.9 1.1E-08 2.4E-13 95.2 11.2 99 149-250 5-132 (295)
54 TIGR00873 gnd 6-phosphoglucona 98.9 6.2E-09 1.3E-13 102.8 9.4 109 150-261 1-122 (467)
55 PRK08655 prephenate dehydrogen 98.9 2.1E-08 4.5E-13 98.5 12.0 128 149-284 1-137 (437)
56 PRK14619 NAD(P)H-dependent gly 98.9 9.4E-09 2E-13 96.4 9.1 83 147-239 3-86 (308)
57 COG0499 SAM1 S-adenosylhomocys 98.8 7.4E-09 1.6E-13 96.6 6.7 106 145-255 206-318 (420)
58 PRK15182 Vi polysaccharide bio 98.8 1.9E-08 4.2E-13 98.3 9.7 131 149-280 7-173 (425)
59 TIGR00465 ilvC ketol-acid redu 98.8 1.5E-08 3.4E-13 95.1 8.6 92 146-240 1-98 (314)
60 PRK07417 arogenate dehydrogena 98.8 2.5E-08 5.4E-13 92.3 9.9 129 149-285 1-142 (279)
61 PRK05225 ketol-acid reductoiso 98.8 5.9E-09 1.3E-13 100.8 5.3 96 134-232 21-128 (487)
62 PRK09260 3-hydroxybutyryl-CoA 98.8 5.5E-08 1.2E-12 90.3 11.3 110 149-262 2-141 (288)
63 PRK14194 bifunctional 5,10-met 98.8 3.5E-08 7.6E-13 91.6 9.3 80 143-238 154-234 (301)
64 PRK06545 prephenate dehydrogen 98.7 1.3E-07 2.7E-12 90.7 13.0 136 149-293 1-156 (359)
65 PRK07502 cyclohexadienyl dehyd 98.7 9.8E-08 2.1E-12 89.4 11.6 140 148-293 6-161 (307)
66 PRK11064 wecC UDP-N-acetyl-D-m 98.7 1.4E-07 3E-12 92.2 12.4 104 149-252 4-136 (415)
67 PLN02712 arogenate dehydrogena 98.7 3.1E-08 6.7E-13 101.8 7.8 93 145-238 49-146 (667)
68 PLN02688 pyrroline-5-carboxyla 98.7 2.1E-07 4.6E-12 85.2 12.6 98 149-250 1-108 (266)
69 PF07991 IlvN: Acetohydroxy ac 98.7 2E-08 4.3E-13 84.6 5.1 89 146-237 2-96 (165)
70 TIGR00518 alaDH alanine dehydr 98.7 2.4E-08 5.1E-13 96.1 5.6 91 145-235 164-267 (370)
71 PRK08818 prephenate dehydrogen 98.7 7E-07 1.5E-11 85.6 15.4 121 146-283 2-130 (370)
72 PRK08293 3-hydroxybutyryl-CoA 98.7 2.8E-07 6E-12 85.6 12.3 136 149-295 4-169 (287)
73 PF03807 F420_oxidored: NADP o 98.7 2.9E-08 6.3E-13 76.6 4.8 85 150-237 1-96 (96)
74 PRK07066 3-hydroxybutyryl-CoA 98.7 4.8E-07 1E-11 85.3 13.8 100 149-250 8-132 (321)
75 PRK11199 tyrA bifunctional cho 98.7 6E-07 1.3E-11 86.5 14.7 81 147-238 97-178 (374)
76 TIGR03026 NDP-sugDHase nucleot 98.6 3.6E-07 7.7E-12 89.2 11.9 132 149-281 1-174 (411)
77 COG0287 TyrA Prephenate dehydr 98.6 4.2E-07 9.1E-12 84.0 11.7 130 148-285 3-146 (279)
78 PRK07530 3-hydroxybutyryl-CoA 98.6 3.6E-07 7.8E-12 85.0 11.3 98 149-250 5-132 (292)
79 TIGR00561 pntA NAD(P) transhyd 98.6 2.4E-06 5.3E-11 84.8 17.3 211 15-236 16-285 (511)
80 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 2E-07 4.3E-12 79.9 8.3 89 144-255 40-129 (168)
81 PRK08507 prephenate dehydrogen 98.6 5.1E-07 1.1E-11 83.3 11.7 127 149-284 1-142 (275)
82 PRK14189 bifunctional 5,10-met 98.6 2.3E-07 4.9E-12 85.6 8.6 81 143-239 153-234 (285)
83 PRK05808 3-hydroxybutyryl-CoA 98.6 7.9E-07 1.7E-11 82.3 12.3 99 149-250 4-131 (282)
84 PRK14188 bifunctional 5,10-met 98.6 2.4E-07 5.2E-12 86.1 8.7 79 144-239 154-234 (296)
85 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 5.3E-07 1.1E-11 79.5 10.3 105 143-255 23-134 (200)
86 PRK07531 bifunctional 3-hydrox 98.5 7.4E-07 1.6E-11 89.0 12.3 101 149-251 5-130 (495)
87 TIGR01724 hmd_rel H2-forming N 98.5 1.8E-06 4E-11 80.3 13.5 88 160-251 32-129 (341)
88 PRK14618 NAD(P)H-dependent gly 98.5 3.5E-07 7.6E-12 86.5 8.7 98 148-251 4-123 (328)
89 cd01065 NAD_bind_Shikimate_DH 98.5 5.1E-07 1.1E-11 75.6 8.7 106 145-255 16-134 (155)
90 PRK14179 bifunctional 5,10-met 98.5 4.4E-07 9.5E-12 83.7 8.8 80 143-238 153-233 (284)
91 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.3E-06 2.8E-11 82.0 12.2 135 149-294 3-166 (308)
92 PRK06130 3-hydroxybutyryl-CoA 98.5 1.6E-06 3.4E-11 81.4 12.1 99 149-250 5-128 (311)
93 PRK12491 pyrroline-5-carboxyla 98.5 3.8E-07 8.3E-12 84.1 7.8 98 149-250 3-110 (272)
94 PRK06035 3-hydroxyacyl-CoA deh 98.5 1.6E-06 3.5E-11 80.6 11.9 99 149-250 4-134 (291)
95 PRK13302 putative L-aspartate 98.5 3.9E-07 8.4E-12 84.1 7.4 104 147-255 5-118 (271)
96 COG1023 Gnd Predicted 6-phosph 98.5 9.6E-07 2.1E-11 78.5 9.4 113 149-264 1-121 (300)
97 PRK07679 pyrroline-5-carboxyla 98.5 6.6E-07 1.4E-11 82.7 8.7 100 147-250 2-112 (279)
98 KOG1370 S-adenosylhomocysteine 98.5 2.3E-07 5E-12 84.9 5.5 90 145-239 211-305 (434)
99 PRK07819 3-hydroxybutyryl-CoA 98.4 1.1E-06 2.5E-11 81.6 9.8 98 149-249 6-133 (286)
100 PRK15057 UDP-glucose 6-dehydro 98.4 1.4E-06 3.1E-11 84.2 10.8 123 149-280 1-160 (388)
101 PRK08268 3-hydroxy-acyl-CoA de 98.4 1.6E-06 3.5E-11 86.7 11.0 112 149-266 8-150 (507)
102 PRK14175 bifunctional 5,10-met 98.4 9.3E-07 2E-11 81.7 8.3 79 144-238 154-233 (286)
103 PRK00094 gpsA NAD(P)H-dependen 98.4 6.1E-07 1.3E-11 84.3 6.9 90 149-240 2-110 (325)
104 PF10727 Rossmann-like: Rossma 98.4 3.3E-07 7.2E-12 74.9 3.9 104 147-254 9-121 (127)
105 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 1.5E-06 3.2E-11 86.9 8.9 113 149-266 6-148 (503)
106 PRK14806 bifunctional cyclohex 98.3 4.1E-06 8.9E-11 87.5 12.3 131 149-286 4-153 (735)
107 PF01488 Shikimate_DH: Shikima 98.3 4.8E-07 1E-11 74.7 3.7 94 145-241 9-115 (135)
108 PRK05472 redox-sensing transcr 98.3 5E-07 1.1E-11 80.3 4.0 127 106-251 61-201 (213)
109 cd05191 NAD_bind_amino_acid_DH 98.3 4E-06 8.6E-11 63.7 8.1 67 144-235 19-86 (86)
110 PRK06476 pyrroline-5-carboxyla 98.3 1.7E-06 3.7E-11 79.0 7.2 98 149-252 1-108 (258)
111 PRK07680 late competence prote 98.3 1.8E-06 3.9E-11 79.5 6.9 98 149-250 1-109 (273)
112 PRK09287 6-phosphogluconate de 98.3 2.3E-06 4.9E-11 84.5 7.9 100 159-261 1-113 (459)
113 COG2085 Predicted dinucleotide 98.2 3.9E-06 8.4E-11 73.7 8.1 86 149-237 2-95 (211)
114 PRK09424 pntA NAD(P) transhydr 98.2 3.4E-05 7.5E-10 76.9 15.5 210 16-236 18-286 (509)
115 PF02882 THF_DHG_CYH_C: Tetrah 98.2 5.6E-06 1.2E-10 70.2 8.1 81 143-239 31-112 (160)
116 PRK06928 pyrroline-5-carboxyla 98.2 9E-06 1.9E-10 75.2 9.8 102 149-254 2-115 (277)
117 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 2.5E-06 5.3E-11 72.2 5.4 87 150-238 1-106 (157)
118 PF01262 AlaDh_PNT_C: Alanine 98.2 1.2E-06 2.7E-11 74.9 3.5 92 144-235 16-139 (168)
119 PRK10792 bifunctional 5,10-met 98.1 1.3E-05 2.8E-10 74.0 9.7 79 144-238 155-234 (285)
120 PRK14191 bifunctional 5,10-met 98.1 9E-06 2E-10 75.1 8.1 80 143-238 152-232 (285)
121 cd05311 NAD_bind_2_malic_enz N 98.1 1.3E-05 2.8E-10 72.0 8.9 148 144-307 21-195 (226)
122 COG0686 Ald Alanine dehydrogen 98.1 3.6E-06 7.8E-11 77.6 4.9 90 145-235 165-268 (371)
123 PRK14178 bifunctional 5,10-met 98.1 9.2E-06 2E-10 74.8 7.5 80 143-238 147-227 (279)
124 PRK14176 bifunctional 5,10-met 98.1 1.3E-05 2.9E-10 73.9 8.6 79 143-237 159-238 (287)
125 cd01079 NAD_bind_m-THF_DH NAD 98.1 2.9E-05 6.2E-10 67.7 10.0 89 141-236 55-157 (197)
126 PRK14192 bifunctional 5,10-met 98.1 1.7E-05 3.6E-10 73.6 9.0 80 143-238 154-234 (283)
127 cd05212 NAD_bind_m-THF_DH_Cycl 98.1 3.7E-05 8.1E-10 63.9 10.2 80 143-238 23-103 (140)
128 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 1E-05 2.2E-10 70.5 6.7 132 149-280 1-171 (185)
129 TIGR01035 hemA glutamyl-tRNA r 98.0 7.3E-06 1.6E-10 80.2 5.9 94 145-241 177-283 (417)
130 PRK13304 L-aspartate dehydroge 98.0 1.9E-05 4E-10 72.7 8.1 102 149-255 2-115 (265)
131 COG0345 ProC Pyrroline-5-carbo 98.0 4.7E-05 1E-09 69.7 9.8 99 149-255 2-113 (266)
132 COG0059 IlvC Ketol-acid reduct 98.0 1.7E-05 3.8E-10 72.9 6.8 85 145-231 15-105 (338)
133 COG0362 Gnd 6-phosphogluconate 98.0 0.00025 5.4E-09 67.6 14.5 153 149-312 4-169 (473)
134 PRK14170 bifunctional 5,10-met 98.0 5.2E-05 1.1E-09 70.0 9.8 80 143-238 152-232 (284)
135 PRK12557 H(2)-dependent methyl 98.0 3.5E-05 7.6E-10 73.4 9.0 90 160-250 32-132 (342)
136 PRK11880 pyrroline-5-carboxyla 98.0 1.8E-05 4E-10 72.4 6.8 96 149-250 3-107 (267)
137 PTZ00431 pyrroline carboxylate 98.0 3.7E-05 8.1E-10 70.4 8.8 97 148-250 3-103 (260)
138 PRK14183 bifunctional 5,10-met 97.9 3.7E-05 8E-10 70.8 8.5 80 143-238 152-232 (281)
139 TIGR01915 npdG NADPH-dependent 97.9 1.7E-05 3.6E-10 70.8 5.8 89 149-240 1-106 (219)
140 cd05213 NAD_bind_Glutamyl_tRNA 97.9 2.1E-05 4.6E-10 73.9 6.6 91 146-238 176-276 (311)
141 PRK14190 bifunctional 5,10-met 97.9 6.7E-05 1.5E-09 69.3 9.4 113 143-291 153-266 (284)
142 PF02737 3HCDH_N: 3-hydroxyacy 97.9 1.9E-05 4.1E-10 68.4 5.4 97 150-249 1-126 (180)
143 PRK14171 bifunctional 5,10-met 97.9 8.1E-05 1.8E-09 68.8 9.8 79 144-238 155-234 (288)
144 PRK14186 bifunctional 5,10-met 97.9 9.1E-05 2E-09 68.9 10.1 118 143-292 153-271 (297)
145 PRK00045 hemA glutamyl-tRNA re 97.9 2.2E-05 4.7E-10 77.0 6.1 91 145-238 179-283 (423)
146 PRK14169 bifunctional 5,10-met 97.9 6.6E-05 1.4E-09 69.3 8.7 113 143-291 151-264 (282)
147 PLN00203 glutamyl-tRNA reducta 97.9 2.2E-05 4.7E-10 78.6 5.9 91 145-238 263-372 (519)
148 PRK07634 pyrroline-5-carboxyla 97.8 8.9E-05 1.9E-09 66.9 9.2 101 147-252 3-114 (245)
149 PRK14172 bifunctional 5,10-met 97.8 0.00013 2.9E-09 67.1 9.9 79 144-238 154-233 (278)
150 PRK14166 bifunctional 5,10-met 97.8 8.8E-05 1.9E-09 68.5 8.7 80 143-238 152-232 (282)
151 PRK14177 bifunctional 5,10-met 97.8 9.9E-05 2.2E-09 68.1 8.9 80 143-238 154-234 (284)
152 PRK06141 ornithine cyclodeamin 97.8 9.8E-05 2.1E-09 69.6 8.9 84 147-236 124-220 (314)
153 PRK08229 2-dehydropantoate 2-r 97.8 8.9E-05 1.9E-09 70.3 8.7 103 149-255 3-126 (341)
154 PLN02516 methylenetetrahydrofo 97.8 0.0001 2.2E-09 68.6 8.7 134 143-307 162-297 (299)
155 PLN02897 tetrahydrofolate dehy 97.8 8.1E-05 1.8E-09 70.2 8.1 80 143-238 209-289 (345)
156 PRK14180 bifunctional 5,10-met 97.8 0.00011 2.4E-09 67.8 8.6 79 143-237 153-232 (282)
157 PRK14173 bifunctional 5,10-met 97.8 0.00011 2.5E-09 67.9 8.7 134 143-309 150-284 (287)
158 PLN02353 probable UDP-glucose 97.8 0.00037 7.9E-09 69.2 12.9 132 149-281 2-177 (473)
159 PRK14181 bifunctional 5,10-met 97.8 0.00012 2.6E-09 67.7 8.7 81 143-239 148-233 (287)
160 PRK14187 bifunctional 5,10-met 97.8 0.00012 2.7E-09 67.8 8.7 80 143-238 155-235 (294)
161 COG0677 WecC UDP-N-acetyl-D-ma 97.7 0.00044 9.5E-09 66.1 12.2 139 149-294 10-190 (436)
162 PRK00676 hemA glutamyl-tRNA re 97.7 0.00014 3E-09 68.9 8.5 95 145-241 171-267 (338)
163 PRK00258 aroE shikimate 5-dehy 97.7 7.3E-05 1.6E-09 69.2 6.2 108 145-254 120-238 (278)
164 PRK14182 bifunctional 5,10-met 97.7 0.00019 4.2E-09 66.2 8.8 79 144-238 153-232 (282)
165 PRK06522 2-dehydropantoate 2-r 97.7 0.00031 6.7E-09 65.2 10.4 103 149-255 1-119 (304)
166 COG0190 FolD 5,10-methylene-te 97.7 0.00013 2.7E-09 66.9 7.5 113 143-291 151-264 (283)
167 KOG2380 Prephenate dehydrogena 97.7 0.00037 8.1E-09 65.2 10.5 135 148-285 52-192 (480)
168 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00015 3.2E-09 63.3 7.6 94 144-241 24-135 (194)
169 PLN02616 tetrahydrofolate dehy 97.7 0.00017 3.6E-09 68.5 8.4 80 143-238 226-306 (364)
170 PRK12921 2-dehydropantoate 2-r 97.7 0.00016 3.4E-09 67.3 8.2 104 149-255 1-121 (305)
171 PRK14193 bifunctional 5,10-met 97.7 0.00021 4.5E-09 66.1 8.6 112 143-291 153-267 (284)
172 PRK14174 bifunctional 5,10-met 97.6 0.00023 5.1E-09 66.2 8.2 79 144-238 155-238 (295)
173 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.002 4.3E-08 57.9 13.9 104 144-255 27-154 (227)
174 PRK14184 bifunctional 5,10-met 97.6 0.00024 5.3E-09 65.7 8.1 79 143-237 152-235 (286)
175 TIGR02371 ala_DH_arch alanine 97.6 0.00024 5.3E-09 67.2 8.1 84 148-237 128-224 (325)
176 TIGR00507 aroE shikimate 5-deh 97.6 0.00042 9.1E-09 63.8 9.4 105 146-255 115-232 (270)
177 PRK14185 bifunctional 5,10-met 97.6 0.00033 7.1E-09 65.0 8.7 80 143-238 152-236 (293)
178 PF13241 NAD_binding_7: Putati 97.6 7.4E-05 1.6E-09 58.7 3.7 87 145-236 4-92 (103)
179 PRK14167 bifunctional 5,10-met 97.6 0.00036 7.8E-09 64.9 8.7 80 143-238 152-236 (297)
180 PRK14168 bifunctional 5,10-met 97.5 0.00035 7.5E-09 65.0 8.5 133 143-305 156-293 (297)
181 TIGR03376 glycerol3P_DH glycer 97.5 0.00035 7.7E-09 66.5 8.5 90 150-241 1-122 (342)
182 COG1250 FadB 3-hydroxyacyl-CoA 97.5 0.00094 2E-08 62.5 10.6 111 148-263 3-143 (307)
183 TIGR02354 thiF_fam2 thiamine b 97.5 0.00049 1.1E-08 60.7 8.3 90 144-234 17-144 (200)
184 PRK13940 glutamyl-tRNA reducta 97.5 0.00031 6.8E-09 68.6 7.5 87 145-236 178-274 (414)
185 COG0240 GpsA Glycerol-3-phosph 97.5 0.00035 7.6E-09 65.6 7.4 96 149-246 2-116 (329)
186 TIGR01546 GAPDH-II_archae glyc 97.5 0.00037 7.9E-09 66.0 7.6 82 151-235 1-108 (333)
187 COG0373 HemA Glutamyl-tRNA red 97.5 0.00025 5.5E-09 68.7 6.6 94 145-241 175-280 (414)
188 PRK07340 ornithine cyclodeamin 97.4 0.00036 7.8E-09 65.5 7.3 85 147-238 124-220 (304)
189 PTZ00345 glycerol-3-phosphate 97.4 0.00052 1.1E-08 65.9 8.4 92 148-241 11-135 (365)
190 COG1712 Predicted dinucleotide 97.4 0.00045 9.7E-09 61.2 6.5 92 149-245 1-101 (255)
191 PRK06249 2-dehydropantoate 2-r 97.4 0.0028 6.1E-08 59.5 12.5 106 149-258 6-128 (313)
192 PRK14982 acyl-ACP reductase; P 97.4 0.00056 1.2E-08 65.0 7.7 95 142-242 149-253 (340)
193 cd05313 NAD_bind_2_Glu_DH NAD( 97.4 0.004 8.6E-08 56.8 12.8 105 144-255 34-172 (254)
194 PRK12439 NAD(P)H-dependent gly 97.3 0.00077 1.7E-08 64.2 8.3 88 149-239 8-115 (341)
195 KOG2653 6-phosphogluconate deh 97.3 0.0042 9.1E-08 58.6 12.7 152 149-311 7-172 (487)
196 PF13380 CoA_binding_2: CoA bi 97.3 0.0012 2.7E-08 52.9 8.0 100 149-255 1-104 (116)
197 TIGR02992 ectoine_eutC ectoine 97.3 0.00093 2E-08 63.3 8.5 84 147-236 128-225 (326)
198 COG1064 AdhP Zn-dependent alco 97.3 0.00061 1.3E-08 64.4 7.0 85 147-237 166-261 (339)
199 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0095 2.1E-07 53.2 14.3 104 144-255 19-145 (217)
200 PLN02477 glutamate dehydrogena 97.3 0.0073 1.6E-07 58.9 14.3 105 143-255 201-329 (410)
201 PRK08618 ornithine cyclodeamin 97.3 0.00086 1.9E-08 63.5 7.7 84 147-237 126-223 (325)
202 PRK14620 NAD(P)H-dependent gly 97.2 0.00094 2E-08 63.0 7.6 88 149-238 1-109 (326)
203 TIGR02441 fa_ox_alpha_mit fatt 97.2 0.0016 3.4E-08 68.2 9.8 110 149-263 336-475 (737)
204 PRK13301 putative L-aspartate 97.2 0.0017 3.8E-08 59.3 8.8 98 149-251 3-112 (267)
205 PRK11730 fadB multifunctional 97.2 0.0024 5.3E-08 66.7 10.9 110 149-262 314-452 (715)
206 PRK06046 alanine dehydrogenase 97.2 0.00084 1.8E-08 63.6 6.6 82 148-236 129-224 (326)
207 PRK12549 shikimate 5-dehydroge 97.2 0.00099 2.1E-08 61.9 6.9 91 145-238 124-230 (284)
208 COG0026 PurK Phosphoribosylami 97.2 0.00075 1.6E-08 64.0 5.9 58 148-205 1-68 (375)
209 TIGR02437 FadB fatty oxidation 97.1 0.003 6.6E-08 65.9 10.5 99 149-250 314-441 (714)
210 PF02153 PDH: Prephenate dehyd 97.1 0.0033 7.2E-08 57.5 9.5 119 163-285 1-133 (258)
211 PRK08291 ectoine utilization p 97.1 0.00098 2.1E-08 63.2 6.2 83 147-235 131-227 (330)
212 PF02423 OCD_Mu_crystall: Orni 97.1 0.001 2.2E-08 62.6 6.2 87 149-239 129-228 (313)
213 PRK06718 precorrin-2 dehydroge 97.1 0.0014 2.9E-08 57.9 6.5 41 141-181 3-43 (202)
214 PRK09310 aroDE bifunctional 3- 97.1 0.0015 3.2E-08 65.1 7.4 68 144-211 328-402 (477)
215 TIGR01921 DAP-DH diaminopimela 97.0 0.0019 4.2E-08 60.8 7.5 102 149-255 4-115 (324)
216 smart00859 Semialdhyde_dh Semi 97.0 0.0016 3.4E-08 52.4 5.9 85 150-236 1-100 (122)
217 PRK06823 ornithine cyclodeamin 97.0 0.0026 5.7E-08 59.9 8.2 83 148-236 128-223 (315)
218 PRK13303 L-aspartate dehydroge 97.0 0.0027 5.9E-08 58.3 8.1 102 149-255 2-115 (265)
219 PRK08306 dipicolinate synthase 97.0 0.0067 1.5E-07 56.7 10.6 109 147-262 1-121 (296)
220 TIGR02440 FadJ fatty oxidation 97.0 0.005 1.1E-07 64.2 10.6 110 149-262 305-444 (699)
221 PTZ00117 malate dehydrogenase; 97.0 0.0039 8.5E-08 58.9 8.9 112 146-258 3-147 (319)
222 PRK11154 fadJ multifunctional 97.0 0.0086 1.9E-07 62.6 12.3 110 149-262 310-449 (708)
223 TIGR01763 MalateDH_bact malate 97.0 0.0026 5.7E-08 59.7 7.7 111 149-260 2-147 (305)
224 PRK06444 prephenate dehydrogen 96.9 0.0015 3.3E-08 57.4 5.6 61 149-238 1-62 (197)
225 COG2423 Predicted ornithine cy 96.9 0.0027 5.8E-08 60.1 7.5 82 149-236 131-226 (330)
226 PF01113 DapB_N: Dihydrodipico 96.9 0.0058 1.3E-07 49.5 8.5 95 149-249 1-112 (124)
227 PRK06199 ornithine cyclodeamin 96.9 0.0017 3.6E-08 62.8 6.2 88 148-238 155-262 (379)
228 KOG0023 Alcohol dehydrogenase, 96.9 0.0016 3.5E-08 60.7 5.4 36 147-182 181-216 (360)
229 cd00650 LDH_MDH_like NAD-depen 96.9 0.0023 5.1E-08 58.6 6.4 110 151-262 1-149 (263)
230 PRK09414 glutamate dehydrogena 96.9 0.0059 1.3E-07 60.0 9.5 106 143-255 227-362 (445)
231 COG1748 LYS9 Saccharopine dehy 96.9 0.0025 5.3E-08 61.5 6.6 84 149-238 2-102 (389)
232 COG1004 Ugd Predicted UDP-gluc 96.8 0.011 2.5E-07 56.7 10.6 131 149-280 1-169 (414)
233 PRK07589 ornithine cyclodeamin 96.8 0.0038 8.3E-08 59.6 7.4 85 148-236 129-226 (346)
234 PRK06407 ornithine cyclodeamin 96.8 0.0059 1.3E-07 57.2 8.4 84 148-237 117-214 (301)
235 PF00185 OTCace: Aspartate/orn 96.8 0.0084 1.8E-07 50.8 8.5 89 147-235 1-120 (158)
236 PRK14031 glutamate dehydrogena 96.8 0.026 5.7E-07 55.5 13.0 106 143-255 223-361 (444)
237 PF01118 Semialdhyde_dh: Semia 96.7 0.0022 4.8E-08 51.6 4.7 82 150-236 1-98 (121)
238 PRK06719 precorrin-2 dehydroge 96.7 0.0033 7.1E-08 53.2 5.9 41 140-180 5-45 (157)
239 TIGR01470 cysG_Nterm siroheme 96.7 0.042 9.1E-07 48.6 13.0 42 141-182 2-43 (205)
240 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.0023 5E-08 50.9 4.4 101 150-255 2-115 (120)
241 TIGR02356 adenyl_thiF thiazole 96.7 0.0036 7.8E-08 55.2 6.0 37 144-180 17-54 (202)
242 cd00762 NAD_bind_malic_enz NAD 96.6 0.034 7.4E-07 50.6 12.0 175 108-307 4-222 (254)
243 TIGR02964 xanthine_xdhC xanthi 96.6 0.013 2.9E-07 53.3 8.9 88 149-254 101-188 (246)
244 cd05312 NAD_bind_1_malic_enz N 96.5 0.075 1.6E-06 49.1 13.6 178 108-308 4-222 (279)
245 PTZ00082 L-lactate dehydrogena 96.5 0.0081 1.7E-07 56.8 7.4 112 146-258 4-153 (321)
246 PRK00683 murD UDP-N-acetylmura 96.5 0.0078 1.7E-07 58.8 7.6 105 148-252 3-127 (418)
247 PRK00048 dihydrodipicolinate r 96.5 0.017 3.6E-07 52.9 9.3 60 149-208 2-69 (257)
248 PF00208 ELFV_dehydrog: Glutam 96.5 0.0081 1.8E-07 54.6 7.1 104 145-255 29-165 (244)
249 COG5322 Predicted dehydrogenas 96.5 0.011 2.3E-07 54.0 7.7 96 142-242 161-268 (351)
250 PRK14030 glutamate dehydrogena 96.5 0.059 1.3E-06 53.0 13.3 155 143-307 223-411 (445)
251 TIGR01809 Shik-DH-AROM shikima 96.5 0.0025 5.3E-08 59.2 3.5 65 146-210 123-201 (282)
252 PTZ00079 NADP-specific glutama 96.5 0.026 5.6E-07 55.5 10.7 106 143-255 232-371 (454)
253 PRK12548 shikimate 5-dehydroge 96.4 0.017 3.8E-07 53.7 9.0 37 145-181 123-160 (289)
254 cd05291 HicDH_like L-2-hydroxy 96.4 0.012 2.7E-07 55.1 8.0 92 149-242 1-122 (306)
255 COG0334 GdhA Glutamate dehydro 96.4 0.012 2.6E-07 56.8 7.9 102 143-252 202-328 (411)
256 PRK12475 thiamine/molybdopteri 96.4 0.0075 1.6E-07 57.4 6.6 37 144-180 20-57 (338)
257 COG0281 SfcA Malic enzyme [Ene 96.4 0.032 6.9E-07 54.0 10.5 179 92-307 165-369 (432)
258 PRK00066 ldh L-lactate dehydro 96.4 0.014 3E-07 55.1 8.1 89 147-235 5-122 (315)
259 KOG2304 3-hydroxyacyl-CoA dehy 96.3 0.0012 2.6E-08 58.7 0.5 117 146-266 9-160 (298)
260 PRK00779 ornithine carbamoyltr 96.3 0.061 1.3E-06 50.5 12.0 90 146-235 150-265 (304)
261 COG1648 CysG Siroheme synthase 96.3 0.0071 1.5E-07 53.7 5.4 89 140-234 4-102 (210)
262 cd00757 ThiF_MoeB_HesA_family 96.3 0.0084 1.8E-07 53.8 5.8 88 144-235 17-143 (228)
263 PRK00856 pyrB aspartate carbam 96.3 0.03 6.5E-07 52.6 9.7 89 146-234 154-261 (305)
264 PRK06019 phosphoribosylaminoim 96.2 0.0091 2E-07 57.5 6.1 58 148-205 2-69 (372)
265 PRK01710 murD UDP-N-acetylmura 96.2 0.0096 2.1E-07 58.9 6.3 108 145-253 11-143 (458)
266 PRK07232 bifunctional malic en 96.2 0.13 2.7E-06 54.0 14.6 157 93-286 152-326 (752)
267 PRK06223 malate dehydrogenase; 96.2 0.023 5E-07 53.1 8.4 58 149-207 3-78 (307)
268 PF13478 XdhC_C: XdhC Rossmann 96.2 0.0096 2.1E-07 49.2 5.1 85 151-258 1-85 (136)
269 TIGR02853 spore_dpaA dipicolin 96.1 0.061 1.3E-06 50.0 10.9 109 148-263 1-121 (287)
270 TIGR01850 argC N-acetyl-gamma- 96.1 0.02 4.3E-07 54.7 7.9 82 149-236 1-100 (346)
271 PRK01713 ornithine carbamoyltr 96.1 0.099 2.1E-06 49.7 12.4 91 145-235 153-275 (334)
272 PRK12862 malic enzyme; Reviewe 96.1 0.068 1.5E-06 56.1 12.2 156 94-286 161-334 (763)
273 PRK12749 quinate/shikimate deh 96.1 0.041 8.9E-07 51.2 9.5 37 145-181 121-158 (288)
274 PRK05690 molybdopterin biosynt 96.1 0.013 2.8E-07 53.2 5.9 36 144-179 28-64 (245)
275 PRK08269 3-hydroxybutyryl-CoA 96.0 0.076 1.6E-06 50.1 11.3 90 159-250 1-128 (314)
276 cd05297 GH4_alpha_glucosidase_ 96.0 0.015 3.2E-07 57.1 6.6 61 149-209 1-84 (423)
277 PRK02255 putrescine carbamoylt 96.0 0.12 2.7E-06 49.2 12.6 91 145-235 151-272 (338)
278 PRK12861 malic enzyme; Reviewe 96.0 0.073 1.6E-06 55.7 11.9 155 94-286 157-330 (764)
279 TIGR02717 AcCoA-syn-alpha acet 96.0 0.073 1.6E-06 52.7 11.4 110 145-257 4-125 (447)
280 TIGR03026 NDP-sugDHase nucleot 96.0 0.037 8.1E-07 54.0 9.3 86 146-234 311-409 (411)
281 TIGR00658 orni_carb_tr ornithi 96.0 0.1 2.2E-06 49.0 11.6 90 146-235 146-264 (304)
282 TIGR02355 moeB molybdopterin s 96.0 0.018 4E-07 52.1 6.4 37 144-180 20-57 (240)
283 COG0569 TrkA K+ transport syst 96.0 0.0091 2E-07 53.6 4.4 64 149-212 1-79 (225)
284 PRK04207 glyceraldehyde-3-phos 95.9 0.034 7.3E-07 53.1 8.3 62 149-210 2-89 (341)
285 COG3288 PntA NAD/NADP transhyd 95.9 0.013 2.9E-07 54.3 5.3 92 143-235 159-281 (356)
286 PRK05708 2-dehydropantoate 2-r 95.9 0.041 8.8E-07 51.6 8.7 107 149-258 3-126 (305)
287 PF02558 ApbA: Ketopantoate re 95.9 0.0074 1.6E-07 50.1 3.3 105 151-258 1-123 (151)
288 TIGR00670 asp_carb_tr aspartat 95.9 0.062 1.3E-06 50.4 9.7 89 146-235 148-263 (301)
289 PLN02527 aspartate carbamoyltr 95.9 0.065 1.4E-06 50.3 9.8 90 146-235 149-266 (306)
290 cd05293 LDH_1 A subgroup of L- 95.8 0.03 6.6E-07 52.7 7.5 106 149-257 4-144 (312)
291 PF03720 UDPG_MGDP_dh_C: UDP-g 95.8 0.015 3.3E-07 45.7 4.5 75 159-234 18-100 (106)
292 PRK02102 ornithine carbamoyltr 95.8 0.1 2.2E-06 49.6 10.7 90 146-235 153-273 (331)
293 PRK10637 cysG siroheme synthas 95.7 0.02 4.2E-07 56.9 6.2 91 140-235 4-103 (457)
294 cd01339 LDH-like_MDH L-lactate 95.7 0.025 5.3E-07 52.9 6.5 57 151-208 1-75 (300)
295 PLN02968 Probable N-acetyl-gam 95.7 0.021 4.5E-07 55.3 6.1 92 146-243 36-142 (381)
296 COG0771 MurD UDP-N-acetylmuram 95.7 0.023 4.9E-07 56.0 6.2 121 146-266 5-157 (448)
297 PRK08644 thiamine biosynthesis 95.7 0.044 9.6E-07 48.7 7.6 37 144-180 24-61 (212)
298 PRK00436 argC N-acetyl-gamma-g 95.7 0.027 5.8E-07 53.8 6.5 86 149-240 3-104 (343)
299 PRK11891 aspartate carbamoyltr 95.6 0.18 3.9E-06 49.5 12.2 91 145-235 238-355 (429)
300 PRK04284 ornithine carbamoyltr 95.6 0.11 2.3E-06 49.4 10.4 90 146-235 153-274 (332)
301 cd05292 LDH_2 A subgroup of L- 95.6 0.02 4.2E-07 53.9 5.3 61 149-210 1-78 (308)
302 PRK14106 murD UDP-N-acetylmura 95.5 0.03 6.5E-07 55.1 6.6 107 145-251 2-132 (450)
303 PRK08223 hypothetical protein; 95.5 0.049 1.1E-06 50.6 7.5 36 144-179 23-59 (287)
304 PRK09496 trkA potassium transp 95.5 0.032 6.9E-07 54.8 6.7 64 149-212 1-78 (453)
305 TIGR00036 dapB dihydrodipicoli 95.5 0.084 1.8E-06 48.6 9.0 101 149-254 2-119 (266)
306 PLN02342 ornithine carbamoyltr 95.5 0.24 5.1E-06 47.4 12.2 91 145-235 191-307 (348)
307 PRK03515 ornithine carbamoyltr 95.5 0.15 3.3E-06 48.5 10.8 91 145-235 153-275 (336)
308 COG1004 Ugd Predicted UDP-gluc 95.4 0.052 1.1E-06 52.3 7.5 84 146-233 308-406 (414)
309 PRK06270 homoserine dehydrogen 95.4 0.07 1.5E-06 50.9 8.4 107 149-255 3-146 (341)
310 PF02254 TrkA_N: TrkA-N domain 95.3 0.021 4.5E-07 45.1 3.9 81 151-233 1-94 (116)
311 PRK01390 murD UDP-N-acetylmura 95.3 0.037 8.1E-07 54.7 6.5 108 145-252 6-139 (460)
312 PRK03369 murD UDP-N-acetylmura 95.3 0.036 7.7E-07 55.4 6.2 107 145-251 9-141 (488)
313 PRK02006 murD UDP-N-acetylmura 95.3 0.043 9.2E-07 54.9 6.8 110 146-255 5-149 (498)
314 TIGR03316 ygeW probable carbam 95.2 0.4 8.6E-06 46.0 12.9 62 145-206 167-252 (357)
315 cd01486 Apg7 Apg7 is an E1-lik 95.2 0.067 1.4E-06 50.0 7.4 30 150-179 1-31 (307)
316 PRK05562 precorrin-2 dehydroge 95.2 0.73 1.6E-05 41.3 13.8 42 140-181 17-58 (223)
317 PLN02353 probable UDP-glucose 95.2 0.091 2E-06 52.3 8.8 97 145-245 321-455 (473)
318 COG0169 AroE Shikimate 5-dehyd 95.2 0.09 2E-06 48.8 8.2 105 144-252 122-242 (283)
319 PF00056 Ldh_1_N: lactate/mala 95.2 0.014 3E-07 48.5 2.5 91 149-241 1-122 (141)
320 PLN02819 lysine-ketoglutarate 95.2 0.038 8.2E-07 59.7 6.4 89 145-235 200-338 (1042)
321 PLN02520 bifunctional 3-dehydr 95.2 0.048 1E-06 55.1 6.8 38 145-182 376-413 (529)
322 PLN02948 phosphoribosylaminoim 95.1 0.048 1E-06 55.7 6.5 65 144-208 18-92 (577)
323 PRK04690 murD UDP-N-acetylmura 95.1 0.049 1.1E-06 54.1 6.5 107 146-252 6-140 (468)
324 cd01487 E1_ThiF_like E1_ThiF_l 95.0 0.097 2.1E-06 45.0 7.4 31 150-180 1-32 (174)
325 TIGR01161 purK phosphoribosyla 95.0 0.042 9E-07 52.4 5.6 56 150-205 1-66 (352)
326 cd05188 MDR Medium chain reduc 95.0 0.24 5.1E-06 44.1 10.2 88 146-238 133-235 (271)
327 PLN02602 lactate dehydrogenase 95.0 0.11 2.3E-06 49.8 8.2 86 149-235 38-154 (350)
328 PRK11579 putative oxidoreducta 95.0 0.042 9.1E-07 52.3 5.4 63 149-211 5-76 (346)
329 PF13460 NAD_binding_10: NADH( 94.9 0.026 5.7E-07 47.9 3.5 62 151-212 1-73 (183)
330 COG1893 ApbA Ketopantoate redu 94.9 0.4 8.6E-06 45.1 11.6 136 149-288 1-154 (307)
331 COG4007 Predicted dehydrogenas 94.9 0.11 2.3E-06 47.3 7.3 86 160-249 33-128 (340)
332 PF05222 AlaDh_PNT_N: Alanine 94.9 0.24 5.1E-06 40.9 9.0 93 162-264 18-119 (136)
333 PF04016 DUF364: Domain of unk 94.9 0.061 1.3E-06 45.0 5.5 83 146-237 9-97 (147)
334 PRK07688 thiamine/molybdopteri 94.9 0.069 1.5E-06 50.9 6.6 37 144-180 20-57 (339)
335 PF03435 Saccharop_dh: Sacchar 94.8 0.024 5.2E-07 54.7 3.4 60 151-210 1-78 (386)
336 PRK12562 ornithine carbamoyltr 94.8 0.56 1.2E-05 44.6 12.4 92 145-236 153-276 (334)
337 COG0540 PyrB Aspartate carbamo 94.8 0.25 5.3E-06 46.1 9.6 61 146-206 156-231 (316)
338 PF03949 Malic_M: Malic enzyme 94.7 0.21 4.5E-06 45.6 9.0 150 108-285 4-195 (255)
339 PRK05597 molybdopterin biosynt 94.7 0.066 1.4E-06 51.4 6.1 37 144-180 24-61 (355)
340 PRK05086 malate dehydrogenase; 94.7 0.15 3.2E-06 48.1 8.3 89 149-237 1-120 (312)
341 PRK10669 putative cation:proto 94.6 0.038 8.1E-07 56.2 4.5 83 149-233 418-513 (558)
342 PRK09496 trkA potassium transp 94.6 0.087 1.9E-06 51.7 6.8 88 146-235 229-331 (453)
343 PLN03129 NADP-dependent malic 94.6 1.3 2.9E-05 44.9 15.0 184 92-307 287-517 (581)
344 PRK14027 quinate/shikimate deh 94.5 0.032 7E-07 51.8 3.4 37 146-182 125-162 (283)
345 TIGR01202 bchC 2-desacetyl-2-h 94.5 0.11 2.4E-06 48.3 7.0 85 147-236 144-232 (308)
346 cd01483 E1_enzyme_family Super 94.5 0.35 7.5E-06 39.8 9.2 31 150-180 1-32 (143)
347 PRK03659 glutathione-regulated 94.5 0.042 9E-07 56.4 4.3 87 148-236 400-499 (601)
348 PRK13814 pyrB aspartate carbam 94.4 0.2 4.4E-06 47.1 8.5 60 146-205 155-223 (310)
349 PRK13529 malate dehydrogenase; 94.4 2.6 5.5E-05 42.8 16.5 209 68-308 237-499 (563)
350 PRK00421 murC UDP-N-acetylmura 94.4 0.092 2E-06 52.0 6.5 109 145-253 4-133 (461)
351 PRK01368 murD UDP-N-acetylmura 94.4 0.075 1.6E-06 52.7 5.8 106 146-252 4-129 (454)
352 PRK11863 N-acetyl-gamma-glutam 94.4 0.14 3.1E-06 48.1 7.4 76 149-235 3-81 (313)
353 PRK06392 homoserine dehydrogen 94.4 0.2 4.3E-06 47.5 8.3 106 149-255 1-137 (326)
354 cd01338 MDH_choloroplast_like 94.3 0.35 7.7E-06 45.7 10.0 96 149-246 3-137 (322)
355 PRK05600 thiamine biosynthesis 94.3 0.072 1.6E-06 51.4 5.4 37 144-180 37-74 (370)
356 PRK06349 homoserine dehydrogen 94.3 0.22 4.8E-06 48.9 8.9 103 149-255 4-125 (426)
357 PRK12550 shikimate 5-dehydroge 94.3 0.11 2.3E-06 48.1 6.1 62 148-209 122-188 (272)
358 PRK04308 murD UDP-N-acetylmura 94.3 0.11 2.3E-06 51.3 6.5 108 146-253 3-136 (445)
359 PRK07878 molybdopterin biosynt 94.3 0.12 2.5E-06 50.3 6.7 36 144-179 38-74 (392)
360 PRK09880 L-idonate 5-dehydroge 94.2 0.17 3.7E-06 47.7 7.7 85 147-236 169-267 (343)
361 PRK11064 wecC UDP-N-acetyl-D-m 94.1 0.15 3.3E-06 49.9 7.3 69 143-211 315-398 (415)
362 PRK07411 hypothetical protein; 94.1 0.12 2.6E-06 50.2 6.4 36 144-179 34-70 (390)
363 PF00899 ThiF: ThiF family; I 94.1 0.052 1.1E-06 44.3 3.4 33 148-180 2-35 (135)
364 PRK07806 short chain dehydroge 94.1 0.18 4E-06 44.8 7.2 37 145-181 3-40 (248)
365 PLN02819 lysine-ketoglutarate 94.0 0.09 1.9E-06 56.9 5.9 64 147-210 568-659 (1042)
366 PLN02586 probable cinnamyl alc 94.0 0.24 5.2E-06 47.3 8.3 85 147-236 183-279 (360)
367 cd08230 glucose_DH Glucose deh 94.0 0.13 2.8E-06 48.8 6.4 85 147-236 172-270 (355)
368 KOG2711 Glycerol-3-phosphate d 94.0 0.25 5.4E-06 46.7 7.9 91 146-238 19-142 (372)
369 PF00070 Pyr_redox: Pyridine n 93.9 0.11 2.3E-06 38.4 4.5 35 150-184 1-35 (80)
370 PRK02472 murD UDP-N-acetylmura 93.9 0.095 2E-06 51.5 5.4 107 146-252 3-133 (447)
371 PRK04148 hypothetical protein; 93.9 0.11 2.4E-06 42.8 4.8 61 147-208 16-86 (134)
372 PRK08300 acetaldehyde dehydrog 93.8 0.22 4.8E-06 46.6 7.4 83 148-235 4-101 (302)
373 COG2344 AT-rich DNA-binding pr 93.8 0.063 1.4E-06 46.5 3.4 62 150-211 86-158 (211)
374 PRK15076 alpha-galactosidase; 93.8 0.088 1.9E-06 51.8 4.9 109 149-258 2-169 (431)
375 PRK03562 glutathione-regulated 93.8 0.083 1.8E-06 54.5 4.9 84 148-233 400-496 (621)
376 TIGR03366 HpnZ_proposed putati 93.7 0.18 4E-06 46.1 6.6 35 147-181 120-155 (280)
377 cd08237 ribitol-5-phosphate_DH 93.7 0.24 5.3E-06 46.8 7.6 86 147-236 163-257 (341)
378 cd05294 LDH-like_MDH_nadp A la 93.7 0.54 1.2E-05 44.2 9.8 107 149-258 1-146 (309)
379 PRK14804 ornithine carbamoyltr 93.7 0.63 1.4E-05 43.8 10.2 62 145-206 150-225 (311)
380 PTZ00317 NADP-dependent malic 93.5 5.3 0.00011 40.5 16.9 208 68-307 239-497 (559)
381 PRK03803 murD UDP-N-acetylmura 93.5 0.16 3.4E-06 50.1 6.3 105 148-252 6-133 (448)
382 TIGR01772 MDH_euk_gproteo mala 93.5 0.3 6.4E-06 46.1 7.7 91 150-242 1-121 (312)
383 cd00300 LDH_like L-lactate deh 93.4 0.27 5.9E-06 46.0 7.4 84 151-235 1-115 (300)
384 PRK08192 aspartate carbamoyltr 93.4 0.4 8.7E-06 45.7 8.6 62 145-206 156-233 (338)
385 PF03447 NAD_binding_3: Homose 93.4 0.078 1.7E-06 42.1 3.2 95 155-254 1-112 (117)
386 TIGR01761 thiaz-red thiazoliny 93.4 0.44 9.6E-06 45.5 8.9 106 149-257 4-119 (343)
387 PLN00106 malate dehydrogenase 93.3 0.22 4.7E-06 47.2 6.5 92 147-238 17-138 (323)
388 cd00704 MDH Malate dehydrogena 93.3 0.81 1.7E-05 43.3 10.3 101 150-252 2-141 (323)
389 cd01337 MDH_glyoxysomal_mitoch 93.2 0.47 1E-05 44.7 8.5 87 149-236 1-118 (310)
390 PTZ00325 malate dehydrogenase; 93.1 0.24 5.1E-06 46.9 6.5 65 145-209 5-86 (321)
391 PRK14851 hypothetical protein; 93.1 0.21 4.6E-06 51.9 6.6 36 144-179 39-75 (679)
392 CHL00194 ycf39 Ycf39; Provisio 93.1 0.15 3.2E-06 47.8 5.0 60 149-208 1-73 (317)
393 PRK05678 succinyl-CoA syntheta 93.1 0.98 2.1E-05 42.1 10.4 106 148-257 8-120 (291)
394 PRK14852 hypothetical protein; 93.1 1.1 2.5E-05 48.2 11.9 160 144-311 328-545 (989)
395 COG0673 MviM Predicted dehydro 93.1 0.17 3.7E-06 47.5 5.5 64 149-212 4-80 (342)
396 COG1063 Tdh Threonine dehydrog 93.1 0.2 4.4E-06 47.8 6.0 85 148-237 169-271 (350)
397 TIGR02822 adh_fam_2 zinc-bindi 93.0 0.35 7.6E-06 45.5 7.5 85 147-236 165-255 (329)
398 PRK08328 hypothetical protein; 92.9 0.12 2.6E-06 46.5 4.0 37 144-180 23-60 (231)
399 PRK00141 murD UDP-N-acetylmura 92.9 0.15 3.2E-06 50.8 5.0 109 145-253 12-147 (473)
400 PF02629 CoA_binding: CoA bind 92.8 0.21 4.6E-06 38.4 4.7 63 149-211 4-74 (96)
401 TIGR01532 E4PD_g-proteo D-eryt 92.8 0.27 5.9E-06 46.6 6.4 28 150-177 1-32 (325)
402 PRK08040 putative semialdehyde 92.8 0.34 7.4E-06 46.1 7.0 83 147-235 3-97 (336)
403 PRK04523 N-acetylornithine car 92.7 1 2.2E-05 42.9 10.0 61 146-206 166-251 (335)
404 PRK15182 Vi polysaccharide bio 92.7 0.65 1.4E-05 45.7 9.0 93 144-239 310-416 (425)
405 cd05290 LDH_3 A subgroup of L- 92.7 0.22 4.7E-06 46.9 5.5 59 150-208 1-77 (307)
406 PRK05442 malate dehydrogenase; 92.7 1.1 2.3E-05 42.6 10.2 95 149-245 5-138 (326)
407 cd01492 Aos1_SUMO Ubiquitin ac 92.6 0.12 2.7E-06 45.3 3.5 37 144-180 17-54 (197)
408 PRK01438 murD UDP-N-acetylmura 92.5 0.18 4E-06 50.0 5.0 109 143-252 11-147 (480)
409 TIGR01759 MalateDH-SF1 malate 92.4 0.4 8.6E-06 45.4 6.9 94 149-244 4-136 (323)
410 cd01491 Ube1_repeat1 Ubiquitin 92.4 0.64 1.4E-05 43.3 8.1 37 144-180 15-52 (286)
411 cd05283 CAD1 Cinnamyl alcohol 92.4 0.5 1.1E-05 44.3 7.6 85 147-236 169-264 (337)
412 TIGR01851 argC_other N-acetyl- 92.3 0.56 1.2E-05 44.1 7.6 75 150-235 3-80 (310)
413 PLN02662 cinnamyl-alcohol dehy 92.3 0.41 8.9E-06 44.4 6.8 62 147-208 3-85 (322)
414 PRK10206 putative oxidoreducta 92.3 0.27 5.8E-06 46.9 5.6 64 149-212 2-77 (344)
415 PRK08762 molybdopterin biosynt 92.2 0.27 5.9E-06 47.4 5.7 37 144-180 131-168 (376)
416 PRK07877 hypothetical protein; 92.2 0.3 6.5E-06 51.1 6.3 79 144-224 103-220 (722)
417 PRK06728 aspartate-semialdehyd 92.2 0.64 1.4E-05 44.4 8.1 82 147-235 4-99 (347)
418 PLN03209 translocon at the inn 92.2 0.18 4E-06 51.1 4.6 36 146-181 78-114 (576)
419 PLN02214 cinnamoyl-CoA reducta 92.1 0.39 8.4E-06 45.5 6.6 64 145-208 7-90 (342)
420 cd01485 E1-1_like Ubiquitin ac 92.1 0.16 3.5E-06 44.5 3.6 37 144-180 15-52 (198)
421 PRK08374 homoserine dehydrogen 92.0 1 2.3E-05 42.8 9.3 102 149-255 3-143 (336)
422 PLN02178 cinnamyl-alcohol dehy 92.0 0.74 1.6E-05 44.3 8.4 34 147-180 178-211 (375)
423 PRK15181 Vi polysaccharide bio 92.0 0.3 6.6E-06 46.3 5.7 35 146-180 13-48 (348)
424 PF05368 NmrA: NmrA-like famil 91.9 0.15 3.3E-06 45.2 3.3 60 151-210 1-75 (233)
425 TIGR03649 ergot_EASG ergot alk 91.8 0.37 8E-06 44.0 5.9 61 150-210 1-78 (285)
426 KOG4230 C1-tetrahydrofolate sy 91.8 0.43 9.3E-06 48.0 6.5 134 144-307 158-292 (935)
427 cd01336 MDH_cytoplasmic_cytoso 91.7 0.45 9.8E-06 45.1 6.5 93 149-243 3-134 (325)
428 PRK13376 pyrB bifunctional asp 91.7 0.87 1.9E-05 45.9 8.7 91 145-235 171-293 (525)
429 PRK14874 aspartate-semialdehyd 91.7 0.48 1E-05 45.0 6.6 83 148-236 1-95 (334)
430 PRK12937 short chain dehydroge 91.6 0.64 1.4E-05 41.0 7.1 34 146-179 3-37 (245)
431 PRK06523 short chain dehydroge 91.6 1 2.2E-05 40.3 8.5 39 144-182 5-44 (260)
432 PRK10537 voltage-gated potassi 91.6 0.4 8.6E-06 46.7 6.1 83 148-232 240-333 (393)
433 KOG0022 Alcohol dehydrogenase, 91.6 0.19 4.1E-06 47.1 3.6 37 147-183 192-229 (375)
434 PRK06153 hypothetical protein; 91.6 0.19 4.1E-06 48.5 3.7 36 144-179 172-208 (393)
435 PLN02383 aspartate semialdehyd 91.6 0.81 1.8E-05 43.7 8.0 83 147-235 6-100 (344)
436 cd08255 2-desacetyl-2-hydroxye 91.6 0.62 1.4E-05 42.1 7.1 86 147-237 97-192 (277)
437 TIGR03215 ac_ald_DH_ac acetald 91.5 0.71 1.5E-05 42.9 7.3 64 149-212 2-77 (285)
438 PLN00112 malate dehydrogenase 91.5 1.3 2.8E-05 43.8 9.4 101 149-251 101-240 (444)
439 cd08245 CAD Cinnamyl alcohol d 91.4 0.82 1.8E-05 42.4 7.8 85 147-236 162-257 (330)
440 PLN02514 cinnamyl-alcohol dehy 91.4 0.52 1.1E-05 44.8 6.6 85 147-236 180-276 (357)
441 COG2910 Putative NADH-flavin r 91.4 0.47 1E-05 41.3 5.5 62 149-210 1-73 (211)
442 PRK07370 enoyl-(acyl carrier p 91.3 0.38 8.3E-06 43.4 5.4 36 145-180 3-41 (258)
443 KOG0399 Glutamate synthase [Am 91.3 0.53 1.1E-05 51.0 6.9 65 146-210 1783-1881(2142)
444 PLN02657 3,8-divinyl protochlo 91.3 0.34 7.4E-06 47.0 5.3 39 143-181 55-94 (390)
445 TIGR01771 L-LDH-NAD L-lactate 91.3 0.53 1.2E-05 44.1 6.4 83 153-235 1-113 (299)
446 PLN02989 cinnamyl-alcohol dehy 91.3 0.6 1.3E-05 43.5 6.8 62 147-208 4-86 (325)
447 PRK07533 enoyl-(acyl carrier p 91.2 0.84 1.8E-05 41.2 7.5 37 145-181 7-46 (258)
448 cd00755 YgdL_like Family of ac 91.2 0.26 5.6E-06 44.4 4.0 36 144-179 7-43 (231)
449 TIGR01142 purT phosphoribosylg 91.1 0.39 8.5E-06 46.0 5.5 57 150-206 1-69 (380)
450 cd08239 THR_DH_like L-threonin 91.1 0.66 1.4E-05 43.4 7.0 86 147-237 163-264 (339)
451 PLN02695 GDP-D-mannose-3',5'-e 91.1 0.44 9.5E-06 45.7 5.8 61 147-207 20-93 (370)
452 PRK05884 short chain dehydroge 91.1 0.51 1.1E-05 41.7 5.8 32 150-181 2-34 (223)
453 PRK08664 aspartate-semialdehyd 91.0 0.88 1.9E-05 43.5 7.7 80 149-235 4-107 (349)
454 cd01490 Ube1_repeat2 Ubiquitin 91.0 0.89 1.9E-05 44.8 7.8 31 150-180 1-37 (435)
455 PRK15057 UDP-glucose 6-dehydro 90.9 0.66 1.4E-05 45.1 6.9 62 147-208 295-368 (388)
456 PRK06079 enoyl-(acyl carrier p 90.9 0.61 1.3E-05 41.9 6.3 36 145-180 4-42 (252)
457 PRK07889 enoyl-(acyl carrier p 90.9 0.34 7.4E-06 43.7 4.6 37 145-181 4-43 (256)
458 PRK08324 short chain dehydroge 90.8 0.38 8.1E-06 50.2 5.4 39 144-182 418-457 (681)
459 TIGR03466 HpnA hopanoid-associ 90.8 0.39 8.5E-06 44.4 5.0 60 149-208 1-73 (328)
460 TIGR01296 asd_B aspartate-semi 90.8 0.77 1.7E-05 43.7 7.1 80 150-235 1-92 (339)
461 PRK03806 murD UDP-N-acetylmura 90.7 0.4 8.6E-06 47.0 5.2 105 146-251 4-129 (438)
462 cd08281 liver_ADH_like1 Zinc-d 90.7 0.54 1.2E-05 44.9 6.0 85 147-236 191-291 (371)
463 TIGR01214 rmlD dTDP-4-dehydror 90.7 0.45 9.8E-06 43.3 5.2 57 150-209 1-60 (287)
464 PLN02427 UDP-apiose/xylose syn 90.6 0.48 1E-05 45.5 5.6 65 143-207 9-94 (386)
465 PRK07200 aspartate/ornithine c 90.5 0.97 2.1E-05 44.0 7.5 62 145-206 184-269 (395)
466 TIGR03451 mycoS_dep_FDH mycoth 90.4 1.1 2.3E-05 42.5 7.8 85 147-236 176-277 (358)
467 PRK12367 short chain dehydroge 90.4 0.43 9.3E-06 43.1 4.8 65 144-208 10-88 (245)
468 TIGR02825 B4_12hDH leukotriene 90.4 0.92 2E-05 42.2 7.1 84 147-236 138-238 (325)
469 PRK15116 sulfur acceptor prote 90.3 0.38 8.3E-06 44.3 4.4 36 144-179 26-62 (268)
470 PLN02272 glyceraldehyde-3-phos 90.3 0.34 7.5E-06 47.3 4.2 31 149-179 86-118 (421)
471 PRK08265 short chain dehydroge 90.3 0.57 1.2E-05 42.3 5.5 37 145-181 3-40 (261)
472 TIGR01019 sucCoAalpha succinyl 90.2 2.2 4.8E-05 39.7 9.4 107 148-257 6-118 (286)
473 COG0039 Mdh Malate/lactate deh 90.2 0.74 1.6E-05 43.3 6.2 59 149-207 1-77 (313)
474 PRK06398 aldose dehydrogenase; 90.2 1.2 2.6E-05 40.1 7.5 38 145-182 3-41 (258)
475 cd08234 threonine_DH_like L-th 90.1 0.54 1.2E-05 43.7 5.3 87 147-238 159-260 (334)
476 PRK08628 short chain dehydroge 90.1 0.54 1.2E-05 42.1 5.1 37 145-181 4-41 (258)
477 TIGR01758 MDH_euk_cyt malate d 89.9 0.7 1.5E-05 43.8 5.9 93 150-244 1-132 (324)
478 cd08296 CAD_like Cinnamyl alco 89.9 1.4 3.1E-05 41.1 8.1 85 147-236 163-260 (333)
479 PLN02896 cinnamyl-alcohol dehy 89.8 0.54 1.2E-05 44.5 5.2 39 143-181 5-44 (353)
480 PRK07424 bifunctional sterol d 89.8 0.42 9E-06 46.7 4.4 64 145-208 175-254 (406)
481 PRK08217 fabG 3-ketoacyl-(acyl 89.6 0.56 1.2E-05 41.5 4.8 36 146-181 3-39 (253)
482 TIGR01087 murD UDP-N-acetylmur 89.4 0.49 1.1E-05 46.3 4.6 103 150-253 1-128 (433)
483 PRK05671 aspartate-semialdehyd 89.3 1.4 3.1E-05 41.9 7.6 80 149-235 5-97 (336)
484 PRK12939 short chain dehydroge 89.3 0.56 1.2E-05 41.5 4.6 37 145-181 4-41 (250)
485 TIGR01777 yfcH conserved hypot 89.3 0.94 2E-05 41.1 6.2 57 152-208 2-66 (292)
486 cd08269 Zn_ADH9 Alcohol dehydr 89.3 1.2 2.5E-05 40.8 6.9 86 147-237 129-231 (312)
487 PRK05865 hypothetical protein; 89.3 1.6 3.5E-05 46.6 8.6 90 149-238 1-105 (854)
488 PRK07523 gluconate 5-dehydroge 89.2 0.62 1.3E-05 41.7 4.8 37 145-181 7-44 (255)
489 TIGR03589 PseB UDP-N-acetylglu 89.2 0.66 1.4E-05 43.6 5.2 62 146-207 2-82 (324)
490 PF00044 Gp_dh_N: Glyceraldehy 89.2 0.47 1E-05 39.9 3.7 29 150-178 2-31 (151)
491 TIGR00978 asd_EA aspartate-sem 89.2 1.3 2.7E-05 42.3 7.1 82 149-235 1-104 (341)
492 cd08293 PTGR2 Prostaglandin re 89.2 0.74 1.6E-05 43.1 5.6 82 148-235 155-254 (345)
493 TIGR01381 E1_like_apg7 E1-like 89.2 1.1 2.4E-05 46.1 6.9 64 103-179 306-370 (664)
494 PRK12771 putative glutamate sy 89.1 0.54 1.2E-05 47.8 4.9 36 145-180 134-169 (564)
495 PRK10309 galactitol-1-phosphat 89.1 2.2 4.9E-05 40.0 8.8 35 147-181 160-195 (347)
496 cd08233 butanediol_DH_like (2R 89.0 1.2 2.6E-05 41.9 6.9 85 147-236 172-273 (351)
497 PRK08594 enoyl-(acyl carrier p 89.0 1.7 3.7E-05 39.2 7.6 36 145-180 4-42 (257)
498 KOG0089 Methylenetetrahydrofol 89.0 0.35 7.6E-06 44.2 3.0 93 143-242 161-255 (309)
499 PRK06196 oxidoreductase; Provi 88.9 0.76 1.6E-05 42.8 5.4 37 145-181 23-60 (315)
500 PRK06128 oxidoreductase; Provi 88.9 0.49 1.1E-05 43.8 4.0 36 145-180 52-88 (300)
No 1
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=9.2e-74 Score=537.12 Aligned_cols=311 Identities=34% Similarity=0.511 Sum_probs=277.7
Q ss_pred CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102 6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK 84 (317)
Q Consensus 6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 84 (317)
|+|||++++++.+...+.|++.+++..+... +...+.+.+.+.++|++++. ..++++++++++|+||+|+++|+|+|+
T Consensus 1 ~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 1 MKPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDN 79 (323)
T ss_pred CCceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceeccc
Confidence 5789999999988888888887777543221 22334455668899998875 458999999999999999999999999
Q ss_pred CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccC--cccccccccCCeEEEEecChhHHH
Q 042102 85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKG--EFKMTTKFTGKSVGILGMGRIGTA 162 (317)
Q Consensus 85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~vgIiG~G~iG~~ 162 (317)
||+++|+++||.|+|+||+++++||||++++||+++|++.++++.+++|.|... ....+.+|+|+|+||||+|+||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999732 112478999999999999999999
Q ss_pred HHHHHh-hCCCEEEEeCCCCCCCC--C-ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102 163 IAKRAE-AFDCIIGYNSRTEKPNL--N-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 163 ~a~~l~-~~G~~V~~~~~~~~~~~--~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
+|++++ +|||+|.+|++...... . .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 99999999998753321 1 1234689999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102 239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317 (317)
Q Consensus 239 ~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 317 (317)
+||++||+++|++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++...+++||.+|++|+++.+.|+
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999999999999865 589999999999999999999999999999999999999999988775
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-74 Score=535.75 Aligned_cols=306 Identities=31% Similarity=0.468 Sum_probs=275.8
Q ss_pred CCcEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102 6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI 85 (317)
Q Consensus 6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 85 (317)
++++++.++++.++.++.+.+...+.........++.+.+.++++|++++ +.+++++++++.+|+||+|+++|+|+|||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~i 80 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNI 80 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEcccccccc
Confidence 67899999999999998887652222211122234455667889999888 77899999999999999999999999999
Q ss_pred ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHH
Q 042102 86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK 165 (317)
Q Consensus 86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~ 165 (317)
|+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+++|.|.+.. ..+.+|+||||||||+|+||+.+|+
T Consensus 81 d~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~-~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 81 DLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKA-FRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred CHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccc-cccccccCCEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998632 3467999999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102 166 RAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 166 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd 241 (317)
++++|||+|++||+..... .+.....+|++++++||+|++|+|+|++|+||||++.|++||+|++|||+|||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 9999999999999954332 223446789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeeCCCCCCCCCc-ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102 242 EHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL 313 (317)
Q Consensus 242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~~-~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 313 (317)
++||++||++|+|+||+||||++||++++ |||++|||++|||+||+|.|+++++...+++|+.+|++|+++.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 312 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVV 312 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999885 9999999999999999999999999999999999999999853
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=9e-73 Score=528.43 Aligned_cols=310 Identities=39% Similarity=0.624 Sum_probs=281.5
Q ss_pred CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102 6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK 84 (317)
Q Consensus 6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 84 (317)
+|++++.+..+.+...+++.+.|++..+... .... .+.+.++++|++++....++++++++++|+||+|+..|+||||
T Consensus 1 mk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~ 79 (324)
T COG1052 1 MKIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDN 79 (324)
T ss_pred CCcEEEecCcCCHHHHHHhhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCc
Confidence 5788999999999999999988887765432 2122 5566788999999887889999999999999999999999999
Q ss_pred CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc---ccccccccCCeEEEEecChhHH
Q 042102 85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE---FKMTTKFTGKSVGILGMGRIGT 161 (317)
Q Consensus 85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---~~~~~~l~g~~vgIiG~G~iG~ 161 (317)
||+++|+++||.|+|+|++++++||||++++||++.|++.++++.+++|.|.... ...+++++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998542 2457899999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102 162 AIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 162 ~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg 237 (317)
++|+++++|||+|.||++++.+. .++.+ .+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y-~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG 238 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARY-VDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG 238 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCcee-ccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence 99999999999999999987522 22333 44999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHhCCceEEEeeCCCCCCCC-CcccCCCCc---eEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDV-PEELIGLEN---VVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL 313 (317)
Q Consensus 238 ~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~-~~~L~~~pn---vi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 313 (317)
++||++||++||++|+|+||++|||+.||.+ +++|++++| |++|||+|+.|.+++.+|++.+++|+.+|++|+++.
T Consensus 239 ~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~ 318 (324)
T COG1052 239 GLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPP 318 (324)
T ss_pred cccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999986 567777766 999999999999999999999999999999999999
Q ss_pred CCCC
Q 042102 314 TPVV 317 (317)
Q Consensus 314 ~~v~ 317 (317)
++|+
T Consensus 319 ~~v~ 322 (324)
T COG1052 319 NEVN 322 (324)
T ss_pred CCCC
Confidence 8875
No 4
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-71 Score=519.03 Aligned_cols=300 Identities=27% Similarity=0.427 Sum_probs=263.9
Q ss_pred cEEEEeCC--CChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102 8 IIVLMVCP--VSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI 85 (317)
Q Consensus 8 ~~vl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 85 (317)
|||+++++ +.+...+.|++.+++..+. .. .++.+.+.+.++|+++++ ..++++++++++|+||+|+++|+|+|+|
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 77 (311)
T PRK08410 1 MKIVILDAKTLGDKDLSVFEEFGDFQIYP-TT-SPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNV 77 (311)
T ss_pred CeEEEEecCCCChhhHHHHhhCceEEEeC-CC-CHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccc
Confidence 36887776 4556667787766665432 22 234455668899998875 5689999999999999999999999999
Q ss_pred ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-----cccccccCCeEEEEecChhH
Q 042102 86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRIG 160 (317)
Q Consensus 86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgIiG~G~iG 160 (317)
|+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..... ..+++|+||||||||+|+||
T Consensus 78 d~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG 157 (311)
T PRK08410 78 DIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIG 157 (311)
T ss_pred cHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHH
Confidence 9999999999999999999999999999999999999999999999999974221 12468999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102 161 TAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240 (317)
Q Consensus 161 ~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v 240 (317)
+.+|+++++|||+|++||++...........++++++++||+|++|+|+|++|+|+||++.|++||||++|||+|||++|
T Consensus 158 ~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vV 237 (311)
T PRK08410 158 KRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIV 237 (311)
T ss_pred HHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcccc
Confidence 99999999999999999987543222223568999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCceEEEeeCCCCCCCCCc-ccCCC---CceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGL---ENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP 311 (317)
Q Consensus 241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~~-~L~~~---pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 311 (317)
|++||+++|++|+|+ |+||||++||++++ |||++ |||++|||+||+|.+++.++.+.+++|+.+|++|++
T Consensus 238 De~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 238 NEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred CHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999 99999999998764 89986 899999999999999999999999999999999863
No 5
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.7e-71 Score=523.20 Aligned_cols=312 Identities=39% Similarity=0.580 Sum_probs=279.1
Q ss_pred CCcEEEEeCCCChhHHHHHHhcCeEEEecCC-CChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102 6 NNIIVLMVCPVSNYLEQEIEKSFKVFKLWHF-EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK 84 (317)
Q Consensus 6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 84 (317)
|||||++++++.++..+.|++.+++..+... ...++.+.+.+.++|+++++...++++++++++|+||||+++|+|+|+
T Consensus 1 ~~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 1 MKPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDN 80 (333)
T ss_pred CCceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccc
Confidence 5789999998888888888877766543221 113444566788999998876678999999999999999999999999
Q ss_pred CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc------ccccccccCCeEEEEecCh
Q 042102 85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE------FKMTTKFTGKSVGILGMGR 158 (317)
Q Consensus 85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~vgIiG~G~ 158 (317)
||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+.. ...+.+|+|+||||||+|.
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997421 1246799999999999999
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCCC---ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 159 IGTAIAKRAEAFDCIIGYNSRTEKPNLN---YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 159 iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
||+.+|++|++|||+|.+|+++...... .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 9999999999999999999987643211 1124589999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP 315 (317)
Q Consensus 236 rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 315 (317)
||++||+++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++||.+|++|+++.|.
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~ 320 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL 320 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999877999999999999999999999999999999999999999999887
Q ss_pred CC
Q 042102 316 VV 317 (317)
Q Consensus 316 v~ 317 (317)
|+
T Consensus 321 v~ 322 (333)
T PRK13243 321 VN 322 (333)
T ss_pred cC
Confidence 74
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-70 Score=528.63 Aligned_cols=312 Identities=26% Similarity=0.389 Sum_probs=279.2
Q ss_pred CCCCcEEEEeCCCChhHHHHHHhc-C-eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCC
Q 042102 4 NSNNIIVLMVCPVSNYLEQEIEKS-F-KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVG 81 (317)
Q Consensus 4 ~~~~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G 81 (317)
++++|||++++++.+...+.|++. + ++..+. ....++.+.+.++++|++++++..++++++++++|+||||+++|+|
T Consensus 7 ~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G 85 (409)
T PRK11790 7 PKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHK-GALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIG 85 (409)
T ss_pred CCCCeEEEEECCCCHHHHHHHHhcCCceEEECC-CCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECcee
Confidence 346789999998888888888764 5 554432 2223444566788999987776678999999999999999999999
Q ss_pred CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHH
Q 042102 82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGT 161 (317)
Q Consensus 82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~ 161 (317)
+||||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.+.. ..+.+|.||||||||+|+||+
T Consensus 86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~L~gktvGIiG~G~IG~ 164 (409)
T PRK11790 86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-AGSFEVRGKTLGIVGYGHIGT 164 (409)
T ss_pred cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-cCcccCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999998532 346899999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCC-CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102 162 AIAKRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240 (317)
Q Consensus 162 ~~a~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v 240 (317)
.+|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus 165 ~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 244 (409)
T PRK11790 165 QLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV 244 (409)
T ss_pred HHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc
Confidence 999999999999999998654322 2334568999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCceEEEeeCCCCCCCCC-----cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102 241 DEHELVSALLQGRLGGAGLDVFEHEPDVP-----EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP 315 (317)
Q Consensus 241 d~~aL~~al~~g~i~ga~lDV~~~EP~~~-----~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 315 (317)
|++||+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++++++...+++|+.+|++|+++.+.
T Consensus 245 de~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~ 324 (409)
T PRK11790 245 DIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSA 324 (409)
T ss_pred CHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 99999999999999999999999999875 4899999999999999999999999999999999999999999887
Q ss_pred CC
Q 042102 316 VV 317 (317)
Q Consensus 316 v~ 317 (317)
||
T Consensus 325 vn 326 (409)
T PRK11790 325 VN 326 (409)
T ss_pred ee
Confidence 75
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-70 Score=512.53 Aligned_cols=303 Identities=28% Similarity=0.470 Sum_probs=262.5
Q ss_pred EEEEeCCC----ChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102 9 IVLMVCPV----SNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK 84 (317)
Q Consensus 9 ~vl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 84 (317)
||++++.. .+...+.|++.+..+...... .++.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+|+
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDAT-TPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCC-CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccc
Confidence 57777642 234456666554333222222 334456678899988764 567999999999999999999999999
Q ss_pred CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-----cccccccCCeEEEEecChh
Q 042102 85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRI 159 (317)
Q Consensus 85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgIiG~G~i 159 (317)
||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|..... ..+.+|+||||||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 99999999999999999999999999999999999999999999999999974211 1246899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102 160 GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239 (317)
Q Consensus 160 G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~ 239 (317)
|+.+|+++++|||+|++|+++.... .....++++++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~--~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA--RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc--cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 9999999999999999999864322 12345899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCC--CCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102 240 VDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIG--LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316 (317)
Q Consensus 240 vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~--~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 316 (317)
||++||+++|++|+|+||+||||++||+++ +|||+ +|||++|||+||+|.++++++...+++||.+|++|+++ +.|
T Consensus 238 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v 316 (317)
T PRK06487 238 VDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVV 316 (317)
T ss_pred cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence 999999999999999999999999999876 48995 89999999999999999999999999999999999865 444
No 8
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.4e-69 Score=518.34 Aligned_cols=315 Identities=28% Similarity=0.399 Sum_probs=276.5
Q ss_pred CCCCCcEEEEeCCCChh-HHHHHHhc-CeEEEecC-C-CChHHHHhhcc-CCceEEEEeCCCCCCHHHHhcCCC--ceEE
Q 042102 3 NNSNNIIVLMVCPVSNY-LEQEIEKS-FKVFKLWH-F-EDKEQFINTHK-DSIQAVVGSAAAGADAELIESLPK--LEIV 75 (317)
Q Consensus 3 ~~~~~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~-~-~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i 75 (317)
|+..|++|+++.++.++ ..+.|.+. +++..+.. . ...++.+.+.+ .++|+++++...++++++++++|+ ||+|
T Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 11 NPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 56679999999998774 67778764 66654321 1 12344455555 569998887667899999999996 6999
Q ss_pred EECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCcc-Cc-ccccccccCCeEEE
Q 042102 76 ATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK-GE-FKMTTKFTGKSVGI 153 (317)
Q Consensus 76 ~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~-~~-~~~~~~l~g~~vgI 153 (317)
+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.. .. ...+.+++|+||||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGI 170 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGV 170 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998852 11 12467899999999
Q ss_pred EecChhHHHHHHHHh-hCCCEEEEeCCCCCCCC-------C------------ccccCCHHHhcccCCEEEEeccCChhh
Q 042102 154 LGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPNL-------N------------YKYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 154 iG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
||+|.||+.+|++++ +|||+|++||++..... + .....++++++++||+|++|+|+|++|
T Consensus 171 iG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T 250 (386)
T PLN02306 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTT 250 (386)
T ss_pred ECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhh
Confidence 999999999999985 99999999998753210 0 112358999999999999999999999
Q ss_pred hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHH
Q 042102 214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRK 293 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~ 293 (317)
+|||+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||+++++||++|||++|||+||+|.++++
T Consensus 251 ~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 251 YHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTRE 330 (386)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC
Q 042102 294 AMADLVVGNLQAHFGKKPLLTPVV 317 (317)
Q Consensus 294 ~~~~~~~~nl~~~~~g~~~~~~v~ 317 (317)
++.+.+++|+.+|++|+++.|.|+
T Consensus 331 ~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 331 GMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCccccc
Confidence 999999999999999999988875
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-69 Score=503.84 Aligned_cols=270 Identities=27% Similarity=0.453 Sum_probs=244.8
Q ss_pred HHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHH
Q 042102 40 EQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAV 119 (317)
Q Consensus 40 ~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~ 119 (317)
++.+.+.++++|++++ +..++++++++++|+||+|+++|+|+|+||+++|.++||.|+|+||+++.+||||++++||++
T Consensus 35 ~~~~~~~~~~~d~ii~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~ 113 (314)
T PRK06932 35 AEQTIERAKDADIVIT-SKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL 113 (314)
T ss_pred hHHHHHHhCCCcEEEE-eCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence 3444566789998776 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHcCCCccCcc-----cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHH
Q 042102 120 LRRICESDRYVRSGEWKKGEF-----KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLI 194 (317)
Q Consensus 120 ~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ 194 (317)
+|++..+++.+++|.|..... ..+.+|+|+||||||+|.||+.+|+++++|||+|++|++....... ....+++
T Consensus 114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~ 192 (314)
T PRK06932 114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFE 192 (314)
T ss_pred HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHH
Confidence 999999999999999973211 1246899999999999999999999999999999999976432211 1246899
Q ss_pred HhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccC
Q 042102 195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELI 273 (317)
Q Consensus 195 el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~ 273 (317)
+++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+++ +|||
T Consensus 193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~ 272 (314)
T PRK06932 193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI 272 (314)
T ss_pred HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875 4888
Q ss_pred ----CCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102 274 ----GLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP 311 (317)
Q Consensus 274 ----~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 311 (317)
++|||++|||+||+|.++++++.+.+++||.+|++|++
T Consensus 273 ~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 273 QAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999998763
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=5.3e-68 Score=502.87 Aligned_cols=304 Identities=26% Similarity=0.387 Sum_probs=265.9
Q ss_pred CCCcEEEEeCCCChhH----HHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCC
Q 042102 5 SNNIIVLMVCPVSNYL----EQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSV 80 (317)
Q Consensus 5 ~~~~~vl~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~ 80 (317)
++|||||++.+..+.. .+.+ +.+++..+.. . ..+++.+.++++|+++++ ..++++++++.+|+||||+++++
T Consensus 16 ~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~ 91 (347)
T PLN02928 16 MRPTRVLFCGPEFPASYSYTREYL-QKYPFIQVDA-V-AREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGV 91 (347)
T ss_pred CCCCEEEEECCCchhHHHHHHHHh-hcCCeeEecC-C-CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCc
Confidence 5689999998777653 2333 3344443322 2 233355668899988764 56799999999999999999999
Q ss_pred CCCcCChhhHhhCCcEEEeCCCC---CcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecC
Q 042102 81 GLDKIDLARCKEKGIRVANTPDV---LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMG 157 (317)
Q Consensus 81 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G 157 (317)
|+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.++++.|.. +.+.+|+|+|+||||+|
T Consensus 92 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvGIiG~G 168 (347)
T PLN02928 92 GLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE---PIGDTLFGKTVFILGYG 168 (347)
T ss_pred ccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc---ccccCCCCCEEEEECCC
Confidence 99999999999999999999985 7899999999999999999999999999999964 34678999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCCC----------------ccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 158 RIGTAIAKRAEAFDCIIGYNSRTEKPNLN----------------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 158 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
.||+.+|++|++|||+|++|+++...... .....++++++++||+|++|+|+|++|+++|+++.
T Consensus 169 ~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence 99999999999999999999987432110 01346899999999999999999999999999999
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVV 300 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~ 300 (317)
|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+++ +|||++|||++|||+||+|.++++++.+.++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 4899999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCC
Q 042102 301 GNLQAHFGKKPLLTP 315 (317)
Q Consensus 301 ~nl~~~~~g~~~~~~ 315 (317)
+|+.+|++|+++.+.
T Consensus 329 ~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 329 DAALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHHCCCCCCce
Confidence 999999999988653
No 11
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-68 Score=504.86 Aligned_cols=294 Identities=25% Similarity=0.388 Sum_probs=260.9
Q ss_pred HHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeC--CCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcE
Q 042102 20 LEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSA--AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR 96 (317)
Q Consensus 20 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~ 96 (317)
+++.|++. ++++...+.+..++.+.+.++++|++++.. ..++++++++++|+||||+++|+|+||||+++|.++||.
T Consensus 67 ~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~ 146 (386)
T PLN03139 67 IRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLT 146 (386)
T ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeE
Confidence 55667665 555543332223455567789999988753 246999999999999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCc-ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEE
Q 042102 97 VANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE-FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG 175 (317)
Q Consensus 97 v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~ 175 (317)
|+|++|+++.+||||++++||++.|++.++++.+++|.|.... ...+++|.|+||||||+|+||+.+|++|++|||+|.
T Consensus 147 V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~ 226 (386)
T PLN03139 147 VAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLL 226 (386)
T ss_pred EEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999999999997422 124679999999999999999999999999999999
Q ss_pred EeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 176 YNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 176 ~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
+||++..+. .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|+++|+
T Consensus 227 ~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 227 YHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred EECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 999875322 223344689999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102 251 QGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL 313 (317)
Q Consensus 251 ~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 313 (317)
+|+|+||++|||++||++. +|||.+|||++|||+||.|.+++.++++.+++||.+|++|+++.
T Consensus 307 sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~ 370 (386)
T PLN03139 307 SGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP 370 (386)
T ss_pred cCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999876 48999999999999999999999999999999999999999653
No 12
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-68 Score=505.68 Aligned_cols=295 Identities=26% Similarity=0.434 Sum_probs=262.7
Q ss_pred HHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeC--CCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEE
Q 042102 21 EQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSA--AAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97 (317)
Q Consensus 21 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v 97 (317)
++.|++. ++++...+.+..++.+.+.++++|++++++ ..++++++++++|+||||+++|+|+||||+++|+++||.|
T Consensus 61 ~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 61 RKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEE
Confidence 3556655 566543322223455567789999998753 3579999999999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcc-cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEE
Q 042102 98 ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY 176 (317)
Q Consensus 98 ~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~ 176 (317)
+|++++++.+||||++++||+++|++.++++.+++|.|..... ..+++|+|+||||||+|+||+.+|++|++|||+|.+
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999984321 246789999999999999999999999999999999
Q ss_pred eCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102 177 NSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 177 ~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~ 251 (317)
||++..+. .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||+++|+++|++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99876321 2233457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 042102 252 GRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTP 315 (317)
Q Consensus 252 g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 315 (317)
|+|+||+||||++||++. +|||++|||++|||+||+|.++++++.+.+++||++|++|+++.|+
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999876 4999999999999999999999999999999999999999999775
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.7e-67 Score=524.22 Aligned_cols=306 Identities=29% Similarity=0.442 Sum_probs=275.8
Q ss_pred EEEEeCCCChhHHHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102 9 IVLMVCPVSNYLEQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL 87 (317)
Q Consensus 9 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 87 (317)
||++++++.+...+.|++. +++... ... .++.+.+.++++|++++++.+++++++++++|+||||+++|+|+||||+
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~ 78 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQ-TGL-SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDI 78 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeC-CCC-CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcH
Confidence 5899999888888888765 555532 212 2344566788999998877778999999999999999999999999999
Q ss_pred hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102 88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA 167 (317)
Q Consensus 88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l 167 (317)
++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+.. ..+.+|+||||||||+|.||+.+|++|
T Consensus 79 ~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~g~~l~gktvgIiG~G~IG~~vA~~l 157 (525)
T TIGR01327 79 EAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA-FMGTELYGKTLGVIGLGRIGSIVAKRA 157 (525)
T ss_pred HHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc-cCccccCCCEEEEECCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998532 357899999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102 168 EAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 168 ~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~ 243 (317)
++|||+|++||++.... .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++
T Consensus 158 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~ 237 (525)
T TIGR01327 158 KAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEA 237 (525)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHH
Confidence 99999999999863321 22333458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102 244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317 (317)
Q Consensus 244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 317 (317)
||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++.+++..+++|+.+|++|+++.+.|+
T Consensus 238 aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 311 (525)
T TIGR01327 238 ALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN 311 (525)
T ss_pred HHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence 99999999999999999999999877799999999999999999999999999999999999999999988774
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-67 Score=522.05 Aligned_cols=306 Identities=28% Similarity=0.444 Sum_probs=275.7
Q ss_pred cEEEEeCCCChhHHHHHHhc--CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcC
Q 042102 8 IIVLMVCPVSNYLEQEIEKS--FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKI 85 (317)
Q Consensus 8 ~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 85 (317)
|||++++++.+...+.|++. +++... ... .++.+.+.++++|++++++.+++++++++++|+||||+++|+|+|||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~-~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 78 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVK-TGL-DKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNV 78 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeC-CCC-CHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence 47999999888888888775 455432 112 23445667889999988777789999999999999999999999999
Q ss_pred ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHH
Q 042102 86 DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK 165 (317)
Q Consensus 86 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~ 165 (317)
|+++|+++||.|+|+|++++.+||||++++||+++|+++++++.+++|.|.+.. ..+.+|+||||||||+|.||+.+|+
T Consensus 79 d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~-~~g~~l~gktvgIiG~G~IG~~vA~ 157 (526)
T PRK13581 79 DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK-FMGVELYGKTLGIIGLGRIGSEVAK 157 (526)
T ss_pred cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC-ccccccCCCEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997532 3578899999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102 166 RAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 166 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd 241 (317)
++++|||+|++||++.... .+... .++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||
T Consensus 158 ~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 158 RAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred HHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence 9999999999999864321 12222 389999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102 242 EHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317 (317)
Q Consensus 242 ~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 317 (317)
+++|+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|.|+
T Consensus 237 e~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 312 (526)
T PRK13581 237 EAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN 312 (526)
T ss_pred HHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence 9999999999999999999999999887799999999999999999999999999999999999999999988874
No 15
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-67 Score=477.05 Aligned_cols=298 Identities=26% Similarity=0.421 Sum_probs=273.4
Q ss_pred EEEEeCCCChhHHHHHHhcC-eEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHh-cCCCceEEEECCCCCCcCC
Q 042102 9 IVLMVCPVSNYLEQEIEKSF-KVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIE-SLPKLEIVATCSVGLDKID 86 (317)
Q Consensus 9 ~vl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id 86 (317)
+||+++++.+.-.+.|++.+ ++...++.. .+ ++.+.++++|++++++.+++++++|+ ...+||+|+++++|+||+|
T Consensus 8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~~-~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLDQACIEILKDNGYQVEFKKNLS-LE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccchHHHHHHHhcCceEEEeccCC-HH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 79999999999999999986 565544433 33 56677899999999999999999999 5568999999999999999
Q ss_pred hhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHH
Q 042102 87 LARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKR 166 (317)
Q Consensus 87 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~ 166 (317)
++++.++||.|.|+|.+|+.++||+++++++++.|++++....+++|.|.+..+ +|.+++|||+||+|+|+||+.+|++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~-~G~el~GKTLgvlG~GrIGseVA~r 164 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKY-LGWELRGKTLGVLGLGRIGSEVAVR 164 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecce-eeeEEeccEEEEeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999996543 7899999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCC-Cc--cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102 167 AEAFDCIIGYNSRTEKPNL-NY--KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 167 l~~~G~~V~~~~~~~~~~~-~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~ 243 (317)
++++||+|++||+...... .. ....+++|+++.||+|++|+|++|+|++++|.+.|++||+|..+||++||.+||++
T Consensus 165 ~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 165 AKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred HHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 9999999999987543321 11 13578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEeeCCCCCCCCC---cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCC
Q 042102 244 ELVSALLQGRLGGAGLDVFEHEPDVP---EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK 309 (317)
Q Consensus 244 aL~~al~~g~i~ga~lDV~~~EP~~~---~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g 309 (317)
+|+++|++|+++||++|||+.||+.. +.|.++|||+.|||+|++|.|++.+++..+++++..|.+|
T Consensus 245 ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 245 ALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred HHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999874 5899999999999999999999999999999999999998
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-65 Score=483.64 Aligned_cols=308 Identities=19% Similarity=0.304 Sum_probs=266.0
Q ss_pred cEEEEeCCCC--hhH-HHHHHhc-CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCC--CceEEEECCCC
Q 042102 8 IIVLMVCPVS--NYL-EQEIEKS-FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLP--KLEIVATCSVG 81 (317)
Q Consensus 8 ~~vl~~~~~~--~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~--~Lk~i~~~~~G 81 (317)
|||++..... ..+ .+.+++. +++... ..+..++. .+.+.++|+++++...++++++++++| +||+|++.|+|
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 79 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS-KELLSSAT-VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc-CCCCCHHH-HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence 7777776432 223 3344443 333331 22223343 567899999988766789999999998 89999999999
Q ss_pred CCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHH
Q 042102 82 LDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGT 161 (317)
Q Consensus 82 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~ 161 (317)
+|+||+++|+++||.|+|+|++++++||||+++++|+++|+++++++.+++|.|.+.....+++|+|++|||||+|.||+
T Consensus 80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~ 159 (330)
T PRK12480 80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA 159 (330)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997643222346799999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCCCc-cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102 162 AIAKRAEAFDCIIGYNSRTEKPNLNY-KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240 (317)
Q Consensus 162 ~~a~~l~~~G~~V~~~~~~~~~~~~~-~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v 240 (317)
.+|++|++||++|.+||+++...... ....++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.+|
T Consensus 160 ~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~v 239 (330)
T PRK12480 160 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI 239 (330)
T ss_pred HHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcccc
Confidence 99999999999999999876543222 23458999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCceEEEeeCCCCCCCC----------C----cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHH
Q 042102 241 DEHELVSALLQGRLGGAGLDVFEHEPDV----------P----EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAH 306 (317)
Q Consensus 241 d~~aL~~al~~g~i~ga~lDV~~~EP~~----------~----~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~ 306 (317)
|+++|+++|++|+|+||+||||++||+. + +|||++|||++|||+|++|.++++++.+.+++|+.+|
T Consensus 240 d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~ 319 (330)
T PRK12480 240 NTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSV 319 (330)
T ss_pred CHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999952 1 2699999999999999999999999999999999999
Q ss_pred HCCCCCCCCCC
Q 042102 307 FGKKPLLTPVV 317 (317)
Q Consensus 307 ~~g~~~~~~v~ 317 (317)
++|++..++|+
T Consensus 320 ~~~~~~~~~~~ 330 (330)
T PRK12480 320 INTGTCETRLN 330 (330)
T ss_pred HhCCCCcccCC
Confidence 99999999886
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=5.3e-65 Score=480.36 Aligned_cols=311 Identities=19% Similarity=0.252 Sum_probs=273.4
Q ss_pred CCcEEEEeCCCChhHHHHHHhcCeEEE-ecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCC--ceEEEECCCCC
Q 042102 6 NNIIVLMVCPVSNYLEQEIEKSFKVFK-LWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPK--LEIVATCSVGL 82 (317)
Q Consensus 6 ~~~~vl~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~ 82 (317)
+|++|+++.+......+.+.+.+.+.. .+.....++. .+.+.++|+++++..+++++++++++|+ ||+|+++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~ 80 (332)
T PRK08605 2 TKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGF 80 (332)
T ss_pred cEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEccccc
Confidence 678999999887778888776665542 2221223343 3567899999888778999999999997 99999999999
Q ss_pred CcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHH
Q 042102 83 DKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTA 162 (317)
Q Consensus 83 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~ 162 (317)
||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+.....+++|+|++|||||+|.||+.
T Consensus 81 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (332)
T PRK08605 81 DTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLA 160 (332)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987532222478999999999999999999
Q ss_pred HHHHH-hhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102 163 IAKRA-EAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239 (317)
Q Consensus 163 ~a~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~ 239 (317)
+|++| ++||++|++||++..... ......++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.+
T Consensus 161 vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 161 VAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred HHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcc
Confidence 99999 789999999998764321 122345899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHhCCceEEEeeCCCCCCC--CCc------------ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHH
Q 042102 240 VDEHELVSALLQGRLGGAGLDVFEHEPD--VPE------------ELIGLENVVLLPHVASATVETRKAMADLVVGNLQA 305 (317)
Q Consensus 240 vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~------------~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~ 305 (317)
+|+++|+++|++|+|+||+||||+.||+ +.+ +||++|||++|||+||+|.++++++...+++|+.+
T Consensus 241 vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~ 320 (332)
T PRK08605 241 VDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLE 320 (332)
T ss_pred cCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999983 221 49999999999999999999999999999999999
Q ss_pred HHCCCCCCCCCC
Q 042102 306 HFGKKPLLTPVV 317 (317)
Q Consensus 306 ~~~g~~~~~~v~ 317 (317)
|++|++..++||
T Consensus 321 ~~~g~~~~~~~~ 332 (332)
T PRK08605 321 VLQTGTTRLRVN 332 (332)
T ss_pred HHcCCCCCCCcC
Confidence 999999999886
No 18
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=1.6e-61 Score=452.31 Aligned_cols=293 Identities=22% Similarity=0.315 Sum_probs=247.5
Q ss_pred cEEEEeCCC-Chh-HHHHHHhcCeEEEe--cCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCC
Q 042102 8 IIVLMVCPV-SNY-LEQEIEKSFKVFKL--WHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLD 83 (317)
Q Consensus 8 ~~vl~~~~~-~~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d 83 (317)
|.+++..+. ... +.+.|++.++-..+ +...+ ..++|+++++.. +.+.++ .|+||||++.|+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--------~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d 68 (312)
T PRK15469 1 MDIIFYHPTFDTQWWIEALRKALPQARVRAWKSGD--------NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVD 68 (312)
T ss_pred CEEEEeCCccCHHHHHHHHHHHCCCCeEEecCCCC--------CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccc
Confidence 366777654 333 66777765442221 21111 367888887642 457776 589999999999999
Q ss_pred cCChhh-----HhhCCcEEEeCCC-CCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecC
Q 042102 84 KIDLAR-----CKEKGIRVANTPD-VLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMG 157 (317)
Q Consensus 84 ~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G 157 (317)
++|.+. +.++||.|+|+++ .++.+||||++++||+++|++.++.+.+++|.|... ...+++|+||||||+|
T Consensus 69 ~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---~~~~l~g~tvgIvG~G 145 (312)
T PRK15469 69 SILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---PEYHREDFTIGILGAG 145 (312)
T ss_pred hhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC---CCCCcCCCEEEEECCC
Confidence 998322 4458999999864 689999999999999999999999999999999742 2457999999999999
Q ss_pred hhHHHHHHHHhhCCCEEEEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102 158 RIGTAIAKRAEAFDCIIGYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI 234 (317)
Q Consensus 158 ~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~ 234 (317)
.||+.+|++|++|||+|.+|+++.+...+. ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+
T Consensus 146 ~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 225 (312)
T PRK15469 146 VLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNL 225 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence 999999999999999999999876543222 12458999999999999999999999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCCC
Q 042102 235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLL 313 (317)
Q Consensus 235 ~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 313 (317)
|||++||+++|+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.+. ++...+.+|+++|++|+++.
T Consensus 226 aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~ 303 (312)
T PRK15469 226 ARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVC 303 (312)
T ss_pred CCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999876 4899999999999999999874 68899999999999999999
Q ss_pred CCCC
Q 042102 314 TPVV 317 (317)
Q Consensus 314 ~~v~ 317 (317)
|.|+
T Consensus 304 ~~V~ 307 (312)
T PRK15469 304 GQVD 307 (312)
T ss_pred ccCC
Confidence 9874
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3e-61 Score=458.08 Aligned_cols=275 Identities=23% Similarity=0.318 Sum_probs=241.6
Q ss_pred cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102 8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL 87 (317)
Q Consensus 8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 87 (317)
||||+.+.. +...+.+++.+++.+....+... +.+.++|++++++.+++++++++ .|+||+|+++++|+||||+
T Consensus 1 mkIl~d~~~-~~~~~~~~~~~ev~~~~~~~~~~----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~ 74 (378)
T PRK15438 1 MKILVDENM-PYARELFSRLGEVKAVPGRPIPV----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE 74 (378)
T ss_pred CEEEEeCCc-chHHHHHhhcCcEEEeCCCCCCH----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence 578888765 46656666666776543222122 23678999999888899999996 6999999999999999999
Q ss_pred hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102 88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA 167 (317)
Q Consensus 88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l 167 (317)
++++++||.|+|+||+|+.+||||+++++|++.|+. +.+|+|+||||||+|+||+.+|++|
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------------------g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------------------GFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-------------------CCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999998862 2469999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChh----hhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102 168 EAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 168 ~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~gavlVN~~rg~~vd~~ 243 (317)
++|||+|++||+............++++++++||+|++|+|+|++ |+|+|+++.|++||+|++|||+|||++||++
T Consensus 136 ~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~ 215 (378)
T PRK15438 136 EALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNT 215 (378)
T ss_pred HHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHH
Confidence 999999999997543221112356899999999999999999996 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHC
Q 042102 244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG 308 (317)
Q Consensus 244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~ 308 (317)
||+++|++|++.||+||||++||.++.+||..++ ++|||+||+|.++..++..++++|+.+|+.
T Consensus 216 AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 216 ALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999987778988776 999999999999999999999999999994
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-61 Score=446.14 Aligned_cols=283 Identities=26% Similarity=0.355 Sum_probs=244.1
Q ss_pred cEEEEeCCCChhHHHHHHhc---CeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCc
Q 042102 8 IIVLMVCPVSNYLEQEIEKS---FKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDK 84 (317)
Q Consensus 8 ~~vl~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 84 (317)
|++++..++.+.+.+.+.+. ++++. .+ ...++|++++... +..+++||||+++|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~ 62 (303)
T PRK06436 1 MNVYVNFPMSKKLLEICRDILDLDDVHW---YP--------DYYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDH 62 (303)
T ss_pred CeEEEEccCCHHHHHHHHhhcccceeEe---cc--------ccCCCCEEEecCC-------cCCCCCeEEEEECCcccCc
Confidence 45677788888888876553 33332 11 1356777755432 2345899999999999999
Q ss_pred CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHH
Q 042102 85 IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164 (317)
Q Consensus 85 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a 164 (317)
||+++|+++||.++|. |.++.+||||++++||+++|+++++++.+++|.|... .+.+|+|+||||||+|.||+.+|
T Consensus 63 id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---~~~~L~gktvgIiG~G~IG~~vA 138 (303)
T PRK06436 63 IDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---PTKLLYNKSLGILGYGGIGRRVA 138 (303)
T ss_pred ccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC---CCCCCCCCEEEEECcCHHHHHHH
Confidence 9999999988887775 7899999999999999999999999999999999842 35789999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCCCcc-ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102 165 KRAEAFDCIIGYNSRTEKPNLNYK-YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 165 ~~l~~~G~~V~~~~~~~~~~~~~~-~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~ 243 (317)
+++++|||+|++|+++.... +.. ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++
T Consensus 139 ~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 139 LLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred HHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHH
Confidence 99999999999999875432 222 2568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCC-CccHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q 042102 244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVA-SATVETRKAMADLVVGNLQAHFGKKPLLTPV 316 (317)
Q Consensus 244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a-~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 316 (317)
+|+++|++|++.||+||||++||++++. .+|||++|||++ +.|.++++++...+++|+.+|++|++ .|.|
T Consensus 218 aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V 288 (303)
T PRK06436 218 DMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIV 288 (303)
T ss_pred HHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceE
Confidence 9999999999999999999999986654 789999999986 58899999999999999999999987 5655
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-60 Score=454.29 Aligned_cols=278 Identities=22% Similarity=0.373 Sum_probs=243.7
Q ss_pred cEEEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCCh
Q 042102 8 IIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDL 87 (317)
Q Consensus 8 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 87 (317)
|||++.+.+ |...+.+++..++..... . +...+.+.++|++++++.+++++++++. |+||||+++++|+||||+
T Consensus 1 mkI~~d~~~-p~~~~~~~~~~~v~~~~~-~---~~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~ 74 (381)
T PRK00257 1 MKIVADENI-PLLDAFFAGFGEIRRLPG-R---AFDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDL 74 (381)
T ss_pred CEEEEecCc-hhHHHHHhhCCcEEEcCC-c---ccCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCH
Confidence 688888876 444455555455554321 1 1223346889999888888999999984 899999999999999999
Q ss_pred hhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH
Q 042102 88 ARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA 167 (317)
Q Consensus 88 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l 167 (317)
++++++||.|+|+||+|+.+||||+++++|++.|+. +.++.|+||||||+|+||+.+|+++
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-------------------g~~l~gktvGIIG~G~IG~~va~~l 135 (381)
T PRK00257 75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-------------------GVDLAERTYGVVGAGHVGGRLVRVL 135 (381)
T ss_pred HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-------------------CCCcCcCEEEEECCCHHHHHHHHHH
Confidence 999999999999999999999999999999998751 3579999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCCh----hhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102 168 EAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTE----ETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 168 ~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~----~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~ 243 (317)
++|||+|++||+......+.....++++++++||+|++|+|+|+ +|+++|+++.|++||+|++|||+|||++||++
T Consensus 136 ~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~ 215 (381)
T PRK00257 136 RGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQ 215 (381)
T ss_pred HHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 99999999999854332222345689999999999999999999 59999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102 244 ELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP 311 (317)
Q Consensus 244 aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 311 (317)
||+++|++|++.+|+||||++||.++++||+. |+++|||+||+|.++..++..++.+|+.+|+++.+
T Consensus 216 AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 216 ALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred HHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999877789986 99999999999999999999999999999999875
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.2e-60 Score=442.41 Aligned_cols=268 Identities=49% Similarity=0.839 Sum_probs=244.8
Q ss_pred ceEEEEeCCCCCCHHHHhcC-CCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHH
Q 042102 50 IQAVVGSAAAGADAELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR 128 (317)
Q Consensus 50 ~~~ii~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~ 128 (317)
..++.+......+.+.+... |+||+|+++|+|+||||+++|++|||+|+|+|+.+.++|||++++++|.++|++..+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~ 141 (336)
T KOG0069|consen 62 RIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNE 141 (336)
T ss_pred eeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34444444566778887765 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCc-cCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-c---cccCCHHHhcccCCEE
Q 042102 129 YVRSGEWK-KGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-Y---KYYPNLIDLASNCQIL 203 (317)
Q Consensus 129 ~~~~~~w~-~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-~---~~~~~l~el~~~aDvV 203 (317)
.+++|.|. ...++.+..+.||||||+|+|+||+.+|++|++||+.+.|++|++..... . ....++++++++||+|
T Consensus 142 ~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~i 221 (336)
T KOG0069|consen 142 MVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVI 221 (336)
T ss_pred hhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEE
Confidence 99999994 23345688999999999999999999999999999889999987664322 1 2245899999999999
Q ss_pred EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEccc
Q 042102 204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPH 283 (317)
Q Consensus 204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH 283 (317)
++|||+|++|+|+||++.|.+||+|+++||++||.++|+++++++|++|+|.+++||||++||.++++|+.++|+++|||
T Consensus 222 vv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PH 301 (336)
T KOG0069|consen 222 VVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPH 301 (336)
T ss_pred EEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999977789999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 042102 284 VASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317 (317)
Q Consensus 284 ~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 317 (317)
+|+.|.+.+++|+..++.|+.+++.|+++.+++.
T Consensus 302 igs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 302 IGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 9999999999999999999999999999988763
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.2e-48 Score=336.85 Aligned_cols=173 Identities=41% Similarity=0.631 Sum_probs=152.0
Q ss_pred HHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Ccc
Q 042102 113 IGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NYK 188 (317)
Q Consensus 113 l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~~ 188 (317)
+++||++.|+++++++.++++.|.......+++++|+||||||+|.||+.+|+++++|||+|++|+++..... ...
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 5899999999999999999999932223457899999999999999999999999999999999999886532 112
Q ss_pred ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC
Q 042102 189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV 268 (317)
Q Consensus 189 ~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~ 268 (317)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc-ccCCCCceEEcccCC
Q 042102 269 PE-ELIGLENVVLLPHVA 285 (317)
Q Consensus 269 ~~-~L~~~pnvi~tPH~a 285 (317)
++ |||++|||++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 76 999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=4.5e-33 Score=256.17 Aligned_cols=259 Identities=25% Similarity=0.372 Sum_probs=229.4
Q ss_pred cCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHH
Q 042102 47 KDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126 (317)
Q Consensus 47 ~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~ 126 (317)
+.++-+-..+.+..++++.+++++.||++.+.+.|+|++|+.+|.+.||.|||.|+...+.+|+-+++.||.++|+....
T Consensus 71 Lneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~ 150 (435)
T KOG0067|consen 71 LNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL 150 (435)
T ss_pred HHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence 33344455666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccCcccc------cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC----CCCccccCCHHHh
Q 042102 127 DRYVRSGEWKKGEFKM------TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP----NLNYKYYPNLIDL 196 (317)
Q Consensus 127 ~~~~~~~~w~~~~~~~------~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~el 196 (317)
.+..++|.|.....+. ....+|.++|++|+|..|+.++.++++||+.|+.||+.... ..+.....+++++
T Consensus 151 cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~ 230 (435)
T KOG0067|consen 151 CQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDL 230 (435)
T ss_pred hhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchh
Confidence 9999999886322111 34678999999999999999999999999999999987543 2344556679999
Q ss_pred cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCcccCC
Q 042102 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD--VPEELIG 274 (317)
Q Consensus 197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~~L~~ 274 (317)
+.++|.+++||.+++.+.++|+...+++|+.|+.++|++||.++|+++|.++|+.|++.+++ |. .-.||.+
T Consensus 231 ~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d 303 (435)
T KOG0067|consen 231 LYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKD 303 (435)
T ss_pred hhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999887 22 2248999
Q ss_pred CCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCCC
Q 042102 275 LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPL 312 (317)
Q Consensus 275 ~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~ 312 (317)
.||.++|||.++++..+..++.+..+..+++-..|.-+
T Consensus 304 ~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip 341 (435)
T KOG0067|consen 304 APNLICTPHTAWYSEAASVELREVAALEIRRAITGRIP 341 (435)
T ss_pred CCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 99999999999999999999999999999888777654
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.91 E-value=3.2e-23 Score=170.94 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=86.1
Q ss_pred EEEeCCCChhHHHHHHhcCeEEEecCCCChHHHHhhccCCceEEEEeCCCCCCHHHHhcCCCceEEEECCCCCCcCChhh
Q 042102 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLAR 89 (317)
Q Consensus 10 vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~ 89 (317)
||+++++.++.++.|++.+++.... ...++.+.+.++++|++++++.+++++++++.+|+||||++.|+|+|+||+++
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~--~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 78 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCD--SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEA 78 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEES--SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeC--CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHH
Confidence 7999999999999999967666543 22455566778999999997777799999999999999999999999999999
Q ss_pred HhhCCcEEEeCCCCCcHHHHHHH
Q 042102 90 CKEKGIRVANTPDVLTDDVADLA 112 (317)
Q Consensus 90 ~~~~gI~v~n~~~~~~~~vAE~a 112 (317)
|+++||.|+|+||+++.+||||+
T Consensus 79 a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 79 AKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HhhCeEEEEEeCCcCCcchhccc
Confidence 99999999999999999999999
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=2.2e-21 Score=188.27 Aligned_cols=167 Identities=20% Similarity=0.290 Sum_probs=135.7
Q ss_pred ECCCCCCcC-ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEe
Q 042102 77 TCSVGLDKI-DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILG 155 (317)
Q Consensus 77 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG 155 (317)
-+++|+..+ .+......+|+|+|+++++..+++|+++++++++...+ +|.+ +..+.|++|+|+|
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~---------~~~LaGKtVgVIG 261 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT---------DVMIAGKTVVVCG 261 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc---------CCCcCCCEEEEEC
Confidence 457787765 22333446899999999999999999999999987333 3333 3469999999999
Q ss_pred cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102 156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV 230 (317)
Q Consensus 156 ~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav 230 (317)
+|.||+.+|+++++||++|+++++++... .++ ...++++++++||+|++|. .+.++|+++.|+.||+|++
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAi 336 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAI 336 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcE
Confidence 99999999999999999999997664332 122 2457999999999999985 3788999999999999999
Q ss_pred EEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc
Q 042102 231 LINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE 270 (317)
Q Consensus 231 lVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~ 270 (317)
+||+||+ |++.+.++|+++. ++|+++.||....
T Consensus 337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~ 369 (476)
T PTZ00075 337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDR 369 (476)
T ss_pred EEEcCCC---chHHhHHHHHhcC----CceeecccCCCCe
Confidence 9999999 7888889988654 6899999996543
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=1.9e-20 Score=173.60 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=139.8
Q ss_pred ccCCceEEEEeC----------------CCCCCHHHHhcCCCceEEEECCCCCCcCChh-hHhhCCcEEE------eCCC
Q 042102 46 HKDSIQAVVGSA----------------AAGADAELIESLPKLEIVATCSVGLDKIDLA-RCKEKGIRVA------NTPD 102 (317)
Q Consensus 46 ~~~~~~~ii~~~----------------~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~ 102 (317)
.++++|+++.+- ...+++++++.+| .++...+|+++.|++ +|+++||.|+ |++.
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 357788877642 2236788999888 377888999999998 9999999999 9999
Q ss_pred CCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 103 VLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 103 ~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
+|+.++||.++.+++.. .+.+++|++++|+|+|.||+.+|+.|+++|++|.+++|+..
T Consensus 128 ~n~~~~Ae~ai~~al~~----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEH----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EccHhHHHHHHHHHHHh----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999999999877743 12368999999999999999999999999999999999764
Q ss_pred CC-----CCcc--ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc-ccCHHHHHHHHHhCCc
Q 042102 183 PN-----LNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL-LVDEHELVSALLQGRL 254 (317)
Q Consensus 183 ~~-----~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~-~vd~~aL~~al~~g~i 254 (317)
.. .+.. ...++.++++++|+|++++|.. +++++.++.||+++++||++..+ -+|. ++.++..+
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~ 256 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGI 256 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCC
Confidence 32 1111 2345788899999999999953 67889999999999999998743 2443 44455555
Q ss_pred e
Q 042102 255 G 255 (317)
Q Consensus 255 ~ 255 (317)
.
T Consensus 257 ~ 257 (287)
T TIGR02853 257 K 257 (287)
T ss_pred E
Confidence 5
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.64 E-value=5.7e-15 Score=137.65 Aligned_cols=200 Identities=15% Similarity=0.207 Sum_probs=143.0
Q ss_pred cEEEEeCCCCh--hHHHHHHh-cCeEEEec-CCCC-------hHHHHhhccCCceEEEEeCC----------------CC
Q 042102 8 IIVLMVCPVSN--YLEQEIEK-SFKVFKLW-HFED-------KEQFINTHKDSIQAVVGSAA----------------AG 60 (317)
Q Consensus 8 ~~vl~~~~~~~--~~~~~l~~-~~~~~~~~-~~~~-------~~~~~~~~~~~~~~ii~~~~----------------~~ 60 (317)
.++.+.....- +..+.|.+ .+++.... +..+ ......+.+.++|+++..-. ..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~ 82 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLV 82 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCc
Confidence 34555554333 34455654 57776421 1110 01112344678898886411 12
Q ss_pred CCHHHHhcCCCceEEEECCCCCCcCChhhHhhCCcEEEeCCCC------CcHHHHHHHHHHHHHHhhchhHHHHHHHcCC
Q 042102 61 ADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDV------LTDDVADLAIGLILAVLRRICESDRYVRSGE 134 (317)
Q Consensus 61 ~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~ 134 (317)
++++.++.+|++..+. .|.+.++++ +.|.++||.+.+..+. ++.++||.++.+.+..
T Consensus 83 ~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~--------------- 145 (296)
T PRK08306 83 LTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEH--------------- 145 (296)
T ss_pred chHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHh---------------
Confidence 4688999999997554 588889988 7899999999997764 8889999977654321
Q ss_pred CccCcccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEec
Q 042102 135 WKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 135 w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~l 207 (317)
.+.+++|++++|+|+|.+|+.+++.|+.+|++|.++++++... .+.. ...++.+.++++|+|+.++
T Consensus 146 -------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 146 -------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred -------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC
Confidence 1235789999999999999999999999999999999886432 1222 2246778899999999998
Q ss_pred cCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 208 SLTEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 208 p~~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
|. .+++++.++.|++++++||++.
T Consensus 219 p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 219 PA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred Ch-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 83 4678999999999999999975
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.61 E-value=9.5e-16 Score=148.85 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=100.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
.+.|++|+|+|+|.||+.+|+++++||++|+++++++... .++. ..+++++++.+|+|+.+ ..+++++++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 4789999999999999999999999999999998876432 1222 34788999999999873 347889999
Q ss_pred HHHhccCCCcEEEEeCC-CcccCHHHHHHH--HHhCCceEEEeeCCCCCC
Q 042102 220 QVINALGPKGVLINIGR-GLLVDEHELVSA--LLQGRLGGAGLDVFEHEP 266 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~r-g~~vd~~aL~~a--l~~g~i~ga~lDV~~~EP 266 (317)
+.|+.||+|++++|+|| +..||+++|.++ ++.+.++ +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 679999999998 9999998 9999998854
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.52 E-value=4.5e-14 Score=135.98 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=98.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
.+.|++|+|+|+|.||+.+|++++++|++|+++++.+... .++ ...+++++++.+|+|+.+.. +.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 4789999999999999999999999999999998765432 122 23467889999999987644 6788999
Q ss_pred HHHhccCCCcEEEEeCCCcc-cCHHHHHHHHHhCCceEEEeeCCCC
Q 042102 220 QVINALGPKGVLINIGRGLL-VDEHELVSALLQGRLGGAGLDVFEH 264 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~-vd~~aL~~al~~g~i~ga~lDV~~~ 264 (317)
+.|..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999998887777789998874
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.49 E-value=6.3e-14 Score=130.19 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=75.0
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
..|+|+||||||+|.||+++|++|+++|++|+++++..... .+.. ..++++++++||+|++++|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 46999999999999999999999999999999887653321 1232 35899999999999999997 67799999
Q ss_pred HHHHhccCCCcEEEE
Q 042102 219 RQVINALGPKGVLIN 233 (317)
Q Consensus 219 ~~~l~~mk~gavlVN 233 (317)
++.++.||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998754
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.46 E-value=2.3e-13 Score=125.06 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=100.2
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~ 220 (317)
++|||||+|.||..||++|...|+.|.+|||++.+. .+.....+..|+.+.+|+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 479999999999999999999999999999997762 3555677889999999999999999999999874 57
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
.++.+|+|+++||+++.+......+.+.++++.+. .+|.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 89999999999999999999999999999999987 6773
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.44 E-value=1.5e-13 Score=117.13 Aligned_cols=111 Identities=14% Similarity=0.273 Sum_probs=89.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc-HHHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN-RQVI 222 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~-~~~l 222 (317)
++|||||+|.||+.+|++|...|++|.+||+++++. .+.....++.|++++||+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999886542 3455678999999999999999999998888763 2378
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
+.+++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999988876 6664
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.37 E-value=1.9e-12 Score=125.53 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=110.8
Q ss_pred EECCCCCCcC-ChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEE
Q 042102 76 ATCSVGLDKI-DLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGIL 154 (317)
Q Consensus 76 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIi 154 (317)
=-+++|+..+ ......+.+++|.|++..+..+.-|...+.- .+.|..-.......+.|++|+|+
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai~rat~~~l~Gk~VlVi 218 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGIKRATNVLIAGKVVVVA 218 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHHHHHhccCCCCCCEEEEE
Confidence 3467788775 3333345789999999988877554332222 22232000001234789999999
Q ss_pred ecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102 155 GMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229 (317)
Q Consensus 155 G~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 229 (317)
|+|.||+.+|++++++|++|+++++++... .++. ..+++++++.+|+|+.+.. +.++|+.+.|..||+|+
T Consensus 219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~Ga 293 (425)
T PRK05476 219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGA 293 (425)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999876442 1222 3468899999999988753 56789999999999999
Q ss_pred EEEEeCCCcc-cCHHHHHH
Q 042102 230 VLINIGRGLL-VDEHELVS 247 (317)
Q Consensus 230 vlVN~~rg~~-vd~~aL~~ 247 (317)
+++|+|+... +|.++|.+
T Consensus 294 iliNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 294 ILANIGHFDNEIDVAALEE 312 (425)
T ss_pred EEEEcCCCCCccChHHHhh
Confidence 9999999876 78777754
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.27 E-value=9.5e-12 Score=105.00 Aligned_cols=99 Identities=17% Similarity=0.303 Sum_probs=71.6
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
..+.||++.|+|||.+|+.+|+.|+++|++|.+++..+... .++. ..+++++++++|+++.+.. ..+++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence 46899999999999999999999999999999999876432 2333 3579999999999888855 457889
Q ss_pred HHHHhccCCCcEEEEeCCCcc-cCHHHHHH
Q 042102 219 RQVINALGPKGVLINIGRGLL-VDEHELVS 247 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~-vd~~aL~~ 247 (317)
.+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987555 56655443
No 36
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.27 E-value=1.7e-11 Score=113.87 Aligned_cols=109 Identities=10% Similarity=0.207 Sum_probs=91.1
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc-c-HHHH
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV-N-RQVI 222 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li-~-~~~l 222 (317)
+|||||+|.||+.+|+.|...|++|.+|++++... .+.....+..+++++||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 58999999999999999999999999999986432 223345678899999999999999988887764 3 3467
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD 260 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD 260 (317)
..+++|.++||+++....+.+.+.+.++++.+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 788999999999999998889999999987665 455
No 37
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.26 E-value=2.8e-11 Score=113.05 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=92.6
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhccc---CCEEEEeccCChhhhccccHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASN---CQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~li~~~ 220 (317)
++|||||+|.||+.+|++|...|.+|.+||+++... .+.....++++++++ +|+|++++|..+.++.++ .+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence 379999999999999999999999999999876432 233445688888776 699999999988888877 46
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD 260 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD 260 (317)
.+..+++|.++||+++....+...+.+.+.+..+. .+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 77889999999999999999999999999888775 577
No 38
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.26 E-value=2e-11 Score=113.60 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=90.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV 221 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~ 221 (317)
++|||||+|.||+.+|+.+...|++|.+||+++... .+.....++++++++||+|++++|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999876432 2233456789999999999999999888887763 346
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
++.+++|.++||+++..+...+++.+.+.+..+.
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 7789999999999999988888999999887665
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.25 E-value=2.9e-11 Score=112.82 Aligned_cols=111 Identities=10% Similarity=0.174 Sum_probs=94.2
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQV 221 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~ 221 (317)
++|||||+|.||..+|+.|...|++|.+||+++... .+.....+..+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 379999999999999999999999999999976542 2333456888999999999999999887777663 346
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
+..+++|.++||++++.+...+.+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7788999999999999999999999999998877 5664
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.19 E-value=1e-10 Score=109.36 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=92.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhccc---CCEEEEeccCChhhhccccHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASN---CQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~li~~~ 220 (317)
++|||||+|.||+.+|++|...|.+|.+||+++... .+.....+++++++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 379999999999999999999999999999986432 233445678888775 699999999987777776 46
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
.+..+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999998887 5674
No 41
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.15 E-value=1.3e-10 Score=114.87 Aligned_cols=116 Identities=13% Similarity=0.165 Sum_probs=96.7
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------Ccc---ccCCHHHhccc---CCEEEEeccCChhhh
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYK---YYPNLIDLASN---CQILVVACSLTEETQ 214 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~el~~~---aDvV~~~lp~~~~t~ 214 (317)
+|||||+|.||+.||++|...|++|.+|||++.+.. +.. ...+++|+++. +|+|++|+|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999999999999865321 221 35678888775 999999999999999
Q ss_pred ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 042102 215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP 266 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP 266 (317)
.++ ...++.+++|.++||+|....-+...+.+.+++..+.....=|...++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 888 568889999999999999999999999999999988843333444433
No 42
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.10 E-value=3.1e-10 Score=105.72 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=91.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcccCCEEEEeccCChhhhccccH--HHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR--QVI 222 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~--~~l 222 (317)
++|||||+|.||+.++++|...|++|.+|++++... .+.....+..+++++||+|++++|..++++.++.. ..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 379999999999999999999999999998865321 23334567889999999999999998888876632 356
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
+.+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 778999999999999988888999999888765 6674
No 43
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.09 E-value=2.9e-10 Score=106.95 Aligned_cols=91 Identities=15% Similarity=0.214 Sum_probs=74.0
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
..++|++|||||+|+||+++|+.|+.+|++|.++++..... .+.. ..+..+++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 45899999999999999999999999999998776543221 1222 34889999999999999997765 6777
Q ss_pred cHHHHhccCCCcEEEEeCCC
Q 042102 218 NRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg 237 (317)
+++.+..|++|+++ -.+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 77888899999988 66666
No 44
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.05 E-value=7.5e-10 Score=107.24 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=80.6
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
..+.|++|+|+|+|.||+.+++.++++|++|+++++++... .++ ...++++.++.+|+|+.+.. +.++++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 35789999999999999999999999999999998775432 222 22356788899999988754 456788
Q ss_pred HHHHhccCCCcEEEEeCCCcc-cCHHHHHH
Q 042102 219 RQVINALGPKGVLINIGRGLL-VDEHELVS 247 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~-vd~~aL~~ 247 (317)
...+..||+|++++|+|++.+ +|...|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777654
No 45
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.05 E-value=5.7e-10 Score=101.83 Aligned_cols=114 Identities=11% Similarity=0.187 Sum_probs=97.0
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN-- 218 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~-- 218 (317)
-+.++||+||+|.||..|+..|-..|++|++|||+..+. .+.....++.|+.+.||+|+.++|.....+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 357899999999999999999999999999999987654 3555678999999999999999999999888763
Q ss_pred HHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 219 RQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 219 ~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
...|+..++|... |+.+.-+.--...|.++++..... .+|-
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 4467888888877 899988877778899999988776 5663
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.03 E-value=1.1e-09 Score=107.99 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=94.1
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-----C--ccccCCHHHhcc---cCCEEEEeccCChhhh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-----N--YKYYPNLIDLAS---NCQILVVACSLTEETQ 214 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-----~--~~~~~~l~el~~---~aDvV~~~lp~~~~t~ 214 (317)
.+|||||+|.||+.+|++|...|++|.+|||++... . + .....+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 379999999999999999999999999999986541 0 2 123568888876 5899999999999999
Q ss_pred ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 215 HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
.++ ++.+..+++|.++||++.+..-|...+.+.+.+..+. .+|+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 888 4677889999999999999999999999999999988 5553
No 47
>PLN02858 fructose-bisphosphate aldolase
Probab=99.02 E-value=9.9e-10 Score=120.41 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=97.7
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc--cH
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV--NR 219 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li--~~ 219 (317)
..++|||||+|.||..||++|...|+.|.+||+++.+. .+.....++.|+.++||+|++|+|..++++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 35689999999999999999999999999999986543 344567899999999999999999999999876 35
Q ss_pred HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCC--ceEEEeeC
Q 042102 220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGR--LGGAGLDV 261 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~--i~ga~lDV 261 (317)
..++.+++|.++|++|+..+-....+.+.+.+.. +. .+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6788899999999999999999999999998877 54 6774
No 48
>PLN02256 arogenate dehydrogenase
Probab=99.02 E-value=3.7e-09 Score=98.93 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=89.7
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhc-ccCCEEEEeccCChhhhccccHH
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
-++++|||||+|.||+.+++.++..|.+|.+++++.... .+.....++++++ ..+|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 367899999999999999999999999999998875321 1233345777776 4799999999964 566666443
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHV 284 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~ 284 (317)
....+++++++++++...-+..+++.+.+..+. . .+=....-+... ...+...+++++|+.
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~-~--~V~~HPmaG~e~~~~~~~~~~~~~~~~~ 174 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF-D--ILCTHPMFGPESGKGGWAGLPFVYDKVR 174 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC-e--EEecCCCCCCCCCccccCCCeEEEecce
Confidence 256689999999999966555556665553321 1 111122211111 134555667777653
No 49
>PLN02712 arogenate dehydrogenase
Probab=99.02 E-value=7.5e-10 Score=113.63 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=83.2
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhcc-cCCEEEEeccCChhhhccc
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLAS-NCQILVVACSLTEETQHIV 217 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~li 217 (317)
++++.+++|||||+|.||+.+|+.++.+|++|.+|+++.... .+.....++++++. .+|+|++|+|. ..+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 456789999999999999999999999999999999874321 22333467888775 59999999995 5677777
Q ss_pred cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102 218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~ 251 (317)
.+-....||+|++++|++.+.-...+.+.+.+..
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 6655557999999999999875444555555443
No 50
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.00 E-value=2.2e-09 Score=100.32 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=88.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHh---cccCCEEEEeccCChhhhccccHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDL---ASNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
++|||||+|.||..+|+.|...|.+|.+|||++... .+.....+++++ +.++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 479999999999999999999999999999986532 122223455554 46789999999988 777777 46
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
....+++|.++||++.+...+...+.+.+++..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 77888999999999999888999999999887776 5664
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=98.96 E-value=1.9e-09 Score=118.30 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccc--cHH
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIV--NRQ 220 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li--~~~ 220 (317)
.++|||||+|.||..||++|...|++|.+||+++... .+.....+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 4789999999999999999999999999999876542 233345788999999999999999999998887 345
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHh--CCceEEEeeC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQ--GRLGGAGLDV 261 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~--g~i~ga~lDV 261 (317)
.++.+++|.++||++...+-..+.+.+.+.+ ..+. .+|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 7888999999999999998888899999988 5555 5664
No 52
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.92 E-value=2.8e-09 Score=98.99 Aligned_cols=107 Identities=8% Similarity=0.049 Sum_probs=87.3
Q ss_pred EEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc--HHHHhcc
Q 042102 153 ILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN--RQVINAL 225 (317)
Q Consensus 153 IiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~--~~~l~~m 225 (317)
|||+|.||..+|+.|...|.+|.+|++++... .+.....++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999876532 2333456889999999999999998887777662 4566788
Q ss_pred CCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 226 k~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
++|.++||++...+-....+.+.+++..+. .+|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999987776777888888877665 5773
No 53
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.90 E-value=1.1e-08 Score=95.22 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=74.9
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C------------ccccCCHHHhcccC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N------------YKYYPNLIDLASNC 200 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~el~~~a 200 (317)
++|||||+|.||..+|..+...|++|.+||+++.... + .....+..+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 5899999999999999999999999999998764311 0 01122223568999
Q ss_pred CEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHH
Q 042102 201 QILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALL 250 (317)
Q Consensus 201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~ 250 (317)
|+|+.++|.+++.+..+-++..+.++++++|+ |+|.-. ...+.+.+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 99999999999988777677777799999987 676653 445555554
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.89 E-value=6.2e-09 Score=102.79 Aligned_cols=109 Identities=11% Similarity=0.176 Sum_probs=89.8
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C---C--ccccCCHHHhc---ccCCEEEEeccCChhhhcc
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L---N--YKYYPNLIDLA---SNCQILVVACSLTEETQHI 216 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~---~--~~~~~~l~el~---~~aDvV~~~lp~~~~t~~l 216 (317)
.|||||+|.||+.+|++|...|++|.+|+|++... . + .....+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999976532 1 1 22345677765 5799999999998888888
Q ss_pred ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
+ .+.+..+++|.++||++....-|...+.+.+.+..+. .+|.
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 7 4677889999999999999988988999999888887 5554
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.86 E-value=2.1e-08 Score=98.48 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=90.9
Q ss_pred CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
++|+||| +|.||+.+|+.|+..|.+|.++++++... .+.....+..+.+.+||+|++++|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799998 89999999999999999999999875431 12233457788899999999999964 345555 456
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC--CCcccCCCCceEEcccC
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD--VPEELIGLENVVLLPHV 284 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~--~~~~L~~~pnvi~tPH~ 284 (317)
...+++++++++++.......+++.+.+..+ .. .+.. -|. +..+++.-..++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999985544445555554332 11 2222 232 22357777889999964
No 56
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.86 E-value=9.4e-09 Score=96.43 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=68.9
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh-cc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN-AL 225 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~-~m 225 (317)
.+++|||||+|.+|+.+|++|...|++|.+|+|+.. .+++++++++|+|++++|. +.++.++.. ... .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHHhcC
Confidence 467999999999999999999999999999998653 4688999999999999997 467777633 323 47
Q ss_pred CCCcEEEEeCCCcc
Q 042102 226 GPKGVLINIGRGLL 239 (317)
Q Consensus 226 k~gavlVN~~rg~~ 239 (317)
++++++|++++|-.
T Consensus 73 ~~~~ivi~~s~gi~ 86 (308)
T PRK14619 73 PPETIIVTATKGLD 86 (308)
T ss_pred CCCcEEEEeCCccc
Confidence 88999999987543
No 57
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.81 E-value=7.4e-09 Score=96.55 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=86.0
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
.+.||++.|.|||.+|+.+|.+++++|++|++....+-.. .++ ...+++++...+|+++.+.- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf-~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCc-EEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 4689999999999999999999999999999988766443 223 34579999999999998866 6789999
Q ss_pred HHHhccCCCcEEEEeCCCcc-cCHHHHHH-HHHhCCce
Q 042102 220 QVINALGPKGVLINIGRGLL-VDEHELVS-ALLQGRLG 255 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~-vd~~aL~~-al~~g~i~ 255 (317)
++|..||+|+++-|.|.-.+ +|...|.+ +++...++
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 99999999999999997666 57666653 34444444
No 58
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.80 E-value=1.9e-08 Score=98.33 Aligned_cols=131 Identities=11% Similarity=0.141 Sum_probs=89.6
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCc----------------cccCCHHHhcccCCEEEEecc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNY----------------KYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~----------------~~~~~l~el~~~aDvV~~~lp 208 (317)
++|||||+|.||..+|..+.. |++|++||+++.+. .+. ....+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 79999999876432 111 012233456899999999999
Q ss_pred CC------hhhhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC--Cce-E-EEeeCCCCCCCCCc----cc
Q 042102 209 LT------EETQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSALLQG--RLG-G-AGLDVFEHEPDVPE----EL 272 (317)
Q Consensus 209 ~~------~~t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g--~i~-g-a~lDV~~~EP~~~~----~L 272 (317)
.. ++...++ .+...+.+++|.++|+.|.-.+--.+.+.+.+.+. .+. + ...=++.+||..+. .+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 66 3334444 24566789999999999998887777654443332 222 1 11114677887653 57
Q ss_pred CCCCceEE
Q 042102 273 IGLENVVL 280 (317)
Q Consensus 273 ~~~pnvi~ 280 (317)
...|+++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 77777754
No 59
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.80 E-value=1.5e-08 Score=95.12 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=68.7
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeC-CCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS-RTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
|+|++|||||+|+||+++|+.|+.+|++|++++ +..... .+.. ..+..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 578999999999999999999999999887544 332221 1222 34688899999999999996544 334456
Q ss_pred HHHhccCCCcEEEEeCCCccc
Q 042102 220 QVINALGPKGVLINIGRGLLV 240 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~v 240 (317)
+....+++|. +|.++.|=-+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6677888886 7888887544
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.80 E-value=2.5e-08 Score=92.26 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=82.9
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-cccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
++|||||+|.||+.+|..|+..|.+|.+|++++... .+. ....+..+.+++||+|++++|.... ..++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~-~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLL-LPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHH-HHHH-HHHH
Confidence 479999999999999999999999999999875432 111 1122223568899999999995543 3333 5566
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC---CCCC-CC---cccCCCCceEEcccCC
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE---HEPD-VP---EELIGLENVVLLPHVA 285 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~---~EP~-~~---~~L~~~pnvi~tPH~a 285 (317)
..+++++++++++.-. .+ ..+++....-. .+.... .|.. .. ..|+.-.++++||+-.
T Consensus 79 ~~l~~~~ii~d~~Svk---~~-~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~ 142 (279)
T PRK07417 79 PALPPEAIVTDVGSVK---AP-IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN 142 (279)
T ss_pred HhCCCCcEEEeCcchH---HH-HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence 7789999999988744 22 23333322112 222221 1111 11 1367778899999754
No 61
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.79 E-value=5.9e-09 Score=100.81 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=73.1
Q ss_pred CCccCcccc-cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC------CCC-----CCccccCCHHHhcccCC
Q 042102 134 EWKKGEFKM-TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE------KPN-----LNYKYYPNLIDLASNCQ 201 (317)
Q Consensus 134 ~w~~~~~~~-~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~------~~~-----~~~~~~~~l~el~~~aD 201 (317)
.|.+..++. ...|+|+||+|||+|.+|+.-|..|+..|.+|.+--|.. ... .++ ...+++|++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCC
Confidence 466555533 357999999999999999988888888888776332221 111 222 3467999999999
Q ss_pred EEEEeccCChhhhccccHHHHhccCCCcEEE
Q 042102 202 ILVVACSLTEETQHIVNRQVINALGPKGVLI 232 (317)
Q Consensus 202 vV~~~lp~~~~t~~li~~~~l~~mk~gavlV 232 (317)
+|++.+|++. ++.+.++.++.||+|+.|.
T Consensus 100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence 9999999993 6777799999999999864
No 62
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.78 E-value=5.5e-08 Score=90.30 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=79.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC-----------------------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN-----------------------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~-----------------------------~~~~~~l~el~~~ 199 (317)
++|+|||+|.||..+|..+...|++|.+||+++..... .....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 47999999999999999999999999999987543100 1124567889999
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVF 262 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~ 262 (317)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+ ..+.+.++ ..-+..++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~-~~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTK-RPERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CcccEEEEecC
Confidence 99999999988776655445566778999876 78877443 45555553 22223455555
No 63
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.76 E-value=3.5e-08 Score=91.58 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=68.1
Q ss_pred cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||+|+|||.| .||+.+|.+|...|++|.++++.. .++.++.++||+|+++++.. +++.+..
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~----~~v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRP----RLIDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCCh----hcccHhh
Confidence 457999999999996 999999999999999999997643 27899999999999999855 3565554
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+|+|+++||+|--.
T Consensus 221 ---ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LKPGAVVIDVGINR 234 (301)
T ss_pred ---ccCCcEEEEecccc
Confidence 79999999998654
No 64
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.74 E-value=1.3e-07 Score=90.75 Aligned_cols=136 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCc--cccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNY--KYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
++|+|||+|.||+++|+.|+..|..|.++++++... .+. ....++++++++||+|++++|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 479999999999999999999998887777654422 111 12346788899999999999974 4566653
Q ss_pred HHHh-ccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC----------cccCCCCceEEcccCCCcc
Q 042102 220 QVIN-ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP----------EELIGLENVVLLPHVASAT 288 (317)
Q Consensus 220 ~~l~-~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~----------~~L~~~pnvi~tPH~a~~t 288 (317)
+... .+++++++++++.-..--.+.+.+.+ ..... .++.+ |... ..|+.....++||+-. .+
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~-~~ 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH-TD 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC-CC
Confidence 3333 47899999999876543333333321 12222 34432 3221 1477777889999743 33
Q ss_pred HHHHH
Q 042102 289 VETRK 293 (317)
Q Consensus 289 ~~~~~ 293 (317)
.+..+
T Consensus 152 ~~~~~ 156 (359)
T PRK06545 152 PDAVA 156 (359)
T ss_pred HHHHH
Confidence 44433
No 65
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.73 E-value=9.8e-08 Score=89.43 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCc--cccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNY--KYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
.++|+|||+|.||+.+++.++..|. +|.++++++... .+. ....++++.+++||+|++++|... +..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH-
Confidence 4689999999999999999998885 899999875421 111 123567788899999999999643 23333
Q ss_pred HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC---CC---CCCC-cccCCCCceEEcccCCCccHHH
Q 042102 219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE---HE---PDVP-EELIGLENVVLLPHVASATVET 291 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~---~E---P~~~-~~L~~~pnvi~tPH~a~~t~~~ 291 (317)
++....++++.++++++....--.+++.+.+. ..+. .+..+. .| |... .+|+.-.+++++|+-+ .+.+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~-~~~~~ 159 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEG-TDPAA 159 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCC-CCHHH
Confidence 44556789999999987644222222322222 1222 333322 12 1111 2577777899999754 34444
Q ss_pred HH
Q 042102 292 RK 293 (317)
Q Consensus 292 ~~ 293 (317)
.+
T Consensus 160 ~~ 161 (307)
T PRK07502 160 VA 161 (307)
T ss_pred HH
Confidence 43
No 66
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.71 E-value=1.4e-07 Score=92.18 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=74.9
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----C--ccccCCHHHh---------------cccCCEEEEec
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----N--YKYYPNLIDL---------------ASNCQILVVAC 207 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~--~~~~~~l~el---------------~~~aDvV~~~l 207 (317)
++|+|||+|.||..+|..|+..|.+|++||+++.... + ......++++ ++.||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 6899999999999999999999999999998765321 0 0112234443 34799999999
Q ss_pred cCC------hhhhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 208 SLT------EETQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 208 p~~------~~t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
|.. ++...+. -+...+.+++|+++|+.|.-.+--.+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 964 1212221 24566778999999999997777777777666653
No 67
>PLN02712 arogenate dehydrogenase
Probab=98.70 E-value=3.1e-08 Score=101.85 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=72.0
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhc-ccCCEEEEeccCChhhhccccH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~ 219 (317)
.-+.++|||||+|.||+.+|+.++.+|++|.+++++.... .+.....++++++ .+||+|++|+|. ..+..++.+
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 3455799999999999999999999999999998864321 2333455777865 569999999995 467777765
Q ss_pred HHHhccCCCcEEEEeCCCc
Q 042102 220 QVINALGPKGVLINIGRGL 238 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~ 238 (317)
-.+..+++|++++|+++-.
T Consensus 128 l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred hhhhcCCCCeEEEECCCCc
Confidence 4446789999999997544
No 68
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.70 E-value=2.1e-07 Score=85.20 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=73.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC----EEEEe-CCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYN-SRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~-~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
++|||||+|.||+++++.|...|. +|+++ +|++... .+.....+..+++++||+|++++| .+....++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999998887 88888 8765432 233345678888999999999996 45566666
Q ss_pred HHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 219 RQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
.+....++++.++|++.-| +..+.+.+.+.
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 3455667889999988665 46666665553
No 69
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.70 E-value=2e-08 Score=84.58 Aligned_cols=89 Identities=13% Similarity=0.264 Sum_probs=62.9
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
|+||+|+|||||..|++-|.+|+..|.+|.+-.+...+. .++ ...+..|++++||+|++.+|...+ ..+..+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf-~v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF-EVMSVAEAVKKADVVMLLLPDEVQ-PEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--ECCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC-eeccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence 679999999999999999999999999998776654421 222 346899999999999999996544 335567
Q ss_pred HHHhccCCCcEEEEeCCC
Q 042102 220 QVINALGPKGVLINIGRG 237 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg 237 (317)
+....||+|+.++ .+.|
T Consensus 80 ~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHHS-TT-EEE-ESSS
T ss_pred HHHhhCCCCCEEE-eCCc
Confidence 7888999999865 4444
No 70
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.67 E-value=2.4e-08 Score=96.06 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=72.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc------ccCCHHHhcccCCEEEEeccCC-h
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK------YYPNLIDLASNCQILVVACSLT-E 211 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~------~~~~l~el~~~aDvV~~~lp~~-~ 211 (317)
.+.+.+|.|+|+|.+|+.+++.++.+|++|.++|++.... .+.. ...++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 3678899999999999999999999999999999865321 1110 1134677889999999998653 2
Q ss_pred hhhccccHHHHhccCCCcEEEEeC
Q 042102 212 ETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 212 ~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345688999999999999999997
No 71
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.66 E-value=7e-07 Score=85.63 Aligned_cols=121 Identities=13% Similarity=0.201 Sum_probs=82.5
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhh-CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH-
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEA-FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI- 222 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l- 222 (317)
+...+|+|||+ |.||+.+|+.++. +|.+|+++|+... ...++++.+++||+|++|+|.... ..++. +..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~~~-~~~l~-~l~~ 73 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIRHT-AALIE-EYVA 73 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHHHH-HHHHH-HHhh
Confidence 34579999999 9999999999985 5889999998521 234678889999999999996543 33442 222
Q ss_pred --hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC-C--cccCCCCceEEccc
Q 042102 223 --NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV-P--EELIGLENVVLLPH 283 (317)
Q Consensus 223 --~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~-~--~~L~~~pnvi~tPH 283 (317)
..+++|+++++++.-.- ...+++..... ++...-|.. + ..+++.-++++||.
T Consensus 74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 34799999999987442 22222222211 223334432 1 25777788999996
No 72
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.66 E-value=2.8e-07 Score=85.62 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=90.1
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------------------------------CccccCCHHHhcc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------------------------------NYKYYPNLIDLAS 198 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~el~~ 198 (317)
++|+|||.|.||..+|..+...|.+|..+|++++... ......++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998753210 0112467888899
Q ss_pred cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCce
Q 042102 199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENV 278 (317)
Q Consensus 199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnv 278 (317)
.||+|+.++|...+...-+-++..+.++++++++..+++ .....+.+.+.... +..++-. ..|.+..|.+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCeE
Confidence 999999999977655444445566678889988543333 34455666554222 2223221 2345677888
Q ss_pred EEcccCCCccHHHHHHH
Q 042102 279 VLLPHVASATVETRKAM 295 (317)
Q Consensus 279 i~tPH~a~~t~~~~~~~ 295 (317)
.+.|+-. .+.+..+++
T Consensus 154 evv~~~~-t~~~~~~~~ 169 (287)
T PRK08293 154 EIMGHPG-TDPEVFDTV 169 (287)
T ss_pred EEeCCCC-CCHHHHHHH
Confidence 8988744 344444443
No 73
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.66 E-value=2.9e-08 Score=76.60 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=61.9
Q ss_pred eEEEEecChhHHHHHHHHhhCC---CEEE-EeCCCCCCC------CCccccC-CHHHhcccCCEEEEeccCChhhhcccc
Q 042102 150 SVGILGMGRIGTAIAKRAEAFD---CIIG-YNSRTEKPN------LNYKYYP-NLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G---~~V~-~~~~~~~~~------~~~~~~~-~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
||||||+|+||+.+++.+...| .+|. +++|+++.. .+..... +..+++++||+|++++|...- ..+ -
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~-~~v-~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQL-PEV-L 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGH-HHH-H
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHH-HHH-H
Confidence 6999999999999999999999 8998 558876543 1222233 789999999999999995432 223 2
Q ss_pred HHHHhccCCCcEEEEeCCC
Q 042102 219 RQVINALGPKGVLINIGRG 237 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg 237 (317)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 566789999998654
No 74
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.66 E-value=4.8e-07 Score=85.28 Aligned_cols=100 Identities=11% Similarity=0.151 Sum_probs=78.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------C----C-----ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------L----N-----YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~----~-----~~~~~~l~el~~~aDvV 203 (317)
++|||||.|.||..+|..+...|++|..||++++.. . + .....+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 589999999999999999999999999999875421 0 0 12345788999999999
Q ss_pred EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
+-++|.+.+.+.-+-++..+.++++++| .++..+ ....++.+.+.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcC
Confidence 9999999998887778888889999954 444443 35556666664
No 75
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.65 E-value=6e-07 Score=86.54 Aligned_cols=81 Identities=14% Similarity=0.262 Sum_probs=66.4
Q ss_pred cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc
Q 042102 147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225 (317)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m 225 (317)
..++|+||| +|.||+.+|+.|+..|..|.+|++.. ..+.++++++||+|++|+|.... ..++ ++... +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~--------~~~~~~~~~~aDlVilavP~~~~-~~~~-~~l~~-l 165 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD--------WDRAEDILADAGMVIVSVPIHLT-EEVI-ARLPP-L 165 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc--------chhHHHHHhcCCEEEEeCcHHHH-HHHH-HHHhC-C
Confidence 447999999 99999999999999999999999753 13577889999999999997753 4455 33444 8
Q ss_pred CCCcEEEEeCCCc
Q 042102 226 GPKGVLINIGRGL 238 (317)
Q Consensus 226 k~gavlVN~~rg~ 238 (317)
++|+++++++.-.
T Consensus 166 ~~~~iv~Dv~SvK 178 (374)
T PRK11199 166 PEDCILVDLTSVK 178 (374)
T ss_pred CCCcEEEECCCcc
Confidence 9999999997754
No 76
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.61 E-value=3.6e-07 Score=89.16 Aligned_cols=132 Identities=11% Similarity=0.143 Sum_probs=86.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------------------CC-ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------------------LN-YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------------------~~-~~~~~~l~el~~~aDvV 203 (317)
++|||||+|.||..+|..|...|.+|++||+++... .+ .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 479999999999999999999999999999865421 01 12335678889999999
Q ss_pred EEeccCChhh------hccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHH-HhC-CceEEEeeC---CCCCCCCCc
Q 042102 204 VVACSLTEET------QHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSAL-LQG-RLGGAGLDV---FEHEPDVPE 270 (317)
Q Consensus 204 ~~~lp~~~~t------~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al-~~g-~i~ga~lDV---~~~EP~~~~ 270 (317)
++|+|..... ..+. .+...+.+++|.++|+.|.-.+=-.+.+.+.+ ++. .+. .+.|. +.+|...+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G 159 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREG 159 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCC
Confidence 9999965431 1121 13455678999999999865554555665444 431 111 12332 234443332
Q ss_pred ----ccCCCCceEEc
Q 042102 271 ----ELIGLENVVLL 281 (317)
Q Consensus 271 ----~L~~~pnvi~t 281 (317)
.++..+.+++.
T Consensus 160 ~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 160 NAVHDLLNPDRIVGG 174 (411)
T ss_pred ChhhhhcCCCEEEEe
Confidence 35667777766
No 77
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.61 E-value=4.2e-07 Score=84.01 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=85.5
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEe--CCCCCCC-----CCcc--ccCC-HHHhcccCCEEEEeccCChhhhccc
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYN--SRTEKPN-----LNYK--YYPN-LIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~--~~~~~~~-----~~~~--~~~~-l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
.++|+|+|+|.||+.+|+.++..|..+.++ |++.... .+.. ...+ ..+.+..+|+|++++|-.. |..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH
Confidence 368999999999999999999999977544 4443221 1211 1123 3677888999999999664 34444
Q ss_pred cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC----CcccCCCCceEEcccCC
Q 042102 218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV----PEELIGLENVVLLPHVA 285 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~----~~~L~~~pnvi~tPH~a 285 (317)
++.-..+|+|+++++++.-.---.++..+.+.+.. .+...-|.. ..+++..-.+++||.-.
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCC
Confidence 45555899999999998755433334444433321 122333431 23788888999999643
No 78
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=3.6e-07 Score=85.00 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=72.2
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|+|||.|.||..+|..+...|.+|.+||++++... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5899999999999999999999999999998753210 1 11234554 5789
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHH
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALL 250 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~ 250 (317)
||+|+.++|...+.+..+-++..+.++++++++ |++.-. ...+.+.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~ 132 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD 132 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence 999999999887755544456667789999998 655543 345666653
No 79
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.59 E-value=2.4e-06 Score=84.84 Aligned_cols=211 Identities=15% Similarity=0.207 Sum_probs=123.8
Q ss_pred CCChhHHHHHHh-cCeEEEecCCCC-----hHHHHh--------hccCCceEEEEeCCCCCCHHHHhcCC-CceEEEECC
Q 042102 15 PVSNYLEQEIEK-SFKVFKLWHFED-----KEQFIN--------THKDSIQAVVGSAAAGADAELIESLP-KLEIVATCS 79 (317)
Q Consensus 15 ~~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~ii~~~~~~~~~~~l~~~~-~Lk~i~~~~ 79 (317)
++.|+..++|.+ .|++..-..... ++++.+ +.+.++|+|+-- . +.+.+.++.+. +--+|+...
T Consensus 16 AltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV-~-~P~~~e~~~l~~g~tli~~l~ 93 (511)
T TIGR00561 16 AATPKTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKV-N-APSDAEIAELPAGKALVSFIW 93 (511)
T ss_pred ccCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEe-C-CCCHHHHHhcCCCCEEEEEcC
Confidence 356777777755 577764332111 233322 111246766531 2 23445566654 556677766
Q ss_pred CCCCcCChhhHhhCCcEEEeCCCCC--c--------HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCC
Q 042102 80 VGLDKIDLARCKEKGIRVANTPDVL--T--------DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGK 149 (317)
Q Consensus 80 ~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~ 149 (317)
...|.=-++++.+++|++..-.-.. + .++|+.+ .+|-+.+..+.. |.+..+.......+.+.
T Consensus 94 p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA------Gy~Avi~Aa~~l--gr~~~g~~taag~vp~a 165 (511)
T TIGR00561 94 PAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA------GYRAIIEAAHEF--GRFFTGQITAAGKVPPA 165 (511)
T ss_pred ccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH------HHHHHHHHHHHh--hhhcCCceecCCCCCCC
Confidence 6665545688899999988733111 1 2233322 233332222221 11111100111245678
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----------------cCC----------HHHhc
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----------------YPN----------LIDLA 197 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----------------~~~----------l~el~ 197 (317)
++.|+|+|.+|...++.++.+|++|.+++++.... .+... ..+ +.+.+
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~ 245 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA 245 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988765321 11110 001 44567
Q ss_pred ccCCEEEEec--cCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 198 SNCQILVVAC--SLTEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 198 ~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+++|+|+.++ |..+. ..++.++.++.||+|+++||++-
T Consensus 246 ~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 246 KEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEeee
Confidence 8899998876 44332 35889999999999999999964
No 80
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.59 E-value=2e-07 Score=79.89 Aligned_cols=89 Identities=22% Similarity=0.349 Sum_probs=74.1
Q ss_pred ccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.++.|+++.|||.|.+ |..+++.|...|++|.+.+|+. .++.+.++++|+|+++.+.. ++|.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~----~ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP----GLVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC----ceecHHH-
Confidence 3689999999999996 8889999999999998888753 46888999999999998843 3688875
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
++++.++||+|...-+| ..++++.
T Consensus 106 --~~~~~viIDla~prdvd-------~~~~~~~ 129 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD-------KSGGKLV 129 (168)
T ss_pred --ccCCeEEEEccCCCccc-------ccCCCee
Confidence 57899999999988777 4455554
No 81
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.59 E-value=5.1e-07 Score=83.28 Aligned_cols=127 Identities=15% Similarity=0.237 Sum_probs=80.6
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CCcc-ccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LNYK-YYPNLIDLASNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~~~-~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
++|+|||+|.||+.+|+.|+..|. +|.++++++... .+.. ...+..++. +||+|++++|.... ..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHH-HH
Confidence 379999999999999999998775 788999875431 1221 234666765 49999999996553 3334 34
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCC---C---CCCCc-ccCCCCceEEcccC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEH---E---PDVPE-ELIGLENVVLLPHV 284 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~---E---P~~~~-~L~~~pnvi~tPH~ 284 (317)
..+ +++++++++++.- -..+.+.+.+.. .+..++..+. | |.... .+++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 555 8899999997552 234555554321 1123444433 1 21111 36666668888853
No 82
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=2.3e-07 Score=85.62 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=69.3
Q ss_pred cccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.|+++.|||.|.+ |+.++..|...|++|+++... ..++.+.+++||+|+++++ +.++|+.+
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~~- 218 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTAD- 218 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCHH-
Confidence 34799999999999999 999999999999999886532 2468899999999999999 56788874
Q ss_pred HhccCCCcEEEEeCCCcc
Q 042102 222 INALGPKGVLINIGRGLL 239 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~ 239 (317)
.+|+|+++||+|.-.+
T Consensus 219 --~ik~gavVIDVGin~~ 234 (285)
T PRK14189 219 --MVKPGATVIDVGMNRD 234 (285)
T ss_pred --HcCCCCEEEEcccccc
Confidence 4799999999997553
No 83
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.56 E-value=7.9e-07 Score=82.30 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=72.1
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|+|||.|.||..+|..+...|.+|.++|+++.... + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 4799999999999999999999999999997654220 0 01133454 4799
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
||+|+.++|.+.+.+.-+-++..+.++++++++....| +....+.+.+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~ 131 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK 131 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence 99999999977776644445566678999988544444 55567777774
No 84
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=2.4e-07 Score=86.07 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=66.7
Q ss_pred ccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeC-CCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 144 TKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNS-RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 144 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
.++.||+|+||| .|.+|+.+|.+|...|+.|.+|+ ++. ++++++++||+|+++++... ++.+..
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~ 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence 368999999999 99999999999999999999995 542 57899999999999999654 455443
Q ss_pred HhccCCCcEEEEeCCCcc
Q 042102 222 INALGPKGVLINIGRGLL 239 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~ 239 (317)
+|+|+++||+|--.+
T Consensus 220 ---lk~GavVIDvGin~~ 234 (296)
T PRK14188 220 ---IKPGATVIDVGINRI 234 (296)
T ss_pred ---ecCCCEEEEcCCccc
Confidence 899999999986543
No 85
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.55 E-value=5.3e-07 Score=79.47 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=80.7
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------CccccCCHHHhcc-cCCEEEEeccCChhhhc
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NYKYYPNLIDLAS-NCQILVVACSLTEETQH 215 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~el~~-~aDvV~~~lp~~~~t~~ 215 (317)
+.+++|++++|+|+|++|+.+|++|..+|++|+++|++..... +.. ..+.++++. +||+++.+.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----cc
Confidence 3468999999999999999999999999999999998754321 222 123455554 7999886655 36
Q ss_pred cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
+|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++..+.
T Consensus 97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 89999999997 56778888888776 5666778888886
No 86
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.54 E-value=7.4e-07 Score=89.00 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=74.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------------------------C-ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------------------------N-YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~el~~~aDvV 203 (317)
++|||||.|.||..+|..+...|++|.+||+++.... + .....++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 4899999999999999999999999999998754311 1 22356788999999999
Q ss_pred EEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102 204 VVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 204 ~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~ 251 (317)
+.++|...+.+..+-++.-+.++++++| .++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999988776654434444557777654 4444443 35566666643
No 87
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.53 E-value=1.8e-06 Score=80.32 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102 160 GTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229 (317)
Q Consensus 160 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 229 (317)
|+.||++|...|+.|.+||++.... .+.....+..+++++||+|++|+|..++++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8999999999999999998765321 244456789999999999999999998888887 56888999999
Q ss_pred EEEEeCCCcccCHHHHHHHHHh
Q 042102 230 VLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 230 vlVN~~rg~~vd~~aL~~al~~ 251 (317)
++||++. ++.+.++..++.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999966 556666666665
No 88
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.51 E-value=3.5e-07 Score=86.45 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=74.9
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C--------C------ccccCCHHHhcccCCEEEEecc
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L--------N------YKYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~--------~------~~~~~~l~el~~~aDvV~~~lp 208 (317)
.++|+|||+|.||..+|.+|...|.+|.+|+|+++.. . + .....++.++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4589999999999999999999999999999864321 0 1 1234578888899999999999
Q ss_pred CChhhhccccHHHHhccCCCcEEEEeCCC-cccC--HHHHHHHHHh
Q 042102 209 LTEETQHIVNRQVINALGPKGVLINIGRG-LLVD--EHELVSALLQ 251 (317)
Q Consensus 209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg-~~vd--~~aL~~al~~ 251 (317)
... + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 663 2 5566888999999999997 3332 4456666654
No 89
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.51 E-value=5.1e-07 Score=75.58 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=78.0
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCC------Cc----cccCCHHHhcccCCEEEEeccCChh-
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL------NY----KYYPNLIDLASNCQILVVACSLTEE- 212 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~el~~~aDvV~~~lp~~~~- 212 (317)
.+.+++++|+|.|.||+.+++.+...| .+|.+++++..... .. ....+..++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 366889999999999999999999886 68999998754321 11 1245677788999999999998764
Q ss_pred hhc-cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 213 TQH-IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 213 t~~-li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
... .+.. ..++++.+++|++..+.. . .+.+.+++..+.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc
Confidence 222 2333 236899999999876433 3 787888777654
No 90
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.51 E-value=4.4e-07 Score=83.71 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=66.8
Q ss_pred cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||+++|||. |.+|+.+|.+|...|++|.++... ..++.+.+++||+|+++++.. +++....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~----~~v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRG----HFVTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcc----ccCCHHH
Confidence 44799999999999 999999999999999999988321 136899999999999999944 4566654
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+|+|+++||+|--.
T Consensus 220 ---ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ---VKEGAVVIDVGMNR 233 (284)
T ss_pred ---ccCCcEEEEeccee
Confidence 79999999998554
No 91
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.50 E-value=1.3e-06 Score=81.97 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=83.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~~ 199 (317)
++|+|||.|.||..+|..+...|.+|.+||+++... .+ .....++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999875311 11 1234678889999
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceE
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVV 279 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi 279 (317)
||+|+.++|...+....+-++ ++.+.++..+|..+... .....+.+.+..... ...|-+-+ |. +-.|=+.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~-~~~~~la~~~~~~~~--~~~~hp~~-p~-----~~~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA-LLASAFTEHLAGRER--CLVAHPIN-PP-----YLIPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC-CCHHHHHHhcCCccc--EEEEecCC-Cc-----ccCceEE
Confidence 999999999876544333233 34443444444433333 345567777754332 23443332 21 1112356
Q ss_pred EcccCCCccHHHHHH
Q 042102 280 LLPHVASATVETRKA 294 (317)
Q Consensus 280 ~tPH~a~~t~~~~~~ 294 (317)
++|+-+ .+.+..++
T Consensus 153 iv~~~~-t~~~~~~~ 166 (308)
T PRK06129 153 VVPAPW-TAPATLAR 166 (308)
T ss_pred EeCCCC-CCHHHHHH
Confidence 888744 33444443
No 92
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1.6e-06 Score=81.36 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=69.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------C--------------ccccCCHHHhcccCCEEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------N--------------YKYYPNLIDLASNCQILV 204 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~el~~~aDvV~ 204 (317)
++|+|||.|.||..+|..+...|++|.++|++..... + .....++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999997653210 0 112356778899999999
Q ss_pred EeccCChhh-hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 205 VACSLTEET-QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 205 ~~lp~~~~t-~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
+++|...+. ..++ ++.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999987643 3333 3333346677776544334 33557777664
No 93
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=3.8e-07 Score=84.14 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=73.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC----EEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
++|||||+|+||+++++.|...|. +|++++|+.... .+.....+..+++++||+|++++|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999987774 699999876432 2233345777889999999999994 5566655
Q ss_pred HHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 219 RQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
++.-..++++.++|++.-|- +.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence 34445578889999998774 5556666664
No 94
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1.6e-06 Score=80.62 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=72.3
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------------Cc-------------cccCCHHHh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------------NY-------------KYYPNLIDL 196 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~el 196 (317)
++|+|||.|.||..+|..+...|++|.++|+++.... +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998754210 00 012234 56
Q ss_pred cccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 197 ASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 197 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
+++||+|+.++|...+...-+-++.-+.++++++|++...|- ....+.+.+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~ 134 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALE 134 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcC
Confidence 789999999999876544434344555678999998776663 4556766664
No 95
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.46 E-value=3.9e-07 Score=84.07 Aligned_cols=104 Identities=22% Similarity=0.207 Sum_probs=77.6
Q ss_pred cCCeEEEEecChhHHHHHHHHhh--CCCEEE-EeCCCCCCCC------C-ccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA--FDCIIG-YNSRTEKPNL------N-YKYYPNLIDLASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~l 216 (317)
..++|||||+|.||+.+++.+.. .++++. +++++++... + ...+.+++++++++|+|++|+|.... .
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~-- 81 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-R-- 81 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-H--
Confidence 34799999999999999999985 478875 6787654321 1 13457899999999999999996533 1
Q ss_pred ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
+-....++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 1123345667777778899888889999998887665
No 96
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=9.6e-07 Score=78.51 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=93.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHh---cccCCEEEEeccCChhhhccccHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDL---ASNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
+++|.||+|+||..++++|+.-|.+|++||+++... .+.....+++++ +...-+|-+++|...-|..+| .+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 479999999999999999999999999999987542 233345566665 566789999999887777766 45
Q ss_pred HHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 042102 221 VINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEH 264 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~ 264 (317)
.-..|.+|-++|+-+...--|....++.|++..|. .+||=.+
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence 66778999999999988888888888999999997 8898543
No 97
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.45 E-value=6.6e-07 Score=82.73 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=72.8
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCC-------CCccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPN-------LNYKYYPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~-------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.+++|||||+|+||+++++.|...| .+|.+++|+.... .+.....+..+++++||+|++++|... ...
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHH
Confidence 3579999999999999999998877 6788999865321 133345678888999999999999544 333
Q ss_pred cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
++ ......++++.++|++.-|- ..+.+.+.+.
T Consensus 81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 33 34445578899999986553 5556666554
No 98
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.45 E-value=2.3e-07 Score=84.93 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=76.1
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
.+.||.+.|.|||.+|+..|+.|++||++|++....+-.. .++ ...+++|+.++.|+++.+.- .+++|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~-~V~tm~ea~~e~difVTtTG----c~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGY-EVTTLEEAIREVDIFVTTTG----CKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhcc-EeeeHHHhhhcCCEEEEccC----CcchhhH
Confidence 4689999999999999999999999999999987655432 223 35689999999999888755 5778999
Q ss_pred HHHhccCCCcEEEEeCCCcc
Q 042102 220 QVINALGPKGVLINIGRGLL 239 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~ 239 (317)
++|.+||+++++-|+|.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999987654
No 99
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.44 E-value=1.1e-06 Score=81.60 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=72.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------Cc-------------cccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------NY-------------KYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~el~~~ 199 (317)
++|||||.|.||..+|..+...|++|..||+++.... +. ....++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 3899999999999999999999999999998765311 00 023456 55899
Q ss_pred CCEEEEeccCChhhhccccHHHHhcc-CCCcEEEEeCCCcccCHHHHHHHH
Q 042102 200 CQILVVACSLTEETQHIVNRQVINAL-GPKGVLINIGRGLLVDEHELVSAL 249 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~m-k~gavlVN~~rg~~vd~~aL~~al 249 (317)
||+|+-++|.+.+.+.-+-.+.-+.+ ++++++++.+.+-.+. .+..++
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~ 133 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAAT 133 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhc
Confidence 99999999999998876655444445 8899998876665443 344443
No 100
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.43 E-value=1.4e-06 Score=84.24 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=84.3
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-----------------Cccc--cCCHHHhcccCCEEEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-----------------NYKY--YPNLIDLASNCQILVV 205 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-----------------~~~~--~~~l~el~~~aDvV~~ 205 (317)
++|+|||+|.||..+|..++ .|++|+++|+++... . .... ..+..++++.||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 47999999999999997766 599999999875431 0 0111 2235677899999999
Q ss_pred eccCCh----------hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc----c
Q 042102 206 ACSLTE----------ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE----E 271 (317)
Q Consensus 206 ~lp~~~----------~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~----~ 271 (317)
|+|..- ..+..+ +.... +++|.++|+.|.-.+=-.+.+.+.+.+..+. +.+|...+. .
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d 151 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD 151 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence 999652 112222 23333 7999999999998877777888777654332 466665443 4
Q ss_pred cCCCCceEE
Q 042102 272 LIGLENVVL 280 (317)
Q Consensus 272 L~~~pnvi~ 280 (317)
+...|++++
T Consensus 152 ~~~p~rvv~ 160 (388)
T PRK15057 152 NLHPSRIVI 160 (388)
T ss_pred ccCCCEEEE
Confidence 666666654
No 101
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.42 E-value=1.6e-06 Score=86.68 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=81.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|||||.|.||+.||..+...|+.|.+||++++... + .....++++ ++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 5899999999999999999999999999998765311 1 122356655 569
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHh-CCceEEEeeCCCCCC
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQ-GRLGGAGLDVFEHEP 266 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~-g~i~ga~lDV~~~EP 266 (317)
||+|+-++|.+.+.+..+-++.-..+++++++ .|+|.-++ ..+..++.. .++ .++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence 99999999999998876655555567899999 59987665 356665543 233 4566665444
No 102
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.41 E-value=9.3e-07 Score=81.69 Aligned_cols=79 Identities=15% Similarity=0.313 Sum_probs=67.6
Q ss_pred ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
..+.|+++.|||.|. +|+.+|..|...|++|+++.+.. .++.+.+++||+|+++++. .++|.++.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~- 219 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV- 219 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence 469999999999999 99999999999999998887532 3688999999999999984 45788765
Q ss_pred hccCCCcEEEEeCCCc
Q 042102 223 NALGPKGVLINIGRGL 238 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~ 238 (317)
+|+|+++||+|-..
T Consensus 220 --vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 --VKEGAVIIDVGNTP 233 (286)
T ss_pred --cCCCcEEEEcCCCc
Confidence 68999999998654
No 103
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.39 E-value=6.1e-07 Score=84.29 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=68.6
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----C--------------CccccCCHHHhcccCCEEEEeccC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----L--------------NYKYYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~~l~el~~~aDvV~~~lp~ 209 (317)
++|+|||+|.||..+|..|...|.+|.+|++++... . +.....++++.++.||+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999864321 0 122345777888999999999996
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGRGLLV 240 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~v 240 (317)
..+..++ +...+.+++++++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 4555555 3455667889999999765433
No 104
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.37 E-value=3.3e-07 Score=74.85 Aligned_cols=104 Identities=18% Similarity=0.318 Sum_probs=60.4
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
...+|||||.|++|..+++.|...|+.|. +++|+.... .+.....++++++..+|++++++|++. ...+ .+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHH-HH
Confidence 34699999999999999999999999886 556765321 122334578899999999999999874 3332 23
Q ss_pred HHHhc--cCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102 220 QVINA--LGPKGVLINIGRGLLVDEHELVSALLQGRL 254 (317)
Q Consensus 220 ~~l~~--mk~gavlVN~~rg~~vd~~aL~~al~~g~i 254 (317)
+.-.. .++|.+++-|| |. ...+-|..+-+.|-+
T Consensus 87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence 33333 68999999984 22 222334444444443
No 105
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.35 E-value=1.5e-06 Score=86.86 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=81.2
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|||||.|.||+.||..+...|+.|.+||++++... + .....++++ ++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999998754311 1 112456655 579
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP 266 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP 266 (317)
||+|+.++|.+.+.+..+-.+.-+.++++++|. |+|.-++ ..+.+.+. ...+..++..|.+-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~-~p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLA-RPERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcC-cccceEEEeccCccc
Confidence 999999999988877765555556678888876 6665443 45666664 233445677666544
No 106
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.34 E-value=4.1e-06 Score=87.52 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=88.2
Q ss_pred CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
++|||||+|.||+++++.++..| .+|.++|++.... .+.. ...++.++++++|+|++++|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4799999876432 1221 2346788899999999999964 344444 3
Q ss_pred HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC----------CcccCCCCceEEcccCCC
Q 042102 220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV----------PEELIGLENVVLLPHVAS 286 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~----------~~~L~~~pnvi~tPH~a~ 286 (317)
+..+.++++.++++++.-...-.+.+.+.+....+ .+..+-|.. ...|+.-.+++++|+-..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 34455788999999987543334455555433222 223333321 125788889999997543
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.31 E-value=4.8e-07 Score=74.68 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=69.8
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
+++|+++.|||.|.+|+.++..|...|++ |.+++|+.++.. . .....++.+.+.++|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999995 999999865321 0 12345666778999999999886543
Q ss_pred hhccccHHHHhccCCCc-EEEEeCCCcccC
Q 042102 213 TQHIVNRQVINALGPKG-VLINIGRGLLVD 241 (317)
Q Consensus 213 t~~li~~~~l~~mk~ga-vlVN~~rg~~vd 241 (317)
.+.++.++..++.. ++++.+...-|+
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence 67888887765543 888887654443
No 108
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.31 E-value=5e-07 Score=80.32 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHH--hhCCCEEE-EeCCCCC
Q 042102 106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA--EAFDCIIG-YNSRTEK 182 (317)
Q Consensus 106 ~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l--~~~G~~V~-~~~~~~~ 182 (317)
...++|.+..++...|++.. |. ..++++|||+|.+|+.+++.+ ...|+++. ++|+.+.
T Consensus 61 ~~~~gy~v~~l~~~~~~~l~---------~~----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~ 121 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKILG---------LD----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE 121 (213)
T ss_pred CCCCCeeHHHHHHHHHHHhC---------CC----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence 44456888888888888751 11 235899999999999999863 46788875 5666443
Q ss_pred CCC----C--ccccCCHHHhccc--CCEEEEeccCChh---hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102 183 PNL----N--YKYYPNLIDLASN--CQILVVACSLTEE---TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 183 ~~~----~--~~~~~~l~el~~~--aDvV~~~lp~~~~---t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~ 251 (317)
... + .....++.+++++ .|.+++++|.+.. ...+.......-|...++.+|+.+|.+|+.++|..+|..
T Consensus 122 ~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 122 KIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred hcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 221 1 1123457777755 9999999998765 222333333445667788999999999999999998874
No 109
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.29 E-value=4e-06 Score=63.65 Aligned_cols=67 Identities=27% Similarity=0.351 Sum_probs=56.5
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhC-CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAF-DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
..+.+++++|+|.|.+|+.++..+... +.+|.++++ |+++.+.+. .+++.++..
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~ 73 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT 73 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence 347889999999999999999999988 568888887 999999874 345666678
Q ss_pred hccCCCcEEEEeC
Q 042102 223 NALGPKGVLINIG 235 (317)
Q Consensus 223 ~~mk~gavlVN~~ 235 (317)
..+++++++++++
T Consensus 74 ~~~~~~~~v~~~a 86 (86)
T cd05191 74 AKINEGAVVIDLA 86 (86)
T ss_pred HhcCCCCEEEecC
Confidence 8899999999874
No 110
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.29 E-value=1.7e-06 Score=78.98 Aligned_cols=98 Identities=12% Similarity=0.208 Sum_probs=71.1
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC---EEEEeCCCCCCC------C-CccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC---IIGYNSRTEKPN------L-NYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~---~V~~~~~~~~~~------~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
++|||||+|+||+.+++.|...|. .+.+++|+.... . +.....+..++++++|+|++++| ......++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 379999999999999999987775 357888865432 1 22345678888999999999999 344454443
Q ss_pred HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
. + .+++|.++|.+. .-+..+.|.+.+..+
T Consensus 80 ~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred H--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 2 257899999987 336777787777653
No 111
>PRK07680 late competence protein ComER; Validated
Probab=98.27 E-value=1.8e-06 Score=79.52 Aligned_cols=98 Identities=12% Similarity=0.236 Sum_probs=71.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC----EEEEeCCCCCCC-------CCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC----IIGYNSRTEKPN-------LNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~----~V~~~~~~~~~~-------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
++|||||+|.||+.+++.|...|. +|.+++|+.+.. .+.....+..+++.++|+|++++|.. ....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH
Confidence 379999999999999999988773 789999875432 12333467888899999999999733 344444
Q ss_pred cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 218 NRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3444567788999999855 36666766554
No 112
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.27 E-value=2.3e-06 Score=84.47 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=85.6
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCCC----------CccccCCHHHhccc---CCEEEEeccCChhhhccccHHHHhcc
Q 042102 159 IGTAIAKRAEAFDCIIGYNSRTEKPNL----------NYKYYPNLIDLASN---CQILVVACSLTEETQHIVNRQVINAL 225 (317)
Q Consensus 159 iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el~~~---aDvV~~~lp~~~~t~~li~~~~l~~m 225 (317)
||+.||++|...|++|.+|||++.+.. +.....+++++++. +|+|++++|..+.++.++ ...++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999865321 24456789988774 899999999999999988 4688899
Q ss_pred CCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC
Q 042102 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV 261 (317)
Q Consensus 226 k~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV 261 (317)
.+|.++||++....-|...+.+.+++..+. .+|.
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999998887 4553
No 113
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.25 E-value=3.9e-06 Score=73.72 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=64.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-CC------C-ccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-NL------N-YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-~~------~-~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
++++|+|.|+||..+|+++...|.+|.+-+++... .. + .....+.++..+.+|+|++++|...-.. +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~--v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD--VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh--HHHH
Confidence 58999999999999999999999999877554332 11 1 1234578899999999999999765322 3355
Q ss_pred HHhccCCCcEEEEeCCC
Q 042102 221 VINALGPKGVLINIGRG 237 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg 237 (317)
....++ |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 666666 8999998653
No 114
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.23 E-value=3.4e-05 Score=76.88 Aligned_cols=210 Identities=13% Similarity=0.225 Sum_probs=121.4
Q ss_pred CChhHHHHHHh-cCeEEEecCCCC-----hHHHHh---------hccCCceEEEEeCCCCCCHHHHhcCC-CceEEEECC
Q 042102 16 VSNYLEQEIEK-SFKVFKLWHFED-----KEQFIN---------THKDSIQAVVGSAAAGADAELIESLP-KLEIVATCS 79 (317)
Q Consensus 16 ~~~~~~~~l~~-~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~ii~~~~~~~~~~~l~~~~-~Lk~i~~~~ 79 (317)
+.|+..++|.+ .|++..-..... ++++.+ +.+ ++|+|+-- . ..+.+.++.++ .--+|+...
T Consensus 18 ltP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV-~-~P~~~e~~~l~~g~~li~~l~ 94 (509)
T PRK09424 18 ATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKV-N-APSDDEIALLREGATLVSFIW 94 (509)
T ss_pred cCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEeC
Confidence 56777777755 577765332111 333322 112 46766632 1 23455566665 455677776
Q ss_pred CCCCcCChhhHhhCCcEEEeCCCCC--c--------HHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCC
Q 042102 80 VGLDKIDLARCKEKGIRVANTPDVL--T--------DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGK 149 (317)
Q Consensus 80 ~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~ 149 (317)
...|.=-++.+.++||++..-.-.- + .++|+.+ .+|-+.+..+.. +....+.........|.
T Consensus 95 p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA------Gy~Av~~aa~~~--~~~~~g~~taaG~~pg~ 166 (509)
T PRK09424 95 PAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA------GYRAVIEAAHEF--GRFFTGQITAAGKVPPA 166 (509)
T ss_pred cccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh------HHHHHHHHHHHh--cccCCCceeccCCcCCC
Confidence 6666555688899999887722211 0 1222221 222222222221 11111100111245799
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc--c-----------------CC--------HHHhc
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY--Y-----------------PN--------LIDLA 197 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~--~-----------------~~--------l~el~ 197 (317)
+|.|+|.|.+|...+..++.+|++|.++|+++... .+... . .+ +.+.+
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 99999999999999999999999999999875431 12110 0 01 11223
Q ss_pred ccCCEEEEeccCChh-hhccccHHHHhccCCCcEEEEeCC
Q 042102 198 SNCQILVVACSLTEE-TQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 198 ~~aDvV~~~lp~~~~-t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+++|+|+.+...... ...++.++.++.||+|+++|++|-
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 579999988764321 223557899999999999999974
No 115
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.21 E-value=5.6e-06 Score=70.25 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=59.1
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|+.|..+.... .++++.+++||+|+.+.. ..++|..+.
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~~ 97 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKADW 97 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GGG
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----ccccccccc
Confidence 3469999999999995 99999999999999998876432 478999999999999987 356777654
Q ss_pred HhccCCCcEEEEeCCCcc
Q 042102 222 INALGPKGVLINIGRGLL 239 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~ 239 (317)
+|+|+++||+|.-..
T Consensus 98 ---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 98 ---IKPGAVVIDVGINYV 112 (160)
T ss_dssp ---S-TTEEEEE--CEEE
T ss_pred ---ccCCcEEEecCCccc
Confidence 599999999987665
No 116
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.19 E-value=9e-06 Score=75.20 Aligned_cols=102 Identities=15% Similarity=0.257 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCC-------C-CccccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPN-------L-NYKYYPNLIDLASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~-------~-~~~~~~~l~el~~~aDvV~~~lp~~~~t~~l 216 (317)
.+|+|||+|.||+.+++.+...| .+|.+++++.... . ......+..++++++|+|++++|.. ....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence 47999999999999999998777 5788888754221 1 1122457788899999999999933 23333
Q ss_pred ccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL 254 (317)
Q Consensus 217 i~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i 254 (317)
+ .+....++++..+|.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 3333456778899999877 666677776643333
No 117
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.19 E-value=2.5e-06 Score=72.24 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=62.6
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------C------CccccCCHHHhcccCCEEEEeccCC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------L------NYKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
+|+|+|.|+.|.++|..|...|.+|..|.++++.. . ......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999874310 1 1123468999999999999999954
Q ss_pred hhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102 211 EETQHIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
.. +.+ -++....++++..+|++..|=
T Consensus 81 ~~-~~~-~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 AH-REV-LEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp GH-HHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred HH-HHH-HHHHhhccCCCCEEEEecCCc
Confidence 32 333 345556678899999998663
No 118
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.18 E-value=1.2e-06 Score=74.94 Aligned_cols=92 Identities=16% Similarity=0.317 Sum_probs=66.4
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC-----c---------------------cccCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN-----Y---------------------KYYPN 192 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~-----~---------------------~~~~~ 192 (317)
..+...+|.|+|.|++|+..++.++++|++|..+|...... .. . .....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 45778999999999999999999999999999888654311 00 0 01124
Q ss_pred HHHhcccCCEEEEe-ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 193 LIDLASNCQILVVA-CSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 193 l~el~~~aDvV~~~-lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
+.+.++.+|+|+.+ +-..+..-.++.++.++.||+|++++|++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 67889999998864 44555667799999999999999999985
No 119
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=1.3e-05 Score=74.04 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=65.9
Q ss_pred ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.++.|+++.|||.|. +|+.++..|...|++|+++... ..++.+.+++||+|+.+++- .+++..+.
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~----p~~v~~~~- 220 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGK----PGFIPGEW- 220 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCC----cccccHHH-
Confidence 469999999999999 9999999999999999887643 23689999999999999852 24676644
Q ss_pred hccCCCcEEEEeCCCc
Q 042102 223 NALGPKGVLINIGRGL 238 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~ 238 (317)
+|+|+++||+|--.
T Consensus 221 --vk~gavVIDvGin~ 234 (285)
T PRK10792 221 --IKPGAIVIDVGINR 234 (285)
T ss_pred --cCCCcEEEEccccc
Confidence 68999999998543
No 120
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=9e-06 Score=75.07 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=67.5
Q ss_pred cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.|++|.|||-| .+|+.+|..|...|+.|.++... ..++.+.+++||+|+++++ ..+++..++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG----~p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVG----KPDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 347899999999999 99999999999999999887432 2357899999999999987 456788877
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|-..
T Consensus 219 v---k~GavVIDvGi~~ 232 (285)
T PRK14191 219 V---KKGAVVVDIGINR 232 (285)
T ss_pred c---CCCcEEEEeeccc
Confidence 5 8999999998654
No 121
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.12 E-value=1.3e-05 Score=72.03 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=98.1
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCE---EEEeCCCC----CCCC-----------Cc---cccCCHHHhcccCCE
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCI---IGYNSRTE----KPNL-----------NY---KYYPNLIDLASNCQI 202 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~---V~~~~~~~----~~~~-----------~~---~~~~~l~el~~~aDv 202 (317)
..+.++++.|+|.|.+|+.++..|...|++ |+.+||+. .... .. ....++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 357889999999999999999999999984 88999872 2110 00 011367788889999
Q ss_pred EEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCC-ceEEEeeCCCCCCCCCcccCCCCceEEc
Q 042102 203 LVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGR-LGGAGLDVFEHEPDVPEELIGLENVVLL 281 (317)
Q Consensus 203 V~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~-i~ga~lDV~~~EP~~~~~L~~~pnvi~t 281 (317)
|+.+.| .++++++.++.|+++.+++..+.. ..|.-+.++.+.|- |..-+. . --..+..|+++-
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~---~------~~~~Q~nn~~~f 164 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR---S------DFPNQVNNVLGF 164 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC---C------CCccccceeeec
Confidence 999876 477889999999999999888833 34444444444433 232221 1 124577899999
Q ss_pred ccCCCccHH-----HHHHHHHHHHHHHHHHH
Q 042102 282 PHVASATVE-----TRKAMADLVVGNLQAHF 307 (317)
Q Consensus 282 PH~a~~t~~-----~~~~~~~~~~~nl~~~~ 307 (317)
|=++-..-. .-+.|...+++.|-++.
T Consensus 165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~ 195 (226)
T cd05311 165 PGIFRGALDVRATKITEEMKLAAAEAIADLA 195 (226)
T ss_pred chhhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence 987642221 12445455555555444
No 122
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.10 E-value=3.6e-06 Score=77.58 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=71.3
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C------ccccCCHHHhcccCCEEEEe--ccCC
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N------YKYYPNLIDLASNCQILVVA--CSLT 210 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~------~~~~~~l~el~~~aDvV~~~--lp~~ 210 (317)
.+..-+|.|+|.|.+|...|+.+.++|.+|...|.+.+... + ......+++.+.++|+|+-+ +|..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 46667899999999999999999999999999988754321 1 11124588999999999876 4443
Q ss_pred hhhhccccHHHHhccCCCcEEEEeC
Q 042102 211 EETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
+ .-.++.++++++||||+++||++
T Consensus 245 k-aPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 K-APKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred C-CceehhHHHHHhcCCCcEEEEEE
Confidence 3 34578899999999999999985
No 123
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=9.2e-06 Score=74.78 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=67.6
Q ss_pred cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.|+++.|+|.+ ..|+.+|..+..+|++|..+.... .++.+.+++||+|+.+++.. +++.++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence 347999999999999 999999999999999998765432 36899999999999999632 6788887
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|-..
T Consensus 214 v---k~GavVIDVgi~~ 227 (279)
T PRK14178 214 V---KPGATVIDVGINQ 227 (279)
T ss_pred c---CCCcEEEEeeccc
Confidence 5 9999999998544
No 124
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=1.3e-05 Score=73.93 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=66.1
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.|+++.|||.|. +|+.+|..|...|++|.++... ..++.+..++||+|++++.- .+++.++
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~----p~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGV----KHLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence 3478999999999999 9999999999999999887642 23689999999999998763 3577766
Q ss_pred HhccCCCcEEEEeCCC
Q 042102 222 INALGPKGVLINIGRG 237 (317)
Q Consensus 222 l~~mk~gavlVN~~rg 237 (317)
.+|+|+++||+|--
T Consensus 225 --~vk~gavVIDvGin 238 (287)
T PRK14176 225 --MVKEGAVIFDVGIT 238 (287)
T ss_pred --HcCCCcEEEEeccc
Confidence 46899999999864
No 125
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.08 E-value=2.9e-05 Score=67.65 Aligned_cols=89 Identities=11% Similarity=0.197 Sum_probs=67.0
Q ss_pred cccccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCC------CCCcccc--CC----HHHhcccCCEEEEec
Q 042102 141 KMTTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKP------NLNYKYY--PN----LIDLASNCQILVVAC 207 (317)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~------~~~~~~~--~~----l~el~~~aDvV~~~l 207 (317)
+.+.++.||++.|||-+. +|+.+|..|...|++|+.++.+.-. ....... .+ +.+.+++||+|++++
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 346789999999999986 5899999999999999988532210 0000111 12 789999999999999
Q ss_pred cCChhhhcc-ccHHHHhccCCCcEEEEeCC
Q 042102 208 SLTEETQHI-VNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 208 p~~~~t~~l-i~~~~l~~mk~gavlVN~~r 236 (317)
+ ..++ +..+.+ |+|+++||+|-
T Consensus 135 G----~~~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 135 P----SPNYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred C----CCCCccCHHHc---CCCcEEEEcCC
Confidence 8 4466 777664 89999999984
No 126
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1.7e-05 Score=73.60 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=66.2
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.|+++.|+|.|. +|++++..|...|++|.++++. ..++.+.++++|+|+.+++ . .+++..+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG-~---~~~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVG-K---PELIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccC-C---CCcCCHHH
Confidence 3468999999999998 9999999999999999888762 2367888899999999996 2 23677655
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+|+|++++|++-..
T Consensus 221 ---lk~gavViDvg~n~ 234 (283)
T PRK14192 221 ---IKQGAVVVDAGFHP 234 (283)
T ss_pred ---cCCCCEEEEEEEee
Confidence 69999999998544
No 127
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.07 E-value=3.7e-05 Score=63.85 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=66.8
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.|+++.|+|-+. +|+.++..|...|++|..++... .++++.+++||+|+++.+.. ++|..+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 4579999999999875 68999999999999998887532 36889999999999998854 5688766
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+|||++++|++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 68999999998655
No 128
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.05 E-value=1e-05 Score=70.50 Aligned_cols=132 Identities=9% Similarity=0.094 Sum_probs=76.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------------CCC-------------ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------------NLN-------------YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------------~~~-------------~~~~~~l~el~~~aDvV 203 (317)
|+|+|+|+|.+|..+|..+...|++|+++|.+++. +.+ .....+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 58999999999999999999999999999976431 000 11345678889999999
Q ss_pred EEeccCChhhhcccc--------HHHHhccCCCcEEEEeCCCcccCHH-HHHHHHHhCCceEEEee-CCCCCCCCCc---
Q 042102 204 VVACSLTEETQHIVN--------RQVINALGPKGVLINIGRGLLVDEH-ELVSALLQGRLGGAGLD-VFEHEPDVPE--- 270 (317)
Q Consensus 204 ~~~lp~~~~t~~li~--------~~~l~~mk~gavlVN~~rg~~vd~~-aL~~al~~g~i~ga~lD-V~~~EP~~~~--- 270 (317)
++|+|-...-.+-.| +...+.++++.++|.-|.-.+=-.+ -+...|++..-...-++ +|.+|-..+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999984332232222 3455668999999999887664444 33445554332110111 1556655442
Q ss_pred -ccCCCCceEE
Q 042102 271 -ELIGLENVVL 280 (317)
Q Consensus 271 -~L~~~pnvi~ 280 (317)
.+...|++++
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 5778888875
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.03 E-value=7.3e-06 Score=80.17 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=70.1
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCC------Cc--cccCCHHHhcccCCEEEEeccCChhhhc
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL------NY--KYYPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~------~~--~~~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.+.|++|+|+|.|.||+.+++.|+..| .+|.+++|+..... +. ....++.+.+.++|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 58999998764321 11 1124567788999999999663 356
Q ss_pred cccHHHHhccC----CCcEEEEeCCCcccC
Q 042102 216 IVNRQVINALG----PKGVLINIGRGLLVD 241 (317)
Q Consensus 216 li~~~~l~~mk----~gavlVN~~rg~~vd 241 (317)
+++++.++.+. .+.+++|.+...=+|
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 78888887652 245899998644343
No 130
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.02 E-value=1.9e-05 Score=72.67 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=69.8
Q ss_pred CeEEEEecChhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
++|||||+|.||+.+++.+... ++++ .++|++.... .+...+.++++++.++|+|+.|.|..... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~-----~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVE-----E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHH-----H
Confidence 4899999999999999998765 5664 5688765421 12234578999989999999998743221 1
Q ss_pred HHHhccCCCcEEEEeCCCcccCH---HHHHHHHHhCCce
Q 042102 220 QVINALGPKGVLINIGRGLLVDE---HELVSALLQGRLG 255 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~---~aL~~al~~g~i~ 255 (317)
-....++.|.-++..+.|.+.|. +.|.++.+++...
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 12234556666677888887764 4666666666544
No 131
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.97 E-value=4.7e-05 Score=69.73 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
++|||||+|+||++++.-|..-| .+|++.+|+.+... +.....+.+++..++|+|++++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999888 47999998875432 12225677899999999999977 32 22
Q ss_pred HHHHhccC---CCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 219 RQVINALG---PKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 219 ~~~l~~mk---~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
++.++.++ ++.++|.++-| |..+.|.+.+.+.++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vv 113 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVV 113 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceE
Confidence 55666666 68999999877 4556777777644443
No 132
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.97 E-value=1.7e-05 Score=72.89 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=66.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
-|.||||+|||||.-|++=|..|+..|.+|++=-|..... .++ ...+.+|++++||+|.+.+|...+.. +..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf-~V~~v~ea~k~ADvim~L~PDe~q~~-vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGF-KVYTVEEAAKRADVVMILLPDEQQKE-VYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCC-EeecHHHHhhcCCEEEEeCchhhHHH-HHH
Confidence 5899999999999999999999999999986544433221 222 35689999999999999999765533 556
Q ss_pred HHHHhccCCCcEE
Q 042102 219 RQVINALGPKGVL 231 (317)
Q Consensus 219 ~~~l~~mk~gavl 231 (317)
++.-..||+|+.+
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 6777788988854
No 133
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.00025 Score=67.57 Aligned_cols=153 Identities=13% Similarity=0.198 Sum_probs=114.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHh---cccCCEEEEeccCChhhhc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDL---ASNCQILVVACSLTEETQH 215 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~ 215 (317)
..+|+||+|.||+.+|......|++|.+|+|+..+. .....+.+++|+ ++.-.-|++++-....+..
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 469999999999999999999999999999987542 112234566665 6777888888776533344
Q ss_pred cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHH
Q 042102 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAM 295 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~ 295 (317)
+| +..+..|.+|-++|+-|...--|...-.++|.+..|...+.-|-..|-..-. =| -+ +-|.+.++++++
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GP--Si---MpGG~~eay~~v 153 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GP--SI---MPGGQKEAYELV 153 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CC--Cc---CCCCCHHHHHHH
Confidence 44 5678889999999999999999999999999999999999999887753211 11 12 237788998888
Q ss_pred HHHHHHHHHHHHCCCCC
Q 042102 296 ADLVVGNLQAHFGKKPL 312 (317)
Q Consensus 296 ~~~~~~nl~~~~~g~~~ 312 (317)
.. +++.|.+-..|+|=
T Consensus 154 ~p-il~~IaAk~~g~pC 169 (473)
T COG0362 154 AP-ILTKIAAKVDGEPC 169 (473)
T ss_pred HH-HHHHHHhhcCCCCc
Confidence 66 44555555556653
No 134
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=5.2e-05 Score=69.99 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=66.8
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|+.+... ..++.+..++||+|++++. ..+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG----~~~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------TKDLPQVAKEADILVVATG----LAKFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 4579999999999986 6999999999999999877532 1368999999999999988 446788776
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|--.
T Consensus 219 v---k~GavVIDvGin~ 232 (284)
T PRK14170 219 I---KPGAIVIDVGMDR 232 (284)
T ss_pred c---CCCCEEEEccCcc
Confidence 4 8999999998655
No 135
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.96 E-value=3.5e-05 Score=73.38 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=70.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCC----------CCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102 160 GTAIAKRAEAFDCIIGYNSRTEKP----------NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229 (317)
Q Consensus 160 G~~~a~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 229 (317)
|..+|.+|...|.+|.+||++... ..+.....+..+++++||+|++++|....++.++ ......+++|+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 889999999999999999987641 1233345678888999999999999766577776 46777889999
Q ss_pred EEEEeCCCcccCH-HHHHHHHH
Q 042102 230 VLINIGRGLLVDE-HELVSALL 250 (317)
Q Consensus 230 vlVN~~rg~~vd~-~aL~~al~ 250 (317)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999876655 55666664
No 136
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.95 E-value=1.8e-05 Score=72.41 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=66.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCC---CEEEEeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD---CIIGYNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G---~~V~~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
++|+|||+|.||+.+++.+...| .+|.+++|+.+.. .+.....+.++++.++|+|++++|... .+.++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-MEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-HHHHH-H
Confidence 58999999999999999998888 6889999875432 122334577888899999999998432 33333 2
Q ss_pred HHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 220 QVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
.....+ +.++|++.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 222223 46788886654 5566666554
No 137
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.95 E-value=3.7e-05 Score=70.41 Aligned_cols=97 Identities=27% Similarity=0.443 Sum_probs=64.1
Q ss_pred CCeEEEEecChhHHHHHHHHhhCC----CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFD----CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN 223 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~ 223 (317)
.++|||||+|+||+++++.+..-| -++.+++++.... +.....+..+++.+||+|++++|.. .+..++. +...
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavkp~-~~~~vl~-~i~~ 79 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVKPD-LAGKVLL-EIKP 79 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeCHH-HHHHHHH-HHHh
Confidence 468999999999999999998765 2488888765432 2233456778889999999998833 3444443 3333
Q ss_pred ccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 224 ALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 224 ~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
.++++ .+|.+.-| +..+.+.+.+.
T Consensus 80 ~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 80 YLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred hccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 44544 45665544 33555555543
No 138
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=3.7e-05 Score=70.84 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=66.7
Q ss_pred cccccCCeEEEEecC-hhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMG-RIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-| .+|+.+|.+|...|++|..+... ..++.+..++||+|++++. ..+++..++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVG----KPNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecC----cccccCHHH
Confidence 347999999999999 88999999999999999876432 2368899999999999987 456788776
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|--.
T Consensus 219 v---k~gavvIDvGin~ 232 (281)
T PRK14183 219 V---KEGAIVIDIGINR 232 (281)
T ss_pred c---CCCcEEEEeeccc
Confidence 4 8999999998544
No 139
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.92 E-value=1.7e-05 Score=70.81 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=61.9
Q ss_pred CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------Cc---cccCCHHHhcccCCEEEEeccCCh
Q 042102 149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------NY---KYYPNLIDLASNCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~el~~~aDvV~~~lp~~~ 211 (317)
++|+||| .|.||+.+++.|...|.+|.+++|+++... +. ....+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 899999999999999999998888753210 10 112356788999999999999553
Q ss_pred hhhccccHHHHhccCCCcEEEEeCCCccc
Q 042102 212 ETQHIVNRQVINALGPKGVLINIGRGLLV 240 (317)
Q Consensus 212 ~t~~li~~~~l~~mk~gavlVN~~rg~~v 240 (317)
- ..++ ++.-..++ +.++|++.-|--.
T Consensus 81 ~-~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 V-LKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred H-HHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 2 2233 22222343 5899999766433
No 140
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.91 E-value=2.1e-05 Score=73.92 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=63.6
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC------CCcc--ccCCHHHhcccCCEEEEeccCChhhhcc
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN------LNYK--YYPNLIDLASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~------~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~l 216 (317)
+.|++|+|+|.|.||+.+++.++..|. +|.+++|++... .+.. ...++.+.+.++|+|+.+.|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 689999999999999999999998774 788999876432 1111 123466778899999999986543 222
Q ss_pred ccHHHHhcc-CCCcEEEEeCCCc
Q 042102 217 VNRQVINAL-GPKGVLINIGRGL 238 (317)
Q Consensus 217 i~~~~l~~m-k~gavlVN~~rg~ 238 (317)
.+..++.. +++.++||++...
T Consensus 255 -~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 255 -VERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred -HHHHHhhCCCCCeEEEEeCCCC
Confidence 23333332 3577888888543
No 141
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=6.7e-05 Score=69.34 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=82.9
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.+|..|...|++|+.+... ..++.+.+++||+|+.++. ..++|..++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 3479999999999875 6999999999999999887532 2368899999999999986 446888887
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET 291 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~ 291 (317)
+ |+|+++||+|.-.+. +|++ .=||-.. ...+. --.+||.-||...-.
T Consensus 220 i---k~gavVIDvGi~~~~----------~gkl---~GDvd~e------~v~~~-a~~iTPVPGGVGpvT 266 (284)
T PRK14190 220 V---KEGAVVIDVGVNRLE----------NGKL---CGDVDFD------NVKEK-ASYITPVPGGVGPMT 266 (284)
T ss_pred c---CCCCEEEEeeccccC----------CCCe---eccCcHH------HHhhh-ceEecCCCCCChHHH
Confidence 6 899999999876532 3444 3455211 11112 236899877766543
No 142
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.89 E-value=1.9e-05 Score=68.45 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=66.7
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhcccC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLASNC 200 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~~a 200 (317)
+|+|||.|.||+.+|..+...|++|..+|+++... .+ .....+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 69999999999999999999999999999876421 00 11246788888 99
Q ss_pred CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102 201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249 (317)
Q Consensus 201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al 249 (317)
|+|+=++|-+-+.+.-+-++.-+.++++++|...+.+ .....|...+
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~ 126 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAAL 126 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTS
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhcc
Confidence 9999999988877755556666678899998655333 4444565555
No 143
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=8.1e-05 Score=68.83 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=65.7
Q ss_pred ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.++.||++.|||-+. +|+.++..|...|++|..+... ..++.+..++||+|++++. -.+++..+.+
T Consensus 155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvG----kp~~i~~~~v 221 (288)
T PRK14171 155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIG----SPLKLTAEYF 221 (288)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CCCccCHHHc
Confidence 468999999999985 6999999999999999877532 2368999999999999988 3468888764
Q ss_pred hccCCCcEEEEeCCCc
Q 042102 223 NALGPKGVLINIGRGL 238 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~ 238 (317)
|+|+++||+|--.
T Consensus 222 ---k~GavVIDvGin~ 234 (288)
T PRK14171 222 ---NPESIVIDVGINR 234 (288)
T ss_pred ---CCCCEEEEeeccc
Confidence 8999999998533
No 144
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=9.1e-05 Score=68.86 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=84.0
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|..+... ..++.+..++||+|+++++ ..+++..++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAG----RPNLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 3479999999999885 6999999999999999887532 2368899999999999988 346788776
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETR 292 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~ 292 (317)
.|+|+++||+|--.+.+.+ .+|++ .=||-.. ...+. --.+||--||...-..
T Consensus 220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~------~v~~~-a~~iTPVPGGVGp~T~ 271 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFE------EVEPV-AAAITPVPGGVGPMTV 271 (297)
T ss_pred ---cCCCCEEEEeccccccccc------cCCce---eCCccHH------HHHhh-ceEecCCCCCchHHHH
Confidence 4899999999866543211 13444 3455321 11222 2368998787665443
No 145
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.87 E-value=2.2e-05 Score=76.96 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=66.9
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C--ccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N--YKYYPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.+.|++|+|+|.|.||+.+++.|+..|+ +|.+++|+..... + .....++.+.+.++|+|+.+.+.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 7999998764321 1 111234567788999999997644 34
Q ss_pred cccHHHHhcc-----CCCcEEEEeCCCc
Q 042102 216 IVNRQVINAL-----GPKGVLINIGRGL 238 (317)
Q Consensus 216 li~~~~l~~m-----k~gavlVN~~rg~ 238 (317)
++.++.++.+ +.+.++||++-..
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 5677777654 2457888887533
No 146
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=6.6e-05 Score=69.29 Aligned_cols=113 Identities=25% Similarity=0.337 Sum_probs=81.7
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.+|..|...|++|+.+.... .++.+..++||+|+++++ ..+++..++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVG----VPHFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 3468999999999985 69999999999999998775321 368899999999999988 456788876
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET 291 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~ 291 (317)
+|+|+++||+|--.+. +|++ .-||-..+ .... --.+||-=||...-.
T Consensus 218 ---vk~GavVIDvGin~~~----------~gkl---~GDVd~~~------v~~~-a~~iTPVPGGVGp~T 264 (282)
T PRK14169 218 ---VKPGAVVIDVGISRGA----------DGKL---LGDVDEAA------VAPI-ASAITPVPGGVGPMT 264 (282)
T ss_pred ---cCCCcEEEEeeccccC----------CCCe---eecCcHHH------HHhh-ccEecCCCCCcHHHH
Confidence 5899999999864432 3454 34553211 1111 237899777755433
No 147
>PLN00203 glutamyl-tRNA reductase
Probab=97.85 E-value=2.2e-05 Score=78.61 Aligned_cols=91 Identities=16% Similarity=0.307 Sum_probs=68.8
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------Cc----cccCCHHHhcccCCEEEEeccCChh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------NY----KYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+..... +. ....++.+.+.++|+|+++.|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 3779999999999999999999999997 6999998864321 11 1224567789999999998763
Q ss_pred hhccccHHHHhccCCC-------cEEEEeCCCc
Q 042102 213 TQHIVNRQVINALGPK-------GVLINIGRGL 238 (317)
Q Consensus 213 t~~li~~~~l~~mk~g-------avlVN~~rg~ 238 (317)
...+|.++.++.++++ -+|||.+=..
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 3557888888877432 4788887543
No 148
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.84 E-value=8.9e-05 Score=66.90 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=66.4
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCC---CE-EEEeCCC-CCCC------CCccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFD---CI-IGYNSRT-EKPN------LNYKYYPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G---~~-V~~~~~~-~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.+++|||||.|.+|+.+++.+...| .+ +++++++ .+.. .+.....+.+++++++|+|++++|... .+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence 3578999999999999999987665 33 6667664 2221 122334678889999999999999542 233
Q ss_pred cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
++ ++.-..++ +.++|+++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 33 22222233 6789999766 4555666666443
No 149
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=0.00013 Score=67.15 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=66.3
Q ss_pred ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.++.||++.|||-+. +|+.++..|...|++|+.+... ..++.+..++||+|+++++ -.++|.+++
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~- 219 (278)
T PRK14172 154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIG----RPKFIDEEY- 219 (278)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCccCHHH-
Confidence 469999999999885 6999999999999999887642 2368999999999999988 446788877
Q ss_pred hccCCCcEEEEeCCCc
Q 042102 223 NALGPKGVLINIGRGL 238 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~ 238 (317)
.|+|+++||+|--.
T Consensus 220 --ik~gavVIDvGin~ 233 (278)
T PRK14172 220 --VKEGAIVIDVGTSS 233 (278)
T ss_pred --cCCCcEEEEeeccc
Confidence 58999999997544
No 150
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=8.8e-05 Score=68.47 Aligned_cols=80 Identities=13% Similarity=0.261 Sum_probs=66.7
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.+|..|...|++|+.+.... .++.+..++||+|++++. -.+++.++.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvG----kp~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAG----CVNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence 3469999999999985 69999999999999998776432 368999999999999988 456788876
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
.|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGin~ 232 (282)
T PRK14166 219 ---VKEGVIVVDVGINR 232 (282)
T ss_pred ---cCCCCEEEEecccc
Confidence 48999999998543
No 151
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=9.9e-05 Score=68.14 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=66.7
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|+.+... ..++.+..++||+|++++. ..+++..++
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvG----k~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVG----KPEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence 3479999999999985 6999999999999999987642 2368899999999999988 456788776
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|--.
T Consensus 221 i---k~gavVIDvGin~ 234 (284)
T PRK14177 221 I---SEGAVLLDAGYNP 234 (284)
T ss_pred c---CCCCEEEEecCcc
Confidence 4 8999999998543
No 152
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.79 E-value=9.8e-05 Score=69.56 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=60.7
Q ss_pred cCCeEEEEecChhHHHHHHHHhh-CC-CEEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA-FD-CIIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++.+.. + .....++++++++||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46799999999999999986553 55 47999999865421 1 223467889999999998877744
Q ss_pred hccccHHHHhccCCCcEEEEeCC
Q 042102 214 QHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~r 236 (317)
..++..+ .+++|+.+.-++.
T Consensus 201 ~pvl~~~---~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRGE---WLKPGTHLDLVGN 220 (314)
T ss_pred CCEecHH---HcCCCCEEEeeCC
Confidence 4566654 4689995544444
No 153
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.79 E-value=8.9e-05 Score=70.26 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=71.9
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCc-----------------cccCCHHHhcccCCEEEEec
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNY-----------------KYYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~-----------------~~~~~l~el~~~aDvV~~~l 207 (317)
++|+|||.|.||..+|..|...|.+|.+++|+.... .+. ....+. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 579999999999999999999999999998854211 010 012233 5678999999999
Q ss_pred cCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 208 SLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 208 p~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
|... ...++ +...+.++++.++|.+.-| +-..+.+.+.+...++.
T Consensus 82 k~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 82 KSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred cCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 8653 34444 4455667889999888654 44456676766655543
No 154
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.78 E-value=0.0001 Score=68.55 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=88.8
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|+.+... ..++++..++||+|++++.- .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 3479999999999986 6999999999999999987542 23689999999999999863 36888876
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQG-RLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVV 300 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g-~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~ 300 (317)
.|+|+++||+|--.+-+. ...+| + ..-||...+ ..+. --.+||--||...-...-+.+.++
T Consensus 229 ---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~v 290 (299)
T PLN02516 229 ---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAE------VSKV-AGWITPVPGGVGPMTVAMLLKNTV 290 (299)
T ss_pred ---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHH------hhhh-ceEecCCCCCchHHHHHHHHHHHH
Confidence 489999999986443221 11123 3 345654211 1111 135899777766544433334444
Q ss_pred HHHHHHH
Q 042102 301 GNLQAHF 307 (317)
Q Consensus 301 ~nl~~~~ 307 (317)
+-.++++
T Consensus 291 ~a~~~~~ 297 (299)
T PLN02516 291 DGAKRVF 297 (299)
T ss_pred HHHHHHh
Confidence 3334433
No 155
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.78 E-value=8.1e-05 Score=70.23 Aligned_cols=80 Identities=15% Similarity=0.311 Sum_probs=66.5
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.+|..|...|++|..+.... .++.+..++||+|++++. ..+++..+.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvG----kp~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAG----IPNLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 4479999999999986 59999999999999998775322 368899999999999988 456788876
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|--.
T Consensus 276 v---k~GavVIDVGin~ 289 (345)
T PLN02897 276 L---KPGAVVIDVGTTP 289 (345)
T ss_pred c---CCCCEEEEccccc
Confidence 4 8999999998644
No 156
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.00011 Score=67.83 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=66.0
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|..+.... .++.+..++||+|+++++ ..++|.+++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvG----kp~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVG----KPNFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence 4469999999999885 69999999999999998875422 368889999999999988 446788866
Q ss_pred HhccCCCcEEEEeCCC
Q 042102 222 INALGPKGVLINIGRG 237 (317)
Q Consensus 222 l~~mk~gavlVN~~rg 237 (317)
.|+|+++||+|--
T Consensus 220 ---vk~gavVIDvGin 232 (282)
T PRK14180 220 ---VKEGAVVIDVGIN 232 (282)
T ss_pred ---cCCCcEEEEeccc
Confidence 4899999999853
No 157
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.00011 Score=67.89 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=89.2
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|+.+.... .++.+..++||+|++++. ..+++..++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVG----RPHLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 4479999999999875 69999999999999998775422 368899999999999987 346888877
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVG 301 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~ 301 (317)
+ |+|+++||+|--.+.++ .|+. ...=||- .+ ..... -.+||-=||...-...-+.+.+++
T Consensus 217 v---k~GavVIDVGin~~~~~--------~gk~-~l~GDVd-~~------v~~~a-~~iTPVPGGVGp~T~a~L~~N~~~ 276 (287)
T PRK14173 217 V---RPGAVVVDVGINRVGGN--------GGRD-ILTGDVH-PE------VAEVA-GALTPVPGGVGPMTVAMLMANTVI 276 (287)
T ss_pred c---CCCCEEEEccCccccCC--------CCce-eeecccc-Hh------HHhhC-cEEecCCCChhHHHHHHHHHHHHH
Confidence 5 89999999997654321 3441 1244554 11 11111 268887677554433333333333
Q ss_pred HHHHHHCC
Q 042102 302 NLQAHFGK 309 (317)
Q Consensus 302 nl~~~~~g 309 (317)
-.++...|
T Consensus 277 a~~~~~~~ 284 (287)
T PRK14173 277 AALRRRGG 284 (287)
T ss_pred HHHHHccC
Confidence 33333333
No 158
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.77 E-value=0.00037 Score=69.23 Aligned_cols=132 Identities=9% Similarity=0.081 Sum_probs=85.0
Q ss_pred CeEEEEecChhHHHHHHHHhhC--CCEEEEeCCCCCCC------------CC------------ccccCCHHHhcccCCE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF--DCIIGYNSRTEKPN------------LN------------YKYYPNLIDLASNCQI 202 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~~~~~~~~~~------------~~------------~~~~~~l~el~~~aDv 202 (317)
++|+|||+|.+|..+|..|... |.+|+++|..+..- .+ .....+..+.++.||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5899999999999999999865 68899998754321 00 1123456778899999
Q ss_pred EEEeccCChh-----------hhccc--cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEee-CCCCCCCC
Q 042102 203 LVVACSLTEE-----------TQHIV--NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLD-VFEHEPDV 268 (317)
Q Consensus 203 V~~~lp~~~~-----------t~~li--~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lD-V~~~EP~~ 268 (317)
+++|+|.... ...+. .+..-+.+++|.++|.-|.-.+=-.+.+.+.+.+.. .|.-+. ++.+|-+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 9999863221 11221 134455679999999988866555567777766521 111111 24566554
Q ss_pred Cc----ccCCCCceEEc
Q 042102 269 PE----ELIGLENVVLL 281 (317)
Q Consensus 269 ~~----~L~~~pnvi~t 281 (317)
+. .+...|++++-
T Consensus 161 ~G~a~~d~~~p~riViG 177 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIG 177 (473)
T ss_pred CCCcccccCCCCEEEEc
Confidence 42 57788888753
No 159
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.00012 Score=67.67 Aligned_cols=81 Identities=17% Similarity=0.370 Sum_probs=66.1
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
+.++.||++.|||-+. +|+.+|..|... ++.|+.+... ..++.+.+++||+|+++++ ..+++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG----~p~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIG----VPLFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence 3468999999999985 699999999887 7888876532 2368999999999999987 34678
Q ss_pred cHHHHhccCCCcEEEEeCCCcc
Q 042102 218 NRQVINALGPKGVLINIGRGLL 239 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~~ 239 (317)
..+++ |+|+++||+|--.+
T Consensus 215 ~~~~i---k~GavVIDvGin~~ 233 (287)
T PRK14181 215 KEEMI---AEKAVIVDVGTSRV 233 (287)
T ss_pred CHHHc---CCCCEEEEeccccc
Confidence 88774 89999999986553
No 160
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00012 Score=67.82 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=66.9
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|+.+.... .++.+..++||+|++++. ..+++..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvG----kp~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVG----IPNFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 3469999999999985 69999999999999998876422 368899999999999988 446788877
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|--.
T Consensus 222 i---k~gaiVIDVGin~ 235 (294)
T PRK14187 222 I---KKGAIVIDVGINS 235 (294)
T ss_pred c---CCCCEEEEecccc
Confidence 5 7999999998644
No 161
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.00044 Score=66.07 Aligned_cols=139 Identities=17% Similarity=0.269 Sum_probs=90.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------C------------C-ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------L------------N-YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~------------~-~~~~~~l~el~~~aDvV 203 (317)
.+|||||+|-||-.+|..+...|++|+++|-+++.- . + .....+.++ ++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence 699999999999999999999999999999765321 0 0 011233333 5599999
Q ss_pred EEeccC--Ch----hhhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC--CceEEEeeC---CCCCCCCC-
Q 042102 204 VVACSL--TE----ETQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSALLQG--RLGGAGLDV---FEHEPDVP- 269 (317)
Q Consensus 204 ~~~lp~--~~----~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g--~i~ga~lDV---~~~EP~~~- 269 (317)
++|+|- +. +.-.+.+ +..-+.||+|.++|==|.-.+=-.+.++.-|.+. .+. ..-|+ +.+|---|
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~PG 167 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCCC
Confidence 999883 21 1111111 3345579999999988887776677777776553 233 22453 45665333
Q ss_pred c---ccCCCCceEEcccCCCccHHHHHH
Q 042102 270 E---ELIGLENVVLLPHVASATVETRKA 294 (317)
Q Consensus 270 ~---~L~~~pnvi~tPH~a~~t~~~~~~ 294 (317)
+ .+.+.|+| +||.|..+.+.
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHHH
Confidence 2 46677877 47777665443
No 162
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.71 E-value=0.00014 Score=68.90 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=64.5
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCccc-cCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~-~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.+.|+++.|||.|.||+.+++.|...|. +|++.+|+.... .+.. .....+...++|+|+++..-|.....++..+.+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~ 249 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESL 249 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHH
Confidence 5889999999999999999999999996 699999987531 1110 011225568999999874434444456666666
Q ss_pred hccCCCcEEEEeCCCcccC
Q 042102 223 NALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd 241 (317)
+..++ -+|||.+=..=||
T Consensus 250 ~~~~~-r~~iDLAvPRdId 267 (338)
T PRK00676 250 ADIPD-RIVFDFNVPRTFP 267 (338)
T ss_pred hhccC-cEEEEecCCCCCc
Confidence 55332 3777776444333
No 163
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.69 E-value=7.3e-05 Score=69.19 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=70.3
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCCC----c------cccCCHHHhcccCCEEEEeccCChhh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNLN----Y------KYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~----~------~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
.+.++++.|+|.|.+|++++..|...| .+|.+++|+.+.... . ....++.+.+.++|+|+.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 578899999999999999999999999 589999997643210 0 00113356778899999999965321
Q ss_pred hccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102 214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRL 254 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i 254 (317)
..-...-.+..++++.+++++.-.+ ..+ .|+++.++..+
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~ 238 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGA 238 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcC
Confidence 1001111234567788888886543 233 44444444433
No 164
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.00019 Score=66.17 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=66.1
Q ss_pred ccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.++.||++.|||-+. +|+.++.+|...|++|..+... ..++.+..++||+|+++++ ..++|..+++
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvG----k~~~i~~~~i 219 (282)
T PRK14182 153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIG----KAELVKGAWV 219 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHHc
Confidence 468999999999985 6999999999999999887542 2368899999999999987 3567888764
Q ss_pred hccCCCcEEEEeCCCc
Q 042102 223 NALGPKGVLINIGRGL 238 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~ 238 (317)
|+|+++||+|--.
T Consensus 220 ---k~gaiVIDvGin~ 232 (282)
T PRK14182 220 ---KEGAVVIDVGMNR 232 (282)
T ss_pred ---CCCCEEEEeecee
Confidence 8999999998654
No 165
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.68 E-value=0.00031 Score=65.20 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=70.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCc-----------cccCCHHHhcccCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNY-----------KYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~-----------~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
++|+|||.|.||+.+|..|...|.+|..++++.... .+. ....+..++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999999999999988743321 111 112345555 8999999999954 3
Q ss_pred hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
+..++ +.....+.+++.+|....| +-.++.+.+.+...++.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 34333 3344456677888888776 33355666666555554
No 166
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.68 E-value=0.00013 Score=66.95 Aligned_cols=113 Identities=22% Similarity=0.319 Sum_probs=83.8
Q ss_pred cccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.+++|+++.|||-++| |+.++..|...+++|.++.... .++.+..++||+|++++- -.++|..+.
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d~ 217 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKADM 217 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Ccccccccc
Confidence 34799999999999985 8999999999999999886432 478899999999999977 346777655
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET 291 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~ 291 (317)
.|+|+++|++|--.+-+ +++. -||-..+ ...-.-.+||--||...-.
T Consensus 218 ---vk~gavVIDVGinrv~~----------~kl~---GDVdf~~-------v~~~a~~iTPVPGGVGPmT 264 (283)
T COG0190 218 ---VKPGAVVIDVGINRVND----------GKLV---GDVDFDS-------VKEKASAITPVPGGVGPMT 264 (283)
T ss_pred ---ccCCCEEEecCCccccC----------CceE---eeccHHH-------HHHhhcccCCCCCccCHHH
Confidence 58999999998655433 5554 4654322 2222336888878776543
No 167
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00037 Score=65.16 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCccccCCHHHhc-ccCCEEEEeccCChhhhccccHHHH
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLA-SNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
-.+|||||+|++|+-.|+.+...|+.|..++|+.-.. .+...+..+.+++ .+.|+|++|+... .+..++-.--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcCc
Confidence 4589999999999999999999999999999976322 2334566777776 4599999987633 24444433346
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCC-CCcccCCCCceEEcccCC
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPD-VPEELIGLENVVLLPHVA 285 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~-~~~~L~~~pnvi~tPH~a 285 (317)
+.+|.|++++++-.-....-+++.+-|-+.--.-..=-.| .|. .++.+..+|=|+.-=.++
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmf--GPksvnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMF--GPKSVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCc--CCCcCCCccccCceEEEEeecc
Confidence 6789999999998877777777777664432211111112 232 234566788776665544
No 168
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.67 E-value=0.00015 Score=63.34 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=59.3
Q ss_pred ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------Cc-------cccCCHHHhcccCCEEEE
Q 042102 144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------NY-------KYYPNLIDLASNCQILVV 205 (317)
Q Consensus 144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~-------~~~~~l~el~~~aDvV~~ 205 (317)
..++++++.|+|. |.+|+.+++.+...|.+|..++|+..... +. ....++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 3578899999996 99999999999999999998888653210 00 001223456777887777
Q ss_pred eccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102 206 ACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 206 ~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd 241 (317)
+.|....+ .+. .-...+++.+++|+.+...++
T Consensus 104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCCCCcee--chh--hhcccCceeEEEEccCCCCCC
Confidence 77654321 111 111234466677766655443
No 169
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.67 E-value=0.00017 Score=68.46 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=66.7
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.++.||++.|||-+. +|+.++..|...|++|..+... ..++.+..++||+|+.++. ..+++..+.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVG----QPNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence 3469999999999985 6999999999999999887532 2468999999999999987 456788877
Q ss_pred HhccCCCcEEEEeCCCc
Q 042102 222 INALGPKGVLINIGRGL 238 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~ 238 (317)
+ |+|+++||+|--.
T Consensus 293 v---K~GAvVIDVGIn~ 306 (364)
T PLN02616 293 I---KPGAVVIDVGINP 306 (364)
T ss_pred c---CCCCEEEeccccc
Confidence 4 8999999998544
No 170
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.66 E-value=0.00016 Score=67.30 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=70.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC----CCCc-------------cccCCHHHhcccCCEEEEeccCCh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP----NLNY-------------KYYPNLIDLASNCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~----~~~~-------------~~~~~l~el~~~aDvV~~~lp~~~ 211 (317)
++|+|+|.|.+|..+|..|...|.+|..++|.... ..+. ....+.++....+|+|++++|...
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~ 80 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ 80 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence 47999999999999999999999999988872110 0010 012345666789999999999543
Q ss_pred hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
+..++ +.....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 81 -~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 81 -LDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -HHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 33333 3334446778888887665 34466777777655544
No 171
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=0.00021 Score=66.09 Aligned_cols=112 Identities=18% Similarity=0.288 Sum_probs=82.1
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhh--CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEA--FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
+.++.||++.|||-+. +|+.++..|.. .+++|..+... ..++.+..++||+|++++. ..+++..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvG----kp~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAG----VAHLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecC----CcCccCH
Confidence 4479999999999875 69999999987 78999887542 2368999999999999988 3467888
Q ss_pred HHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH
Q 042102 220 QVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET 291 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~ 291 (317)
+++ |+|+++||+|.-.+ .+|++ .-||- .+ ..... -.+||-=||...-.
T Consensus 220 ~~i---k~GavVIDvGin~~----------~~gkl---~GDvd-~~------v~~~a-~~iTPVPGGVGp~T 267 (284)
T PRK14193 220 DMV---KPGAAVLDVGVSRA----------GDGKL---VGDVH-PD------VWEVA-GAVSPNPGGVGPMT 267 (284)
T ss_pred HHc---CCCCEEEEcccccc----------CCCcE---EeecC-Hh------HHhhC-CEEeCCCCChhHHH
Confidence 774 89999999986553 24554 44654 11 11222 26899877766433
No 172
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.00023 Score=66.15 Aligned_cols=79 Identities=16% Similarity=0.357 Sum_probs=64.1
Q ss_pred ccccCCeEEEEecCh-hHHHHHHHHhh----CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 144 TKFTGKSVGILGMGR-IGTAIAKRAEA----FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
.++.||++.|||-+. +|+.++..|.. .|++|..+.... .++.+.+++||+|+.+++.. ++|.
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li~ 221 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFIT 221 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----CccC
Confidence 469999999999985 69999999876 578887665322 35899999999999999532 6788
Q ss_pred HHHHhccCCCcEEEEeCCCc
Q 042102 219 RQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~ 238 (317)
++++ |+|+++||+|-..
T Consensus 222 ~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 222 ADMV---KPGAVVIDVGINR 238 (295)
T ss_pred HHHc---CCCCEEEEeeccc
Confidence 8887 9999999998544
No 173
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.60 E-value=0.002 Score=57.91 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=69.6
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-----------------CCC----c--cccCCHHHh-ccc
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-----------------NLN----Y--KYYPNLIDL-ASN 199 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-----------------~~~----~--~~~~~l~el-~~~ 199 (317)
.++.|++|+|.|+|++|+.+++.|..+|++|++...+... ..+ + ....+.+++ -.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 4689999999999999999999999999999854332100 000 0 001122332 246
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
||+++-|.+ .+.++.+...+++ =.+++--+-+.+ . ..-.+.|+++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 898888865 4567888888887 344555556665 4 5566888888886
No 174
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00024 Score=65.67 Aligned_cols=79 Identities=19% Similarity=0.346 Sum_probs=65.2
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhh----CCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEA----FDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
+.++.||++.|||-+. +|+.++..|.. .+++|..+.... .++.+.+++||+|+.+++ ..+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence 3468999999999986 69999999987 788887765321 368999999999999985 45678
Q ss_pred cHHHHhccCCCcEEEEeCCC
Q 042102 218 NRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg 237 (317)
.++++ |+|+++||+|--
T Consensus 219 ~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 219 TADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CHHHc---CCCCEEEEeeee
Confidence 88776 999999999843
No 175
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.57 E-value=0.00024 Score=67.22 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=63.2
Q ss_pred CCeEEEEecChhHHHHHHHHhh-CC-CEEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEA-FD-CIIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
-+++||||.|.+|+..++.+.. +. -+|.+|+++.+... + .....+.++++++||+|++|+|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4689999999999987776653 33 47899999865421 1 223578999999999999998854 4
Q ss_pred ccccHHHHhccCCCcEEEEeCCC
Q 042102 215 HIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~rg 237 (317)
.++..+. +|||+.+..+|.-
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGAD 224 (325)
T ss_pred cEecHHH---cCCCCEEEecCCC
Confidence 5666554 5999999999853
No 176
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.57 E-value=0.00042 Score=63.79 Aligned_cols=105 Identities=14% Similarity=0.052 Sum_probs=72.5
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------CccccCCHHH-hcccCCEEEEeccCC--hhh
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKYYPNLID-LASNCQILVVACSLT--EET 213 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~e-l~~~aDvV~~~lp~~--~~t 213 (317)
..+++++|+|.|.+|++++..+...|++|.+++|+..+.. +.....++++ ...++|+|+.++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 4678999999999999999999999999999998754321 1111123333 345799999999974 222
Q ss_pred hc-cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 214 QH-IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 214 ~~-li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
.. .+. .+.++++.+++|+.-.+. ++ .|.+..++..+.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G~~ 232 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCe
Confidence 11 122 345789999999977664 33 577777666654
No 177
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00033 Score=65.00 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=64.9
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
+.++.||++.|||-+. +|+.++..|... +++|..+.... .++.+..++||+|++++. ..++|
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvG----kp~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALG----QPEFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccC----CcCcc
Confidence 3469999999999985 699999999866 68888774321 368999999999999988 44678
Q ss_pred cHHHHhccCCCcEEEEeCCCc
Q 042102 218 NRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~ 238 (317)
..+. .|+|+++||+|--.
T Consensus 219 ~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 219 KADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CHHH---cCCCCEEEEecCcc
Confidence 8766 58999999998644
No 178
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.57 E-value=7.4e-05 Score=58.68 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=58.1
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-CCCcc-ccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-NLNYK-YYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-~~~~~-~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.++|++|.|||.|.+|..-++.|...|++|.++++.... ..... ....+++.+..+|+|+.+.+.. + +++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~-~----~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDP-E----LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-H-H----HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCH-H----HHHHHH
Confidence 588999999999999999999999999999999887310 01111 1233456688899888776532 2 345555
Q ss_pred hccCCCcEEEEeCC
Q 042102 223 NALGPKGVLINIGR 236 (317)
Q Consensus 223 ~~mk~gavlVN~~r 236 (317)
...+.-.++||++-
T Consensus 79 ~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 79 ADARARGILVNVVD 92 (103)
T ss_dssp HHHHHTTSEEEETT
T ss_pred HHHhhCCEEEEECC
Confidence 56666677888753
No 179
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00036 Score=64.90 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=64.5
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
+.++.||++.|||-+. +|+.+|..|... +++|..+... ..++.+..++||+|++++. -.+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvG----kp~~i 218 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAG----VPELI 218 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence 3469999999999985 699999999765 7889876432 1368899999999999977 34578
Q ss_pred cHHHHhccCCCcEEEEeCCCc
Q 042102 218 NRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~ 238 (317)
..++ .|+|+++||+|--.
T Consensus 219 ~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 219 DGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 8766 58999999998544
No 180
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00035 Score=65.02 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=86.1
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhC----CCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccc
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAF----DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
+.++.|+++.|||-+. +|+.+|..|... +++|..+... ..++.+..++||+|++++. ..+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvG----kp~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAG----VPNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecC----CcCcc
Confidence 4579999999999875 699999999876 7888876432 2368899999999999986 34678
Q ss_pred cHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHH
Q 042102 218 NRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~ 297 (317)
..+.+ |+|+++||+|--.+.+. .++|+.. ..-||-.. ...+. --.+||--||...-...-+.+
T Consensus 223 ~~~~i---k~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe------~v~~~-a~~iTPVPGGVGp~T~a~L~~ 285 (297)
T PRK14168 223 KPEWI---KPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFD------AVKEI-AGKITPVPGGVGPMTIAMLMR 285 (297)
T ss_pred CHHHc---CCCCEEEecCCCccCcc------ccCCCcc-eeccccHH------HHHhh-ccEecCCCCCchHHHHHHHHH
Confidence 88764 89999999986553211 1234311 23454311 11222 136889777766544333333
Q ss_pred HHHHHHHH
Q 042102 298 LVVGNLQA 305 (317)
Q Consensus 298 ~~~~nl~~ 305 (317)
.+++..++
T Consensus 286 N~~~a~~~ 293 (297)
T PRK14168 286 NTLKSAKF 293 (297)
T ss_pred HHHHHHHH
Confidence 34333333
No 181
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.53 E-value=0.00035 Score=66.53 Aligned_cols=90 Identities=26% Similarity=0.268 Sum_probs=63.9
Q ss_pred eEEEEecChhHHHHHHHHhhCC--------CEEEEeCCCC-----C-----------C--CCC------ccccCCHHHhc
Q 042102 150 SVGILGMGRIGTAIAKRAEAFD--------CIIGYNSRTE-----K-----------P--NLN------YKYYPNLIDLA 197 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G--------~~V~~~~~~~-----~-----------~--~~~------~~~~~~l~el~ 197 (317)
+|+|||.|+.|.++|..|...| .+|..|.+.. . . .++ .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 8998887622 0 0 011 11346789999
Q ss_pred ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccC
Q 042102 198 SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 198 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd 241 (317)
+.||+|++++|... .+.++ .+.-..++++..+|+++-|=-.+
T Consensus 81 ~~ADiIIlAVPs~~-i~~vl-~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIPHQF-LEGIC-KQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECChHH-HHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence 99999999999432 23332 34444678889999998874333
No 182
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.49 E-value=0.00094 Score=62.48 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=78.3
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhcc
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLAS 198 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~ 198 (317)
-++|||||.|.||+.+|..+..-|+.|..+|++++.. .+ .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 3699999999999999999988779999999874321 00 00112222 689
Q ss_pred cCCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102 199 NCQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVFE 263 (317)
Q Consensus 199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~ 263 (317)
.||+|+=++|-+-+.+.-+-++.=+..+|+++| -|||+ +.-.++.+++ +.+=+..++=.|.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~-~rper~iG~HFfN 143 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEAL-KRPERFIGLHFFN 143 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHh-CCchhEEEEeccC
Confidence 999999999998888776656666678899998 55554 4455677777 4444445555443
No 183
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.49 E-value=0.00049 Score=60.66 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=67.0
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC---CCC---------CCC-----------------cc-----
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT---EKP---------NLN-----------------YK----- 188 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~---~~~---------~~~-----------------~~----- 188 (317)
..|..++|+|+|+|.+|..+|+.|...|. ++..+|+. ... ..+ ..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45888999999999999999999999998 68888865 110 000 00
Q ss_pred ---ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEe
Q 042102 189 ---YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI 234 (317)
Q Consensus 189 ---~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~ 234 (317)
...++.++++++|+|+.+ ..+.+++.++.......++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 012345678899999888 688889988888888888876666643
No 184
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.47 E-value=0.00031 Score=68.57 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=63.1
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C---ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N---YKYYPNLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~---~~~~~~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
.+.|+++.|||.|.+|+.+++.|...|. ++++++|+..... + ...+.++.+.+.++|+|+.|.+.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 7999999864321 1 112345677899999999997743 3
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
.+|..+... .+.-++||.+=
T Consensus 255 ~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCC
Confidence 456655542 22356677653
No 185
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.46 E-value=0.00035 Score=65.58 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=69.1
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC-----------C--CC------CccccCCHHHhcccCCEEEEeccC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK-----------P--NL------NYKYYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~-----------~--~~------~~~~~~~l~el~~~aDvV~~~lp~ 209 (317)
++|+|+|.|.-|.++|+.|...|..|..|.|.++ + .. ......++.++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5899999999999999999999999988876432 1 01 122457899999999999999993
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHH
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~ 246 (317)
. ..+.++. ..-..+++++.+|+++-|=-.+.-.+.
T Consensus 82 ~-~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 82 Q-ALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred H-HHHHHHH-HHhhhccCCCeEEEEeccccCCCcchH
Confidence 3 2333222 222456799999999877555444333
No 186
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.46 E-value=0.00037 Score=65.98 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=59.0
Q ss_pred EEEEecChhHHHHHHHHhh-CCCEEEE-eCCCCCCC------CCc------------------cccCCHHHhcccCCEEE
Q 042102 151 VGILGMGRIGTAIAKRAEA-FDCIIGY-NSRTEKPN------LNY------------------KYYPNLIDLASNCQILV 204 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~~~~~~------~~~------------------~~~~~l~el~~~aDvV~ 204 (317)
|||+|||.||+.+++.+.. -+++|.+ .|..++.. .++ ....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999998764 4577764 44333210 010 11336889999999999
Q ss_pred EeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 205 VACSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 205 ~~lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
.|.|. +.+..+++.+..|+.+++|+..-
T Consensus 81 e~Tp~---~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATPG---GIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCCC---CCChhhHHHHHhCCcCEEEECCC
Confidence 88654 46678999999999999888753
No 187
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.46 E-value=0.00025 Score=68.66 Aligned_cols=94 Identities=17% Similarity=0.281 Sum_probs=68.3
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------C--ccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------N--YKYYPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
+|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+.. + +....++.+.+.++|+|+++.. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 4899999999999999999999999996 7899999876431 2 2234567788999999999854 3345
Q ss_pred cccHHHHhcc-C--CCcEEEEeCCCcccC
Q 042102 216 IVNRQVINAL-G--PKGVLINIGRGLLVD 241 (317)
Q Consensus 216 li~~~~l~~m-k--~gavlVN~~rg~~vd 241 (317)
++..+.+... + +.-++||.+=..-|+
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence 6666655433 2 124788887544343
No 188
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.44 E-value=0.00036 Score=65.46 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=65.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC---------Cccc-cCCHHHhcccCCEEEEeccCChhhh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL---------NYKY-YPNLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
..++++|+|.|.+|+..++.+.. ++. +|.+|+|++.+.. +... ..+.++++.++|+|+.+.|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999864 675 6899999865321 1111 357889999999999998865 3
Q ss_pred ccccHHHHhccCCCcEEEEeCCCc
Q 042102 215 HIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
.+|.. .+|||+.+..+|.-.
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred ceeCc----cCCCCCEEEecCCCC
Confidence 56654 269999999998543
No 189
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.44 E-value=0.00052 Score=65.95 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=63.5
Q ss_pred CCeEEEEecChhHHHHHHHHhhCC-------CEEEEeCCCCCC------------------CCC------ccccCCHHHh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFD-------CIIGYNSRTEKP------------------NLN------YKYYPNLIDL 196 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G-------~~V~~~~~~~~~------------------~~~------~~~~~~l~el 196 (317)
.++|+|||.|..|.++|..|...| .+|..|.+.+.- .++ .....+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999997655 788877766531 011 1124678899
Q ss_pred cccCCEEEEeccCChhhhccccHHHHh--ccCCCcEEEEeCCCcccC
Q 042102 197 ASNCQILVVACSLTEETQHIVNRQVIN--ALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 197 ~~~aDvV~~~lp~~~~t~~li~~~~l~--~mk~gavlVN~~rg~~vd 241 (317)
++.||+|++++|... .+.++ ++.-. .+++++++|+++-|=-.+
T Consensus 91 v~~aDiIvlAVPsq~-l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 91 VEDADLLIFVIPHQF-LESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HhcCCEEEEEcChHH-HHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 999999999999432 33332 22222 456678999998775443
No 190
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.37 E-value=0.00045 Score=61.23 Aligned_cols=92 Identities=24% Similarity=0.275 Sum_probs=63.0
Q ss_pred CeEEEEecChhHHHHHHHHhhC--CCE-EEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF--DCI-IGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
.+|||||+|.||+.+.+.++.- +++ +.+||++.++.. ......+++|++++.|+++=|.. .++.+ +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~----e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVR----E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHH----H
Confidence 4799999999999999999742 454 678898765432 12234679999999998887744 22223 2
Q ss_pred HHHhccCCCcEEEEeCCCcccCHHHH
Q 042102 220 QVINALGPKGVLINIGRGLLVDEHEL 245 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~~aL 245 (317)
-..+.+|.|-=+|=+|-|.+.|+.-+
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHHH
Confidence 23344566666666777888876543
No 191
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.37 E-value=0.0028 Score=59.50 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCcc--------------ccCCHHHhcccCCEEEEeccCCh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNYK--------------YYPNLIDLASNCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~--------------~~~~l~el~~~aDvV~~~lp~~~ 211 (317)
++|+|||.|.||..+|.+|...|.+|.++.|+.... .+.. ...+. +....+|+|+++++...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCCC
Confidence 689999999999999999999999998887754211 0100 01122 34678999999999553
Q ss_pred hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAG 258 (317)
Q Consensus 212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~ 258 (317)
+...+ +..-..+++++.++...-| +-.++.|.+.+...++.++.
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 23222 2334456778888887665 44667777777666766543
No 192
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.37 E-value=0.00056 Score=64.95 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=69.6
Q ss_pred ccccccCCeEEEEec-ChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC------CccccCCHHHhcccCCEEEEeccCChh
Q 042102 142 MTTKFTGKSVGILGM-GRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL------NYKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 142 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~------~~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
++..+.|++|.|+|. |.||+.+++.|.. .|. +++..+|+..... ......++++.+.++|+|+.+....
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 355799999999999 8999999999974 564 7888888653321 1112235778999999887665432
Q ss_pred hhc-cccHHHHhccCCCcEEEEeCCCcccCH
Q 042102 213 TQH-IVNRQVINALGPKGVLINIGRGLLVDE 242 (317)
Q Consensus 213 t~~-li~~~~l~~mk~gavlVN~~rg~~vd~ 242 (317)
.. +++++.+ +++.++||.|+..=||.
T Consensus 227 -~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 23 3777654 79999999999877764
No 193
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.36 E-value=0.004 Score=56.84 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=71.3
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEE-eCCCC-----C--------------CCCC-----c------cccCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY-NSRTE-----K--------------PNLN-----Y------KYYPN 192 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~-~~~~~-----~--------------~~~~-----~------~~~~~ 192 (317)
.++.|+||.|-|+|++|+.+|+.|..+|++|++ .|.+. + .... + ....+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 468999999999999999999999999999884 44110 0 0000 0 00112
Q ss_pred HHHh-cccCCEEEEeccCChhhhccccHHHHhccC--CCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 193 LIDL-ASNCQILVVACSLTEETQHIVNRQVINALG--PKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 193 l~el-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
.+++ -..||+++-| .+.+.|+++..+.++ +-.+++-.+-|++-+ +-.+.|.++.|.
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 2333 3468988877 357889999888885 345566777777655 445777787776
No 194
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.34 E-value=0.00077 Score=64.22 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=61.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-------------CC-C------ccccCCHHHhcccCCEEEEecc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------------NL-N------YKYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~-~------~~~~~~l~el~~~aDvV~~~lp 208 (317)
++|+|||.|.+|..+|..|...| .|..|.+++.. .. + .....++.+.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 58999999999999999999888 55555553211 00 1 1123567788999999999999
Q ss_pred CChhhhccccHHHHhccCCCcEEEEeCCCcc
Q 042102 209 LTEETQHIVNRQVINALGPKGVLINIGRGLL 239 (317)
Q Consensus 209 ~~~~t~~li~~~~l~~mk~gavlVN~~rg~~ 239 (317)
.. .++..+ ++.-..++++..+|++.-|=-
T Consensus 87 s~-~~~~vl-~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 87 SH-GFRGVL-TELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred HH-HHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence 32 344433 334445678888999887643
No 195
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0042 Score=58.59 Aligned_cols=152 Identities=13% Similarity=0.143 Sum_probs=114.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------CccccCCHHHh---cccCCEEEEeccCChhhhc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------NYKYYPNLIDL---ASNCQILVVACSLTEETQH 215 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---~~~aDvV~~~lp~~~~t~~ 215 (317)
..+|+||++.|||.++-.....|+.|.+|+|+..+.. ...-..+++++ ++.-..|++.+.....+..
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4699999999999999999999999999999764321 11224567776 6778888888877766666
Q ss_pred cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCC-cccCCCCceEEcccCCCccHHHHHH
Q 042102 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIGLENVVLLPHVASATVETRKA 294 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~-~~L~~~pnvi~tPH~a~~t~~~~~~ 294 (317)
+| ++....|.+|-++|+-+...--|...-.+.|.+..|-..+.-|-..|...- .|- + +-|.+.+++.+
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-------l---MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-------L---MPGGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-------c---CCCCChHHHHH
Confidence 66 567788999999999999999999999999999998888888887776422 121 1 23677888888
Q ss_pred HHHHHHHHHHHHHCCCC
Q 042102 295 MADLVVGNLQAHFGKKP 311 (317)
Q Consensus 295 ~~~~~~~nl~~~~~g~~ 311 (317)
+-.++.+---..-+|+|
T Consensus 156 ik~ifq~iaakv~~~ep 172 (487)
T KOG2653|consen 156 IKDIFQKIAAKVSDGEP 172 (487)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 86655444333335554
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.32 E-value=0.0012 Score=52.94 Aligned_cols=100 Identities=24% Similarity=0.369 Sum_probs=69.6
Q ss_pred CeEEEEe----cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102 149 KSVGILG----MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA 224 (317)
Q Consensus 149 ~~vgIiG----~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~ 224 (317)
|+++||| -+..|..+.+.|+..|++|+..++....-.+...+.++.|.-...|++++++|... +..++. .+..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~-~~~~v~--~~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK-VPEIVD--EAAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH-HHHHHH--HHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH-HHHHHH--HHHH
Confidence 5899999 78999999999999999999999887666677778899985588999999998433 233332 2334
Q ss_pred cCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 225 LGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 225 mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
+..+.+++..+ ..++.+.+.+++..+.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 46778888877 6677888888888776
No 197
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.31 E-value=0.00093 Score=63.27 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred cCCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC----------Cc--cccCCHHHhcccCCEEEEeccCChh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL----------NY--KYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
..++++|||.|.+|+..++.+. .++. +|.+|+|+..+.. +. ....++++.+++||+|+.+.|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3569999999999999999886 4775 6899999865321 11 22467889999999999998864
Q ss_pred hhccccHHHHhccCCCcEEEEeCC
Q 042102 213 TQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~r 236 (317)
..+|..+. +|+|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 35666554 689998888864
No 198
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.30 E-value=0.00061 Score=64.43 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=59.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc------cCCHHHhcccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY------YPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~------~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.|++|+|+|+|..|....+.++++|++|++++++.++. .+... ....+++-+.+|+++.+.+ .. +-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~-~~- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PA-TL- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hh-hH-
Confidence 48999999999999999999999999999999987653 11111 1122333333788888777 32 22
Q ss_pred cccHHHHhccCCCcEEEEeCCC
Q 042102 216 IVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg 237 (317)
...++.+|++..++-+|=.
T Consensus 243 ---~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---HHHHHHHhcCCEEEEECCC
Confidence 3456667777777766543
No 199
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.30 E-value=0.0095 Score=53.17 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=68.4
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC----------CC------CCCcccc-----CCHHHh-cccC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE----------KP------NLNYKYY-----PNLIDL-ASNC 200 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~----------~~------~~~~~~~-----~~l~el-~~~a 200 (317)
.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+. +. ....... .+-+++ -..|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 46899999999999999999999999999765 455443 10 0000000 111233 2378
Q ss_pred CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
|+++-|.+ .+.|+.+....++ -.+++--+.+++-+ .-.+.|.+..+.
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99988876 3478888888786 44556666777655 345666666665
No 200
>PLN02477 glutamate dehydrogenase
Probab=97.28 E-value=0.0073 Score=58.87 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=71.6
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CCC---------------CCcc--ccCCHHHh-cc
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KPN---------------LNYK--YYPNLIDL-AS 198 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~~---------------~~~~--~~~~l~el-~~ 198 (317)
+.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+. +.. .++. ...+.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 447899999999999999999999999999988 444431 000 0000 01122232 44
Q ss_pred cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
.||+++-|. ..+.|+++....++ -.+++--+-+.+ .. .-.+.|++..|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 788887763 45678888888875 456677778887 33 345788888876
No 201
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.26 E-value=0.00086 Score=63.47 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=63.0
Q ss_pred cCCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
..++++|||.|.+|+..+..+. ..++ +|.+++|++++.. + .....+++++++++|+|+++.|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999998887764 4576 6889999765321 1 123567899999999999999855
Q ss_pred hhccccHHHHhccCCCcEEEEeCCC
Q 042102 213 TQHIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~rg 237 (317)
..++. +.+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999888753
No 202
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.24 E-value=0.00094 Score=63.02 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=60.6
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC-------------CCCc------cccCCHHHhc-ccCCEEEEecc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------------NLNY------KYYPNLIDLA-SNCQILVVACS 208 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~-------------~~~~------~~~~~l~el~-~~aDvV~~~lp 208 (317)
++|+|||.|.+|..+|..|...|.+|..|+|+.+. ..+. ....++.+.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 37999999999999999999999999999885420 0011 1234566665 58999999999
Q ss_pred CChhhhccccHHHHh-ccCCCcEEEEeCCCc
Q 042102 209 LTEETQHIVNRQVIN-ALGPKGVLINIGRGL 238 (317)
Q Consensus 209 ~~~~t~~li~~~~l~-~mk~gavlVN~~rg~ 238 (317)
... +..++ ++... .++++..+|.+.-|-
T Consensus 81 s~~-~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQQ-LRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HHH-HHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 443 33333 23333 566777777776664
No 203
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.23 E-value=0.0016 Score=68.24 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=78.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|+|||.|.||..+|..+...|++|..+|++++... + .....+++ .++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999998754210 0 01123454 5799
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEE-EeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLI-NIGRGLLVDEHELVSALLQGRLGGAGLDVFE 263 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV-N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~ 263 (317)
||+|+=++|-+-+.+.-+-++.=+.++++++|. |+|. ++...|.+.+.. +=+-.++..|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCC-ccceEEEeccC
Confidence 999999999888877766666667789999885 4433 555667766643 23334565553
No 204
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.22 E-value=0.0017 Score=59.28 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=63.1
Q ss_pred CeEEEEecChhHHHHHHHHhhC---CCEEE-EeCCCCCCC----CCccccCCHHHh-cccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF---DCIIG-YNSRTEKPN----LNYKYYPNLIDL-ASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~---G~~V~-~~~~~~~~~----~~~~~~~~l~el-~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
++|||||+|.||+.+++.+..- ++++. ++++..... .......+++++ ....|+|+=|..-.. +-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~a-----v~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQA-----IAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHH-----HHH
Confidence 5899999999999999998643 35554 556554221 123346789997 688999888865221 112
Q ss_pred HHHhccCCCcEEEEeCCCcccCH---HHHHHHHHh
Q 042102 220 QVINALGPKGVLINIGRGLLVDE---HELVSALLQ 251 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~---~aL~~al~~ 251 (317)
--.+.++.|.-++=.|-|.+.|. +.|.++.++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 22333556777777778888874 344454444
No 205
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.20 E-value=0.0024 Score=66.69 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=77.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|+|||.|.||+.+|..+...|++|..+|.+++... + .....++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998754210 0 0112345 45799
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF 262 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~ 262 (317)
||+|+=++|-+-+.+.-+-++.-+.++++++|....++ +....|.+.+.. +-+..++-.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecC
Confidence 99999999988887776666666778999988543332 444566666642 2233344444
No 206
>PRK06046 alanine dehydrogenase; Validated
Probab=97.18 E-value=0.00084 Score=63.59 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=61.5
Q ss_pred CCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
-+++||||.|.+|+..++.+. ..+. +|.+|+|+..... + .....+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 358999999999999998886 3455 5778998764321 1 123567888887 99999999865
Q ss_pred hccccHHHHhccCCCcEEEEeCC
Q 042102 214 QHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~r 236 (317)
..+|..+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 35677654 589999888874
No 207
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.17 E-value=0.00099 Score=61.90 Aligned_cols=91 Identities=15% Similarity=0.009 Sum_probs=61.2
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC-------------ccccCCHHHhcccCCEEEEeccCC
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN-------------YKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~-------------~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
.+.++++.|+|.|.+|++++..|...|+ +|.+++|+..+... .....++.+.++++|+|+.+.|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 3567899999999999999999999998 79999997643210 001234555678899999998853
Q ss_pred hh-hhc-cccHHHHhccCCCcEEEEeCCCc
Q 042102 211 EE-TQH-IVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 211 ~~-t~~-li~~~~l~~mk~gavlVN~~rg~ 238 (317)
-. ... .++. +.++++.+++|+.-.+
T Consensus 204 m~~~~~~~~~~---~~l~~~~~v~DivY~P 230 (284)
T PRK12549 204 MAKHPGLPLPA---ELLRPGLWVADIVYFP 230 (284)
T ss_pred CCCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence 11 111 1222 2356666777765544
No 208
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00075 Score=64.00 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=46.9
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc-------cccC---CHHHhcccCCEEEE
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY-------KYYP---NLIDLASNCQILVV 205 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-------~~~~---~l~el~~~aDvV~~ 205 (317)
++||||||-|..|+.|+...+.+|.+|.+.|+.++..... ..++ .+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999877654211 0122 47889999999965
No 209
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.12 E-value=0.003 Score=65.94 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=72.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLASN 199 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~~ 199 (317)
++|+|||.|.||..+|..+...|++|..+|++++... + .....++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999999999999998754210 0 0112344 45799
Q ss_pred CCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 200 CQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 200 aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
||+|+=++|-+-+.+.-+-++.-+.++|+++|-...+ -++...|...+.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~ 441 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALK 441 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcC
Confidence 9999999998888776555666677899999854333 245556666664
No 210
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.09 E-value=0.0033 Score=57.48 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCC-----CCcc--ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEE
Q 042102 163 IAKRAEAFD--CIIGYNSRTEKPN-----LNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLIN 233 (317)
Q Consensus 163 ~a~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN 233 (317)
+|+.|+..| .+|+++|+++... .+.. ...+ .+.++++|+|++|+|... +..++ ++....+++|+++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEE
Confidence 467777777 7999999876532 2222 1223 578999999999999654 33333 556667999999999
Q ss_pred eCCCcccCHHHHHHHHHhCCceEEEe-eCCCCCCCC----CcccCCCCceEEcccCC
Q 042102 234 IGRGLLVDEHELVSALLQGRLGGAGL-DVFEHEPDV----PEELIGLENVVLLPHVA 285 (317)
Q Consensus 234 ~~rg~~vd~~aL~~al~~g~i~ga~l-DV~~~EP~~----~~~L~~~pnvi~tPH~a 285 (317)
++.-..--.+++.+.+. ......+. =.|.+|-.. ...|+.--++++||+-.
T Consensus 78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 98755433344444444 22222221 123333211 12688888999999855
No 211
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.09 E-value=0.00098 Score=63.22 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=60.7
Q ss_pred cCCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC----------Cc--cccCCHHHhcccCCEEEEeccCChh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL----------NY--KYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+.. +. ....++++++++||+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35799999999999998888874 564 7899998854321 11 22467899999999999998864
Q ss_pred hhccccHHHHhccCCCcEEEEeC
Q 042102 213 TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~ 235 (317)
..++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34666544 57887766654
No 212
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.09 E-value=0.001 Score=62.64 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=54.5
Q ss_pred CeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCC--------C---CccccCCHHHhcccCCEEEEeccCChhhhc
Q 042102 149 KSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPN--------L---NYKYYPNLIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~--------~---~~~~~~~l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
+++||+|.|..|+.-++.+.. ++. +|.+|+|++... . ......+.++++++||+|+.+.|.+..+ .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 489999999999998887754 666 789999986431 1 1224578999999999999998866432 5
Q ss_pred cccHHHHhccCCCcEEEEeCCCcc
Q 042102 216 IVNRQVINALGPKGVLINIGRGLL 239 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~ 239 (317)
++..+ .+|||+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 67765 4689999999987544
No 213
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.08 E-value=0.0014 Score=57.92 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 141 KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
|+.-++.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45567999999999999999999999999999999988654
No 214
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.07 E-value=0.0015 Score=65.15 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=49.9
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc-----cccCCHHHh--cccCCEEEEeccCCh
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY-----KYYPNLIDL--ASNCQILVVACSLTE 211 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el--~~~aDvV~~~lp~~~ 211 (317)
..+.+++++|+|.|.+|++++..+...|++|.+++|+..+.... ....++.++ +.++|+|++|+|...
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~ 402 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSV 402 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCC
Confidence 45789999999999999999999999999999998865332110 011122222 568999999999653
No 215
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.04 E-value=0.0019 Score=60.82 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=66.2
Q ss_pred CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCC-CCC---CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTE-KPN---LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~-~~~---~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.+|||||+|+||+.+++.+... ++++. +++++. ... .+.....+.++++.+.|+|++|.|.... -+...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 6899999999999999999765 78865 578764 211 1222335677788999999999986533 13344
Q ss_pred hccCCCcEEEEeCCC--cccC-HHHHHHHHHh-CCce
Q 042102 223 NALGPKGVLINIGRG--LLVD-EHELVSALLQ-GRLG 255 (317)
Q Consensus 223 ~~mk~gavlVN~~rg--~~vd-~~aL~~al~~-g~i~ 255 (317)
..++.|.-+|+..-- .+-+ .+.+.++-++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 556777777777431 1112 2344444553 6665
No 216
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.03 E-value=0.0016 Score=52.40 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=53.1
Q ss_pred eEEEEe-cChhHHHHHHHHhhC-CCEEEEe-CCCCCCCCC-------cc-c-cCCHH-Hh--cccCCEEEEeccCChhhh
Q 042102 150 SVGILG-MGRIGTAIAKRAEAF-DCIIGYN-SRTEKPNLN-------YK-Y-YPNLI-DL--ASNCQILVVACSLTEETQ 214 (317)
Q Consensus 150 ~vgIiG-~G~iG~~~a~~l~~~-G~~V~~~-~~~~~~~~~-------~~-~-~~~l~-el--~~~aDvV~~~lp~~~~t~ 214 (317)
++||+| .|.+|+.+++.+... ++++... ++....... .. . ....+ +. ..++|+|++|+|......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999999874 7776544 432211100 00 0 01111 12 258999999999775433
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
.+. .....+++|.++|+++.
T Consensus 81 -~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 81 -IAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred -HHH-HHHhhhcCCCEEEECCc
Confidence 221 23456789999999973
No 217
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.01 E-value=0.0026 Score=59.94 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
-++++|+|.|..++.-++.+.. +.. +|.+|+|++.... + .....+.++++++||+|+++.+.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 4699999999999988887764 444 7999999875421 1 122567899999999999997744 4
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
.+|..+. +|||+.++.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 6777654 589999999974
No 218
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.01 E-value=0.0027 Score=58.34 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=62.1
Q ss_pred CeEEEEecChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-------CCccccCCHHHhcccCCEEEEeccCChhhhccccH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNR 219 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~ 219 (317)
++|||||+|.||+.+++.+... ++++. ++++..... .+.....+++++-.+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4899999999999999998765 45543 333322111 1233456788875569999999885432 1 2
Q ss_pred HHHhccCCCcEEEEeCCCcccCH---HHHHHHHHhCCce
Q 042102 220 QVINALGPKGVLINIGRGLLVDE---HELVSALLQGRLG 255 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg~~vd~---~aL~~al~~g~i~ 255 (317)
-....++.|.-++-.+-|.+.|. +.|.++.+++...
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 22333455555555555655554 3456666655544
No 219
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.99 E-value=0.0067 Score=56.68 Aligned_cols=109 Identities=9% Similarity=0.154 Sum_probs=75.4
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeC--CCCCCCCCccccCCHHHhcccCCEEEEeccCChhhh---c------
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNS--RTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ---H------ 215 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~--~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~---~------ 215 (317)
.|++++|||.=.=-..++++|.+.|++|.++. .......+.....+.+++++++|+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 37899999998888999999999999887543 222223455555677889999999999988754321 1
Q ss_pred -cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102 216 -IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF 262 (317)
Q Consensus 216 -li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~ 262 (317)
-++.+.++.|++|..++ +|.+..- +-+.+++.++. .+|..
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~--~~~~~ 121 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK--LVELF 121 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe--EEEEe
Confidence 13578899999998544 4443321 33556678887 34544
No 220
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.97 E-value=0.005 Score=64.23 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCCCC----------------CC-------------ccccCCHHHhcc
Q 042102 149 KSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPN----------------LN-------------YKYYPNLIDLAS 198 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~el~~ 198 (317)
++|+|||.|.||+.+|..+. ..|++|..+|.+++.. .+ .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999887 5899999999875321 00 0112344 4679
Q ss_pred cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102 199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF 262 (317)
Q Consensus 199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~ 262 (317)
.||+|+=++|-+.+.+.-+-++.-+.++++++|....++ +....|...+.. +=+..++--|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecC
Confidence 999999999998887766656666778999888543332 344456666632 2233455544
No 221
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.96 E-value=0.0039 Score=58.86 Aligned_cols=112 Identities=14% Similarity=0.175 Sum_probs=68.6
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCC-------------C--cc--ccCCHHHhcccCCEEEEec
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNL-------------N--YK--YYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~-------------~--~~--~~~~l~el~~~aDvV~~~l 207 (317)
+..++|+|||.|.+|..++..+...| .++..+|....... + .. ...+++ .++.||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999998778 58888887653211 0 01 124555 779999999998
Q ss_pred --cCChh-hh--------cccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHH--HhCCceEEE
Q 042102 208 --SLTEE-TQ--------HIVN--RQVINALGPKGVLINIGRGLLVDEHELVSAL--LQGRLGGAG 258 (317)
Q Consensus 208 --p~~~~-t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al--~~g~i~ga~ 258 (317)
|..+. ++ .++. .+.+....|.+++|+++-..=+-...+.+.- ...++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 43331 11 1110 1233445688999998653323333343332 135666555
No 222
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.96 E-value=0.0086 Score=62.56 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=77.3
Q ss_pred CeEEEEecChhHHHHHHHHh-hCCCEEEEeCCCCCCCC----------------C-------------ccccCCHHHhcc
Q 042102 149 KSVGILGMGRIGTAIAKRAE-AFDCIIGYNSRTEKPNL----------------N-------------YKYYPNLIDLAS 198 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~el~~ 198 (317)
++|+|||.|.||..+|..+. ..|+.|..+|.+++... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 78999999998654210 0 0112344 4579
Q ss_pred cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCC
Q 042102 199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVF 262 (317)
Q Consensus 199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~ 262 (317)
.||+|+=++|-+.+.+.-+-++.=+.++|+++|....++ +....|.+.+.. +-+.+++-.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecC
Confidence 999999999988887766656666778999998654433 455566666642 2233455544
No 223
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.96 E-value=0.0026 Score=59.68 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=69.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
++|+|||.|.+|..+|..+...|. +|..+|....... . .....+.++ +++||+|+++.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988775 8988887543210 0 011345666 79999999997732
Q ss_pred hh-----------hhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHH--HHhCCceEEE--ee
Q 042102 211 EE-----------TQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSA--LLQGRLGGAG--LD 260 (317)
Q Consensus 211 ~~-----------t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~a--l~~g~i~ga~--lD 260 (317)
.. +..++. .+.+....+++++|+++-..=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 111221 122333457899999876443334444444 4455666665 66
No 224
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.95 E-value=0.0015 Score=57.40 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=47.0
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCC
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ 227 (317)
++++|||. |.||+.++..++..|+.|. +++||+|++|+|.... . +.++.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~~~-~-----~~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPIDAA-L-----NYIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHHHH-H-----HHHHHhC-
Confidence 47999999 9999999999999999885 4689999999995532 2 2333333
Q ss_pred CcEEEEeCCCc
Q 042102 228 KGVLINIGRGL 238 (317)
Q Consensus 228 gavlVN~~rg~ 238 (317)
.+++|++.-.
T Consensus 53 -~~v~Dv~SvK 62 (197)
T PRK06444 53 -NNFVEISSVK 62 (197)
T ss_pred -CeEEeccccC
Confidence 3788997633
No 225
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0027 Score=60.10 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=65.8
Q ss_pred CeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102 149 KSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
+++||||.|..++.-++.++. ++. +|.+|+|+++... + .....+.+++++.||+|+.+.|.++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 489999999999999988864 666 6899999875421 1 2346789999999999999999775
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
.++..+. +|||+.+..+|.
T Consensus 208 Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred CeecHhh---cCCCcEEEecCC
Confidence 6777766 479999999984
No 226
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.92 E-value=0.0058 Score=49.53 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=56.0
Q ss_pred CeEEEEec-ChhHHHHHHHHhh-CCCEE-EEeCCCCCC-------------CCCccccCCHHHhcccCCEEEEeccCChh
Q 042102 149 KSVGILGM-GRIGTAIAKRAEA-FDCII-GYNSRTEKP-------------NLNYKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~-~G~~V-~~~~~~~~~-------------~~~~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
++|+|+|+ |+||+.+++.+.. -|+++ .++++.... ..+.....++++++.++|+++-.. +++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 37999999 9999999999987 77885 466666521 122334578999999999887764 333
Q ss_pred -hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102 213 -TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249 (317)
Q Consensus 213 -t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al 249 (317)
+...+ +.. ++.|.-+|-...|---++.+.++.+
T Consensus 79 ~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 79 AVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred HhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHH
Confidence 22211 222 3345556655555533333444443
No 227
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.92 E-value=0.0017 Score=62.80 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=65.8
Q ss_pred CCeEEEEecChhHHHHHHHHhh-CC-C-EEEEeCCCCCCC----------C-C---ccccCCHHHhcccCCEEEEeccCC
Q 042102 148 GKSVGILGMGRIGTAIAKRAEA-FD-C-IIGYNSRTEKPN----------L-N---YKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~-~G-~-~V~~~~~~~~~~----------~-~---~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
-+++||||.|..++.-++.+.. +. . +|.+|+|++... . + .....+.++++++||+|+.+.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3689999999999999888775 43 4 799999986431 0 1 223578999999999999998764
Q ss_pred h---hhhccccHHHHhccCCCcEEEEeCCCc
Q 042102 211 E---ETQHIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 211 ~---~t~~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
. ++..+|..+. +|||+.++.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 3456777654 57999887776543
No 228
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.0016 Score=60.69 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=34.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
.|+.+||+|+|.+|+.-.+.+++||++|+++|++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999998763
No 229
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.86 E-value=0.0023 Score=58.57 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=70.6
Q ss_pred EEEEec-ChhHHHHHHHHhhCC----CEEEEeCCCCCCCCC----------------ccccCCHHHhcccCCEEEEeccC
Q 042102 151 VGILGM-GRIGTAIAKRAEAFD----CIIGYNSRTEKPNLN----------------YKYYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 151 vgIiG~-G~iG~~~a~~l~~~G----~~V~~~~~~~~~~~~----------------~~~~~~l~el~~~aDvV~~~lp~ 209 (317)
|+|||. |.+|..++..+...| .+|..+|...+...+ .....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 588889876543210 01134567889999999996422
Q ss_pred C--h---------hhhcccc--HHHHhccCCCcEEEEeCCCcccCHH--HHHHH--HHhCCceEEE-eeCC
Q 042102 210 T--E---------ETQHIVN--RQVINALGPKGVLINIGRGLLVDEH--ELVSA--LLQGRLGGAG-LDVF 262 (317)
Q Consensus 210 ~--~---------~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~--aL~~a--l~~g~i~ga~-lDV~ 262 (317)
. + .+..++. .+.+....|+++++|.+ ..+|.- .+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 1 1 0111111 12333445899999995 444443 34344 4567788888 7753
No 230
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.86 E-value=0.0059 Score=60.05 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=70.5
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEe-CCCC-----CC---------------C-CCcc-----ccCCHHH
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN-SRTE-----KP---------------N-LNYK-----YYPNLID 195 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~-~~~~-----~~---------------~-~~~~-----~~~~l~e 195 (317)
+.++.|++|.|.|+|++|+.+|+.|..+|++|++. |.+. +. . .++. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 34689999999999999999999999999999876 4211 00 0 0000 0112333
Q ss_pred hcc-cCCEEEEeccCChhhhccccHHHHhccC--CCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 196 LAS-NCQILVVACSLTEETQHIVNRQVINALG--PKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 196 l~~-~aDvV~~~lp~~~~t~~li~~~~l~~mk--~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
++. .||+++-|.. .+.|+.+....++ .-.+++-.+-|.+ . ..-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t-~~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-T-PEAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-C-HHHHHHHHHCCcE
Confidence 333 6998888764 5668877777663 2345666777777 3 3455777777776
No 231
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0025 Score=61.53 Aligned_cols=84 Identities=10% Similarity=0.149 Sum_probs=59.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCC-CEEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD-CIIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
++|.|||.|.||+.+|..|..-| .+|++-||+..+... ......+.+++++.|+|+.++|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 58999999999999999999988 899999998543210 1112357788888899999888542
Q ss_pred hhccccHHHH-hccCCCcEEEEeCCCc
Q 042102 213 TQHIVNRQVI-NALGPKGVLINIGRGL 238 (317)
Q Consensus 213 t~~li~~~~l-~~mk~gavlVN~~rg~ 238 (317)
+...+ ..++.|.-.++++-.+
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCC
Confidence 22333 3345666667766544
No 232
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.011 Score=56.68 Aligned_cols=131 Identities=10% Similarity=0.162 Sum_probs=85.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CC-------------ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LN-------------YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~el~~~aDvV 203 (317)
++|.|+|.|-+|...+..+..+|.+|+.+|..+.+- ++ ..+..+.++.++.+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 589999999999999999999999999998654320 10 22346788899999999
Q ss_pred EEeccCChhhhcccc--------HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeC-CCCCCCCCc----
Q 042102 204 VVACSLTEETQHIVN--------RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV-FEHEPDVPE---- 270 (317)
Q Consensus 204 ~~~lp~~~~t~~li~--------~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV-~~~EP~~~~---- 270 (317)
++++|-.+.-.|-++ ++..+.++..+++|+=|.-.+=-.+.+.+-+....-.. -++| +.+|=+-..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999986655445444 34555677669999988755544444444443333211 2332 344444332
Q ss_pred ccCCCCceEE
Q 042102 271 ELIGLENVVL 280 (317)
Q Consensus 271 ~L~~~pnvi~ 280 (317)
..+..+++++
T Consensus 160 D~~~PdRIVi 169 (414)
T COG1004 160 DFLYPDRIVI 169 (414)
T ss_pred hccCCCeEEE
Confidence 3555566664
No 233
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.79 E-value=0.0038 Score=59.58 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCeEEEEecChhHHHHHHHHh-hCCC-EEEEeCCCCCCCC---------C--ccccCCHHHhcccCCEEEEeccCChhhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAE-AFDC-IIGYNSRTEKPNL---------N--YKYYPNLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
-++++|||.|..++.-++.+. -+.. +|.+|+|++.... + .....++++++++||+|+++.|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 368999999999988877554 4555 6899999865421 1 2235789999999999999987432 22
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
-+|..+. +|||+.+.-+|.
T Consensus 208 Pvl~~~~---lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVGG 226 (346)
T ss_pred ceecHHH---cCCCcEEEecCC
Confidence 4566654 589998877764
No 234
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.78 E-value=0.0059 Score=57.21 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCeEEEEecChhHHHHHHHHhh-CCC-EEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEeccCChhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEA-FDC-IIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
-+++||||.|..|+.-++.+.. +.. +|.+|+|++.... + .....+.++++.+||+|+.+.+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4699999999999988877764 455 7999999865421 1 223568999999999999988844
Q ss_pred hccccHHHHhccCCCcEEEEeCCC
Q 042102 214 QHIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~rg 237 (317)
..+|..+. +|||+.+.-+|..
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs~ 214 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGSN 214 (301)
T ss_pred CcEecHHH---cCCCceEEecCCC
Confidence 46777664 5789887777653
No 235
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.77 E-value=0.0084 Score=50.79 Aligned_cols=89 Identities=9% Similarity=0.152 Sum_probs=65.7
Q ss_pred cCCeEEEEe--cChhHHHHHHHHhhCCCEEEEeCCCCC--CC----------------CCccccCCHHHhcccCCEEEEe
Q 042102 147 TGKSVGILG--MGRIGTAIAKRAEAFDCIIGYNSRTEK--PN----------------LNYKYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 147 ~g~~vgIiG--~G~iG~~~a~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~el~~~aDvV~~~ 206 (317)
.|+||++|| -+++.++++..+..||+++.+..+..- +. .......++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 488999999 389999999999999999988877551 11 0123457899999999998776
Q ss_pred ccC----Chh-------hhccccHHHHhccCCCcEEEEeC
Q 042102 207 CSL----TEE-------TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 207 lp~----~~~-------t~~li~~~~l~~mk~gavlVN~~ 235 (317)
.-. .+. ....++++.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 443 111 11457899999999999999885
No 236
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.026 Score=55.49 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=68.3
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC--------------------c-----cccCC
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN--------------------Y-----KYYPN 192 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~--------------------~-----~~~~~ 192 (317)
+.+|.|++|.|.|+|++|+..|+.|..+|++|++.+.+.... .. + ....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 457899999999999999999999999999998744321100 00 0 00112
Q ss_pred HHHhc-ccCCEEEEeccCChhhhccccHHHHhccCC-CcEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102 193 LIDLA-SNCQILVVACSLTEETQHIVNRQVINALGP-KGVLINI-GRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 193 l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk~-gavlVN~-~rg~~vd~~aL~~al~~g~i~ 255 (317)
.++++ ..||+++-|. +.+.|+++..+.++. |..+|-- +.| ++..++. +.|.++.|.
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 23332 4588777663 467889888888864 4444444 555 6665555 455555554
No 237
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.75 E-value=0.0022 Score=51.61 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=50.3
Q ss_pred eEEEEe-cChhHHHHHHHHhh-CCCEEE-EeCCCCCCCCC----------c---cccCCHHHhcccCCEEEEeccCChhh
Q 042102 150 SVGILG-MGRIGTAIAKRAEA-FDCIIG-YNSRTEKPNLN----------Y---KYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 150 ~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~~~----------~---~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
+||||| .|.+|+.+.++|.. ..+++. +++++...... . .....-.+.+..+|+|++|+|.....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 699999 99999999999976 345543 44544411110 0 00111223459999999998854332
Q ss_pred hccccHHHHhccCCCcEEEEeCC
Q 042102 214 QHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~r 236 (317)
+ +.... .++|..+|+.+.
T Consensus 81 ~--~~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 81 E--LAPKL---LKAGIKVIDLSG 98 (121)
T ss_dssp H--HHHHH---HHTTSEEEESSS
T ss_pred H--HHHHH---hhCCcEEEeCCH
Confidence 2 22222 578999999874
No 238
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.75 E-value=0.0033 Score=53.25 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=36.7
Q ss_pred ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
+|+.-+++|++|.|||.|.+|...++.|...|++|.++++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 45667899999999999999999999999999999988654
No 239
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.73 E-value=0.042 Score=48.58 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=36.9
Q ss_pred cccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 141 KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
|+.-++.|++|.|||.|.+|..-++.|..+|++|.++++...
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 344568999999999999999999999999999999987543
No 240
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.70 E-value=0.0023 Score=50.86 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=64.3
Q ss_pred eEEEEecChhHHHHHHHHhhC--CCEE-EEeCCCCCCC------CCccccCCHHHhcc--cCCEEEEeccCChhhhcccc
Q 042102 150 SVGILGMGRIGTAIAKRAEAF--DCII-GYNSRTEKPN------LNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~--G~~V-~~~~~~~~~~------~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~ 218 (317)
++||||+|.+|+.....+... ++++ .++|+++... .+...+.+++++++ +.|+|+++.|...... +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 799999999999998888766 4565 4778765432 23446788999988 7999999999654322 12
Q ss_pred HHHHhccCCC-cEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102 219 RQVINALGPK-GVLINI-GRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 219 ~~~l~~mk~g-avlVN~-~rg~~vd~~aL~~al~~g~i~ 255 (317)
... ++.| .+++.- ---.+-+.+.|.++.++.+..
T Consensus 80 ~~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 80 KKA---LEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 222 3333 444442 111333555666666555443
No 241
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.69 E-value=0.0036 Score=55.16 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=33.4
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999998 78888765
No 242
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.64 E-value=0.034 Score=50.63 Aligned_cols=175 Identities=16% Similarity=0.125 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-----------EEEE
Q 042102 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-----------IIGY 176 (317)
Q Consensus 108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-----------~V~~ 176 (317)
+|=-+++-+|+.+|-. +..|...++.|+|.|..|-.+|+.+...+. +++.
T Consensus 4 TaaV~lAgllnAlk~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~ 64 (254)
T cd00762 4 TASVAVAGLLAALKVT-------------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWX 64 (254)
T ss_pred hHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEE
Confidence 3445677777776632 346788999999999999999999987665 5777
Q ss_pred eCCCCC-----C-CC----C---c----cccCCHHHhcc--cCCEEEEeccCChhhhccccHHHHhccC---CCcEEEEe
Q 042102 177 NSRTEK-----P-NL----N---Y----KYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQVINALG---PKGVLINI 234 (317)
Q Consensus 177 ~~~~~~-----~-~~----~---~----~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~gavlVN~ 234 (317)
+|+..- . .. . + ....+|.|+++ +.|+++-..- ..|+|.++.++.|. +.+++.=.
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 65 VDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred ECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 776421 0 00 0 1 12358999999 9998876532 34789999999999 89999999
Q ss_pred CCCccc---CHHHHHHHHHhCCceEEEeeCCCCCCCCCc---ccCCCCceEEcccCCCccHHH-----HHHHHHHHHHHH
Q 042102 235 GRGLLV---DEHELVSALLQGRLGGAGLDVFEHEPDVPE---ELIGLENVVLLPHVASATVET-----RKAMADLVVGNL 303 (317)
Q Consensus 235 ~rg~~v---d~~aL~~al~~g~i~ga~lDV~~~EP~~~~---~L~~~pnvi~tPH~a~~t~~~-----~~~~~~~~~~nl 303 (317)
|....- ..++.+++=+...|.+.+.-.+..+- +. ..-+..|+++-|=++-..-.+ -+.|.-.+++.|
T Consensus 141 SNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aL 218 (254)
T cd00762 141 SNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAI 218 (254)
T ss_pred CCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHH
Confidence 887663 33333333222234433221111111 11 244778999999877432211 244444445555
Q ss_pred HHHH
Q 042102 304 QAHF 307 (317)
Q Consensus 304 ~~~~ 307 (317)
-++.
T Consensus 219 A~~v 222 (254)
T cd00762 219 ASSV 222 (254)
T ss_pred HhhC
Confidence 4443
No 243
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.56 E-value=0.013 Score=53.28 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=58.9
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPK 228 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g 228 (317)
.++-|+|.|.+++.+++.++.+|++|.++|..+..... .....++.+....| .+.+..+.++
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~~~ 162 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--------DLPDGVATLVTDEP----------EAEVAEAPPG 162 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--------cCCCCceEEecCCH----------HHHHhcCCCC
Confidence 48999999999999999999999999998865431111 11123333222212 1222234567
Q ss_pred cEEEEeCCCcccCHHHHHHHHHhCCc
Q 042102 229 GVLINIGRGLLVDEHELVSALLQGRL 254 (317)
Q Consensus 229 avlVN~~rg~~vd~~aL~~al~~g~i 254 (317)
..+|=+.++.-.|.+.|..+|.+...
T Consensus 163 t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 163 SYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 77777778888898888888854444
No 244
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.53 E-value=0.075 Score=49.10 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhC----CC-------EEEE
Q 042102 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF----DC-------IIGY 176 (317)
Q Consensus 108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~ 176 (317)
+|=-+++-+|+.+|-. +..|...+|.|+|.|..|-.+|+.+... |+ +++.
T Consensus 4 Ta~V~lAgllnAlk~~-------------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~ 64 (279)
T cd05312 4 TAAVALAGLLAALRIT-------------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWL 64 (279)
T ss_pred HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEE
Confidence 4455677777776643 3467889999999999999999999876 76 6888
Q ss_pred eCCCCC-----CCC-C----c----c--ccCCHHHhcc--cCCEEEEeccCChhhhccccHHHHhccC---CCcEEEEeC
Q 042102 177 NSRTEK-----PNL-N----Y----K--YYPNLIDLAS--NCQILVVACSLTEETQHIVNRQVINALG---PKGVLINIG 235 (317)
Q Consensus 177 ~~~~~~-----~~~-~----~----~--~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~gavlVN~~ 235 (317)
+|+..- ... . + . ...+|.|+++ ++|+++-+-- .-|+|+++.++.|. +.+++.=.|
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 65 VDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred EcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 886521 100 0 0 1 2357999999 8898877522 24789999999998 899999999
Q ss_pred CCcccCHHHHHHHHH--hCC-ceEEEeeCCCCCCCC-CcccCCCCceEEcccCCCccHH-----HHHHHHHHHHHHHHHH
Q 042102 236 RGLLVDEHELVSALL--QGR-LGGAGLDVFEHEPDV-PEELIGLENVVLLPHVASATVE-----TRKAMADLVVGNLQAH 306 (317)
Q Consensus 236 rg~~vd~~aL~~al~--~g~-i~ga~lDV~~~EP~~-~~~L~~~pnvi~tPH~a~~t~~-----~~~~~~~~~~~nl~~~ 306 (317)
....--|-.-.++.+ +|+ |.+.+.-.-+-+... ....-+..|+++-|=++-..-. .-+.|...+++.|-++
T Consensus 141 NPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~ 220 (279)
T cd05312 141 NPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASL 220 (279)
T ss_pred CcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHh
Confidence 876533322223333 355 443331110001000 0134567899999987743221 1245555555555554
Q ss_pred HC
Q 042102 307 FG 308 (317)
Q Consensus 307 ~~ 308 (317)
..
T Consensus 221 ~~ 222 (279)
T cd05312 221 VT 222 (279)
T ss_pred CC
Confidence 43
No 245
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.51 E-value=0.0081 Score=56.82 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEEec
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~~l 207 (317)
+..++|+|||.|.+|..+|..+...|. +|..+|.+++... + .....+. +.++.||+|+.+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999887785 8888997765210 0 0112455 5679999999975
Q ss_pred cCCh----------------hhhcccc--HHHHhccCCCcEEEEeCCCcccCHHHHHHHHH--hCCceEEE
Q 042102 208 SLTE----------------ETQHIVN--RQVINALGPKGVLINIGRGLLVDEHELVSALL--QGRLGGAG 258 (317)
Q Consensus 208 p~~~----------------~t~~li~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~--~g~i~ga~ 258 (317)
-... .+..++. .+.+....|.++++|++-..=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 2211 1111111 11233345778999987433222333333321 34666666
No 246
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.51 E-value=0.0078 Score=58.84 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=63.2
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc-----cccCCHHHhcccCCEEEEeccCChhhh--------
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY-----KYYPNLIDLASNCQILVVACSLTEETQ-------- 214 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~el~~~aDvV~~~lp~~~~t~-------- 214 (317)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ......+....++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 3689999999999999999999999999999765422110 011223344577998888765443211
Q ss_pred --ccccHHHH--hc--cCCC-cEEEEeCCCcccCHHHHHHHHHhC
Q 042102 215 --HIVNRQVI--NA--LGPK-GVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 215 --~li~~~~l--~~--mk~g-avlVN~~rg~~vd~~aL~~al~~g 252 (317)
.++....+ .. +.+. .+=|--+.|..--.+-|.+.|+..
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 12222121 11 2122 233444567777666777777653
No 247
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.51 E-value=0.017 Score=52.91 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=44.9
Q ss_pred CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-----CCccccCCHHHhcccCCEEEEecc
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp 208 (317)
.+|+|+|+ |.||+.+++.+... ++++. ++++..... .+.....+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 48999998 99999999988764 68765 577654322 122345789999989999997765
No 248
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.50 E-value=0.0081 Score=54.60 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=69.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEe--------CCCCCC---------C-CC-cccc----------CCHH-
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYN--------SRTEKP---------N-LN-YKYY----------PNLI- 194 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~--------~~~~~~---------~-~~-~~~~----------~~l~- 194 (317)
++.|+++.|-|+|++|+.+|+.|...|++|++. ++..-. . .. ...+ .+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 221100 0 00 0001 1121
Q ss_pred Hhc-ccCCEEEEeccCChhhhccccHHHHh-ccCCCcEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102 195 DLA-SNCQILVVACSLTEETQHIVNRQVIN-ALGPKGVLINI-GRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 195 el~-~~aDvV~~~lp~~~~t~~li~~~~l~-~mk~gavlVN~-~rg~~vd~~aL~~al~~g~i~ 255 (317)
+++ ..||+++.|. ..+.|+++... .++.++-+|-- +.+.+ ..++.. .|.+..|.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence 444 5899999882 35678888888 88877665554 55555 455554 88888886
No 249
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.50 E-value=0.011 Score=53.97 Aligned_cols=96 Identities=22% Similarity=0.189 Sum_probs=66.1
Q ss_pred ccccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCC-----------CCCccccCCHHHhcccCCEEEEeccC
Q 042102 142 MTTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKP-----------NLNYKYYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 142 ~~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~~l~el~~~aDvV~~~lp~ 209 (317)
+|.+++..|++|+|+ |.||..+|+-|.+.+++....-|.... ..+.....+++..+.+.|+++.....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 578899999999997 999999999999988866544432211 11223345666666666655544332
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCCCcccCH
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGRGLLVDE 242 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~ 242 (317)
. +-..|+... +|||+++|+-++..=||+
T Consensus 241 ~--~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 241 P--KGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred C--CCceechhh---ccCCeEEEcCCcCccccc
Confidence 2 334577755 699999999998877775
No 250
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.48 E-value=0.059 Score=53.04 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=90.2
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEE--------eCCCCCCC-C--------------------Cc--cccC
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGY--------NSRTEKPN-L--------------------NY--KYYP 191 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~--------~~~~~~~~-~--------------------~~--~~~~ 191 (317)
+.++.|+||.|=|+|++|+.+|+.|..+|++|++ |++..-.. . .+ ....
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4568999999999999999999999999999987 45321100 0 00 0011
Q ss_pred CHHHhc-ccCCEEEEeccCChhhhccccHHHHhccC-C-CcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCC
Q 042102 192 NLIDLA-SNCQILVVACSLTEETQHIVNRQVINALG-P-KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV 268 (317)
Q Consensus 192 ~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk-~-gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~ 268 (317)
+.++++ ..||+++-|. +.+.|+++..+.+. . -.+++--+-+ ++..++- +.|.+..|. ++=|+.-+-=..
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGGV 374 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGGV 374 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCCe
Confidence 223333 3588777663 57788888887773 2 3445666667 5655543 667777776 333433221100
Q ss_pred CcccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHH
Q 042102 269 PEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307 (317)
Q Consensus 269 ~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~ 307 (317)
-...++-+--.-|.-|..++..+++.+.+.+.+.+.+
T Consensus 375 --ivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 375 --ATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred --eeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0011111122245556666666666666665555544
No 251
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.46 E-value=0.0025 Score=59.19 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=47.2
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC----------cccc---CCHHHhcccCCEEEEeccCC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN----------YKYY---PNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~----------~~~~---~~l~el~~~aDvV~~~lp~~ 210 (317)
+.|+++.|||.|.+|++++..|...|+ +|.+++|+..+... .... .++.+.+.++|+|+.+.|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 678899999999999999999999998 69999997543210 0001 12334556778888887754
No 252
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.45 E-value=0.026 Score=55.51 Aligned_cols=106 Identities=13% Similarity=0.084 Sum_probs=67.7
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEE-EeCCCC-----CCC-------------------CCcc------ccC
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIG-YNSRTE-----KPN-------------------LNYK------YYP 191 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~-~~~~~~-----~~~-------------------~~~~------~~~ 191 (317)
+.++.|+||.|=|+|++|+.+|+.|..+|++|+ +.|.+. +.. ..+. ...
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 456899999999999999999999999999988 444431 000 0000 001
Q ss_pred CHHHhc-ccCCEEEEeccCChhhhccccHHHHhcc-CCCcEEEEe-CCCcccCHHHHHHHHHhCCce
Q 042102 192 NLIDLA-SNCQILVVACSLTEETQHIVNRQVINAL-GPKGVLINI-GRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 192 ~l~el~-~~aDvV~~~lp~~~~t~~li~~~~l~~m-k~gavlVN~-~rg~~vd~~aL~~al~~g~i~ 255 (317)
+.++++ -.||+.+-|. +.+.|+.+..+.+ +.++.+|-= +-+.+-. + -.+.|++..|.
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~ 371 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI 371 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE
Confidence 112222 3688777663 5778888877766 556665554 4555543 3 44667777775
No 253
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.42 E-value=0.017 Score=53.70 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=33.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~ 181 (317)
.+.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36789999999999999999999999995 99999875
No 254
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.42 E-value=0.012 Score=55.08 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=59.4
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------Cc--cccCCHHHhcccCCEEEEeccCCh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------NY--KYYPNLIDLASNCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~~--~~~~~l~el~~~aDvV~~~lp~~~ 211 (317)
++|+|||.|.+|+.+|..|...|. +|..+|+..+... .. .....-.+.++.||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 489999999999999999998884 7999998665321 00 011122345789999999876421
Q ss_pred h---hh--------cccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102 212 E---TQ--------HIVN--RQVINALGPKGVLINIGRGLLVDE 242 (317)
Q Consensus 212 ~---t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~ 242 (317)
. ++ .++. .+.+....|.+++++++ ..+|.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~ 122 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV 122 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence 1 11 1111 12344456789999986 44443
No 255
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.012 Score=56.79 Aligned_cols=102 Identities=17% Similarity=0.291 Sum_probs=70.2
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------------------C------CCccccCCHHHhc-
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------------------N------LNYKYYPNLIDLA- 197 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------------------~------~~~~~~~~l~el~- 197 (317)
+.+|.|+||.|=|+|++|+.+|+.|...|.+|++.+.+... . .+... .+-++++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~-i~~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEY-ITNEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceE-cccccccc
Confidence 34589999999999999999999999999999887765430 0 01111 1224443
Q ss_pred ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 198 SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 198 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
..||+++-| ++.+.|+.+..+++|-. +++--+.|++-. ++--..++.|
T Consensus 281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~-eA~~i~~erG 328 (411)
T COG0334 281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP-EADEILLERG 328 (411)
T ss_pred ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH-HHHHHHHHCC
Confidence 468876655 35778998888888865 777888888653 3333333444
No 256
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.41 E-value=0.0075 Score=57.43 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=33.2
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999998 78877764
No 257
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.38 E-value=0.032 Score=53.96 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=112.2
Q ss_pred hCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCC
Q 042102 92 EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD 171 (317)
Q Consensus 92 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G 171 (317)
+..|+|.|..= .-+|=.+++.+++.+|-. ++.|+..+|.+.|.|..|-.+++.+++.|
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~~-------------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALKLT-------------------GKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHHHh-------------------CCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 35788888754 334555677777765433 56788999999999999999999999999
Q ss_pred C---EEEEeCCCCCC---CC-----Ccc---------ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEE
Q 042102 172 C---IIGYNSRTEKP---NL-----NYK---------YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL 231 (317)
Q Consensus 172 ~---~V~~~~~~~~~---~~-----~~~---------~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl 231 (317)
+ +|+.+|+..-- .. ... .... ++.+..+|+++-+-- .|.|.++.++.|.+.+++
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~~PiI 296 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAKHPII 296 (432)
T ss_pred CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhccCCEE
Confidence 8 58888865211 10 000 0111 457889998776622 289999999999999999
Q ss_pred EEeCCCcccCHHHHHHHHHhC-CceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHH-----HHHHHHHHHHHHHH
Q 042102 232 INIGRGLLVDEHELVSALLQG-RLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVET-----RKAMADLVVGNLQA 305 (317)
Q Consensus 232 VN~~rg~~vd~~aL~~al~~g-~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~-----~~~~~~~~~~nl~~ 305 (317)
.=+|....--....+.....| .|-+. ..|..|. +..|+++-|-++-.--.+ -+.|.-.+++-|-.
T Consensus 297 falaNP~pEi~Pe~a~~~~~~aaivaT------Grsd~Pn---QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 297 FALANPTPEITPEDAKEWGDGAAIVAT------GRSDYPN---QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred eecCCCCccCCHHHHhhcCCCCEEEEe------CCCCCcc---cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 988876532111112222222 34322 2222222 888999999987432222 24444444555555
Q ss_pred HH
Q 042102 306 HF 307 (317)
Q Consensus 306 ~~ 307 (317)
+.
T Consensus 368 ~~ 369 (432)
T COG0281 368 LA 369 (432)
T ss_pred hc
Confidence 43
No 258
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.37 E-value=0.014 Score=55.06 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=57.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC--------------ccccCCHHHhcccCCEEEEeccCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN--------------YKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
.+++|+|||.|.+|..+|-.+...|. ++..+|.......+ .....+-.+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 56799999999999999999988887 78899976543210 011112345689999999875431
Q ss_pred h---hhh--------cccc--HHHHhccCCCcEEEEeC
Q 042102 211 E---ETQ--------HIVN--RQVINALGPKGVLINIG 235 (317)
Q Consensus 211 ~---~t~--------~li~--~~~l~~mk~gavlVN~~ 235 (317)
. .++ .++. .+.+..-.+.+++++++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1 111 1111 11222234688999987
No 259
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.32 E-value=0.0012 Score=58.68 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=74.2
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------------------C--c-------------cccC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------------------N--Y-------------KYYP 191 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------------------~--~-------------~~~~ 191 (317)
-.-+.|+|||.|.||+.+|+.+..-|..|..+|++.+... . . ....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 3446899999999999999999999999999998764310 0 0 0123
Q ss_pred CHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCC
Q 042102 192 NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVL-INIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP 266 (317)
Q Consensus 192 ~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP 266 (317)
++.++++.+|+|+=++--+-..+.-+-++.=..+|+.+++ -|+|+ .....+..+++.... .++|-.|.+-|
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP 160 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP 160 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch
Confidence 4556667777666554433333322223333346777776 46655 344556666655444 46888887655
No 260
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.31 E-value=0.061 Score=50.49 Aligned_cols=90 Identities=10% Similarity=0.145 Sum_probs=64.2
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----------CC--ccccCCHHHhcccCCEEEEec----
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----------LN--YKYYPNLIDLASNCQILVVAC---- 207 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----------~~--~~~~~~l~el~~~aDvV~~~l---- 207 (317)
+.|++|+++|= +++.++.+..+..+|++|.+..+..-.. .+ .....++++.++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 78899999998 7899999999999999998887643211 11 223578999999999998741
Q ss_pred cCC---hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102 208 SLT---EE-----TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 208 p~~---~~-----t~~li~~~~l~~mk~gavlVN~~ 235 (317)
... .+ -..-++++.++.+|++++|.-+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 110 11 12345777777788888777764
No 261
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.31 E-value=0.0071 Score=53.68 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=61.8
Q ss_pred ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------C---ccccCCHHHhcccCCEEEEeccC
Q 042102 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------N---YKYYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~---~~~~~~l~el~~~aDvV~~~lp~ 209 (317)
.+..-++.|++|.|||.|.+|..=++.+...|++|+++++...+.. . .....+.++ +..+++|+.+++.
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d 82 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDD 82 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCC
Confidence 3456689999999999999999999999999999999987662210 0 011122333 3337888877664
Q ss_pred ChhhhccccHHHHhccCCCcEEEEe
Q 042102 210 TEETQHIVNRQVINALGPKGVLINI 234 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~ 234 (317)
.+ +|++.+..+++-.++||+
T Consensus 83 ~~-----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 83 EE-----LNERIAKAARERRILVNV 102 (210)
T ss_pred HH-----HHHHHHHHHHHhCCceec
Confidence 33 456666666666677776
No 262
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.28 E-value=0.0084 Score=53.78 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=58.4
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC-------------CCC-----------------c--c--
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP-------------NLN-----------------Y--K-- 188 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~-- 188 (317)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-. ..+ . .
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46889999999999999999999999998 67777643210 000 0 0
Q ss_pred --c--cCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 189 --Y--YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 189 --~--~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
. ..++.++++++|+|+.|+. +.+++.++++...+ .+.-+|..+
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 0 1234567888998887765 55666666654443 344566654
No 263
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.27 E-value=0.03 Score=52.55 Aligned_cols=89 Identities=9% Similarity=0.156 Sum_probs=61.9
Q ss_pred ccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCccccCCHHHhcccCCEEEEeccCC--------h
Q 042102 146 FTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNYKYYPNLIDLASNCQILVVACSLT--------E 211 (317)
Q Consensus 146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~el~~~aDvV~~~lp~~--------~ 211 (317)
+.|++|+++|= +++.++++..+..||+++.+..+..-.. .......+++++++.+|+|....=.. +
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~ 233 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLP 233 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchH
Confidence 78999999998 5899999999999999998887644221 11234678999999999887743110 0
Q ss_pred h-----hhccccHHHHhccCCCcEEEEe
Q 042102 212 E-----TQHIVNRQVINALGPKGVLINI 234 (317)
Q Consensus 212 ~-----t~~li~~~~l~~mk~gavlVN~ 234 (317)
+ -...++++.++.+|++++|.-+
T Consensus 234 ~~~~~~~~y~v~~~ll~~a~~~~~~mHc 261 (305)
T PRK00856 234 SYEEYKRSYGLTAERLALAKPDAIVMHP 261 (305)
T ss_pred HHHHHhccCccCHHHHhhcCCCCEEECC
Confidence 0 0123456666666666666655
No 264
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.21 E-value=0.0091 Score=57.51 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=44.2
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCC----cc---ccC---CHHHhcccCCEEEE
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLN----YK---YYP---NLIDLASNCQILVV 205 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~----~~---~~~---~l~el~~~aDvV~~ 205 (317)
.++|||||.|..|+.++..++.+|++|+++++.+..... .. .+. .+.++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999886544211 00 122 36678889998764
No 265
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.0096 Score=58.94 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=66.8
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCccc--cCCHHHhcccCCEEEEeccCChh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKY--YPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~--~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|...... .+... .....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 4678899999999999999999999999999999764321 11111 11223546789988887 43222
Q ss_pred hh-----------ccccHH-HHhcc-CCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102 213 TQ-----------HIVNRQ-VINAL-GPKGVLINIGRGLLVDEHELVSALLQGR 253 (317)
Q Consensus 213 t~-----------~li~~~-~l~~m-k~gavlVN~~rg~~vd~~aL~~al~~g~ 253 (317)
+. .++++- .+.+. +...+-|--+.|..--.+-+.+.|....
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 11 122221 22222 2223344445688777777777776533
No 266
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.19 E-value=0.13 Score=53.98 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=105.8
Q ss_pred CCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC
Q 042102 93 KGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC 172 (317)
Q Consensus 93 ~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~ 172 (317)
..|+|.|..- .-+|=-+++.+++.+|-. ++.+...+|.|.|.|..|-.+++.+...|.
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALELV-------------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 3689988743 334555777777776633 346888899999999999999999999998
Q ss_pred ---EEEEeCCCCC----C---CCC-------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 173 ---IIGYNSRTEK----P---NLN-------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 173 ---~V~~~~~~~~----~---~~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
+++.+|+..- . ... .....+|.|+++.+|+++-. . +.|+|.++.++.|.+.+++.=.|
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals 284 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA 284 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence 6888886421 1 000 01235899999999977654 2 24899999999999999999998
Q ss_pred CCccc-CHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCC
Q 042102 236 RGLLV-DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS 286 (317)
Q Consensus 236 rg~~v-d~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~ 286 (317)
....- ..+..+ ....|.|.+.+ -... .-+..|+++-|-++-
T Consensus 285 NP~~E~~p~~a~-~~~~~~i~atG---rs~~------pnQ~NN~~~FPgi~~ 326 (752)
T PRK07232 285 NPDPEITPEEAK-AVRPDAIIATG---RSDY------PNQVNNVLCFPYIFR 326 (752)
T ss_pred CCCccCCHHHHH-HhcCCEEEEEC---CcCC------CCcccceeecchhhH
Confidence 87752 222222 22223454433 1111 235668888886653
No 267
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.17 E-value=0.023 Score=53.15 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=42.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC---------------cc--ccCCHHHhcccCCEEEEec
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN---------------YK--YYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~---------------~~--~~~~l~el~~~aDvV~~~l 207 (317)
++|+|||.|.+|..+|..+...|. +|..+|..++...+ .. ...+. +.++.||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 589999999999999999987664 89989875532100 00 12345 4579999999985
No 268
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.16 E-value=0.0096 Score=49.21 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102 151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV 230 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav 230 (317)
+-|+|.|.+++++++.++.+|++|.++|+.++. +..++-+. +.+. ++.. +.+ .+.++..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~-~~~~-----~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP-DDIL-----EDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH-HHHH-----HHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh-HHHH-----hcc-CCCCCeE
Confidence 468999999999999999999999998876431 12334322 2221 1111 111 3556666
Q ss_pred EEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102 231 LINIGRGLLVDEHELVSALLQGRLGGAG 258 (317)
Q Consensus 231 lVN~~rg~~vd~~aL~~al~~g~i~ga~ 258 (317)
+| +.++.-.|.+.|.++|++ +....+
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 66 788888999888888877 444343
No 269
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.13 E-value=0.061 Score=50.05 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC--CCCCCCccccCCHHHhcccCCEEEEeccCChhhh---------c-
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT--EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ---------H- 215 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~---------~- 215 (317)
|++++|||.=.=-..+++.|...|++|..+.-. .....+.......++.++++|+|++=+|.+.... .
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 679999998888889999999999987655432 2223344455566677999999999999765421 1
Q ss_pred cccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCC
Q 042102 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFE 263 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~ 263 (317)
.++++.+++|+++++ +-+| ++..++-++.++..|. ..|.++
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 246889999997665 4444 3445666677778876 554443
No 270
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.13 E-value=0.02 Score=54.73 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=53.3
Q ss_pred CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCC--CCCC--------Cc-c-cc--CCHHHhcccCCEEEEeccCCh
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTE--KPNL--------NY-K-YY--PNLIDLASNCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~--~~~~--------~~-~-~~--~~l~el~~~aDvV~~~lp~~~ 211 (317)
++|+|+|. |.+|+.+++.|... +.++. .+++.. .+.. .. . .. .+.++++.++|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999977 56776 334322 1110 00 0 01 245566678999999999553
Q ss_pred hhhccccHHHHhc-cCCCcEEEEeCC
Q 042102 212 ETQHIVNRQVINA-LGPKGVLINIGR 236 (317)
Q Consensus 212 ~t~~li~~~~l~~-mk~gavlVN~~r 236 (317)
. ++.... .+.|..+|+.|.
T Consensus 81 s------~~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 81 S------AELAPELLAAGVKVIDLSA 100 (346)
T ss_pred H------HHHHHHHHhCCCEEEeCCh
Confidence 2 333332 256888998873
No 271
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.12 E-value=0.099 Score=49.74 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=64.1
Q ss_pred cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCC-CC-------------CC--ccccCCHHHhcccCCEEEEe
Q 042102 145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEK-PN-------------LN--YKYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~-~~-------------~~--~~~~~~l~el~~~aDvV~~~ 206 (317)
.+.|++|++||=+ ++.++.+..+..+|++|.+..+..- +. .+ +....++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3789999999986 6788889999999999988776421 11 11 22357899999999999873
Q ss_pred c----cCC-h---h-----hhccccHHHHhcc-CCCcEEEEeC
Q 042102 207 C----SLT-E---E-----TQHIVNRQVINAL-GPKGVLINIG 235 (317)
Q Consensus 207 l----p~~-~---~-----t~~li~~~~l~~m-k~gavlVN~~ 235 (317)
. ... + + ....++++.++.. |++++|.-+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 110 0 1 1223677888876 7888888774
No 272
>PRK12862 malic enzyme; Reviewed
Probab=96.10 E-value=0.068 Score=56.15 Aligned_cols=156 Identities=10% Similarity=0.104 Sum_probs=105.5
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102 94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC- 172 (317)
Q Consensus 94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~- 172 (317)
.|++.|..- .-+|=.+++.+++.+|-. ++.+...+|.|.|.|..|-.+|+.+...|.
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLKLV-------------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 699999843 334555677777776533 356888999999999999999999999998
Q ss_pred --EEEEeCCCC-----CC--CCC-------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 173 --IIGYNSRTE-----KP--NLN-------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 173 --~V~~~~~~~-----~~--~~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+++.+|+.. .. ... .....+|.|+++.+|+++-.-- .|+|+++.++.|.+.+++.=.|.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~piifalsN 293 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPLIFALAN 293 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCEEEeCCC
Confidence 688888542 11 000 0123579999999998776421 47999999999999999999988
Q ss_pred Cccc-CHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCC
Q 042102 237 GLLV-DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS 286 (317)
Q Consensus 237 g~~v-d~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~ 286 (317)
...- ..+..++ ...|.|.+.+- .. -.-+..|+++-|=++-
T Consensus 294 P~~E~~p~~a~~-~~~~~i~atGr---s~------~p~Q~NN~~~FPgi~~ 334 (763)
T PRK12862 294 PTPEILPEEARA-VRPDAIIATGR---SD------YPNQVNNVLCFPYIFR 334 (763)
T ss_pred CcccCCHHHHHH-hcCCEEEEECC---cC------CCCcccceeeccchhh
Confidence 7642 2222222 22234544331 11 1235668888887763
No 273
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.08 E-value=0.041 Score=51.24 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=33.2
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCC
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~ 181 (317)
.+.|+++.|+|.|..+++++..|...|+ +|.+++|+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4678999999999999999999988897 799999975
No 274
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.05 E-value=0.013 Score=53.22 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=31.9
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|.+++|+|||+|.+|..+++.|...|. ++.++|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999999999997 6777664
No 275
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.076 Score=50.06 Aligned_cols=90 Identities=9% Similarity=0.031 Sum_probs=66.5
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCC-----------------------CC-------------ccccC--CHHHhcccC
Q 042102 159 IGTAIAKRAEAFDCIIGYNSRTEKPN-----------------------LN-------------YKYYP--NLIDLASNC 200 (317)
Q Consensus 159 iG~~~a~~l~~~G~~V~~~~~~~~~~-----------------------~~-------------~~~~~--~l~el~~~a 200 (317)
||..+|..+...|++|..+|++++.. .+ ..... +..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68899999999999999999877310 00 00111 255788999
Q ss_pred CEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHH
Q 042102 201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALL 250 (317)
Q Consensus 201 DvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~ 250 (317)
|+|+-++|.+.+.+.-+-++..+.++++++|.. .-+......|.+.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence 999999999999888777777788999999844 444456667777663
No 276
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.03 E-value=0.015 Score=57.11 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=44.2
Q ss_pred CeEEEEecChhHHHHHH---HH---hhCCCEEEEeCCCCCCCC-----------------CccccCCHHHhcccCCEEEE
Q 042102 149 KSVGILGMGRIGTAIAK---RA---EAFDCIIGYNSRTEKPNL-----------------NYKYYPNLIDLASNCQILVV 205 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~el~~~aDvV~~ 205 (317)
.+|+|||.|.+|...+- .+ ...|.+|..+|+.+.... ......++.+.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998554 22 334568999998764210 11124678899999999999
Q ss_pred eccC
Q 042102 206 ACSL 209 (317)
Q Consensus 206 ~lp~ 209 (317)
+.|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9983
No 277
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.02 E-value=0.12 Score=49.16 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=65.5
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l 207 (317)
.+.|++|+++|= .++.++.+..+..+|++|.+..+..-.. .+ .....++++.++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 488999999997 6788888999999999998887643211 01 223578999999999998832
Q ss_pred -----cCC---hh------hhccccHHHHhccCCCcEEEEeC
Q 042102 208 -----SLT---EE------TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 208 -----p~~---~~------t~~li~~~~l~~mk~gavlVN~~ 235 (317)
... ++ ....++++.++.+|++++|.-+.
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 110 01 12456788888888888887774
No 278
>PRK12861 malic enzyme; Reviewed
Probab=96.02 E-value=0.073 Score=55.72 Aligned_cols=155 Identities=11% Similarity=0.083 Sum_probs=105.4
Q ss_pred CcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-
Q 042102 94 GIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC- 172 (317)
Q Consensus 94 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~- 172 (317)
.|+++|..- .-+|=.+++.+++.+|-. ++.+...+|.|.|.|..|..+++.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~~~-------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLKVV-------------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHHh-------------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 799999843 334555777788776633 356888899999999999999999999998
Q ss_pred --EEEEeCCCC-----CCC--CC-------ccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 173 --IIGYNSRTE-----KPN--LN-------YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 173 --~V~~~~~~~-----~~~--~~-------~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+++.+|+.. ... .. .....+|.|+++.+|+++-. . ..|+|.++.++.|.+.+++.=.|.
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PIIFaLsN 289 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLILALAN 289 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEEEECCC
Confidence 688888532 110 00 01235899999999977654 2 248999999999999999999988
Q ss_pred Cccc-CHHHHHHHHHhCC-ceEEEeeCCCCCCCCCcccCCCCceEEcccCCC
Q 042102 237 GLLV-DEHELVSALLQGR-LGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS 286 (317)
Q Consensus 237 g~~v-d~~aL~~al~~g~-i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~ 286 (317)
...- ..+..+ + ..|+ |.+.+ . ....-+..|+++-|=++-
T Consensus 290 PtpE~~pe~a~-~-~~g~aivaTG------r---s~~pnQ~NN~l~FPgi~~ 330 (764)
T PRK12861 290 PTPEIFPELAH-A-TRDDVVIATG------R---SDYPNQVNNVLCFPYIFR 330 (764)
T ss_pred CCccCCHHHHH-h-cCCCEEEEeC------C---cCCCCccceeeecchhhH
Confidence 6642 112222 2 2344 43221 1 112245679999997763
No 279
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.00 E-value=0.073 Score=52.66 Aligned_cols=110 Identities=24% Similarity=0.277 Sum_probs=77.4
Q ss_pred cccCCeEEEEec----ChhHHHHHHHHhhCCC--EEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhcccc
Q 042102 145 KFTGKSVGILGM----GRIGTAIAKRAEAFDC--IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVN 218 (317)
Q Consensus 145 ~l~g~~vgIiG~----G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~ 218 (317)
-++-++|+|||. |.+|..+.+.++..|+ +|+..++......+...+.+++++-...|++++++|... +..++.
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~-~~~~l~ 82 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKY-VPQVVE 82 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHH-HHHHHH
Confidence 367789999999 8899999999998887 688888776555666678899999888999999999443 333332
Q ss_pred HHHHhccCCCcE-EEEeCCCcc-----cCHHHHHHHHHhCCceEE
Q 042102 219 RQVINALGPKGV-LINIGRGLL-----VDEHELVSALLQGRLGGA 257 (317)
Q Consensus 219 ~~~l~~mk~gav-lVN~~rg~~-----vd~~aL~~al~~g~i~ga 257 (317)
+..+ .+-.++ ++.-+-++. ..++.+.+..+++.++-.
T Consensus 83 -e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 83 -ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred -HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 2222 333344 444333332 235788888888877733
No 280
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.99 E-value=0.037 Score=54.00 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=62.6
Q ss_pred ccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEeccCChhh
Q 042102 146 FTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 146 l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
+.|++|+|+|+ ..-...+++.|...|++|.+||+...... ......++++.++.+|.|+++.+..+ -
T Consensus 311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-~ 389 (411)
T TIGR03026 311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-F 389 (411)
T ss_pred ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-H
Confidence 68999999998 55778999999999999999998753321 11124688899999999999987554 2
Q ss_pred hccccHHHHhc-cCCCcEEEEe
Q 042102 214 QHIVNRQVINA-LGPKGVLINI 234 (317)
Q Consensus 214 ~~li~~~~l~~-mk~gavlVN~ 234 (317)
+. ++-+.+.. |+ ..++||+
T Consensus 390 ~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 390 KD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred hc-cCHHHHHHhcC-CCEEEeC
Confidence 22 34444443 54 5578874
No 281
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.97 E-value=0.1 Score=49.05 Aligned_cols=90 Identities=10% Similarity=0.145 Sum_probs=64.0
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec-
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC- 207 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l- 207 (317)
+.|.+|+++|= +++-++.+..+..||++|.+..+..-.. .+ .....++++.+++||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999997 6888999999999999998877543211 11 223578999999999998742
Q ss_pred -cCC-----hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102 208 -SLT-----EE-----TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 208 -p~~-----~~-----t~~li~~~~l~~mk~gavlVN~~ 235 (317)
... ++ ....++++.++.+|+++++.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 100 01 12346778888888888877764
No 282
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.96 E-value=0.018 Score=52.12 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46889999999999999999999999997 67776653
No 283
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.0091 Score=53.56 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=48.5
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------Ccc-------ccCCHHHh-cccCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYK-------YYPNLIDL-ASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~-------~~~~l~el-~~~aDvV~~~lp~~~~ 212 (317)
+++.|+|+|.+|..+|+.|...|..|...++.+.... ... ....|.++ +.++|.++.+...+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 5799999999999999999999999998887654311 110 11236666 8899999998876654
No 284
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.91 E-value=0.034 Score=53.07 Aligned_cols=62 Identities=23% Similarity=0.201 Sum_probs=42.2
Q ss_pred CeEEEEecChhHHHHHHHHhhC-CCEEEE-eCCCCCCC------------------------CCccccCCHHHhcccCCE
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF-DCIIGY-NSRTEKPN------------------------LNYKYYPNLIDLASNCQI 202 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~-G~~V~~-~~~~~~~~------------------------~~~~~~~~l~el~~~aDv 202 (317)
.+|||+|+|.||+.+++.+... ++++.+ .++.++.. .+.....++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 4799999999999999988753 577654 44332100 011122457788889999
Q ss_pred EEEeccCC
Q 042102 203 LVVACSLT 210 (317)
Q Consensus 203 V~~~lp~~ 210 (317)
|+.+.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998754
No 285
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.91 E-value=0.013 Score=54.34 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=69.1
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------------CCccccC----------CH
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------------LNYKYYP----------NL 193 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------------~~~~~~~----------~l 193 (317)
+-...+.++-++|+|.+|-..+...+..|+-|..++..+... -++.... -+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 345677889999999999999999999999998887543210 0111111 14
Q ss_pred HHhcccCCEEEEe--ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 194 IDLASNCQILVVA--CSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 194 ~el~~~aDvV~~~--lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
.+.+++.|+|+.. +|..+.-+ ++.++..++||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEeh
Confidence 4678999999875 67777644 88999999999999999984
No 286
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.89 E-value=0.041 Score=51.58 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=69.7
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------CCCcc-----------ccCCHHHhcccCCEEEEeccCCh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------NLNYK-----------YYPNLIDLASNCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------~~~~~-----------~~~~l~el~~~aDvV~~~lp~~~ 211 (317)
++|+|+|.|.||.-+|-+|...|.+|..+.|.... ..+.. ......+....+|+|++++...+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 58999999999999999999999999888875311 10110 00111123467899999987543
Q ss_pred hhhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102 212 ETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAG 258 (317)
Q Consensus 212 ~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~ 258 (317)
+...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++.
T Consensus 83 -~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 83 -AEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred -HHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence 33332 3455567788887777554 34556677777666666543
No 287
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.89 E-value=0.0074 Score=50.06 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=68.5
Q ss_pred EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----CCcc--------------ccCCHHHhcccCCEEEEeccCChh
Q 042102 151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYK--------------YYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~~~~--------------~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
|+|+|.|.||.-+|.+|+..|.+|..+.+..... .+.. ......+....+|+|++++...+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~~ 80 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQL 80 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGGH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccch
Confidence 6899999999999999999999999888765110 0100 011223467889999999875543
Q ss_pred hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEE
Q 042102 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAG 258 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~ 258 (317)
...+. ..-..+.+++.++-.--| +-.++.+.+.+...++.++.
T Consensus 81 -~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 81 -EQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp -HHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred -HHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 33333 244556677777777665 44566666666555665443
No 288
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.88 E-value=0.062 Score=50.38 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=63.5
Q ss_pred ccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCCCC-C---------CC--ccccCCHHHhcccCCEEEEeccCC
Q 042102 146 FTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTEKP-N---------LN--YKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 146 l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~~~-~---------~~--~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
+.|++|+++|-| ++.++.+..+..||++|.+..+..-. . .+ .....++++.++.+|+|...- ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 789999999995 99999999999999999887764321 1 01 123578999999999887631 11
Q ss_pred -------hh-----hhccccHHHHhccCCCcEEEEeC
Q 042102 211 -------EE-----TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 211 -------~~-----t~~li~~~~l~~mk~gavlVN~~ 235 (317)
++ ...-++++.++.+|++++|.-+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 01 02235677777788887777654
No 289
>PLN02527 aspartate carbamoyltransferase
Probab=95.85 E-value=0.065 Score=50.35 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=61.9
Q ss_pred ccCCeEEEEecC---hhHHHHHHHHhhC-CCEEEEeCCCCCCC------------CCccccCCHHHhcccCCEEEEeccC
Q 042102 146 FTGKSVGILGMG---RIGTAIAKRAEAF-DCIIGYNSRTEKPN------------LNYKYYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 146 l~g~~vgIiG~G---~iG~~~a~~l~~~-G~~V~~~~~~~~~~------------~~~~~~~~l~el~~~aDvV~~~lp~ 209 (317)
+.|.||+++|-+ ++.++.+..+..+ |++|.+..+..-.. .......++++.++.||+|....-.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence 789999999976 6889999988887 99998777643211 1122357899999999999884311
Q ss_pred Ch------h-h-----hccccHHHHhccCCCcEEEEeC
Q 042102 210 TE------E-T-----QHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 210 ~~------~-t-----~~li~~~~l~~mk~gavlVN~~ 235 (317)
.+ . - ...++++.++.+|++++|..+.
T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 00 0 1 2345667777777777777654
No 290
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.83 E-value=0.03 Score=52.72 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=64.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC-------------C-cc-c-cCCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL-------------N-YK-Y-YPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~-------------~-~~-~-~~~l~el~~~aDvV~~~lp~~ 210 (317)
.+|+|||.|.+|..+|-.+...|. ++..+|...+... . .. . ..+.++ ++.||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999998876665 6888887654211 0 01 1 234554 89999999964321
Q ss_pred h---hhhc-cc--c-------HHHHhccCCCcEEEEeCCCcccCHH--HHHHH--HHhCCceEE
Q 042102 211 E---ETQH-IV--N-------RQVINALGPKGVLINIGRGLLVDEH--ELVSA--LLQGRLGGA 257 (317)
Q Consensus 211 ~---~t~~-li--~-------~~~l~~mk~gavlVN~~rg~~vd~~--aL~~a--l~~g~i~ga 257 (317)
+ .++- ++ | .+.+....|.+++++++ ..+|.- .+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence 1 1221 11 1 12333457889999997 444432 22332 444565555
No 291
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.77 E-value=0.015 Score=45.69 Aligned_cols=75 Identities=8% Similarity=0.051 Sum_probs=52.6
Q ss_pred hHHHHHHHHhhCCCEEEEeCCCCCCC--------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcE
Q 042102 159 IGTAIAKRAEAFDCIIGYNSRTEKPN--------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV 230 (317)
Q Consensus 159 iG~~~a~~l~~~G~~V~~~~~~~~~~--------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gav 230 (317)
-+..+++.|+..|++|.+||+..... .+.....++++.++.+|+|+++.+... -..+--++....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCHHHHHHhcCCCCE
Confidence 46789999999999999999876432 123345689999999999999988543 333322445567888999
Q ss_pred EEEe
Q 042102 231 LINI 234 (317)
Q Consensus 231 lVN~ 234 (317)
+|++
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
No 292
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.76 E-value=0.1 Score=49.60 Aligned_cols=90 Identities=10% Similarity=0.135 Sum_probs=62.8
Q ss_pred ccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec
Q 042102 146 FTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 146 l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l 207 (317)
+.|+||++||-+ ++.++.+..+..||++|.+..+..-.. .+ .....+++++++++|+|..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999997 788999999999999998877543211 11 123478999999999998743
Q ss_pred cC---C----hh-----hhccccHHHHh-ccCCCcEEEEeC
Q 042102 208 SL---T----EE-----TQHIVNRQVIN-ALGPKGVLINIG 235 (317)
Q Consensus 208 p~---~----~~-----t~~li~~~~l~-~mk~gavlVN~~ 235 (317)
=. . ++ ....++++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 10 0 01 12235677777 467887777664
No 293
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.74 E-value=0.02 Score=56.85 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=60.0
Q ss_pred ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------C-ccc--cCCHHHhcccCCEEEEeccCC
Q 042102 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------N-YKY--YPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~-~~~--~~~l~el~~~aDvV~~~lp~~ 210 (317)
+|+.-+|+|++|.|||.|.++..=++.|..+|++|.++++...+.. + ... ..=..+.++.+++|+.++...
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 4556789999999999999999988999999999999987543221 0 000 001234567888777775543
Q ss_pred hhhhccccHHHHhccCCCcEEEEeC
Q 042102 211 EETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
+ +|+.....++...+++|++
T Consensus 84 ~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 A-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred H-----HhHHHHHHHHHcCcEEEEC
Confidence 3 3444444455555666653
No 294
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.74 E-value=0.025 Score=52.86 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=41.1
Q ss_pred EEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC-------------Cc----cccCCHHHhcccCCEEEEecc
Q 042102 151 VGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL-------------NY----KYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~el~~~aDvV~~~lp 208 (317)
|+|||.|.+|..+|..+...|. +|..+|.++.... .. ....+. +.++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999886665 9999998654210 00 012344 45899999999763
No 295
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.72 E-value=0.021 Score=55.31 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=59.6
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhC-CCEEEEeCCCCCCCCC----c--------cccCCHH-HhcccCCEEEEeccCC
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAF-DCIIGYNSRTEKPNLN----Y--------KYYPNLI-DLASNCQILVVACSLT 210 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~~~----~--------~~~~~l~-el~~~aDvV~~~lp~~ 210 (317)
-..++|+|+|. |.+|+.+.+.|..- +++|..+.+....... . ....+++ +.++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35569999998 89999999999877 6687665443221100 0 0011222 2258899999999953
Q ss_pred hhhhccccHHHHhccCCCcEEEEeCCCcccCHH
Q 042102 211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~rg~~vd~~ 243 (317)
...+....|+.|..+|+.|..-..+.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDI 142 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCc
Confidence 234455556678999999865444443
No 296
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.023 Score=56.00 Aligned_cols=121 Identities=18% Similarity=0.254 Sum_probs=74.9
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc--cCCHHHhcccCCEEEEe--ccCChh
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY--YPNLIDLASNCQILVVA--CSLTEE 212 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~aDvV~~~--lp~~~~ 212 (317)
+.+++|.|+|+|.-|.++++.|+..|++|.++|.++... .+... -....+.+..+|+|+.. +|.+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 459999999999999999999999999999999665541 11111 11122678889998886 332211
Q ss_pred --------hhccccHH-HHhcc-CCCcEEEEe-CCCcccCHHHHHHHHH--------hCCceEEEeeCCCCCC
Q 042102 213 --------TQHIVNRQ-VINAL-GPKGVLINI-GRGLLVDEHELVSALL--------QGRLGGAGLDVFEHEP 266 (317)
Q Consensus 213 --------t~~li~~~-~l~~m-k~gavlVN~-~rg~~vd~~aL~~al~--------~g~i~ga~lDV~~~EP 266 (317)
-..+++.= .|-.. ++..++-=+ +-|..--..-+...|+ .|+|...++|+.++++
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 11122222 22222 233454444 4577655555544444 4677888899988744
No 297
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.69 E-value=0.044 Score=48.66 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.6
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+++|+|||+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46889999999999999999999999998 57777754
No 298
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.66 E-value=0.027 Score=53.77 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=53.8
Q ss_pred CeEEEEec-ChhHHHHHHHHhhC-CCEEE-EeCCCCCCC-CC-----cc-----ccCCHHH-hcccCCEEEEeccCChhh
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAF-DCIIG-YNSRTEKPN-LN-----YK-----YYPNLID-LASNCQILVVACSLTEET 213 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~-G~~V~-~~~~~~~~~-~~-----~~-----~~~~l~e-l~~~aDvV~~~lp~~~~t 213 (317)
++|+|+|. |.+|+.+++.+... ++++. +.++..... .. .. ...++++ ...++|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 58999997 99999999999876 56764 455432211 00 00 1222222 45789999999996533
Q ss_pred hccccHHHHh-ccCCCcEEEEeCCCccc
Q 042102 214 QHIVNRQVIN-ALGPKGVLINIGRGLLV 240 (317)
Q Consensus 214 ~~li~~~~l~-~mk~gavlVN~~rg~~v 240 (317)
.+... ..+.|..+||.|-.=-.
T Consensus 82 -----~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 82 -----MDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred -----HHHHHHHHhCCCEEEECCcccCC
Confidence 22222 23578999999844333
No 299
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.63 E-value=0.18 Score=49.46 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=64.3
Q ss_pred cccCCeEEEEecC---hhHHHHHHHHhhC-CCEEEEeCCCCCC-CC---------C--ccccCCHHHhcccCCEEEEecc
Q 042102 145 KFTGKSVGILGMG---RIGTAIAKRAEAF-DCIIGYNSRTEKP-NL---------N--YKYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~-G~~V~~~~~~~~~-~~---------~--~~~~~~l~el~~~aDvV~~~lp 208 (317)
.+.|+||++||-+ ++.++.+..+..+ |++|.+..+..-. .. + +....++++.++.+|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 4789999999994 8899999988876 9999887764321 10 1 2235789999999999987442
Q ss_pred CCh-----h-----hhccccHHHHhc-cCCCcEEEEeC
Q 042102 209 LTE-----E-----TQHIVNRQVINA-LGPKGVLINIG 235 (317)
Q Consensus 209 ~~~-----~-----t~~li~~~~l~~-mk~gavlVN~~ 235 (317)
..+ . -...++++.++. .|++++|.-+.
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 111 0 113457788887 78888887664
No 300
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.62 E-value=0.11 Score=49.43 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=63.0
Q ss_pred ccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCCCC--------------CC--ccccCCHHHhcccCCEEEEec
Q 042102 146 FTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEKPN--------------LN--YKYYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 146 l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~el~~~aDvV~~~l 207 (317)
+.|++|++||=+ ++.++.+..+..+|++|.+..+..-.. .+ .....++++.++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 789999999975 888999999999999998877642111 11 224578999999999998742
Q ss_pred c----C----Chh-----hhccccHHHHhccC-CCcEEEEeC
Q 042102 208 S----L----TEE-----TQHIVNRQVINALG-PKGVLINIG 235 (317)
Q Consensus 208 p----~----~~~-----t~~li~~~~l~~mk-~gavlVN~~ 235 (317)
= . .++ -...++++.++.+| ++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 1 0 000 12345777788775 477777764
No 301
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.61 E-value=0.02 Score=53.86 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=45.2
Q ss_pred CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCCC-------cc--------ccCCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNLN-------YK--------YYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~el~~~aDvV~~~lp~~ 210 (317)
++|+|||.|.+|..+|..|...| .+|..+|+......+ .. ...+. +.++.||+|+++.+..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999998888 479999986542211 00 11233 5689999999998863
No 302
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.03 Score=55.09 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=66.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----------Ccc--ccCCHHHhcccCCEEEEeccCChh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----------NYK--YYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
.+.++++.|+|.|.+|.++|+.|...|++|.++|+...... +.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36789999999999999999999999999999998642210 111 112233556789998887543332
Q ss_pred hh--------cc--cc-HHHHhccCCCcEE-EEeCCCcccCHHHHHHHHHh
Q 042102 213 TQ--------HI--VN-RQVINALGPKGVL-INIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 213 t~--------~l--i~-~~~l~~mk~gavl-VN~~rg~~vd~~aL~~al~~ 251 (317)
.. ++ +. .+.+....+..++ |--+.|..--.+-|.+.|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22 11 11 1112222223333 44457887777777777765
No 303
>PRK08223 hypothetical protein; Validated
Probab=95.52 E-value=0.049 Score=50.61 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=31.8
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|++.+|.|||+|.+|..+++.|...|. ++..+|.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 46899999999999999999999999998 6766664
No 304
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.51 E-value=0.032 Score=54.80 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=47.9
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc-------ccCCHHHh-cccCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK-------YYPNLIDL-ASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~-------~~~~l~el-~~~aDvV~~~lp~~~~ 212 (317)
+++.|+|+|.+|+.+++.|...|.+|.++++++... .+.. ....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 479999999999999999999999999998765421 1111 11235555 7899999999886554
No 305
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.51 E-value=0.084 Score=48.56 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=58.0
Q ss_pred CeEEEEe-cChhHHHHHHHHhh-CCCEEE-EeCCCCCCC-------------CCccccCCHHHhcccCCEEEEeccCChh
Q 042102 149 KSVGILG-MGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN-------------LNYKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG-~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
.+|+|+| +|.||+.+++.+.. -++++. ++++..... .+.....+++++...+|+|+.+.|...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~- 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG- 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence 4899999 69999999999875 578764 566432111 122334678888667999998875322
Q ss_pred hhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCc
Q 042102 213 TQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRL 254 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i 254 (317)
.. +-....++.|.-+|-...|--. +.+.|.++.++..+
T Consensus 81 ~~----~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~ 119 (266)
T TIGR00036 81 VL----NHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI 119 (266)
T ss_pred HH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence 11 2223334555444433334322 23345555555333
No 306
>PLN02342 ornithine carbamoyltransferase
Probab=95.50 E-value=0.24 Score=47.41 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=64.0
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC----------C---CccccCCHHHhcccCCEEEEec---
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN----------L---NYKYYPNLIDLASNCQILVVAC--- 207 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~---~~~~~~~l~el~~~aDvV~~~l--- 207 (317)
.+.|+||+++|= .++-++.+..+..||++|.+..+..-.. . .+....++++.++.+|+|..-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 378999999987 3577888888899999998877643211 0 1234578999999999998753
Q ss_pred -cCChh--------hhccccHHHHhccCCCcEEEEeC
Q 042102 208 -SLTEE--------TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 208 -p~~~~--------t~~li~~~~l~~mk~gavlVN~~ 235 (317)
-..+. ....++++.++.+|++++|.-+.
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11111 12456788888888888877764
No 307
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.47 E-value=0.15 Score=48.52 Aligned_cols=91 Identities=9% Similarity=0.128 Sum_probs=61.8
Q ss_pred cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCC-CC-------------CC--ccccCCHHHhcccCCEEEEe
Q 042102 145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEK-PN-------------LN--YKYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~-~~-------------~~--~~~~~~l~el~~~aDvV~~~ 206 (317)
.+.|++|++||-+ ++.++++..+..||+++.+..+..- +. .+ .....++++.++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4789999999976 6899999999999999988776432 11 01 22357899999999999874
Q ss_pred ccCC----h---------hhhccccHHHHhcc-CCCcEEEEeC
Q 042102 207 CSLT----E---------ETQHIVNRQVINAL-GPKGVLINIG 235 (317)
Q Consensus 207 lp~~----~---------~t~~li~~~~l~~m-k~gavlVN~~ 235 (317)
.=.. . -....++++.++.. |++++|.-+.
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 2100 0 01223566666663 6777776664
No 308
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.44 E-value=0.052 Score=52.25 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=61.3
Q ss_pred ccCCeEEEEecC----------hhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEeccCC
Q 042102 146 FTGKSVGILGMG----------RIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 146 l~g~~vgIiG~G----------~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
|.||||||+|+- .-...++++|+..|++|.+||+..... .+.....+++++++.||+++++..+.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD 387 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence 789999999984 456788999999999999999865432 12345788999999999999987654
Q ss_pred hhhhccccHHHHhccCCCcEEEE
Q 042102 211 EETQHIVNRQVINALGPKGVLIN 233 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN 233 (317)
+ -+. ++-+.+ .|| +.++++
T Consensus 388 e-f~~-~d~~~~-~m~-~~~v~D 406 (414)
T COG1004 388 E-FRD-LDFEKL-LMK-TPVVID 406 (414)
T ss_pred H-Hhc-cChhhh-hcc-CCEEEe
Confidence 3 222 333333 565 566665
No 309
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.42 E-value=0.07 Score=50.89 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred CeEEEEecChhHHHHHHHHhhC----------CCEEE-EeCCCCC-----CC-----------CC-cc------ccCCHH
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF----------DCIIG-YNSRTEK-----PN-----------LN-YK------YYPNLI 194 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~-----~~-----------~~-~~------~~~~l~ 194 (317)
.+|||+|+|.||+.+++.+... +++|. +.|++.. .. .+ .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998644 56654 4454211 00 00 00 123778
Q ss_pred Hhc--ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102 195 DLA--SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG 255 (317)
Q Consensus 195 el~--~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~ 255 (317)
+++ .+.|+|+.++|....+...--.-....++.|.-+|-..-+.+. ..+.|.++.++....
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 887 4689999999965442211112224556667666554333332 456777777766554
No 310
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.34 E-value=0.021 Score=45.09 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=52.5
Q ss_pred EEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc----cC---CHHHh-cccCCEEEEeccCChhhhccc
Q 042102 151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY----YP---NLIDL-ASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~---~l~el-~~~aDvV~~~lp~~~~t~~li 217 (317)
+-|+|+|.+|+.+++.|+..+.+|.+.+..+... .+... .. .++++ +.++|.++++.+....+. .
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~--~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL--L 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH--H
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH--H
Confidence 5699999999999999999777898888765321 12111 12 23333 788999999988654433 3
Q ss_pred cHHHHhccCCCcEEEE
Q 042102 218 NRQVINALGPKGVLIN 233 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN 233 (317)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3445565556555543
No 311
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.037 Score=54.71 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=65.6
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEEe--ccCC-h----h
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVVA--CSLT-E----E 212 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~~--lp~~-~----~ 212 (317)
++.|++|.|+|+|..|.++|+.|+..|++|.++|...... .+......-.+-+..+|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4678999999999999999999999999999999653211 1111111011235678987753 2221 1 1
Q ss_pred hh---c----cccH-HHHhc-c-----CCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 213 TQ---H----IVNR-QVINA-L-----GPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 213 t~---~----li~~-~~l~~-m-----k~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
.. . ++++ +.+.. + +...+-|--+.|..--.+-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11 1 1332 22222 2 223344555689888877788888753
No 312
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.036 Score=55.44 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=64.9
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc--cCCHHHhcccCCEEEEeccCChhhh---
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY--YPNLIDLASNCQILVVACSLTEETQ--- 214 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~el~~~aDvV~~~lp~~~~t~--- 214 (317)
.+.|++|.|+|+|.+|.+.++.|+..|++|.++|...... .+... .....+.++.+|+|+.+-...+...
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~ 88 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLA 88 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHH
Confidence 3578999999999999999999999999999999653211 12211 1123455678998877643222111
Q ss_pred -------ccccHHHHh--ccC------CCcE-EEEeCCCcccCHHHHHHHHHh
Q 042102 215 -------HIVNRQVIN--ALG------PKGV-LINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 215 -------~li~~~~l~--~mk------~gav-lVN~~rg~~vd~~aL~~al~~ 251 (317)
.++++-.+. .++ +..+ =|--+-|..--..-+.+.|+.
T Consensus 89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332221 111 2223 344456887777777777765
No 313
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.28 E-value=0.043 Score=54.94 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=66.0
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------Cccc--cCCHHHhcccCCEEEEe--ccCC--
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKY--YPNLIDLASNCQILVVA--CSLT-- 210 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~--~~~l~el~~~aDvV~~~--lp~~-- 210 (317)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|....... +... .....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999996542210 1111 11123456689988886 4432
Q ss_pred ---hh-------hhccccH-HHHh-cc--------CCCcEEEEeCCCcccCHHHHHHHHHhCCce
Q 042102 211 ---EE-------TQHIVNR-QVIN-AL--------GPKGVLINIGRGLLVDEHELVSALLQGRLG 255 (317)
Q Consensus 211 ---~~-------t~~li~~-~~l~-~m--------k~gavlVN~~rg~~vd~~aL~~al~~g~i~ 255 (317)
+. ...++.+ +.+. .+ ++..+-|--+-|..--..-|.+.|++....
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 21 1122322 2221 12 112333444567777777777777654443
No 314
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.24 E-value=0.4 Score=46.04 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=45.8
Q ss_pred cccCCeEEEEecC--------hhHHHHHHHHhhCCCEEEEeCCCCCC-C-------------CC--ccccCCHHHhcccC
Q 042102 145 KFTGKSVGILGMG--------RIGTAIAKRAEAFDCIIGYNSRTEKP-N-------------LN--YKYYPNLIDLASNC 200 (317)
Q Consensus 145 ~l~g~~vgIiG~G--------~iG~~~a~~l~~~G~~V~~~~~~~~~-~-------------~~--~~~~~~l~el~~~a 200 (317)
.+.|+||+|+|.| ++.++++..+..||++|.+..+..-. . .+ .....++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 44578888899999999888765311 1 11 12357899999999
Q ss_pred CEEEEe
Q 042102 201 QILVVA 206 (317)
Q Consensus 201 DvV~~~ 206 (317)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999775
No 315
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.23 E-value=0.067 Score=49.98 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=26.2
Q ss_pred eEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
+|.|+|.|.+|..+|+.|...|. ++..+|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 58999999999999999999998 6766663
No 316
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.23 E-value=0.73 Score=41.28 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=36.4
Q ss_pred ccccccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
++..-.++|++|.|||.|.++..=++.|..+|++|.++++..
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 345567889999999999999998899999999999998764
No 317
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.22 E-value=0.091 Score=52.33 Aligned_cols=97 Identities=10% Similarity=0.189 Sum_probs=68.2
Q ss_pred cccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C--------------------------Cc
Q 042102 145 KFTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L--------------------------NY 187 (317)
Q Consensus 145 ~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~--------------------------~~ 187 (317)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+..... . ..
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999998 5678899999999999999999864321 0 01
Q ss_pred cccCCHHHhcccCCEEEEeccCChhhhccccHH-HHhccCCCcEEEEeCCCcccCHHHH
Q 042102 188 KYYPNLIDLASNCQILVVACSLTEETQHIVNRQ-VINALGPKGVLINIGRGLLVDEHEL 245 (317)
Q Consensus 188 ~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~-~l~~mk~gavlVN~~rg~~vd~~aL 245 (317)
....++.+.++.||+|+++....+ .+. ++-+ ..+.|++..+++|. |+ +.|.+.+
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 123456789999999999987654 233 3433 35567766688884 54 3465444
No 318
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.09 Score=48.81 Aligned_cols=105 Identities=24% Similarity=0.202 Sum_probs=68.9
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCC----------ccccCCHHHh--cccCCEEEEeccCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLN----------YKYYPNLIDL--ASNCQILVVACSLT 210 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~----------~~~~~~l~el--~~~aDvV~~~lp~~ 210 (317)
....|+++.|+|.|..+++++..|+..|+ +|.+++|+..+... ......+.++ ..++|+|+.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 34678999999999999999999999996 79999997654210 0011122222 22699999999964
Q ss_pred hhhh---ccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 211 EETQ---HIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 211 ~~t~---~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
-.-. .+++ .+.++++.++.++--.+. .+.-|..|=+.|
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 3322 1333 456788889888865554 443444444434
No 319
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.21 E-value=0.014 Score=48.49 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------------CccccCCHHHhcccCCEEEEeccC-
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------------NYKYYPNLIDLASNCQILVVACSL- 209 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~el~~~aDvV~~~lp~- 209 (317)
++|+|||. |.+|+.+|-.|...+. ++..+|....... ......+..+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 48999999 9999999999976554 7888888743211 011123567889999999998633
Q ss_pred -Ch-hhh-ccc--c-------HHHHhccCCCcEEEEeCCCcccC
Q 042102 210 -TE-ETQ-HIV--N-------RQVINALGPKGVLINIGRGLLVD 241 (317)
Q Consensus 210 -~~-~t~-~li--~-------~~~l~~mk~gavlVN~~rg~~vd 241 (317)
.+ +++ .++ | .+.+....|.++++.++ .++|
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd 122 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD 122 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence 22 111 111 1 12233445788888874 4455
No 320
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.19 E-value=0.038 Score=59.74 Aligned_cols=89 Identities=9% Similarity=0.138 Sum_probs=63.3
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCC-----------------------------C---CCCC--c---
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE-----------------------------K---PNLN--Y--- 187 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~-----------------------------~---~~~~--~--- 187 (317)
.+.-.++.|+|.|++|+..++.+.++|++. .++.. . ...+ +
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~~--v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHTF--VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCCc--cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 455689999999999999999999886541 11100 0 0000 0
Q ss_pred -------cccCC-HHHhcccCCEEEEeccCChhhhccccHH-HHhccCCCc----EEEEeC
Q 042102 188 -------KYYPN-LIDLASNCQILVVACSLTEETQHIVNRQ-VINALGPKG----VLINIG 235 (317)
Q Consensus 188 -------~~~~~-l~el~~~aDvV~~~lp~~~~t~~li~~~-~l~~mk~ga----vlVN~~ 235 (317)
.+... +++.+..+|+++.++-..+..-.++.++ ..+.||+|. +++|++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00111 3568899999999998888888899888 777899998 888875
No 321
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.18 E-value=0.048 Score=55.11 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=34.3
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
.+.++++.|+|.|.+|++++..|...|++|.+++|+.+
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 47789999999999999999999999999999988643
No 322
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.08 E-value=0.048 Score=55.70 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=48.6
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cc---cccCC---HHHhcccCCEEEEecc
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY---KYYPN---LIDLASNCQILVVACS 208 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~el~~~aDvV~~~lp 208 (317)
.....++|||||.|..|+.+++.++.+|++|..++..+.... +. ..+.+ +.++.+++|+|.....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 347889999999999999999999999999999987654221 00 01233 5566788999876543
No 323
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.07 E-value=0.049 Score=54.15 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=65.6
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------Ccc--ccCCHHHhcccCCEEEEec--cC-Chh
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------NYK--YYPNLIDLASNCQILVVAC--SL-TEE 212 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~--~~~~l~el~~~aDvV~~~l--p~-~~~ 212 (317)
+.|++|+|+|+|.-|.++++.|...|++|.++|....... +.. ......+.+.++|+|+..- |. ++.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999985432111 000 0111234567899887753 32 221
Q ss_pred h-------hccccHHHH--hc-cC-----CCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 213 T-------QHIVNRQVI--NA-LG-----PKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 213 t-------~~li~~~~l--~~-mk-----~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
. ..++++-.| .. ++ ...+-|--+.|..--..-+.+.|+..
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 1 124444433 32 32 12334544568877777777777643
No 324
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.04 E-value=0.097 Score=44.97 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=27.1
Q ss_pred eEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
+|+|+|+|.+|..+++.|...|. ++..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998 58777754
No 325
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.02 E-value=0.042 Score=52.39 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=42.5
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cc---cccCC---HHHhcccCCEEEE
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY---KYYPN---LIDLASNCQILVV 205 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~el~~~aDvV~~ 205 (317)
||||||.|..|+.+++.++.+|++|++++.++.... +. ....+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 599999999999999999999999999987654321 10 01233 6677888998754
No 326
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.99 E-value=0.24 Score=44.11 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=55.6
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc----c-cCCHHHh-----cccCCEEEEeccCC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK----Y-YPNLIDL-----ASNCQILVVACSLT 210 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~----~-~~~l~el-----~~~aDvV~~~lp~~ 210 (317)
..|.+|.|.|.|.+|+.+++.++..|.+|.+.+++..... +.. . ..+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 3578999999999999999999999999988877643210 000 0 0111111 23467777665532
Q ss_pred hhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102 211 EETQHIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
. .-...++.|+++..+++++...
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccCC
Confidence 1 1234566677777777776544
No 327
>PLN02602 lactate dehydrogenase
Probab=94.97 E-value=0.11 Score=49.81 Aligned_cols=86 Identities=16% Similarity=0.318 Sum_probs=55.6
Q ss_pred CeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC--------------cccc--CCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN--------------YKYY--PNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~--------------~~~~--~~l~el~~~aDvV~~~lp~~ 210 (317)
++|+|||.|.+|..+|-.+...|. ++..+|...+...+ .... .+. +.++.||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999987665 68888876543210 0111 233 4489999999984432
Q ss_pred h---hhh-ccc--c-------HHHHhccCCCcEEEEeC
Q 042102 211 E---ETQ-HIV--N-------RQVINALGPKGVLINIG 235 (317)
Q Consensus 211 ~---~t~-~li--~-------~~~l~~mk~gavlVN~~ 235 (317)
. .++ .++ | .+.+....|.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 122 112 1 12234456889999987
No 328
>PRK11579 putative oxidoreductase; Provisional
Probab=94.96 E-value=0.042 Score=52.25 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=44.8
Q ss_pred CeEEEEecChhHHH-HHHHHhh-CCCEEE-EeCCCCCCC----CCccccCCHHHhcc--cCCEEEEeccCCh
Q 042102 149 KSVGILGMGRIGTA-IAKRAEA-FDCIIG-YNSRTEKPN----LNYKYYPNLIDLAS--NCQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~G~iG~~-~a~~l~~-~G~~V~-~~~~~~~~~----~~~~~~~~l~el~~--~aDvV~~~lp~~~ 211 (317)
.+|||||+|.||+. .+..++. -++++. ++|++.... .....+.+++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 48999999999985 4665554 367765 577664321 12234678999996 5799999999754
No 329
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.90 E-value=0.026 Score=47.94 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=47.1
Q ss_pred EEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC---Ccc-------ccCCHHHhcccCCEEEEeccCChh
Q 042102 151 VGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL---NYK-------YYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 151 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---~~~-------~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
|.|+|. |.+|+.+++.|...|.+|.+..|++.+.. +.. ...++.+.++.+|.|+.+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678995 99999999999999999999888765421 111 123456788999999999875443
No 330
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.87 E-value=0.4 Score=45.09 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCC------C------CC----ccccCCHHHhcccCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP------N------LN----YKYYPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~------~------~~----~~~~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
++|.|+|.|.||.-.+.+|...|..|..+.|.+.. . .+ ........+.+..+|+|++++....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q- 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ- 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc-
Confidence 58999999999999999999999778777766530 0 11 0112233456678999999987543
Q ss_pred hhccccHHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCc--ccCCCCceEEcccCCCcc
Q 042102 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--ELIGLENVVLLPHVASAT 288 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~--~L~~~pnvi~tPH~a~~t 288 (317)
+...+ +......++.++++-+--| +=.++.+.......++- .++..+...-..+. .......+.+.+.-++.+
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 33332 4556667888777655333 33444566666555454 23333322111111 344456777777666554
No 331
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=94.87 E-value=0.11 Score=47.31 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=67.6
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCC----------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCc
Q 042102 160 GTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKG 229 (317)
Q Consensus 160 G~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 229 (317)
|..||-.+...|.+|...+++.+-. .+....++=.+..+.+++.++-.|....|-++. ++.++.++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6788888888999999998876532 233344556678999999999999998888865 78899999999
Q ss_pred EEEEeCCCcccCHHHHHHHH
Q 042102 230 VLINIGRGLLVDEHELVSAL 249 (317)
Q Consensus 230 vlVN~~rg~~vd~~aL~~al 249 (317)
++-|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999886654 455555
No 332
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=94.86 E-value=0.24 Score=40.87 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=64.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCC---------CCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEE
Q 042102 162 AIAKRAEAFDCIIGYNSRTEKPN---------LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232 (317)
Q Consensus 162 ~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlV 232 (317)
..+++|...|++|++=.-..... .++....+.++++++||+|+-.-|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 46778888899998754332211 23334456679999999988876643 56778899999999
Q ss_pred EeCCCcccCHHHHHHHHHhCCceEEEeeCCCC
Q 042102 233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEH 264 (317)
Q Consensus 233 N~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~ 264 (317)
-...-. ....+++.|.+.++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876654 588999999999999887776544
No 333
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.86 E-value=0.061 Score=45.00 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=54.3
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc---cccCCHHHhcccCCEEEEeccCChhhhcccc---H
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY---KYYPNLIDLASNCQILVVACSLTEETQHIVN---R 219 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~el~~~aDvV~~~lp~~~~t~~li~---~ 219 (317)
..|++|++||+= +.++++++..+.++.++|+++...... ......++++++||+|++.-. . ++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--T----lvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--T----LVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--H----CCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--e----eecCCHH
Confidence 578999999961 237888888889999999887432111 133457789999999988722 1 222 4
Q ss_pred HHHhccCCCcEEEEeCCC
Q 042102 220 QVINALGPKGVLINIGRG 237 (317)
Q Consensus 220 ~~l~~mk~gavlVN~~rg 237 (317)
+.++..+++..++=+|-.
T Consensus 80 ~iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 80 DILELARNAREVILYGPS 97 (147)
T ss_dssp HHHHHTTTSSEEEEESCC
T ss_pred HHHHhCccCCeEEEEecC
Confidence 566667767776666543
No 334
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.86 E-value=0.069 Score=50.91 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=33.2
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46889999999999999999999999998 78887764
No 335
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.82 E-value=0.024 Score=54.68 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=42.2
Q ss_pred EEEEecChhHHHHHHHHhhCC-C-EEEEeCCCCCCC---------CCcc-------ccCCHHHhcccCCEEEEeccCC
Q 042102 151 VGILGMGRIGTAIAKRAEAFD-C-IIGYNSRTEKPN---------LNYK-------YYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~~G-~-~V~~~~~~~~~~---------~~~~-------~~~~l~el~~~aDvV~~~lp~~ 210 (317)
|+|+|.|.+|+.+++.|...+ . +|.+.+|+.++. .... ...++.++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999998766 4 888888876541 0111 1123778999999999998744
No 336
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.76 E-value=0.56 Score=44.60 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=64.4
Q ss_pred cccCCeEEEEecC--hhHHHHHHHHhhCCCEEEEeCCCCC-CC-------------CC--ccccCCHHHhcccCCEEEEe
Q 042102 145 KFTGKSVGILGMG--RIGTAIAKRAEAFDCIIGYNSRTEK-PN-------------LN--YKYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 145 ~l~g~~vgIiG~G--~iG~~~a~~l~~~G~~V~~~~~~~~-~~-------------~~--~~~~~~l~el~~~aDvV~~~ 206 (317)
.+.|++|++||=+ ++.++.+..+..+|++|.+..+..- +. .+ .....++++.++.+|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999976 7899999999999999988776431 10 01 22347899999999999775
Q ss_pred c----cCC----hh-----hhccccHHHHhcc-CCCcEEEEeCC
Q 042102 207 C----SLT----EE-----TQHIVNRQVINAL-GPKGVLINIGR 236 (317)
Q Consensus 207 l----p~~----~~-----t~~li~~~~l~~m-k~gavlVN~~r 236 (317)
. ... ++ -...++++.++.. |++++|.-+.-
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP 276 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP 276 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence 3 100 01 1234577888875 78888887743
No 337
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.25 Score=46.14 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=47.5
Q ss_pred ccCCeEEEEe---cChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CC-c-cccCCHHHhcccCCEEEEe
Q 042102 146 FTGKSVGILG---MGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LN-Y-KYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 146 l~g~~vgIiG---~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~-~-~~~~~l~el~~~aDvV~~~ 206 (317)
+.|++|+|+| .|+.-++.++.|+.||.+|..+.+..-.. .+ . ......+|.++++|++.+.
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 8899999999 89999999999999999999988753222 11 1 2344566699999988553
No 338
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.73 E-value=0.21 Score=45.61 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhC----CC-------EEEE
Q 042102 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF----DC-------IIGY 176 (317)
Q Consensus 108 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~----G~-------~V~~ 176 (317)
+|=-+++-+++.+|-. ++.|...++.|+|.|..|-.+|+.+... |. +++.
T Consensus 4 TaaV~lAgll~Al~~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~l 64 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT-------------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWL 64 (255)
T ss_dssp HHHHHHHHHHHHHHHH-------------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEE
Confidence 4555677777776544 3458899999999999999999999877 87 4777
Q ss_pred eCCCC-----CCC-C-----------CccccCCHHHhcccC--CEEEEeccCChhhhccccHHHHhccCC---CcEEEEe
Q 042102 177 NSRTE-----KPN-L-----------NYKYYPNLIDLASNC--QILVVACSLTEETQHIVNRQVINALGP---KGVLINI 234 (317)
Q Consensus 177 ~~~~~-----~~~-~-----------~~~~~~~l~el~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---gavlVN~ 234 (317)
+|+.. ... . ......+|.|+++.+ |+++-+-- ..++|+++.++.|.+ .+++.=.
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 65 VDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp EETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred EeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEEC
Confidence 77642 110 0 011124899999999 98877632 467899999999987 8999999
Q ss_pred CCCcccCHHHHHHHHHh--CCceEEEeeCCCCCCCCC-------cccCCCCceEEcccCC
Q 042102 235 GRGLLVDEHELVSALLQ--GRLGGAGLDVFEHEPDVP-------EELIGLENVVLLPHVA 285 (317)
Q Consensus 235 ~rg~~vd~~aL~~al~~--g~i~ga~lDV~~~EP~~~-------~~L~~~pnvi~tPH~a 285 (317)
|....--|-.-.++.+- |+...| ...|.++ ...-+..|+++-|=++
T Consensus 141 SNPt~~aE~~peda~~~t~g~ai~A-----tGSpf~pv~~~Gr~~~p~Q~NN~~iFPGig 195 (255)
T PF03949_consen 141 SNPTPKAECTPEDAYEWTDGRAIFA-----TGSPFPPVEYNGRSDYPNQCNNSYIFPGIG 195 (255)
T ss_dssp SSSCGGSSS-HHHHHHTTTSEEEEE-----ESS----EEETSCEESSCE-SGGGTHHHHH
T ss_pred CCCCCcccCCHHHHHhhCCceEEEe-----cCCccCCeeeCCeEEecCCCCeeEeeccce
Confidence 98776333333344443 333222 2223222 1244567888888655
No 339
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.72 E-value=0.066 Score=51.36 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=32.4
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 67777653
No 340
>PRK05086 malate dehydrogenase; Provisional
Probab=94.70 E-value=0.15 Score=48.06 Aligned_cols=89 Identities=12% Similarity=0.211 Sum_probs=54.9
Q ss_pred CeEEEEec-ChhHHHHHHHHh---hCCCEEEEeCCCCCCC---CCc---c--c------cCCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGM-GRIGTAIAKRAE---AFDCIIGYNSRTEKPN---LNY---K--Y------YPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~---~~G~~V~~~~~~~~~~---~~~---~--~------~~~l~el~~~aDvV~~~lp~~ 210 (317)
++|+|||. |.+|+.++..+. ..+..+..+++.+... .+. . . ..++.+.++.+|+|+++.-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998773 3445778888654321 000 1 0 235567889999999986542
Q ss_pred hh---hhc-cc------cHHHHh---ccCCCcEEEEeCCC
Q 042102 211 EE---TQH-IV------NRQVIN---ALGPKGVLINIGRG 237 (317)
Q Consensus 211 ~~---t~~-li------~~~~l~---~mk~gavlVN~~rg 237 (317)
.. ++- ++ -++..+ .-.+.+++++++-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 11 111 11 122333 33578899998653
No 341
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.64 E-value=0.038 Score=56.18 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=56.0
Q ss_pred CeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHHh-cccCCEEEEeccCChhhhc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LIDL-ASNCQILVVACSLTEETQH 215 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t~~ 215 (317)
.++-|+|+|++|+.+++.|+..|.+|.+.|.+++.. .+.. ...+ ++++ ++++|.++++.+.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 479999999999999999999999999998765432 1111 1112 3332 6789999999988777655
Q ss_pred cccHHHHhccCCCcEEEE
Q 042102 216 IVNRQVINALGPKGVLIN 233 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN 233 (317)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 4432 233345555553
No 342
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.60 E-value=0.087 Score=51.71 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=58.2
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCcc--c--cCC---HH-HhcccCCEEEEeccCC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNYK--Y--YPN---LI-DLASNCQILVVACSLT 210 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~--~--~~~---l~-el~~~aDvV~~~lp~~ 210 (317)
+..+++.|+|+|.+|+.+++.|...|.+|++++.+++.. .+.. . ..+ ++ .-+.++|.|+++.+.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 346899999999999999999999999999998765421 1111 0 112 32 2367899999888866
Q ss_pred hhhhccccHHHHhccCCCcEEEEeC
Q 042102 211 EETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
..+ ++-....+.+.+..+++-+.
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~~ 331 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALVN 331 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEEC
Confidence 433 33333445555555655443
No 343
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.58 E-value=1.3 Score=44.91 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=116.8
Q ss_pred hCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhh--
Q 042102 92 EKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEA-- 169 (317)
Q Consensus 92 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~-- 169 (317)
+..|++.|..- .-+|--+++.+|+.+|-. +..|...+|.|+|.|..|-.+|+.+..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~-------------------g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT-------------------GGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHHh-------------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 46899999754 345666788888887633 346888999999999999999999876
Q ss_pred ---CCC-------EEEEeCCCCC-----CC-C---------CccccCCHHHhccc--CCEEEEeccCChhhhccccHHHH
Q 042102 170 ---FDC-------IIGYNSRTEK-----PN-L---------NYKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 170 ---~G~-------~V~~~~~~~~-----~~-~---------~~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.|. +++.+|+..- .. . ......+|.|+++. .|+++-+-. .-|.|.++.+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi 420 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTFTKEVL 420 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCCCHHHH
Confidence 466 6777776421 00 0 01123589999999 898876532 2378999999
Q ss_pred hccC---CCcEEEEeCCCccc---CHHHHHHHHHhCCceEEEeeCCCCCCCCC-------cccCCCCceEEcccCCCccH
Q 042102 223 NALG---PKGVLINIGRGLLV---DEHELVSALLQGRLGGAGLDVFEHEPDVP-------EELIGLENVVLLPHVASATV 289 (317)
Q Consensus 223 ~~mk---~gavlVN~~rg~~v---d~~aL~~al~~g~i~ga~lDV~~~EP~~~-------~~L~~~pnvi~tPH~a~~t~ 289 (317)
+.|. +.+++.=.|...-- ..++.+++ .+|+...| ..-|.++ ...-+..|+++-|=++-..-
T Consensus 421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~A-----tGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal 494 (581)
T PLN03129 421 EAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFA-----SGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGAL 494 (581)
T ss_pred HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEE-----eCCCCCCeeeCCeeecCccccceeeccchhhHHH
Confidence 9995 88999888876532 22333332 23554323 1222222 12446679999998774322
Q ss_pred HH-----HHHHHHHHHHHHHHHH
Q 042102 290 ET-----RKAMADLVVGNLQAHF 307 (317)
Q Consensus 290 ~~-----~~~~~~~~~~nl~~~~ 307 (317)
.+ -+.|.-.+++.|-.+.
T Consensus 495 ~~~a~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 495 LSGAIRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred hcCCcCCCHHHHHHHHHHHHHhC
Confidence 11 2445555555555544
No 344
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.53 E-value=0.032 Score=51.82 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=33.0
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK 182 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~ 182 (317)
+.|+++.|+|.|..|++++-.|...|+ +|.+++|+..
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ 162 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS 162 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 557899999999999999999999998 6889998754
No 345
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.50 E-value=0.11 Score=48.34 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=54.1
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCCCCcc--ccCCHHH-hcccCCEEEEeccCChhhhccccHHHH
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNLNYK--YYPNLID-LASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~e-l~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
.|+++.|+|.|.+|...++.++.+|++ |.+.++......... ...+..+ .-...|+|+-+..... + + ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~-~---~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPS-L---I-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHH-H---H-HHHH
Confidence 477899999999999999999999997 556665433221110 0111111 1234688777755321 1 1 3567
Q ss_pred hccCCCcEEEEeCC
Q 042102 223 NALGPKGVLINIGR 236 (317)
Q Consensus 223 ~~mk~gavlVN~~r 236 (317)
+.++++..++.+|-
T Consensus 219 ~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 219 RRLAKGGEIVLAGF 232 (308)
T ss_pred HhhhcCcEEEEEee
Confidence 78889998888763
No 346
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.48 E-value=0.35 Score=39.76 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.8
Q ss_pred eEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 68888764
No 347
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.47 E-value=0.042 Score=56.42 Aligned_cols=87 Identities=25% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHHh-cccCCEEEEeccCChhhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LIDL-ASNCQILVVACSLTEETQ 214 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t~ 214 (317)
..++-|+|+|++|+.+++.|...|.++++.|.+++.. .+.. ...+ ++++ +.+||.++++.+..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4579999999999999999999999999998776431 1111 1122 3333 789999999999877665
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
.++ ...+.+.|...+|--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 443 23444556656555444
No 348
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.44 E-value=0.2 Score=47.13 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred ccCCeEEEEec---ChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccccCCHHHhcccCCEEEE
Q 042102 146 FTGKSVGILGM---GRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKYYPNLIDLASNCQILVV 205 (317)
Q Consensus 146 l~g~~vgIiG~---G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~~~~l~el~~~aDvV~~ 205 (317)
+.|.+|+++|= +++.++.+..+..+|+ +|.+..+..-.. .......+++++++.+|+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 77999999998 5999999999999999 898877643211 112335789999999999976
No 349
>PRK13529 malate dehydrogenase; Provisional
Probab=94.39 E-value=2.6 Score=42.77 Aligned_cols=209 Identities=13% Similarity=0.165 Sum_probs=129.4
Q ss_pred cCCCceEEEECCCCCCc-CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccc
Q 042102 68 SLPKLEIVATCSVGLDK-IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKF 146 (317)
Q Consensus 68 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l 146 (317)
.+|+. +|+.=--+..+ +.+..-.+..|++.|..- .-+|--+++.+|+.+|-. +..|
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r~~-------------------g~~l 293 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI---QGTGAVTLAGLLAALKIT-------------------GEPL 293 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc---chHHHHHHHHHHHHHHHh-------------------CCCh
Confidence 34564 55555444433 344344456899999764 345566788888887633 3458
Q ss_pred cCCeEEEEecChhHHHHHHHHhh----CCC-------EEEEeCCCCC---CCCC-------c----c---------ccCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA----FDC-------IIGYNSRTEK---PNLN-------Y----K---------YYPN 192 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~~~~~~---~~~~-------~----~---------~~~~ 192 (317)
...++.|+|.|..|-.+|+.+.. .|. +++.+|+..- .... + . ...+
T Consensus 294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~ 373 (563)
T PRK13529 294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS 373 (563)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC
Confidence 88999999999999999999875 577 6888776421 0000 0 0 1147
Q ss_pred HHHhcccC--CEEEEeccCChhhhccccHHHHhccCC---CcEEEEeCCCcccCHHHHHHHHH--hCCceEEEeeCCCCC
Q 042102 193 LIDLASNC--QILVVACSLTEETQHIVNRQVINALGP---KGVLINIGRGLLVDEHELVSALL--QGRLGGAGLDVFEHE 265 (317)
Q Consensus 193 l~el~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---gavlVN~~rg~~vd~~aL~~al~--~g~i~ga~lDV~~~E 265 (317)
|.|+++.+ |+++-+-- .-|.|+++.++.|.+ .+++.=.|+...-.|-.-.++.+ +|+...| ..-
T Consensus 374 L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~A-----tGs 444 (563)
T PRK13529 374 LLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVA-----TGS 444 (563)
T ss_pred HHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEE-----ECC
Confidence 89999988 98776521 247899999999987 89999998876633333333333 4544323 122
Q ss_pred CCCC-------cccCCCCceEEcccCCCccHH-----HHHHHHHHHHHHHHHHHC
Q 042102 266 PDVP-------EELIGLENVVLLPHVASATVE-----TRKAMADLVVGNLQAHFG 308 (317)
Q Consensus 266 P~~~-------~~L~~~pnvi~tPH~a~~t~~-----~~~~~~~~~~~nl~~~~~ 308 (317)
|.++ ...-+..|+++-|=++-..-. .-+.|.-.+++.|-++..
T Consensus 445 pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 445 PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 2222 123467799999987742221 124454555555554443
No 350
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.38 E-value=0.092 Score=51.98 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=67.7
Q ss_pred cccCCeEEEEecChhHHH-HHHHHhhCCCEEEEeCCCCCCC------CCcccc-CCHHHhcccCCEEEEec--cC-Chhh
Q 042102 145 KFTGKSVGILGMGRIGTA-IAKRAEAFDCIIGYNSRTEKPN------LNYKYY-PNLIDLASNCQILVVAC--SL-TEET 213 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~-~a~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~el~~~aDvV~~~l--p~-~~~t 213 (317)
..+++++.|+|+|..|.+ +|+.|+..|++|.++|...... .+.... ..-.+.+..+|+|+..- |. ++..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~ 83 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPEL 83 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHH
Confidence 356789999999999999 7999999999999999754321 111111 11234456899887753 32 2222
Q ss_pred h-------ccccHHHH-hc-cCCC-cEEEEeCCCcccCHHHHHHHHHhCC
Q 042102 214 Q-------HIVNRQVI-NA-LGPK-GVLINIGRGLLVDEHELVSALLQGR 253 (317)
Q Consensus 214 ~-------~li~~~~l-~~-mk~g-avlVN~~rg~~vd~~aL~~al~~g~ 253 (317)
. .++++-.+ .. +++. .+-|--+.|..--..-+.+.|+...
T Consensus 84 ~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 84 VAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 23444333 33 3333 3344445788877777777776554
No 351
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.075 Score=52.68 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=63.4
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCCCc------c-ccCCHHHhcccCCEEEEec--cC-Chhh--
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNY------K-YYPNLIDLASNCQILVVAC--SL-TEET-- 213 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~------~-~~~~l~el~~~aDvV~~~l--p~-~~~t-- 213 (317)
-.|++|+|+|+|.-|.++++.|+. |++|.++|......... . ......+.+.++|+|+..- |. ++..
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 357899999999999999999995 99999998543221100 0 0111234567899887753 22 2221
Q ss_pred -----hccccHHHH--hccCCCcEE-EEeCCCcccCHHHHHHHHHhC
Q 042102 214 -----QHIVNRQVI--NALGPKGVL-INIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 214 -----~~li~~~~l--~~mk~gavl-VN~~rg~~vd~~aL~~al~~g 252 (317)
..++++-.| ..+++..++ |--+.|..--..-+.+.|+..
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 123433333 333332333 444568877777777777753
No 352
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.38 E-value=0.14 Score=48.14 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=50.9
Q ss_pred CeEEEEe-cChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhcc-
Q 042102 149 KSVGILG-MGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL- 225 (317)
Q Consensus 149 ~~vgIiG-~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~m- 225 (317)
.+|+|+| .|..|+++.+.|..-.. ++.....+..... .+.++.++++|++++++|...+ .+....+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s------~~~~~~~~ 71 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAA------REAVALID 71 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHH------HHHHHHHH
Confidence 4899999 79999999999986653 5554433322211 2345567889999999995433 2222222
Q ss_pred CCCcEEEEeC
Q 042102 226 GPKGVLINIG 235 (317)
Q Consensus 226 k~gavlVN~~ 235 (317)
+.|..+||.|
T Consensus 72 ~~g~~VIDlS 81 (313)
T PRK11863 72 NPATRVIDAS 81 (313)
T ss_pred hCCCEEEECC
Confidence 4688889887
No 353
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.36 E-value=0.2 Score=47.53 Aligned_cols=106 Identities=11% Similarity=0.170 Sum_probs=63.9
Q ss_pred CeEEEEecChhHHHHHHHHhh--------CCCEEE-EeCCCCC--CCCC--------------cc-c-cC--CHHHhc-c
Q 042102 149 KSVGILGMGRIGTAIAKRAEA--------FDCIIG-YNSRTEK--PNLN--------------YK-Y-YP--NLIDLA-S 198 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~--------~G~~V~-~~~~~~~--~~~~--------------~~-~-~~--~l~el~-~ 198 (317)
++|+|+|+|++|+.+++.+.. ++.+|. +.|++.. ...+ .. . .. ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 379999999999999999865 566765 4444321 0000 00 0 11 455553 4
Q ss_pred cCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102 199 NCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG 255 (317)
Q Consensus 199 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~ 255 (317)
++|+|+=+.|...+-..- -.-..+.|+.|.-+|-..-|.+. ..+.|.+..+++...
T Consensus 81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 689999888753210101 12234556788888877777765 556777777766554
No 354
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.34 E-value=0.35 Score=45.73 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=58.8
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC---------------ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN---------------YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~el~~~aDvV 203 (317)
++|+|||. |.+|..+|..+...|. ++..+|..... ..+ .....+..+.++.||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999998876554 68888874322 100 01123456889999999
Q ss_pred EEeccCCh---hhhc-cc--cH-------HHHhccC-CCcEEEEeCCCcccCHHHHH
Q 042102 204 VVACSLTE---ETQH-IV--NR-------QVINALG-PKGVLINIGRGLLVDEHELV 246 (317)
Q Consensus 204 ~~~lp~~~---~t~~-li--~~-------~~l~~mk-~gavlVN~~rg~~vd~~aL~ 246 (317)
+++.-... +|+- ++ |. ..+.... |.+++|.++ ..+|.-..+
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 98754321 1211 11 11 1222334 588999886 556555433
No 355
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.32 E-value=0.072 Score=51.39 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=32.8
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+.+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999999998 77777653
No 356
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.31 E-value=0.22 Score=48.93 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=61.3
Q ss_pred CeEEEEecChhHHHHHHHHhhC----------CCEEE-EeCCCCCCCC-----CccccCCHHHhcc--cCCEEEEeccCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF----------DCIIG-YNSRTEKPNL-----NYKYYPNLIDLAS--NCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~----------G~~V~-~~~~~~~~~~-----~~~~~~~l~el~~--~aDvV~~~lp~~ 210 (317)
.+|||+|+|.+|+.+++.+... +.+|. +++++..... ......++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4899999999999998887432 45543 5566543321 1234567889885 479999887653
Q ss_pred hhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102 211 EETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG 255 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~ 255 (317)
.... .-..+.|+.|.-+|...-+... .-+.|.++.++....
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 2211 1122445666555533222222 335777777776654
No 357
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.26 E-value=0.11 Score=48.09 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=42.4
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCCCcc--ccCCHH-Hh-cccCCEEEEeccC
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYK--YYPNLI-DL-ASNCQILVVACSL 209 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~--~~~~l~-el-~~~aDvV~~~lp~ 209 (317)
++++.|+|.|..+++++..|+..|+ +|.+++|+.++..... ...+.. ++ ...+|+|+.+.|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCcc
Confidence 4689999999999999999999998 5999999865331110 001111 11 2447788887774
No 358
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.11 Score=51.28 Aligned_cols=108 Identities=12% Similarity=0.153 Sum_probs=66.0
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---------CCccc--cCCHHHhcccCCEEEEeccCC---h
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------LNYKY--YPNLIDLASNCQILVVACSLT---E 211 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~~~~~--~~~l~el~~~aDvV~~~lp~~---~ 211 (317)
+.++++.|+|.|.+|.++|+.|...|++|.++|...... .+... ....++.+..+|+|+..--.. +
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568899999999999999999999999999998654321 01111 111233456799888763332 2
Q ss_pred hhh-------ccccH-HHHhc-cC---CCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102 212 ETQ-------HIVNR-QVINA-LG---PKGVLINIGRGLLVDEHELVSALLQGR 253 (317)
Q Consensus 212 ~t~-------~li~~-~~l~~-mk---~gavlVN~~rg~~vd~~aL~~al~~g~ 253 (317)
... .++.+ +.+.. ++ ...+-|--+.|..--..-+.+.|+...
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 221 12222 23323 32 123344445688777777777776533
No 359
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.25 E-value=0.12 Score=50.34 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=31.8
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|.+.+|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 46889999999999999999999999898 6777764
No 360
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.23 E-value=0.17 Score=47.75 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=57.8
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-----cCCHHHhcc---cCCEEEEeccCChh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-----YPNLIDLAS---NCQILVVACSLTEE 212 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~el~~---~aDvV~~~lp~~~~ 212 (317)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++++.. .++.. ..++.++.. ..|+++-+.... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58899999999999999999999999 588877664332 12111 112333332 268887775532 2
Q ss_pred hhccccHHHHhccCCCcEEEEeCC
Q 042102 213 TQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+ -...++.+++|..+|.+|.
T Consensus 248 ~----~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S----INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H----HHHHHHHhhcCCEEEEEcc
Confidence 1 1456778899999999875
No 361
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.12 E-value=0.15 Score=49.91 Aligned_cols=69 Identities=9% Similarity=0.048 Sum_probs=53.3
Q ss_pred cccccCCeEEEEec----------ChhHHHHHHHHhhCC-CEEEEeCCCCCCCC----CccccCCHHHhcccCCEEEEec
Q 042102 143 TTKFTGKSVGILGM----------GRIGTAIAKRAEAFD-CIIGYNSRTEKPNL----NYKYYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 143 ~~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~el~~~aDvV~~~l 207 (317)
+.++.|++|+|+|+ ..-...+++.|+..| ++|.+||+...... ......++++.++.||+|+++.
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 34578999999998 557789999999996 99999998743211 1112468899999999999998
Q ss_pred cCCh
Q 042102 208 SLTE 211 (317)
Q Consensus 208 p~~~ 211 (317)
+..+
T Consensus 395 ~~~~ 398 (415)
T PRK11064 395 DHSQ 398 (415)
T ss_pred CCHH
Confidence 8653
No 362
>PRK07411 hypothetical protein; Validated
Probab=94.08 E-value=0.12 Score=50.25 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=31.9
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|...+|+|||+|.+|..+++.|...|. ++..+|.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 46899999999999999999999999998 6777764
No 363
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.07 E-value=0.052 Score=44.34 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
.++|.|+|+|.+|..+++.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998 67777753
No 364
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.07 E-value=0.18 Score=44.82 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=32.2
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.|+++.|.|. |.||+.+++.|...|++|.+..|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 8999999999999999998877653
No 365
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.04 E-value=0.09 Score=56.92 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=44.5
Q ss_pred cCCeEEEEecChhHHHHHHHHhhC-CCE-------------EEEeCCCCCCC-------CCc---cc-cCCHH---Hhcc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAF-DCI-------------IGYNSRTEKPN-------LNY---KY-YPNLI---DLAS 198 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~-G~~-------------V~~~~~~~~~~-------~~~---~~-~~~l~---el~~ 198 (317)
..++|+|||.|.||+..++.|... +.+ |.+.|++.+.. .+. .. ..+.+ ++++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999754 233 77788765321 011 11 23444 4457
Q ss_pred cCCEEEEeccCC
Q 042102 199 NCQILVVACSLT 210 (317)
Q Consensus 199 ~aDvV~~~lp~~ 210 (317)
++|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999974
No 366
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.00 E-value=0.24 Score=47.29 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=55.1
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCccc---cC---CHHHhcccCCEEEEeccCChhhh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKY---YP---NLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~---~~---~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
.|.+|.|.|.|.+|..+++.++.+|.+|++.+.+.... .+... .. .+.++....|+++-+..... +
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~-~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH-A- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH-H-
Confidence 57899999999999999999999999987665443221 12111 11 12233335687776654211 1
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
+ ...++.++++..+|.++.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 1 345677888888888764
No 367
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.00 E-value=0.13 Score=48.79 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=56.3
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC---CCCC-----CCcccc----CCHHH--hcccCCEEEEeccCChh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT---EKPN-----LNYKYY----PNLID--LASNCQILVVACSLTEE 212 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~---~~~~-----~~~~~~----~~l~e--l~~~aDvV~~~lp~~~~ 212 (317)
.|.+|.|+|.|.+|..+++.++..|++|++.+++ +++. .++... .+..+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 5789999999999999999999999999988763 2111 111111 11111 2235788887765221
Q ss_pred hhccccHHHHhccCCCcEEEEeCC
Q 042102 213 TQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~r 236 (317)
.+ ...++.++++..++.+|.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 12 456777888888888764
No 368
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=93.95 E-value=0.25 Score=46.66 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=63.4
Q ss_pred ccCCeEEEEecChhHHHHHHHHhh-------CCCEEEEe--CCCCCC--C----------------C------CccccCC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEA-------FDCIIGYN--SRTEKP--N----------------L------NYKYYPN 192 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~-------~G~~V~~~--~~~~~~--~----------------~------~~~~~~~ 192 (317)
-.-++|+|||.|+=|+.+|+.+.. |..+|..| +..... . + ......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 345799999999999999998852 33345433 211111 0 0 1123468
Q ss_pred HHHhcccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCc
Q 042102 193 LIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 193 l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
+.+++.+||+++..+|-+-- .. |.++.....|+++..|.+.-|=
T Consensus 99 l~ea~~dADilvf~vPhQf~-~~-ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFI-PR-ICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChhhH-HH-HHHHHhcccCCCCeEEEeecce
Confidence 99999999999999996543 22 4567788899999999987763
No 369
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.93 E-value=0.11 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=31.1
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN 184 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~ 184 (317)
++.|||.|.+|-.+|..++.+|.+|..+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999888776544
No 370
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.91 E-value=0.095 Score=51.50 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC---------Ccccc--CCHHHhccc-CCEEEEec--cC-C
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL---------NYKYY--PNLIDLASN-CQILVVAC--SL-T 210 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~el~~~-aDvV~~~l--p~-~ 210 (317)
+.|+++.|+|.|.+|.++|+.|+..|++|.++|+...... +.... ....+++.. +|+|+..- |. .
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999986542210 11111 122334444 89887754 22 2
Q ss_pred hh-------hhccccHHHH-hccCC-CcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 211 EE-------TQHIVNRQVI-NALGP-KGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 211 ~~-------t~~li~~~~l-~~mk~-gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
+. ...++.+-.| ..+.+ ..+-|--+.|..--..-+.+.|+..
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 21 1122333333 23333 3344555678877777777777653
No 371
>PRK04148 hypothetical protein; Provisional
Probab=93.87 E-value=0.11 Score=42.78 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=43.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-------Ccc---ccCCHHHhcccCCEEEEecc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-------NYK---YYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~---~~~~l~el~~~aDvV~~~lp 208 (317)
+++++..||+| -|..+|..|+..|.+|++.|.++.... .+. ....-.++-+.+|+|-..-|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56789999999 899999999999999999998765321 110 11223355666776665555
No 372
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.84 E-value=0.22 Score=46.64 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCeEEEEecChhHHHHHHHHhh-CCCEEE-EeCCCCCCC-------CCccc-cCCHHHhcc-----cCCEEEEeccCChh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN-------LNYKY-YPNLIDLAS-----NCQILVVACSLTEE 212 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~el~~-----~aDvV~~~lp~~~~ 212 (317)
..++||||.|.||+..+..+.. -++++. +++++++.. .+... +.+.+++++ +.|+|+.+.|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4689999999999996666654 356664 566554321 22222 467888874 58889999885432
Q ss_pred hhccccHHHHhccCCCcEEEEeC
Q 042102 213 TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 213 t~~li~~~~l~~mk~gavlVN~~ 235 (317)
-+ -.....+.|..+|+-+
T Consensus 84 ~e-----~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 VR-----HAAKLREAGIRAIDLT 101 (302)
T ss_pred HH-----HHHHHHHcCCeEEECC
Confidence 21 1223346677777765
No 373
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.80 E-value=0.063 Score=46.52 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred eEEEEecChhHHHHHHH--HhhCCCEE-EEeCCCCCCC----CC--ccccCCHHHhcc--cCCEEEEeccCCh
Q 042102 150 SVGILGMGRIGTAIAKR--AEAFDCII-GYNSRTEKPN----LN--YKYYPNLIDLAS--NCQILVVACSLTE 211 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~--l~~~G~~V-~~~~~~~~~~----~~--~~~~~~l~el~~--~aDvV~~~lp~~~ 211 (317)
++.|||.|++|++++.. .+..||++ .+||..++.- .+ ....+++++.++ +.|+.++|+|...
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 69999999999999874 35788986 4788765421 11 122456777777 6778999999643
No 374
>PRK15076 alpha-galactosidase; Provisional
Probab=93.80 E-value=0.088 Score=51.85 Aligned_cols=109 Identities=10% Similarity=0.069 Sum_probs=66.2
Q ss_pred CeEEEEecChhHHHHHH--HH---hhC-CCEEEEeCCCCCCCC-------------C----ccccCCHHHhcccCCEEEE
Q 042102 149 KSVGILGMGRIGTAIAK--RA---EAF-DCIIGYNSRTEKPNL-------------N----YKYYPNLIDLASNCQILVV 205 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~el~~~aDvV~~ 205 (317)
++|+|||.|.+|...+- .+ .++ |.+|..+|..++... + .....++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999955433 22 333 458999997653211 1 1124577899999999999
Q ss_pred eccCC--hhh----------hccc-----------------c-------HHHHhccCCCcEEEEeCCCcccCHHHHHHHH
Q 042102 206 ACSLT--EET----------QHIV-----------------N-------RQVINALGPKGVLINIGRGLLVDEHELVSAL 249 (317)
Q Consensus 206 ~lp~~--~~t----------~~li-----------------~-------~~~l~~mk~gavlVN~~rg~~vd~~aL~~al 249 (317)
+.-.. +.- .|++ + .+.++...|++++||.+...=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 86653 111 0111 1 1233445689999999876645555555 33
Q ss_pred HhCCceEEE
Q 042102 250 LQGRLGGAG 258 (317)
Q Consensus 250 ~~g~i~ga~ 258 (317)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445666554
No 375
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.79 E-value=0.083 Score=54.47 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----ccCC---HHH-hcccCCEEEEeccCChhhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YYPN---LID-LASNCQILVVACSLTEETQ 214 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e-l~~~aDvV~~~lp~~~~t~ 214 (317)
..+|-|+|+|++|+.+++.|...|.++.+.|.+++.. .+.. ...+ +++ =++++|.++++.+.++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999998888765421 1211 1122 232 2678999999998777655
Q ss_pred ccccHHHHhccCCCcEEEE
Q 042102 215 HIVNRQVINALGPKGVLIN 233 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN 233 (317)
.++ ...+.+.|...++-
T Consensus 480 ~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred HHH--HHHHHhCCCCeEEE
Confidence 433 23444455555544
No 376
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.69 E-value=0.18 Score=46.13 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.9
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE 181 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~ 181 (317)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 688999999999999999999999996 87776554
No 377
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.66 E-value=0.24 Score=46.80 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=55.1
Q ss_pred cCCeEEEEecChhHHHHHHHHhh-CC-CEEEEeCCCCCCCC---CccccCCHHHhcc--cCCEEEEeccC--Chhhhccc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA-FD-CIIGYNSRTEKPNL---NYKYYPNLIDLAS--NCQILVVACSL--TEETQHIV 217 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~-~G-~~V~~~~~~~~~~~---~~~~~~~l~el~~--~aDvV~~~lp~--~~~t~~li 217 (317)
.|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.. ........+++.. ..|+|+=+... ++.+ +
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~---~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGRGSQSA---I 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCCccHHH---H
Confidence 47899999999999999998885 55 57888887654321 1111011122222 36888877653 2221 2
Q ss_pred cHHHHhccCCCcEEEEeCC
Q 042102 218 NRQVINALGPKGVLINIGR 236 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~r 236 (317)
...++.++++..++.+|-
T Consensus 240 -~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -HHHHHhCcCCcEEEEEee
Confidence 356778999999888764
No 378
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.66 E-value=0.54 Score=44.20 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=62.5
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCC--CCCC-------------C--cc--ccCCHHHhcccCCEEEEe
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTE--KPNL-------------N--YK--YYPNLIDLASNCQILVVA 206 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~--~~~~-------------~--~~--~~~~l~el~~~aDvV~~~ 206 (317)
++|+|+|. |.+|..++..|...|. +|..+|+.. +... + .. ...+. +.++.||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 9999999999988776 488888743 2110 0 00 11243 459999999998
Q ss_pred ccCChh---hh-cc-------cc--HHHHhccCCCcEEEEeCCCcccCHHHHHH----HHHhCCceEEE
Q 042102 207 CSLTEE---TQ-HI-------VN--RQVINALGPKGVLINIGRGLLVDEHELVS----ALLQGRLGGAG 258 (317)
Q Consensus 207 lp~~~~---t~-~l-------i~--~~~l~~mk~gavlVN~~rg~~vd~~aL~~----al~~g~i~ga~ 258 (317)
...... ++ .+ +. ...+....+++++|+++ ..+|.-..+- -+..+++.|.+
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 753211 21 11 10 11233345677877776 5555443222 13345555553
No 379
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.65 E-value=0.63 Score=43.84 Aligned_cols=62 Identities=10% Similarity=0.131 Sum_probs=48.1
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CC-ccccCCHHHhcccCCEEEEe
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LN-YKYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~-~~~~~~l~el~~~aDvV~~~ 206 (317)
.+.|++|++||- +++.++.+..+..+|++|.+..+..-.. .+ .....++++.++.+|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 378999999997 6899999999999999998887644210 01 12246899999999999874
No 380
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.53 E-value=5.3 Score=40.52 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=126.5
Q ss_pred cCCCceEEEECCCCCCc-CChhhHhhCCcEEEeCCCCCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccc
Q 042102 68 SLPKLEIVATCSVGLDK-IDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKF 146 (317)
Q Consensus 68 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l 146 (317)
.+|+ -+|+.=--+..| +.+..-.+..|++.|..- .-+|-.+++.+|+.+|-. +..|
T Consensus 239 ~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi---QGTaaV~lAgll~Alr~~-------------------g~~l 295 (559)
T PTZ00317 239 RWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDDI---QGTGAVIAAGFLNALKLS-------------------GVPP 295 (559)
T ss_pred hCCC-eEEehhhcCCccHHHHHHHhccCCCEecccc---hhHHHHHHHHHHHHHHHh-------------------CCCh
Confidence 4566 355555444433 333333345699999754 445666788888887733 3458
Q ss_pred cCCeEEEEecChhHHHHHHHHhh----CCC-------EEEEeCCCC-----CC--CC-------C-c--cc---cCCHHH
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEA----FDC-------IIGYNSRTE-----KP--NL-------N-Y--KY---YPNLID 195 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~----~G~-------~V~~~~~~~-----~~--~~-------~-~--~~---~~~l~e 195 (317)
...++.|+|.|..|-.+|+.+.. .|. +++.+|+.. .. .. . . .. ..+|.|
T Consensus 296 ~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e 375 (559)
T PTZ00317 296 EEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLED 375 (559)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHH
Confidence 88999999999999999998873 576 677777542 00 00 0 0 11 347999
Q ss_pred hcccC--CEEEEeccCChhhhccccHHHHhccCC---CcEEEEeCCCcccCHHHHHHHHH--hCCceEEEeeCCCCCCCC
Q 042102 196 LASNC--QILVVACSLTEETQHIVNRQVINALGP---KGVLINIGRGLLVDEHELVSALL--QGRLGGAGLDVFEHEPDV 268 (317)
Q Consensus 196 l~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---gavlVN~~rg~~vd~~aL~~al~--~g~i~ga~lDV~~~EP~~ 268 (317)
+++.. |+++-+-- .-|.|.++.++.|.+ .+++.=.|+..---|-.-.++.+ +|+...|. .-|.+
T Consensus 376 ~v~~~KPtvLIG~S~----~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~At-----Gspf~ 446 (559)
T PTZ00317 376 VVRFVKPTALLGLSG----VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVAS-----GSPFP 446 (559)
T ss_pred HHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEE-----CCCCC
Confidence 99998 98876521 247899999999984 89999988865432222223333 45543231 12222
Q ss_pred C----c---ccCCCCceEEcccCCCccHH-----HHHHHHHHHHHHHHHHH
Q 042102 269 P----E---ELIGLENVVLLPHVASATVE-----TRKAMADLVVGNLQAHF 307 (317)
Q Consensus 269 ~----~---~L~~~pnvi~tPH~a~~t~~-----~~~~~~~~~~~nl~~~~ 307 (317)
+ . ..-+..|+++-|=++-..-. .-+.|.-.+++.|-++.
T Consensus 447 pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 497 (559)
T PTZ00317 447 PVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLV 497 (559)
T ss_pred CcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhC
Confidence 1 1 23466799999987642221 12444444555554443
No 381
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.53 E-value=0.16 Score=50.06 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=63.3
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----C-----Ccccc--CCHHHhcccCCEEEEec--cC-Chhh
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----L-----NYKYY--PNLIDLASNCQILVVAC--SL-TEET 213 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----~-----~~~~~--~~l~el~~~aDvV~~~l--p~-~~~t 213 (317)
.-+++|+|+|.+|.++|+.|+..|++|.++|...... . +.... ..-.+.+.++|+|+..- |. +|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 3489999999999999999999999999999654321 0 11111 11234456889887653 32 2221
Q ss_pred h-------ccccH-HHHh-ccCCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 214 Q-------HIVNR-QVIN-ALGPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 214 ~-------~li~~-~~l~-~mk~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
. .++++ +.+. .++...+-|--+.|..--..-+...|+..
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 1 13332 2332 23333344554578877777777777653
No 382
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.48 E-value=0.3 Score=46.05 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=57.2
Q ss_pred eEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCC-----CC----cc-c--c--CCHHHhcccCCEEEEeccCCh-
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPN-----LN----YK-Y--Y--PNLIDLASNCQILVVACSLTE- 211 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~-----~~----~~-~--~--~~l~el~~~aDvV~~~lp~~~- 211 (317)
+|+|||. |.+|..+|-.|...+. ++..+|..+... .. .. . . .++.+.++.||+|+++.....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6899999 9999999998876664 688888755211 00 01 1 1 134689999999998855321
Q ss_pred --hhh--------cccc--HHHHhccCCCcEEEEeCCCcccCH
Q 042102 212 --ETQ--------HIVN--RQVINALGPKGVLINIGRGLLVDE 242 (317)
Q Consensus 212 --~t~--------~li~--~~~l~~mk~gavlVN~~rg~~vd~ 242 (317)
.++ .++. .+.+..-.|++++|+++- ++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 111 1111 122334468999999854 4553
No 383
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.45 E-value=0.27 Score=45.97 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=54.9
Q ss_pred EEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC----------Cc----c-c-cCCHHHhcccCCEEEEeccCChh
Q 042102 151 VGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL----------NY----K-Y-YPNLIDLASNCQILVVACSLTEE 212 (317)
Q Consensus 151 vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~----------~~----~-~-~~~l~el~~~aDvV~~~lp~~~~ 212 (317)
|+|||.|.+|..+|-.+...|. ++..+|....... .. . . ..+ .+.++.||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 5899999999999999988884 7999998654211 00 0 1 123 4689999999998753221
Q ss_pred ---hh--------cccc--HHHHhccCCCcEEEEeC
Q 042102 213 ---TQ--------HIVN--RQVINALGPKGVLINIG 235 (317)
Q Consensus 213 ---t~--------~li~--~~~l~~mk~gavlVN~~ 235 (317)
++ .++. .+.+....|++++|+++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 11 1111 12233445889999987
No 384
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.45 E-value=0.4 Score=45.67 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=45.6
Q ss_pred cccCCeEEEEec---ChhHHHHHHHHh-hCCCEEEEeCCCCCCCC----------C--ccccCCHHHhcccCCEEEEe
Q 042102 145 KFTGKSVGILGM---GRIGTAIAKRAE-AFDCIIGYNSRTEKPNL----------N--YKYYPNLIDLASNCQILVVA 206 (317)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~a~~l~-~~G~~V~~~~~~~~~~~----------~--~~~~~~l~el~~~aDvV~~~ 206 (317)
.+.|+||+++|= +++..+.+..+. .+|++|.+..+..-... + .....++++.++.+|+|..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 488999999999 578888888766 45999987776432110 1 22347899999999999884
No 385
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.44 E-value=0.078 Score=42.11 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=58.0
Q ss_pred ecChhHHHHHHHHhhC----CCEEE-EeCCCC--CCC-----CCccccCCHHHhcc--cCCEEEEeccCChhhhccccHH
Q 042102 155 GMGRIGTAIAKRAEAF----DCIIG-YNSRTE--KPN-----LNYKYYPNLIDLAS--NCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 155 G~G~iG~~~a~~l~~~----G~~V~-~~~~~~--~~~-----~~~~~~~~l~el~~--~aDvV~~~lp~~~~t~~li~~~ 220 (317)
|+|.||+.+++.+... +++|. +++++. ... .......++++++. ..|+|+=|.+. +... +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHH----HH
Confidence 8999999999999765 67764 556651 110 12234578999988 89999988443 2222 33
Q ss_pred HHhccCCCcEEEEeCCCcccC---HHHHHHHHHhCCc
Q 042102 221 VINALGPKGVLINIGRGLLVD---EHELVSALLQGRL 254 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd---~~aL~~al~~g~i 254 (317)
..+.++.|.-+|-.+-+.+.| .+.|.++.+++..
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 455677888889888888873 3355555555443
No 386
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=93.44 E-value=0.44 Score=45.49 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=66.5
Q ss_pred CeEEEEecChhHHHHHHHHhhC--CCEEE-EeCCCCCCC------CCccccCCHHHhcccCCEEEEeccCC-hhhhcccc
Q 042102 149 KSVGILGMGRIGTAIAKRAEAF--DCIIG-YNSRTEKPN------LNYKYYPNLIDLASNCQILVVACSLT-EETQHIVN 218 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~el~~~aDvV~~~lp~~-~~t~~li~ 218 (317)
.+|||||. .+|+.-++.++.. ++++. ++|+..+.. .+...+.+++++++..|++++++|.+ +...| -
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H--~ 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQG--S 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccH--H
Confidence 58999999 6899888888765 46754 677765432 13335789999999999999998743 21111 1
Q ss_pred HHHHhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102 219 RQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA 257 (317)
Q Consensus 219 ~~~l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga 257 (317)
+-..+.|+.|.-++.=--=..-+.++|+++.++..+...
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 223334555533322211113456678888887777633
No 387
>PLN00106 malate dehydrogenase
Probab=93.28 E-value=0.22 Score=47.18 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=58.0
Q ss_pred cCCeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCC--CC-------cc-----ccCCHHHhcccCCEEEEeccC
Q 042102 147 TGKSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPN--LN-------YK-----YYPNLIDLASNCQILVVACSL 209 (317)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~--~~-------~~-----~~~~l~el~~~aDvV~~~lp~ 209 (317)
..++|+|+|. |++|..+|..|...+. ++..+|..+... .+ .. ...++.+.++.||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4569999999 9999999999985554 788888755111 00 01 123457899999999887443
Q ss_pred Ch---hhhc-cc--c----HH---HHhccCCCcEEEEeCCCc
Q 042102 210 TE---ETQH-IV--N----RQ---VINALGPKGVLINIGRGL 238 (317)
Q Consensus 210 ~~---~t~~-li--~----~~---~l~~mk~gavlVN~~rg~ 238 (317)
.. .++. ++ | ++ .+....+.+++++++-.-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 11 1121 11 1 12 233345889999986543
No 388
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.28 E-value=0.81 Score=43.34 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=60.9
Q ss_pred eEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCC--CCCCC-------c--------cccCCHHHhcccCCEEE
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTE--KPNLN-------Y--------KYYPNLIDLASNCQILV 204 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~el~~~aDvV~ 204 (317)
+|+|+|. |.+|+.++..|...|. .+..+|... ....+ . ....+..+.++.||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999998876553 478888765 32111 0 01145678999999998
Q ss_pred EeccC--Ch-hhhc-cc--c----H---HHHhcc-CCCcEEEEeCCCcccCHHHHHHHHHhC
Q 042102 205 VACSL--TE-ETQH-IV--N----R---QVINAL-GPKGVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 205 ~~lp~--~~-~t~~-li--~----~---~~l~~m-k~gavlVN~~rg~~vd~~aL~~al~~g 252 (317)
++.-. .+ +++- ++ | + ..+... +|++++|.++ ..+|.-..+-.-.+|
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~sg 141 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKNAP 141 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHHcC
Confidence 87432 11 1211 11 1 1 123334 5888888885 666655444333333
No 389
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.21 E-value=0.47 Score=44.70 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=56.1
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC--EEEEeCCCCCCCC---------C-cc-c---c-CCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC--IIGYNSRTEKPNL---------N-YK-Y---Y-PNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~---------~-~~-~---~-~~l~el~~~aDvV~~~lp~~ 210 (317)
++|+|||. |.+|..+|-.+...|. ++..+|.. .... . .. . . .++.+.++.||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 9999999999987775 68888765 2210 0 01 1 1 23468899999999875432
Q ss_pred --h-hhhc-cc--cH-------HHHhccCCCcEEEEeCC
Q 042102 211 --E-ETQH-IV--NR-------QVINALGPKGVLINIGR 236 (317)
Q Consensus 211 --~-~t~~-li--~~-------~~l~~mk~gavlVN~~r 236 (317)
+ ++|- ++ |. +.+..-.|.+++|+++-
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 1 1221 11 11 22334468999999864
No 390
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.15 E-value=0.24 Score=46.93 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=44.6
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCC--CEEEEeCCCCCCC--CC-------ccc--c---CCHHHhcccCCEEEEec
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFD--CIIGYNSRTEKPN--LN-------YKY--Y---PNLIDLASNCQILVVAC 207 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~--~~-------~~~--~---~~l~el~~~aDvV~~~l 207 (317)
-++.++|+|+|. |.+|+.+|..+...+ .++..+|...... .+ ... . .+..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356779999999 999999999998544 4788888732111 01 111 1 12268899999998875
Q ss_pred cC
Q 042102 208 SL 209 (317)
Q Consensus 208 p~ 209 (317)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 54
No 391
>PRK14851 hypothetical protein; Provisional
Probab=93.13 E-value=0.21 Score=51.94 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=31.2
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|++++|+|+|+|.+|..+++.|...|. ++...|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46899999999999999999999999887 5666653
No 392
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.07 E-value=0.15 Score=47.76 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=44.2
Q ss_pred CeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc-------ccCCHHHhcccCCEEEEecc
Q 042102 149 KSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK-------YYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 149 ~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~-------~~~~l~el~~~aDvV~~~lp 208 (317)
++|.|.| .|.+|+.+++.|...|++|.+..|+..+. .+.. ...++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4789999 59999999999999999999888764321 1111 12346778999998887644
No 393
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=93.07 E-value=0.98 Score=42.15 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=70.1
Q ss_pred CCeEEEEec-ChhHHHHHHHHhhCCCE-EEEeCCC--CCCCCCccccCCHHHhccc--CCEEEEeccCChhhhccccHHH
Q 042102 148 GKSVGILGM-GRIGTAIAKRAEAFDCI-IGYNSRT--EKPNLNYKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 148 g~~vgIiG~-G~iG~~~a~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~ 221 (317)
..+|.|.|. |.+|+.+.+.|..+|++ |+..++. .....+...+.++.++-.. .|+.++++|... +...+. +.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~-v~~~l~-e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPF-AADAIL-EA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHH-HHHHHH-HH
Confidence 347888888 77999999999999885 3355665 3334566678899999887 899999999442 232332 22
Q ss_pred HhccC-CCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102 222 INALG-PKGVLINIGRGLLVDEHELVSALLQGRLGGA 257 (317)
Q Consensus 222 l~~mk-~gavlVN~~rg~~vd~~aL~~al~~g~i~ga 257 (317)
.+ .. +.++++.-+-+ +-|++.|.+..+++.++-.
T Consensus 86 ~~-~gvk~avI~s~Gf~-~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 86 ID-AGIDLIVCITEGIP-VLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred HH-CCCCEEEEECCCCC-HHHHHHHHHHHHHcCCEEE
Confidence 22 22 23444444433 3344588888888887743
No 394
>PRK14852 hypothetical protein; Provisional
Probab=93.06 E-value=1.1 Score=48.15 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=90.0
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCC------C-------CCC-------------------cc--
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEK------P-------NLN-------------------YK-- 188 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~------~-------~~~-------------------~~-- 188 (317)
..|+.++|+|+|+|.+|..+++.|...|. ++...|...- . ..+ ..
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 35789999999999999999999999997 5665553210 0 000 00
Q ss_pred ----ccCCHHHhcccCCEEEEeccCC-hhhhccccHHHHhccCCCcEEEEeCC------------CcccCHHHHHH----
Q 042102 189 ----YYPNLIDLASNCQILVVACSLT-EETQHIVNRQVINALGPKGVLINIGR------------GLLVDEHELVS---- 247 (317)
Q Consensus 189 ----~~~~l~el~~~aDvV~~~lp~~-~~t~~li~~~~l~~mk~gavlVN~~r------------g~~vd~~aL~~---- 247 (317)
...+.+++++.+|+|+-++-.- -+.+..++..- .+.|.-+|..+- ++..+++ +++
T Consensus 408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~-~f~~~~~ 483 (989)
T PRK14852 408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALLVFMPGGMNFDS-YFGIDDD 483 (989)
T ss_pred ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEEEEcCCCCCHHH-hCCCCCC
Confidence 1135677889999999877542 12333333322 233333444432 1111111 000
Q ss_pred -HHHhCCceEEEeeCCCCCCCCCc-ccCCCCceEEcccCCCccHHHHHHHHHHHHHHHHHHHCCCC
Q 042102 248 -ALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKP 311 (317)
Q Consensus 248 -al~~g~i~ga~lDV~~~EP~~~~-~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 311 (317)
-..+|-++ ..+ ...|.+-. ..++..++-+.=+.+-++.-+..-.+..+.....+++-|+.
T Consensus 484 ~p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~ 545 (989)
T PRK14852 484 TPPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR 545 (989)
T ss_pred CchHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence 00111111 111 22232212 33455666565577777777788888899999999998873
No 395
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.06 E-value=0.17 Score=47.50 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=46.4
Q ss_pred CeEEEEecChhHH-HHHHHHhhCC--CE-EEEeCCCCCCC------CCc-cccCCHHHhccc--CCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGT-AIAKRAEAFD--CI-IGYNSRTEKPN------LNY-KYYPNLIDLASN--CQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~-~~a~~l~~~G--~~-V~~~~~~~~~~------~~~-~~~~~l~el~~~--aDvV~~~lp~~~~ 212 (317)
.++||||+|.+++ ..+..++..+ +. |.++|+++... .+. ..+.+++++++. .|+|+++.|....
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 5899999997774 5777887776 44 55778876532 122 356789999886 5899999997654
No 396
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.06 E-value=0.2 Score=47.81 Aligned_cols=85 Identities=19% Similarity=0.325 Sum_probs=58.1
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCCC------Ccccc----C-C----HHHhc--ccCCEEEEeccC
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNL------NYKYY----P-N----LIDLA--SNCQILVVACSL 209 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~~------~~~~~----~-~----l~el~--~~aDvV~~~lp~ 209 (317)
+.+|.|+|.|.||...+..++.+|+ +|++.|+++.+.. +.... . + ..++- ..+|+++-|..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999999999999999997 6778887664321 11111 1 1 11233 24899999987
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~rg 237 (317)
++.+ -...++..+++..++.+|-.
T Consensus 248 ~~~~----~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 SPPA----LDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CHHH----HHHHHHHhcCCCEEEEEecc
Confidence 3221 24667788999998888753
No 397
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.99 E-value=0.35 Score=45.50 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=56.3
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccccCCH-HHhcccCCEEEEeccCChhhhccccHH
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKYYPNL-IDLASNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l-~el~~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
.|.+|.|.|.|.+|...++.++.+|++|++.++++++. .++....+. ++.-...|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 47899999999999999999999999988877765432 122111111 11112357666554432 1 1 245
Q ss_pred HHhccCCCcEEEEeCC
Q 042102 221 VINALGPKGVLINIGR 236 (317)
Q Consensus 221 ~l~~mk~gavlVN~~r 236 (317)
.++.++++..++.+|.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788999999988874
No 398
>PRK08328 hypothetical protein; Provisional
Probab=92.91 E-value=0.12 Score=46.51 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.5
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999998 67777643
No 399
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.90 E-value=0.15 Score=50.83 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=66.4
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcccc--CCHHHhcccCCEEEEe--cc-CChhh
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYKYY--PNLIDLASNCQILVVA--CS-LTEET 213 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~~~--~~l~el~~~aDvV~~~--lp-~~~~t 213 (317)
.+.+++|.|+|+|..|.++|+.|...|++|.++|+..... .+.... ....+.+.++|+|+.. +| .++..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 5788999999999999999999999999999999753321 111111 1123445678988775 22 22321
Q ss_pred -------hccccHHHHhc-------c-CCCcE-EEEeCCCcccCHHHHHHHHHhCC
Q 042102 214 -------QHIVNRQVINA-------L-GPKGV-LINIGRGLLVDEHELVSALLQGR 253 (317)
Q Consensus 214 -------~~li~~~~l~~-------m-k~gav-lVN~~rg~~vd~~aL~~al~~g~ 253 (317)
..++++-.+.. + ++..+ -|--+.|..--..-|.+.|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 11233333321 1 12223 34445688777777777777543
No 400
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=92.82 E-value=0.21 Score=38.37 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=41.1
Q ss_pred CeEEEEecChhHHHHHHHH-hhCCCEE-EEeCCCCCCC----CCccccCCHHHhccc--CCEEEEeccCCh
Q 042102 149 KSVGILGMGRIGTAIAKRA-EAFDCII-GYNSRTEKPN----LNYKYYPNLIDLASN--CQILVVACSLTE 211 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l-~~~G~~V-~~~~~~~~~~----~~~~~~~~l~el~~~--aDvV~~~lp~~~ 211 (317)
.++.|+|+|+.|++++... ...|+++ .++|..++.. .+...+.+++++.+. .|+-++++|...
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~ 74 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEA 74 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHH
Confidence 4799999999999887544 3556643 4555544422 233334567777665 999999998543
No 401
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.80 E-value=0.27 Score=46.55 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=22.5
Q ss_pred eEEEEecChhHHHHHHHHhhCC----CEEEEe
Q 042102 150 SVGILGMGRIGTAIAKRAEAFD----CIIGYN 177 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G----~~V~~~ 177 (317)
+|||+|+|+||+.+.+.+...+ ++|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 5899999999999999987543 666544
No 402
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.76 E-value=0.34 Score=46.12 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=51.5
Q ss_pred cCCeEEEEec-ChhHHHHHHHHhh--CCC-EEEEeC-C-CCCCCCCc----cccCCHHHh-cccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGM-GRIGTAIAKRAEA--FDC-IIGYNS-R-TEKPNLNY----KYYPNLIDL-ASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~a~~l~~--~G~-~V~~~~-~-~~~~~~~~----~~~~~l~el-~~~aDvV~~~lp~~~~t~~ 215 (317)
.+.+|+|||. |.+|+.+.+.|.. +-. ++.... . +..+.... ....++++. ++++|++++++|...+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s--- 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREAS--- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHH---
Confidence 4678999998 9999999999987 443 554442 2 21111111 111234443 3789999999985432
Q ss_pred cccHHHHhcc-CCCcEEEEeC
Q 042102 216 IVNRQVINAL-GPKGVLINIG 235 (317)
Q Consensus 216 li~~~~l~~m-k~gavlVN~~ 235 (317)
.+....+ +.|..+||.|
T Consensus 80 ---~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 80 ---AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred ---HHHHHHHHHCCCEEEECC
Confidence 2333322 5688899887
No 403
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=92.67 E-value=1 Score=42.94 Aligned_cols=61 Identities=5% Similarity=-0.076 Sum_probs=45.0
Q ss_pred c-cCCeEEEEecC-------hhHHHHHHHHhhCCCEEEEeCC-CCCCC--------------CC--ccccCCHHHhcccC
Q 042102 146 F-TGKSVGILGMG-------RIGTAIAKRAEAFDCIIGYNSR-TEKPN--------------LN--YKYYPNLIDLASNC 200 (317)
Q Consensus 146 l-~g~~vgIiG~G-------~iG~~~a~~l~~~G~~V~~~~~-~~~~~--------------~~--~~~~~~l~el~~~a 200 (317)
+ .|+||+|+|.| ++.++++..+..||++|.+..+ ..-.. .+ .....++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999887654 6888888889999999988877 32110 01 22357899999999
Q ss_pred CEEEEe
Q 042102 201 QILVVA 206 (317)
Q Consensus 201 DvV~~~ 206 (317)
|+|..-
T Consensus 246 Dvvy~~ 251 (335)
T PRK04523 246 DVVYAK 251 (335)
T ss_pred CEEEec
Confidence 999764
No 404
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=92.66 E-value=0.65 Score=45.70 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=61.5
Q ss_pred ccccCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C-CccccCCHHH-hcccCCEEEEeccCC
Q 042102 144 TKFTGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L-NYKYYPNLID-LASNCQILVVACSLT 210 (317)
Q Consensus 144 ~~l~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~-~~~~~~~l~e-l~~~aDvV~~~lp~~ 210 (317)
..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+..... . .......+++ .+..||.|+++....
T Consensus 310 ~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h~ 389 (425)
T PRK15182 310 INVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGHQ 389 (425)
T ss_pred CCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCCH
Confidence 4578999999999 5678899999999999999999873221 1 0000111222 467899999998755
Q ss_pred hhhhccccHHHHh-ccCCCcEEEEeCCCcc
Q 042102 211 EETQHIVNRQVIN-ALGPKGVLINIGRGLL 239 (317)
Q Consensus 211 ~~t~~li~~~~l~-~mk~gavlVN~~rg~~ 239 (317)
+ .+. ++-+.+. .||...++|+ +|+-+
T Consensus 390 ~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 390 Q-FKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred H-hhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 4 222 4444443 4554568888 46554
No 405
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.66 E-value=0.22 Score=46.87 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=41.7
Q ss_pred eEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCC----------C------ccccCCHHHhcccCCEEEEecc
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNL----------N------YKYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~----------~------~~~~~~l~el~~~aDvV~~~lp 208 (317)
+|+|||.|.+|..+|..|...|. ++..+|...+... . .....+-.+.++.||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998876665 6888887543211 0 0111223578999999999754
No 406
>PRK05442 malate dehydrogenase; Provisional
Probab=92.65 E-value=1.1 Score=42.56 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=57.2
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC---------------ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN---------------YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~el~~~aDvV 203 (317)
++|+|||. |.+|..+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 58999998 9999999988765443 68888864321 100 01123456889999999
Q ss_pred EEeccCC--h-hhhc-cc--c----HH---HHhc-cCCCcEEEEeCCCcccCHHHH
Q 042102 204 VVACSLT--E-ETQH-IV--N----RQ---VINA-LGPKGVLINIGRGLLVDEHEL 245 (317)
Q Consensus 204 ~~~lp~~--~-~t~~-li--~----~~---~l~~-mk~gavlVN~~rg~~vd~~aL 245 (317)
+++.-.. + +++- ++ | ++ .+.. .++.+++|.++ ..+|.-..
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~ 138 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNAL 138 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHH
Confidence 8875421 1 1221 11 1 11 1222 33689999987 55655443
No 407
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.62 E-value=0.12 Score=45.27 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=32.8
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
+.|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 56899999999999999999999999998 57777654
No 408
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.47 E-value=0.18 Score=50.03 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred cccccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC----------CCcccc--CCHHHhcccCCEEEEecc--
Q 042102 143 TTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----------LNYKYY--PNLIDLASNCQILVVACS-- 208 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~el~~~aDvV~~~lp-- 208 (317)
+..+.+++|.|+|.|.+|.++|+.|+..|++|.++|+..... .+.... ... +....+|+|+++.-
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence 345789999999999999999999999999999998654211 111111 111 13456898888753
Q ss_pred -CChh-----hhc--cccH-HHH-hccCC---C-cEEEEeCCCcccCHHHHHHHHHhC
Q 042102 209 -LTEE-----TQH--IVNR-QVI-NALGP---K-GVLINIGRGLLVDEHELVSALLQG 252 (317)
Q Consensus 209 -~~~~-----t~~--li~~-~~l-~~mk~---g-avlVN~~rg~~vd~~aL~~al~~g 252 (317)
.++. ..+ ++++ +.+ ..+.+ . .+-|--+.|..--..-+.+.|+..
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 3332 111 2332 222 33422 1 233444568777766777777653
No 409
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.40 E-value=0.4 Score=45.43 Aligned_cols=94 Identities=10% Similarity=0.127 Sum_probs=57.9
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC---------------ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN---------------YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~el~~~aDvV 203 (317)
.+|+|||. |.+|+.+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999886664 68888874321 110 01113556889999999
Q ss_pred EEeccCCh---hhhc-cc--cHH-------HHhccCC-CcEEEEeCCCcccCHHH
Q 042102 204 VVACSLTE---ETQH-IV--NRQ-------VINALGP-KGVLINIGRGLLVDEHE 244 (317)
Q Consensus 204 ~~~lp~~~---~t~~-li--~~~-------~l~~mk~-gavlVN~~rg~~vd~~a 244 (317)
+++.-... +|+- ++ |.+ .+....| .++++.++ ..+|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 98754321 1221 11 111 2233344 88999886 5555443
No 410
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.39 E-value=0.64 Score=43.26 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=32.6
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..|...+|.|+|+|.+|.++|+.|...|. ++..+|..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 46889999999999999999999999998 57777754
No 411
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.38 E-value=0.5 Score=44.32 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=54.9
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc---cC--C-HHHhcccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY---YP--N-LIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~---~~--~-l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.|.++.|.|.|.+|+.+++.++++|++|++.+++.... .+... .. + ..+.-...|+++-+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 46799999999999999999999999998887654321 01110 00 0 1122345677776665321
Q ss_pred cccHHHHhccCCCcEEEEeCC
Q 042102 216 IVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~r 236 (317)
.....++.+++++.+++++.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 12455677777777777764
No 412
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.28 E-value=0.56 Score=44.10 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred eEEEEec-ChhHHHHHHHHhhCC-CEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc-cC
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFD-CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA-LG 226 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~-mk 226 (317)
+|+|+|. |-.|.++.++|..-- +++........ ....+.+++++++|++++++|...+ . +.... .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~~~~~~~~~~~~~D~vFlalp~~~s-~-----~~~~~~~~ 71 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----KDAAERAKLLNAADVAILCLPDDAA-R-----EAVSLVDN 71 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----cCcCCHhHhhcCCCEEEECCCHHHH-H-----HHHHHHHh
Confidence 7899985 889999999998654 45554432211 1122456777899999999995533 2 22222 24
Q ss_pred CCcEEEEeC
Q 042102 227 PKGVLINIG 235 (317)
Q Consensus 227 ~gavlVN~~ 235 (317)
.|..+||.|
T Consensus 72 ~g~~VIDlS 80 (310)
T TIGR01851 72 PNTCIIDAS 80 (310)
T ss_pred CCCEEEECC
Confidence 678888887
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.27 E-value=0.41 Score=44.39 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=44.1
Q ss_pred cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC---------C----Ccc-------ccCCHHHhcccCCEEEE
Q 042102 147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN---------L----NYK-------YYPNLIDLASNCQILVV 205 (317)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---------~----~~~-------~~~~l~el~~~aDvV~~ 205 (317)
.|++|.|.| .|-||+.+++.|...|.+|.+..++.... . ... ....++++++.+|+|+-
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 368999999 69999999999999999998766543210 0 000 12346677888998776
Q ss_pred ecc
Q 042102 206 ACS 208 (317)
Q Consensus 206 ~lp 208 (317)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 414
>PRK10206 putative oxidoreductase; Provisional
Probab=92.25 E-value=0.27 Score=46.87 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=42.6
Q ss_pred CeEEEEecChhHHH-HHHHH-hh-CCCEEE-EeCCCCCCC-----C-CccccCCHHHhcc--cCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTA-IAKRA-EA-FDCIIG-YNSRTEKPN-----L-NYKYYPNLIDLAS--NCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~-~a~~l-~~-~G~~V~-~~~~~~~~~-----~-~~~~~~~l~el~~--~aDvV~~~lp~~~~ 212 (317)
.++||||+|.+++. .+..+ .. -+++|. ++|++++.. . ....+.+++++++ +.|+|++++|....
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 37999999998763 34444 32 357764 678765322 1 1234578999996 57999999997543
No 415
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.24 E-value=0.27 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=32.9
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 68777764
No 416
>PRK07877 hypothetical protein; Provisional
Probab=92.23 E-value=0.3 Score=51.09 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=54.9
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC--EEEEeCCCCC------CC------CC-----------------c--c--
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC--IIGYNSRTEK------PN------LN-----------------Y--K-- 188 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~------~~------~~-----------------~--~-- 188 (317)
..|++++|+|+|+| +|+.+|..|...|. ++...|...- .. .+ . .
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999 99999999998884 6666653210 00 00 0 0
Q ss_pred ----ccCCHHHhcccCCEEEEeccCChhhhccccHHHHhc
Q 042102 189 ----YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA 224 (317)
Q Consensus 189 ----~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l~~ 224 (317)
...+++++++.+|+|+-|+- +-+++.++++.-.+.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 01357788999998888776 456788888665543
No 417
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.20 E-value=0.64 Score=44.44 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=50.1
Q ss_pred cCCeEEEEec-ChhHHHHHHHHhh-CCCE---EEEe-CC-CCCCCCCc-----c-ccCCHHHhcccCCEEEEeccCChhh
Q 042102 147 TGKSVGILGM-GRIGTAIAKRAEA-FDCI---IGYN-SR-TEKPNLNY-----K-YYPNLIDLASNCQILVVACSLTEET 213 (317)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~a~~l~~-~G~~---V~~~-~~-~~~~~~~~-----~-~~~~l~el~~~aDvV~~~lp~~~~t 213 (317)
++.+|||||. |..|+.+.+.|.. -.+. +..+ +. +..+.... . ...+.++ ++++|++++++|...
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~~-- 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGEV-- 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChHH--
Confidence 3468999998 9999999999984 4444 4333 22 22111111 0 1123333 478999999998542
Q ss_pred hccccHHHHhc-cCCCcEEEEeC
Q 042102 214 QHIVNRQVINA-LGPKGVLINIG 235 (317)
Q Consensus 214 ~~li~~~~l~~-mk~gavlVN~~ 235 (317)
.++.... .+.|+++||.|
T Consensus 81 ----s~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 81 ----SRQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred ----HHHHHHHHHHCCCEEEECc
Confidence 2333322 35688899887
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.18 E-value=0.18 Score=51.14 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=31.8
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
-.|+++.|.|. |.||+.+++.|...|++|.+..|+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 46889999997 9999999999999999998887754
No 419
>PLN02214 cinnamoyl-CoA reductase
Probab=92.14 E-value=0.39 Score=45.51 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=46.4
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC------------CCcc-------ccCCHHHhcccCCEEE
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN------------LNYK-------YYPNLIDLASNCQILV 204 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~------------~~~~-------~~~~l~el~~~aDvV~ 204 (317)
.+.+++|.|.|. |.||+.+++.|...|.+|.+..|+.... .... ...++.++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367889999998 9999999999999999998877654310 0011 1234567788899877
Q ss_pred Eecc
Q 042102 205 VACS 208 (317)
Q Consensus 205 ~~lp 208 (317)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 6654
No 420
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.09 E-value=0.16 Score=44.54 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=32.3
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~ 180 (317)
+.|++.+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46889999999999999999999999998 57777653
No 421
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.03 E-value=1 Score=42.80 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=59.2
Q ss_pred CeEEEEecChhHHHHHHHHhh--------CC--CEEEE-eCCCCCC--CCCc---------------c-c-------cCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEA--------FD--CIIGY-NSRTEKP--NLNY---------------K-Y-------YPN 192 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~--------~G--~~V~~-~~~~~~~--~~~~---------------~-~-------~~~ 192 (317)
.+|+|+|+|++|+.+++.+.. +| .+|.+ .+++... ..+. . + ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998865 56 56543 3432110 0000 0 0 115
Q ss_pred HHHhc--ccCCEEEEeccCChhhhccccHHHHhccCCCcEEEEeCCCccc-CHHHHHHHHHhCCce
Q 042102 193 LIDLA--SNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV-DEHELVSALLQGRLG 255 (317)
Q Consensus 193 l~el~--~~aDvV~~~lp~~~~t~~li~~~~l~~mk~gavlVN~~rg~~v-d~~aL~~al~~g~i~ 255 (317)
+++++ ..+|+|+-+.+.. ... .-..+.++.|.-+|-..-|.+. ..+.|.+..++....
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence 66776 5799998776432 122 2233445667666655555443 555666666555544
No 422
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.01 E-value=0.74 Score=44.30 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=30.6
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
.|.+|.|.|.|.+|..+++.++.+|++|++.+++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5889999999999999999999999998877654
No 423
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.98 E-value=0.3 Score=46.28 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=31.5
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
+++++|.|.|. |-||+.+++.|...|.+|+++++.
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56789999995 999999999999999999988864
No 424
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.89 E-value=0.15 Score=45.24 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=45.4
Q ss_pred EEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-------CCcc-------ccCCHHHhcccCCEEEEeccCC
Q 042102 151 VGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-------LNYK-------YYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 151 vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------~~~~-------~~~~l~el~~~aDvV~~~lp~~ 210 (317)
|.|+|. |.+|+.+++.|..-+++|.+.-|..... .+.. ...++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678896 9999999999999999998877765321 1111 1235777899999999999954
No 425
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.84 E-value=0.37 Score=44.05 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=44.0
Q ss_pred eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--C-------ccccCCHHHhc------cc-CCEEEEeccCC
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--N-------YKYYPNLIDLA------SN-CQILVVACSLT 210 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~el~------~~-aDvV~~~lp~~ 210 (317)
+|.|.|. |.+|+.+++.|...|++|.+..|++.... + .....++.+++ .. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 4678887 99999999999999999998888764321 1 11123455666 45 89998887754
No 426
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=91.80 E-value=0.43 Score=48.03 Aligned_cols=134 Identities=20% Similarity=0.191 Sum_probs=87.7
Q ss_pred ccccCCeEEEEecChh-HHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHHHH
Q 042102 144 TKFTGKSVGILGMGRI-GTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVI 222 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~i-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~~l 222 (317)
-.+.|++..++|-..| |..++..|+....+|..+-. ...++.|.+.++|+|+.++--. +++-.+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHS---------KT~~lae~v~~ADIvIvAiG~P----efVKgd-- 222 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHS---------KTRNLAEKVSRADIVIVAIGQP----EFVKGD-- 222 (935)
T ss_pred CccccceeEEEecccccCChHHHHHHhcCceEEEecC---------CCccHHHHhccCCEEEEEcCCc----ceeecc--
Confidence 4588999999998865 89999999999999887642 1347889999999999998733 344443
Q ss_pred hccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEEEeeCCCCCCCCCcccCCCCceEEcccCCCccHHHHHHHHHHHHHH
Q 042102 223 NALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGN 302 (317)
Q Consensus 223 ~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga~lDV~~~EP~~~~~L~~~pnvi~tPH~a~~t~~~~~~~~~~~~~n 302 (317)
.+|||+++|++|--.+-|. .-++|.- ..-||...+-. .. --.+||-=||...-...-+.+.+++.
T Consensus 223 -WiKpGavVIDvGINyvpD~-----~Kksg~k--lvGDVdfe~Ak---ev----as~ITPVPGGVGPMTVAMLmqNtvea 287 (935)
T KOG4230|consen 223 -WIKPGAVVIDVGINYVPDP-----SKKSGFK--LVGDVDFESAK---EV----ASFITPVPGGVGPMTVAMLMQNTVEA 287 (935)
T ss_pred -cccCCcEEEEccccccCCC-----CCcccce--EeeecchHhhh---hh----hhccccCCCCcchHHHHHHHHHHHHH
Confidence 3699999999987666553 1223332 24566443321 00 12578877776655444444444444
Q ss_pred HHHHH
Q 042102 303 LQAHF 307 (317)
Q Consensus 303 l~~~~ 307 (317)
-.+++
T Consensus 288 AKR~r 292 (935)
T KOG4230|consen 288 AKRQR 292 (935)
T ss_pred HHHHH
Confidence 44444
No 427
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.74 E-value=0.45 Score=45.08 Aligned_cols=93 Identities=9% Similarity=0.106 Sum_probs=57.2
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCC-------CEEEEeCCCCCC--CCC----cc-----------ccCCHHHhcccCCEE
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFD-------CIIGYNSRTEKP--NLN----YK-----------YYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G-------~~V~~~~~~~~~--~~~----~~-----------~~~~l~el~~~aDvV 203 (317)
.+|+|+|. |.+|+.++..|...+ .+|..+|+.... ..+ .. ...++.+.++.||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 37999999 999999999997644 478888874421 111 00 124567889999998
Q ss_pred EEeccCCh---hhh-ccc--cH-------HHHhcc-CCCcEEEEeCCCcccCHH
Q 042102 204 VVACSLTE---ETQ-HIV--NR-------QVINAL-GPKGVLINIGRGLLVDEH 243 (317)
Q Consensus 204 ~~~lp~~~---~t~-~li--~~-------~~l~~m-k~gavlVN~~rg~~vd~~ 243 (317)
+.+.-... .++ .++ |. ..+... ++++++|.++ ..+|.-
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~ 134 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTN 134 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHH
Confidence 87744321 111 111 11 123334 5788888887 355443
No 428
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=91.70 E-value=0.87 Score=45.90 Aligned_cols=91 Identities=8% Similarity=0.049 Sum_probs=64.3
Q ss_pred cccCCeEEEEec---ChhHHHHHHHHhhCC-CEEEEeCCCCCC-C---------CC--ccccCCHHHhcccCCEE--EE-
Q 042102 145 KFTGKSVGILGM---GRIGTAIAKRAEAFD-CIIGYNSRTEKP-N---------LN--YKYYPNLIDLASNCQIL--VV- 205 (317)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G-~~V~~~~~~~~~-~---------~~--~~~~~~l~el~~~aDvV--~~- 205 (317)
.+.|++|+++|= |++.++.+..+..|| ++|.+..+..-. . .+ .....++++.++++|+. ..
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 478999999998 588999999999998 899887764321 1 01 22357899999999952 22
Q ss_pred ------eccCC-----hh--hhccccHHHHhccCCCcEEEEeC
Q 042102 206 ------ACSLT-----EE--TQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 206 ------~lp~~-----~~--t~~li~~~~l~~mk~gavlVN~~ 235 (317)
..... .. -...++++.++.+|++++|.-+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12111 01 12356899999999999998875
No 429
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.67 E-value=0.48 Score=45.04 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=49.9
Q ss_pred CCeEEEEec-ChhHHHHHHHHhhCCC---EEEEeCCCCC--CCCCc----cccCCHH-HhcccCCEEEEeccCChhhhcc
Q 042102 148 GKSVGILGM-GRIGTAIAKRAEAFDC---IIGYNSRTEK--PNLNY----KYYPNLI-DLASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 148 g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~~~~~~--~~~~~----~~~~~l~-el~~~aDvV~~~lp~~~~t~~l 216 (317)
+++|+|+|. |.+|+.+++.|..-|+ ++.+..+... ..... ....+++ +.++.+|+|++++|....
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s---- 76 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS---- 76 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH----
Confidence 468999995 8999999999988554 4444433221 11110 0111111 334789999999885432
Q ss_pred ccHHHHhc-cCCCcEEEEeCC
Q 042102 217 VNRQVINA-LGPKGVLINIGR 236 (317)
Q Consensus 217 i~~~~l~~-mk~gavlVN~~r 236 (317)
++..+. ++.|+++|+.|.
T Consensus 77 --~~~~~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 77 --KKYAPKAAAAGAVVIDNSS 95 (334)
T ss_pred --HHHHHHHHhCCCEEEECCc
Confidence 222222 357889998773
No 430
>PRK12937 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.64 Score=41.04 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=29.8
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCC
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSR 179 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~ 179 (317)
+.++++.|.|. |.||+.+|+.+...|++|+...+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 67899999995 99999999999999999876554
No 431
>PRK06523 short chain dehydrogenase; Provisional
Probab=91.64 E-value=1 Score=40.33 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.1
Q ss_pred ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
..+.|+++.|.|. |.||+.+++.|...|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4588999999996 79999999999999999998887643
No 432
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.62 E-value=0.4 Score=46.67 Aligned_cols=83 Identities=5% Similarity=-0.050 Sum_probs=50.2
Q ss_pred CCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC---CCcc----ccCC---HHHh-cccCCEEEEeccCChhhhcc
Q 042102 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN---LNYK----YYPN---LIDL-ASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 148 g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~----~~~~---l~el-~~~aDvV~~~lp~~~~t~~l 216 (317)
..++-|+|+|.+|+.+++.|+..|.++.+.+...... .+.. ...+ ++++ +++|+.|+++.+.++++..+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 5689999999999999999999898877666432111 1110 0112 2222 66788888777766554432
Q ss_pred ccHHHHhccCCCcEEE
Q 042102 217 VNRQVINALGPKGVLI 232 (317)
Q Consensus 217 i~~~~l~~mk~gavlV 232 (317)
....+.+.|+..+|
T Consensus 320 --vL~ar~l~p~~kII 333 (393)
T PRK10537 320 --VLAAKEMSSDVKTV 333 (393)
T ss_pred --HHHHHHhCCCCcEE
Confidence 23344555544433
No 433
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.59 E-value=0.19 Score=47.09 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=34.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP 183 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~ 183 (317)
.|.|++|+|+|.+|.++++-+++.|+ ++++.|.++++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 68999999999999999999999998 89999987654
No 434
>PRK06153 hypothetical protein; Provisional
Probab=91.59 E-value=0.19 Score=48.54 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=32.0
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|++++|+|||+|.+|..++..|...|. ++..+|.
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 36899999999999999999999999997 6777764
No 435
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=91.58 E-value=0.81 Score=43.73 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=49.8
Q ss_pred cCCeEEEEec-ChhHHHHHHHHhhCCC---EEEEe--CCCCCCCCCc--c--ccCCH-HHhcccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGM-GRIGTAIAKRAEAFDC---IIGYN--SRTEKPNLNY--K--YYPNL-IDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~--~~~~~~~~~~--~--~~~~l-~el~~~aDvV~~~lp~~~~t~~ 215 (317)
...+|+|+|. |.+|+.+.+.|...++ ++.+. .++..+.... . ...++ .+.+..+|+|++++|...+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s--- 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS--- 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH---
Confidence 3568999995 8999999999987554 34322 2332221111 0 11111 2345889999999985532
Q ss_pred cccHHHHhc-cCCCcEEEEeC
Q 042102 216 IVNRQVINA-LGPKGVLINIG 235 (317)
Q Consensus 216 li~~~~l~~-mk~gavlVN~~ 235 (317)
++.... .+.|+.+||.|
T Consensus 83 ---~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 83 ---KKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ---HHHHHHHHhCCCEEEECC
Confidence 222222 25688899987
No 436
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.56 E-value=0.62 Score=42.08 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=56.7
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CC-ccccCCHH-Hh--cccCCEEEEeccCChhhhcc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LN-YKYYPNLI-DL--ASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~-~~~~~~l~-el--~~~aDvV~~~lp~~~~t~~l 216 (317)
.|.++.|.|.|.+|+.+++.++.+|.+ |++.+++.... .+ ........ .. -...|+++.++....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----- 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----- 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence 578999999999999999999999998 88877653321 11 01000011 11 134787777655322
Q ss_pred ccHHHHhccCCCcEEEEeCCC
Q 042102 217 VNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 217 i~~~~l~~mk~gavlVN~~rg 237 (317)
.-...++.++++..+++++-.
T Consensus 172 ~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 172 ALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred HHHHHHHHhcCCcEEEEEecc
Confidence 124567889999999998754
No 437
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.46 E-value=0.71 Score=42.94 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=42.9
Q ss_pred CeEEEEecChhHHHHHHHHhh-CCCEEE-EeCCCCCCC-------CCcc-ccCCHHHhcc--cCCEEEEeccCChh
Q 042102 149 KSVGILGMGRIGTAIAKRAEA-FDCIIG-YNSRTEKPN-------LNYK-YYPNLIDLAS--NCQILVVACSLTEE 212 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~-~~~~~~~~~-------~~~~-~~~~l~el~~--~aDvV~~~lp~~~~ 212 (317)
.+|||||.|.||+..+..+.. -++++. +++++++.. .+.. ...+.+++++ +.|+|+.+.|....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 479999999999988666653 356664 566554321 1222 2457888875 57889999986543
No 438
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.46 E-value=1.3 Score=43.85 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=62.9
Q ss_pred CeEEEEec-ChhHHHHHHHHhhC-------CC--EEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEE
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAF-------DC--IIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQIL 203 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~-------G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV 203 (317)
.+|+|||. |.+|..+|-.|... |. ++..+|...+...+ .....+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 48999999 99999999988755 44 67788876554211 11123456889999999
Q ss_pred EEeccCC--h-hhh--------cccc--HHHHhc-cCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102 204 VVACSLT--E-ETQ--------HIVN--RQVINA-LGPKGVLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 204 ~~~lp~~--~-~t~--------~li~--~~~l~~-mk~gavlVN~~rg~~vd~~aL~~al~~ 251 (317)
++..-.. + .++ .++. ...+.. -.+++++|.++ ..+|.-..+-.-.+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 9975431 1 111 1111 122334 46789999886 66666655543333
No 439
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.39 E-value=0.82 Score=42.44 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=55.9
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc---ccC--C-HHHhcccCCEEEEeccCChhhhc
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK---YYP--N-LIDLASNCQILVVACSLTEETQH 215 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~---~~~--~-l~el~~~aDvV~~~lp~~~~t~~ 215 (317)
.|.+|.|+|.|.+|+.+++.++.+|.+|++.+++.... .+.. ... + ........|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 46799999999999999999999999998887654321 0110 000 1 1111235788776654221
Q ss_pred cccHHHHhccCCCcEEEEeCC
Q 042102 216 IVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 216 li~~~~l~~mk~gavlVN~~r 236 (317)
...+.+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 23556788899999998864
No 440
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.39 E-value=0.52 Score=44.83 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=56.4
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC------CCcc---ccC---CHHHhcccCCEEEEeccCChhhh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN------LNYK---YYP---NLIDLASNCQILVVACSLTEETQ 214 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~------~~~~---~~~---~l~el~~~aDvV~~~lp~~~~t~ 214 (317)
.|.++.|.|.|.+|+.+++.++..|.+|++.+++.+.. .+.. ... .+.++....|+++-++.....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57899999999999999999999999887766543211 1111 011 122333456888877653221
Q ss_pred ccccHHHHhccCCCcEEEEeCC
Q 042102 215 HIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 215 ~li~~~~l~~mk~gavlVN~~r 236 (317)
-...++.++++..++.+|.
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---HHHHHHHhccCCEEEEECC
Confidence 1345677889999988874
No 441
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.38 E-value=0.47 Score=41.26 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=46.8
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCC---c-------cccCCHHHhcccCCEEEEeccCC
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLN---Y-------KYYPNLIDLASNCQILVVACSLT 210 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~---~-------~~~~~l~el~~~aDvV~~~lp~~ 210 (317)
++|+|||. |.+|+.+++-++..|..|+.+-|++.+... . ....++.+.+..-|+|+.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 58999996 999999999999999999988777654311 1 11234557889999999876543
No 442
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=91.35 E-value=0.38 Score=43.44 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=30.6
Q ss_pred cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
++.||++.|.|. +.||+++|+.+...|++|....+.
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 367999999997 489999999999999998766543
No 443
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.34 E-value=0.53 Score=51.00 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=52.5
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC--------------------------CCc--------cccC
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN--------------------------LNY--------KYYP 191 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~--------------------------~~~--------~~~~ 191 (317)
=.|++|+|||-|..|-+.|..|...|..|.+|.|+.... .+. ....
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 479999999999999999999999999999998875431 011 1236
Q ss_pred CHHHhcccCCEEEEeccCC
Q 042102 192 NLIDLASNCQILVVACSLT 210 (317)
Q Consensus 192 ~l~el~~~aDvV~~~lp~~ 210 (317)
+++++.++-|.|+++.-.|
T Consensus 1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred cHHHHhhccCeEEEEeCCC
Confidence 8999999999999986544
No 444
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.34 E-value=0.34 Score=46.97 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=33.9
Q ss_pred cccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 143 TTKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
+....+++|.|.|. |.||+.+++.|...|.+|....|+.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 34567889999997 9999999999999999998888764
No 445
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=91.33 E-value=0.53 Score=44.05 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=52.8
Q ss_pred EEecChhHHHHHHHHhhCCC--EEEEeCCCCCCCCC---------------ccccCCHHHhcccCCEEEEeccCC--h-h
Q 042102 153 ILGMGRIGTAIAKRAEAFDC--IIGYNSRTEKPNLN---------------YKYYPNLIDLASNCQILVVACSLT--E-E 212 (317)
Q Consensus 153 IiG~G~iG~~~a~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~el~~~aDvV~~~lp~~--~-~ 212 (317)
|||.|.+|..+|-.|...+. ++..+|.......+ .....+-.+.++.||+|+++.-.. + .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 68999999999999987675 68888876543210 111223457899999999975431 1 1
Q ss_pred hh--------cccc--HHHHhccCCCcEEEEeC
Q 042102 213 TQ--------HIVN--RQVINALGPKGVLINIG 235 (317)
Q Consensus 213 t~--------~li~--~~~l~~mk~gavlVN~~ 235 (317)
++ .++. .+.+....|.+++++++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 11 1111 12333457889999986
No 446
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.27 E-value=0.6 Score=43.49 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=43.5
Q ss_pred cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-------------CCc-------cccCCHHHhcccCCEEEE
Q 042102 147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-------------LNY-------KYYPNLIDLASNCQILVV 205 (317)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-------------~~~-------~~~~~l~el~~~aDvV~~ 205 (317)
.||++.|.|. |.||+.+++.|...|++|.+..++.... ... ....+++++++.+|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 3789999995 9999999999999999987765543210 001 112346677888998877
Q ss_pred ecc
Q 042102 206 ACS 208 (317)
Q Consensus 206 ~lp 208 (317)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
No 447
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.20 E-value=0.84 Score=41.16 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=32.5
Q ss_pred cccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.||++.|.|.+ .||+++|+.+...|++|+..+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999986 799999999999999998877754
No 448
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.15 E-value=0.26 Score=44.44 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=31.4
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|++++|.|+|+|.+|..+++.|...|. ++..+|.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 35788999999999999999999998897 6777764
No 449
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=91.14 E-value=0.39 Score=46.01 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=40.9
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC----Cc---cccCC---HHHhcc--cCCEEEEe
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL----NY---KYYPN---LIDLAS--NCQILVVA 206 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~el~~--~aDvV~~~ 206 (317)
+|+|||.|..|..+++.++.+|++|++++..+.... .. ....+ +.++++ ++|.|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 589999999999999999999999999887654321 00 01233 444555 58887653
No 450
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.14 E-value=0.66 Score=43.44 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=55.2
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CCccc---c--CCH---HHhcc--cCCEEEEeccCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYKY---Y--PNL---IDLAS--NCQILVVACSLT 210 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~~---~--~~l---~el~~--~aDvV~~~lp~~ 210 (317)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++.... .+... . .+. .++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 488999999999999999999999998 88887654321 11110 0 011 12222 467777665422
Q ss_pred hhhhccccHHHHhccCCCcEEEEeCCC
Q 042102 211 EETQHIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~rg 237 (317)
. .....++.+++++.++.++..
T Consensus 243 ~-----~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 243 A-----ARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred H-----HHHHHHHHhhcCCEEEEEcCC
Confidence 1 113456778888888877653
No 451
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.07 E-value=0.44 Score=45.74 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=42.9
Q ss_pred cCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-C----Ccc-------ccCCHHHhcccCCEEEEec
Q 042102 147 TGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-L----NYK-------YYPNLIDLASNCQILVVAC 207 (317)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-~----~~~-------~~~~l~el~~~aDvV~~~l 207 (317)
.+++|.|.|. |-||+.+++.|...|.+|.+.++..... . ... ....+..+++++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5689999998 9999999999999999999888643211 0 001 0112345567899877654
No 452
>PRK05884 short chain dehydrogenase; Provisional
Probab=91.06 E-value=0.51 Score=41.68 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=27.9
Q ss_pred eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
++.|.|. |.||+.+++.+...|++|...+|+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~ 34 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR 34 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5778886 8999999999999999999888764
No 453
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.04 E-value=0.88 Score=43.49 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=48.7
Q ss_pred CeEEEEe-cChhHHHHHHHHhhCC-CEEEEeCCCC-CCC--CC----c-------------cc-cCCHHHhcccCCEEEE
Q 042102 149 KSVGILG-MGRIGTAIAKRAEAFD-CIIGYNSRTE-KPN--LN----Y-------------KY-YPNLIDLASNCQILVV 205 (317)
Q Consensus 149 ~~vgIiG-~G~iG~~~a~~l~~~G-~~V~~~~~~~-~~~--~~----~-------------~~-~~~l~el~~~aDvV~~ 205 (317)
.+|+|+| .|.+|+.+++.|.... +++.++.++. ... .. . .. ..+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 6899998 8999999999998765 4776652221 111 00 0 00 113333 478999999
Q ss_pred eccCChhhhccccHHHHhcc-CCCcEEEEeC
Q 042102 206 ACSLTEETQHIVNRQVINAL-GPKGVLINIG 235 (317)
Q Consensus 206 ~lp~~~~t~~li~~~~l~~m-k~gavlVN~~ 235 (317)
++|.... .+..+.+ +.|..+|+.+
T Consensus 83 a~p~~~s------~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA------GEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHH------HHHHHHHHHCCCEEEECC
Confidence 9996533 2222322 4567677765
No 454
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=91.01 E-value=0.89 Score=44.79 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.1
Q ss_pred eEEEEecChhHHHHHHHHhhCCC------EEEEeCCC
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDC------IIGYNSRT 180 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~------~V~~~~~~ 180 (317)
+|.|||+|.+|.++++.|...|. ++.++|..
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence 58999999999999999998887 78887754
No 455
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.94 E-value=0.66 Score=45.08 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=50.3
Q ss_pred cCCeEEEEec----------ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--CccccCCHHHhcccCCEEEEecc
Q 042102 147 TGKSVGILGM----------GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--NYKYYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 147 ~g~~vgIiG~----------G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~el~~~aDvV~~~lp 208 (317)
.|++|+|+|+ ..-...+++.|...|++|.+||+...... +.....++.++++.||.|++..-
T Consensus 295 ~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 295 KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 6899999999 34577899999999999999998743322 34456889999999999988754
No 456
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.90 E-value=0.61 Score=41.91 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=32.2
Q ss_pred cccCCeEEEEecC---hhHHHHHHHHhhCCCEEEEeCCC
Q 042102 145 KFTGKSVGILGMG---RIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 145 ~l~g~~vgIiG~G---~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
.+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 3789999999986 89999999999999999887765
No 457
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.86 E-value=0.34 Score=43.73 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=32.6
Q ss_pred cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.||++.|.|. +.||.++|+.|...|++|+..+++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 478999999996 7999999999999999998887653
No 458
>PRK08324 short chain dehydrogenase; Validated
Probab=90.84 E-value=0.38 Score=50.18 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.4
Q ss_pred ccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 144 TKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 144 ~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
..+.|+++.|.| .|.||+.+++.|...|++|+..+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 457899999999 599999999999999999999887653
No 459
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.79 E-value=0.39 Score=44.39 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----Ccc-------ccCCHHHhcccCCEEEEecc
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----NYK-------YYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~el~~~aDvV~~~lp 208 (317)
+++.|.|. |.||+.+++.|...|.+|.+.+++..... +.. ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47889985 99999999999999999998887654321 111 11245677888998877654
No 460
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=90.77 E-value=0.77 Score=43.74 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=48.0
Q ss_pred eEEEEe-cChhHHHHHHHHhhCCCE---EEEeCCCCCCC--C---Ccc-cc--CCHHHhcccCCEEEEeccCChhhhccc
Q 042102 150 SVGILG-MGRIGTAIAKRAEAFDCI---IGYNSRTEKPN--L---NYK-YY--PNLIDLASNCQILVVACSLTEETQHIV 217 (317)
Q Consensus 150 ~vgIiG-~G~iG~~~a~~l~~~G~~---V~~~~~~~~~~--~---~~~-~~--~~l~el~~~aDvV~~~lp~~~~t~~li 217 (317)
+|+|+| -|.+|+.+++.|...++. +.++.+..... . +.. .. .+. +.++++|+++.++|.....+ +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s~~-~- 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVSKE-F- 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHHHH-H-
Confidence 589999 899999999999885553 33333322211 1 100 11 122 34588999999998553322 1
Q ss_pred cHHHHhccCCCcEEEEeC
Q 042102 218 NRQVINALGPKGVLINIG 235 (317)
Q Consensus 218 ~~~~l~~mk~gavlVN~~ 235 (317)
-+.. .+.|+++|+.+
T Consensus 78 a~~~---~~~G~~VID~s 92 (339)
T TIGR01296 78 APKA---AKCGAIVIDNT 92 (339)
T ss_pred HHHH---HHCCCEEEECC
Confidence 1222 35678888776
No 461
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.74 E-value=0.4 Score=47.05 Aligned_cols=105 Identities=15% Similarity=0.045 Sum_probs=62.1
Q ss_pred ccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC------Ccccc--CCHHHhcccCCEEEEeccCChhhh---
Q 042102 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL------NYKYY--PNLIDLASNCQILVVACSLTEETQ--- 214 (317)
Q Consensus 146 l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~el~~~aDvV~~~lp~~~~t~--- 214 (317)
+.++++.|+|+|..|.+.++.|+..|.+|.++|....... +.... ....+.++..|+|+.. |.-+...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence 5678999999999999999999999999999996433210 11111 1122345678866554 3222111
Q ss_pred ------c--cccH-HHHhc-cCCCcEEEEeCCCcccCHHHHHHHHHh
Q 042102 215 ------H--IVNR-QVINA-LGPKGVLINIGRGLLVDEHELVSALLQ 251 (317)
Q Consensus 215 ------~--li~~-~~l~~-mk~gavlVN~~rg~~vd~~aL~~al~~ 251 (317)
+ ++.+ +.+.. ++...+-|--+.|..--..-|.+.|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 2232 33333 222233344456877777777777764
No 462
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.71 E-value=0.54 Score=44.91 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc---c--CCHH----Hhcc-cCCEEEEeccCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY---Y--PNLI----DLAS-NCQILVVACSLT 210 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~--~~l~----el~~-~aDvV~~~lp~~ 210 (317)
.|.+|.|.|.|.+|..+++.++..|+ +|++.++++.+. .++.. . .++. ++.. ..|+++-+....
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 47899999999999999999999999 688887654321 11110 1 1111 1111 368887776432
Q ss_pred hhhhccccHHHHhccCCCcEEEEeCC
Q 042102 211 EETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 211 ~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+ + -...++.++++..+|.++-
T Consensus 271 ~-~----~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 P-A----LETAYEITRRGGTTVTAGL 291 (371)
T ss_pred H-H----HHHHHHHHhcCCEEEEEcc
Confidence 2 1 1345677888888888764
No 463
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=90.67 E-value=0.45 Score=43.32 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=41.4
Q ss_pred eEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCCCccccCCHHHhcccC--CEEEEeccC
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNC--QILVVACSL 209 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el~~~a--DvV~~~lp~ 209 (317)
+|.|+|. |.||+.+++.|...|.+|.+.+|... +.....++.++++.+ |+|+.+...
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 4788895 99999999999999999998887521 122233466667665 988776543
No 464
>PLN02427 UDP-apiose/xylose synthase
Probab=90.57 E-value=0.48 Score=45.49 Aligned_cols=65 Identities=9% Similarity=0.049 Sum_probs=45.5
Q ss_pred cccccCCeEEEEec-ChhHHHHHHHHhhC-CCEEEEeCCCCCCC-----C-------Ccc-------ccCCHHHhcccCC
Q 042102 143 TTKFTGKSVGILGM-GRIGTAIAKRAEAF-DCIIGYNSRTEKPN-----L-------NYK-------YYPNLIDLASNCQ 201 (317)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~a~~l~~~-G~~V~~~~~~~~~~-----~-------~~~-------~~~~l~el~~~aD 201 (317)
|+.+..++|.|.|. |-||+.+++.|... |.+|.+.++..... . ... ....+.++++++|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 55677889999995 99999999999887 58998888653210 0 111 1123567788899
Q ss_pred EEEEec
Q 042102 202 ILVVAC 207 (317)
Q Consensus 202 vV~~~l 207 (317)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 776554
No 465
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=90.46 E-value=0.97 Score=44.00 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=47.1
Q ss_pred cccCCeEEEEec-----C---hhHHHHHHHHhhCCCEEEEeCCCCC-C--C-----------CC--ccccCCHHHhcccC
Q 042102 145 KFTGKSVGILGM-----G---RIGTAIAKRAEAFDCIIGYNSRTEK-P--N-----------LN--YKYYPNLIDLASNC 200 (317)
Q Consensus 145 ~l~g~~vgIiG~-----G---~iG~~~a~~l~~~G~~V~~~~~~~~-~--~-----------~~--~~~~~~l~el~~~a 200 (317)
.+.|+||+|+|- | ++.++++..+..+|++|.+..+..- . . .+ +....++++.++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 5668999999999999988876531 1 1 01 22357899999999
Q ss_pred CEEEEe
Q 042102 201 QILVVA 206 (317)
Q Consensus 201 DvV~~~ 206 (317)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999775
No 466
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.43 E-value=1.1 Score=42.54 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=54.1
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CCccc-----cCCH----HHhcc--cCCEEEEeccC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYKY-----YPNL----IDLAS--NCQILVVACSL 209 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~~-----~~~l----~el~~--~aDvV~~~lp~ 209 (317)
.|.+|.|.|.|.+|+.+++.++.+|++ |++.+++.... .+... ..+. .++.. ..|+|+-+...
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 478999999999999999999999995 88887654321 11110 1111 12222 36777766542
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+.+ + ...+..++++..+|.+|-
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 221 1 234667788888888764
No 467
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.38 E-value=0.43 Score=43.07 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=46.2
Q ss_pred ccccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CC---cc-----ccCCHHHhcccCCEEEEecc
Q 042102 144 TKFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LN---YK-----YYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 144 ~~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~---~~-----~~~~l~el~~~aDvV~~~lp 208 (317)
..+.|+++.|.|. |.||+++|+.+...|++|++.+++.... .. .. ...++++.+...|+++.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 4578999999997 6899999999999999998877754111 00 00 11234456778999888763
No 468
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.35 E-value=0.92 Score=42.21 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=54.4
Q ss_pred cCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCcc----cc--CCHHHhc-----ccCCEEEEeccC
Q 042102 147 TGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYK----YY--PNLIDLA-----SNCQILVVACSL 209 (317)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~----~~--~~l~el~-----~~aDvV~~~lp~ 209 (317)
.|.+|.|.| .|.+|+.+++.++.+|++|++..++.+.. .+.. .. .++.+.+ ...|+++-++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence 478999999 59999999999999999988776654321 1111 00 1222222 135777665441
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
+ .+ ...++.+++++.+|.++.
T Consensus 218 -~----~~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 218 -E----FS-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -H----HH-HHHHHHhCcCcEEEEecc
Confidence 1 12 456778888888888875
No 469
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.32 E-value=0.38 Score=44.32 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=31.7
Q ss_pred ccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 144 TKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 46899999999999999999999999995 6777764
No 470
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=90.31 E-value=0.34 Score=47.30 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=26.3
Q ss_pred CeEEEEecChhHHHHHHHHhh-CCCEEEE-eCC
Q 042102 149 KSVGILGMGRIGTAIAKRAEA-FDCIIGY-NSR 179 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~-~G~~V~~-~~~ 179 (317)
.+|||.|||+||+.+.+.+.. ++++|.+ .|+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence 499999999999999999874 7899876 443
No 471
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.28 E-value=0.57 Score=42.26 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=33.3
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478899999997 8999999999999999999988865
No 472
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=90.23 E-value=2.2 Score=39.68 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=69.6
Q ss_pred CCeEEEEec-ChhHHHHHHHHhhCCCEE-EEeCCC--CCCCCCccccCCHHHhccc--CCEEEEeccCChhhhccccHHH
Q 042102 148 GKSVGILGM-GRIGTAIAKRAEAFDCII-GYNSRT--EKPNLNYKYYPNLIDLASN--CQILVVACSLTEETQHIVNRQV 221 (317)
Q Consensus 148 g~~vgIiG~-G~iG~~~a~~l~~~G~~V-~~~~~~--~~~~~~~~~~~~l~el~~~--aDvV~~~lp~~~~t~~li~~~~ 221 (317)
+.+|.|.|. |.+|+.+-+.+.+.|.++ ...++. .....+...+.+++|+-.. .|+.++++|... +...+. +.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~-v~~~l~-e~ 83 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPF-AADAIF-EA 83 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHH-HHHHHH-HH
Confidence 346777774 899999999999989873 445655 3333456678899998887 799999999442 233332 22
Q ss_pred HhccCCCcEEEEeCCCcccCHHHHHHHHHhCCceEE
Q 042102 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGA 257 (317)
Q Consensus 222 l~~mk~gavlVN~~rg~~vd~~aL~~al~~g~i~ga 257 (317)
.+.=-+.++++.-+-++. +++.|.+..++..++-.
T Consensus 84 ~~~Gvk~avIis~Gf~e~-~~~~l~~~a~~~giril 118 (286)
T TIGR01019 84 IDAGIELIVCITEGIPVH-DMLKVKRYMEESGTRLI 118 (286)
T ss_pred HHCCCCEEEEECCCCCHH-HHHHHHHHHHHcCCEEE
Confidence 221112444444444443 67789998888877733
No 473
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.20 E-value=0.74 Score=43.31 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=41.3
Q ss_pred CeEEEEecChhHHHHHHHHhhCC--CEEEEeCCCCCCCCCc---------------cccC-CHHHhcccCCEEEEec
Q 042102 149 KSVGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNLNY---------------KYYP-NLIDLASNCQILVVAC 207 (317)
Q Consensus 149 ~~vgIiG~G~iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~---------------~~~~-~l~el~~~aDvV~~~l 207 (317)
++|+|||.|.+|+++|-.|...+ -++..+|...+...+. .... .-.+.++.||+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 48999999999999999995444 4788888764332110 0011 1156789999999986
No 474
>PRK06398 aldose dehydrogenase; Validated
Probab=90.20 E-value=1.2 Score=40.12 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=33.4
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEK 182 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~ 182 (317)
+++|+++.|.|. |.||+.+|+.|...|++|+..+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 478999999996 58999999999999999998887653
No 475
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.08 E-value=0.54 Score=43.72 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=56.2
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCCC-----Ccc---cc--CCHH--H--hcccCCEEEEeccCCh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPNL-----NYK---YY--PNLI--D--LASNCQILVVACSLTE 211 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~~-----~~~---~~--~~l~--e--l~~~aDvV~~~lp~~~ 211 (317)
.|.+|.|+|.|.+|+.+++.+++.|++ |.+.+++.+... +.. .. .+.. . .-...|+++-+.+...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 567999999999999999999999997 777766543210 110 00 1111 1 1245788877654221
Q ss_pred hhhccccHHHHhccCCCcEEEEeCCCc
Q 042102 212 ETQHIVNRQVINALGPKGVLINIGRGL 238 (317)
Q Consensus 212 ~t~~li~~~~l~~mk~gavlVN~~rg~ 238 (317)
.....++.|++++.+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 2345567788888888887654
No 476
>PRK08628 short chain dehydrogenase; Provisional
Probab=90.05 E-value=0.54 Score=42.06 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=32.5
Q ss_pred cccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.|+++.|.| .|.||+.+|+.|...|++|.+.+++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~ 41 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA 41 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh
Confidence 57899999999 47899999999999999998887754
No 477
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=89.92 E-value=0.7 Score=43.78 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=56.9
Q ss_pred eEEEEec-ChhHHHHHHHHhhCCC-------EEEEeCCCCCC--CCC-------cc--------ccCCHHHhcccCCEEE
Q 042102 150 SVGILGM-GRIGTAIAKRAEAFDC-------IIGYNSRTEKP--NLN-------YK--------YYPNLIDLASNCQILV 204 (317)
Q Consensus 150 ~vgIiG~-G~iG~~~a~~l~~~G~-------~V~~~~~~~~~--~~~-------~~--------~~~~l~el~~~aDvV~ 204 (317)
+|+|+|. |.+|..+|..|...|. .+..+|..+.. ..+ .. ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999886554 48888874432 110 00 0124568899999998
Q ss_pred EeccCCh---hhhc-cc--c----H---HHHhcc-CCCcEEEEeCCCcccCHHH
Q 042102 205 VACSLTE---ETQH-IV--N----R---QVINAL-GPKGVLINIGRGLLVDEHE 244 (317)
Q Consensus 205 ~~lp~~~---~t~~-li--~----~---~~l~~m-k~gavlVN~~rg~~vd~~a 244 (317)
++.-... +|+. ++ | + ..+... +|.+++|.++ .++|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 7644321 1111 11 1 1 223334 4788888886 5565544
No 478
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=89.90 E-value=1.4 Score=41.12 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=53.0
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCC-----CCccc-----cCCHHH-h--cccCCEEEEeccCChhh
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN-----LNYKY-----YPNLID-L--ASNCQILVVACSLTEET 213 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~e-l--~~~aDvV~~~lp~~~~t 213 (317)
.|.+|.|.|.|.+|+.+++.++++|++|++.+++.... .+... ..++.+ + +...|+++-+.....
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~-- 240 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK-- 240 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence 47799999999999999999999999998887654321 11100 011211 1 134677765432111
Q ss_pred hccccHHHHhccCCCcEEEEeCC
Q 042102 214 QHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 214 ~~li~~~~l~~mk~gavlVN~~r 236 (317)
.-...++.++++..+|+++.
T Consensus 241 ---~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 241 ---AISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ---HHHHHHHHcccCCEEEEEec
Confidence 12345667777888887764
No 479
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.82 E-value=0.54 Score=44.51 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=33.5
Q ss_pred cccccCCeEEEEe-cChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 143 TTKFTGKSVGILG-MGRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 143 ~~~l~g~~vgIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
+++-++++|.|.| .|-||+.+++.|...|.+|.+.++..
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 4567889999999 59999999999999999998776643
No 480
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=89.78 E-value=0.42 Score=46.74 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=46.1
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCCC--------Ccc-------ccCCHHHhcccCCEEEEecc
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPNL--------NYK-------YYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~~--------~~~-------~~~~l~el~~~aDvV~~~lp 208 (317)
.++||++.|.|. |.||+++++.+...|++|...+++..... ... ...++.+.+.+.|+++.+..
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG 254 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG 254 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence 568999999998 89999999999999999988876543210 000 11234556788999887643
No 481
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.61 E-value=0.56 Score=41.55 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=32.9
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
+.|+++.|.|. |.||+.+++.+...|++|+..+++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999998 9999999999999999998888764
No 482
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.37 E-value=0.49 Score=46.29 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=64.3
Q ss_pred eEEEEecChhHHHHHHHHhhCCCEEEEeCCCCCCCC-----------Ccccc--CCHHHhcccCCEEEEec--c-CChhh
Q 042102 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNL-----------NYKYY--PNLIDLASNCQILVVAC--S-LTEET 213 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~-----------~~~~~--~~l~el~~~aDvV~~~l--p-~~~~t 213 (317)
++.|||+|.+|.++|+.|+..|++|.++|....... +.... .+ .+.+..+|+|+..- | .+|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999999999996543211 11111 22 34567899887753 3 22321
Q ss_pred h-------ccccHH-HH-hccCCCcEEEEeCCCcccCHHHHHHHHHhCC
Q 042102 214 Q-------HIVNRQ-VI-NALGPKGVLINIGRGLLVDEHELVSALLQGR 253 (317)
Q Consensus 214 ~-------~li~~~-~l-~~mk~gavlVN~~rg~~vd~~aL~~al~~g~ 253 (317)
. .++.+- .+ ..++...+-|--+.|..--..-+.+.|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 133333 22 2333334445556788887777777787644
No 483
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.34 E-value=1.4 Score=41.90 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=47.4
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCC---EEEEe-CCCCCC-C---CC--ccc-cCCHHHhcccCCEEEEeccCChhhhcc
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDC---IIGYN-SRTEKP-N---LN--YKY-YPNLIDLASNCQILVVACSLTEETQHI 216 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~---~V~~~-~~~~~~-~---~~--~~~-~~~l~el~~~aDvV~~~lp~~~~t~~l 216 (317)
.+|+|+|. |.+|+++.+.|...+. ++.+. ++.... . .+ ... ..+..+ ++++|++++++|.. ...
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~-- 80 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSR-- 80 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHH--
Confidence 58999996 9999999999984333 33333 222111 0 11 111 112233 48899999999943 222
Q ss_pred ccHHHHhcc-CCCcEEEEeC
Q 042102 217 VNRQVINAL-GPKGVLINIG 235 (317)
Q Consensus 217 i~~~~l~~m-k~gavlVN~~ 235 (317)
+....+ +.|..+||.|
T Consensus 81 ---~~v~~~~~~G~~VIDlS 97 (336)
T PRK05671 81 ---SFAEKARAAGCSVIDLS 97 (336)
T ss_pred ---HHHHHHHHCCCeEEECc
Confidence 233322 4688889887
No 484
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.34 E-value=0.56 Score=41.51 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=32.4
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.++++.|.|. |.||+.+++.+...|++|+..+++.
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 367899999996 8999999999999999998887654
No 485
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=89.33 E-value=0.94 Score=41.09 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=40.6
Q ss_pred EEEe-cChhHHHHHHHHhhCCCEEEEeCCCCCCCCCcc-------ccCCHHHhcccCCEEEEecc
Q 042102 152 GILG-MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK-------YYPNLIDLASNCQILVVACS 208 (317)
Q Consensus 152 gIiG-~G~iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~-------~~~~l~el~~~aDvV~~~lp 208 (317)
.|.| .|.||+.+++.|...|++|.+.+|+........ ......+.+.++|+|+.+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 4565 599999999999999999999988765431110 01234566788998877664
No 486
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=89.29 E-value=1.2 Score=40.79 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=55.4
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCCCCC-----CCcc-----ccCC----HHHhc--ccCCEEEEeccC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTEKPN-----LNYK-----YYPN----LIDLA--SNCQILVVACSL 209 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~~~~-----~~~~-----~~~~----l~el~--~~aDvV~~~lp~ 209 (317)
.|.+|.|.|.|.+|+.+++.+++.|++ |++..+..... .+.. ...+ +.++. ...|+++-+...
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 208 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 578999999999999999999999998 88776653221 0110 0112 22222 236777766432
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCCC
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGRG 237 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~rg 237 (317)
.. .....++.|++++.+++++..
T Consensus 209 ~~-----~~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 209 QW-----PLDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred HH-----HHHHHHHHhccCCEEEEEccC
Confidence 11 224567778888888888643
No 487
>PRK05865 hypothetical protein; Provisional
Probab=89.28 E-value=1.6 Score=46.65 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=56.6
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCCCCC--CCcc-------ccCCHHHhcccCCEEEEeccCChhh--hcc
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTEKPN--LNYK-------YYPNLIDLASNCQILVVACSLTEET--QHI 216 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~~~~--~~~~-------~~~~l~el~~~aDvV~~~lp~~~~t--~~l 216 (317)
++|.|.|. |.||+.+++.|...|.+|.+.+++.... .... ...++.++++.+|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 47899995 9999999999999999999888753221 1111 1224566788999888776432210 011
Q ss_pred c-cHHHHhccCCC--cEEEEeCCCc
Q 042102 217 V-NRQVINALGPK--GVLINIGRGL 238 (317)
Q Consensus 217 i-~~~~l~~mk~g--avlVN~~rg~ 238 (317)
. ....++.|+.. ..+|.+|...
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12344555432 3688888764
No 488
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.22 E-value=0.62 Score=41.67 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=33.3
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.||++.|.|. |.||+.+++.|...|++|...+|+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999996 9999999999999999999888764
No 489
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=89.21 E-value=0.66 Score=43.55 Aligned_cols=62 Identities=26% Similarity=0.169 Sum_probs=43.2
Q ss_pred ccCCeEEEEec-ChhHHHHHHHHhhCC--CEEEEeCCCCCCC---------CCcc-------ccCCHHHhcccCCEEEEe
Q 042102 146 FTGKSVGILGM-GRIGTAIAKRAEAFD--CIIGYNSRTEKPN---------LNYK-------YYPNLIDLASNCQILVVA 206 (317)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~a~~l~~~G--~~V~~~~~~~~~~---------~~~~-------~~~~l~el~~~aDvV~~~ 206 (317)
+.|+++.|.|. |.||+.+++.|.+.| .+|.++++..... .... ...++.+++++.|+|+.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 56889999996 899999999998876 6888887654221 0111 112356677889988765
Q ss_pred c
Q 042102 207 C 207 (317)
Q Consensus 207 l 207 (317)
.
T Consensus 82 A 82 (324)
T TIGR03589 82 A 82 (324)
T ss_pred c
Confidence 4
No 490
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=89.21 E-value=0.47 Score=39.91 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=24.1
Q ss_pred eEEEEecChhHHHHHHHHh-hCCCEEEEeC
Q 042102 150 SVGILGMGRIGTAIAKRAE-AFDCIIGYNS 178 (317)
Q Consensus 150 ~vgIiG~G~iG~~~a~~l~-~~G~~V~~~~ 178 (317)
+|||-|||+||+.+++.+. .-.++|.+.+
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaIn 31 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAIN 31 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence 7999999999999999987 4456776554
No 491
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=89.19 E-value=1.3 Score=42.26 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=46.9
Q ss_pred CeEEEEec-ChhHHHHHHHHhhCC-CEEEEe-CCCCCCC--CC----c-----c-c-cC-----C-HHHhcccCCEEEEe
Q 042102 149 KSVGILGM-GRIGTAIAKRAEAFD-CIIGYN-SRTEKPN--LN----Y-----K-Y-YP-----N-LIDLASNCQILVVA 206 (317)
Q Consensus 149 ~~vgIiG~-G~iG~~~a~~l~~~G-~~V~~~-~~~~~~~--~~----~-----~-~-~~-----~-l~el~~~aDvV~~~ 206 (317)
++|+|+|. |.+|+.+++.+.... +++.+. +...... .. . . . .. + -.+.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999997755 676544 3321110 00 0 0 0 01 1 12345889999999
Q ss_pred ccCChhhhccccHHHHhccCCCcEEEEeC
Q 042102 207 CSLTEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 207 lp~~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
+|..-.-. +. ... .+.|..+|+.+
T Consensus 81 ~p~~~s~~-~~-~~~---~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEVAEE-VE-PKL---AEAGKPVFSNA 104 (341)
T ss_pred CCHHHHHH-HH-HHH---HHCCCEEEECC
Confidence 99653322 11 111 24566666654
No 492
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.19 E-value=0.74 Score=43.08 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCeEEEEec-ChhHHHHHHHHhhCCC-EEEEeCCCCCCC------CCcc-----ccCCHHHhc-----ccCCEEEEeccC
Q 042102 148 GKSVGILGM-GRIGTAIAKRAEAFDC-IIGYNSRTEKPN------LNYK-----YYPNLIDLA-----SNCQILVVACSL 209 (317)
Q Consensus 148 g~~vgIiG~-G~iG~~~a~~l~~~G~-~V~~~~~~~~~~------~~~~-----~~~~l~el~-----~~aDvV~~~lp~ 209 (317)
|.+|.|.|. |.+|+.+++.++.+|+ +|++..++.... .+.. ...++.+.+ ...|+++-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 798876654321 1111 011222221 246777766542
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeC
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIG 235 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~ 235 (317)
. . + ...++.+++++.+|.+|
T Consensus 235 ~-~----~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 E-I----S-DTVISQMNENSHIILCG 254 (345)
T ss_pred H-H----H-HHHHHHhccCCEEEEEe
Confidence 1 1 2 45677788888888876
No 493
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=89.17 E-value=1.1 Score=46.14 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHHHHhhchhHHHHHHHcCCCccCcccccccccCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCC
Q 042102 103 VLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179 (317)
Q Consensus 103 ~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~ 179 (317)
......||.++-|=|-++ .|.--..--...|.+.+|.|||+|.+|..+|+.|.+.|. +++.+|.
T Consensus 306 mdP~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 306 FDPKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred cCHHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 345667777765554443 354211101256899999999999999999999999998 5766653
No 494
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.14 E-value=0.54 Score=47.84 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=32.6
Q ss_pred cccCCeEEEEecChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
.-.|++|.|||.|.+|-..|..|+..|++|+++++.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 357999999999999999999999999999999854
No 495
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.11 E-value=2.2 Score=40.05 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=30.5
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCCE-EEEeCCCC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDCI-IGYNSRTE 181 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~~-V~~~~~~~ 181 (317)
.|++|.|.|.|.+|..+++.++.+|.+ |++.+++.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 478999999999999999999999997 67776654
No 496
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.03 E-value=1.2 Score=41.91 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=56.9
Q ss_pred cCCeEEEEecChhHHHHHHHHhhCCC-EEEEeCCCCCCC-----CCccc-----cCC----HHHhcc--cCCEEEEeccC
Q 042102 147 TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPN-----LNYKY-----YPN----LIDLAS--NCQILVVACSL 209 (317)
Q Consensus 147 ~g~~vgIiG~G~iG~~~a~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~----l~el~~--~aDvV~~~lp~ 209 (317)
.|.+|.|.|.|.+|+.+++.++.+|+ +|.+.+++.... .+... ..+ +.++.. ..|+++-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 57899999999999999999999999 788877654321 11110 111 222332 37888877653
Q ss_pred ChhhhccccHHHHhccCCCcEEEEeCC
Q 042102 210 TEETQHIVNRQVINALGPKGVLINIGR 236 (317)
Q Consensus 210 ~~~t~~li~~~~l~~mk~gavlVN~~r 236 (317)
... -...++.++++..++.++.
T Consensus 252 ~~~-----~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 QAT-----LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HHH-----HHHHHHhccCCCEEEEEcc
Confidence 221 2456778899999998875
No 497
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.02 E-value=1.7 Score=39.17 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred cccCCeEEEEec---ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 145 KFTGKSVGILGM---GRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
.+.||++.|.|. +.||+++|+.|...|++|+..+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 478999999998 489999999999999999887664
No 498
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=89.00 E-value=0.35 Score=44.24 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=64.3
Q ss_pred cccccCCeEEEEecCh-hHHHHHHHHhhCCCEEEEe-CCCCCCCCCccccCCHHHhcccCCEEEEeccCChhhhccccHH
Q 042102 143 TTKFTGKSVGILGMGR-IGTAIAKRAEAFDCIIGYN-SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQ 220 (317)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~a~~l~~~G~~V~~~-~~~~~~~~~~~~~~~l~el~~~aDvV~~~lp~~~~t~~li~~~ 220 (317)
+-++.||++.|+|-.. +|..+|..|..-|.++.-. |.+-.....+.....++.....+|+++..+- ..++|..+
T Consensus 161 gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g----~p~li~~d 236 (309)
T KOG0089|consen 161 GIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVG----IPNLITSD 236 (309)
T ss_pred CCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcC----CCcccccc
Confidence 5568999999999875 5899999999887655422 1111101111122346677889999998865 34667665
Q ss_pred HHhccCCCcEEEEeCCCcccCH
Q 042102 221 VINALGPKGVLINIGRGLLVDE 242 (317)
Q Consensus 221 ~l~~mk~gavlVN~~rg~~vd~ 242 (317)
. .|+|+.++|++--.+-|.
T Consensus 237 ~---Ik~Ga~vidvgin~v~dp 255 (309)
T KOG0089|consen 237 M---IKPGAAVIDVGINRVHDP 255 (309)
T ss_pred e---eecCceeEecCCCccccc
Confidence 5 589999999998777665
No 499
>PRK06196 oxidoreductase; Provisional
Probab=88.94 E-value=0.76 Score=42.81 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=33.1
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRTE 181 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~~ 181 (317)
.+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468899999998 7899999999999999999888764
No 500
>PRK06128 oxidoreductase; Provisional
Probab=88.94 E-value=0.49 Score=43.79 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=31.2
Q ss_pred cccCCeEEEEec-ChhHHHHHHHHhhCCCEEEEeCCC
Q 042102 145 KFTGKSVGILGM-GRIGTAIAKRAEAFDCIIGYNSRT 180 (317)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~a~~l~~~G~~V~~~~~~ 180 (317)
.+.||++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999999996 899999999999999998766543
Done!