BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042103
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q058D5|ARLY_BUCCC Argininosuccinate lyase OS=Buchnera aphidicola subsp. Cinara cedri
           (strain Cc) GN=argH PE=3 SV=1
          Length = 460

 Score = 33.9 bits (76), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 18/65 (27%)

Query: 35  NNYAKLLSSQSDAPHCWTSSTL---------QLYGKRNKVPQ---------QRRWKWVCS 76
           NN+ K+LSS S+  H W  +T+         +LY  R++  Q         +R+ K +C 
Sbjct: 71  NNFTKILSSNSEDIHSWLETTVINTIGDLGKKLYTGRSRNDQIATDLKLWCKRKSKKICR 130

Query: 77  RVLRL 81
           R+++L
Sbjct: 131 RIIQL 135


>sp|Q2V573|LONP2_PICAN Lon protease homolog 2, peroxisomal OS=Pichia angusta GN=PLN PE=3
           SV=1
          Length = 935

 Score = 33.1 bits (74), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 135 ALGGMALANHIADYLGSGGVHPEELAVGLYNDFQPLEGHD---TGQFPGFGVHGKRGSSS 191
            +G  +LA  IA  LG      + ++VG  NDF  L+GH     G  PG  V   R S S
Sbjct: 455 GVGKTSLARSIATTLGR---KFQRISVGGLNDFADLKGHRRTYVGAIPGLIVQALRRSQS 511

Query: 192 ISTYLL 197
           ++  +L
Sbjct: 512 MNPVIL 517


>sp|Q05C16|LRC63_HUMAN Leucine-rich repeat-containing protein 63 OS=Homo sapiens GN=LRRC63
           PE=2 SV=2
          Length = 580

 Score = 32.0 bits (71), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 9/61 (14%)

Query: 48  PHCWTSSTLQLYGKR-NKVPQQRRWKWVCSRVLRLYLAYQKVHFRSLFILGSNYALPTNT 106
           PHC ++ST +++GK+ NK+   R++K +          Y +    ++ IL S ++ P +T
Sbjct: 111 PHCNSAST-RIFGKQTNKMESSRKFKTMKD-------VYTEKRLENILILSSKFSKPKST 162

Query: 107 P 107
           P
Sbjct: 163 P 163


>sp|Q9BPQ5|PIGM_TRYB2 GPI mannosyltransferase 1 OS=Trypanosoma brucei brucei (strain
           927/4 GUTat10.1) GN=PIGM PE=2 SV=2
          Length = 430

 Score = 30.4 bits (67), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 8   GGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQ 67
           GG P  R    +    A  V    W+AN   KL+ + SD    W       YG      +
Sbjct: 59  GGSPFDRTTFRYTPLLAALVMPSIWIANPMGKLIFASSDLGAAWYC-----YGVLKSFAK 113

Query: 68  QRRWKWVCS 76
           +R  KW+ S
Sbjct: 114 ERSAKWMVS 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,506,280
Number of Sequences: 539616
Number of extensions: 3387080
Number of successful extensions: 6425
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6425
Number of HSP's gapped (non-prelim): 7
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)