Query 042103
Match_columns 199
No_of_seqs 143 out of 251
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 2.1E-33 4.5E-38 248.9 8.4 132 6-149 190-331 (331)
2 TIGR00562 proto_IX_ox protopor 99.3 3.5E-11 7.6E-16 109.4 11.3 143 2-150 301-461 (462)
3 TIGR03467 HpnE squalene-associ 99.0 2.8E-09 6.1E-14 94.2 11.7 133 1-146 273-418 (419)
4 PLN02576 protoporphyrinogen ox 99.0 2.6E-09 5.7E-14 98.5 11.0 144 3-152 320-490 (496)
5 PRK11883 protoporphyrinogen ox 98.8 4.8E-08 1E-12 88.0 12.0 141 1-147 294-450 (451)
6 PRK12416 protoporphyrinogen ox 98.6 4E-07 8.6E-12 83.5 10.7 62 86-149 392-461 (463)
7 PLN02268 probable polyamine ox 98.3 4E-06 8.7E-11 76.2 10.4 138 1-149 277-434 (435)
8 PLN02328 lysine-specific histo 98.2 1.1E-05 2.4E-10 81.0 10.9 145 1-155 512-685 (808)
9 PLN02529 lysine-specific histo 98.1 2.1E-05 4.6E-10 78.3 9.8 144 1-153 432-602 (738)
10 PF01593 Amino_oxidase: Flavin 98.0 2.2E-05 4.8E-10 67.5 8.0 138 3-146 290-450 (450)
11 PRK07233 hypothetical protein; 97.9 0.00013 2.8E-09 65.2 11.4 62 87-150 364-432 (434)
12 PLN02612 phytoene desaturase 97.1 0.0038 8.3E-08 60.1 10.5 37 115-151 511-550 (567)
13 TIGR02732 zeta_caro_desat caro 97.0 0.0021 4.5E-08 60.4 6.9 71 74-146 391-474 (474)
14 PLN02676 polyamine oxidase 96.5 0.033 7.1E-07 52.8 11.1 141 1-152 311-476 (487)
15 PLN03000 amine oxidase 96.1 0.083 1.8E-06 54.2 12.7 145 1-155 456-629 (881)
16 TIGR02731 phytoene_desat phyto 96.1 0.076 1.7E-06 48.7 11.0 51 93-145 395-452 (453)
17 PLN02976 amine oxidase 95.8 0.14 3E-06 55.4 13.0 146 1-154 1022-1191(1713)
18 PLN02568 polyamine oxidase 95.0 0.5 1.1E-05 45.6 12.8 33 118-150 501-536 (539)
19 COG1231 Monoamine oxidase [Ami 94.7 0.32 7E-06 46.5 10.3 144 1-151 285-449 (450)
20 PLN02487 zeta-carotene desatur 94.3 0.14 3.1E-06 49.8 7.4 33 117-149 518-553 (569)
21 PRK07208 hypothetical protein; 87.5 0.78 1.7E-05 42.3 4.3 60 87-148 392-460 (479)
22 TIGR02734 crtI_fam phytoene de 85.6 1.5 3.2E-05 40.9 5.1 36 117-152 459-495 (502)
23 COG1232 HemY Protoporphyrinoge 82.3 9.9 0.00022 36.4 9.2 133 6-146 292-443 (444)
24 TIGR02730 carot_isom carotene 79.9 2.4 5.3E-05 39.7 4.2 33 116-148 458-491 (493)
25 TIGR02733 desat_CrtD C-3',4' d 78.8 2.7 5.9E-05 39.1 4.2 32 116-147 458-490 (492)
26 KOG1276 Protoporphyrinogen oxi 56.0 76 0.0016 31.0 8.6 98 45-146 379-490 (491)
27 TIGR03862 flavo_PP4765 unchara 48.6 23 0.0005 33.1 3.9 34 116-149 336-375 (376)
28 PRK13984 putative oxidoreducta 42.5 31 0.00068 33.3 3.9 34 117-150 569-602 (604)
29 KOG0029 Amine oxidase [Seconda 42.3 29 0.00062 33.6 3.6 67 85-151 382-461 (501)
30 TIGR01316 gltA glutamate synth 40.9 36 0.00078 31.7 4.0 33 117-149 416-449 (449)
31 COG2081 Predicted flavoprotein 39.9 31 0.00068 32.9 3.4 33 117-149 369-407 (408)
32 PRK10015 oxidoreductase; Provi 39.8 52 0.0011 30.5 4.8 37 116-152 294-338 (429)
33 PRK12770 putative glutamate sy 38.7 47 0.001 29.6 4.2 34 117-150 316-350 (352)
34 PRK10157 putative oxidoreducta 38.5 57 0.0012 30.2 4.8 37 116-152 294-338 (428)
35 PRK12810 gltD glutamate syntha 35.3 65 0.0014 30.2 4.8 34 117-150 431-465 (471)
36 TIGR02028 ChlP geranylgeranyl 35.0 84 0.0018 28.7 5.3 37 117-153 270-312 (398)
37 PRK11749 dihydropyrimidine deh 34.6 51 0.0011 30.6 3.9 34 117-150 418-452 (457)
38 KOG0685 Flavin-containing amin 33.6 1E+02 0.0022 30.3 5.8 38 116-153 455-495 (498)
39 TIGR01317 GOGAT_sm_gam glutama 33.4 79 0.0017 29.9 5.0 35 117-151 445-480 (485)
40 PRK12769 putative oxidoreducta 32.4 64 0.0014 31.7 4.3 34 117-150 618-652 (654)
41 COG3349 Uncharacterized conser 31.9 41 0.00089 32.8 2.9 37 116-152 427-466 (485)
42 PRK12775 putative trifunctiona 30.6 86 0.0019 32.9 5.1 36 117-152 721-757 (1006)
43 TIGR01372 soxA sarcosine oxida 29.5 1.1E+02 0.0023 31.9 5.6 35 117-151 439-473 (985)
44 TIGR01318 gltD_gamma_fam gluta 28.5 90 0.0019 29.4 4.5 34 117-150 432-466 (467)
45 COG0644 FixC Dehydrogenases (f 28.5 1E+02 0.0023 28.0 4.8 37 116-152 268-310 (396)
46 PLN00093 geranylgeranyl diphos 28.4 1.1E+02 0.0024 28.8 5.0 37 116-152 308-350 (450)
47 PRK12831 putative oxidoreducta 27.6 88 0.0019 29.5 4.2 34 117-150 427-461 (464)
48 TIGR01292 TRX_reduct thioredox 26.8 69 0.0015 26.8 3.1 33 117-149 266-300 (300)
49 PTZ00318 NADH dehydrogenase-li 26.2 1.2E+02 0.0025 28.0 4.7 34 117-150 309-348 (424)
50 KOG0086 GTPase Rab4, small G p 25.3 87 0.0019 26.9 3.4 37 125-164 153-189 (214)
51 TIGR02023 BchP-ChlP geranylger 25.3 1.4E+02 0.003 26.9 5.0 36 116-151 263-304 (388)
52 PRK12809 putative oxidoreducta 24.2 1E+02 0.0022 30.3 4.2 34 117-150 601-635 (639)
53 KOG0875 60S ribosomal protein 24.1 1.1E+02 0.0023 27.8 3.8 22 129-150 93-114 (264)
54 PRK12778 putative bifunctional 22.8 1.1E+02 0.0025 30.5 4.2 34 117-150 716-750 (752)
55 PRK12814 putative NADPH-depend 22.3 1.5E+02 0.0032 29.3 4.9 35 117-151 467-502 (652)
56 PRK12779 putative bifunctional 20.8 1.3E+02 0.0028 31.5 4.3 34 117-150 593-627 (944)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=248.89 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=115.9
Q ss_pred eeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHhc-
Q 042103 6 CIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLA- 84 (199)
Q Consensus 6 ~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL~- 84 (199)
+.++.|+++++.|++|.|+.++ +|.|+++|.+|+| +.+..+.||+|++|+||++|+ +. +.|++...|-.
T Consensus 190 s~~lg~~q~l~~P~~G~~vdg~-~laWla~d~sK~g--~~p~~~~~vvqasp~wSr~h~---~~----~~e~~i~~l~aA 259 (331)
T COG3380 190 SAVLGYPQPLDRPWPGNFVDGH-PLAWLARDASKKG--HVPDGEIWVVQASPDWSREHL---DH----PAEQVIVALRAA 259 (331)
T ss_pred HHHhcCCccCCCCCCCcccCCC-eeeeeeccccCCC--CCCcCceEEEEeCchHHHHhh---cC----CHHHHHHHHHHh
Confidence 5678999999999999998777 5999999999998 355677999999999999999 32 34455433332
Q ss_pred --------cCccCeEEeecccccCcccCCCCCCCeee-ecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 85 --------YQKVHFRSLFILGSNYALPTNTPSVPCIF-VPQGRASICGGWLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 85 --------l~~p~~~~aHRWr~~yA~p~~~~~~~~l~-d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
++.|.++.+|||| ||+|.+..+.+|++ |.+.+|++|||||.|+|||+|+|||+++|++|+++|
T Consensus 260 ~~~~~~~~~~~p~~s~~H~Wr--YA~P~~~~~~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 260 AQELDGDRLPEPDWSDAHRWR--YAIPNDAVAGPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hhhccCCCCCcchHHHhhccc--cccccccccCCccccCCCCceeeecccccCcchhHHHhccHHHHHHHHhcC
Confidence 6789999999999 99999999999999 999999999999999999999999999999999865
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.27 E-value=3.5e-11 Score=109.36 Aligned_cols=143 Identities=10% Similarity=-0.020 Sum_probs=95.3
Q ss_pred CCcceeecCCCCCC-CCCcce--eEeCCC---CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhH
Q 042103 2 GPSCCIGGPPPTRQ-CINFEG--AFATGV---DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVC 75 (199)
Q Consensus 2 ~~~~~~~~~f~~~l-~~~~dg--a~v~~~---~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~ 75 (199)
+|..++++.|+++. ..+.++ ..+... ..+.|+.+++.+|++. .++...++++.+..++.++. +..+++..
T Consensus 301 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~~---~~~~ee~~ 376 (462)
T TIGR00562 301 PPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRA-PPGKTLLTAYIGGATDESIV---DLSENEII 376 (462)
T ss_pred CceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcC-CCCcEEEEEEeCCCCCcccc---CCCHHHHH
Confidence 45566788887652 222333 333222 4589999888888621 12344677888777666654 21112233
Q ss_pred HHHHHHHhc---cC-ccCeEEeecccccCcccCCCCCC--------CeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHH
Q 042103 76 SRVLRLYLA---YQ-KVHFRSLFILGSNYALPTNTPSV--------PCIFVPQGRASICGGWLLAASVESAALGGMALAN 143 (199)
Q Consensus 76 e~V~~~LL~---l~-~p~~~~aHRWr~~yA~p~~~~~~--------~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~ 143 (199)
+.+.++|-. ++ .|.+.++|||+ ||+|.-.++. +++.....+|.+||||+.|.+||+|+.||+.+|+
T Consensus 377 ~~v~~~L~~~~gi~~~p~~~~v~rw~--~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~ 454 (462)
T TIGR00562 377 NIVLRDLKKVLNINNEPEMLCVTRWH--RAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAAS 454 (462)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeEcc--ccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHH
Confidence 444444333 44 48899999999 9999877663 1222334589999999999999999999999999
Q ss_pred HHHHHhc
Q 042103 144 HIADYLG 150 (199)
Q Consensus 144 ~l~~~l~ 150 (199)
+|++.+-
T Consensus 455 ~~~~~~~ 461 (462)
T TIGR00562 455 DVLTFLF 461 (462)
T ss_pred HHHHhhc
Confidence 9998863
No 3
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.03 E-value=2.8e-09 Score=94.23 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=83.6
Q ss_pred CCCcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHH
Q 042103 1 MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLR 80 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~ 80 (199)
+++.+++++.|+++.+.+.+..-+.+. .+.|+.+++.|++ .....+++++...++.+ +.+ | +..+.+.+
T Consensus 273 ~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~-e----~~~~~~l~ 341 (419)
T TIGR03467 273 YSPITTVHLRLDRAVRLPAPMVGLVGG-LAQWLFDRGQLAG---EPGYLAVVISAARDLVD--LPR-E----ELADRIVA 341 (419)
T ss_pred CcceEEEEEEeCCCcCCCCCeeeecCC-ceeEEEECCcCCC---CCCEEEEEEecchhhcc--CCH-H----HHHHHHHH
Confidence 456678899999998655554434444 5899999888875 44455667776444321 111 1 22333333
Q ss_pred HHhc----c--CccCeEEeec---ccccCcccCCCC-CCCeeeecCCCeEEEeCCCCCC---chHHHHHHHHHHHHHHH
Q 042103 81 LYLA----Y--QKVHFRSLFI---LGSNYALPTNTP-SVPCIFVPQGRASICGGWLLAA---SVESAALGGMALANHIA 146 (199)
Q Consensus 81 ~LL~----l--~~p~~~~aHR---Wr~~yA~p~~~~-~~~~l~d~~~~Lg~CGDW~~G~---rVE~A~lSG~aLA~~l~ 146 (199)
.|-. . ..|.+..+.+ |. |+.+.... -.+++.++..+|.+||||+.++ .||+|++||..+|++|+
T Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 342 ELRRAFPRVAGAKPLWARVIKEKRAT--FAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred HHHHhcCccccCCccceEEEEccCCc--cccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 3322 1 2355544444 45 55432211 1455667778999999999874 99999999999999986
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=99.00 E-value=2.6e-09 Score=98.47 Aligned_cols=144 Identities=12% Similarity=0.014 Sum_probs=90.5
Q ss_pred CcceeecCCCCCCCC-------CcceeEe-----CCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCccccc
Q 042103 3 PSCCIGGPPPTRQCI-------NFEGAFA-----TGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRR 70 (199)
Q Consensus 3 ~~~~~~~~f~~~l~~-------~~dga~v-----~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~ 70 (199)
|..+|++.|+++.+. ++++... .+...+.|+.++..+|++.. ++...++++...+.+.++.. ..
T Consensus 320 ~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~-~~~~~l~~~~~~~~~~~~~~---~s 395 (496)
T PLN02576 320 PVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAP-EGRVLLLNYIGGSRNTGIAS---AS 395 (496)
T ss_pred ceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCC-CCCEEEEEEECCCCCccccc---CC
Confidence 445678888775322 3334321 12235789998888886221 22234555655555444431 11
Q ss_pred chhhHHHHHHHH---hcc---CccCeEEeecccccCcccCCCCCCCee-------eecC--CCeEEEeCCCCCCchHHHH
Q 042103 71 WKWVCSRVLRLY---LAY---QKVHFRSLFILGSNYALPTNTPSVPCI-------FVPQ--GRASICGGWLLAASVESAA 135 (199)
Q Consensus 71 ~~~~~e~V~~~L---L~l---~~p~~~~aHRWr~~yA~p~~~~~~~~l-------~d~~--~~Lg~CGDW~~G~rVE~A~ 135 (199)
+++..+.+.++| +.. +.|....+|+|+ +|.|.-..+.... .+.. .+|.+||||+.|.+||+|+
T Consensus 396 ~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~--~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai 473 (496)
T PLN02576 396 EEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWP--KAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCV 473 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcC--cccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHH
Confidence 112333333333 221 257788899999 9999777653211 1333 5999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 042103 136 LGGMALANHIADYLGSG 152 (199)
Q Consensus 136 lSG~aLA~~l~~~l~~~ 152 (199)
.||..+|++|++.+.++
T Consensus 474 ~sg~~aA~~i~~~~~~~ 490 (496)
T PLN02576 474 ESGYEAADLVISYLESS 490 (496)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999987654
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.82 E-value=4.8e-08 Score=87.96 Aligned_cols=141 Identities=9% Similarity=-0.056 Sum_probs=89.4
Q ss_pred CCCcceeecCCCCCC-C-CCcceeEeC-C-CCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103 1 MGPSCCIGGPPPTRQ-C-INFEGAFAT-G-VDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS 76 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l-~-~~~dga~v~-~-~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e 76 (199)
|++..++.+.|+++. . .+..++++. + ...+.++..++.|... ..+....++.+....|+.+.+. +..+++..+
T Consensus 294 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~p~g~~~~~~~~~~~~~~~~~--~~~~~~~~~ 370 (451)
T PRK11883 294 STSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPH-TTPEGKVLLRLYVGRPGDEAVV--DATDEELVA 370 (451)
T ss_pred CCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCC-CCCCCcEEEEEecCCCCCchhc--cCCHHHHHH
Confidence 466778899998874 2 233456554 2 2236777777777431 1223346787888777654431 111112233
Q ss_pred HHHHHHhc---c-CccCeEEeecccccCcccCCCCCCC--------eeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHH
Q 042103 77 RVLRLYLA---Y-QKVHFRSLFILGSNYALPTNTPSVP--------CIFVPQGRASICGGWLLAASVESAALGGMALANH 144 (199)
Q Consensus 77 ~V~~~LL~---l-~~p~~~~aHRWr~~yA~p~~~~~~~--------~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~ 144 (199)
.+.++|-+ + ..|.+..++||+ ||+|.-.++.. .+-. -.+|.++|||+.+..||+|++||+.+|++
T Consensus 371 ~~~~~L~~~~g~~~~~~~~~~~rw~--~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g~~i~~av~sg~~~a~~ 447 (451)
T PRK11883 371 FVLADLSKVMGITGDPEFTIVQRWK--EAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEGVGLPDCIAQAKRAAAR 447 (451)
T ss_pred HHHHHHHHHhCCCCCceEEEEeecC--ccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCCccHHHHHHHHHHHHHH
Confidence 33333322 2 357789999999 99987655421 1111 24899999999999999999999999999
Q ss_pred HHH
Q 042103 145 IAD 147 (199)
Q Consensus 145 l~~ 147 (199)
|++
T Consensus 448 i~~ 450 (451)
T PRK11883 448 LLA 450 (451)
T ss_pred HHh
Confidence 975
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.58 E-value=4e-07 Score=83.53 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=52.5
Q ss_pred CccCeEEeecccccCcccCCCCCC--------CeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 86 QKVHFRSLFILGSNYALPTNTPSV--------PCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 86 ~~p~~~~aHRWr~~yA~p~~~~~~--------~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
.+|.+..++||+ ++.|....+. ..+-++..+|.+||||+.|..||+|+.||..+|++|++.+
T Consensus 392 ~~p~~~~v~~W~--~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 392 GEPEVVEVTNWK--DLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred CCceEEEEEEcc--ccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHHHHh
Confidence 378899999999 9999876552 2344445799999999999999999999999999999875
No 7
>PLN02268 probable polyamine oxidase
Probab=98.33 E-value=4e-06 Score=76.23 Aligned_cols=138 Identities=14% Similarity=-0.006 Sum_probs=84.0
Q ss_pred CCCcceeecCCCCCCCCC--cceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103 1 MGPSCCIGGPPPTRQCIN--FEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV 78 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~--~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V 78 (199)
||+.+.+.+.|+++.+.. +-|..+.......|..+...+. +...++.+...+++++.. +..+++..+.|
T Consensus 277 ~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~------g~~~l~~~~~g~~a~~~~---~~~~~e~~~~v 347 (435)
T PLN02268 277 VGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKAT------GHPVLVYMPAGRLARDIE---KLSDEAAANFA 347 (435)
T ss_pred ccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCC------CCCEEEEEeccHHHHHHH---hCCHHHHHHHH
Confidence 577888999999886543 2232222222345655443222 234678888888877653 11111223333
Q ss_pred HHHHhc----cCccCeEEeeccccc------CcccCCCCCC-----CeeeecCCCeEEEeCCCCC---CchHHHHHHHHH
Q 042103 79 LRLYLA----YQKVHFRSLFILGSN------YALPTNTPSV-----PCIFVPQGRASICGGWLLA---ASVESAALGGMA 140 (199)
Q Consensus 79 ~~~LL~----l~~p~~~~aHRWr~~------yA~p~~~~~~-----~~l~d~~~~Lg~CGDW~~G---~rVE~A~lSG~a 140 (199)
.++|-. ...|....+|+|.++ |+.+ .++. +.+..+..+|.+||+++.. +.||||+.||+.
T Consensus 348 ~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~--~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~r 425 (435)
T PLN02268 348 MSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYD--LVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVM 425 (435)
T ss_pred HHHHHHHcCCCCCccEEEecccCCCCCCCccCCCC--CCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHH
Confidence 333333 336788889999732 2222 1221 1234556789999999865 689999999999
Q ss_pred HHHHHHHHh
Q 042103 141 LANHIADYL 149 (199)
Q Consensus 141 LA~~l~~~l 149 (199)
+|++|++.|
T Consensus 426 aA~~v~~~l 434 (435)
T PLN02268 426 AAEECRMRL 434 (435)
T ss_pred HHHHHHHhh
Confidence 999998765
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.19 E-value=1.1e-05 Score=81.03 Aligned_cols=145 Identities=13% Similarity=0.019 Sum_probs=87.9
Q ss_pred CCCcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCC-------CCCCCCcEEEEEeChHHHhhcCCcccccchh
Q 042103 1 MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLS-------SQSDAPHCWTSSTLQLYGKRNKVPQQRRWKW 73 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~-------~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~ 73 (199)
||+.+.|++.|+++.+-. +.+.+.++..+.+++|+ ....+...++.+...+++.+... ..+++
T Consensus 512 yG~~~KV~L~F~~~FW~~-------~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~---lsdeE 581 (808)
T PLN02328 512 YGLLNKVALLFPYNFWGG-------EIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFET---LSPVE 581 (808)
T ss_pred CcceEEEEEEeCCccccC-------CCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhc---CCHHH
Confidence 578888999999886531 11124444444444331 00123468899999999887641 11111
Q ss_pred hHHHHHHH---Hhc-----cCccCeEEeeccccc------CcccCCC-CC--CCeeeec--CCCeEEEeCCCCC---Cch
Q 042103 74 VCSRVLRL---YLA-----YQKVHFRSLFILGSN------YALPTNT-PS--VPCIFVP--QGRASICGGWLLA---ASV 131 (199)
Q Consensus 74 ~~e~V~~~---LL~-----l~~p~~~~aHRWr~~------yA~p~~~-~~--~~~l~d~--~~~Lg~CGDW~~G---~rV 131 (199)
..+.+.+. ++. .+.|....+|||+++ |+.+... .+ ...+..+ +.+|.+||+++.. +.|
T Consensus 582 ~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtV 661 (808)
T PLN02328 582 SVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATM 661 (808)
T ss_pred HHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEh
Confidence 23333333 222 236778899999822 3332211 11 1233333 4699999999874 589
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 042103 132 ESAALGGMALANHIADYLGSGGVH 155 (199)
Q Consensus 132 E~A~lSG~aLA~~l~~~l~~~~~~ 155 (199)
|||++||+.+|++|++.+.+....
T Consensus 662 hGAi~SGlRAA~eIl~~~~~~~~~ 685 (808)
T PLN02328 662 HGAFLSGMREAANILRVARRRSLC 685 (808)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999988666444
No 9
>PLN02529 lysine-specific histone demethylase 1
Probab=98.06 E-value=2.1e-05 Score=78.34 Aligned_cols=144 Identities=15% Similarity=0.047 Sum_probs=83.4
Q ss_pred CCCcceeecCCCCCCCCC---cceeEeC---CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhh
Q 042103 1 MGPSCCIGGPPPTRQCIN---FEGAFAT---GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWV 74 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~---~dga~v~---~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~ 74 (199)
||+...|.+.|+++.+.. +-|.... +...+.+. .+..+. .+..+++.+...+++.+... ..+++.
T Consensus 432 yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~-~~~~~~-----~ggpvLvafv~G~~A~~le~---lsdeei 502 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLF-YGYHTV-----SGGPALVALVAGEAAQRFEN---TDPSTL 502 (738)
T ss_pred CceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEE-ecCCCC-----CCCCEEEEEECchhhHHHhc---CCHHHH
Confidence 578888999999885522 1122111 11111111 122222 12357888988888876531 111112
Q ss_pred HHHHHHH---Hhc-----cCccCeEEeeccccc------CcccCCC-CC--CCeeeec-CCCeEEEeCCCCC---CchHH
Q 042103 75 CSRVLRL---YLA-----YQKVHFRSLFILGSN------YALPTNT-PS--VPCIFVP-QGRASICGGWLLA---ASVES 133 (199)
Q Consensus 75 ~e~V~~~---LL~-----l~~p~~~~aHRWr~~------yA~p~~~-~~--~~~l~d~-~~~Lg~CGDW~~G---~rVE~ 133 (199)
.+.+.+. ++. ++.|.....|+|.++ |+.+... .+ ...+..+ ..+|.+|||++.. +.|||
T Consensus 503 i~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeG 582 (738)
T PLN02529 503 LHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHG 582 (738)
T ss_pred HHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHH
Confidence 3333333 221 346777889999831 3443211 11 1133333 4799999999865 58999
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 042103 134 AALGGMALANHIADYLGSGG 153 (199)
Q Consensus 134 A~lSG~aLA~~l~~~l~~~~ 153 (199)
|++||+.+|++|++.+.+..
T Consensus 583 Ai~SG~RAA~eIl~~l~~~~ 602 (738)
T PLN02529 583 AFLSGLREASRILHVARSQQ 602 (738)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999886654
No 10
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.02 E-value=2.2e-05 Score=67.48 Aligned_cols=138 Identities=13% Similarity=0.011 Sum_probs=80.9
Q ss_pred CcceeecCCCCCCCCC---cceeEeCCC-CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103 3 PSCCIGGPPPTRQCIN---FEGAFATGV-DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV 78 (199)
Q Consensus 3 ~~~~~~~~f~~~l~~~---~dga~v~~~-~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V 78 (199)
+.+.|.+.|+++.+.. +.+..+.+. ..+.++...+.+++ +.+...++.-....++.+... ..+++..+.+
T Consensus 290 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~---~~~e~~~~~~ 363 (450)
T PF01593_consen 290 SVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPG---RPGGGVLTSYVGGPDAPEWDD---LSDEEILERV 363 (450)
T ss_dssp EEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTS---CTTSEEEEEEEEHHHHHHHTT---SCHHHHHHHH
T ss_pred cceeEEEeeecccccccccccceecccCccccccccccccCcc---cccCCcceeeeeccccchhcc---cchhhhHHHH
Confidence 3467788888887654 455555544 45888888888886 233444555555555433321 1111233444
Q ss_pred HHHHhc------cCccCeEEeecccc-cCcccCCC---CCCC-----eeeecC-CCeEEEeCCCCCC---chHHHHHHHH
Q 042103 79 LRLYLA------YQKVHFRSLFILGS-NYALPTNT---PSVP-----CIFVPQ-GRASICGGWLLAA---SVESAALGGM 139 (199)
Q Consensus 79 ~~~LL~------l~~p~~~~aHRWr~-~yA~p~~~---~~~~-----~l~d~~-~~Lg~CGDW~~G~---rVE~A~lSG~ 139 (199)
.+.|-. .+.|....+++|.. .|++..-. .+.. .+..+- .+|.+||||+.++ .+|+|++||.
T Consensus 364 ~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~ 443 (450)
T PF01593_consen 364 LDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGR 443 (450)
T ss_dssp HHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHH
Confidence 444333 33566667889983 12222111 1111 122333 5999999999865 9999999999
Q ss_pred HHHHHHH
Q 042103 140 ALANHIA 146 (199)
Q Consensus 140 aLA~~l~ 146 (199)
.+|++|+
T Consensus 444 ~aA~~il 450 (450)
T PF01593_consen 444 RAAEEIL 450 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 11
>PRK07233 hypothetical protein; Provisional
Probab=97.92 E-value=0.00013 Score=65.20 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=48.0
Q ss_pred ccCeEEeecccccCcccCCCCC----CCeeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhc
Q 042103 87 KVHFRSLFILGSNYALPTNTPS----VPCIFVPQGRASICGGWLL---AASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 87 ~p~~~~aHRWr~~yA~p~~~~~----~~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+....++||+ ||.|...++ .+.+-.+..+|.+|||+.. +..+|+|+.||..+|++|++.+.
T Consensus 364 ~~~~~~~~r~~--~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 364 DVRAVRISRAP--YAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred heeeEEEEEec--cccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 35778899999 999876544 2334445578999999743 34899999999999999988763
No 12
>PLN02612 phytoene desaturase
Probab=97.12 E-value=0.0038 Score=60.09 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=32.0
Q ss_pred cCCCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHhcC
Q 042103 115 PQGRASICGGWLLA---ASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 115 ~~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
+-.+|.+||||+.. +.+|+|++||..+|+.|++.+..
T Consensus 511 Pi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 511 PIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred ccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 34589999999864 68999999999999999988754
No 13
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.95 E-value=0.0021 Score=60.37 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=45.6
Q ss_pred hHHHHHHHHhc-cC-----ccCeEEeecccccCcccCCCCCC----CeeeecCCCeEEEeCCCCC---CchHHHHHHHHH
Q 042103 74 VCSRVLRLYLA-YQ-----KVHFRSLFILGSNYALPTNTPSV----PCIFVPQGRASICGGWLLA---ASVESAALGGMA 140 (199)
Q Consensus 74 ~~e~V~~~LL~-l~-----~p~~~~aHRWr~~yA~p~~~~~~----~~l~d~~~~Lg~CGDW~~G---~rVE~A~lSG~a 140 (199)
..+++.++|-. .+ ++...++-|.. .|.+...+|. |-...+-.+|.+||||... ..+|+|+.||..
T Consensus 391 l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~--~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~ 468 (474)
T TIGR02732 391 IAKRVDKQVRALFPSSKNLKLTWSSVVKLA--QSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQ 468 (474)
T ss_pred HHHHHHHHHHHhCccccCCceeEEEEEEec--CceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHH
Confidence 45556555544 21 23444455555 5555433332 2223334589999999987 899999999999
Q ss_pred HHHHHH
Q 042103 141 LANHIA 146 (199)
Q Consensus 141 LA~~l~ 146 (199)
+|++|+
T Consensus 469 aA~~i~ 474 (474)
T TIGR02732 469 AAAAIL 474 (474)
T ss_pred HHHHhC
Confidence 999873
No 14
>PLN02676 polyamine oxidase
Probab=96.47 E-value=0.033 Score=52.77 Aligned_cols=141 Identities=14% Similarity=0.013 Sum_probs=78.2
Q ss_pred CCCcceeecCCCCCCCCC-cce-eE-eCCCC---cEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCcccccch
Q 042103 1 MGPSCCIGGPPPTRQCIN-FEG-AF-ATGVD---SVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRRWK 72 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~-~dg-a~-v~~~~---~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~~~ 72 (199)
||...-|.+.|++|.+.. ... .+ ..+.+ ...|..-+.+.++ ..+.+...+.+-+++- +.+ |
T Consensus 311 ~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~g~~a~~~~~~s~-e---- 379 (487)
T PLN02676 311 MAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPG------SNVLFVTVTDEESRRIEQQPD-S---- 379 (487)
T ss_pred ceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCC------CCEEEEEechHHHHHHHhCCH-H----
Confidence 577788889999887643 111 11 11110 0223332333332 2366677666665542 212 1
Q ss_pred hhHHHHHHHHhc-----cCccCeEEeeccccc-Ccc---cCCCCCC-----CeeeecCCCeEEEeCCCC---CCchHHHH
Q 042103 73 WVCSRVLRLYLA-----YQKVHFRSLFILGSN-YAL---PTNTPSV-----PCIFVPQGRASICGGWLL---AASVESAA 135 (199)
Q Consensus 73 ~~~e~V~~~LL~-----l~~p~~~~aHRWr~~-yA~---p~~~~~~-----~~l~d~~~~Lg~CGDW~~---G~rVE~A~ 135 (199)
+..+.+.+.|-. ++.|.....|.|.++ |+. ..-+++. ..+-.|..+|.++|+-+. .+-||||+
T Consensus 380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~ 459 (487)
T PLN02676 380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAY 459 (487)
T ss_pred HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHH
Confidence 123333333332 456777788999621 111 0111121 122345579999999765 37899999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 042103 136 LGGMALANHIADYLGSG 152 (199)
Q Consensus 136 lSG~aLA~~l~~~l~~~ 152 (199)
.||...|++|++.+.+.
T Consensus 460 ~SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 460 LAGIDTANDLLECIKKK 476 (487)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999988653
No 15
>PLN03000 amine oxidase
Probab=96.15 E-value=0.083 Score=54.17 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCCcceeecCCCCCCCCC---cceeEeCCCC--cEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCcccccchh
Q 042103 1 MGPSCCIGGPPPTRQCIN---FEGAFATGVD--SVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRRWKW 73 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~---~dga~v~~~~--~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~~~~ 73 (199)
||...-|.+.|+++-+-. +-|..+.+.. ...++-.+.++.. +....+.....+-+.+- +.++|
T Consensus 456 ~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~-----G~pVLvafv~Gd~A~~le~lSdeE----- 525 (881)
T PLN03000 456 FGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVA-----GGPLLIALVAGEAAHKFETMPPTD----- 525 (881)
T ss_pred CcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCC-----CCcEEEEEecCchhHHhhcCCHHH-----
Confidence 567778899999886532 2233332211 1223334444431 12355555555555432 22211
Q ss_pred hHHHHHHH---Hhc-----cCccCeEEeeccccc-Ccc---cCCCCCC-C----eeeec--CCCeEEEeCCCCC---Cch
Q 042103 74 VCSRVLRL---YLA-----YQKVHFRSLFILGSN-YAL---PTNTPSV-P----CIFVP--QGRASICGGWLLA---ASV 131 (199)
Q Consensus 74 ~~e~V~~~---LL~-----l~~p~~~~aHRWr~~-yA~---p~~~~~~-~----~l~d~--~~~Lg~CGDW~~G---~rV 131 (199)
..+.|.+. ++. ++.|....+++|.+. |++ ..-.++. . .+-.+ +.+|.++|+.+.. +-|
T Consensus 526 ~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTV 605 (881)
T PLN03000 526 AVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATM 605 (881)
T ss_pred HHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeH
Confidence 22333333 332 346788899999832 211 1011121 1 11122 4689999997654 789
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 042103 132 ESAALGGMALANHIADYLGSGGVH 155 (199)
Q Consensus 132 E~A~lSG~aLA~~l~~~l~~~~~~ 155 (199)
|||++||+..|++|++.+.+...+
T Consensus 606 hGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 606 HGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999766555
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.05 E-value=0.076 Score=48.72 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=36.1
Q ss_pred eecccccCcccCCCCCC----CeeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHH
Q 042103 93 LFILGSNYALPTNTPSV----PCIFVPQGRASICGGWLL---AASVESAALGGMALANHI 145 (199)
Q Consensus 93 aHRWr~~yA~p~~~~~~----~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l 145 (199)
..+.. |+.+..+++. +.+..+..+|.++|||.. .+.+|+|+.||..+|+.|
T Consensus 395 ~~~~p--~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 395 VVKTP--RSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred EEECC--CceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 33455 7754333332 344455679999999974 369999999999999987
No 17
>PLN02976 amine oxidase
Probab=95.83 E-value=0.14 Score=55.38 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=78.6
Q ss_pred CCCcceeecCCCCCCCCC---cceeEeCCC--CcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhH
Q 042103 1 MGPSCCIGGPPPTRQCIN---FEGAFATGV--DSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVC 75 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~---~dga~v~~~--~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~ 75 (199)
||...-|.+.|+++.|.. +-|....+. ...-|+.-|..++. +....+.......+.+.. ...+.+..
T Consensus 1022 fG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps-----G~pVLVafv~G~aAreiE---sLSDEE~V 1093 (1713)
T PLN02976 1022 FGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV-----GAPVLIALVVGKAAIDGQ---SMSSSDHV 1093 (1713)
T ss_pred cccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC-----CCCEEEEEeccHhHHHHh---hCCHHHHH
Confidence 566777888898876532 122221111 11224444444432 223455555555554321 11111122
Q ss_pred HHHHH---HHhc---cCccCeEEeeccccc-Cccc---CCCCCC-C----eeeec-CCCeEEEeCCCC---CCchHHHHH
Q 042103 76 SRVLR---LYLA---YQKVHFRSLFILGSN-YALP---TNTPSV-P----CIFVP-QGRASICGGWLL---AASVESAAL 136 (199)
Q Consensus 76 e~V~~---~LL~---l~~p~~~~aHRWr~~-yA~p---~~~~~~-~----~l~d~-~~~Lg~CGDW~~---G~rVE~A~l 136 (199)
+.+.+ .++. ++.|....+++|.++ |++= ..++|. . .+-.| ..+|.++|+.+. .+-||||++
T Consensus 1094 e~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIe 1173 (1713)
T PLN02976 1094 NHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMM 1173 (1713)
T ss_pred HHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHH
Confidence 22222 2332 357888889999743 3221 111121 1 12223 346999998553 378999999
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 042103 137 GGMALANHIADYLGSGGV 154 (199)
Q Consensus 137 SG~aLA~~l~~~l~~~~~ 154 (199)
||...|++|+..+.++.+
T Consensus 1174 SG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1174 SGLREAVRIIDILNTGND 1191 (1713)
T ss_pred HHHHHHHHHHHHHHccCc
Confidence 999999999999987655
No 18
>PLN02568 polyamine oxidase
Probab=94.97 E-value=0.5 Score=45.61 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=27.9
Q ss_pred CeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHhc
Q 042103 118 RASICGGWLLA---ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 118 ~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
+|.++|.-... +-|+||++||+..|++|+++..
T Consensus 501 ~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 501 QLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 79999975543 5699999999999999998764
No 19
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.32 Score=46.55 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=89.1
Q ss_pred CCCcceeecCCCCCCCC--C-cceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHH
Q 042103 1 MGPSCCIGGPPPTRQCI--N-FEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSR 77 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~--~-~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~ 77 (199)
||+.|-+++.|+.|.+- + +-|.-+.|.. +..|..+|+ +. .++. =||+++-.|..+.++=+.-.+.+-.+.
T Consensus 285 y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~---~~G~--gVl~g~~~~g~~A~~~~~~~~~~r~~~ 357 (450)
T COG1231 285 YGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PF---ADGP--GVLLGSYAFGDDALVIDALPEAERRQK 357 (450)
T ss_pred cchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-cc---CCCc--eEEEeeeeccccceeEecCCHHHHHHH
Confidence 67889999999999875 3 5566666765 777777777 54 3333 489998888877652111111112333
Q ss_pred HHHHHhc-cC-----ccCeEEeeccccc------Ccc-cCCC-C-CCCeeeecCCCeEEEe-CCC--CCCchHHHHHHHH
Q 042103 78 VLRLYLA-YQ-----KVHFRSLFILGSN------YAL-PTNT-P-SVPCIFVPQGRASICG-GWL--LAASVESAALGGM 139 (199)
Q Consensus 78 V~~~LL~-l~-----~p~~~~aHRWr~~------yA~-p~~~-~-~~~~l~d~~~~Lg~CG-DW~--~G~rVE~A~lSG~ 139 (199)
|...|-. .+ ...+...++|-+. ++. +... . -.+.+--+..||..+| -+- .++=+|||.+||.
T Consensus 358 vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~ 437 (450)
T COG1231 358 VLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQ 437 (450)
T ss_pred HHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHH
Confidence 3333322 11 2345477888621 111 1111 0 0123335678999999 553 4688999999999
Q ss_pred HHHHHHHHHhcC
Q 042103 140 ALANHIADYLGS 151 (199)
Q Consensus 140 aLA~~l~~~l~~ 151 (199)
.+|.+|...+++
T Consensus 438 ~AA~ei~~~l~s 449 (450)
T COG1231 438 RAAAEIHALLSS 449 (450)
T ss_pred HHHHHHHHhhcC
Confidence 999999998864
No 20
>PLN02487 zeta-carotene desaturase
Probab=94.31 E-value=0.14 Score=49.82 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHh
Q 042103 117 GRASICGGWLLA---ASVESAALGGMALANHIADYL 149 (199)
Q Consensus 117 ~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l 149 (199)
.+|.+||||... ..+|+|++||..+|+.|++.-
T Consensus 518 ~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 518 SNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 589999999853 699999999999999997743
No 21
>PRK07208 hypothetical protein; Provisional
Probab=87.46 E-value=0.78 Score=42.34 Aligned_cols=60 Identities=12% Similarity=-0.007 Sum_probs=44.6
Q ss_pred ccCeEEeecccccCcccCCCCCCCe-------eeecCCCeEEEeCCC--CCCchHHHHHHHHHHHHHHHHH
Q 042103 87 KVHFRSLFILGSNYALPTNTPSVPC-------IFVPQGRASICGGWL--LAASVESAALGGMALANHIADY 148 (199)
Q Consensus 87 ~p~~~~aHRWr~~yA~p~~~~~~~~-------l~d~~~~Lg~CGDW~--~G~rVE~A~lSG~aLA~~l~~~ 148 (199)
.|...+++||. +|.|.-..+-.. +.+...+|.++|+.. .-..+|.|+.||..+|+.|++.
T Consensus 392 ~~~~~~v~r~~--~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 392 DVEDGFVVRVP--KAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred heeEEEEEEec--CcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 36788899999 999966533211 123345899999842 3368999999999999998876
No 22
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=85.57 E-value=1.5 Score=40.91 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=31.7
Q ss_pred CCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 117 GRASICGGWLL-AASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 117 ~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
.+|++||+|+. |+.|-+|.+||+-+|++|++.+..+
T Consensus 459 ~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~ 495 (502)
T TIGR02734 459 DNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPG 495 (502)
T ss_pred CCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 48999999997 5699999999999999999876544
No 23
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=82.32 E-value=9.9 Score=36.36 Aligned_cols=133 Identities=10% Similarity=-0.026 Sum_probs=75.2
Q ss_pred eeecCCCCC---CCCCcceeEeCCCCc-EEEEEecCCCCCCCCCCCCcEEE-EEeCh--HHHhhcCCcccccchhhHHHH
Q 042103 6 CIGGPPPTR---QCINFEGAFATGVDS-VSWMANNYAKLLSSQSDAPHCWT-SSTLQ--LYGKRNKVPQQRRWKWVCSRV 78 (199)
Q Consensus 6 ~~~~~f~~~---l~~~~dga~v~~~~~-LsWiA~nsSKpg~~~~~~~e~WV-lhaTp--~wS~~hl~pqe~~~~~~~e~V 78 (199)
||.++++.+ ...+--|..|.+..+ +.=+.-+|.|-... .+.....+ +-..- +.+.-+..+ ++..+.+
T Consensus 292 ~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~-~p~g~~ll~~~~~~~g~~~~~~~~d-----ee~~~~~ 365 (444)
T COG1232 292 TVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHE-APEGKTLLRVEFGGPGDESVSTMSD-----EELVAAV 365 (444)
T ss_pred EEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCC-CCCCcEEEEEEeecCCCcchhccCH-----HHHHHHH
Confidence 555666654 222344677777665 55555566664311 11122111 11111 111111111 1233444
Q ss_pred HHHHhc----cCccCeEEeecccccCcccCCCCCC-----CeeeecC---CCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103 79 LRLYLA----YQKVHFRSLFILGSNYALPTNTPSV-----PCIFVPQ---GRASICGGWLLAASVESAALGGMALANHIA 146 (199)
Q Consensus 79 ~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~-----~~l~d~~---~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~ 146 (199)
.+.|-. -..|.+..+.||+ ++.|.-..|- +..-... .+|.+.|=|..+..+=+...+|...|++|+
T Consensus 366 l~~L~~~~~~~~~~~~~~v~r~~--~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 366 LDDLKKLGGINGDPVFVEVTRWK--YAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHcCcCcchhheeeeecc--ccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 444444 3368899999999 9999765331 1111112 789999999999999999999999999885
No 24
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=79.90 E-value=2.4 Score=39.68 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHH
Q 042103 116 QGRASICGGWLL-AASVESAALGGMALANHIADY 148 (199)
Q Consensus 116 ~~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~ 148 (199)
-.+|++||||.. |+.|-+|.+||+.+|++|...
T Consensus 458 i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 458 IPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 358999999986 579999999999999999864
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=78.81 E-value=2.7 Score=39.15 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCCeEEEeCCCC-CCchHHHHHHHHHHHHHHHH
Q 042103 116 QGRASICGGWLL-AASVESAALGGMALANHIAD 147 (199)
Q Consensus 116 ~~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~ 147 (199)
-.+|++||+|+. |+.|-+|.+||+.+|++|++
T Consensus 458 i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 458 VKGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 358999999987 46999999999999999975
No 26
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=55.97 E-value=76 Score=30.99 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=63.3
Q ss_pred CCCCcEEEEEeChHHHhhcC---Cc-ccccchhhHHHHHHHHhccC-ccCeEEeecccccCcccCCCCCCC--------e
Q 042103 45 SDAPHCWTSSTLQLYGKRNK---VP-QQRRWKWVCSRVLRLYLAYQ-KVHFRSLFILGSNYALPTNTPSVP--------C 111 (199)
Q Consensus 45 ~~~~e~WVlhaTp~wS~~hl---~p-qe~~~~~~~e~V~~~LL~l~-~p~~~~aHRWr~~yA~p~~~~~~~--------~ 111 (199)
++..+..|+-----|++ |- +| +|.+-+ .+.+-++.||.+. +|.+..+|.|+ -+.|.-..|.- +
T Consensus 379 ~~~s~~vtvm~gg~~~~-n~~~~~~S~ee~~~-~v~~alq~~Lgi~~~P~~~~v~l~~--~ciPqy~vGh~~~le~a~~~ 454 (491)
T KOG1276|consen 379 RSPSPKVTVMMGGGGST-NTSLAVPSPEELVN-AVTSALQKMLGISNKPVSVNVHLWK--NCIPQYTVGHDDVLEAAKSM 454 (491)
T ss_pred CCCCceEEEEecccccc-cCcCCCCCHHHHHH-HHHHHHHHHhCCCCCcccccceehh--hcccceecchHHHHHHHHHH
Confidence 33333566666666666 42 12 121111 1222235566654 69999999999 99987654321 2
Q ss_pred eeec-CCCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103 112 IFVP-QGRASICGGWLLAASVESAALGGMALANHIA 146 (199)
Q Consensus 112 l~d~-~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~ 146 (199)
+-+. ..+|.+||-|..|..|-.-..||...|..++
T Consensus 455 l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 455 LTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HHhCCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence 3332 3689999999999999999999999887764
No 27
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=48.63 E-value=23 Score=33.06 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=29.7
Q ss_pred CCCeEEEeC------CCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 116 QGRASICGG------WLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 116 ~~~Lg~CGD------W~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
-.+|++||- +|+|=...-||-||+.+|+.+..+|
T Consensus 336 ~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 336 RPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 458999993 6788899999999999999998876
No 28
>PRK13984 putative oxidoreductase; Provisional
Probab=42.50 E-value=31 Score=33.29 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=31.2
Q ss_pred CCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+++++||-..++.+-.|.-.|..+|+.|..+|.
T Consensus 569 ~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 569 PWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999998888999999999999999984
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.27 E-value=29 Score=33.61 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=42.8
Q ss_pred cCccCeEEeeccccc------CcccCCC-CCCC--eeeec-CCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 85 YQKVHFRSLFILGSN------YALPTNT-PSVP--CIFVP-QGRASICGGWLL---AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 85 l~~p~~~~aHRWr~~------yA~p~~~-~~~~--~l~d~-~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+.|....+-||.++ |...... .+.. -+-.+ ..++.++|.-.. -+.+||||+||...|..|+..+..
T Consensus 382 ~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 382 VPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 445777788899832 1111111 1111 01112 235999999543 489999999999999999998863
No 30
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=40.90 E-value=36 Score=31.73 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHh
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYL 149 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l 149 (199)
.+|+++||-..|+ .|-.|...|..+|..|..+|
T Consensus 416 ~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 416 PGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 4799999998776 47889999999999998775
No 31
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=39.88 E-value=31 Score=32.91 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCeEEEeC------CCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 117 GRASICGG------WLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 117 ~~Lg~CGD------W~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
.+|++||- |+.|=.+..||-||.++++.+.+++
T Consensus 369 PGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 369 PGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred CCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 47999993 7888899999999999999998865
No 32
>PRK10015 oxidoreductase; Provisional
Probab=39.82 E-value=52 Score=30.55 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=29.7
Q ss_pred CCCeEEEeCC---C-----CCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 116 QGRASICGGW---L-----LAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 116 ~~~Lg~CGDW---~-----~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
..++.++||- + .+..+--|+.||..+|+.|.+.+.++
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~ 338 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERA 338 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcC
Confidence 3589999993 2 34667779999999999999998754
No 33
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=38.71 E-value=47 Score=29.58 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCeEEEeCCCCC-CchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLA-ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G-~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.++.+|||-..+ ..+-.|...|..+|+.|.++|.
T Consensus 316 ~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 316 EGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 479999998764 5788899999999999999884
No 34
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=38.51 E-value=57 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCCeEEEeCC---C-----CCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 116 QGRASICGGW---L-----LAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 116 ~~~Lg~CGDW---~-----~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
..++.++||- + .+..|--|..||..+|+.|.+.+.++
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~ 338 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD 338 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC
Confidence 3589999993 2 35778889999999999999999754
No 35
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=35.31 E-value=65 Score=30.19 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=29.9
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-..++ .+-.|...|..+|..|..+|.
T Consensus 431 ~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 431 PKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4799999988776 478899999999999999995
No 36
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=34.97 E-value=84 Score=28.72 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=31.8
Q ss_pred CCeEEEeCC------CCCCchHHHHHHHHHHHHHHHHHhcCCC
Q 042103 117 GRASICGGW------LLAASVESAALGGMALANHIADYLGSGG 153 (199)
Q Consensus 117 ~~Lg~CGDW------~~G~rVE~A~lSG~aLA~~l~~~l~~~~ 153 (199)
.++.+.||- +.|..|=-|+.||..+|+.|.+.+..+.
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~ 312 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGG 312 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCC
Confidence 579999994 4678999999999999999999886554
No 37
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=34.57 E-value=51 Score=30.61 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCeEEEeCCCCC-CchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLA-ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G-~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+++++||-..+ ..+-.|...|..+|+.|..+|.
T Consensus 418 ~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 418 PGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 479999998876 4688999999999999999985
No 38
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=33.57 E-value=1e+02 Score=30.28 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred CCCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHhcCCC
Q 042103 116 QGRASICGGWLLA---ASVESAALGGMALANHIADYLGSGG 153 (199)
Q Consensus 116 ~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l~~~~ 153 (199)
..+|-++|---.. +-+-||++||+.-|++|+++..++.
T Consensus 455 ~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 455 RPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESST 495 (498)
T ss_pred CceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhhc
Confidence 3467777876543 6799999999999999999765543
No 39
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=33.36 E-value=79 Score=29.94 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|+++||-..|+ -+-.|.-.|..+|..|..+|..
T Consensus 445 ~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 445 PGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999987664 4778999999999999999953
No 40
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=32.42 E-value=64 Score=31.72 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=29.9
Q ss_pred CCeEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAAS-VESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~r-VE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-..|+. |-.|...|..+|+.|.++|.
T Consensus 618 ~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 618 PKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 47999999887754 68899999999999999985
No 41
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=31.90 E-value=41 Score=32.79 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=32.0
Q ss_pred CCCeEEEeCCCCC---CchHHHHHHHHHHHHHHHHHhcCC
Q 042103 116 QGRASICGGWLLA---ASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 116 ~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
-.++.+.|||... +..|+|..||+..|+.|.+.+...
T Consensus 427 v~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 427 IPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHH 466 (485)
T ss_pred ccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhc
Confidence 4579999999864 789999999999999999888644
No 42
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=30.63 E-value=86 Score=32.94 Aligned_cols=36 Identities=28% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCeEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHhcCC
Q 042103 117 GRASICGGWLLAAS-VESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 117 ~~Lg~CGDW~~G~r-VE~A~lSG~aLA~~l~~~l~~~ 152 (199)
.+|+++||-..|+. |-.|.-.|..+|..|..+|...
T Consensus 721 pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 721 PGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999988764 7899999999999999999644
No 43
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=29.53 E-value=1.1e+02 Score=31.92 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=31.5
Q ss_pred CCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLAASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|.+|||-.....++.|..+|..+|.+|+..+..
T Consensus 439 ~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 439 QGCILAGAANGLFGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999887789999999999999999988865
No 44
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=28.54 E-value=90 Score=29.38 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=29.3
Q ss_pred CCeEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAAS-VESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~r-VE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-..++. +-.|...|..+|+.|.++|.
T Consensus 432 ~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 432 PKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 47999999887764 57899999999999999874
No 45
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=28.54 E-value=1e+02 Score=27.96 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=31.4
Q ss_pred CCCeEEEeCCC------CCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 116 QGRASICGGWL------LAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 116 ~~~Lg~CGDW~------~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
..++.+.||-- .|+.+=-|..||+.+|+.|.+.+.+.
T Consensus 268 ~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~ 310 (396)
T COG0644 268 GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG 310 (396)
T ss_pred cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 35799999954 48899999999999999999988654
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=28.43 E-value=1.1e+02 Score=28.85 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCeEEEeCC------CCCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 116 QGRASICGGW------LLAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 116 ~~~Lg~CGDW------~~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
..++.+.||- +.|..|=-|+.||..+|+.|.+.+.++
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g 350 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENG 350 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3479999994 468899999999999999999988654
No 47
>PRK12831 putative oxidoreductase; Provisional
Probab=27.57 E-value=88 Score=29.46 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-..|+ .|-.|.-.|..+|..|..+|.
T Consensus 427 pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 427 EGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999987764 688999999999999999984
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=26.84 E-value=69 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.038 Sum_probs=27.8
Q ss_pred CCeEEEeCCCC--CCchHHHHHHHHHHHHHHHHHh
Q 042103 117 GRASICGGWLL--AASVESAALGGMALANHIADYL 149 (199)
Q Consensus 117 ~~Lg~CGDW~~--G~rVE~A~lSG~aLA~~l~~~l 149 (199)
.+++++||-.. ...+-.|...|..+|..|.++|
T Consensus 266 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 266 PGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 57999999775 4678899999999999998764
No 49
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=26.19 E-value=1.2e+02 Score=27.97 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCeEEEeCCCC------CCchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLL------AASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~------G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+++++||-.. ......|...|..+|+.|...+.
T Consensus 309 ~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 309 PNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 47999999654 34678899999999999999884
No 50
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=87 Score=26.87 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=32.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhcCCCCCchhhhcccC
Q 042103 125 WLLAASVESAALGGMALANHIADYLGSGGVHPEELAVGLY 164 (199)
Q Consensus 125 W~~G~rVE~A~lSG~aLA~~l~~~l~~~~~~~~~~~~gl~ 164 (199)
-..|..||-||++ .++.|+....++.-+||+...|+.
T Consensus 153 a~TGeNVEEaFl~---c~~tIl~kIE~GElDPer~gsGIQ 189 (214)
T KOG0086|consen 153 ALTGENVEEAFLK---CARTILNKIESGELDPERMGSGIQ 189 (214)
T ss_pred ccccccHHHHHHH---HHHHHHHHHhhcCCCHHHcccccc
Confidence 3568999999987 578999999999999999988875
No 51
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=25.26 E-value=1.4e+02 Score=26.87 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCCeEEEeCC------CCCCchHHHHHHHHHHHHHHHHHhcC
Q 042103 116 QGRASICGGW------LLAASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 116 ~~~Lg~CGDW------~~G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
..++.+.||- +.|..|=-|+.||..+|+.|.+.+..
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4579999994 35788999999999999999999864
No 52
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.16 E-value=1e+02 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=29.7
Q ss_pred CCeEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAAS-VESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~r-VE~A~lSG~aLA~~l~~~l~ 150 (199)
.+++++||-..|+. |-.|...|..+|+.|..+|.
T Consensus 601 ~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 601 KKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred CCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999887764 68899999999999999984
No 53
>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=1.1e+02 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 042103 129 ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 129 ~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
-.=-+||--|+.||++++..|.
T Consensus 93 tNyaAay~TglLLarR~l~~~g 114 (264)
T KOG0875|consen 93 TNYAAAYCTGLLLACRLLKRFG 114 (264)
T ss_pred chhHHHHhhHHHHHHHHHHHhC
Confidence 3456899999999999999886
No 54
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.84 E-value=1.1e+02 Score=30.53 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-..|+ .|-.|...|..+|..|.++|.
T Consensus 716 ~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 716 PGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999988765 588999999999999999984
No 55
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=22.31 E-value=1.5e+02 Score=29.34 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=30.1
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|+++||-..++ .+-.|...|..+|..|..+|..
T Consensus 467 pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 467 AGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4799999988765 4678999999999999999963
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.76 E-value=1.3e+02 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.054 Sum_probs=30.3
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|.++||-..|+ .|=.|.-.|..+|+.|..+|.
T Consensus 593 pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 593 KGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999988776 588899999999999999985
Done!