BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042108
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 14/226 (6%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVG------PVEMKLEEYFRYSDSVR 247
P KPV+L + W+A +KW + L + +F G V+MK++ Y Y +S R
Sbjct: 66 PYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTR 125
Query: 248 EERPLYLFDPKFAD--KVPTLGGEYEVPVYFREDLFSVLGNER-PDYRWVIIGPAGSGSS 304
++ PLY+FD + + K L +Y+VP +F +DLF G +R P YRW ++GP SG+
Sbjct: 126 DDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTG 185
Query: 305 FHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATK 364
H+DP TSAWNA+++G K+W LFP + + D +I WF Y T+
Sbjct: 186 IHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAIT-WFNVIYPRTQ 244
Query: 365 --NW--KKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406
W + +P+E + K GE +FVP GWWH+V+NL+ +IAITQN+ S
Sbjct: 245 LPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFAS 290
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 127/226 (56%), Gaps = 14/226 (6%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVG------PVEMKLEEYFRYSDSVR 247
P KPV+L + W+A +KW + L + +F G V+ K + Y Y +S R
Sbjct: 67 PYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKXKXKYYIEYXESTR 126
Query: 248 EERPLYLFDPKFAD--KVPTLGGEYEVPVYFREDLFSVLGNER-PDYRWVIIGPAGSGSS 304
++ PLY+FD + + K L +Y+VP +F +DLF G +R P YRW + GP SG+
Sbjct: 127 DDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVXGPPRSGTG 186
Query: 305 FHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATK 364
H+DP TSAWNA+++G K+W LFP + + D +I WF Y T+
Sbjct: 187 IHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAIT-WFNVIYPRTQ 245
Query: 365 --NW--KKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406
W + +P+E + K GE +FVP GWWH+V+NL+ +IAITQN+ S
Sbjct: 246 LPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFAS 291
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 45/232 (19%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDS-------- 245
P +PV+L+G D+W ++KW +Y+ + G PVE+ RY+D
Sbjct: 25 PGRPVILKGVADHWPCMQKWSLEYIQEIAG---CRTVPVEVG----SRYTDEEWSQTLMT 77
Query: 246 ---------VREERPL-YLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVI 295
V E R + YL + D++P L + +P Y LG+ + +
Sbjct: 78 VNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDY------CSLGDGEEEEITIN 131
Query: 296 --IGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPD----VVPPGVHPSSDGAEVACP 349
GP G+ S H DP + + G K L+ P + P H + ++V
Sbjct: 132 AWFGPQGTISPLHQDPQQN--FLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVE 189
Query: 350 VSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAIT 401
+E F F A + CI GE++F+P +WH V L+ S +++
Sbjct: 190 NPDLEKFPKFAKAPF------LSCILSPGEILFIPVKYWHYVRALDLSFSVS 235
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 45/232 (19%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDS-------- 245
P +PV+L+G D+W ++KW +Y+ + G PVE+ RY+D
Sbjct: 21 PGRPVILKGVADHWPCMQKWSLEYIQEIAG---CRTVPVEVG----SRYTDEEWSQTLMT 73
Query: 246 ---------VREERPL-YLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWV- 294
V E R + YL + D++P L + +P Y LG+ + +
Sbjct: 74 VNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDY------CSLGDGEEEEITIN 127
Query: 295 -IIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPD----VVPPGVHPSSDGAEVACP 349
GP G+ S H DP + + G K L+ P + P H + ++V
Sbjct: 128 AWFGPQGTISPLHQDPQQN--FLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVE 185
Query: 350 VSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAIT 401
+E F F A + CI GE++F+P +WH V L+ S +++
Sbjct: 186 NPDLEKFPKFAKAPF------LSCILSPGEILFIPVKYWHYVRALDLSFSVS 231
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 45/232 (19%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDS-------- 245
P +PV+L+G D+W ++KW +Y+ + G PVE+ RY+D
Sbjct: 34 PGRPVILKGVADHWPCMQKWSLEYIQEIAG---CRTVPVEVG----SRYTDEEWSQTLMT 86
Query: 246 ---------VREERPL-YLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVI 295
V E R + YL + D++P L + +P Y LG+ + +
Sbjct: 87 VNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDY------CSLGDGEEEEITIN 140
Query: 296 --IGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPD----VVPPGVHPSSDGAEVACP 349
GP G+ S H DP + + G K L+ P + P H + ++V
Sbjct: 141 AWFGPQGTISPLHQDPQQN--FLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVE 198
Query: 350 VSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAIT 401
+E F F A + CI GE++F+P +WH V L+ S +++
Sbjct: 199 NPDLEKFPKFAKAPF------LSCILSPGEILFIPVKYWHYVRALDLSFSVS 244
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 45/232 (19%)
Query: 194 PNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSDS-------- 245
P +PV+L+G D+W +KW +Y+ + G PVE+ RY+D
Sbjct: 21 PGRPVILKGVADHWPCXQKWSLEYIQEIAG---CRTVPVEVGS----RYTDEEWSQTLXT 73
Query: 246 ---------VREERPL-YLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWV- 294
V E R + YL + D++P L + +P Y LG+ + +
Sbjct: 74 VNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDY------CSLGDGEEEEITIN 127
Query: 295 -IIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPD----VVPPGVHPSSDGAEVACP 349
GP G+ S H DP + + G K L+ P + P H + ++V
Sbjct: 128 AWFGPQGTISPLHQDPQQN--FLVQVXGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVE 185
Query: 350 VSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAIT 401
+E F F A + CI GE++F+P +WH V L+ S +++
Sbjct: 186 NPDLEKFPKFAKAPF------LSCILSPGEILFIPVKYWHYVRALDLSFSVS 231
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 233 EMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGN------ 286
+MKL ++ +Y S + E+ L + +F+D L E P R+ S + N
Sbjct: 85 KMKLGDFVKYYYSGKREKVLNVISLEFSD--TRLSNLVETPKIVRK--LSWVENLWPEEC 140
Query: 287 --ERPDY-RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDG 343
ERP+ ++ ++ S + FH+D TS W ++KG K + L P +++
Sbjct: 141 VFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRP--------TNANL 192
Query: 344 AEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQN 403
C S F+G + + +C K G+ +F+P GW H V+ + +A N
Sbjct: 193 TLFECWSSSSNQNEMFFGDQVD---KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGN 249
Query: 404 YV 405
++
Sbjct: 250 FL 251
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 233 EMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGN------ 286
+MKL ++ +Y S + E+ L + +F+D L E P R+ S + N
Sbjct: 169 KMKLGDFVKYYYSGKREKVLNVISLEFSD--TRLSNLVETPKIVRK--LSWVENLWPEEC 224
Query: 287 --ERPDY-RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDG 343
ERP+ ++ ++ S + FH+D TS W ++KG K + L P +++
Sbjct: 225 VFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRP--------TNANL 276
Query: 344 AEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQN 403
C S F+G + + +C K G+ +F+P GW H V+ + +A N
Sbjct: 277 TLFECWSSSSNQNEMFFGDQVD---KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGN 333
Query: 404 YV 405
++
Sbjct: 334 FL 335
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 46 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 104
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 105 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 161
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H D + A IKG K+ ILFPPD P
Sbjct: 162 KRGWGQLTSNLLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 219
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 220 HPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 273
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 274 GITITVNF 281
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 233 EMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGN------ 286
+MKL ++ +Y S + E+ L + +F+D L E P R+ S + N
Sbjct: 96 KMKLGDFVKYYYSGKREKVLNVISLEFSD--TRLSNLVETPKIVRK--LSWVENLWPEEC 151
Query: 287 --ERPDY-RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDG 343
ERP+ ++ ++ S + FH+D TS W ++KG K + L P +++
Sbjct: 152 VFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRP--------TNANL 203
Query: 344 AEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQN 403
C S F+G + + +C K G+ +F+P GW H V+ + +A N
Sbjct: 204 TLFECWSSSSNQNEMFFGDQVD---KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGN 260
Query: 404 YV 405
++
Sbjct: 261 FL 262
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 63 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 121
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 122 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 178
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H D + A IKG K+ ILFPPD P
Sbjct: 179 KRGWGQLTSNLLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 236
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 237 HPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 290
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 291 GITITVNF 298
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 233 EMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGN------ 286
+MKL ++ +Y S + E+ L + +F+D L E P R+ S + N
Sbjct: 93 KMKLGDFVKYYYSGKREKVLNVISLEFSD--TRLSNLVETPKIVRK--LSWVENLWPEEC 148
Query: 287 --ERPDY-RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDG 343
ERP+ ++ ++ S + FH+D TS W ++KG K + L P +++
Sbjct: 149 VFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRP--------TNANL 200
Query: 344 AEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQN 403
C S F+G + + +C K G+ +F+P GW H V+ + +A N
Sbjct: 201 TLFECWSSSSNQNEMFFGDQVD---KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGN 257
Query: 404 YV 405
++
Sbjct: 258 FL 259
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 60 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 118
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 119 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 175
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H D + A IKG K+ ILFPPD P
Sbjct: 176 KRGWGQLTSNLLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 233
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 234 HPCDRHSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 287
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 288 GITITVNF 295
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 60 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 118
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 119 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 175
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H D + A IKG K+ ILFPPD P
Sbjct: 176 KRGWGQLTSNLLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 233
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 234 HPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 287
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 288 GITITVNF 295
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 99/250 (39%), Gaps = 55/250 (22%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPVEMKLEEYFRYSD----------- 244
+PV+L + ALK WD +YL G+ F+V ++ Y +
Sbjct: 60 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSV--YSASTHKFLYYDEKKXANFQNFKP 116
Query: 245 -SVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NER 288
S REE + F K D + GGE + Y ++ L +G N++
Sbjct: 117 RSNREEXKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGGKIVXDFLGFNWNWINKQ 173
Query: 289 PDYR-W-------VIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----P 335
R W ++IG G+ + H D + A IKG K+ ILFPPD P
Sbjct: 174 QGKRGWGQLTSNLLLIGXEGNVTPAHYDEQQN--FFAQIKGYKRCILFPPDQFECLYPYP 231
Query: 336 GVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-L 394
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 232 VHHPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPXYWWHHIESLL 285
Query: 395 EESIAITQNY 404
I IT N+
Sbjct: 286 NGGITITVNF 295
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 62 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 120
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 121 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 177
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H D + A IKG K+ ILFPPD P
Sbjct: 178 KRGWGQLTSNLLLIGMEGNVTPAHYD--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 235
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 236 HPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 289
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 290 GITITVNF 297
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 60 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 118
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 119 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 175
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H + A IKG K+ ILFPPD P
Sbjct: 176 KRGWGQLTSNLLLIGMEGNVTPAHY--GEQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 233
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 234 HPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 287
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 288 GITITVNF 295
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 196 KPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMKLEEYFRYS-DS 245
+PV+L + ALK WD +YL G+ F+V E K+ + + S
Sbjct: 60 EPVVLTDTNLVYPALK-WDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRS 118
Query: 246 VREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG---------------NERPD 290
REE + F K D + GGE + Y ++ L +G N++
Sbjct: 119 NREEMKFHEFVEKLQD-IQQRGGEERL--YLQQTLNDTVGRKIVMDFLGFNWNWINKQQG 175
Query: 291 YR--------WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-----PGV 337
R ++IG G+ + H + A IKG K+ ILFPPD P
Sbjct: 176 KRGWGQLTSNLLLIGMEGNVTPAHYA--EQQNFFAQIKGYKRCILFPPDQFECLYPYPVH 233
Query: 338 HPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN-LEE 396
HP ++V E F NF E + G+V+++P WWH + + L
Sbjct: 234 HPCDRQSQVDFDNPDYERFPNFQNVVG------YETVVGPGDVLYIPMYWWHHIESLLNG 287
Query: 397 SIAITQNY 404
I IT N+
Sbjct: 288 GITITVNF 295
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 292 RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVS 351
++ ++G S + FH+D TS W ++ G K + L P + S + V
Sbjct: 177 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEV- 235
Query: 352 IMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405
F+G + + +C+ K G +FVP GW H V+ ++ +A N++
Sbjct: 236 -------FFGDKVD---KCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFL 279
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 292 RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVS 351
++ ++G S + FH+D TS W ++ G K + L P + S + V
Sbjct: 268 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEV- 326
Query: 352 IMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405
F+G + + +C+ K G +FVP GW H V+ ++ +A N++
Sbjct: 327 -------FFGDKVD---KCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFL 370
>pdb|3PTR|B Chain B, Phf2 Jumonji Domain
pdb|3PU3|A Chain A, Phf2 Jumonji Domain-Nog Complex
pdb|3PU3|B Chain B, Phf2 Jumonji Domain-Nog Complex
pdb|3PU8|B Chain B, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PU8|A Chain A, Phf2 Jumonji-Nog-Fe(Ii) Complex
pdb|3PUA|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|A Chain A, Phf2 Jumonji-Nog-Ni(Ii)
pdb|3PUS|B Chain B, Phf2 Jumonji-Nog-Ni(Ii)
Length = 392
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 233 EMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPD-- 290
+MKL+E+ Y S +R L + + +F+D + E P ++ S + N PD
Sbjct: 112 KMKLKEFVDYYYSTNRKRVLNVTNLEFSDT--RMSSFVEPPDIVKK--LSWVENYWPDDA 167
Query: 291 -------YRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDG 343
++ +I S + FH+D SAW ++KG K + L P ++
Sbjct: 168 LLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRS 227
Query: 344 AEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQN 403
A + + Y +CI K G+ +F+P+GW + + + +A +
Sbjct: 228 ASNHSEMFFADQVDKCY-----------KCIVKQGQTLFIPSGWIYATLTPVDCLAFAGH 276
Query: 404 YV 405
++
Sbjct: 277 FL 278
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 257 PKFADKV-------PTLGGEYEVPVYFREDLFSVLGNERPDY-RWVIIGPAGSGSSFHMD 308
P+F ++ P + G + + RE+ ++RP ++ + G AGS + FH+D
Sbjct: 257 PRFVQEISMVNRLWPDVSGAEYIKLLQREEYLP--EDQRPKVEQFCLAGMAGSYTDFHVD 314
Query: 309 PNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFY-GATKNWK 367
+S + I+KG K + + P + ++ A P + WF + GA K
Sbjct: 315 FGGSSVYYHILKGEKIFYI----AAPTEQNFAAYQAHETSPDTTT-WFGDIANGAVKR-- 367
Query: 368 KRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405
+ K G+ + +P GW H V+ +S+ N++
Sbjct: 368 -----VVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFL 400
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 95/247 (38%), Gaps = 68/247 (27%)
Query: 195 NKPVLLEGCLDNWAALKKWDRDYLVNVCG--DVRFAVGPV-------------------- 232
KP++LEG +D KW DYL V G +V+ V V
Sbjct: 50 RKPLVLEG-IDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDFISKNFVYRTLPFDQL 108
Query: 233 -----EMKLEEYFRYSDSVREERPLYLF----DPK--FAD---KVPTLGGEYEVPVYFRE 278
E K +E+F V E+ YL DP+ AD + P L G+ + P +F+E
Sbjct: 109 VQRAAEEKHKEFF-----VSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKE 163
Query: 279 DLF--SVLGNERPDYR-WVIIGPAGSGSSFHMDPNSTSAWNAIIK--GSKKWILFPPDVV 333
+ F SV P + W H D N +I+ G K+ +LF P
Sbjct: 164 EQFFSSVFRISSPGLQLWT-----------HYDVMD----NLLIQVTGKKRVVLFSPRDA 208
Query: 334 PPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVIN 393
+ + + + F K R EC +AG+V+F+P W+H VI+
Sbjct: 209 QYLYLKGTKSEVLNIDNPDLAKYPLF------SKARRYECSLEAGDVLFIPALWFHNVIS 262
Query: 394 LEESIAI 400
E + +
Sbjct: 263 EEFGVGV 269
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 19/118 (16%)
Query: 292 RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVS 351
++ ++ G + FH+D TS W I +G K + L PP A +
Sbjct: 198 KYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPP---------------TAHNLE 242
Query: 352 IME-WFMNFYGATKNWKKRPIECI---CKAGEVIFVPNGWWHLVINLEESIAITQNYV 405
+ E W ++ R +C K G +P+GW H V +++ N++
Sbjct: 243 LYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFL 300
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 268 GEYEVPVYFREDLFSVLGN--ERPDYRWVIIGPAGSGSSFHM 307
G +PVY R++ LGN +RPDY W G++FH+
Sbjct: 655 GFLSLPVYVRDNTLLALGNNDQRPDYVW------HEGTAFHL 690
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 268 GEYEVPVYFREDLFSVLGN--ERPDYRWVIIGPAGSGSSFHM 307
G +PVY R++ LGN +RPDY W G++FH+
Sbjct: 655 GFLSLPVYVRDNTLLALGNNDQRPDYVW------HEGTAFHL 690
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 268 GEYEVPVYFREDLFSVLGN--ERPDYRWVIIGPAGSGSSFHM 307
G +PVY R++ LGN +RPDY W G++FH+
Sbjct: 655 GFLSLPVYVRDNTLLALGNNDQRPDYVW------HEGTAFHL 690
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 21/90 (23%)
Query: 206 NWAALKKWDRDYLVNVCGD-----------------VRFAVGP-VEMKLEEYFRYSDSVR 247
NW WD Y + VCGD V +GP + LE R
Sbjct: 130 NWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGLR---GTH 186
Query: 248 EERPLYLFDPKFADKVPTLGGEYEVPVYFR 277
E + P A + P + G+ + Y R
Sbjct: 187 MENVYDFYKPNLASEYPIVDGKLSIQCYLR 216
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 53
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 66 TLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNL 107
+L DEL++ + L +L ++ V K +Y A+ E LW+ L
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 231 PVEMKLEEYFRYSDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLG 285
P+EM ++E V E+ + + D +VP L E + YF+E L +G
Sbjct: 221 PIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEEQSIVKYFKERLHLPIG 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,047,905
Number of Sequences: 62578
Number of extensions: 573260
Number of successful extensions: 1265
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 34
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)