RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042102
(317 letters)
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 152 bits (385), Expect = 4e-46
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 7/191 (3%)
Query: 104 LTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFK--MTTKFTGKSVGILGMGRIGT 161
+T A++A+ L+L RR E ++ +R+ W E + K K++GI G G IG
Sbjct: 1 VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60
Query: 162 AIAKRAEAFDCIIGYNSRTEKPNLNYK-----YYPNLIDLASNCQILVVACSLTEETQHI 216
A+AKRA+ FD I Y + + ++ +L L S Q + T ET++
Sbjct: 61 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120
Query: 217 VNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLE 276
N+ I +L +++N RG LVD +V+AL GRL AG DVF EP++ E L
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLP 180
Query: 277 NVVLLPHVASA 287
N L PH+ SA
Sbjct: 181 NTFLFPHIGSA 191
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 127 bits (319), Expect = 2e-36
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
T VA+L IG +L +LR + E++ G K K +GI+G G IGT +
Sbjct: 2 TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLG 60
Query: 165 KRAEAFDCIIGYNSRTEKPNL-NYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
AE+ + + K L N +L DL + ++ + T++++ + I+
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 120
Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-----LIGLENV 278
+ P +LIN RG +VD L AL L GA +DVF EP + L +NV
Sbjct: 121 LMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180
Query: 279 VLLPHVA 285
+L PH+
Sbjct: 181 LLTPHIG 187
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 127 bits (318), Expect = 2e-36
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 4/183 (2%)
Query: 105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
A+ A+ L+LA R+I +D +R WK+ F T F K+VG++G+GRIG +A
Sbjct: 2 IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVA 60
Query: 165 KRAEAFDCIIGYNSRTEKPNLNYK---YYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221
+R AF + P + +L DL + + V T ET +++++
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEELIGLENVVLL 281
+ P +++N RG LVDE L A+ G + AGLDVF EP L L VV+
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVT 180
Query: 282 PHV 284
PH+
Sbjct: 181 PHL 183
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 122 bits (306), Expect = 2e-34
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFK------MTTKFTGKSVGILGMGRI 159
++ AD + IL + RR + +R G + + + G+++GI+G+GR+
Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60
Query: 160 GTAIAKRAEAFDCIIGYNSRT----EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQH 215
G A+A RA+AF + + + L + L DL + + + C L E H
Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120
Query: 216 IVNRQVINALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE--LI 273
++N + + L+N RG LVDE L AL +GR+ GA LDV E EP + L
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180
Query: 274 GLENVVLLPHVA 285
N++ PH A
Sbjct: 181 DAPNLICTPHAA 192
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 119 bits (299), Expect = 2e-33
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 7/185 (3%)
Query: 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEF-KMTTKFTGKSVGILGMGRIGTAIAKR 166
VA+ + +IL+++R S + R G W + VG + GRIG A+ +R
Sbjct: 3 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62
Query: 167 AEAFDCIIGYNSRT-----EKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQV 221
FD + Y R + LN ++ D+ C ++ + C L ET+H++N +
Sbjct: 63 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122
Query: 222 INALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE-ELIGLENVVL 280
+ ++N RG L D + AL GRL G DV+ +P + + +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182
Query: 281 LPHVA 285
PH++
Sbjct: 183 TPHIS 187
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 99.8 bits (247), Expect = 5e-26
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Query: 106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK 165
D VA+ A+ L+LA +RI + ++ G++ + G+ V +LG+G IGT + K
Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGK 59
Query: 166 RAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
A + SRT K +++ +L + + V A L + T+ +V Q + +
Sbjct: 60 ILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 118
Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPE--ELIGLENVVLLPH 283
V +N+GR ++D ++ L + DV+ D + E L NVV P
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178
Query: 284 VA 285
VA
Sbjct: 179 VA 180
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 99 bits (247), Expect = 9e-26
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 105 TDDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIA 164
+A+ A+ L +LR + + +++G+++K + + ++VG++G G IG
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 165 KRAEAFDCIIGYNSRTEKPNLNYKYYP-NLIDLASNCQILVVACSLTEETQHIVNRQVIN 223
K + F + + + +L DL ++ + E+ HI+N N
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN 121
Query: 224 ALGPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEP--------------DVP 269
+ P ++IN R L+D ++S L G+L G G+D +E+E +
Sbjct: 122 LMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW 181
Query: 270 EELIGLENVVLLPHVA 285
+EL+G+ NVVL PH+A
Sbjct: 182 DELLGMPNVVLSPHIA 197
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 92.9 bits (229), Expect = 2e-23
Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 17/194 (8%)
Query: 108 VADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRA 167
+A+ A +LR+ D V + + + + + VG++G G IG +
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 168 EAFDCIIGYNSRTEKPNLNYK--YYPNLIDLASNCQILVVACSLTEETQHIVNRQVINAL 225
E F + P L K Y +L DL ++ + H++N + I +
Sbjct: 63 EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122
Query: 226 GPKGVLINIGRGLLVDEHELVSALLQGRLGGAGLDVFEHEPDVPEE-------------- 271
V++N+ RG LVD ++ L G++ G +DV+E E + E
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 182
Query: 272 LIGLENVVLLPHVA 285
LI NV++ P A
Sbjct: 183 LIARPNVLVTPKTA 196
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 80.0 bits (197), Expect = 3e-19
Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 43/151 (28%)
Query: 20 LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCS 79
E+E+ K FK+ + + E + + AE + +P+L+ + +
Sbjct: 13 AEEELRKYFKIVRGGDLGNVEAALVSR--------------ITAEELAKMPRLKFIQVVT 58
Query: 80 VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWKKGE 139
GLD + VA + +++ +R +
Sbjct: 59 AGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVRNL---------------- 101
Query: 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAF 170
G IAKR +
Sbjct: 102 ------------ITYATGGRPRNIAKREDYI 120
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 69.2 bits (169), Expect = 3e-15
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 1/117 (0%)
Query: 20 LEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCS 79
+E I K + ++ + + E +E L I+
Sbjct: 14 VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIG 73
Query: 80 VGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGEWK 136
G D ID+ + GI V N P +I + R I + K
Sbjct: 74 SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPDSLK 129
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 68.6 bits (167), Expect = 4e-15
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIESL 69
VL+ ++ + +V + D+++ + + A++ +A DAE++ +
Sbjct: 5 VLIADKLAPSTVAALGDQVEV-RWVDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAA 62
Query: 70 PKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRY 129
PKL+IVA VGLD +D+ +G+ V N P + A G +A R+ + +
Sbjct: 63 PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF 122
Query: 130 VRSGEWK 136
V
Sbjct: 123 VPDAVNV 129
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 68.1 bits (166), Expect = 6e-15
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 2/116 (1%)
Query: 10 VLMVCPVSNYLEQEIEKSFKVFKLWHFE--DKEQFINTHKDSIQAVVGSAAAGADAELIE 67
+L+ P+ +S+ V ++ I T K ++ +
Sbjct: 4 ILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63
Query: 68 SLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRI 123
++ ++T S+G D IDL CK +GI+V N P T D+A +
Sbjct: 64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 68.1 bits (166), Expect = 2e-14
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 62 DAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLA--------I 113
E I L++ T +G D +DL ++ + VA + + A I
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREI 163
Query: 114 GLILAVLRRICESDRYVRSGEW 135
R I + V+ G
Sbjct: 164 LECFFEGRPIRDEYLIVQGGAL 185
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 63.9 bits (155), Expect = 2e-13
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Query: 19 YLEQEIEKSFKVFKLWHFEDKEQFINTHKDSIQAVVGSAAAGADAELIES--LPKLEIVA 76
Y +Q + + + E + K + A + E ++ +
Sbjct: 15 YFKQWAKDTGNTLEYHTEFLDENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLT 73
Query: 77 TCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSG 133
+VG D ID+ K+ GIR++N P V ++ + ++ + + +
Sbjct: 74 IRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 60.7 bits (147), Expect = 4e-12
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 19 YLEQEIEKSFKVFKLWHFED--KEQFINTHKDSIQAVVGSAAAGADAELIESLP--KLEI 74
+L++ + V ++ + + + + K VV AE +++L +
Sbjct: 15 FLKEWEDAHKDV-EVEYTDKLLTPETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72
Query: 75 VATCSVGLDKIDLARCKEKGIRVANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSGE 134
++ +VG+D ID+A+ KE G ++ N P A+ ++ + E
Sbjct: 73 MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLELVEGKEAE 129
Query: 135 WK 136
Sbjct: 130 TP 131
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 50.8 bits (121), Expect = 1e-08
Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 38 DKEQFINTHKDSIQAVVGSAAAGADAELIESLPKLEIVATCSVGLDKIDLARCKEKGIRV 97
D EQ + +D + + ++I + KL + ++G +++DL ++GI V
Sbjct: 37 DDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPV 95
Query: 98 ANTPDVLTDDVADLAIGLILAVLRRICESDRYVRSG 133
N P T + + + L + ++ + +
Sbjct: 96 FNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 45.3 bits (107), Expect = 1e-06
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 1/119 (0%)
Query: 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVV 205
GK + G G +G A+ F + L +
Sbjct: 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81
Query: 206 ACSLTEETQHIVNRQVINALGPKGVLINIG-RGLLVDEHELVSALLQGRLGGAGLDVFE 263
T I+ + + ++ NIG + +D L ++ +D +
Sbjct: 82 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140
>d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal
xylanase z {Clostridium thermocellum [TaxId: 1515]}
Length = 255
Score = 33.1 bits (74), Expect = 0.032
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 135 WKKGEFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLI 194
+ + +G G+ + F I S N + +P+
Sbjct: 125 ESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPI-SAAPNTYPNERLFPDGG 183
Query: 195 DLASNCQILVVACSLTEETQHIVNRQVINALGPKGV 230
A L+ T ++ ++V +
Sbjct: 184 KAAREKLKLLFIACGTNDSLIGFGQRVHEYCVANNI 219
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 31.6 bits (71), Expect = 0.035
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 9/110 (8%)
Query: 140 FKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPN----LNYKYYPNLID 195
+ + + I+G G + A+ + N+ T P N +
Sbjct: 4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEG 63
Query: 196 LASNCQILVVACSLTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHEL 245
+ ++ VN++V +A + + N+ VD +
Sbjct: 64 PFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKA 108
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 31.2 bits (70), Expect = 0.071
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACSLT 210
V I+GMG IG + + + P L + + V +
Sbjct: 5 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG-----VVRLDEFQVPSDVSTVVECAS 59
Query: 211 EET 213
E
Sbjct: 60 PEA 62
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 30.3 bits (67), Expect = 0.15
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 149 KSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKP 183
K ++G+GR G +I K + E+
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEK 35
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 30.3 bits (67), Expect = 0.20
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 149 KSVGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVAC 207
K+ +LG+G G A A A ++ ++ ++ + +
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDL 61
Query: 208 SLTEETQHIVNRQVI 222
++ + + VI
Sbjct: 62 LTSDIGLAVKDADVI 76
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 28.9 bits (64), Expect = 0.21
Identities = 10/47 (21%), Positives = 15/47 (31%)
Query: 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPN 192
+ GK+V I+G+G G + A P K
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEA 49
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 30.1 bits (66), Expect = 0.22
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYN 177
+G++G+G IG ++A +IG +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVS 30
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 29.4 bits (65), Expect = 0.40
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 151 VGILGMGRIGTAIAKRAEAFD-----CIIGYNSRTEKPNLNYKYYPNLIDLASNCQ 201
V ++G+GR G+ + + +IG+ SR E +L+ +L D + +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQE 65
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 28.8 bits (63), Expect = 0.69
Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPN 184
+ ++G+ +G + + + +N K +
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVD 39
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 28.2 bits (62), Expect = 0.76
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPN----LNYKYYPNLIDLASNCQILVV 205
VG +G+G +G ++K +A ++ + E + +A C +++
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 206 ACSLTEETQHIVNRQVINALGPKGVLINIGRGLLV 240
+ + + LG G++ G ++
Sbjct: 63 MLPNSPHVKEVA-------LGENGIIEGAKPGTVL 90
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 28.4 bits (62), Expect = 0.88
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPN 184
VG++G+G +G +A AE + +N K
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSE 38
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 27.9 bits (61), Expect = 0.90
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 151 VGILGMGRIGTAIAKR-----AEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVV 205
VG +G G + +A R E + G + T + + +C +++
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVIS 62
Query: 206 AC 207
A
Sbjct: 63 AV 64
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 28.3 bits (62), Expect = 1.0
Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 27/173 (15%)
Query: 149 KSVGILGMGRIGTAIAKR-AEAFDCIIGYNSRTE------------------KPNLNYKY 189
+ G G GTA+A ++ + ++ E + N +
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF 67
Query: 190 YPNLIDLASNCQILVVACS---LTEETQHIVNRQVINALGPKGVLINIGRGLLVDEHELV 246
++ + +I++ L + + A + ++ +G+ +
Sbjct: 68 TSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFP 127
Query: 247 SALLQGRLGGAGLDVFEHEPDVPEELI-GLENVVLLPHVASATVETRKAMADL 298
+ ++ L L V P E+ G+ V +ASA + + + +
Sbjct: 128 AEIIGEFLPSPLLSVLA-GPSFAIEVATGVFTCVS---IASADINVARRLQRI 176
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 28.0 bits (61), Expect = 1.2
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 149 KSVGILGMGRIGTAIA---KRAEAFDCIIGYN 177
++V I+G+G +G + A +R+ I GY+
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYD 33
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 27.3 bits (59), Expect = 1.6
Identities = 4/71 (5%), Positives = 17/71 (23%), Gaps = 5/71 (7%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKP----NLNYKYYPNLIDLASNCQILVV 205
+ +G G + + + ++ + ++ + L ++ V
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 206 ACSLTEETQHI 216
Sbjct: 62 IVPDRYIKTVA 72
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 27.2 bits (59), Expect = 1.8
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 151 VGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPN 192
+ I G+GR+G +AK I + +
Sbjct: 3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID 44
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase
GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 285
Score = 27.7 bits (61), Expect = 1.8
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 106 DDVADLAIGLILAVLRRICESDRYVRSGEWKKGEFKMTTKFTGKSVGILGMGRIGTAIAK 165
+A+ I L C + + + + ILGMG++G
Sbjct: 119 SYLAETLIVAARDWLYDACCREWGTPCNA----------QGEAQPLLILGMGKLGGGELN 168
Query: 166 RAEAFDCIIGY 176
+ D I +
Sbjct: 169 FSSDIDLIFAW 179
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 27.2 bits (59), Expect = 2.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 145 KFTGKSVGILGMGRIGTAIA 164
K K V ++G G +G IA
Sbjct: 1 KIIVKHVTVIGGGLMGAGIA 20
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 26.8 bits (58), Expect = 2.1
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVAC 207
V +G+G +G +A A F ++ + + ++ + L + V+
Sbjct: 3 VAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFT 60
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 177
Score = 26.9 bits (58), Expect = 2.2
Identities = 14/83 (16%), Positives = 27/83 (32%)
Query: 145 KFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQILV 204
+ K++ I G G A+A + II N EK K ++ ++
Sbjct: 15 RVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF 74
Query: 205 VACSLTEETQHIVNRQVINALGP 227
+ + I+ + P
Sbjct: 75 SGLDVDLDGVDIIINATPIGMYP 97
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 26.9 bits (58), Expect = 2.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 151 VGILGMGRIGTAIAK 165
V ILG G +G+A++
Sbjct: 3 VSILGAGAMGSALSV 17
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 26.8 bits (58), Expect = 2.6
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 149 KSVGILGMGRIGTAIAKR-AEAFDCIIGYN 177
K + +G+G +G +A +A + ++
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFD 31
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 27.0 bits (59), Expect = 2.8
Identities = 7/80 (8%), Positives = 21/80 (26%)
Query: 139 EFKMTTKFTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLAS 198
+ G +V + G+G +G ++A A + + + +
Sbjct: 18 AHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALE 77
Query: 199 NCQILVVACSLTEETQHIVN 218
+ ++
Sbjct: 78 DVLSTPCDVFAPCAMGGVIT 97
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 26.2 bits (57), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 5/19 (26%)
Query: 142 MTTKFTGKSVGILGMGRIG 160
M K VGI G GRIG
Sbjct: 1 MPIK-----VGINGFGRIG 14
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 26.0 bits (56), Expect = 4.8
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 149 KSVGILGMGRIGTAIA 164
K +LG G +G IA
Sbjct: 5 KQAAVLGAGIMGGGIA 20
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 26.1 bits (57), Expect = 4.8
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 151 VGILGMGRIGTAIAKRAEAFD--CIIGYNSRTEKPNLNYKYYPNLIDLASNCQILVVACS 208
V + G G IG +A ++G + + + +
Sbjct: 4 VAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRG-----IRIYVPQQSIK 58
Query: 209 LTEETQHIVNRQVINAL 225
EE+ V V + +
Sbjct: 59 KFEESGIPVAGTVEDLI 75
>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId:
10665]}
Length = 107
Score = 25.2 bits (55), Expect = 4.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 266 PDVPEELIGLENVVLLPH 283
PDVPE + ++ LP
Sbjct: 52 PDVPEGFCEVGDLTSLPV 69
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 26.3 bits (57), Expect = 5.1
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 146 FTGKSVGILGMGRIGTAIAKRAEAFDCIIGYNSRTEKPNLNYKYYPNLIDLASNCQI 202
GK++ I G G G +AK G + Y P+ ++ +
Sbjct: 30 LKGKTIAIQGYGNAGYYLAKI---MSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKW 83
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 25.8 bits (55), Expect = 5.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 151 VGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPNLNYKYYPN 192
+GI+G+G++ +AI K + +I S E+ +
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLAL 45
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 25.7 bits (55), Expect = 6.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 151 VGILGMGRIGTAIAKR 166
+ +LG G +G
Sbjct: 3 ITVLGCGALGQLWLTA 18
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 25.3 bits (55), Expect = 8.8
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 149 KSVGILGMGRIGTAIAKRAEAFDCI--IGYNSRTEKPNLNYKYY 190
K+V I G G +G +A D + IG +
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALK 45
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 25.0 bits (54), Expect = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 151 VGILGMGRIGTAIAKRA 167
+GI G GRIG + + A
Sbjct: 3 LGINGFGRIGRLVFRAA 19
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 25.4 bits (54), Expect = 9.5
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 148 GKSVGILGMGRIGTAIAKR-AEAFDCIIGYNSRTEKPN 184
KSV +LG G + ++ + E
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAK 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,064
Number of extensions: 53077
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 69
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)