RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042102
(317 letters)
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 460 bits (1187), Expect = e-165
Identities = 222/308 (72%), Positives = 264/308 (85%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
VLM+CP+S YLEQE++K FK+F+ W + F+ +SI+AVVG++ AGADAELI++L
Sbjct: 26 VLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDAL 85
Query: 70 PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
PKLEIV++ SVGLDK+DL +C+EKG+RV NTPDVLTDDVADLAIGLILAVLRRICE D+Y
Sbjct: 86 PKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY 145
Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKY 189
VR G WK G+FK+TTKF+GK VGI+G+GRIG A+A+RAEAFDC I Y SR++KPN NY Y
Sbjct: 146 VRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTY 205
Query: 190 YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSAL 249
Y ++++LASN ILVVAC LT ET HI+NR+VI+ALGPKGVLINIGRG VDE ELVSAL
Sbjct: 206 YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSAL 265
Query: 250 LQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGK 309
++GRLGGAGLDVFE EP+VPE+L GLENVVLLPHV S TVETRK MADLVVGNL+AHF
Sbjct: 266 VEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSG 325
Query: 310 KPLLTPVV 317
KPLLTPVV
Sbjct: 326 KPLLTPVV 333
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 446 bits (1150), Expect = e-159
Identities = 127/308 (41%), Positives = 186/308 (60%), Gaps = 2/308 (0%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
+L+V P+ ++ E+++++ V +L+ D+ SI+AV AG E +E L
Sbjct: 33 LLLVEPMMPFVMDELQRNYSVHRLYQAADRPALE-AALPSIRAVATGGGAGLSNEWMEKL 91
Query: 70 PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
P L I+A VG DK+DLAR + + I V TP VL DDVADL I L+LAVLRR+ + DR
Sbjct: 92 PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL 151
Query: 130 VRSGEWKK-GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYK 188
VR G W + + GK +G+LG+G+IG A+A RAEAF + Y +R+ +++
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWI 211
Query: 189 YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSA 248
+ + +DLA + +L V + + TQ+IV+ ++ ALGP+G+++N+ RG +VDE L+ A
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 249 LLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFG 308
L G + GAGLDVF +EP + E N VL+PH SATVETR AM LV+ NL AHF
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFA 331
Query: 309 KKPLLTPV 316
+ V
Sbjct: 332 GEKAPNTV 339
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 367 bits (945), Expect = e-128
Identities = 103/316 (32%), Positives = 157/316 (49%), Gaps = 11/316 (3%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFE---DKEQFINTHKDSIQAVVGSAAAGADAELI 66
+ + +E E+ + F + ++ + + + + +A AE+I
Sbjct: 31 AFLCRRFTPAIEAELRQRFDL-EVNLEDTVLTPSGIASRAHG-AEVLFVTATEAITAEVI 88
Query: 67 ESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
L P L+ +AT SVG D ID+A + GI+V +TPDVL+D A++A+ L+L RR E
Sbjct: 89 RKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYE 148
Query: 126 SDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
+DR VRSG W + TG+ +GI GMGRIG AIA RA F I Y++RT
Sbjct: 149 ADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLS 208
Query: 184 N---LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
+ Y+ L L I ++A E + ++ I + V+INI RG L+
Sbjct: 209 HALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLI 268
Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVV 300
++ L+ AL L AGLDVF +EP + L+N+ L PH+ SAT ETR AM L++
Sbjct: 269 NDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLI 328
Query: 301 GNLQAHFGKKPLLTPV 316
++A +
Sbjct: 329 QGIEALNQSDVPDNLI 344
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 343 bits (883), Expect = e-118
Identities = 86/334 (25%), Positives = 144/334 (43%), Gaps = 26/334 (7%)
Query: 9 IVLMVCPVSNYLEQEIEKSFKVF--KLWHFEDKEQFI----NTHKDSIQAVVGSAAAGA- 61
VL++ + +L+ + F + + F +A++ A
Sbjct: 5 RVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGT 64
Query: 62 -----DAELIESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGL 115
+A+LI LP L++ A G D +DL E+G+ AN+ +DLA+ L
Sbjct: 65 ESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYL 124
Query: 116 ILAVLRRICESDRYVRSGEWKKGEF------KMTTKFTGKSVGILGMGRIGTAIAKRA-E 168
IL+V R S+R R+G+ + K G +G +G+G I IA++A
Sbjct: 125 ILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVH 184
Query: 169 AFDCIIGYNSRTEKP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
+ Y L + +L +LA + V+ + T H+++
Sbjct: 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFA 244
Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPH 283
A+ P ++N RG ++ + L++AL G+L AGLDV E EP V +ELI +++V L H
Sbjct: 245 AMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTH 304
Query: 284 VASATVETRKAMADLVVGNLQAHF-GKKPLLTPV 316
+ +ET L + N+ KPLLTP
Sbjct: 305 IGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 327 bits (840), Expect = e-112
Identities = 132/319 (41%), Positives = 183/319 (57%), Gaps = 14/319 (4%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFE---DKEQFINTHKDSIQAVVGSAAAGADAELI 66
V + + + +E F+V ++W E +E + K+ + A+V + D E+
Sbjct: 5 VFITREIPEVGIKMLEDEFEV-EVWGDEKEIPREILLKKVKE-VDALVTMLSERIDKEVF 62
Query: 67 ESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICES 126
E+ PKL IVA +VG D ID+ ++GI V NTPDVLTD ADLA L+LA R + +
Sbjct: 63 ENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKG 122
Query: 127 DRYVRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRT 180
DR+VRSGEWKK K+ GK++GI+G+GRIG AIAKRA+ F+ I Y SRT
Sbjct: 123 DRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRT 182
Query: 181 EKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
K + + + L DL +V+A LT ET H++N + + + +LINI RG
Sbjct: 183 RKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARG 242
Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
+VD + LV AL +G + GAGLDVFE EP EEL L+NVVL PH+ SA+ R+ MA+
Sbjct: 243 KVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAE 302
Query: 298 LVVGNLQAHFGKKPLLTPV 316
LV NL A + T V
Sbjct: 303 LVAKNLIAFKRGEIPPTLV 321
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 326 bits (838), Expect = e-112
Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 13/318 (4%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLW---HFEDKEQFINTHKDSIQAVVGSAAAGADAELI 66
+L+ P+ +S+ V ++ I T K + A++ + E+I
Sbjct: 4 ILITWPLPEAAMARARESYDV-IAHGDDPKITIDEMIETAKS-VDALLITLNEKCRKEVI 61
Query: 67 ESLPK-LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICE 125
+ +P+ ++ ++T S+G D IDL CK +GI+V N P +T A++A+ L+L RR E
Sbjct: 62 DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGE 121
Query: 126 SDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
++ +R+ W + K K++GI G G IG A+AKRA+ FD I Y
Sbjct: 122 GEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS 181
Query: 184 N-----LNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGL 238
+ ++ +L L S Q + T ET++ N+ I +L +++N RG
Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241
Query: 239 LVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMADL 298
LVD +V+AL GRL AG DVF EP++ E L N L PH+ SA + R+ MA
Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQ 301
Query: 299 VVGNLQAHFGKKPLLTPV 316
+ A FG + +
Sbjct: 302 ANDLIDALFGGADMSYAL 319
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 324 bits (833), Expect = e-111
Identities = 110/283 (38%), Positives = 160/283 (56%), Gaps = 7/283 (2%)
Query: 38 DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
K + + + ++ + DAE+++ L+++A SVG+D +DL +E+GIRV
Sbjct: 33 PKAELLKRVEG-AVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRV 91
Query: 98 ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKK--GEFKMTTKFTGKSVGILG 155
+TP VLT+ ADL + L+LAV RR+ E Y R G WK E + G ++G++G
Sbjct: 92 THTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVG 151
Query: 156 MGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQH 215
MGRIG A+AKRA AF + Y++RT KP L Y + L +L ++ + LT ET
Sbjct: 152 MGRIGQAVAKRALAFGMRVVYHARTPKP-LPYPFLS-LEELLKEADVVSLHTPLTPETHR 209
Query: 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVP-EELIG 274
++NR+ + A+ +L+N RG LVD LV A L+G L GAGLDV + EP P L
Sbjct: 210 LLNRERLFAMKRGAILLNTARGALVDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYA 268
Query: 275 LENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317
L N V+ PH+ SA TR+ MA++ V NL A + PVV
Sbjct: 269 LPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPVV 311
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 321 bits (826), Expect = e-110
Identities = 95/263 (36%), Positives = 147/263 (55%), Gaps = 8/263 (3%)
Query: 62 DAELIESL-PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVL 120
D ++++ L++++T SVG+D + L K++GIRV TPDVLTD A+LA+ L+L
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 121 RRICESDRYVRSGEWKK--GEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFD-CIIGYN 177
RR+ E+ V++G W + T +VGI+G+GRIG AIA+R + F Y
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 178 SRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINI 234
R +P ++ + + +LA+ +VVACSLT T+ + N+ + V INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 235 GRGLLVDEHELVSALLQGRLGGAGLDVFEHEP-DVPEELIGLENVVLLPHVASATVETRK 293
RG +V++ +L AL G++ AGLDV EP L+ L+N V+LPH+ SAT TR
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 294 AMADLVVGNLQAHFGKKPLLTPV 316
M+ L NL A +P+ + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSEL 328
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 309 bits (793), Expect = e-105
Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 8/284 (2%)
Query: 37 EDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR 96
E ++ F + V + + AE + +P+L+ + + GLD + +
Sbjct: 16 ELRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74
Query: 97 VANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGM 156
VA D VA+ A+ L+LA +RI + ++ G++ + G+ V +LG+
Sbjct: 75 VAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGL 132
Query: 157 GRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHI 216
G IGT + K A + SRT K +++ +L + + V A L + T+ +
Sbjct: 133 GEIGTRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGL 191
Query: 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--ELIG 274
V Q + + V +N+GR ++D ++ L + DV+ D + E
Sbjct: 192 VKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFS 251
Query: 275 LENVVLLPHVASATVETR--KAMADLVVGNLQAHFGKKPLLTPV 316
L NVV P VA R + M V NL +
Sbjct: 252 LPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIA 295
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 301 bits (774), Expect = e-102
Identities = 76/292 (26%), Positives = 142/292 (48%), Gaps = 14/292 (4%)
Query: 38 DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
+E+ + +D QA++ DA+ +++ P+L ++ G D D+ C +G+ +
Sbjct: 35 TREEILRRCRD-AQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWL 93
Query: 98 ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMT-TKFTGKSVGILGM 156
PD+LT A+LAIGL + + R + +D +VRSG+++ + + T +VG LGM
Sbjct: 94 TFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGM 153
Query: 157 GRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKY---YPNLIDLASNCQILVVACSLTEE 212
G IG A+A R + + + + ++ + +L ++ +++A L +
Sbjct: 154 GAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNAD 213
Query: 213 TQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHE------- 265
T H+VN +++ + P +L+N RG +VDE +++AL +G+LGG DVFE E
Sbjct: 214 TLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADR 273
Query: 266 -PDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
+ L+ N + PH+ SA R + N+ + + V
Sbjct: 274 PQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 272 bits (699), Expect = 8e-91
Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 16/318 (5%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
V ++ + +E++K V ++ + E+ ++ S E++E+
Sbjct: 5 VGVLLKMKREALEELKKYADV-EIILYPSGEELKGVIGR-FDGIIVSPTTKITREVLENA 62
Query: 70 PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
+L++++ S G D IDL ++GI V +L++ VA+ +GLI+ ++R+I +D++
Sbjct: 63 ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF 122
Query: 130 VRSGEWKKGEFKMTTKF-----TGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP- 183
+R GEW+ T GK VGILGMG IG AIA+R F + Y SR K
Sbjct: 123 IRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVN 182
Query: 184 ---NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGV-LINIGRGLL 239
L +Y + +L I+++A LT +T HI+N + + L +G L+NIGRG L
Sbjct: 183 VEKELKARYMD-IDELLEKSDIVILALPLTRDTYHIINEERVKKL--EGKYLVNIGRGAL 239
Query: 240 VDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLE-NVVLLPHVASATVETRKAMADL 298
VDE + A+ QG+L G DVFE EP EL E VL PH A +E ++ +
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 299 VVGNLQAHFGKKPLLTPV 316
V NL + V
Sbjct: 300 AVENLLKVLRGEVPEDLV 317
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 268 bits (686), Expect = 4e-88
Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 8/288 (2%)
Query: 38 DKEQFINTHKDSIQAVVGSAAAGA-DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIR 96
F D+ + E I L++ T +G D +DL ++ +
Sbjct: 79 PDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVT 138
Query: 97 VANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMT-TKFTGKSVGILG 155
VA + VA+ + +IL+++R S + R G W + VG +
Sbjct: 139 VAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVA 198
Query: 156 MGRIGTAIAKRAEAFDCIIGYNSRTEKP-----NLNYKYYPNLIDLASNCQILVVACSLT 210
GRIG A+ +R FD + Y R P LN ++ D+ C ++ + C L
Sbjct: 199 AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLH 258
Query: 211 EETQHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE 270
ET+H++N + + ++N RG L D + AL GRL G DV+ +P +
Sbjct: 259 PETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKD 318
Query: 271 -ELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPVV 317
+ + PH++ T+ + A L+ F +P+ +
Sbjct: 319 HPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYL 366
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 260 bits (667), Expect = 5e-86
Identities = 77/314 (24%), Positives = 136/314 (43%), Gaps = 11/314 (3%)
Query: 9 IVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIES 68
+VLM Q+++ ++ W F+D D I+ + G+ L
Sbjct: 3 LVLMAQATKPEQLQQLQTTYPD---WTFKDAAAVTAADYDQIEVMYGNHPL-LKTILARP 58
Query: 69 LPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDR 128
+L+ V S G+D + L + G+ VANT + D +++ + +L+V+R +
Sbjct: 59 TNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWL 118
Query: 129 YVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN-SRTEKPNLN 186
R +T TG+ + I G G+IG ++A +A A +IG N + + +
Sbjct: 119 NQRGARQWALPMTTST-LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH 177
Query: 187 YKY-YPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
+ D + +V A LT T H+ + ++ + +LINIGRG VD L
Sbjct: 178 ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTAL 237
Query: 246 VSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADLVVGNL 303
++AL +L A LDV E EP +P + L ++V++ PH++ R + + N
Sbjct: 238 MTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296
Query: 304 QAHFGKKPLLTPVV 317
L+ V
Sbjct: 297 AQFVKDGTLVRNQV 310
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 242 bits (620), Expect = 1e-78
Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 12/319 (3%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
V ++ +E I K + ++ + + E +E
Sbjct: 24 VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF 83
Query: 70 PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
L I+ G D ID+ + GI V N P ++ AD + IL + RR +
Sbjct: 84 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143
Query: 130 VRSGEWKKGEFKMTTKF------TGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN---SR 179
+R G + ++ G+++GI+G+GR+G A+A RA+AF ++ Y+ S
Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD 203
Query: 180 TEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLL 239
+ L + L DL + + + C L E H++N + + L+N RG L
Sbjct: 204 GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263
Query: 240 VDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMAD 297
VDE L AL +GR+ GA LDV E EP + L N++ PH A + + M +
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE 323
Query: 298 LVVGNLQAHFGKKPLLTPV 316
++ + +
Sbjct: 324 EAAREIRRAITGRIPDSLK 342
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 238 bits (609), Expect = 8e-78
Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 10/258 (3%)
Query: 57 AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLI 116
A A + + +++ S G+D ID+ E + +N + VA+ A L+
Sbjct: 35 AEAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALL 93
Query: 117 LAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIG 175
LA + I E++ +++G +++ TT GK++GILG G IG +A A+AF +I
Sbjct: 94 LAHAKNILENNELMKAGIFRQ---SPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIA 150
Query: 176 YNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
Y + N++ DL +++A LT++T+ +VN +++ ++N+
Sbjct: 151 YTRSSVDQNVDVISES-PADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVA 209
Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVE-TRKA 294
R +V + +++ L + DV+ +EP++ E L N +L PHVA
Sbjct: 210 RADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGGMSGEIMDI 267
Query: 295 MADLVVGNLQAHF-GKKP 311
L N++ F G+
Sbjct: 268 AIQLAFENVRNFFEGEGH 285
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 235 bits (602), Expect = 6e-76
Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 7/263 (2%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
AE I+ L+++ T +G D IDL G+ VA VA+ + IL ++R
Sbjct: 77 TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136
Query: 122 RICESDRYVRSGEW-KKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSR 179
V GEW G GK++G +G GRIG + +R + F C ++ ++
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196
Query: 180 TEKP----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIG 235
P K+ +L ++ C ++V+ LTE+T+ + N+++I L +++N
Sbjct: 197 QMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256
Query: 236 RGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKA 294
RG +++ +V A+ G +GG DV++ +P + + N + PH + T++ +
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316
Query: 295 MADLVVGNLQAHFGKKPLLTPVV 317
A L+ +F + T
Sbjct: 317 YAAGTKDMLERYFKGEDFPTENY 339
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 230 bits (589), Expect = 3e-74
Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 20/285 (7%)
Query: 51 QAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVAD 110
+ + EL+ +P+L+++ T SVG D IDL CK+KGI V + P + VA+
Sbjct: 44 ELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAE 103
Query: 111 LAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF 170
+IL +++R+ + V+ + + + + ++G++G GRIG+ +A AF
Sbjct: 104 HTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAF 163
Query: 171 DC-IIGYNSRTEKPNLN--YKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
++ Y+ ++ +L Y +L +L ++ + T+ET H++N + I+ +
Sbjct: 164 GMKVLCYD-VVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKD 222
Query: 228 KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDV----------------PEE 271
LIN RG +VD L A +G+ G GLDVFE E + E
Sbjct: 223 GVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILE 282
Query: 272 LIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
L +NV++ PH+A T ++ + + + V ++A
Sbjct: 283 LACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKG 327
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 225 bits (577), Expect = 1e-72
Identities = 95/247 (38%), Positives = 139/247 (56%), Gaps = 7/247 (2%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
+IES PKL+++A VGLD ID+ KEKGI V N P + VA+LA+GL+ +V R
Sbjct: 57 TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
+I +DR +R G W K E M + GK++GI+G GRIG +AK A A I+ Y+
Sbjct: 117 KIAFADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175
Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
+ +N K+ L L ++ + L E T H++N + + + +LIN RG
Sbjct: 176 NEERAKEVNGKFVD-LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234
Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVLLPHVASATVETRKAMA 296
+VD + LV AL +G + GAGLDVFE EP + L +NVVL PH+ ++TVE ++
Sbjct: 235 PVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG 294
Query: 297 DLVVGNL 303
V +
Sbjct: 295 VEVAEKV 301
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 219 bits (559), Expect = 3e-69
Identities = 61/270 (22%), Positives = 113/270 (41%), Gaps = 15/270 (5%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKG--IRVANTPDVLTDDVADLAIGLILAV 119
E I+ KL++V VG D IDL + G I V VA+ + +L +
Sbjct: 75 TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134
Query: 120 LRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN 177
+R + + + +W+ K GK++ +G GRIG + +R F+ + Y
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 178 SRTEKP-----NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLI 232
P + + N+ +L + I+ V L T+ ++N+++++ L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 233 NIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENV-----VLLPHVAS 286
N RG + ++ +AL G+L G G DV+ +P + + N + PH +
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG 314
Query: 287 ATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
T++ + A V L++ F K P
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 215 bits (550), Expect = 2e-68
Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 21/285 (7%)
Query: 51 QAVVGSAAAGADAELIESLPK--LEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
VV AE +++L + ++ +VG+D ID+A+ KE G ++ N P + +
Sbjct: 48 DGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAI 107
Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
A+ A +LR+ D V + + + + + VG++G G IG + E
Sbjct: 108 AEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIME 166
Query: 169 AFDC-IIGYNSRTEKPNLNY--KYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
F +I Y P L Y +L DL ++ + H++N + I +
Sbjct: 167 GFGAKVITY-DIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 225
Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVPEE 271
V++N+ RG LVD ++ L G++ G +DV+E E +
Sbjct: 226 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 285
Query: 272 LIGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
LI NV++ P A T + M N K TPV
Sbjct: 286 LIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 214 bits (547), Expect = 1e-67
Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 19/268 (7%)
Query: 62 DAELIESLPKLEIVATCSV----GLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLIL 117
+L++ LPKL+I++ IDL C +KG+ V A+L L++
Sbjct: 62 TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120
Query: 118 AVLRRICESDRYVRSGEWKKGEFKMTTKFT---------GKSVGILGMGRIGTAIAKRAE 168
A RRI + ++ G W++ K TT G+++GI G G+IG +A
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180
Query: 169 AFDC-IIGYN---SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINA 224
AF ++ + S+ + + L +L V L +ET+ I+ +
Sbjct: 181 AFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTR 240
Query: 225 LGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-LIGLENVVLLPH 283
+ P + +N R LV+E+ +V+AL +GR G A +DVFE EP + L+ +EN + PH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300
Query: 284 VASATVETRKAMADLVVGNLQAHFGKKP 311
+ E+ + + N+
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 215 bits (550), Expect = 3e-66
Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 7/283 (2%)
Query: 38 DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
D+++ + ++ +V SA DAE++ + PKL+IVA VGLD +D+ +G+ V
Sbjct: 34 DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV 92
Query: 98 ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMG 157
N P A+ A+ L+LA R+I +D +R WK+ F T+ GK+VG++G+G
Sbjct: 93 VNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLG 151
Query: 158 RIGTAIAKRAEAFDC-IIGYN---SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEET 213
RIG +A+R AF ++ Y+ S L + L DL + + V T ET
Sbjct: 152 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLS-LDDLLARADFISVHLPKTPET 210
Query: 214 QHIVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELI 273
+++++ + P +++N RG LVDE L A+ G + AGLDVF EP L
Sbjct: 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLF 270
Query: 274 GLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
L VV+ PH+ ++T E + V +++ + + V
Sbjct: 271 ELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAV 313
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 209 bits (535), Expect = 5e-66
Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 6/255 (2%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
A++I + KL++V G+D +DL KGI V NTP+ + A+L G+I+ + R
Sbjct: 80 TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
+I ++ ++ G+W++ +F M T+ GK++GILG+GRIG +A R ++F IGY+
Sbjct: 140 QIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198
Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
S + + P L ++ C + V L T ++N ++N RG
Sbjct: 199 SPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257
Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
+VDE L+ AL G+ GA LDVF EP L+ ENV+ PH+ ++T E + +
Sbjct: 258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGE 317
Query: 298 LVVGNLQAHFGKKPL 312
+ K L
Sbjct: 318 EIAVQFVDMVKGKSL 332
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 208 bits (531), Expect = 1e-65
Identities = 68/259 (26%), Positives = 131/259 (50%), Gaps = 11/259 (4%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
++IE KL+I+A +GLD ID +++ I+V P TD +L IGL++A R
Sbjct: 59 TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYN--- 177
++ S +SG +KK + GK++GI+G GRIGT + A A ++ Y+
Sbjct: 119 KMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175
Query: 178 SRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
R + +N K L +L N ++ + +++++ + I++ + +++N R
Sbjct: 176 IREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEP---DVPEELIGLENVVLLPHVASATVETRKA 294
+ V+ L+ + +G++ DVF +EP + EL+ E V++ H+ + T E +K
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 295 MADLVVGNLQAHFGKKPLL 313
+A++ NL + ++
Sbjct: 295 VAEMTTQNLLNAMKELGMI 313
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 204 bits (521), Expect = 4e-64
Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 18/284 (6%)
Query: 51 QAVVGSAAAGADAELIESLPKLEI--VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
AV+ A+ + ++ KL + + T + G D ID KE G +A P + +
Sbjct: 47 DAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAI 106
Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
A+LA+ + +LR + +K F + + +VG++G+GRIG A+
Sbjct: 107 AELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFH 166
Query: 169 AFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
+IG + K +Y +L ++ I+ + +E +V R + +
Sbjct: 167 GMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD 226
Query: 228 KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE---------------L 272
+L+N RG LVD ++ A+ G+LGG G DV + E V + +
Sbjct: 227 GAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLV 286
Query: 273 IGLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
V++ PH+ S T E K M ++ NL+ +
Sbjct: 287 DLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 202 bits (517), Expect = 2e-63
Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 17/283 (6%)
Query: 51 QAVVGSAAAGADAELIESL--PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
+ A + E + ++ + +VG D ID+ K+ GIR++N P +
Sbjct: 46 DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 109 ADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAE 168
A+ A+ L +LR + + +++G+++K + + ++VG++G G IG K +
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFK 165
Query: 169 AFDC-IIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGP 227
F +I Y+ K + Y +L DL ++ + E+ HI+N N + P
Sbjct: 166 GFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP 225
Query: 228 KGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVPEELI 273
++IN R L+D ++S L G+L G G+D +E+E + +EL+
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285
Query: 274 GLENVVLLPHVASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
G+ NVVL PH+A T M + +L K T V
Sbjct: 286 GMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 194 bits (494), Expect = 4e-60
Identities = 67/318 (21%), Positives = 134/318 (42%), Gaps = 17/318 (5%)
Query: 5 SNNIIVLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAE 64
S ++L+ ++Y ++ +++ + A + A
Sbjct: 4 SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGE---AHILMAEPARAKP 60
Query: 65 LIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRIC 124
L+ KL + G+D + L + ++ N + +++ G +L+++R++
Sbjct: 61 LLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLP 119
Query: 125 ESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKP 183
+ W+ G+++ ILG G IG IA + F ++G + R+ +
Sbjct: 120 LYREQQKQRLWQSHP---YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS-RSGRE 175
Query: 184 NLNY-KYYP--NLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
+ + Y L + + ++V T ET H+ P +L N+GRG +
Sbjct: 176 RAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAI 235
Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHVASATVETRKAMADL 298
+E +L++AL G+LG A LDVFE EP +P + L G N+++ PH ++ + +A +
Sbjct: 236 NEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYS--FPDDVAQI 292
Query: 299 VVGNLQAHFGKKPLLTPV 316
V N +PL +
Sbjct: 293 FVRNYIRFIDGQPLDGKI 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 192 bits (490), Expect = 1e-58
Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 7/235 (2%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
++I + KL + ++G +++DL ++GI V N P T VA+L IG +L +LR
Sbjct: 60 TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
+ E++ G K + + GK +GI+G G IGT + AE+ + Y+
Sbjct: 120 GVPEANAKAHRGVGNKLAA-GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN 178
Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
+ P N +L DL + ++ + T++++ + I+ + P +LIN RG +V
Sbjct: 179 KLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238
Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENVVLLPHVASATVE 290
D L AL L GA +DVF EP + L +NV+L PH+ +T E
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQE 293
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 188 bits (480), Expect = 6e-57
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
E+ + +L V SVG ++++L +++GI V N P T VA+L IG I+ ++R
Sbjct: 71 TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
RI +G W+K + + GK++GI+G G IG+ + AE+ + Y++
Sbjct: 131 RIFPRSVSAHAGGWEKTAI-GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD 189
Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
+ N K +L +L ++ + ++ T ++ + + LIN RG V
Sbjct: 190 KLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 241 DEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENVVLLPHVASATVE 290
D L L +G L GA +DVF EP E L GLENV+L PH+ +T E
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE 304
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 179 bits (455), Expect = 2e-54
Identities = 63/272 (23%), Positives = 113/272 (41%), Gaps = 19/272 (6%)
Query: 57 AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTP------DVLTDDVAD 110
A + + +L+ V G+D I + A+ P + + +
Sbjct: 45 ALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQE 104
Query: 111 LAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAF 170
A+ +L RR + WK SVGI+G G +G +A+ +A+
Sbjct: 105 YAVSQVLHWFRRFDDYQALKNQALWKPLP---EYTREEFSVGIMGAGVLGAKVAESLQAW 161
Query: 171 DC-IIGYNSRTEKPNLNYKYY---PNLIDLASNCQILVVACSLTEETQHIVNRQVINALG 226
+ + SR+ K + Y L + ++L+ T +T I+N ++++ L
Sbjct: 162 GFPLRCW-SRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLP 220
Query: 227 PKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LIGLENVVLLPHV 284
++N+ RG+ V E +L++AL G+L GA LDVF EP +P+E L V + PH+
Sbjct: 221 DGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHI 279
Query: 285 ASATVETRKAMADLVVGNLQAHFGKKPLLTPV 316
A+ T D + + +P+ V
Sbjct: 280 AAVT--RPAEAIDYISRTITQLEKGEPVTGQV 309
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 170 bits (432), Expect = 2e-50
Identities = 56/254 (22%), Positives = 98/254 (38%), Gaps = 25/254 (9%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
+ L+ + V T + G D +D A K+ GI + P V + +L +
Sbjct: 53 NESLLSG-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTE 181
R +++GI+G+G +G+ + R EA
Sbjct: 112 R-------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR 152
Query: 182 KPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGRG 237
+ + L +L +L L ++ T H+ + +I L P +LIN RG
Sbjct: 153 AARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212
Query: 238 LLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMAD 297
+VD L++ L G+ LDV+E EPD+ L+ ++ H+A T+E +
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLEGKARGTT 271
Query: 298 LVVGNLQAHFGKKP 311
V A G++
Sbjct: 272 QVFEAYSAFIGREQ 285
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 169 bits (430), Expect = 5e-50
Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
+ + V TC++G D +DL E GI ++ P V D +G +LA+
Sbjct: 50 SRAALAG-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE 108
Query: 122 RICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRT 180
++ G++G G++G + + ++ +
Sbjct: 109 V-------------------RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR 149
Query: 181 EKPNLNYKYYPNLIDLASNCQILVVACSLTEE----TQHIVNRQVINALGPKGVLINIGR 236
+ + ++ L L + ++ + L + T+H+++ + AL P L+N R
Sbjct: 150 QAREPDGEFVS-LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASR 208
Query: 237 GLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVASATVETRKAMA 296
G +VD L L G LDV+E EP EL ++ PH+A ++E +
Sbjct: 209 GAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIAGYSLEGKLRGT 267
Query: 297 DLVVGNLQAHFGKKP 311
+ A G
Sbjct: 268 AQIYQAYCAWRGIAE 282
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 54.2 bits (130), Expect = 1e-08
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 148 GKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-------NLNYKYYPNLIDLASNC 200
G +V +LG+GR+G ++A++ A + +R + + +
Sbjct: 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV 214
Query: 201 QILVVACSLTEETQHIVNRQVINALGPKGVLINIGRG 237
+ + +V V+ + +I++
Sbjct: 215 DVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 1e-07
Identities = 54/355 (15%), Positives = 95/355 (26%), Gaps = 134/355 (37%)
Query: 11 LMVCPVS----------NYLEQEIEKSFKVFKLWHFEDKEQF--INTHKDSIQAVVGSAA 58
L+ P+S +Y+ + K+ E + H + V A
Sbjct: 231 LLSIPISCPLIGVIQLAHYV-----VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 59 AGADAELIE-----------------------SLPKLEIVATC------------SV-GL 82
+ SLP I+ S+ L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNL 344
Query: 83 DK------IDLARCK---EKGIRVA--NTPD--VLTDDVADLAIGLILAVLRRICESDRY 129
+ ++ K + ++ N V++ L GL L LR+
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-GLNLT-LRKAKAPSGL 402
Query: 130 VRSGEWKKGEF-KMTTKFTGK--SVG------ILG--MGRIGTAIAKRAEAF---DCII- 174
+S + F + KF+ + V +L I + K +F D I
Sbjct: 403 DQS----RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 175 ------GYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ----HIVNRQVINA 224
G + R +++ ++D I+ + TQ HI+
Sbjct: 459 VYDTFDGSDLRVLSGSIS----ERIVD-----CIIRLPVKWETTTQFKATHIL------D 503
Query: 225 LGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDV-----FEHEPDVPEELIG 274
GP G +G L G G+ V + PD + G
Sbjct: 504 FGP-GGASGLGV--------LTHRNKDGT----GVRVIVAGTLDINPD---DDYG 542
Score = 37.3 bits (86), Expect = 0.007
Identities = 47/272 (17%), Positives = 76/272 (27%), Gaps = 94/272 (34%)
Query: 16 VSNYLEQEIEKSFK-VFK--LWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKL 72
VS+ +E F V L FE+ ++ D I A+ D L++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFEN--CYLE-GND-IHALAAKLLQENDTTLVK----- 118
Query: 73 EIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRS 132
+L + +A P + A L AV
Sbjct: 119 -----------TKELIKNYITARIMAKRPFDKKSNSA-----LFRAV------------- 149
Query: 133 GEWKKGEFKMTTKFTGKSVGILGMG------------------RIGTAIAKRAEAFDCII 174
+G ++ F G G G +G I AE +I
Sbjct: 150 ---GEGNAQLVAIF-----G--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 175 GYNSRTEKPNLNYKYYPNLIDLAS---------NCQILV---VACSLTEETQ--HIVNRQ 220
EK + +++ + L+ ++C L Q H V
Sbjct: 200 RTTLDAEK------VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV-- 251
Query: 221 VINALG--PKGVLINIGRGLLVDEHELVSALL 250
LG P G L + +G LV+A+
Sbjct: 252 TAKLLGFTP-GELRSYLKGATGHSQGLVTAVA 282
Score = 29.6 bits (66), Expect = 1.9
Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 61/217 (28%)
Query: 127 DRYVRSGE----WKKGEFKMTTKFTG-----------KSVGILGMGRIGTAIAKRAEAFD 171
D Y S W + + + G ++ I G G I + A
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTY-GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 172 CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQ------------HIVNR 219
+ + + + + + + S T+ TQ + ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEK--GLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 220 QVINA--------LG-------PKGVL-----INI--GRGLLVDEHELVSALLQGRLGGA 257
+I A LG V+ + + RG+ + A+ + LG +
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV-----AVPRDELGRS 1805
Query: 258 GLDVFEHEPDVPEELIGLENV-VLLPHVASAT---VE 290
+ P E + ++ V T VE
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Score = 28.5 bits (63), Expect = 4.2
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 263 EHEPDVPEELIGLENVVLLPHVASATVETRKAMADLVVGNLQAHF 307
+ EP P EL+G L +V+S ++ D V+ F
Sbjct: 51 DDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 43/329 (13%), Positives = 92/329 (27%), Gaps = 83/329 (25%)
Query: 35 HFEDKE--QFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKE 92
H D E + +KD + + D + ++ +PK I++ + D I +++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEI--DHIIMSKDAV 61
Query: 93 KGIRV---------ANTPDVLTDDVADLAIGLILAVLRRIC-----ESDRYV--RSGEWK 136
G ++V + +++ ++ + Y+ R +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 137 KGE---------FKMTTKFT--------GKSVGILGMGRIG----TAIAKRAEAFDCIIG 175
+ + K K+V I G+ G + C +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 176 YN------SRTEKP--------NLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221
+ P L Y+ PN + + + + Q + R +
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---RIHSIQAELRRLL 238
Query: 222 INALGPKGVLI-------------NIG-RGLLVDEHELVSALLQGRLGGAGLDVFEHEPD 267
+ +L+ N+ + LL + V+ L +H
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSM 296
Query: 268 V--PEELIGLENVVL------LPHVASAT 288
P+E+ L L LP T
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 37.4 bits (86), Expect = 0.003
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 142 MTTKFTGKSVGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKP------NLNYKYYPNLI 194
M + ++G G + T +AK I+ SRTE+ + +Y +L
Sbjct: 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLA 63
Query: 195 DLASNCQILVVACS 208
++ ++ +V+
Sbjct: 64 EVNPYAKLYIVSLK 77
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 34.0 bits (77), Expect = 0.053
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 150 SVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP-----NLNYKYYPNLIDLASNCQILV 204
+ +G G + + + I SR+ + L ++
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 205 VACS 208
V
Sbjct: 64 VIVP 67
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 32.4 bits (73), Expect = 0.13
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 143 TTKFTGKSVGILGMGRIGTAIAKRA 167
F G + +LG G +G +A
Sbjct: 14 NLYFQGMKIAVLGTGTVGRTMAGAL 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.14
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 47 KDSIQAVVGSAAAGADAELIESLPKLEIVAT 77
K +++ + S AD +S P L I AT
Sbjct: 19 KQALKKLQASLKLYAD----DSAPALAIKAT 45
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 32.1 bits (74), Expect = 0.19
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 147 TGKSVGILGMGRIGTAIAK---RAEAF--DCIIGYNSRTEKPNLNYKYYPNLIDLASNCQ 201
+G +G+G++G+A+A A + + Y + Y + +LA +C
Sbjct: 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN--TTLNYMSSNEELARHCD 60
Query: 202 ILVVA 206
I+V A
Sbjct: 61 IIVCA 65
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 29.9 bits (68), Expect = 0.93
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 146 FTGKSVGILGMGRIGTAIAK---RAEAF--DCIIGYNSRTEKPNLNY------KYYPNLI 194
F SVG +G G++ A+AK A I+ + + ++ K P+
Sbjct: 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNK 79
Query: 195 DLASNCQILVVA 206
+ + +L +A
Sbjct: 80 ETVQHSDVLFLA 91
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 29.6 bits (66), Expect = 0.94
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 151 VGILGMGRIGTAIAKRA 167
V I G G G ++ +
Sbjct: 22 VCIFGTGDFGKSLGLKM 38
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.8 bits (66), Expect = 1.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 143 TTKFTGKSVGILGMGRIGTAIAKRA 167
F G + I G G +G AI
Sbjct: 14 NLYFQGMEITIFGKGNMGQAIGHNF 38
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 29.5 bits (66), Expect = 1.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 151 VGILGMGRIGTAIAKRA 167
VGILG G ++A R
Sbjct: 31 VGILGSGDFARSLATRL 47
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 29.8 bits (68), Expect = 1.1
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 147 TGKSVGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPN-----LNYKYYPNLIDLASNC 200
+GI+G+G++ +AI K + +I S E+ L Y + DL
Sbjct: 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61
Query: 201 QILVVA 206
++++
Sbjct: 62 DLVILG 67
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 30.0 bits (68), Expect = 1.1
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 55 GSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPD-VLTDDVADL 111
G + A I + P E+ + ++ + + + + D DL
Sbjct: 14 GMSGQVFHAPFISTNPHFELYKIVERSKEL---SKERYPQASIVRSFKELTEDPEIDL 68
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 142 MTTKFTGKSVGILGMGRIGTAIAKRAEAFDC-IIGYNSRTE 181
MTTK + V ILG+G IG ++ + A + + GYN
Sbjct: 2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS 42
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.4 bits (64), Expect = 1.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 145 KFTGKSVGILGMGRIGTAIAKR 166
+ K ++G+GR G +I K
Sbjct: 3 RIKNKQFAVIGLGRFGGSIVKE 24
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 28.2 bits (64), Expect = 3.4
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 149 KSVGILGMGRIGTAIAK---RAEAF--DCIIGYNSRTEKPNLNYKYY-----PNLIDLAS 198
K +G +G G +G A+ + II + T + Y + ++A
Sbjct: 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAK 62
Query: 199 NCQILVVA 206
N IL+++
Sbjct: 63 NADILILS 70
>1zlp_A PSR132, petal death protein; TIM-barrel, helix
swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate
lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus
caryophyllus}
Length = 318
Score = 28.1 bits (63), Expect = 3.4
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 57 AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLI 116
AGADA +E+ ++ + S + +A E G TP ++ ++ LI
Sbjct: 199 KEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGK----TPLHTPEEFKEMGFHLI 254
Query: 117 L 117
Sbjct: 255 A 255
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 28.1 bits (62), Expect = 3.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 151 VGILGMGRIGTAIAKRAEAFDC 172
VG++G G IG +A+ E
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGF 24
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine
hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1
c.40.1.1
Length = 349
Score = 28.3 bits (64), Expect = 3.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 63 AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
E+I S +E+VAT L DL + PDVLT DV
Sbjct: 20 TEIINSHSDMEMVATAPDPLVARDLIK--------KFNPDVLTLDV 57
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein
interaction, histidine kinase, response regulator,
phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB:
3kyi_B*
Length = 145
Score = 27.6 bits (62), Expect = 3.7
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 63 AELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDV 108
A I++LP ++VA + G + A K + D++ D+
Sbjct: 30 ASFIKTLPDFKVVAQAANGQE----ALDK---LAAQPNVDLILLDI 68
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 28.0 bits (63), Expect = 4.1
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
D+EL SLP VA+ GL+ LA C + P + +A I + L
Sbjct: 155 DSELTMSLPVEMSVAS---GLNG--LAHCIDSLWGPNADP--INAVLAAEGIRALNQGLP 207
Query: 122 RICE--SDRYVRSG 133
+I R
Sbjct: 208 KIVANPHSIEGRDE 221
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 27.8 bits (62), Expect = 4.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 148 GKSVGILGMGRIGTAIAKRA 167
G V +LG+GR G IA+
Sbjct: 157 GSQVAVLGLGRTGMTIARTF 176
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 27.7 bits (61), Expect = 4.3
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQI-LVVACSL 209
V I+GMG IG + + F+ I Y+ ++ L + + VV C+
Sbjct: 15 VLIIGMGNIGKKLVELGN-FEKIYAYDRISKDI----PGVVRLDEFQVPSDVSTVVECA- 68
Query: 210 TEETQHIVNRQVINALGPKGVLINIGRGLLVDE 242
+ V + L I I DE
Sbjct: 69 ---SPEAVKEYSLQILKNPVNYIIISTSAFADE 98
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 27.2 bits (61), Expect = 4.7
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 149 KSVGILGMGRIGTAIAKR 166
++G G + +
Sbjct: 7 YEYIVIGSEAAGVGLVRE 24
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 27.7 bits (62), Expect = 5.1
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 57 AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLI 116
AGADA E+L E + ++ LA E G TP ++ A++ ++
Sbjct: 185 VKAGADAIFPEALQSEEEFRLFNSKVNAPLLANMTEFG----KTPYYSAEEFANMGFQMV 240
Query: 117 L 117
+
Sbjct: 241 I 241
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 27.8 bits (61), Expect = 5.4
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 52 AVVGSAAAG-ADAELIESLPKLEIVATCSVGLDKIDLAR--CKEKGIRVANTPDVLTDDV 108
A + G E + +EIVA + A+ K+ G + A DD
Sbjct: 24 AFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDY 83
Query: 109 ADL 111
++
Sbjct: 84 KNM 86
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.9 bits (63), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 141 KMTTKFTGKSVGILGMGRIGTAIAK 165
K T F K V +LG+ R G A A+
Sbjct: 2 KTITTFENKKVLVLGLARSGEAAAR 26
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 27.5 bits (62), Expect = 5.6
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 142 MTTKFTGKSVGILGMGR-IGTAIAKR--AEAFDCIIGYNSRTEK 182
+ + GK + G GR IG A+A ++ Y + T+
Sbjct: 12 IPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKD 55
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 27.2 bits (61), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 143 TTKFTGKSVGILGMGR-IGTAIAKR--AEAFDCIIGYNSRTEKPNL 185
+ GK++ I G R IG AIAKR A+ + + S P L
Sbjct: 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKL 49
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 27.2 bits (61), Expect = 6.5
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 151 VGILGMGRIGTAIAKRAEAFDC-IIGYNSRTEKPNLNYKYYPNLIDLAS 198
+ ++G G + +A+ AE I+G T K Y+ Y ++ D+
Sbjct: 6 ILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKG 54
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 27.0 bits (60), Expect = 6.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 153 ILGMGRIGTAIAKR 166
ILGMGRIGT
Sbjct: 44 ILGMGRIGTGAYDE 57
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 27.3 bits (60), Expect = 7.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 150 SVGILGMGRIGTAIAKRAEA 169
VGI G +A++ ++
Sbjct: 8 RVGIFDDGSSTVNMAEKLDS 27
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 27.2 bits (61), Expect = 7.5
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
D L LP+ V + L+ +A E P + +A+ I + A +
Sbjct: 156 DPALTVGLPRGLSVTS---ALNA--IAHAAEGLYARDANP--VMSLMAEEGIRALAAGIP 208
Query: 122 RICE--SDRYVRSG 133
+ +D RS
Sbjct: 209 AVFNDPADLDARSQ 222
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 27.3 bits (61), Expect = 7.6
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 57 AAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLI 116
AGA+ E++ +L + + + LA E G TP TD++ + +
Sbjct: 177 VEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFG----ATPLFTTDELRSAHVAMA 232
Query: 117 L 117
L
Sbjct: 233 L 233
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 27.3 bits (59), Expect = 7.7
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 84 KIDLARCKEKGIRVANTPDVLTD-----DVADLAIGLILAVLRRICESDRYVRSGEWKKG 138
ID R + + N P V D +A LA L RR+ E + GE+
Sbjct: 252 VIDYPRYMQAIYDIINKPIVSFDLTTRRGMAPLAFALAALSGRRMIE---IMLQGEFSVA 308
Query: 139 EFKMTTKFTG 148
K T F G
Sbjct: 309 G-KYTVTFLG 317
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 27.2 bits (61), Expect = 7.7
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 130 VRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA---KRAEAFDCIIGYNSRTE 181
V G K K+ + ++V I+G+G +G + A +R+ I GY+ E
Sbjct: 15 VPRGSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE 69
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 27.1 bits (59), Expect = 7.8
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 142 MTTKFTGKSVGILGMGRIGTAIAK 165
MT K V + G G ++
Sbjct: 1 MTVK-----VCVCGGGNGAHTLSG 19
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 27.1 bits (61), Expect = 7.9
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 136 KKGEFKMTTKFTGKSVGILGMGRIG 160
+ + + K + I G GRIG
Sbjct: 14 AQTQGPGSMK-----LAINGFGRIG 33
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 27.2 bits (61), Expect = 8.0
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLR 121
DAEL LP + + GL+ +A E P + +A + ++ L
Sbjct: 154 DAELTLGLPVAISMTS---GLNA--MAHAAEALYARDRNP--IASMMAVEGLRAMIEALP 206
Query: 122 RICE--SDRYVRSG 133
+ + D R
Sbjct: 207 VVRQAPHDIGARET 220
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2,
protein structure initiative; 2.00A {Agrobacterium
tumefaciens str} SCOP: e.62.1.2
Length = 195
Score = 26.9 bits (59), Expect = 8.2
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 227 PKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLLPHVAS 286
P G++ I V E+++ L QG A D F+ + E+ G ++++
Sbjct: 37 PDGIVEAIAAKAEVAPAEILAILPQGAAVSAPADRFD---AIWNEMRGWGEILMIVQTGD 93
Query: 287 ATVE 290
+E
Sbjct: 94 IVLE 97
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
protein complex, sodium,calcium EX membrane protein;
HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
PDB: 3v5s_A*
Length = 320
Score = 26.8 bits (60), Expect = 8.6
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 268 VPEELIGLENVVL---LPHVASATVETRKAMADLVVGNL 303
+ +++IG V LP + + ++ + +V+GN+
Sbjct: 195 ISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNV 233
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 8.8
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 12/64 (18%)
Query: 23 EIEKSFKVFKLWHFEDKEQ-----FINTHKDSIQAVVGSAAAGADAELIESLPKLEIVAT 77
+I + K + D + +V A + + + + V
Sbjct: 989 QIPTGWNA-KTYGISDDIISQVDPIT------LFVLVSVVEAFIASGITDPYEMYKYVHV 1041
Query: 78 CSVG 81
VG
Sbjct: 1042 SEVG 1045
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.1 bits (59), Expect = 10.0
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 136 KKGEFKMTTKFTGKSVGILGMGRIGTAIAKR 166
+ + GK+V +LG G + +
Sbjct: 11 HHSSGHIEGRHMGKNVLLLGSGFVAQPVIDT 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,948,752
Number of extensions: 311060
Number of successful extensions: 1161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1059
Number of HSP's successfully gapped: 117
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)