Query 042103
Match_columns 199
No_of_seqs 143 out of 251
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 99.9 3.9E-23 1.3E-27 177.6 12.7 144 1-149 190-342 (342)
2 1yvv_A Amine oxidase, flavin-c 99.8 6.7E-19 2.3E-23 148.8 13.4 140 3-151 184-329 (336)
3 3kkj_A Amine oxidase, flavin-c 99.6 1.2E-13 4E-18 105.4 14.4 116 30-152 210-330 (336)
4 3nks_A Protoporphyrinogen oxid 99.1 5E-11 1.7E-15 105.8 5.9 144 3-148 313-473 (477)
5 3lov_A Protoporphyrinogen oxid 99.0 2.4E-10 8.1E-15 101.8 4.3 146 2-158 308-474 (475)
6 3i6d_A Protoporphyrinogen oxid 98.9 5.4E-10 1.8E-14 98.0 4.9 138 2-149 309-468 (470)
7 2ivd_A PPO, PPOX, protoporphyr 98.7 2E-08 6.9E-13 89.2 5.4 144 2-151 316-475 (478)
8 2yg5_A Putrescine oxidase; oxi 98.4 4.9E-07 1.7E-11 79.7 8.5 141 1-149 291-451 (453)
9 2vvm_A Monoamine oxidase N; FA 98.3 1.7E-06 5.8E-11 77.4 8.9 140 1-154 335-490 (495)
10 3ka7_A Oxidoreductase; structu 98.2 5.1E-06 1.8E-10 72.2 9.7 133 5-146 282-424 (425)
11 3nrn_A Uncharacterized protein 97.9 5.2E-05 1.8E-09 66.3 9.7 125 5-145 270-403 (421)
12 1s3e_A Amine oxidase [flavin-c 97.8 0.00022 7.5E-09 64.5 11.6 144 1-152 291-457 (520)
13 1b37_A Protein (polyamine oxid 97.6 0.00027 9.3E-09 63.1 10.1 66 86-151 383-460 (472)
14 1sez_A Protoporphyrinogen oxid 97.4 0.00017 5.8E-09 64.4 6.0 64 87-152 426-496 (504)
15 2z3y_A Lysine-specific histone 97.2 0.0082 2.8E-07 56.8 14.8 138 1-151 485-660 (662)
16 2jae_A L-amino acid oxidase; o 97.1 0.0031 1.1E-07 56.1 10.2 139 1-150 317-486 (489)
17 2e1m_C L-glutamate oxidase; L- 97.0 0.008 2.7E-07 48.4 11.3 120 21-150 12-153 (181)
18 2xag_A Lysine-specific histone 96.8 0.012 4.1E-07 58.1 12.7 37 116-152 793-832 (852)
19 4gut_A Lysine-specific histone 96.7 0.011 3.9E-07 57.6 11.6 137 1-147 610-775 (776)
20 2iid_A L-amino-acid oxidase; f 96.7 0.0069 2.4E-07 54.0 9.3 141 1-150 321-485 (498)
21 4dgk_A Phytoene dehydrogenase; 94.4 0.023 8E-07 50.3 3.3 34 117-150 458-492 (501)
22 3k7m_X 6-hydroxy-L-nicotine ox 91.8 0.25 8.7E-06 42.6 5.9 38 111-148 385-425 (431)
23 1rsg_A FMS1 protein; FAD bindi 91.3 0.16 5.4E-06 45.8 4.1 38 115-152 470-510 (516)
24 2b9w_A Putative aminooxidase; 91.2 0.11 3.7E-06 44.9 2.8 30 117-146 394-423 (424)
25 4dsg_A UDP-galactopyranose mut 90.8 0.18 6.2E-06 45.6 4.0 133 5-146 299-452 (484)
26 4gde_A UDP-galactopyranose mut 82.4 0.63 2.2E-05 40.9 2.5 72 74-147 390-477 (513)
27 2bi7_A UDP-galactopyranose mut 78.4 1.6 5.6E-05 38.0 3.8 39 117-155 336-376 (384)
28 3fpz_A Thiazole biosynthetic e 78.4 0.77 2.6E-05 38.6 1.6 35 117-151 284-326 (326)
29 3ayj_A Pro-enzyme of L-phenyla 74.8 2.7 9.3E-05 40.9 4.5 38 115-152 643-682 (721)
30 1v0j_A UDP-galactopyranose mut 71.3 1.4 4.7E-05 38.6 1.4 35 117-151 353-389 (399)
31 3oz2_A Digeranylgeranylglycero 67.6 7.8 0.00027 32.0 5.2 60 92-156 257-322 (397)
32 3fbs_A Oxidoreductase; structu 58.3 9.6 0.00033 30.3 4.0 35 117-151 258-293 (297)
33 1i8t_A UDP-galactopyranose mut 57.1 8.5 0.00029 33.1 3.7 32 116-147 332-365 (367)
34 3f8d_A Thioredoxin reductase ( 55.4 9.8 0.00034 30.5 3.6 35 117-151 280-318 (323)
35 1fl2_A Alkyl hydroperoxide red 51.5 16 0.00054 29.5 4.3 34 117-150 270-305 (310)
36 3itj_A Thioredoxin reductase 1 50.6 16 0.00054 29.5 4.2 35 117-151 300-336 (338)
37 4a5l_A Thioredoxin reductase; 49.8 17 0.00059 29.2 4.3 35 117-151 277-313 (314)
38 1trb_A Thioredoxin reductase; 49.2 17 0.00057 29.4 4.1 35 117-151 279-315 (320)
39 1vdc_A NTR, NADPH dependent th 48.7 12 0.00042 30.5 3.2 35 117-151 288-324 (333)
40 3r9u_A Thioredoxin reductase; 48.3 17 0.00059 29.0 4.0 34 117-150 277-312 (315)
41 3cty_A Thioredoxin reductase; 46.9 22 0.00074 28.9 4.5 35 116-150 280-316 (319)
42 4gcm_A TRXR, thioredoxin reduc 46.8 19 0.00065 29.3 4.1 34 117-150 271-306 (312)
43 2gqf_A Hypothetical protein HI 46.4 9.8 0.00033 33.4 2.4 32 116-147 363-400 (401)
44 3lzw_A Ferredoxin--NADP reduct 46.0 22 0.00075 28.6 4.3 36 117-152 278-317 (332)
45 2cul_A Glucose-inhibited divis 45.9 18 0.00061 28.7 3.7 35 115-149 197-231 (232)
46 2q7v_A Thioredoxin reductase; 42.2 21 0.00073 29.1 3.7 35 117-151 277-313 (325)
47 2q0l_A TRXR, thioredoxin reduc 41.2 28 0.00095 28.0 4.2 35 116-150 273-309 (311)
48 2ywl_A Thioredoxin reductase r 40.7 32 0.0011 25.6 4.2 34 117-150 136-171 (180)
49 2a87_A TRXR, TR, thioredoxin r 40.6 26 0.0009 28.8 4.1 35 116-150 280-316 (335)
50 4a9w_A Monooxygenase; baeyer-v 36.1 28 0.00094 28.2 3.4 36 116-151 314-353 (357)
51 2vdc_G Glutamate synthase [NAD 34.0 32 0.0011 30.7 3.8 34 117-150 410-444 (456)
52 3u5e_D 60S ribosomal protein L 33.7 30 0.001 30.4 3.4 60 127-186 91-188 (297)
53 1ryi_A Glycine oxidase; flavop 32.3 30 0.001 28.7 3.1 54 91-147 306-361 (382)
54 3v76_A Flavoprotein; structura 30.1 21 0.00071 31.6 1.8 29 117-145 383-417 (417)
55 2bcg_G Secretory pathway GDP d 29.7 48 0.0016 29.1 4.2 31 116-146 408-438 (453)
56 4fk1_A Putative thioredoxin re 28.6 20 0.00069 29.2 1.4 34 117-150 265-300 (304)
57 2zbw_A Thioredoxin reductase; 27.5 75 0.0026 25.7 4.7 34 117-150 280-317 (335)
58 3nlc_A Uncharacterized protein 27.2 38 0.0013 31.5 3.1 34 117-150 509-543 (549)
59 1hyu_A AHPF, alkyl hydroperoxi 25.1 67 0.0023 28.9 4.3 34 117-150 481-516 (521)
60 2i0z_A NAD(FAD)-utilizing dehy 23.6 54 0.0019 28.6 3.3 33 117-149 405-443 (447)
61 3ab1_A Ferredoxin--NADP reduct 23.0 89 0.003 25.7 4.4 35 117-151 291-329 (360)
62 3iz5_Q 60S ribosomal protein L 22.6 53 0.0018 29.0 2.9 25 125-149 89-114 (304)
63 3k30_A Histamine dehydrogenase 21.4 40 0.0014 31.5 2.1 34 117-150 642-675 (690)
64 1rp0_A ARA6, thiazole biosynth 20.9 63 0.0022 26.3 3.0 37 117-153 234-278 (284)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=177.62 Aligned_cols=144 Identities=9% Similarity=0.035 Sum_probs=110.7
Q ss_pred CCCcceeecCCCCC--CCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103 1 MGPSCCIGGPPPTR--QCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV 78 (199)
Q Consensus 1 ~~~~~~~~~~f~~~--l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V 78 (199)
|+|..+|++.|+++ ++.+++|.++.+++.+.|+++|++||+|...++..+||+|++++|+++|+ +..+++..+.+
T Consensus 190 ~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~ 266 (342)
T 3qj4_A 190 YSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYL---EHSIEDVQELV 266 (342)
T ss_dssp BCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTT---TSCHHHHHHHH
T ss_pred ccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhh---cCCHHHHHHHH
Confidence 45667889999965 66789999988776799999999999732222446999999999999998 33222233333
Q ss_pred HHHHhc----cCccCeEEeecccccCcccCCCC--CCCeee-ecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 79 LRLYLA----YQKVHFRSLFILGSNYALPTNTP--SVPCIF-VPQGRASICGGWLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 79 ~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~--~~~~l~-d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
.++|-. ++.|.+.++|||+ ||+|.... ...++. +...+|++||||+.|++||+|++||.++|++|+++|
T Consensus 267 ~~~l~~~~g~~~~p~~~~v~rW~--~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~i~~~l 342 (342)
T 3qj4_A 267 FQQLENILPGLPQPIATKCQKWR--HSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKNYI 342 (342)
T ss_dssp HHHHHHHSCSCCCCSEEEEEEET--TCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhccCCCCCceeeecccc--ccccccccCCCcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHHHHhhC
Confidence 333332 5579999999999 99998765 344676 777899999999999999999999999999998754
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.79 E-value=6.7e-19 Score=148.81 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=114.1
Q ss_pred CcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCC-cEEEEEeChHHHhhcCCcccccchhhHHHHHHH
Q 042103 3 PSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAP-HCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRL 81 (199)
Q Consensus 3 ~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~-e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~ 81 (199)
+..++++.|+++.+.++.+.|+.+. ++.|+.++++||+ +... .+||++.+++|+++++ +..+++..+++.++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~p~---~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~l~~~ 256 (336)
T 1yvv_A 184 PTWAVALAFETPLQTPMQGCFVQDS-PLDWLARNRSKPE---RDDTLDTWILHATSQWSRQNL---DASREQVIEHLHGA 256 (336)
T ss_dssp EEEEEEEEESSCCSCCCCEEEECSS-SEEEEEEGGGSTT---CCCSSEEEEEEECHHHHHHTT---TSCHHHHHHHHHHH
T ss_pred ceeEEEEEecCCCCCCCCeEEeCCC-ceeEEEecCcCCC---CCCCCcEEEEEeCHHHHHHHH---hCCHHHHHHHHHHH
Confidence 3456778899998888999998776 5999999999997 4443 6899999999999887 22122234444444
Q ss_pred Hhc-----cCccCeEEeecccccCcccCCCCCCCeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 042103 82 YLA-----YQKVHFRSLFILGSNYALPTNTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 82 LL~-----l~~p~~~~aHRWr~~yA~p~~~~~~~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
|-. ++.|.+..++||+ |++|....+..++++...+|.+||||+.++.||+|+.||.+||+.|++.+.+
T Consensus 257 l~~~lg~~~~~p~~~~~~rw~--~a~~~~~~~~~~~~~~~~rl~laGDa~~g~gv~~a~~sg~~lA~~l~~~~~~ 329 (336)
T 1yvv_A 257 FAELIDCTMPAPVFSLAHRWL--YARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp HHTTCSSCCCCCSEEEEEEEE--EEEESSCCCCSCEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCcEEEccccC--ccCCCCCCCCCeeecCCCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 333 3368889999999 9999988888889888999999999999999999999999999999999854
No 3
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.55 E-value=1.2e-13 Score=105.37 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=85.6
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHhc-----cCccCeEEeecccccCcccC
Q 042103 30 VSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYLA-----YQKVHFRSLFILGSNYALPT 104 (199)
Q Consensus 30 LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL~-----l~~p~~~~aHRWr~~yA~p~ 104 (199)
..+...+..... .......+.......+...... .......+.....+.. ++.+.+..+|||+ ||+|.
T Consensus 210 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~a~~~ 282 (336)
T 3kkj_A 210 LDWLARNRSKPE--RDDTLDTWILHATSQWSRQNLD---ASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWL--YARPA 282 (336)
T ss_dssp EEEEEEGGGSTT--CCCSSEEEEEEECHHHHHHTTT---SCHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEE--EEEES
T ss_pred cccccccccccc--cccccccceecccccccccccc---ccchhhhhhhhhhhhhhccCCcCcchheecccee--ecccc
Confidence 555555555543 1334456777888888776652 1111222333233333 5578899999999 99999
Q ss_pred CCCCCCeeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 105 NTPSVPCIFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 105 ~~~~~~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
.+...+++++...+|++|||||.|++|++|+.||+.||++|+++|++.
T Consensus 283 ~~~~~~~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 283 GAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQLE 330 (336)
T ss_dssp SCCCCSSEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccCccceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 998889999999999999999999999999999999999999999653
No 4
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=99.12 E-value=5e-11 Score=105.79 Aligned_cols=144 Identities=8% Similarity=-0.092 Sum_probs=93.2
Q ss_pred CcceeecCCCCCCCC-CcceeEeC---CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCc-ccccchhhHHH
Q 042103 3 PSCCIGGPPPTRQCI-NFEGAFAT---GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVP-QQRRWKWVCSR 77 (199)
Q Consensus 3 ~~~~~~~~f~~~l~~-~~dga~v~---~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~p-qe~~~~~~~e~ 77 (199)
+..+|.+.|+++... +--|..+. +..++.|+-+++..|++.+.++...++++...+|+.++... .+..+++..+.
T Consensus 313 ~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~ 392 (477)
T 3nks_A 313 SVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQR 392 (477)
T ss_dssp EEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHH
T ss_pred cEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHH
Confidence 345688889887542 12255553 33467887655444542212244567888899998876410 01111123333
Q ss_pred HHHHHhc----cCccCeEEeecccccCcccCCCCCCC--------eeeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHH
Q 042103 78 VLRLYLA----YQKVHFRSLFILGSNYALPTNTPSVP--------CIFVPQGRASICGGWLLAASVESAALGGMALANHI 145 (199)
Q Consensus 78 V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~~--------~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l 145 (199)
+.++|-. ...|.+.++|||+ +|.|.-..+.. ++.+...+|.+||||+.|.+||+|++||+.+|++|
T Consensus 393 ~~~~L~~~~g~~~~~~~~~v~rw~--~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~i 470 (477)
T 3nks_A 393 AQEAAATQLGLKEMPSHCLVHLHK--NCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSV 470 (477)
T ss_dssp HHHHHHHHHCCCSCCSEEEEEEEE--EEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEEEcC--CccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHHHHHHHHHH
Confidence 3333332 3468899999999 99997765532 23333468999999999999999999999999999
Q ss_pred HHH
Q 042103 146 ADY 148 (199)
Q Consensus 146 ~~~ 148 (199)
+..
T Consensus 471 l~~ 473 (477)
T 3nks_A 471 LGT 473 (477)
T ss_dssp HHC
T ss_pred Hhc
Confidence 863
No 5
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=98.98 E-value=2.4e-10 Score=101.80 Aligned_cols=146 Identities=9% Similarity=-0.070 Sum_probs=84.2
Q ss_pred CCcceeecCCCCCCCCCcce--eEeCCCCcE-----EEEEe--cCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccch
Q 042103 2 GPSCCIGGPPPTRQCINFEG--AFATGVDSV-----SWMAN--NYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWK 72 (199)
Q Consensus 2 ~~~~~~~~~f~~~l~~~~dg--a~v~~~~~L-----sWiA~--nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~ 72 (199)
++.+++.+.|+++.+.+.++ ..+.....+ .|.++ ++.+|+ ...+++.....+++++. +..++
T Consensus 308 ~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~------~~~l~~~~~~~~~~~~~---~~~~e 378 (475)
T 3lov_A 308 HSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD------HTVLRAFVGRPGNDHLV---HESDE 378 (475)
T ss_dssp EEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT------EEEEEEEECBTTBCGGG---GSCHH
T ss_pred CeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC------cEEEEEEeCCCCCCccc---CCCHH
Confidence 45678889998876544443 444433222 34332 233331 22233333334444333 11111
Q ss_pred hhHHHHHHHHhc----cCccCeEEeecccccCcccCCCCCC--------CeeeecCCCeEEEeCCCCCCchHHHHHHHHH
Q 042103 73 WVCSRVLRLYLA----YQKVHFRSLFILGSNYALPTNTPSV--------PCIFVPQGRASICGGWLLAASVESAALGGMA 140 (199)
Q Consensus 73 ~~~e~V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~--------~~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~a 140 (199)
+..+.+.++|-. ...|.+..+|||+ ++.|.-..+. +.+..+..+|.+||||+.+..+|+|++||..
T Consensus 379 ~~~~~~~~~L~~~~g~~~~p~~~~v~~w~--~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~~ 456 (475)
T 3lov_A 379 VLQQAVLQDLEKICGRTLEPKQVIISRLM--DGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAKT 456 (475)
T ss_dssp HHHHHHHHHHHHHHSSCCCCSEEEEEEEE--EEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEEEcc--cCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHH
Confidence 223333333333 2368899999999 9988766553 2344455789999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchh
Q 042103 141 LANHIADYLGSGGVHPEE 158 (199)
Q Consensus 141 LA~~l~~~l~~~~~~~~~ 158 (199)
+|++|++.+......++|
T Consensus 457 aA~~i~~~l~~~~~~~~~ 474 (475)
T 3lov_A 457 MIESIELEQSHTDESVNE 474 (475)
T ss_dssp HHHHHHHTC---------
T ss_pred HHHHHHHHhhcccccccC
Confidence 999999999777655554
No 6
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.93 E-value=5.4e-10 Score=98.05 Aligned_cols=138 Identities=9% Similarity=-0.017 Sum_probs=88.0
Q ss_pred CCcceeecCCCCCCCC-C--cceeEeCCCCc-----EEEEEe--cCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccc
Q 042103 2 GPSCCIGGPPPTRQCI-N--FEGAFATGVDS-----VSWMAN--NYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRW 71 (199)
Q Consensus 2 ~~~~~~~~~f~~~l~~-~--~dga~v~~~~~-----LsWiA~--nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~ 71 (199)
++.+++.+.|+++.+. + ..|..+..... +.|.++ +..+|. +...+++.....+++++. +..+
T Consensus 309 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-----~~~~l~~~~~~~~~~~~~---~~~~ 380 (470)
T 3i6d_A 309 TSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPE-----GKTLLRAYVGKAGDESIV---DLSD 380 (470)
T ss_dssp EEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCT-----TCEEEEEEECCSSCCGGG---TSCH
T ss_pred CceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCC-----CCEEEEEEECCCCCcccc---CCCH
Confidence 4567888899887642 2 23555543322 345443 223332 233455555555655443 1111
Q ss_pred hhhHHHHHHHHhc----cCccCeEEeecccccCcccCCCCCCC--------eeeecCCCeEEEeCCCCCCchHHHHHHHH
Q 042103 72 KWVCSRVLRLYLA----YQKVHFRSLFILGSNYALPTNTPSVP--------CIFVPQGRASICGGWLLAASVESAALGGM 139 (199)
Q Consensus 72 ~~~~e~V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~~--------~l~d~~~~Lg~CGDW~~G~rVE~A~lSG~ 139 (199)
++..+.+.++|-. ...|.+..+|||+ ++.|.-..+.. .+..+..+|.+||||+.|..||+|++||.
T Consensus 381 ~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~--~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~ 458 (470)
T 3i6d_A 381 NDIINIVLEDLKKVMNINGEPEMTCVTRWH--ESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGK 458 (470)
T ss_dssp HHHHHHHHHHHGGGSCCCSCCSEEEEEEEE--EEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEEEcC--CccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHH
Confidence 2234444444444 2468888999999 99886665532 23345578999999999999999999999
Q ss_pred HHHHHHHHHh
Q 042103 140 ALANHIADYL 149 (199)
Q Consensus 140 aLA~~l~~~l 149 (199)
.+|++|++.|
T Consensus 459 ~aA~~i~~~l 468 (470)
T 3i6d_A 459 AAVSDALTYL 468 (470)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999877
No 7
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=98.65 E-value=2e-08 Score=89.18 Aligned_cols=144 Identities=7% Similarity=-0.059 Sum_probs=84.7
Q ss_pred CCcceeecCCCCCCC-C-CcceeEeC--CCCcEEEEEecCCC-CCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103 2 GPSCCIGGPPPTRQC-I-NFEGAFAT--GVDSVSWMANNYAK-LLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS 76 (199)
Q Consensus 2 ~~~~~~~~~f~~~l~-~-~~dga~v~--~~~~LsWiA~nsSK-pg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e 76 (199)
++..++.+.|+++.+ . +.-+..+. .+..+.++..++++ +. ...++..+++++.+..++.... +..+++..+
T Consensus 316 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~p~g~~~l~~~~~~~~~~~~~---~~~~~~~~~ 391 (478)
T 2ivd_A 316 APIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPF-RAEGGRVLYSCMVGGARQPGLV---EQDEDALAA 391 (478)
T ss_dssp CCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGG-GBSTTCEEEEEEEECTTCGGGG---GSCHHHHHH
T ss_pred CcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCC-cCCCCCEEEEEEeCCcCCcccc---CCCHHHHHH
Confidence 566788899988742 2 11233332 12236667766665 22 0012345778887776664432 111112233
Q ss_pred HHHHHHhc----cCccCeEEeecccccCcccCCCCCCCee-------eecCCCeEEEeCCCCCCchHHHHHHHHHHHHHH
Q 042103 77 RVLRLYLA----YQKVHFRSLFILGSNYALPTNTPSVPCI-------FVPQGRASICGGWLLAASVESAALGGMALANHI 145 (199)
Q Consensus 77 ~V~~~LL~----l~~p~~~~aHRWr~~yA~p~~~~~~~~l-------~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l 145 (199)
.+.+.|-. ...|....+|+|. ++.|.-.++.... .....+|.+||||+.|..||+|++||+.+|++|
T Consensus 392 ~~~~~l~~~~~~~~~p~~~~~~~w~--~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~gA~~SG~~aA~~i 469 (478)
T 2ivd_A 392 LAREELKALAGVTARPSFTRVFRWP--LGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLNDCIRNAAQLADAL 469 (478)
T ss_dssp HHHHHHHHHHCCCSCCSEEEEEEES--SCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEEECC--CcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 33333333 3357777899999 9887555442111 111368999999998888999999999999999
Q ss_pred HHHhcC
Q 042103 146 ADYLGS 151 (199)
Q Consensus 146 ~~~l~~ 151 (199)
++.+.+
T Consensus 470 ~~~l~~ 475 (478)
T 2ivd_A 470 VAGNTS 475 (478)
T ss_dssp CC----
T ss_pred HHhhcc
Confidence 887754
No 8
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=98.44 E-value=4.9e-07 Score=79.69 Aligned_cols=141 Identities=11% Similarity=-0.081 Sum_probs=85.1
Q ss_pred CCCcceeecCCCCCCCC--CcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHH
Q 042103 1 MGPSCCIGGPPPTRQCI--NFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRV 78 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~--~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V 78 (199)
|++.+.+.+.|+++.+. .+.|..+....++.|+.+++ ++. . ...+++.+...+++++.. +..+++..+.+
T Consensus 291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~ 362 (453)
T 2yg5_A 291 LGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVYDNT-NHE---D-DRGTLVAFVSDEKADAMF---ELSAEERKATI 362 (453)
T ss_dssp ECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCEEEECC-CTT---C-SSEEEEEEEEHHHHHHHH---HSCHHHHHHHH
T ss_pred CcceEEEEEEECCCCCCCCCCCceeecCCCCeEEEEeCC-CCC---C-CCCEEEEEeccHHHHHHh---cCCHHHHHHHH
Confidence 46677888899887532 34555554444577876655 442 1 234788888777765432 11111223333
Q ss_pred HHHHhc-----cCccCeEEeeccccc-Ccc----cCCCCCC-----CeeeecCCCeEEEeCCCC---CCchHHHHHHHHH
Q 042103 79 LRLYLA-----YQKVHFRSLFILGSN-YAL----PTNTPSV-----PCIFVPQGRASICGGWLL---AASVESAALGGMA 140 (199)
Q Consensus 79 ~~~LL~-----l~~p~~~~aHRWr~~-yA~----p~~~~~~-----~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~a 140 (199)
.+.|-. ...|.....|+|.++ |++ +...++. +.+..+..+|.+|||++. .+.||+|++||..
T Consensus 363 l~~L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~ 442 (453)
T 2yg5_A 363 LASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQR 442 (453)
T ss_dssp HHHHHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHH
T ss_pred HHHHHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccccchHHHHHHHHH
Confidence 333322 346888889999732 222 1111111 112234468999999873 3589999999999
Q ss_pred HHHHHHHHh
Q 042103 141 LANHIADYL 149 (199)
Q Consensus 141 LA~~l~~~l 149 (199)
+|++|++.+
T Consensus 443 aA~~i~~~l 451 (453)
T 2yg5_A 443 TAADIIARS 451 (453)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999999876
No 9
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=98.31 E-value=1.7e-06 Score=77.40 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=85.8
Q ss_pred CCCcceeecCCCCCCCCCcceeEeCCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHH
Q 042103 1 MGPSCCIGGPPPTRQCINFEGAFATGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLR 80 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~~dga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~ 80 (199)
|++.+.|.+.|+++.+.+|.|....+. .+.|+-.++..|+ +...++.... ..+ ++.++| ..+.+.+
T Consensus 335 ~~~~~kv~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-----~~~vl~~~~~-~~~--~~~~~e-----~~~~~~~ 400 (495)
T 2vvm_A 335 VSMCTKVHAEVDNKDMRSWTGIAYPFN-KLCYAIGDGTTPA-----GNTHLVCFGN-SAN--HIQPDE-----DVRETLK 400 (495)
T ss_dssp CCCCEEEEEEESCGGGGGEEEEECSSC-SSCEEEEEEECTT-----SCEEEEEEEC-STT--CCCTTT-----CHHHHHH
T ss_pred CCceeEEEEEECCccCCCceeEecCCC-CcEEEecCCCCCC-----CCeEEEEEeC-ccc--cCCCHH-----HHHHHHH
Confidence 466778899999876545666555444 4788887766653 2234444332 221 232222 3445544
Q ss_pred HHhc----cCccCeEEeecccc-cC---cccCCCCCC-----CeeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHH
Q 042103 81 LYLA----YQKVHFRSLFILGS-NY---ALPTNTPSV-----PCIFVPQGRASICGGWLL---AASVESAALGGMALANH 144 (199)
Q Consensus 81 ~LL~----l~~p~~~~aHRWr~-~y---A~p~~~~~~-----~~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~ 144 (199)
.|-. ...|....+|||.+ .| +.+.-+++. +.+..+..+|.+||||+. .+.||+|++||..+|++
T Consensus 401 ~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~ 480 (495)
T 2vvm_A 401 AVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAARV 480 (495)
T ss_dssp HHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHH
Confidence 4443 24567778899941 12 222222221 123345679999999986 47899999999999999
Q ss_pred HHHHhcCCCC
Q 042103 145 IADYLGSGGV 154 (199)
Q Consensus 145 l~~~l~~~~~ 154 (199)
|++.+.+...
T Consensus 481 i~~~l~~~~~ 490 (495)
T 2vvm_A 481 VLEELGTKRE 490 (495)
T ss_dssp HHHHHCCC--
T ss_pred HHHHhccccC
Confidence 9999976543
No 10
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.22 E-value=5.1e-06 Score=72.22 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=78.7
Q ss_pred ceeecCCCCCCCCCcceeEeCC-CCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHh
Q 042103 5 CCIGGPPPTRQCINFEGAFATG-VDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYL 83 (199)
Q Consensus 5 ~~~~~~f~~~l~~~~dga~v~~-~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL 83 (199)
.++.+.|++++. ...+.++.. ...+.++...|.+-......+.+...+|....|. +. +. .++..+.+.++|-
T Consensus 282 ~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~--~~---~~-~~~~~~~~~~~l~ 354 (425)
T 3ka7_A 282 IKICLAADEPLV-GHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPE--NV---KN-LESEIEMGLEDLK 354 (425)
T ss_dssp EEEEEEESSCSS-CSSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGG--GG---GG-HHHHHHHHHHHHH
T ss_pred EEEEeecCCCcc-CcCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccc--cc---cc-hHHHHHHHHHHHH
Confidence 456777887754 445555543 3347777777766321112234444445443331 11 10 0112334434433
Q ss_pred c-cC--ccCeEEeecccccCcccCCCCCCCeeeec---CCCeEEEeCCCCC---CchHHHHHHHHHHHHHHH
Q 042103 84 A-YQ--KVHFRSLFILGSNYALPTNTPSVPCIFVP---QGRASICGGWLLA---ASVESAALGGMALANHIA 146 (199)
Q Consensus 84 ~-l~--~p~~~~aHRWr~~yA~p~~~~~~~~l~d~---~~~Lg~CGDW~~G---~rVE~A~lSG~aLA~~l~ 146 (199)
. ++ .+....+++|+ .+.|....+....-.. -.+|.+||||+.+ -.||+|++||+.++++|+
T Consensus 355 ~~~p~~~~~~~~v~~~~--~~~P~~~~~~~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 355 EIFPGKRYEVLLIQSYH--DEWPVNRAASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp HHSTTCCEEEEEEEEEB--TTBCSBSSCTTCCCCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred HhCCCCceEEEEEEEEC--CCccccccccCCCCCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhh
Confidence 3 32 45667899999 9999877664433322 2379999999977 899999999999999886
No 11
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=97.90 E-value=5.2e-05 Score=66.34 Aligned_cols=125 Identities=10% Similarity=-0.000 Sum_probs=65.5
Q ss_pred ceeecCCCCCCCCCcceeEe-CCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHHHHh
Q 042103 5 CCIGGPPPTRQCINFEGAFA-TGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLRLYL 83 (199)
Q Consensus 5 ~~~~~~f~~~l~~~~dga~v-~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~~LL 83 (199)
.++.+.++.+. .+-.+.++ .+.. +..+...|.+-.....++...+.++. ++ |.+. +++..+.+.++|-
T Consensus 270 ~~v~l~~~~~~-~~~~~~~~~~~~~-~~~i~~~s~~~p~~ap~G~~~~~~~~-------~~-~~~~-~~~~~~~~~~~L~ 338 (421)
T 3nrn_A 270 IKFNLAVPGEP-RIGNTIVFTPGLM-INGFNEPSALDKSLAREGYTLIMAHM-------AL-KNGN-VKKAIEKGWEELL 338 (421)
T ss_dssp EEEEEEEESSC-SSCSSEEECTTSS-SCEEECGGGTCGGGSCTTEEEEEEEE-------EC-TTCC-HHHHHHHHHHHHH
T ss_pred EEEEEEEcCCc-ccCCeEEEcCCcc-eeeEeccCCCCCCcCCCCceEEEEEE-------ee-cccc-HHHHHHHHHHHHH
Confidence 45666666663 22334444 3333 66666666653211112333344433 22 2111 1122444444444
Q ss_pred c-cCccCeEEeecccccCcccCCCC----CCCeeeecCCCeEEEeCCCCCC-ch--HHHHHHHHHHHHHH
Q 042103 84 A-YQKVHFRSLFILGSNYALPTNTP----SVPCIFVPQGRASICGGWLLAA-SV--ESAALGGMALANHI 145 (199)
Q Consensus 84 ~-l~~p~~~~aHRWr~~yA~p~~~~----~~~~l~d~~~~Lg~CGDW~~G~-rV--E~A~lSG~aLA~~l 145 (199)
. ++......++||+ -++|.... ..+ ..+ .+|.+||||+.++ .+ |+|..||+.+|++|
T Consensus 339 ~~~p~~~~~~~~~~~--~~~p~~~~~~~~~~~--~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 339 EIFPEGEPLLAQVYR--DGNPVNRTRAGLHIE--WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp HHCTTCEEEEEEEC---------------CCC--CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCeEEEeeecc--CCCCcccccCCCCCC--CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 4 4444455789999 88887631 122 444 7899999999988 56 99999999999999
No 12
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=97.75 E-value=0.00022 Score=64.46 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=79.4
Q ss_pred CCCcceeecCCCCCCCC--CcceeEe--CCCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103 1 MGPSCCIGGPPPTRQCI--NFEGAFA--TGVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS 76 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~--~~dga~v--~~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e 76 (199)
|++.+.+.+.|+++.+. ++.|..+ .+..++.++-+ ++++. . +....+.......+++... ..+++..+
T Consensus 291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d-~~~~~---~-~~~~l~~~~~~~~a~~~~~---~~~~e~~~ 362 (520)
T 1s3e_A 291 LGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLD-DTKPE---G-NYAAIMGFILAHKARKLAR---LTKEERLK 362 (520)
T ss_dssp BCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEE-CCCTT---S-CSCEEEEEEETHHHHHHTT---SCHHHHHH
T ss_pred CcceEEEEEEeCCCcccCCCCCceeeccCCCCceEEEee-CCCCC---C-CCCEEEEEccchhhhhhhc---CCHHHHHH
Confidence 46677889999988642 3445433 33334666554 44442 1 1134444444444433221 00111233
Q ss_pred HHHHHHhc------cCccCeEEeeccccc-Ccc----cCCCCCC-----CeeeecCCCeEEEeCCC---CCCchHHHHHH
Q 042103 77 RVLRLYLA------YQKVHFRSLFILGSN-YAL----PTNTPSV-----PCIFVPQGRASICGGWL---LAASVESAALG 137 (199)
Q Consensus 77 ~V~~~LL~------l~~p~~~~aHRWr~~-yA~----p~~~~~~-----~~l~d~~~~Lg~CGDW~---~G~rVE~A~lS 137 (199)
.+.+.|-. ...|.....++|..+ |+. +..+++. +.+-.+-.+|.+|||++ ..+.||+|++|
T Consensus 363 ~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~S 442 (520)
T 1s3e_A 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEA 442 (520)
T ss_dssp HHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHH
T ss_pred HHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCcEEhHHHHHH
Confidence 44333322 236888889999721 221 1111111 11122335899999986 34589999999
Q ss_pred HHHHHHHHHHHhcCC
Q 042103 138 GMALANHIADYLGSG 152 (199)
Q Consensus 138 G~aLA~~l~~~l~~~ 152 (199)
|..+|++|++.+.+.
T Consensus 443 G~~aA~~i~~~l~~~ 457 (520)
T 1s3e_A 443 GERAAREILHAMGKI 457 (520)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998643
No 13
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.62 E-value=0.00027 Score=63.08 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=44.3
Q ss_pred CccCeEEeeccccc----CcccCCCCCCC-----eeeecCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 86 QKVHFRSLFILGSN----YALPTNTPSVP-----CIFVPQGRASICGGWLL---AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 86 ~~p~~~~aHRWr~~----yA~p~~~~~~~-----~l~d~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
+.|....+++|.++ -+.+..+.+.. .+-.+-.+|.+|||++. ++.||||++||+.+|++|++.+.+
T Consensus 383 ~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~ 460 (472)
T 1b37_A 383 PDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK 460 (472)
T ss_dssp CCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 45666678999310 22221222221 12234468999999985 569999999999999999998854
No 14
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.43 E-value=0.00017 Score=64.39 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=50.2
Q ss_pred ccCeEEeecccccCcccCCCCCCCe-------eeecCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 87 KVHFRSLFILGSNYALPTNTPSVPC-------IFVPQGRASICGGWLLAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 87 ~p~~~~aHRWr~~yA~p~~~~~~~~-------l~d~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
.|....++||. ++.|.-..+..- ...+-.+|.+||||+.|..||+|+.||..+|++|++.+.+.
T Consensus 426 ~p~~~~~~~w~--~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il~~l~~~ 496 (504)
T 1sez_A 426 EPTYVNHLYWS--KAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESV 496 (504)
T ss_dssp CCSSEEEEEEE--EEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEEeECC--CCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 57888999999 887765443210 11234689999999999999999999999999999998654
No 15
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.17 E-value=0.0082 Score=56.78 Aligned_cols=138 Identities=14% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCCcceeecCCCCCCCCC-cc--eeEeC---CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCC-cccccchh
Q 042103 1 MGPSCCIGGPPPTRQCIN-FE--GAFAT---GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKV-PQQRRWKW 73 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~-~d--ga~v~---~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~-pqe~~~~~ 73 (199)
||+...|.+.|+++.+.. .+ |.... +.. .-++--++++. ...+.......+++-.. +.| +
T Consensus 485 ~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~-~~~~~~~~~~~--------~vL~~~~~G~~a~~~~~lsde----e 551 (662)
T 2z3y_A 485 FGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRG-ELFLFWNLYKA--------PILLALVAGEAAGIMENISDD----V 551 (662)
T ss_dssp ECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTT-EEEEEECCSSS--------SEEEEEECTHHHHHHTTSCHH----H
T ss_pred ccceeEEEEEcCcccccCCCCceeeecCCCCCCC-ceeEEEeCCCC--------CEEEEEeccHhHHHHHhCCHH----H
Confidence 577888999999987642 12 21111 111 22233333321 24455455555554221 111 1
Q ss_pred hHHHHHH---HHhc---cCccCeEEeeccccc------CcccCCC-CC-------CCe--------eeecCCCeEEEeCC
Q 042103 74 VCSRVLR---LYLA---YQKVHFRSLFILGSN------YALPTNT-PS-------VPC--------IFVPQGRASICGGW 125 (199)
Q Consensus 74 ~~e~V~~---~LL~---l~~p~~~~aHRWr~~------yA~p~~~-~~-------~~~--------l~d~~~~Lg~CGDW 125 (199)
..+.+.+ .++. .+.|....++||.++ |+..... .. .|. ...+..+|.++|++
T Consensus 552 ~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ 631 (662)
T 2z3y_A 552 IVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEH 631 (662)
T ss_dssp HHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGG
T ss_pred HHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEecc
Confidence 2233322 3333 346888889999842 2221110 00 010 12233689999998
Q ss_pred CC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 126 LL---AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 126 ~~---G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
+. .+-||||++||...|++|++.+..
T Consensus 632 ts~~~~g~v~GAi~SG~raA~~i~~~~~g 660 (662)
T 2z3y_A 632 TIRNYPATVHGALLSGLREAGRIADQFLG 660 (662)
T ss_dssp GCTTSTTSHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHHccC
Confidence 76 378999999999999999998753
No 16
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.07 E-value=0.0031 Score=56.09 Aligned_cols=139 Identities=13% Similarity=0.021 Sum_probs=76.4
Q ss_pred CCCcceeecCCCCCCCC---Ccc-eeEeCCCCcEEEEEecCCCCCCCCCCCCcEEE-EEeChHHHhhcCC-cccccchhh
Q 042103 1 MGPSCCIGGPPPTRQCI---NFE-GAFATGVDSVSWMANNYAKLLSSQSDAPHCWT-SSTLQLYGKRNKV-PQQRRWKWV 74 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~---~~d-ga~v~~~~~LsWiA~nsSKpg~~~~~~~e~WV-lhaTp~wS~~hl~-pqe~~~~~~ 74 (199)
|++.++|.+.|+++.+. .+. +....+.+ +..+...|.+.. .+ ....+ .......+++... +.| +.
T Consensus 317 ~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~-~~~~~~~s~~~~---~~-~~~l~~~~~~g~~~~~~~~~~~~----~~ 387 (489)
T 2jae_A 317 PSSSGKLGIEYSRRWWETEDRIYGGASNTDKD-ISQIMFPYDHYN---SD-RGVVVAYYSSGKRQEAFESLTHR----QR 387 (489)
T ss_dssp CCCEEEEEEEESSCHHHHTTCCCSCEEEESST-TCEEECCSSSTT---SS-CEEEEEEEEETHHHHHHHTSCHH----HH
T ss_pred CccceEEEEEeCCCCccCCCCcccccccCCCC-ceEEEeCCCCCC---CC-CCEEEEEeeCCchhhhhhcCCHH----HH
Confidence 56778899999887421 222 23344543 667776666542 11 22222 2234444433211 111 12
Q ss_pred HHHHHHH---Hhcc---CccCeEEeecccccCcccCCC------------CCC-----CeeeecCCCeEEEeCCC--CCC
Q 042103 75 CSRVLRL---YLAY---QKVHFRSLFILGSNYALPTNT------------PSV-----PCIFVPQGRASICGGWL--LAA 129 (199)
Q Consensus 75 ~e~V~~~---LL~l---~~p~~~~aHRWr~~yA~p~~~------------~~~-----~~l~d~~~~Lg~CGDW~--~G~ 129 (199)
.+.+.+. ++.. ..|.....++|. ...-... ++. +.+..+..+|.+||+++ .++
T Consensus 388 ~~~~l~~L~~~~~~~~~~~~~~~~~~~W~--~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~~~~~~ 465 (489)
T 2jae_A 388 LAKAIAEGSEIHGEKYTRDISSSFSGSWR--RTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHLSNAIA 465 (489)
T ss_dssp HHHHHHHHHHHHCGGGGSSEEEEEEEEGG--GSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGGBSSTT
T ss_pred HHHHHHHHHHHcCcchhhhccccEEEEcC--CCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHhccCcc
Confidence 3333333 2222 245666789998 4311100 110 01112346899999987 478
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 042103 130 SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 130 rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.||+|++||..+|++|++.+.
T Consensus 466 ~v~gAi~sg~~aA~~i~~~l~ 486 (489)
T 2jae_A 466 WQHGALTSARDVVTHIHERVA 486 (489)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 17
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.02 E-value=0.008 Score=48.38 Aligned_cols=120 Identities=14% Similarity=0.029 Sum_probs=71.5
Q ss_pred eeEeCCCCcEEEEEecCCCCCCCCCCCC-cEEEEEeChHHHhhc--CCcccccchhhHHHHHHHHhc-----cCccC-eE
Q 042103 21 GAFATGVDSVSWMANNYAKLLSSQSDAP-HCWTSSTLQLYGKRN--KVPQQRRWKWVCSRVLRLYLA-----YQKVH-FR 91 (199)
Q Consensus 21 ga~v~~~~~LsWiA~nsSKpg~~~~~~~-e~WVlhaTp~wS~~h--l~pqe~~~~~~~e~V~~~LL~-----l~~p~-~~ 91 (199)
+++..+. +|.+|-..|.-.. .++. ..++.....+.+++- +.++| ..+.+.+.|-. + .+. -.
T Consensus 12 g~~~td~-pi~~i~d~S~~~~---~~g~~~~L~~~~~g~~A~~~~~l~~~e-----~~~~~l~~L~~~~g~~~-~~~~~~ 81 (181)
T 2e1m_C 12 GGSTTDN-PNRFMYYPSHPVP---GTQGGVVLAAYSWSDDAARWDSFDDAE-----RYGYALENLQSVHGRRI-EVFYTG 81 (181)
T ss_dssp CEEEESS-TTBEEECCSSCCT---TCSCEEEEEEEEEHHHHHHHTTSCTTT-----THHHHHHHHHHHHCGGG-GGTEEE
T ss_pred eeEecCC-CeEEEEECCCCcC---CCCCCEEEEEEcCChHHHHHHcCCHHH-----HHHHHHHHHHHHhCCCc-HhhccC
Confidence 5666676 4999988776531 1222 245555556666553 33322 34444443333 3 344 34
Q ss_pred --Eeeccccc-Ccc---cCCCCCC-----CeeeecCCCeEEEeCCCC--CCchHHHHHHHHHHHHHHHHHhc
Q 042103 92 --SLFILGSN-YAL---PTNTPSV-----PCIFVPQGRASICGGWLL--AASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 92 --~aHRWr~~-yA~---p~~~~~~-----~~l~d~~~~Lg~CGDW~~--G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
..++|.++ |+. ...+++. +.+-.+..+|.+||+.+. .+-||||++||...|++|++.+.
T Consensus 82 ~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~ 153 (181)
T 2e1m_C 82 AGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPV 153 (181)
T ss_dssp EEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC
T ss_pred cceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 68999621 221 1111221 122335679999999887 78999999999999999998774
No 18
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=96.80 E-value=0.012 Score=58.14 Aligned_cols=37 Identities=30% Similarity=0.330 Sum_probs=32.3
Q ss_pred CCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 116 QGRASICGGWLL---AASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 116 ~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
..+|.++|+++. .+-||||++||...|++|++.+...
T Consensus 793 ~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~~~ 832 (852)
T 2xag_A 793 IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGA 832 (852)
T ss_dssp CCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHhhCC
Confidence 468999999875 4789999999999999999988644
No 19
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=96.71 E-value=0.011 Score=57.58 Aligned_cols=137 Identities=15% Similarity=0.015 Sum_probs=73.4
Q ss_pred CCCcceeecCCCCCCCC------CcceeEeC--CCCcEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhc--CCccccc
Q 042103 1 MGPSCCIGGPPPTRQCI------NFEGAFAT--GVDSVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRN--KVPQQRR 70 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~------~~dga~v~--~~~~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~h--l~pqe~~ 70 (199)
||+...|.+.|+++.+- ++-|.... +...+..+..|.+..+ ....++.....+.+++- +.+ +
T Consensus 610 ~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g-----~~~vL~~~i~G~~a~~l~~lsd-e-- 681 (776)
T 4gut_A 610 AGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQK-----KHSVLMSVIAGEAVASVRTLDD-K-- 681 (776)
T ss_dssp EECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTS-----CSCEEEEEECTHHHHHHHTSCH-H--
T ss_pred CeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCCCCC-----CceEEEEEecchhHHHHHcCCH-H--
Confidence 35667788999988653 11111111 1111333334444332 12345555566655542 212 1
Q ss_pred chhhHHHHHHHH---hc---cCccCeEEeeccccc------CcccCCC-CC--CCeeeec-CCCeEEEeCCCC---CCch
Q 042103 71 WKWVCSRVLRLY---LA---YQKVHFRSLFILGSN------YALPTNT-PS--VPCIFVP-QGRASICGGWLL---AASV 131 (199)
Q Consensus 71 ~~~~~e~V~~~L---L~---l~~p~~~~aHRWr~~------yA~p~~~-~~--~~~l~d~-~~~Lg~CGDW~~---G~rV 131 (199)
+..+.+.+.| +. .+.|....+++|.++ |+.+... .. ...+..+ ..+|.++|++.. .+-|
T Consensus 682 --el~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~gtv 759 (776)
T 4gut_A 682 --QVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTV 759 (776)
T ss_dssp --HHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSCSSH
T ss_pred --HHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCCcCH
Confidence 1233333333 32 346888899999821 1111110 00 0011112 578999999986 4789
Q ss_pred HHHHHHHHHHHHHHHH
Q 042103 132 ESAALGGMALANHIAD 147 (199)
Q Consensus 132 E~A~lSG~aLA~~l~~ 147 (199)
|||++||...|++|++
T Consensus 760 eGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 760 TGAYLSGVREASKIAA 775 (776)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999975
No 20
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=96.70 E-value=0.0069 Score=53.96 Aligned_cols=141 Identities=13% Similarity=0.003 Sum_probs=74.3
Q ss_pred CCCcceeecCCCCCCCCC---cceeEeCCCCcEEEEEecCC-CCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHH
Q 042103 1 MGPSCCIGGPPPTRQCIN---FEGAFATGVDSVSWMANNYA-KLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCS 76 (199)
Q Consensus 1 ~~~~~~~~~~f~~~l~~~---~dga~v~~~~~LsWiA~nsS-Kpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e 76 (199)
|++.+.|.+.|+++.+.. +.+....+.+ +.++...+. .|. +..+.+.....+.++... ...+++..+
T Consensus 321 ~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~s~~~p~-----g~~~L~~~~~g~~a~~~~---~~~~~~~~~ 391 (498)
T 2iid_A 321 YRSGTKIFLTCTTKFWEDDGIHGGKSTTDLP-SRFIYYPNHNFTN-----GVGVIIAYGIGDDANFFQ---ALDFKDCAD 391 (498)
T ss_dssp EECEEEEEEEESSCGGGGGTCCSSEEEESST-TCEEECCSSCCTT-----SCEEEEEEEEHHHHHTTT---TSCHHHHHH
T ss_pred CcceeEEEEEeCCCCccCCCccCCcccCCCC-cceEEECCCCCCC-----CCcEEEEEeCCccHhhhh---cCCHHHHHH
Confidence 467788889998885422 1233333433 456655442 232 233455544444443321 010111233
Q ss_pred HHHHHHhc---cCcc------CeEEeeccccc-C---cccCCCCCC-----CeeeecCCCeEEEeCCCC--CCchHHHHH
Q 042103 77 RVLRLYLA---YQKV------HFRSLFILGSN-Y---ALPTNTPSV-----PCIFVPQGRASICGGWLL--AASVESAAL 136 (199)
Q Consensus 77 ~V~~~LL~---l~~p------~~~~aHRWr~~-y---A~p~~~~~~-----~~l~d~~~~Lg~CGDW~~--G~rVE~A~l 136 (199)
.+.+.|-. ++.+ .....++|.++ | +.....++. +.+..+..+|.+||+++. .+-||+|++
T Consensus 392 ~~l~~L~~~~g~~~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~~g~~~GAi~ 471 (498)
T 2iid_A 392 IVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIK 471 (498)
T ss_dssp HHHHHHHHHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHH
T ss_pred HHHHHHHHHcCCChhhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccCCcCHHHHHH
Confidence 33333322 2211 23568999821 1 110011110 012234568999999873 368999999
Q ss_pred HHHHHHHHHHHHhc
Q 042103 137 GGMALANHIADYLG 150 (199)
Q Consensus 137 SG~aLA~~l~~~l~ 150 (199)
||+.+|++|++.+.
T Consensus 472 SG~raA~~i~~~l~ 485 (498)
T 2iid_A 472 SGLRAARDVNLASE 485 (498)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999885
No 21
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=94.39 E-value=0.023 Score=50.34 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=27.3
Q ss_pred CCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLL-AASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|++||||.. |+.|++|.+||+.+|++|++.|.
T Consensus 458 ~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~ 492 (501)
T 4dgk_A 458 TNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLI 492 (501)
T ss_dssp TTEEECCCH------HHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 57999999986 67899999999999999999985
No 22
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=91.83 E-value=0.25 Score=42.61 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=30.3
Q ss_pred eeeecCCCeEEEe-CCCC--CCchHHHHHHHHHHHHHHHHH
Q 042103 111 CIFVPQGRASICG-GWLL--AASVESAALGGMALANHIADY 148 (199)
Q Consensus 111 ~l~d~~~~Lg~CG-DW~~--G~rVE~A~lSG~aLA~~l~~~ 148 (199)
.+..+..+|.++| ++.. .+-||||++||...|++|+-.
T Consensus 385 ~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 385 ELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp GGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence 3445678999999 5542 378999999999999999853
No 23
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=91.30 E-value=0.16 Score=45.78 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=32.7
Q ss_pred cCCCeEEEeCCCC---CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 115 PQGRASICGGWLL---AASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 115 ~~~~Lg~CGDW~~---G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
+..+|.+||+.+. .+-||||++||...|++|++.+.+.
T Consensus 470 ~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~ 510 (516)
T 1rsg_A 470 QDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510 (516)
T ss_dssp SSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhhhh
Confidence 4679999999874 4789999999999999999988543
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=91.19 E-value=0.11 Score=44.95 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=27.9
Q ss_pred CCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103 117 GRASICGGWLLAASVESAALGGMALANHIA 146 (199)
Q Consensus 117 ~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~ 146 (199)
.+|.+||+|+.-+-.|+|+.||+.+|++|+
T Consensus 394 ~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 394 RNTFYAGEIMSFGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp GGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred CCceEeccccccccHHHHHHHHHHHHHHhc
Confidence 479999999998999999999999999875
No 25
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=90.79 E-value=0.18 Score=45.58 Aligned_cols=133 Identities=9% Similarity=-0.027 Sum_probs=75.2
Q ss_pred ceeecCCCCCCC---CCcceeEeCCCC-cEEEEEecCCCCCCCCCCCCcEEEEEeChHHHhhcCCcccccchhhHHHHHH
Q 042103 5 CCIGGPPPTRQC---INFEGAFATGVD-SVSWMANNYAKLLSSQSDAPHCWTSSTLQLYGKRNKVPQQRRWKWVCSRVLR 80 (199)
Q Consensus 5 ~~~~~~f~~~l~---~~~dga~v~~~~-~LsWiA~nsSKpg~~~~~~~e~WVlhaTp~wS~~hl~pqe~~~~~~~e~V~~ 80 (199)
-+|.+.|+.+.. .+..++.+.+.+ .+.++..-++|-. . ......|++...-.++ ... +...++..+.+.+
T Consensus 299 ~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p-~-~ap~g~~~l~~e~~~~-~~~---~~~d~~l~~~a~~ 372 (484)
T 4dsg_A 299 NVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSK-Y-NVPEGHWSLMLEVSES-KYK---PVNHSTLIEDCIV 372 (484)
T ss_dssp EEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCG-G-GSCTTEEEEEEEEEEB-TTB---CCCTTSHHHHHHH
T ss_pred EEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCc-c-cCCCCeEEEEEEEecC-cCC---cCCHHHHHHHHHH
Confidence 356667776532 234556665532 3566776666631 0 2122356554322111 111 0011123445555
Q ss_pred HHhcc--C---ccC-eEEeecccccCcccCCCCCCCe-------eeecCCCeEEEeC---CCCC-CchHHHHHHHHHHHH
Q 042103 81 LYLAY--Q---KVH-FRSLFILGSNYALPTNTPSVPC-------IFVPQGRASICGG---WLLA-ASVESAALGGMALAN 143 (199)
Q Consensus 81 ~LL~l--~---~p~-~~~aHRWr~~yA~p~~~~~~~~-------l~d~~~~Lg~CGD---W~~G-~rVE~A~lSG~aLA~ 143 (199)
+|..+ . .+. ...++||. ++.|....+..- ..... +|.+||. |-.+ ..++.|+.||+.+|+
T Consensus 373 ~L~~~~~~~~~~~~~~~~v~r~~--~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~ 449 (484)
T 4dsg_A 373 GCLASNLLLPEDLLVSKWHYRIE--KGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAID 449 (484)
T ss_dssp HHHHTTSCCTTCCEEEEEEEEEE--EEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccceEEEEEEEEeC--ccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccccCCCChHHHHHHHHHHHH
Confidence 55442 1 232 35689999 999988865220 11223 8999999 6666 589999999999999
Q ss_pred HHH
Q 042103 144 HIA 146 (199)
Q Consensus 144 ~l~ 146 (199)
.|+
T Consensus 450 ~i~ 452 (484)
T 4dsg_A 450 HVL 452 (484)
T ss_dssp HHT
T ss_pred HHH
Confidence 997
No 26
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=82.36 E-value=0.63 Score=40.87 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=49.0
Q ss_pred hHHHHHHHHhc------cCccCeEEeecccccCcccCCCCCCC----eeee--cCCCeEEEeC---CCC-CCchHHHHHH
Q 042103 74 VCSRVLRLYLA------YQKVHFRSLFILGSNYALPTNTPSVP----CIFV--PQGRASICGG---WLL-AASVESAALG 137 (199)
Q Consensus 74 ~~e~V~~~LL~------l~~p~~~~aHRWr~~yA~p~~~~~~~----~l~d--~~~~Lg~CGD---W~~-G~rVE~A~lS 137 (199)
..+.+.++|.. -+.+....++||. ||.|.-..+.. -+.+ ...+|..||. |=- .+..+.|++|
T Consensus 390 l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~--~ayP~y~~~~~~~~~~~~~~l~~~~l~~~GR~g~~~Y~~~n~D~a~~~ 467 (513)
T 4gde_A 390 ILADCIQGLVNTEMLKPTDEIVSTYHRRFD--HGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSFML 467 (513)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEEEEEEEE--EEEECCBTTHHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccceEEEEEEECC--CeecccCHhHHHHHHHHHHHHhhcCcEEecCCcccCcCCCCHHHHHHH
Confidence 45555566655 1235678899999 99998665421 0110 1258999995 422 2478999999
Q ss_pred HHHHHHHHHH
Q 042103 138 GMALANHIAD 147 (199)
Q Consensus 138 G~aLA~~l~~ 147 (199)
|+.+|+.|++
T Consensus 468 g~~aa~~I~~ 477 (513)
T 4gde_A 468 GVEAVDNIVN 477 (513)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999986
No 27
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=78.45 E-value=1.6 Score=38.04 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=33.6
Q ss_pred CCeEEEeCC--CCCCchHHHHHHHHHHHHHHHHHhcCCCCC
Q 042103 117 GRASICGGW--LLAASVESAALGGMALANHIADYLGSGGVH 155 (199)
Q Consensus 117 ~~Lg~CGDW--~~G~rVE~A~lSG~aLA~~l~~~l~~~~~~ 155 (199)
.+|.+||.| ..+..+|.+..||+.+|++|+..+...+..
T Consensus 336 ~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~~~~~~~~~ 376 (384)
T 2bi7_A 336 TNITFVGRLGTYRYLDMDVTIAEALKTAEVYLNSLTENQPM 376 (384)
T ss_dssp SSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEccccEEEEeCCHHHHHHHHHHHHHHHhhhhhccCcC
Confidence 589999997 458899999999999999999988766543
No 28
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=78.35 E-value=0.77 Score=38.59 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCeEEEeCCC--------CCCchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWL--------LAASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~--------~G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|++|||-. .|+-+-++.+||..+|+.|+++|++
T Consensus 284 pGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~laa 326 (326)
T 3fpz_A 284 DNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 326 (326)
T ss_dssp BTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 3799999953 2566677889999999999999974
No 29
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=74.80 E-value=2.7 Score=40.90 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=33.3
Q ss_pred cCCCeEEEeCCCC--CCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 115 PQGRASICGGWLL--AASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 115 ~~~~Lg~CGDW~~--G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
++.+|.+|||.+. ++=||||+.||+.++..|...+...
T Consensus 643 ~~gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~~~~~ 682 (721)
T 3ayj_A 643 LDNRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVRANRG 682 (721)
T ss_dssp TCCCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEeehhhccCCceehHHHHHHHHHHHHHHHHhcCC
Confidence 4679999999775 5789999999999999999999654
No 30
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=71.35 E-value=1.4 Score=38.59 Aligned_cols=35 Identities=6% Similarity=0.011 Sum_probs=30.2
Q ss_pred CCeEEEeCC--CCCCchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGW--LLAASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW--~~G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.++.+||+| ..+..+|+++.||+.+|++|.+....
T Consensus 353 ~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~~~~~ 389 (399)
T 1v0j_A 353 SKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPHLR 389 (399)
T ss_dssp HCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCEEEccceEEEEecCHHHHHHHHHHHHHHHhhhhhc
Confidence 689999997 56789999999999999999875543
No 31
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=67.57 E-value=7.8 Score=31.96 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=40.8
Q ss_pred EeecccccCcccCCCCCCCeeeecCCCeEEEeCCC------CCCchHHHHHHHHHHHHHHHHHhcCCCCCc
Q 042103 92 SLFILGSNYALPTNTPSVPCIFVPQGRASICGGWL------LAASVESAALGGMALANHIADYLGSGGVHP 156 (199)
Q Consensus 92 ~aHRWr~~yA~p~~~~~~~~l~d~~~~Lg~CGDW~------~G~rVE~A~lSG~aLA~~l~~~l~~~~~~~ 156 (199)
.++.|. ...|......++. ..++.++||-. .|..+--|+.||..||+.|.+.+.++...+
T Consensus 257 ~~~~~~--~~~~~~~~~~~~~---~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~ 322 (397)
T 3oz2_A 257 DIQLVT--GGVSVSKVKMPIT---MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSP 322 (397)
T ss_dssp EEEEEE--EEEECCCCCSCCE---ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSH
T ss_pred eeeeee--ccccccCccccee---eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 345555 5555443322222 35899999953 567788899999999999999987664433
No 32
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=58.27 E-value=9.6 Score=30.27 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=30.9
Q ss_pred CCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLL-AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|++|||-.. ...+..|...|..+|..|.+++..
T Consensus 258 ~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 258 RGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp TTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 57999999776 578999999999999999999854
No 33
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=57.14 E-value=8.5 Score=33.14 Aligned_cols=32 Identities=6% Similarity=0.065 Sum_probs=28.0
Q ss_pred CCCeEEEeCC--CCCCchHHHHHHHHHHHHHHHH
Q 042103 116 QGRASICGGW--LLAASVESAALGGMALANHIAD 147 (199)
Q Consensus 116 ~~~Lg~CGDW--~~G~rVE~A~lSG~aLA~~l~~ 147 (199)
..++.+||-| ..+..+|.++.||+.+|++|++
T Consensus 332 ~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 332 EDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp CTTEEECSTTTTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEcccceeeEecCHHHHHHHHHHHHHHHhc
Confidence 3589999987 6778999999999999999864
No 34
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=55.37 E-value=9.8 Score=30.52 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=30.4
Q ss_pred CCeEEEeCCCC----CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLL----AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~----G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|+++||-.. ...+..|...|..+|+.|.+++..
T Consensus 280 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 318 (323)
T 3f8d_A 280 PGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTE 318 (323)
T ss_dssp TTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHH
Confidence 57999999776 368999999999999999998853
No 35
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=51.51 E-value=16 Score=29.51 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=29.6
Q ss_pred CCeEEEeCCCCCC--chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA--SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~--rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-...+ .+..|...|..+|..|..++.
T Consensus 270 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 270 KGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp TTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHH
Confidence 4799999987754 789999999999999999884
No 36
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=50.62 E-value=16 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.058 Sum_probs=30.5
Q ss_pred CCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLA--ASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|++|||-... ..+..|...|..+|..|.+++..
T Consensus 300 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 300 PGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp TTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHhc
Confidence 579999998753 68999999999999999999853
No 37
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=49.84 E-value=17 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCeEEEeCCCCCC--chHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLAA--SVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G~--rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|++|||-+.++ -+--|.-.|..+|..+.++|++
T Consensus 277 pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 277 DGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp TTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999988764 3666777899999999999864
No 38
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=49.19 E-value=17 Score=29.42 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=30.3
Q ss_pred CCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLA--ASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|+++||-... ..+..|...|..+|..|..+|..
T Consensus 279 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 279 PGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp TTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHHh
Confidence 479999998765 47899999999999999999953
No 39
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=48.74 E-value=12 Score=30.52 Aligned_cols=35 Identities=20% Similarity=0.045 Sum_probs=30.3
Q ss_pred CCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLA--ASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|++|||-... ..+..|...|..+|..|.+++..
T Consensus 288 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 324 (333)
T 1vdc_A 288 PGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE 324 (333)
T ss_dssp TTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHHHh
Confidence 479999998765 57999999999999999998853
No 40
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=48.30 E-value=17 Score=29.02 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=29.5
Q ss_pred CCeEEEeCCCC--CCchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLL--AASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~--G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|++|||-.. ...+..|...|..+|..|.+++.
T Consensus 277 ~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 312 (315)
T 3r9u_A 277 AGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYIE 312 (315)
T ss_dssp TTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHHH
Confidence 57999999863 36899999999999999999884
No 41
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=46.93 E-value=22 Score=28.93 Aligned_cols=35 Identities=17% Similarity=-0.034 Sum_probs=30.4
Q ss_pred CCCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhc
Q 042103 116 QGRASICGGWLLA--ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 116 ~~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
..+|+++||-... ..+..|...|..+|..|..++.
T Consensus 280 ~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 280 VPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp STTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 3479999998865 5789999999999999999884
No 42
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=46.82 E-value=19 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=28.1
Q ss_pred CCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLA--ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|++|||-... ..+-.|.-.|..+|+.|.++|.
T Consensus 271 pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~ 306 (312)
T 4gcm_A 271 PGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIE 306 (312)
T ss_dssp TTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 469999998753 3577899999999999998885
No 43
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=46.38 E-value=9.8 Score=33.36 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=27.1
Q ss_pred CCCeEEEeC------CCCCCchHHHHHHHHHHHHHHHH
Q 042103 116 QGRASICGG------WLLAASVESAALGGMALANHIAD 147 (199)
Q Consensus 116 ~~~Lg~CGD------W~~G~rVE~A~lSG~aLA~~l~~ 147 (199)
-.+|++||+ ||.|=....||-||..+++.+.+
T Consensus 363 ~~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~ 400 (401)
T 2gqf_A 363 VSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400 (401)
T ss_dssp STTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 348999995 48888999999999999998743
No 44
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=46.00 E-value=22 Score=28.63 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=30.1
Q ss_pred CCeEEEeCCC----CCCchHHHHHHHHHHHHHHHHHhcCC
Q 042103 117 GRASICGGWL----LAASVESAALGGMALANHIADYLGSG 152 (199)
Q Consensus 117 ~~Lg~CGDW~----~G~rVE~A~lSG~aLA~~l~~~l~~~ 152 (199)
.+|++|||-. ....+..|...|..+|+.|..++...
T Consensus 278 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 278 EGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp TTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhChh
Confidence 5799999976 23468999999999999999999643
No 45
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=45.94 E-value=18 Score=28.70 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=29.1
Q ss_pred cCCCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 115 PQGRASICGGWLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 115 ~~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
...+|++|||-...+-...|+.+|..+|+.|.+.+
T Consensus 197 ~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 197 RLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHHHhhc
Confidence 34579999997744678889999999999998876
No 46
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=42.21 E-value=21 Score=29.08 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=30.3
Q ss_pred CCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLLA--ASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|+++||-... ..+..|...|..+|..|..++..
T Consensus 277 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 313 (325)
T 2q7v_A 277 PMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLAA 313 (325)
T ss_dssp TTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999998764 57899999999999999998853
No 47
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=41.19 E-value=28 Score=28.00 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhc
Q 042103 116 QGRASICGGWLLA--ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 116 ~~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
..+|+++||-... ..+..|...|..+|..|.+++.
T Consensus 273 ~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 273 VQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLE 309 (311)
T ss_dssp STTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHh
Confidence 3479999998774 5799999999999999998874
No 48
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=40.73 E-value=32 Score=25.56 Aligned_cols=34 Identities=21% Similarity=0.039 Sum_probs=29.3
Q ss_pred CCeEEEeCCCCCC--chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA--SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~--rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+++++||-.... .+-.|...|..+|..|...+.
T Consensus 136 ~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 171 (180)
T 2ywl_A 136 PRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDLR 171 (180)
T ss_dssp TTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHhh
Confidence 5799999987654 788999999999999998874
No 49
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=40.56 E-value=26 Score=28.77 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=29.5
Q ss_pred CCCeEEEeCCCCC--CchHHHHHHHHHHHHHHHHHhc
Q 042103 116 QGRASICGGWLLA--ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 116 ~~~Lg~CGDW~~G--~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
..+|+++||-... ..+..|...|..+|..|..++.
T Consensus 280 ~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~ 316 (335)
T 2a87_A 280 LPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLA 316 (335)
T ss_dssp STTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhh
Confidence 3479999998764 5688999999999999998884
No 50
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=36.09 E-value=28 Score=28.17 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=29.2
Q ss_pred CCCeEEEeC-CCC---CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 116 QGRASICGG-WLL---AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 116 ~~~Lg~CGD-W~~---G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
..+|+++|| +|. ...+-.|...|..+|+.|.+++..
T Consensus 314 ~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 314 VPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp CTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 457999996 453 367889999999999999999953
No 51
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=34.02 E-value=32 Score=30.74 Aligned_cols=34 Identities=24% Similarity=0.128 Sum_probs=30.0
Q ss_pred CCeEEEeCCCCCC-chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA-SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~-rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-..++ .|-.|...|..+|+.|..+|.
T Consensus 410 ~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~~L~ 444 (456)
T 2vdc_G 410 DGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAK 444 (456)
T ss_dssp TTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeccccCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999987765 589999999999999999984
No 52
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=33.65 E-value=30 Score=30.43 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=41.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCC-----------------------CCchhhhcccCCc------cccCCc-----
Q 042103 127 LAASVESAALGGMALANHIADYLGSGG-----------------------VHPEELAVGLYND------FQPLEG----- 172 (199)
Q Consensus 127 ~G~rVE~A~lSG~aLA~~l~~~l~~~~-----------------------~~~~~~~~gl~~~------~~~~~~----- 172 (199)
.+..+++|++-|..+|++++..|.=.. .+.--+++||... |-.+.|
T Consensus 91 ~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVfaalKGA~DgG 170 (297)
T 3u5e_D 91 GLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGG 170 (297)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceehhhhhcccccC
Confidence 568999999999999999998852111 1112366777663 655555
Q ss_pred ----CCCCCCCCCCcCcc
Q 042103 173 ----HDTGQFPGFGVHGK 186 (199)
Q Consensus 173 ----~~~g~fp~~~~~~~ 186 (199)
|.--.|||.+.+.|
T Consensus 171 L~IPhs~~~fpg~d~e~k 188 (297)
T 3u5e_D 171 LYVPHSENRFPGWDFETE 188 (297)
T ss_dssp CBCCCCSTTSSSEETTTT
T ss_pred cccCCCcccccCcccccc
Confidence 55677999875543
No 53
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=32.26 E-value=30 Score=28.75 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=40.2
Q ss_pred EEeecccccCcccCCCCCCCeeeec--CCCeEEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 042103 91 RSLFILGSNYALPTNTPSVPCIFVP--QGRASICGGWLLAASVESAALGGMALANHIAD 147 (199)
Q Consensus 91 ~~aHRWr~~yA~p~~~~~~~~l~d~--~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~ 147 (199)
...+.|. ..+|.++.+.|++-+. ..++.+++. +.|..+.-|..+|..||+.|..
T Consensus 306 ~~~~~w~--g~~~~t~d~~p~ig~~~~~~~l~~~~G-~~g~G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 306 KVDRFWA--GLRPGTKDGKPYIGRHPEDSRILFAAG-HFRNGILLAPATGALISDLIMN 361 (382)
T ss_dssp EEEEEEE--EEEEECSSSCCEEEEETTEEEEEEEEC-CSSCTTTTHHHHHHHHHHHHTT
T ss_pred ceeeEEE--EecccCCCCCcEeccCCCcCCEEEEEc-CCcchHHHhHHHHHHHHHHHhC
Confidence 3468898 7777777677766543 246777766 4677899999999999999864
No 54
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=30.12 E-value=21 Score=31.58 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCeEEEe---C---CCCCCchHHHHHHHHHHHHHH
Q 042103 117 GRASICG---G---WLLAASVESAALGGMALANHI 145 (199)
Q Consensus 117 ~~Lg~CG---D---W~~G~rVE~A~lSG~aLA~~l 145 (199)
.+|++|| | ||+|=....||-||.++|+.|
T Consensus 383 ~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~~ 417 (417)
T 3v76_A 383 PGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV 417 (417)
T ss_dssp TTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCcC
Confidence 4799999 3 678889999999999888753
No 55
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=29.74 E-value=48 Score=29.09 Aligned_cols=31 Identities=6% Similarity=0.014 Sum_probs=28.9
Q ss_pred CCCeEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 042103 116 QGRASICGGWLLAASVESAALGGMALANHIA 146 (199)
Q Consensus 116 ~~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~ 146 (199)
..+|.+|||......+|+|..+++.++++|.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (453)
T 2bcg_G 408 KDNIYLSRSYDASSHFESMTDDVKDIYFRVT 438 (453)
T ss_dssp TTSEEECCCCCSCSBSHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCccccHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999997
No 56
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=28.58 E-value=20 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=27.1
Q ss_pred CCeEEEeCCCC-CCc-hHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLL-AAS-VESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~-G~r-VE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|++|||-.. +.+ +=.|.-.|..+|..|.++|.
T Consensus 265 p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~ 300 (304)
T 4fk1_A 265 KNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDIT 300 (304)
T ss_dssp TTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999764 333 66788889999999999984
No 57
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=27.53 E-value=75 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=28.4
Q ss_pred CCeEEEeCCCCC----CchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLA----ASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G----~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+++||-... ..+..|...|..+|+.|..++.
T Consensus 280 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 317 (335)
T 2zbw_A 280 PGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYAN 317 (335)
T ss_dssp TTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhh
Confidence 479999996532 4688899999999999999885
No 58
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=27.20 E-value=38 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCeEEEeCCCC-CCchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLL-AASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~-G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+|+.|||--+ .+.|-+|..+|+..|+.|+.++.
T Consensus 509 ~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~~~~ 543 (549)
T 3nlc_A 509 KGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDIV 543 (549)
T ss_dssp BTEEECHHHHTSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEccccCChhhHHHHHHHHHHHHHHHHHHHhh
Confidence 47999999543 47899999999999999999884
No 59
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=25.12 E-value=67 Score=28.87 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=29.7
Q ss_pred CCeEEEeCCCCCC--chHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAA--SVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~--rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.+++++||-...+ .+-.|.-.|..+|..|.++|.
T Consensus 481 p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~ 516 (521)
T 1hyu_A 481 KGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLI 516 (521)
T ss_dssp TTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHH
Confidence 4799999987654 789999999999999999884
No 60
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=23.64 E-value=54 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=27.2
Q ss_pred CCeEEEeC------CCCCCchHHHHHHHHHHHHHHHHHh
Q 042103 117 GRASICGG------WLLAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 117 ~~Lg~CGD------W~~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
.+|++||- +|.|-.+-.||.||+.+++.++++.
T Consensus 405 ~GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~~ 443 (447)
T 2i0z_A 405 NGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA 443 (447)
T ss_dssp BTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 36888873 5677789999999999999998765
No 61
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=23.01 E-value=89 Score=25.73 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=28.7
Q ss_pred CCeEEEeCCCC----CCchHHHHHHHHHHHHHHHHHhcC
Q 042103 117 GRASICGGWLL----AASVESAALGGMALANHIADYLGS 151 (199)
Q Consensus 117 ~~Lg~CGDW~~----G~rVE~A~lSG~aLA~~l~~~l~~ 151 (199)
.+|++|||-.. ...+..|...|..+|+.|..++..
T Consensus 291 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 329 (360)
T 3ab1_A 291 DGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIKP 329 (360)
T ss_dssp TTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcCC
Confidence 47999999653 246788999999999999998854
No 62
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=22.56 E-value=53 Score=29.00 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.6
Q ss_pred CC-CCCchHHHHHHHHHHHHHHHHHh
Q 042103 125 WL-LAASVESAALGGMALANHIADYL 149 (199)
Q Consensus 125 W~-~G~rVE~A~lSG~aLA~~l~~~l 149 (199)
|- .+..+++|++-|+.+|++.+..|
T Consensus 89 ~k~g~~N~aAAy~tGlLiA~RAl~k~ 114 (304)
T 3iz5_Q 89 LEVGLTNYAAAYCTGLLLARRVLTLR 114 (304)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 54 56799999999999999998874
No 63
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=21.40 E-value=40 Score=31.54 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCeEEEeCCCCCCchHHHHHHHHHHHHHHHHHhc
Q 042103 117 GRASICGGWLLAASVESAALGGMALANHIADYLG 150 (199)
Q Consensus 117 ~~Lg~CGDW~~G~rVE~A~lSG~aLA~~l~~~l~ 150 (199)
.++.++||-...+.+..|...|..+|+.|...+.
T Consensus 642 ~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l~ 675 (690)
T 3k30_A 642 ASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVLP 675 (690)
T ss_dssp SEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhcc
Confidence 4799999999889999999999999999988864
No 64
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=20.90 E-value=63 Score=26.29 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=30.2
Q ss_pred CCeEEEeCCC--------CCCchHHHHHHHHHHHHHHHHHhcCCC
Q 042103 117 GRASICGGWL--------LAASVESAALGGMALANHIADYLGSGG 153 (199)
Q Consensus 117 ~~Lg~CGDW~--------~G~rVE~A~lSG~aLA~~l~~~l~~~~ 153 (199)
.++.+|||-. .++-.-+|.+||..+|..|.+.|.+..
T Consensus 234 p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~~ 278 (284)
T 1rp0_A 234 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPN 278 (284)
T ss_dssp TTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhhh
Confidence 4789999743 367778999999999999999997553
Done!