Query 042108
Match_columns 406
No_of_seqs 376 out of 1649
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2130 Phosphatidylserine-spe 100.0 1.9E-67 4.1E-72 492.5 15.9 285 90-406 1-298 (407)
2 PF13621 Cupin_8: Cupin-like d 100.0 1.6E-40 3.5E-45 314.7 12.0 212 184-406 1-247 (251)
3 KOG2132 Uncharacterized conser 100.0 1.8E-31 3.9E-36 253.0 5.5 218 174-400 127-355 (355)
4 KOG2131 Uncharacterized conser 99.9 9.3E-28 2E-32 229.9 8.7 221 173-405 27-302 (427)
5 KOG2508 Predicted phospholipas 99.9 5.3E-24 1.1E-28 203.6 12.1 221 176-404 24-307 (437)
6 PF08007 Cupin_4: Cupin superf 99.6 9E-17 1.9E-21 158.7 5.2 97 289-405 113-210 (319)
7 PF02373 JmjC: JmjC domain, hy 99.5 6.8E-15 1.5E-19 123.0 5.0 110 293-404 1-114 (114)
8 COG2850 Uncharacterized conser 99.5 1.1E-14 2.3E-19 141.5 7.0 190 178-405 11-213 (383)
9 KOG2997 F-box protein FBX9 [Ge 99.4 3E-13 6.6E-18 128.9 4.1 101 60-160 103-218 (366)
10 PF12937 F-box-like: F-box-lik 99.2 5.5E-12 1.2E-16 89.0 3.2 46 65-110 2-47 (47)
11 KOG3706 Uncharacterized conser 99.2 7.3E-12 1.6E-16 124.6 3.4 88 290-395 317-405 (629)
12 KOG1356 Putative transcription 99.1 2.6E-11 5.7E-16 127.9 4.6 220 183-406 529-834 (889)
13 KOG1633 F-box protein JEMMA an 99.1 1E-10 2.2E-15 125.8 7.6 206 186-405 9-230 (776)
14 smart00256 FBOX A Receptor for 98.6 4.6E-08 1E-12 66.2 4.5 40 67-106 1-40 (41)
15 PF00646 F-box: F-box domain; 98.5 4.5E-08 9.8E-13 69.0 2.4 45 64-108 3-47 (48)
16 KOG2120 SCF ubiquitin ligase, 97.8 2.3E-05 5E-10 75.5 4.2 47 63-109 97-143 (419)
17 COG2140 Thermophilic glucose-6 97.4 0.00088 1.9E-08 61.6 8.9 64 297-397 87-152 (209)
18 KOG3926 F-box proteins [Amino 97.4 0.0003 6.4E-09 66.5 5.7 113 63-191 201-330 (332)
19 KOG0281 Beta-TrCP (transducin 97.2 0.00028 6.1E-09 68.8 3.7 49 65-113 76-128 (499)
20 smart00558 JmjC A domain famil 97.1 0.00057 1.2E-08 49.9 3.8 44 277-322 11-56 (57)
21 PF00190 Cupin_1: Cupin; Inte 96.8 0.0042 9.1E-08 54.2 7.3 72 298-402 42-117 (144)
22 PF06881 Elongin_A: RNA polyme 96.8 0.0024 5.2E-08 53.2 5.4 65 62-128 2-71 (109)
23 TIGR03037 anthran_nbaC 3-hydro 96.5 0.013 2.8E-07 51.9 7.9 73 291-402 29-101 (159)
24 PRK13264 3-hydroxyanthranilate 96.3 0.018 3.9E-07 51.9 7.7 74 290-402 34-107 (177)
25 PF06560 GPI: Glucose-6-phosph 96.1 0.017 3.7E-07 52.4 6.9 79 296-406 62-145 (182)
26 TIGR03404 bicupin_oxalic bicup 95.9 0.035 7.7E-07 56.1 8.6 62 298-396 253-314 (367)
27 PF07883 Cupin_2: Cupin domain 95.8 0.044 9.5E-07 41.0 7.0 58 298-397 6-63 (71)
28 PRK04190 glucose-6-phosphate i 95.6 0.079 1.7E-06 48.6 9.2 59 303-397 87-146 (191)
29 PF06052 3-HAO: 3-hydroxyanthr 95.4 0.052 1.1E-06 47.3 6.7 73 290-401 33-105 (151)
30 KOG0274 Cdc4 and related F-box 94.9 0.013 2.8E-07 62.1 2.1 51 63-113 107-157 (537)
31 COG1917 Uncharacterized conser 94.7 0.18 3.8E-06 43.0 8.2 66 293-401 46-114 (131)
32 KOG4341 F-box protein containi 94.5 0.02 4.4E-07 57.8 2.0 48 66-113 74-121 (483)
33 KOG2132 Uncharacterized conser 94.4 0.012 2.7E-07 57.3 0.2 99 296-398 180-280 (355)
34 TIGR03404 bicupin_oxalic bicup 94.3 0.26 5.6E-06 49.9 9.6 65 294-397 72-136 (367)
35 COG0662 {ManC} Mannose-6-phosp 94.2 0.23 5E-06 42.3 7.7 26 371-396 75-100 (127)
36 smart00835 Cupin_1 Cupin. This 93.2 0.49 1.1E-05 41.2 8.2 63 298-396 38-100 (146)
37 COG4101 Predicted mannose-6-ph 92.6 0.13 2.9E-06 43.0 3.4 25 371-395 88-112 (142)
38 PRK13290 ectC L-ectoine syntha 92.4 0.81 1.8E-05 39.0 8.2 31 371-401 75-105 (125)
39 PF05523 FdtA: WxcM-like, C-te 92.2 0.52 1.1E-05 40.5 6.8 68 298-404 41-109 (131)
40 TIGR02272 gentisate_1_2 gentis 92.1 0.43 9.2E-06 47.6 7.0 62 298-401 89-150 (335)
41 PF02041 Auxin_BP: Auxin bindi 92.0 0.89 1.9E-05 39.7 7.8 71 292-396 46-116 (167)
42 PF13013 F-box-like_2: F-box-l 90.8 0.29 6.3E-06 40.7 3.7 40 60-100 19-58 (109)
43 PLN00212 glutelin; Provisional 89.8 1.6 3.6E-05 45.7 9.0 66 299-400 357-422 (493)
44 TIGR01221 rmlC dTDP-4-dehydror 89.2 3 6.5E-05 37.8 9.2 77 291-397 45-124 (176)
45 KOG4408 Putative Mg2+ and Co2+ 86.2 0.11 2.3E-06 51.1 -2.2 49 64-112 8-56 (386)
46 TIGR02466 conserved hypothetic 85.0 5.3 0.00011 37.0 8.5 97 291-404 97-198 (201)
47 KOG0958 DNA damage-responsive 84.8 0.86 1.9E-05 48.7 3.5 107 289-406 172-294 (690)
48 PF13759 2OG-FeII_Oxy_5: Putat 84.7 3.4 7.3E-05 33.5 6.4 96 292-403 2-101 (101)
49 COG1898 RfbC dTDP-4-dehydrorha 83.4 10 0.00022 34.2 9.3 78 291-398 46-125 (173)
50 PRK15457 ethanolamine utilizat 83.3 6.9 0.00015 36.9 8.4 54 299-396 165-218 (233)
51 TIGR01479 GMP_PMI mannose-1-ph 82.6 4.4 9.5E-05 42.4 7.7 26 371-396 415-440 (468)
52 PF02311 AraC_binding: AraC-li 79.9 10 0.00022 31.0 7.8 53 300-395 13-65 (136)
53 PRK09943 DNA-binding transcrip 79.2 13 0.00027 33.6 8.7 26 371-396 146-171 (185)
54 PLN03215 ascorbic acid mannose 76.4 2.8 6.1E-05 42.4 3.8 37 63-99 3-40 (373)
55 PF05899 Cupin_3: Protein of u 75.6 1.9 4E-05 33.1 1.8 17 371-387 44-60 (74)
56 PF01050 MannoseP_isomer: Mann 75.5 3.5 7.5E-05 36.4 3.7 26 371-396 102-127 (151)
57 KOG3995 3-hydroxyanthranilate 74.8 7.4 0.00016 36.0 5.6 72 291-401 34-105 (279)
58 PRK15460 cpsB mannose-1-phosph 72.3 14 0.0003 38.9 7.8 26 371-396 424-449 (478)
59 PF00908 dTDP_sugar_isom: dTDP 71.0 26 0.00057 31.6 8.4 77 291-397 44-124 (176)
60 PF09313 DUF1971: Domain of un 70.8 35 0.00077 26.8 8.0 61 306-400 19-79 (82)
61 PRK15131 mannose-6-phosphate i 68.9 5.4 0.00012 40.7 3.9 31 371-402 237-267 (389)
62 COG3450 Predicted enzyme of th 68.3 4.3 9.3E-05 34.2 2.5 25 371-395 82-106 (116)
63 PF09372 PRANC: PRANC domain; 67.1 5.1 0.00011 32.2 2.7 26 62-87 70-95 (97)
64 COG1482 ManA Phosphomannose is 67.0 6.2 0.00013 39.0 3.7 32 371-403 158-189 (312)
65 PRK11171 hypothetical protein; 66.5 30 0.00064 33.4 8.3 26 371-396 101-126 (266)
66 TIGR03214 ura-cupin putative a 66.5 6.4 0.00014 37.8 3.7 26 371-396 218-243 (260)
67 PF07385 DUF1498: Protein of u 65.3 16 0.00035 34.2 5.8 91 293-399 90-182 (225)
68 TIGR03214 ura-cupin putative a 65.2 46 0.001 31.9 9.3 25 372-396 99-123 (260)
69 PRK13502 transcriptional activ 63.6 36 0.00078 32.4 8.4 27 371-397 56-82 (282)
70 PF06249 EutQ: Ethanolamine ut 62.2 6.5 0.00014 34.7 2.6 17 371-387 113-129 (152)
71 KOG1633 F-box protein JEMMA an 60.5 4 8.6E-05 45.2 1.1 96 298-405 481-582 (776)
72 TIGR02272 gentisate_1_2 gentis 59.1 47 0.001 33.2 8.3 63 296-401 256-318 (335)
73 PF05995 CDO_I: Cysteine dioxy 57.5 70 0.0015 28.7 8.5 81 293-402 78-159 (175)
74 PF03079 ARD: ARD/ARD' family; 57.0 20 0.00044 31.8 4.8 34 371-404 115-149 (157)
75 TIGR00218 manA mannose-6-phosp 56.8 8.1 0.00018 37.9 2.5 20 371-390 151-170 (302)
76 COG4766 EutQ Ethanolamine util 56.0 8.3 0.00018 33.9 2.1 17 371-387 136-152 (176)
77 COG1791 Uncharacterized conser 55.3 35 0.00076 30.7 5.9 51 305-395 92-142 (181)
78 COG5285 Protein involved in bi 53.4 27 0.00059 34.1 5.3 37 370-406 192-231 (299)
79 PLN00212 glutelin; Provisional 52.6 71 0.0015 33.7 8.7 90 294-397 85-174 (493)
80 COG3435 Gentisate 1,2-dioxygen 50.7 30 0.00066 33.9 5.2 54 299-394 101-154 (351)
81 KOG2107 Uncharacterized conser 48.9 20 0.00042 32.0 3.3 26 370-395 115-140 (179)
82 PLN02288 mannose-6-phosphate i 47.2 15 0.00032 37.7 2.6 23 372-394 252-274 (394)
83 COG3822 ABC-type sugar transpo 42.3 94 0.002 28.5 6.6 31 370-400 152-182 (225)
84 PRK10296 DNA-binding transcrip 42.2 1.1E+02 0.0025 28.9 7.9 24 371-394 61-84 (278)
85 COG3435 Gentisate 1,2-dioxygen 41.8 96 0.0021 30.6 7.0 64 296-402 267-331 (351)
86 TIGR03027 pepcterm_export puta 41.7 16 0.00036 32.3 1.8 18 371-388 148-165 (165)
87 PRK13501 transcriptional activ 38.5 37 0.00079 32.7 3.9 26 371-396 56-81 (290)
88 PRK11171 hypothetical protein; 36.4 38 0.00083 32.6 3.6 26 371-396 223-248 (266)
89 PHA02989 ankyrin repeat protei 35.7 34 0.00075 35.7 3.4 36 62-97 457-492 (494)
90 PF12852 Cupin_6: Cupin 34.9 37 0.0008 30.4 3.0 25 372-396 56-80 (186)
91 PRK10371 DNA-binding transcrip 30.8 1.8E+02 0.0038 28.4 7.3 26 371-396 64-89 (302)
92 COG4297 Uncharacterized protei 30.8 2.5E+02 0.0053 24.5 7.0 58 300-395 52-109 (163)
93 PF11699 CENP-C_C: Mif2/CENP-C 30.6 83 0.0018 24.9 4.0 27 371-397 51-77 (85)
94 KOG2508 Predicted phospholipas 30.1 43 0.00094 33.7 2.7 27 369-395 359-385 (437)
95 PRK12335 tellurite resistance 30.0 1.6E+02 0.0034 28.4 6.7 65 306-404 27-91 (287)
96 PRK13500 transcriptional activ 29.9 67 0.0014 31.4 4.1 26 371-396 86-111 (312)
97 TIGR03028 EpsE polysaccharide 29.6 30 0.00064 32.7 1.5 15 374-388 225-239 (239)
98 PHA03100 ankyrin repeat protei 28.9 41 0.0009 34.6 2.6 30 63-92 447-476 (480)
99 PF12973 Cupin_7: ChrR Cupin-l 26.6 79 0.0017 24.8 3.3 26 374-399 61-86 (91)
100 PF01238 PMI_typeI: Phosphoman 26.1 33 0.00072 34.8 1.3 23 372-394 251-273 (373)
101 PRK13503 transcriptional activ 23.6 1.8E+02 0.0038 27.4 5.7 25 372-396 54-78 (278)
102 KOG1246 DNA-binding protein ju 21.6 65 0.0014 36.7 2.6 113 291-406 330-450 (904)
103 PRK05467 Fe(II)-dependent oxyg 21.1 1.4E+02 0.003 28.2 4.2 31 371-401 141-171 (226)
104 PHA02875 ankyrin repeat protei 20.0 51 0.0011 33.3 1.2 26 62-87 385-410 (413)
No 1
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-67 Score=492.48 Aligned_cols=285 Identities=45% Similarity=0.885 Sum_probs=262.3
Q ss_pred HhHHHHHhcCChhHHHHHHHhhccCCcccCCchHHHHhhhccCCccCCCccccccceecCccchhhhhhhhhhcccCCcC
Q 042108 90 VSKSFYVFANHEPLWRNLALDNLKGEFMFNGSWKSTFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPE 169 (406)
Q Consensus 90 ~~r~~y~~~~~d~lWr~~~~~~~~~~~~~~gsWr~t~~~~~~~~~~~~~~~~~~~~~~~~~~sd~l~~~~~c~~~~~~~~ 169 (406)
|+..+|.+|+++.+||.+++++..+.+ + .+ +||.||+.|+|+...+.+.
T Consensus 1 vs~~~y~~~n~~~~kr~~~~kr~arpe----------l--------------------~~-~~~w~~~~y~e~f~~~~~~ 49 (407)
T KOG2130|consen 1 VSSSMYILCNHEPLKRSLELKRKARPE----------L--------------------YK-MSDWLYKRYYESFTLLDPF 49 (407)
T ss_pred CccceeeecCcchHHHHHHHHHhcChh----------h--------------------hh-hhhHHHHHHHHhccccCcc
Confidence 456789999999999999987643322 1 11 7999999999999998888
Q ss_pred cccCCCccccCCCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEcc------eecchHHHHHhh
Q 042108 170 WLERDNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGP------VEMKLEEYFRYS 243 (406)
Q Consensus 170 ~~~~~~I~r~~~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~~------~~~~l~~f~~~~ 243 (406)
+....++.|..++|.++|.++|.++++||||+|++..|||.++||+++|.++|++++|.++. ++|+|+.|++||
T Consensus 50 ~~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT~drLskkyrnq~Fkcged~~gnsv~MKmkyY~~Ym 129 (407)
T KOG2130|consen 50 FFDNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWTLDRLSKKYRNQKFKCGEDNNGNSVKMKMKYYIEYM 129 (407)
T ss_pred ccccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhhHHHHHHHhcCccccccccCCCcceeeeHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999974 569999999999
Q ss_pred hccCCCCCeeecCcccccccC--ccccCCCCCCcChhhhhhhcCCC-CCCcceeEeccCCCCCcceecCCCCcceEEEEE
Q 042108 244 DSVREERPLYLFDPKFADKVP--TLGGEYEVPVYFREDLFSVLGNE-RPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIK 320 (406)
Q Consensus 244 ~~~~~~~~~Yl~d~~~~~~~p--~L~~d~~~P~~f~~d~~~~l~~~-rp~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~ 320 (406)
+++.|+.|+|+||..|.++.| .|.+||.||.+|++|+|..+|++ ||++||++|||++|||.+|+||..|||||++|+
T Consensus 130 ~~~RddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~ 209 (407)
T KOG2130|consen 130 KSTRDDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQ 209 (407)
T ss_pred hccccCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHHhcCcccCCCceeEEecCCCCCceeEECCcchHHHHHHhh
Confidence 999999999999999999999 89999999999999999999987 999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhh----cCCCCcEEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 321 GSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATK----NWKKRPIECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 321 G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~----~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
|+|+|.||||...+++|.|..++.. ..|+++.+|+..+|+..+ ....+++||+|.|||++|||+||||.|+|+|+
T Consensus 210 GhKrW~LfPp~~p~~lvkv~~~e~g-~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~ 288 (407)
T KOG2130|consen 210 GHKRWVLFPPGTPPELVKVTVDEGG-KQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEP 288 (407)
T ss_pred ccceeEEcCCCCCCCceeecccccC-CCCcceechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccCc
Confidence 9999999999999999998877655 689999999999998876 22357899999999999999999999999999
Q ss_pred cEEEeeeccC
Q 042108 397 SIAITQNYVS 406 (406)
Q Consensus 397 sIavt~nFv~ 406 (406)
+|||||||+|
T Consensus 289 TIAiTqNf~s 298 (407)
T KOG2130|consen 289 TIAITQNFAS 298 (407)
T ss_pred eeeeeecccc
Confidence 9999999986
No 2
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=100.00 E-value=1.6e-40 Score=314.71 Aligned_cols=212 Identities=33% Similarity=0.659 Sum_probs=162.2
Q ss_pred HHHHHHHhcCCCCCEEEecCCCcCcccCCCC-----HHHHHHHhCCceEEEc----------------------ceecch
Q 042108 184 VEEFVSSFEEPNKPVLLEGCLDNWAALKKWD-----RDYLVNVCGDVRFAVG----------------------PVEMKL 236 (406)
Q Consensus 184 ~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt-----~~~L~~~~gd~~v~v~----------------------~~~~~l 236 (406)
+++|.++|+.+++||||+|++.+|+|+++|+ ++||.+++|+..|.+. ...|+|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF 80 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence 5899999999999999999999999999999 6999999999999873 147999
Q ss_pred HHHHHhhhccC---CCCCeeecCcccccccCccccCCCCCCcChhhhhhhcCCCCCCcceeEeccCCCCCcceecCCCCc
Q 042108 237 EEYFRYSDSVR---EERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTS 313 (406)
Q Consensus 237 ~~f~~~~~~~~---~~~~~Yl~d~~~~~~~p~L~~d~~~P~~f~~d~~~~l~~~rp~~~~l~iG~~gs~t~~H~D~~~t~ 313 (406)
++|++++.... ....+|+.+..+.+.+|.|.++..+| +..+++. . .+...+||||++|++|++|+|+.+
T Consensus 81 ~~f~~~~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~~~~~--~~~~~~~---~-~~~~~~l~ig~~gs~t~lH~D~~~-- 152 (251)
T PF13621_consen 81 RDFLDRLRANRDQRDKPYYYLQNWNLFEDFPELREDNDLP--FPPELFG---K-EPQSSNLWIGPPGSFTPLHYDPSH-- 152 (251)
T ss_dssp HHHHHHHHHSCHSTSSSEEEEEEETHHHHSHHHHCCS-CH--HHHCHSC---C-HCCEEEEEEE-TTEEEEEEE-SSE--
T ss_pred HHHHHHHHhcccccCCceEEEecCchHHHhhhhhhccccc--cchhhcc---c-CccccEEEEeCCCceeeeeECchh--
Confidence 99999988764 23568998888888889998875444 3334332 1 244678999999999999999965
Q ss_pred ceEEEEEeEEEEEEeCCCCCCCCcccCCC--CCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeee
Q 042108 314 AWNAIIKGSKKWILFPPDVVPPGVHPSSD--GAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLV 391 (406)
Q Consensus 314 ~~~~qi~G~K~w~L~pP~~~~~~l~p~~d--~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V 391 (406)
||++||+|+|+|+||||++.. .+|+... +....+.+++.+++.+.||.+++. ++++|+|+|||+||||+||||+|
T Consensus 153 n~~~~i~G~K~~~L~pP~~~~-~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~--~~~~~~l~pGD~LfiP~gWwH~V 229 (251)
T PF13621_consen 153 NLLAQIRGRKRWILFPPDDSP-NLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKA--PPYEVVLEPGDVLFIPPGWWHQV 229 (251)
T ss_dssp EEEEEEESEEEEEEE-GGGGG-GCTBETTTST-TCBBSS-TTS--TTT-CGGGG----EEEEEEETT-EEEE-TT-EEEE
T ss_pred hhhhccCCCEEEEEECCcccc-ccccceecccccceeeeeccChhhhhhhhhccC--ceeEEEECCCeEEEECCCCeEEE
Confidence 999999999999999999987 7777542 223456677777778899998864 77999999999999999999999
Q ss_pred eec--Cc-cEEEeeeccC
Q 042108 392 INL--EE-SIAITQNYVS 406 (406)
Q Consensus 392 ~nl--~~-sIavt~nFv~ 406 (406)
+|+ ++ |||||.+|.+
T Consensus 230 ~~~~~~~~sisvn~w~~~ 247 (251)
T PF13621_consen 230 ENLSDDDLSISVNYWFRT 247 (251)
T ss_dssp EESTTSSCEEEEEEEEES
T ss_pred EEcCCCCeEEEEEEEecc
Confidence 999 76 9999999863
No 3
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-31 Score=253.01 Aligned_cols=218 Identities=25% Similarity=0.416 Sum_probs=185.9
Q ss_pred CCccccCCCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEcc-----------eecchHHHHHh
Q 042108 174 DNIARKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGP-----------VEMKLEEYFRY 242 (406)
Q Consensus 174 ~~I~r~~~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~~-----------~~~~l~~f~~~ 242 (406)
..+++.+.++.++|+..++.+++|+|++|...+||+.++|+++||.+..|.+.|.++. ..|++.+|+..
T Consensus 127 ~~~~~~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~l~~l~~va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R 206 (355)
T KOG2132|consen 127 IDVPGEDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWSLGYLQQVAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKR 206 (355)
T ss_pred hhhccccchHHHHHHHHhhcCCCceEEecccccchHhhhcchhHHHhcccceeeeeecccccchhHHHhhhHHHhhhhhh
Confidence 4455667899999999999999999999999999999999999999999999988763 34677777775
Q ss_pred hhccCCCCCeeecCcccccccCccccCCCCCCcChhhhhhhcCCCCCCcceeEeccCCCCCcceecCCCCcceEEEEEeE
Q 042108 243 SDSVREERPLYLFDPKFADKVPTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGS 322 (406)
Q Consensus 243 ~~~~~~~~~~Yl~d~~~~~~~p~L~~d~~~P~~f~~d~~~~l~~~rp~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~ 322 (406)
+.......++|+.++.+.++.|+++.|+.+|++..-..|+ .+-..++.|+||+|++|++|.|+.+ |+.+|+.|+
T Consensus 207 ~~~~~p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~----~~~v~~~~w~GpaGtV~pih~dp~h--Ni~~qv~G~ 280 (355)
T KOG2132|consen 207 CILFEPRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFE----NEVVDINAWIGPAGTVLPIHMDPWH--NILSQVFGR 280 (355)
T ss_pred hhcCCccccchhhhhhhhccchhhhhccCCCceeecCCCC----ccccceeEEeccCCceecccccccc--ceeeeeecc
Confidence 5554444688999999999999999999999886432221 1234678999999999999999997 999999999
Q ss_pred EEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEE
Q 042108 323 KKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAI 400 (406)
Q Consensus 323 K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIav 400 (406)
|+|+|+||..+. .+||.+..-.-+|.|++..++++.||+++++ +.++++|+|||+||||.-|||.|++++.|+++
T Consensus 281 k~i~l~~p~~s~-~lyP~d~~~~~tsqvdvenPdlk~fp~~~k~--~~l~~lL~pGe~L~iP~kwwhyvrs~d~s~s~ 355 (355)
T KOG2132|consen 281 KRIRLYPPEDSG-ALYPTDTYLLETSQVDVENPDLKAFPKFAKA--RFLDCLLEPGEALFIPPKWWHYVRSLDKSFSV 355 (355)
T ss_pred eEEEEecCcccC-CCCCccchhhcccccccCCCChhhhhHHHHH--HHHHHhcCCchhccccHHHhhhhhhccccccC
Confidence 999999999987 8999765433388888889999999999864 66899999999999999999999999998764
No 4
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.94 E-value=9.3e-28 Score=229.86 Aligned_cols=221 Identities=24% Similarity=0.417 Sum_probs=153.5
Q ss_pred CCCccccCC--CCHHHHHHHhcCCCCCEEEecCCCcCccc----CCCC-------HHHHHHHhCCceEEEcc--------
Q 042108 173 RDNIARKKC--ISVEEFVSSFEEPNKPVLLEGCLDNWAAL----KKWD-------RDYLVNVCGDVRFAVGP-------- 231 (406)
Q Consensus 173 ~~~I~r~~~--ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~----~~Wt-------~~~L~~~~gd~~v~v~~-------- 231 (406)
+..|+|+.. ++.+.|.+.|...+.||+|.++..+|++. ..|. +..+...|+...|..++
T Consensus 27 r~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~~~ 106 (427)
T KOG2131|consen 27 RPCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLCDL 106 (427)
T ss_pred hhhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCcccccccc
Confidence 456777754 88899999999999999999999999987 3331 22222223322222210
Q ss_pred --------eecchHHHHHhhhcc------------------------CCCCCeeecCcccccccCccccCCCCCCcChhh
Q 042108 232 --------VEMKLEEYFRYSDSV------------------------REERPLYLFDPKFADKVPTLGGEYEVPVYFRED 279 (406)
Q Consensus 232 --------~~~~l~~f~~~~~~~------------------------~~~~~~Yl~d~~~~~~~p~L~~d~~~P~~f~~d 279 (406)
..+++.+|+.-..+. ....++|+.|+++...++. ..-|..|++|+.|
T Consensus 107 s~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDwHL~~~~d~-~~~~~~pd~F~~d 185 (427)
T KOG2131|consen 107 SLFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDWHLYRFLDN-DFPYWTPDLFAKD 185 (427)
T ss_pred ccCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccchheeeecCc-ccccccchhhhhc
Confidence 123333333221111 1123678778777666662 3457889999998
Q ss_pred hhhhcCC--CCCCcceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhh
Q 042108 280 LFSVLGN--ERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFM 357 (406)
Q Consensus 280 ~~~~l~~--~rp~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~ 357 (406)
+.+.... +..++|.+++||+||.|++|-|..++..|.+.|.|+|+|.++||++.. .++...+ + -|.++..
T Consensus 186 wlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~-~l~dr~g--n--lp~~~~~--- 257 (427)
T KOG2131|consen 186 WLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQ-TLADRYG--N--LPLPSWI--- 257 (427)
T ss_pred ccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhh-hhhhhcc--C--cCCcccc---
Confidence 8764432 478899999999999999999999999999999999999999999865 3433211 1 1111111
Q ss_pred hhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeecc
Q 042108 358 NFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405 (406)
Q Consensus 358 ~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv 405 (406)
+.+.....+.++++++|||++|||+||.|||.||+++||||+||+
T Consensus 258 ---~~ld~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~ 302 (427)
T KOG2131|consen 258 ---TKLDLFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWC 302 (427)
T ss_pred ---ccccccccchhhhhccCCceeeccCccccccccccceeeeccccc
Confidence 111111246689999999999999999999999999999999997
No 5
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=99.91 E-value=5.3e-24 Score=203.64 Aligned_cols=221 Identities=27% Similarity=0.496 Sum_probs=158.1
Q ss_pred ccccC-CCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCH-HHHHHHhCCceEEEc-------------c---------
Q 042108 176 IARKK-CISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDR-DYLVNVCGDVRFAVG-------------P--------- 231 (406)
Q Consensus 176 I~r~~-~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~-~~L~~~~gd~~v~v~-------------~--------- 231 (406)
|.+.+ .+|+-+|.++|+.+|+||||+++..+|||+++|+. +||++..||..|.|. +
T Consensus 24 v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd~vvsvaitPngyadgav~~g~e~f~~pae 103 (437)
T KOG2508|consen 24 VNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGDIVVSVAITPNGYADGAVMSGNEMFIKPAE 103 (437)
T ss_pred cccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccCeEEEEEeCCCCccccccccCcceeechhh
Confidence 44443 57899999999999999999999999999999986 599999999998874 1
Q ss_pred eecchHHHHHhhhccCCC--CCeeecCc--ccccccCccccCCCCCC-cChhhhhhhcCCCCCCcceeEeccCCCCCcce
Q 042108 232 VEMKLEEYFRYSDSVREE--RPLYLFDP--KFADKVPTLGGEYEVPV-YFREDLFSVLGNERPDYRWVIIGPAGSGSSFH 306 (406)
Q Consensus 232 ~~~~l~~f~~~~~~~~~~--~~~Yl~d~--~~~~~~p~L~~d~~~P~-~f~~d~~~~l~~~rp~~~~l~iG~~gs~t~~H 306 (406)
++|++.+-+..+... ++ ..+|+.+. ++...+|.+..|...-+ .|....|. ..|+..+||||...++|++|
T Consensus 104 ~KlklsevL~vl~~~-~~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa~eafg----k~PdavNlWiG~~~avTSlH 178 (437)
T KOG2508|consen 104 QKLKLSEVLYVLTQY-DESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWAPEAFG----KVPDAVNLWIGKSEAVTSLH 178 (437)
T ss_pred hhccchhhheehhcc-cCCCceeehhhhcccccccccccccccccccccccHHHhC----CChhheeeeecccccccccc
Confidence 223333333333222 22 45777643 45667777777765522 24444443 46788999999999999999
Q ss_pred ecCCCCcceEEEEEeEEEEEEeCCCCCC---CCcccCC-------CCC---c--ccCCCchhh-hh--------------
Q 042108 307 MDPNSTSAWNAIIKGSKKWILFPPDVVP---PGVHPSS-------DGA---E--VACPVSIME-WF-------------- 356 (406)
Q Consensus 307 ~D~~~t~~~~~qi~G~K~w~L~pP~~~~---~~l~p~~-------d~~---~--v~sp~~~~~-w~-------------- 356 (406)
+|+++ |++|+|.|.|+|+|+||++.+ .++||.. ++. + .+.+..+++ |+
T Consensus 179 kDhyE--NlYaViSGeKhFvlipP~d~~~lp~eiyp~g~ysy~~e~g~fk~e~~dEe~~~~a~~~~svd~~~s~~~~a~~ 256 (437)
T KOG2508|consen 179 KDHYE--NLYAVISGEKHFVLIPPDDANQLPLEIYPNGLYSYEGEDGPFKSEGLDEEDAAIAKTWFSVDPIGSPKELAVP 256 (437)
T ss_pred ccccc--ceEEEEeccceEEEeCcccccccceeecCCcceeeecCCCceeecccchhhhhhcceeeeecccCCHHHhccc
Confidence 99999 999999999999999999964 2344432 111 1 122222222 32
Q ss_pred hhhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeeeeec----CccEEEeeec
Q 042108 357 MNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINL----EESIAITQNY 404 (406)
Q Consensus 357 ~~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl----~~sIavt~nF 404 (406)
..++|.+.. ...+..+.+.+|+++|.|..|.|+|-.. +.+|+||..+
T Consensus 257 ~~k~~l~~~-~~k~~~~rv~a~~i~~lp~~w~h~~sq~~gd~~~~Iavn~~~ 307 (437)
T KOG2508|consen 257 QEKIPLLEA-EYKPEMDRVLAGQILYLPEDWFHHVSQVGGDPESDIAVNEWY 307 (437)
T ss_pred hhhCccccc-cccceeeeeeccccccChhhhhhhccccCCCccceeEEeeec
Confidence 234444432 2456788999999999999999999888 6799998754
No 6
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=99.65 E-value=9e-17 Score=158.72 Aligned_cols=97 Identities=24% Similarity=0.548 Sum_probs=65.4
Q ss_pred CCcceeEeccCC-CCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCC
Q 042108 289 PDYRWVIIGPAG-SGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWK 367 (406)
Q Consensus 289 p~~~~l~iG~~g-s~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~ 367 (406)
+...+++++++| .|...|+|.++ ++.+|+.|+|+|.++++.......+...+ . .....+
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~d--vfvlQ~~G~K~W~l~~~~~~~~~~~~~~~-------~-------~~~~~~---- 172 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHD--VFVLQLEGRKRWRLYPPPDEPAPLYSDQP-------F-------KQLEEF---- 172 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSE--EEEEEEES-EEEEEE-SCCCTTTSSCE---------T-------TTCG------
T ss_pred ccceEEEecCCCCCCccCEECCcc--cEEEECCceeEEEECCCCcccccccCCCC-------c-------cccccC----
Confidence 456789999988 58999999998 99999999999999995543312221110 0 000111
Q ss_pred CCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeecc
Q 042108 368 KRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405 (406)
Q Consensus 368 ~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv 405 (406)
....+++|+|||+||||.||||.+.+.+.|+.+|..|.
T Consensus 173 ~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~ 210 (319)
T PF08007_consen 173 EPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFR 210 (319)
T ss_dssp STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEEC
T ss_pred ceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeee
Confidence 24479999999999999999999999999999998864
No 7
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.53 E-value=6.8e-15 Score=123.02 Aligned_cols=110 Identities=26% Similarity=0.446 Sum_probs=69.0
Q ss_pred eeEeccCCCCCcceecCCCCc-ceEEEEEeEEEEEEeCCCCCCCCcccC-CCCCcccCCCchhhhhhh-hhh-hhhcCCC
Q 042108 293 WVIIGPAGSGSSFHMDPNSTS-AWNAIIKGSKKWILFPPDVVPPGVHPS-SDGAEVACPVSIMEWFMN-FYG-ATKNWKK 368 (406)
Q Consensus 293 ~l~iG~~gs~t~~H~D~~~t~-~~~~qi~G~K~w~L~pP~~~~~~l~p~-~d~~~v~sp~~~~~w~~~-~~p-~~~~~~~ 368 (406)
||+||.++|.|++|.|.+.+. .++....|.|.|.++||.+.. .+.-. .+......|.. ..+... .-| .+.+.+.
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~l~~~gi 78 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDAD-KFEKFLRSKESQNCPQF-LDHKNIFVSPEQLKKAGI 78 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHH-HHHHHHHHHHHHHSTTG-GCTGGEEEGHHHHHHTTS
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhh-hHHHHHhhccccccccc-ccccccccceeeeeccCc
Confidence 689999999999999999987 466777889999999999754 11100 00000000000 011110 011 1334456
Q ss_pred CcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeec
Q 042108 369 RPIECICKAGEVIFVPNGWWHLVINLEESIAITQNY 404 (406)
Q Consensus 369 ~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nF 404 (406)
+.+.++++|||+++||+||+|+|.|++.||++++||
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 789999999999999999999999999999999998
No 8
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.1e-14 Score=141.54 Aligned_cols=190 Identities=17% Similarity=0.305 Sum_probs=117.1
Q ss_pred ccCCCCHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEcc------eecc-----hHHHHHhhhcc
Q 042108 178 RKKCISVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGP------VEMK-----LEEYFRYSDSV 246 (406)
Q Consensus 178 r~~~ls~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~~------~~~~-----l~~f~~~~~~~ 246 (406)
-..++|+++|++.|+. +||+||+++..+. ....+.+.|.+.+-...|...- -.|. |.++ ++....
T Consensus 11 l~~glt~~~FL~~YWq-kKPlliR~a~p~~--~~p~~pdeLa~La~~edV~srLV~~~~~~~w~~~~gPfe~~-d~~~~p 86 (383)
T COG2850 11 LPLGLTPEDFLRDYWQ-KKPLLIRNAFPEF--HSPLSPDELAGLAQEEDVTSRLVSHESDGTWQVSHGPFEEE-DFLGLP 86 (383)
T ss_pred ccCCCCHHHHHHHHhh-hcchHHhhccccc--ccCCCHHHHHHHhccccccchhhhhccCCceeEeeCccchh-ccccCC
Confidence 3468999999999996 8999999998652 2456677788877655554221 1111 1111 011000
Q ss_pred CCCCCeee-cCccccccc-CccccCCCCCCcChhhhhhhcCCCCCCcceeEeccCCCCCcceecCCCCcceEEEEEeEEE
Q 042108 247 REERPLYL-FDPKFADKV-PTLGGEYEVPVYFREDLFSVLGNERPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKK 324 (406)
Q Consensus 247 ~~~~~~Yl-~d~~~~~~~-p~L~~d~~~P~~f~~d~~~~l~~~rp~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~ 324 (406)
..+-| .+. .+++ |+++.-+ .-|..++.-|-+...+...+.|+|...|+|.++ ++.+|.+|+||
T Consensus 87 ---~~wsllvq~--vd~w~p~v~~l~--------~~FrflP~wr~ddiMIS~a~~GGgvg~H~D~YD--VfliQg~G~RR 151 (383)
T COG2850 87 ---RNWSLLVQA--VDHWHPEVAALM--------EPFRFLPDWRIDDIMISFAAPGGGVGPHFDQYD--VFLIQGQGRRR 151 (383)
T ss_pred ---cCceEEEeh--hhhcCHHHHHHH--------HHhccCccccccceEEEEecCCCccCccccchh--eeEEeecccce
Confidence 00111 000 1111 1111100 012334444566677888899999999999999 99999999999
Q ss_pred EEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeec
Q 042108 325 WILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNY 404 (406)
Q Consensus 325 w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nF 404 (406)
|.+-.+.... ..++..+. .+. ..++ ...+.+++|||+||||+||||.-+.+++|...++-|
T Consensus 152 W~v~~~~~~~-~~~~~~d~-------~~~---~~f~--------~~~d~vlepGDiLYiPp~~~H~gvae~dc~tySvG~ 212 (383)
T COG2850 152 WRVGKKCNMS-TLCPHPDL-------LIL---APFE--------PDIDEVLEPGDILYIPPGFPHYGVAEDDCMTYSVGF 212 (383)
T ss_pred eecCCccccc-CcCCCcch-------hhc---CCCC--------chhhhhcCCCceeecCCCCCcCCcccccccceeeec
Confidence 9997775543 22331110 000 0111 226789999999999999999999999988877665
Q ss_pred c
Q 042108 405 V 405 (406)
Q Consensus 405 v 405 (406)
.
T Consensus 213 r 213 (383)
T COG2850 213 R 213 (383)
T ss_pred c
Confidence 4
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=99.37 E-value=3e-13 Score=128.93 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=82.1
Q ss_pred ccccccCCCHHHHHHHh-----cCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhccCC----------cccCCchHH
Q 042108 60 GLGNLQTLTDELVIDVL-----GFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGE----------FMFNGSWKS 124 (406)
Q Consensus 60 ~lg~l~~Lpdelll~il-----~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~~~~----------~~~~gsWr~ 124 (406)
.+-++..||||+|+.|| +.||.++|.++|+|||.||.++++|++||..|++.|+.. .++.+|||+
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~ 182 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWRE 182 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHH
Confidence 44558899999999999 488999999999999999999999999999999998742 245799999
Q ss_pred HHhhhccCCccCCCccccccceecCccchhhhhhhh
Q 042108 125 TFVSACYPSFDVGKVNVDGCLRVRDFYSDYLFQSWL 160 (406)
Q Consensus 125 t~~~~~~~~~~~~~~~~~~~~~~~~~~sd~l~~~~~ 160 (406)
+++.+.+..++++.+++...++...---|-+|+|+.
T Consensus 183 Mfl~RpRvrFdG~YIS~~tYiR~G~~~~~~~~~PVH 218 (366)
T KOG2997|consen 183 MFLERPRVRFDGVYISKTTYIRQGENSLDSFYRPVH 218 (366)
T ss_pred HHhhCcceeecceEEEEEeEeecCchhhhhhcCcce
Confidence 999988777888777666677662211266777753
No 10
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.23 E-value=5.5e-12 Score=89.02 Aligned_cols=46 Identities=33% Similarity=0.667 Sum_probs=40.6
Q ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHh
Q 042108 65 QTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALD 110 (406)
Q Consensus 65 ~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~ 110 (406)
..||+|++.+||+||+++||.++++|||+|+.++.++.|||.+|++
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 5799999999999999999999999999999999999999999864
No 11
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=7.3e-12 Score=124.60 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=66.2
Q ss_pred CcceeEeccCCC-CCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCC
Q 042108 290 DYRWVIIGPAGS-GSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKK 368 (406)
Q Consensus 290 ~~~~l~iG~~gs-~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~ 368 (406)
...++++.|+|| |...|||--+ +|.+|+.|||+|++|.|......++- +.|+. |.+ .+++.
T Consensus 317 vGaNvYLTPagSqGfaPHyDdIe--aFvlQvEGrK~Wrly~P~~~~eel~l------~sS~N---------f~e-edlge 378 (629)
T KOG3706|consen 317 VGANVYLTPAGSQGFAPHYDDIE--AFVLQVEGRKHWRLYHPTVPLEELAL------VSSDN---------FTE-EDLGE 378 (629)
T ss_pred cccceeecCCCCCCCCCchhhhh--hhhheeccceeeEeecCCCcHhhhhh------ccCCC---------CCh-hHhCC
Confidence 456899999998 8899999888 99999999999999999875423322 11110 000 01224
Q ss_pred CcEEEEEcCCCEEEeCCCCeeeeeecC
Q 042108 369 RPIECICKAGEVIFVPNGWWHLVINLE 395 (406)
Q Consensus 369 ~~~~~vl~pGD~LfIP~gWwH~V~nl~ 395 (406)
+.++++|+|||+||+|.|..||..+-+
T Consensus 379 PV~e~vle~GDllYfPRG~IHQA~t~~ 405 (629)
T KOG3706|consen 379 PVHEFVLEPGDLLYFPRGTIHQADTPA 405 (629)
T ss_pred chHHhhcCCCcEEEecCcceeeccccc
Confidence 568999999999999999999987654
No 12
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=99.14 E-value=2.6e-11 Score=127.86 Aligned_cols=220 Identities=24% Similarity=0.448 Sum_probs=134.4
Q ss_pred CHHHHHHHhcCCCCCEEEecCCCcCcccCCCCHHHHHHHhCCceEEEcce---------ecc-hHHHHHhh-hccCC--C
Q 042108 183 SVEEFVSSFEEPNKPVLLEGCLDNWAALKKWDRDYLVNVCGDVRFAVGPV---------EMK-LEEYFRYS-DSVRE--E 249 (406)
Q Consensus 183 s~e~F~~~y~~~~~PvIi~~~~~~Wpa~~~Wt~~~L~~~~gd~~v~v~~~---------~~~-l~~f~~~~-~~~~~--~ 249 (406)
...-|.+.| +.++||||+|+.+.... ..|.++.|-..+|+....+..- .|. |-+|++-+ +...+ .
T Consensus 529 n~~~FQEhW-kqGqPViVs~V~~~l~g-~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~~fwegFe~~~kr~~~~~g 606 (889)
T KOG1356|consen 529 NLKHFQEHW-KQGQPVIVSGVHKKLNG-LLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVDNFWEGFEGYSKRLKSENG 606 (889)
T ss_pred HHHHHHHHH-hcCCcEEehHhhhhccc-cccchHHHHHHhccchhhhhcCCCCCccccchhhhHHHhhcccccCcccccC
Confidence 445677665 77999999999877664 4899999999999876654321 222 55555433 22222 2
Q ss_pred CC--eeecCcc----cccccC----ccccCCCCCCcChh-hhh---hhcCCC--CCCc---ceeE------eccCCCCCc
Q 042108 250 RP--LYLFDPK----FADKVP----TLGGEYEVPVYFRE-DLF---SVLGNE--RPDY---RWVI------IGPAGSGSS 304 (406)
Q Consensus 250 ~~--~Yl~d~~----~~~~~p----~L~~d~~~P~~f~~-d~~---~~l~~~--rp~~---~~l~------iG~~gs~t~ 304 (406)
.| +-|.||. |.+.+| +|.....+|.|... ..+ +.|++. +|+. .|.= .|-..+.|.
T Consensus 607 ~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTn 686 (889)
T KOG1356|consen 607 WPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTDRDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTN 686 (889)
T ss_pred CeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhcCCCccchHhhCcccccCCCCCchhhhhccccccccCCCCcee
Confidence 33 4556663 333334 34555556655421 112 223321 3331 1111 222456788
Q ss_pred ceecCCCCcceEEEEE--------------------e-------------E----EEEEEeCCCCCCC---Ccc-cC-CC
Q 042108 305 FHMDPNSTSAWNAIIK--------------------G-------------S----KKWILFPPDVVPP---GVH-PS-SD 342 (406)
Q Consensus 305 ~H~D~~~t~~~~~qi~--------------------G-------------~----K~w~L~pP~~~~~---~l~-p~-~d 342 (406)
+|.|..+ +.|+++. | . -.|-+|...+.+. .+- .. +-
T Consensus 687 LH~dvSD--aVNILvyv~e~~~~~~~~~~~~k~~~~~~~de~~~~~~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~ 764 (889)
T KOG1356|consen 687 LHLDVSD--AVNILVYVGEPPGQIEQIAKVLKKIQEGDLDEITRSRISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQ 764 (889)
T ss_pred eceehhh--hhhheeeeccCCchHHhHHHHHHhhhhcchhhhhhhhccccccCCcchhhhhhhcchHHHHHHHHHhhHHh
Confidence 9999999 6666553 1 1 2466665555431 000 00 00
Q ss_pred C---CcccCCCchhhhhhhhhhhh---hcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeeccC
Q 042108 343 G---AEVACPVSIMEWFMNFYGAT---KNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406 (406)
Q Consensus 343 ~---~~v~sp~~~~~w~~~~~p~~---~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv~ 406 (406)
+ ..+..|+--..|+++.|-.. ++.+..++.+++..||++|||+|..|||+||-.||.|++.|||
T Consensus 765 ~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVS 834 (889)
T KOG1356|consen 765 GHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVS 834 (889)
T ss_pred cCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCC
Confidence 1 12456776677888766543 2446788999999999999999999999999999999999997
No 13
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=99.11 E-value=1e-10 Score=125.76 Aligned_cols=206 Identities=24% Similarity=0.437 Sum_probs=130.8
Q ss_pred HHHHHhcCCCCCEEEecCCCcCccc--CCCCHHHHHHHhCC-ceEEE------cceecchHHHHHhhhccCCCCCeeecC
Q 042108 186 EFVSSFEEPNKPVLLEGCLDNWAAL--KKWDRDYLVNVCGD-VRFAV------GPVEMKLEEYFRYSDSVREERPLYLFD 256 (406)
Q Consensus 186 ~F~~~y~~~~~PvIi~~~~~~Wpa~--~~Wt~~~L~~~~gd-~~v~v------~~~~~~l~~f~~~~~~~~~~~~~Yl~d 256 (406)
+|.++- -.+.|.++++-.....++ ..+|....+...|. +.+.| .+.+|++.+|++|....+.++-+-+-.
T Consensus 9 ef~~~~-~~~~p~~~~~~~~lg~~~p~p~f~v~dv~~~vg~~r~~~v~dv~~q~~~km~~~~~~~yy~~~~~~R~yNVis 87 (776)
T KOG1633|consen 9 EFLQDN-GLRVPILFRNKDGLGMTLPSPDFTVNDVKELVGSDRMIDVVDVNTQKDCKMTLKEFVKYYSSPQRKRLYNVIS 87 (776)
T ss_pred hhhhhc-ccccchhhccCCCccccCCCCCcchhhhHHhhCCCccceeeeeeccccccccHHHHhhhhcCcchhhhhheec
Confidence 455543 235777776632222111 15666655555553 33332 247899999999998876555333333
Q ss_pred cccccccCccccCCCCCCcChh-hhhhhcCC-----CCC-CcceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeC
Q 042108 257 PKFADKVPTLGGEYEVPVYFRE-DLFSVLGN-----ERP-DYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFP 329 (406)
Q Consensus 257 ~~~~~~~p~L~~d~~~P~~f~~-d~~~~l~~-----~rp-~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~p 329 (406)
.+|... .|..-+..|+.... ||...... ..| .....+|+..++.|.||.|+.+|++|+-.+.|.|.+.|++
T Consensus 88 LEfS~T--rl~~~V~~P~ivr~ldwV~n~wP~~~~~~~P~vqkyclmsv~~~Ytdfhidfggtsvwyhil~G~K~f~lI~ 165 (776)
T KOG1633|consen 88 LEFSDT--RLSNLVESPEIVRKLDWVDNQWPDDLKMEYPKVQKYCLMSVKDSYTDFHIDFGGTSVWYHILAGEKTFYLIP 165 (776)
T ss_pred cccCcc--hHHhcCCCchhhhhhhchhccCCchhcccccccccceeeeccccccccccCCCCcchhhhhhccccceeeeC
Confidence 333211 12222333332211 11111100 122 3567889999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeecc
Q 042108 330 PDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405 (406)
Q Consensus 330 P~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv 405 (406)
|....-.+|..-..+. +- ...||...-+ ..+.|+|++|++||||.||.|.|.+..+|+++..||.
T Consensus 166 pt~~nl~~ye~w~~s~---~q-----~~~ffGd~Vd---kC~~~~l~~g~T~~iPsGwIhAV~Tp~d~l~fgGnfl 230 (776)
T KOG1633|consen 166 PTCENLELYECWESST---PQ-----DEIFFGDCVD---KCYKCILKQGQTLFIPSGWIHAVLTPTDCLVFGGNFL 230 (776)
T ss_pred Ccccchhhhhhhhhcc---cc-----cccccCCccc---eeEEEEeccCceEecccceeEeeecCcchheeccchh
Confidence 9997644554322111 00 1235555432 3499999999999999999999999999999999995
No 14
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.63 E-value=4.6e-08 Score=66.21 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=38.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHH
Q 042108 67 LTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRN 106 (406)
Q Consensus 67 Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~ 106 (406)
||+|++.+||++|++.|+.++++|||.|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999985
No 15
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.53 E-value=4.5e-08 Score=68.97 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=39.8
Q ss_pred ccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHH
Q 042108 64 LQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLA 108 (406)
Q Consensus 64 l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~ 108 (406)
+..||+|++.+||++|+..+++++++|||.|+.++.+..+|+..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 567999999999999999999999999999999999999999875
No 16
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.3e-05 Score=75.48 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=43.9
Q ss_pred cccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHH
Q 042108 63 NLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLAL 109 (406)
Q Consensus 63 ~l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~ 109 (406)
.+..||||+++.||+.|-.++|++++.|||+||.+++++.+|..+=+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl 143 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDL 143 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeecc
Confidence 47899999999999999999999999999999999999999976643
No 17
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=97.40 E-value=0.00088 Score=61.56 Aligned_cols=64 Identities=27% Similarity=0.506 Sum_probs=53.7
Q ss_pred ccCCCCCcceecCCCCcc--eEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEE
Q 042108 297 GPAGSGSSFHMDPNSTSA--WNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECI 374 (406)
Q Consensus 297 G~~gs~t~~H~D~~~t~~--~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~v 374 (406)
=.+|++..+|++++. .- |..+|.|+=+.+++.|+- ......
T Consensus 87 ~t~G~~~~~H~Hp~a-de~E~y~vi~G~g~m~v~~~~G------------------------------------~~~v~~ 129 (209)
T COG2140 87 KTPGAMRELHYHPNA-DEPEIYYVLKGEGRMLVQKPEG------------------------------------EARVIA 129 (209)
T ss_pred ecCCcccccccCCCC-CcccEEEEEeccEEEEEEcCCC------------------------------------cEEEEE
Confidence 346888889999984 46 999999999999987661 126888
Q ss_pred EcCCCEEEeCCCCeeeeeecCcc
Q 042108 375 CKAGEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 375 l~pGD~LfIP~gWwH~V~nl~~s 397 (406)
+++||++|||.+|-|.++|..+.
T Consensus 130 ~~~Gd~iyVPp~~gH~t~N~Gd~ 152 (209)
T COG2140 130 VRAGDVIYVPPGYGHYTINTGDE 152 (209)
T ss_pred ecCCcEEEeCCCcceEeecCCCC
Confidence 99999999999999999999763
No 18
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=97.38 E-value=0.0003 Score=66.55 Aligned_cols=113 Identities=21% Similarity=0.361 Sum_probs=78.8
Q ss_pred cccCCCHHHHHHHhcCC-CHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhccCC---------cccCCchHHHHhhhccC
Q 042108 63 NLQTLTDELVIDVLGFL-DATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGE---------FMFNGSWKSTFVSACYP 132 (406)
Q Consensus 63 ~l~~Lpdelll~il~~L-d~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~~~~---------~~~~gsWr~t~~~~~~~ 132 (406)
.|..||.|+++.|+-.| |.+||..+|++--.++.+.+++.+||.+|.=.++.. .+-+-.||.+|..
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~---- 276 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ---- 276 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH----
Confidence 67889999999888655 699999999999999999999999999997655421 1223469999986
Q ss_pred CccCCCccccccceecCccchhhhhhhhhhcccCCcCcccCCCc------ccc-CCCCHHHHHHHh
Q 042108 133 SFDVGKVNVDGCLRVRDFYSDYLFQSWLCANLEMKPEWLERDNI------ARK-KCISVEEFVSSF 191 (406)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~sd~l~~~~~c~~~~~~~~~~~~~~I------~r~-~~ls~e~F~~~y 191 (406)
+ ...-.+...|.|+|+ +|.|..+ -.|++.+.- .-. -.+||.+|..-|
T Consensus 277 ---L-----~r~yg~keqyad~lh---lCrhC~~-LfWks~gHPC~~~~~~a~sv~vsP~qFidlf 330 (332)
T KOG3926|consen 277 ---L-----RRTYGVKEQYADTLH---LCRHCCI-LFWKSDGHPCTADGPLACSVPVSPQQFIDLF 330 (332)
T ss_pred ---H-----HHhcChHHHHHHHHH---HHhhceE-eeecCCCCCcccCCCCccCccCCHHHHHHHh
Confidence 1 112233667899985 5555443 134332211 112 257899998754
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.21 E-value=0.00028 Score=68.83 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=45.9
Q ss_pred cCCC----HHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhcc
Q 042108 65 QTLT----DELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLK 113 (406)
Q Consensus 65 ~~Lp----delll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~~ 113 (406)
..|| +++...||+|||+.+|+++-.|||.|+....+..+||+++.+..-
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr 128 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVR 128 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcc
Confidence 4589 999999999999999999999999999999999999999988654
No 20
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.12 E-value=0.00057 Score=49.87 Aligned_cols=44 Identities=30% Similarity=0.509 Sum_probs=32.1
Q ss_pred hhhhhhhcCCC--CCCcceeEeccCCCCCcceecCCCCcceEEEEEeE
Q 042108 277 REDLFSVLGNE--RPDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGS 322 (406)
Q Consensus 277 ~~d~~~~l~~~--rp~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~ 322 (406)
..++++.++.. .+...|+++|+.+|.|++|+|++++ +|..+.|.
T Consensus 11 ~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~ 56 (57)
T smart00558 11 KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGA 56 (57)
T ss_pred cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecC
Confidence 34566666532 3455899999999999999999997 55555553
No 21
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=96.81 E-value=0.0042 Score=54.17 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=50.7
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEE--EE
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIEC--IC 375 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~--vl 375 (406)
.+|+....|+. + ++-+..+++|+=+..++-|+... .. ...... .+
T Consensus 42 ~pg~~~~Ph~h-~-a~~i~~V~~G~~~~~~v~~~~~~--------------------------~~-----~~~~~~~v~l 88 (144)
T PF00190_consen 42 EPGGLRAPHYH-N-ADEIVYVIEGRGRVGVVGPGGPQ--------------------------EE-----FRDFSQKVRL 88 (144)
T ss_dssp ETTEEEEEEEE-S-SEEEEEEEESEEEEEEEETTCSS--------------------------SE-----EEEEEEEEEE
T ss_pred hcCCccceeEe-e-eeEEeeeeccceEEEEEecCCcc--------------------------cc-----ceeeeceeee
Confidence 46788888998 3 45899999999998887666421 00 011333 49
Q ss_pred cCCCEEEeCCCCeeeeeec--CccEEEee
Q 042108 376 KAGEVIFVPNGWWHLVINL--EESIAITQ 402 (406)
Q Consensus 376 ~pGD~LfIP~gWwH~V~nl--~~sIavt~ 402 (406)
++||+++||+||.|.+.|. ++.+.+..
T Consensus 89 ~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~ 117 (144)
T PF00190_consen 89 KAGDVFVVPAGHPHWIINDGDDEALVLII 117 (144)
T ss_dssp ETTEEEEE-TT-EEEEEECSSSSEEEEEE
T ss_pred ecccceeeccceeEEEEcCCCCCCEEEEE
Confidence 9999999999999999999 45555543
No 22
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=96.80 E-value=0.0024 Score=53.23 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=53.9
Q ss_pred ccccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhccCC-----cccCCchHHHHhh
Q 042108 62 GNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLKGE-----FMFNGSWKSTFVS 128 (406)
Q Consensus 62 g~l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~~~~-----~~~~gsWr~t~~~ 128 (406)
..+..+|-++|.-||..+++..|.++-..|-.+... +|+||+.+|.+.++.. ..-..|||+.|.+
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~ 71 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWRELYEK 71 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHHHHHHH
Confidence 456679999999999999999999999999666544 7899999999999641 2223599999997
No 23
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=96.46 E-value=0.013 Score=51.91 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=57.7
Q ss_pred cceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCc
Q 042108 291 YRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRP 370 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~ 370 (406)
..-+.+|+++..+.+|++..+ -|+.|++|.=.+.+...+ ..
T Consensus 29 ~~v~~vgGpn~R~d~H~~~td--E~FyqleG~~~l~v~d~g-------------------------------------~~ 69 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDDPGE--EFFYQLKGEMYLKVTEEG-------------------------------------KR 69 (159)
T ss_pred EEEEEeCCCCCCcccccCCCc--eEEEEEcceEEEEEEcCC-------------------------------------cE
Confidence 445678888999999997754 899999999666543211 11
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEee
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAITQ 402 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~ 402 (406)
..+.|++||+++||+|--|.....++||.+-.
T Consensus 70 ~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvI 101 (159)
T TIGR03037 70 EDVPIREGDIFLLPPHVPHSPQRPAGSIGLVI 101 (159)
T ss_pred EEEEECCCCEEEeCCCCCcccccCCCcEEEEE
Confidence 47899999999999999999999988888753
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=96.26 E-value=0.018 Score=51.87 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=59.0
Q ss_pred CcceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCC
Q 042108 290 DYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKR 369 (406)
Q Consensus 290 ~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~ 369 (406)
++.-+++|.+|..+.+|+++.+ -|+.|++|.=...+...+ +
T Consensus 34 d~~VmvvgGpn~r~d~H~~~td--E~FyqleG~~~l~v~d~g-------------------------------------~ 74 (177)
T PRK13264 34 DFIVMVVGGPNARTDFHYDPGE--EFFYQLEGDMYLKVQEDG-------------------------------------K 74 (177)
T ss_pred CEEEEEEccCCcccccccCCCc--eEEEEECCeEEEEEEcCC-------------------------------------c
Confidence 3445678888999999998866 899999999666664311 1
Q ss_pred cEEEEEcCCCEEEeCCCCeeeeeecCccEEEee
Q 042108 370 PIECICKAGEVIFVPNGWWHLVINLEESIAITQ 402 (406)
Q Consensus 370 ~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~ 402 (406)
...+++++||+++||+|--|.....++||.+-.
T Consensus 75 ~~~v~L~eGd~fllP~gvpHsP~r~~~tv~Lvi 107 (177)
T PRK13264 75 RRDVPIREGEMFLLPPHVPHSPQREAGSIGLVI 107 (177)
T ss_pred eeeEEECCCCEEEeCCCCCcCCccCCCeEEEEE
Confidence 147789999999999999999999888888754
No 25
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=96.11 E-value=0.017 Score=52.44 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=46.1
Q ss_pred eccCCCCCcceecCC-----CCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCc
Q 042108 296 IGPAGSGSSFHMDPN-----STSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRP 370 (406)
Q Consensus 296 iG~~gs~t~~H~D~~-----~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~ 370 (406)
||..-.-|.=|+++. ++.=.+..++|+=...|-.++... + ...
T Consensus 62 vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~-----------~---------------------~~~ 109 (182)
T PF06560_consen 62 VGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDD-----------V---------------------GDV 109 (182)
T ss_dssp ETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-------------------------------------E
T ss_pred cCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCc-----------c---------------------eeE
Confidence 333333444577664 344578889999888886644311 0 123
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEeeeccC
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv~ 406 (406)
+-+..+|||+++||.+|-|.++|.++..-+..|+++
T Consensus 110 ~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~ 145 (182)
T PF06560_consen 110 IAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVP 145 (182)
T ss_dssp EEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEE
T ss_pred EEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEe
Confidence 677899999999999999999999987777777653
No 26
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=95.86 E-value=0.035 Score=56.10 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=49.9
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcC
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKA 377 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~p 377 (406)
.+|..+.+|++++. .=|..+|+|+=+..++.++.. ..+..+++
T Consensus 253 ~PG~~~~~H~H~~~-~E~~yvl~G~~~~~v~d~~g~------------------------------------~~~~~l~~ 295 (367)
T TIGR03404 253 EPGAMRELHWHPNA-DEWQYFIQGQARMTVFAAGGN------------------------------------ARTFDYQA 295 (367)
T ss_pred CCCCccCCeeCcCC-CeEEEEEEEEEEEEEEecCCc------------------------------------EEEEEECC
Confidence 36778899999874 369999999998888655421 14667999
Q ss_pred CCEEEeCCCCeeeeeecCc
Q 042108 378 GEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 378 GD~LfIP~gWwH~V~nl~~ 396 (406)
||++|||.|..|.+.|.++
T Consensus 296 GD~~~iP~g~~H~i~N~G~ 314 (367)
T TIGR03404 296 GDVGYVPRNMGHYVENTGD 314 (367)
T ss_pred CCEEEECCCCeEEEEECCC
Confidence 9999999999999999963
No 27
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=95.78 E-value=0.044 Score=40.99 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=46.5
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcC
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKA 377 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~p 377 (406)
++|...+.|.++.. .-++.+++|+-.+.+ . .-...+++
T Consensus 6 ~pG~~~~~h~H~~~-~e~~~vl~G~~~~~~-~----------------------------------------~~~~~l~~ 43 (71)
T PF07883_consen 6 PPGGSIPPHRHPGE-DEFFYVLSGEGTLTV-D----------------------------------------GERVELKP 43 (71)
T ss_dssp ETTEEEEEEEESSE-EEEEEEEESEEEEEE-T----------------------------------------TEEEEEET
T ss_pred CCCCCCCCEECCCC-CEEEEEEECCEEEEE-c----------------------------------------cEEeEccC
Confidence 56778889998664 279999999977664 1 02678999
Q ss_pred CCEEEeCCCCeeeeeecCcc
Q 042108 378 GEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 378 GD~LfIP~gWwH~V~nl~~s 397 (406)
||+++||++=+|.+.|..+.
T Consensus 44 Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 44 GDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp TEEEEEETTSEEEEEEESSS
T ss_pred CEEEEECCCCeEEEEECCCC
Confidence 99999999999999999754
No 28
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=95.63 E-value=0.079 Score=48.62 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=43.1
Q ss_pred CcceecCCC-CcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEE
Q 042108 303 SSFHMDPNS-TSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVI 381 (406)
Q Consensus 303 t~~H~D~~~-t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~L 381 (406)
|+-|+++.. ..=++.+++|+-.+.|=..+ .......++|||++
T Consensus 87 t~gH~H~~~~~~EiyyvlsG~g~~~l~~~~------------------------------------G~~~~~~v~pGd~v 130 (191)
T PRK04190 87 TKGHFHAKADRAEIYYGLKGKGLMLLQDPE------------------------------------GEARWIEMEPGTVV 130 (191)
T ss_pred CCCeEcCCCCCCEEEEEEeCEEEEEEecCC------------------------------------CcEEEEEECCCCEE
Confidence 666776532 23588899999888772211 01257789999999
Q ss_pred EeCCCCeeeeeecCcc
Q 042108 382 FVPNGWWHLVINLEES 397 (406)
Q Consensus 382 fIP~gWwH~V~nl~~s 397 (406)
|||+||-|.++|..+.
T Consensus 131 ~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 131 YVPPYWAHRSVNTGDE 146 (191)
T ss_pred EECCCCcEEeEECCCC
Confidence 9999999999998653
No 29
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=95.39 E-value=0.052 Score=47.33 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=49.5
Q ss_pred CcceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCC
Q 042108 290 DYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKR 369 (406)
Q Consensus 290 ~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~ 369 (406)
+..-+++|+++..+.+|+++.. -|+.|++|.=...+...+ .
T Consensus 33 ~f~VmvVGGPN~R~DyHine~e--E~FyQ~kG~m~Lkv~e~g-------------------------------------~ 73 (151)
T PF06052_consen 33 DFIVMVVGGPNQRTDYHINETE--EFFYQLKGDMCLKVVEDG-------------------------------------K 73 (151)
T ss_dssp SEEEEEEESSB--SSEEE-SS---EEEEEEES-EEEEEEETT-------------------------------------E
T ss_pred CeEEEEEcCCCCCCccccCCcc--eEEEEEeCcEEEEEEeCC-------------------------------------c
Confidence 3456789999999999999987 899999998665553321 1
Q ss_pred cEEEEEcCCCEEEeCCCCeeeeeecCccEEEe
Q 042108 370 PIECICKAGEVIFVPNGWWHLVINLEESIAIT 401 (406)
Q Consensus 370 ~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt 401 (406)
.-++.+++||+.++|++--|.-.-.++||.+-
T Consensus 74 ~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLV 105 (151)
T PF06052_consen 74 FKDIPIREGEMFLLPANVPHSPQRPADTIGLV 105 (151)
T ss_dssp EEEEEE-TTEEEEE-TT--EEEEE-TT-EEEE
T ss_pred eEEEEeCCCcEEecCCCCCCCCcCCCCcEEEE
Confidence 24789999999999999999998889998864
No 30
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.94 E-value=0.013 Score=62.09 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=46.1
Q ss_pred cccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhcc
Q 042108 63 NLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLK 113 (406)
Q Consensus 63 ~l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~~ 113 (406)
-+..||-|+.+.||+|||+++|+++++|||.|+..+.++..|.+.|.....
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 356799999999999999999999999999999999999999988877553
No 31
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=94.72 E-value=0.18 Score=43.02 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=51.5
Q ss_pred eeEeccCCCCCcceecC-CCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcE
Q 042108 293 WVIIGPAGSGSSFHMDP-NSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPI 371 (406)
Q Consensus 293 ~l~iG~~gs~t~~H~D~-~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~ 371 (406)
.++-..+|..++.|..+ .. ....+++|+=++.+= .-
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~--~~~~Vl~G~~~~~~~-----------------------------------------g~ 82 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGE--QTIYVLEGEGTVQLE-----------------------------------------GE 82 (131)
T ss_pred EEEEECCCcccccccCCCcc--eEEEEEecEEEEEec-----------------------------------------CC
Confidence 35566789999999998 43 678888988665551 02
Q ss_pred EEEEcCCCEEEeCCCCeeeeeecCcc--EEEe
Q 042108 372 ECICKAGEVIFVPNGWWHLVINLEES--IAIT 401 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl~~s--Iavt 401 (406)
..++++||+++||+|=.|.+.|.+++ +-|.
T Consensus 83 ~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~ 114 (131)
T COG1917 83 KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLL 114 (131)
T ss_pred ceEecCCCEEEECCCCeeeeccCCCCceeEEE
Confidence 45889999999999999999999887 4443
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.49 E-value=0.02 Score=57.81 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=44.0
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhcc
Q 042108 66 TLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNLK 113 (406)
Q Consensus 66 ~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~~ 113 (406)
.||.|+++.|||+||..+|++.+++|+.|...+.|-..|..+=+-.++
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~ 121 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQ 121 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcch
Confidence 599999999999999999999999999999999999999888665554
No 33
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=94.39 E-value=0.012 Score=57.33 Aligned_cols=99 Identities=20% Similarity=0.101 Sum_probs=63.6
Q ss_pred eccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCC-CCcccCCCC-CcccCCCchhhhhhhhhhhhhcCCCCcEEE
Q 042108 296 IGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVP-PGVHPSSDG-AEVACPVSIMEWFMNFYGATKNWKKRPIEC 373 (406)
Q Consensus 296 iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~-~~l~p~~d~-~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~ 373 (406)
++-....+..|.|-.. ++++|+.|-||-++++|.+.. -..|.-.++ .++- .|+..++.-+++.+....+....+
T Consensus 180 vpvEvg~~y~~~~w~q--~l~t~~~g~~R~~~~~p~~~~YlAqh~lfdqi~elk--~Di~iPDyc~~~~f~~~~v~~~~w 255 (355)
T KOG2132|consen 180 VPVEVGSTYADEDWSQ--NLMTQIKGIKRCILFEPRECLYLAQHHLFDQIPELK--FDISIPDYCSFPNFENEVVDINAW 255 (355)
T ss_pred eeeecccccchhHHHh--hhHHHhhhhhhhhcCCccccchhhhhhhhccchhhh--hccCCCceeecCCCCccccceeEE
Confidence 4555566788999887 999999999999999999321 011221222 1111 122233455666665322343455
Q ss_pred EEcCCCEEEeCCCCeeeeeecCccE
Q 042108 374 ICKAGEVIFVPNGWWHLVINLEESI 398 (406)
Q Consensus 374 vl~pGD~LfIP~gWwH~V~nl~~sI 398 (406)
+..+|++++||..|||.+....-+.
T Consensus 256 ~GpaGtV~pih~dp~hNi~~qv~G~ 280 (355)
T KOG2132|consen 256 IGPAGTVLPIHMDPWHNILSQVFGR 280 (355)
T ss_pred eccCCceeccccccccceeeeeecc
Confidence 6666999999999999998876543
No 34
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=94.33 E-value=0.26 Score=49.90 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=48.2
Q ss_pred eEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEE
Q 042108 294 VIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIEC 373 (406)
Q Consensus 294 l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~ 373 (406)
+-+.+ |....+|.+... -|..+++|+=+..+..... +.+..
T Consensus 72 ~~l~p-G~~~~~HwH~~~--E~~yVl~G~~~v~~~d~~g------------------------------------~~~~~ 112 (367)
T TIGR03404 72 MRLEP-GAIRELHWHKEA--EWAYVLYGSCRITAVDENG------------------------------------RNYID 112 (367)
T ss_pred EEEcC-CCCCCcccCCCc--eEEEEEeeEEEEEEEcCCC------------------------------------cEEEe
Confidence 34444 556678888654 6999999998887754211 12445
Q ss_pred EEcCCCEEEeCCCCeeeeeecCcc
Q 042108 374 ICKAGEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 374 vl~pGD~LfIP~gWwH~V~nl~~s 397 (406)
.|++||++|||+|..|...|.++.
T Consensus 113 ~L~~GD~~~fP~g~~H~~~n~~~~ 136 (367)
T TIGR03404 113 DVGAGDLWYFPPGIPHSLQGLDEG 136 (367)
T ss_pred EECCCCEEEECCCCeEEEEECCCC
Confidence 899999999999999999998653
No 35
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.23 Score=42.34 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=24.1
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-++.+++||++|||+|-.|.+.|...
T Consensus 75 ~~~~v~~gd~~~iP~g~~H~~~N~G~ 100 (127)
T COG0662 75 EEVEVKAGDSVYIPAGTPHRVRNTGK 100 (127)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 47899999999999999999999975
No 36
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=93.17 E-value=0.49 Score=41.16 Aligned_cols=63 Identities=19% Similarity=0.351 Sum_probs=46.1
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcC
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKA 377 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~p 377 (406)
++|+.++.|+++.. .-+..+++|+=...+.-++.. ...+..+++
T Consensus 38 ~pg~~~~~h~H~~~-~e~~~Vl~G~~~~~~~~~~~~-----------------------------------~~~~~~l~~ 81 (146)
T smart00835 38 EPGGMLPPHYHPRA-TELLYVVRGEGRVGVVDPNGN-----------------------------------KVYDARLRE 81 (146)
T ss_pred cCCcCcCCeeCCCC-CEEEEEEeCeEEEEEEeCCCC-----------------------------------eEEEEEecC
Confidence 45667888887643 258888999877665432110 125789999
Q ss_pred CCEEEeCCCCeeeeeecCc
Q 042108 378 GEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 378 GD~LfIP~gWwH~V~nl~~ 396 (406)
||+++||+|.+|...|.++
T Consensus 82 GD~~~ip~g~~H~~~n~~~ 100 (146)
T smart00835 82 GDVFVVPQGHPHFQVNSGD 100 (146)
T ss_pred CCEEEECCCCEEEEEcCCC
Confidence 9999999999999999853
No 37
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.56 E-value=0.13 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.9
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecC
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLE 395 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~ 395 (406)
..++..|||.+|||+|-.|+-.|+.
T Consensus 88 ~ha~~~pGDf~YiPpgVPHqp~N~S 112 (142)
T COG4101 88 EHAEVGPGDFFYIPPGVPHQPANLS 112 (142)
T ss_pred eeEEecCCCeEEcCCCCCCcccccC
Confidence 4678999999999999999999995
No 38
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=92.39 E-value=0.81 Score=39.04 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=26.7
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEe
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAIT 401 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt 401 (406)
-+..|+|||++|+|++=.|...|.+++..|.
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~ 105 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAGEDMRLVC 105 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcCCCEEEEE
Confidence 4678999999999999999999997765554
No 39
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=92.19 E-value=0.52 Score=40.54 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=35.2
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcC
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKA 377 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~p 377 (406)
+.|..-.+|.+... .-++++++|+=.+.+.... ...+.+|..
T Consensus 41 ~~~~~RG~H~Hk~~-~~~~~~l~Gs~~v~~~d~~-------------------------------------~~~~~~L~~ 82 (131)
T PF05523_consen 41 PPGVIRGWHAHKKT-TQWFIVLSGSFKVVLDDGR-------------------------------------EEEEFILDE 82 (131)
T ss_dssp -SS--EEEEEESS---EEEEEEES-EEEEEE-SS--------------------------------------EEEEEE--
T ss_pred CCCCcccccccccc-cEEEEEEeCEEEEEEecCC-------------------------------------CcEEEEECC
Confidence 44444567777654 3689999999777753211 013555654
Q ss_pred C-CEEEeCCCCeeeeeecCccEEEeeec
Q 042108 378 G-EVIFVPNGWWHLVINLEESIAITQNY 404 (406)
Q Consensus 378 G-D~LfIP~gWwH~V~nl~~sIavt~nF 404 (406)
. ..|+||+|+||...++++. ||-..|
T Consensus 83 ~~~~L~Ippg~w~~~~~~s~~-svlLv~ 109 (131)
T PF05523_consen 83 PNKGLYIPPGVWHGIKNFSED-SVLLVL 109 (131)
T ss_dssp TTEEEEE-TT-EEEEE---TT--EEEEE
T ss_pred CCeEEEECCchhhHhhccCCC-cEEEEE
Confidence 4 4899999999999999765 444333
No 40
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=92.10 E-value=0.43 Score=47.61 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=47.7
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcC
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKA 377 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~p 377 (406)
++|..++.|.+... ++..+|.|.-.++.+ ..-.+..++
T Consensus 89 ~pGe~~~~HRht~s--Al~~vveG~G~~t~V----------------------------------------~g~~~~~~~ 126 (335)
T TIGR02272 89 LPGEVAPSHRHTQS--ALRFIVEGKGAFTAV----------------------------------------DGERTTMHP 126 (335)
T ss_pred CCCCCCCccccccc--eEEEEEEcCceEEEE----------------------------------------CCEEEeeeC
Confidence 56888888998776 888888887545442 124778999
Q ss_pred CCEEEeCCCCeeeeeecCccEEEe
Q 042108 378 GEVIFVPNGWWHLVINLEESIAIT 401 (406)
Q Consensus 378 GD~LfIP~gWwH~V~nl~~sIavt 401 (406)
||++.+|++.||.-.|.++...|-
T Consensus 127 gD~~~tP~w~wH~H~n~~d~~~~w 150 (335)
T TIGR02272 127 GDFIITPSWTWHDHGNPGDEPMIW 150 (335)
T ss_pred CCEEEeCCCeeEecccCCCCcEEE
Confidence 999999999999998887654443
No 41
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=91.95 E-value=0.89 Score=39.73 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=41.1
Q ss_pred ceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcE
Q 042108 292 RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPI 371 (406)
Q Consensus 292 ~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~ 371 (406)
.||--=.+|+.|+.|++.+. -.+++++|+-.-.|...+. -| | ..+.
T Consensus 46 VwlQTfAPG~~TPiHRHsCE--EVFvVLkG~GTl~l~~~~~----~~----------------------p------G~pq 91 (167)
T PF02041_consen 46 VWLQTFAPGSATPIHRHSCE--EVFVVLKGSGTLYLASSHE----KY----------------------P------GKPQ 91 (167)
T ss_dssp EEEEEE-TT-B--EEEESS---EEEEEEE--EEEEE--SSS----SS------------------------------S-E
T ss_pred EEeeeecCCCCCCCcccccc--EEEEEEecceEEEEecccc----cC----------------------C------CCce
Confidence 35444468999999999998 7999999998887762211 11 1 3557
Q ss_pred EEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 372 ECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
++...|+++++||.+--|||.|.++
T Consensus 92 ef~~~pnSTf~IPvn~~HQv~NT~e 116 (167)
T PF02041_consen 92 EFPIFPNSTFHIPVNDAHQVWNTNE 116 (167)
T ss_dssp EEEE-TTEEEEE-TT--EEEE---S
T ss_pred EEEecCCCeEEeCCCCcceeecCCC
Confidence 9999999999999999999999863
No 42
>PF13013 F-box-like_2: F-box-like domain
Probab=90.84 E-value=0.29 Score=40.74 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=33.6
Q ss_pred ccccccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCC
Q 042108 60 GLGNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANH 100 (406)
Q Consensus 60 ~lg~l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~ 100 (406)
++ .+..||+||+..|+.+++..++..+..+|+.++.....
T Consensus 19 ~l-tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 19 SL-TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred cc-chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 45 56679999999999999999999999999977754333
No 43
>PLN00212 glutelin; Provisional
Probab=89.81 E-value=1.6 Score=45.71 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCC
Q 042108 299 AGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAG 378 (406)
Q Consensus 299 ~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pG 378 (406)
+|+..+.|+.++. +.+..+++|+=+.-++.+.- ...+..+|++|
T Consensus 357 ~gam~~PHwn~nA-~eI~yV~rG~g~vqvV~~~g-----------------------------------~~vf~~~L~~G 400 (493)
T PLN00212 357 QNALLSPFWNVNA-HSVVYITQGRARVQVVSNNG-----------------------------------KTVFNGVLRPG 400 (493)
T ss_pred CCcccCCeecCCC-CEEEEEeecceEEEEEcCCC-----------------------------------CEEEEEEEcCC
Confidence 5778889999995 47889999998888875321 12378899999
Q ss_pred CEEEeCCCCeeeeeecCccEEE
Q 042108 379 EVIFVPNGWWHLVINLEESIAI 400 (406)
Q Consensus 379 D~LfIP~gWwH~V~nl~~sIav 400 (406)
|++.||.|+.|...+-.+++-+
T Consensus 401 dvfVVPqg~~v~~~A~~egfe~ 422 (493)
T PLN00212 401 QLLIIPQHYAVLKKAEREGCQY 422 (493)
T ss_pred CEEEECCCCeEEEeecCCceEE
Confidence 9999999999988777655443
No 44
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=89.18 E-value=3 Score=37.77 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=53.4
Q ss_pred cceeEeccCCCCCcceecCC-CCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCC
Q 042108 291 YRWVIIGPAGSGSSFHMDPN-STSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKR 369 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~-~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~ 369 (406)
..++-+..+|+.-.+|+... ...=+..+++|+=.-+++...... | .+ .+
T Consensus 45 Q~n~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~S--------------p------------Tf----G~ 94 (176)
T TIGR01221 45 QDNHSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNS--------------P------------TF----GK 94 (176)
T ss_pred eeEEEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCc--------------C------------CC----Ce
Confidence 44666777788888998732 122578888998887776654322 1 11 12
Q ss_pred cEEEEEcC--CCEEEeCCCCeeeeeecCcc
Q 042108 370 PIECICKA--GEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 370 ~~~~vl~p--GD~LfIP~gWwH~V~nl~~s 397 (406)
...++|.+ +-+||||.|.+|...+|++.
T Consensus 95 ~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 95 WVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred EEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence 24566776 66999999999999999875
No 45
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=86.20 E-value=0.11 Score=51.11 Aligned_cols=49 Identities=31% Similarity=0.341 Sum_probs=44.5
Q ss_pred ccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHhcCChhHHHHHHHhhc
Q 042108 64 LQTLTDELVIDVLGFLDATQLGVLATVSKSFYVFANHEPLWRNLALDNL 112 (406)
Q Consensus 64 l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~~~~d~lWr~~~~~~~ 112 (406)
+..+++.+++.++++|+.++|.+.|+|+|++-...+++.+|.+.|.+.+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 4458889999999999999999999999999999999999999996644
No 46
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=85.04 E-value=5.3 Score=36.98 Aligned_cols=97 Identities=28% Similarity=0.333 Sum_probs=52.1
Q ss_pred cceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcc--cCCCCCcccCCCchhhhhhhhhhhhhcCCC
Q 042108 291 YRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVH--PSSDGAEVACPVSIMEWFMNFYGATKNWKK 368 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~--p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~ 368 (406)
..|.-+-.+|..-..|.+++. .|+|.=+..+ |+.... ..+ |..+. .+..|- ..+.......
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~------~lSgvyYl~~-p~~~g~-~~f~~p~~~~-~~~~~~--------~~~~~~~~~~ 159 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGS------VISGTYYVQT-PENCGA-IKFEDPRLDD-MMAAPM--------RIPNAKRAVQ 159 (201)
T ss_pred eEeEEEcCCCCccCceECCCc------eEEEEEEEeC-CCCCCc-eeEecCcchh-hhcccc--------ccCccccccC
Confidence 468888889999999999874 4455444443 433221 111 11100 000000 0011100001
Q ss_pred CcEEEEEcCCCEEEeCCCCeeeeeecC---ccEEEeeec
Q 042108 369 RPIECICKAGEVIFVPNGWWHLVINLE---ESIAITQNY 404 (406)
Q Consensus 369 ~~~~~vl~pGD~LfIP~gWwH~V~nl~---~sIavt~nF 404 (406)
..+.+.-++|++|+.|+.-||.|..-. +=|+|+.|+
T Consensus 160 ~~~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl 198 (201)
T TIGR02466 160 RFVYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFNY 198 (201)
T ss_pred ccEEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEee
Confidence 123345589999999999999997663 445555555
No 47
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=84.75 E-value=0.86 Score=48.74 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=79.4
Q ss_pred CCcceeEeccCCCCCcceecCCCCcceEEEEEe-EEEEEEeCCCCCCC------CcccCCCC-C--------cccCCCch
Q 042108 289 PDYRWVIIGPAGSGSSFHMDPNSTSAWNAIIKG-SKKWILFPPDVVPP------GVHPSSDG-A--------EVACPVSI 352 (406)
Q Consensus 289 p~~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G-~K~w~L~pP~~~~~------~l~p~~d~-~--------~v~sp~~~ 352 (406)
.....|++|-=-+..+||.+-.+-..+|..--| -|.|..+||+.... +++|.... . -+.+|.
T Consensus 172 vNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~-- 249 (690)
T KOG0958|consen 172 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPS-- 249 (690)
T ss_pred cCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHH--
Confidence 446679999989999999999988889988888 59999999998541 33442211 0 011221
Q ss_pred hhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeeccC
Q 042108 353 MEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406 (406)
Q Consensus 353 ~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv~ 406 (406)
.+++-+.+...+|+++||.|.-=.+=+|.-.|++..+|=+.||.+
T Consensus 250 ---------~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat 294 (690)
T KOG0958|consen 250 ---------VLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFAT 294 (690)
T ss_pred ---------HHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccc
Confidence 123334456789999999999977889999999999998888864
No 48
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=84.68 E-value=3.4 Score=33.48 Aligned_cols=96 Identities=22% Similarity=0.349 Sum_probs=39.5
Q ss_pred ceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCC-cccCCCchhhhhhhhhhhhhcCCCCc
Q 042108 292 RWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGA-EVACPVSIMEWFMNFYGATKNWKKRP 370 (406)
Q Consensus 292 ~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~-~v~sp~~~~~w~~~~~p~~~~~~~~~ 370 (406)
.|+-+-.+|.....|.+++. .|..+. ++=+|++... ..+-..+.. ....+. ...+.. ......
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s--~~SgVy-----Yv~~p~~~~~-l~f~~~~~~~~~~~~~-------~~~~~~-~~~~~~ 65 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNS--WLSGVY-----YVQVPEGSGP-LRFHDPRGSFSFGAPF-------DNYDQN-DLNSPY 65 (101)
T ss_dssp EEEEEE-TT--EEEE--TT---SEEEEE-----ECE--TTS-S-EEEE-TTCCCGTTS-----------TTTT-CCC-SE
T ss_pred eeEEEeCCCCccCceECCCc--CEEEEE-----EEECCCCCCc-eeeeCCCccceecccc-------cccccC-cccCce
Confidence 47777888989999999875 344332 2223443321 111111111 111110 000000 011234
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecC---ccEEEeee
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLE---ESIAITQN 403 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~---~sIavt~n 403 (406)
+....++|++|..|+.-+|.|..-. +=|+|+.|
T Consensus 66 ~~~~p~~G~lvlFPs~l~H~v~p~~~~~~RisisfN 101 (101)
T PF13759_consen 66 YIVEPEEGDLVLFPSWLWHGVPPNNSDEERISISFN 101 (101)
T ss_dssp EEE---TTEEEEEETTSEEEE----SSS-EEEEEEE
T ss_pred EEeCCCCCEEEEeCCCCEEeccCcCCCCCEEEEEcC
Confidence 6778899999999999999997663 34555554
No 49
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=83.38 E-value=10 Score=34.23 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred cceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCc
Q 042108 291 YRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRP 370 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~ 370 (406)
..++.++.+|..-.+|++.-.-.=+.++++|+=.-+++.-.... | -|. ..
T Consensus 46 Q~n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~S--------------p---------Tyg-------~~ 95 (173)
T COG1898 46 QDNHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDS--------------P---------TYG-------KW 95 (173)
T ss_pred cceEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCC--------------C---------Ccc-------eE
Confidence 45677888888888999876512467778888776665533321 1 011 22
Q ss_pred EEEEEcCC--CEEEeCCCCeeeeeecCccE
Q 042108 371 IECICKAG--EVIFVPNGWWHLVINLEESI 398 (406)
Q Consensus 371 ~~~vl~pG--D~LfIP~gWwH~V~nl~~sI 398 (406)
..+++.+- .+|+||.|+.|-..+|+++.
T Consensus 96 ~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 96 VGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred EEEEecCCCceEEEeCCcccceeEEccCce
Confidence 45566655 89999999999999999876
No 50
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=83.35 E-value=6.9 Score=36.88 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCC
Q 042108 299 AGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAG 378 (406)
Q Consensus 299 ~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pG 378 (406)
.++..++|++... +..++.|+=++.+ ..-+.+++||
T Consensus 165 ~~~sf~wtl~~dE---i~YVLEGe~~l~I-----------------------------------------dG~t~~l~pG 200 (233)
T PRK15457 165 ENAFFPWTLNYDE---IDMVLEGELHVRH-----------------------------------------EGETMIAKAG 200 (233)
T ss_pred ecCccceeccceE---EEEEEEeEEEEEE-----------------------------------------CCEEEEeCCC
Confidence 3556677888776 7888888866555 1147789999
Q ss_pred CEEEeCCCCeeeeeecCc
Q 042108 379 EVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 379 D~LfIP~gWwH~V~nl~~ 396 (406)
|++|||+|-.|+-.+.+.
T Consensus 201 DvlfIPkGs~~hf~tp~~ 218 (233)
T PRK15457 201 DVMFIPKGSSIEFGTPSS 218 (233)
T ss_pred cEEEECCCCeEEecCCCC
Confidence 999999999966554433
No 51
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=82.61 E-value=4.4 Score=42.42 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-+..+++||++|||+|=.|...|..+
T Consensus 415 ~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 415 ETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 47799999999999999999999864
No 52
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=79.88 E-value=10 Score=31.00 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCC
Q 042108 300 GSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGE 379 (406)
Q Consensus 300 gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD 379 (406)
+.....|..... .+..+++|.-.+.+ ..-+..++|||
T Consensus 13 ~~~~~~h~h~~~--~i~~v~~G~~~~~~-----------------------------------------~~~~~~l~~g~ 49 (136)
T PF02311_consen 13 NFEFPPHWHDFY--EIIYVLSGEGTLHI-----------------------------------------DGQEYPLKPGD 49 (136)
T ss_dssp T-SEEEETT-SE--EEEEEEEE-EEEEE-----------------------------------------TTEEEEE-TT-
T ss_pred CCccCCEECCCE--EEEEEeCCEEEEEE-----------------------------------------CCEEEEEECCE
Confidence 344456777665 78888888866544 11467899999
Q ss_pred EEEeCCCCeeeeeecC
Q 042108 380 VIFVPNGWWHLVINLE 395 (406)
Q Consensus 380 ~LfIP~gWwH~V~nl~ 395 (406)
+++||+|=.|.....+
T Consensus 50 ~~li~p~~~H~~~~~~ 65 (136)
T PF02311_consen 50 LFLIPPGQPHSYYPDS 65 (136)
T ss_dssp EEEE-TTS-EEEEE-T
T ss_pred EEEecCCccEEEecCC
Confidence 9999999999998887
No 53
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=79.19 E-value=13 Score=33.58 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.3
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-...|++||++|+|++=.|...|.++
T Consensus 146 ~~~~l~~Gd~~~~~~~~~H~~~n~~~ 171 (185)
T PRK09943 146 QDYHLVAGQSYAINTGIPHSFSNTSA 171 (185)
T ss_pred EEEEecCCCEEEEcCCCCeeeeCCCC
Confidence 46789999999999999999999865
No 54
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=76.42 E-value=2.8 Score=42.42 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.0
Q ss_pred cccCCCHHHHHHHhcCCC-HHHHHHHHHHhHHHHHhcC
Q 042108 63 NLQTLTDELVIDVLGFLD-ATQLGVLATVSKSFYVFAN 99 (406)
Q Consensus 63 ~l~~Lpdelll~il~~Ld-~~~L~~l~~~~r~~y~~~~ 99 (406)
..+.||+|+|..|...|+ .-|+.++..|||.|+.-..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 356799999999999995 7899999999999886544
No 55
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=75.63 E-value=1.9 Score=33.11 Aligned_cols=17 Identities=41% Similarity=0.976 Sum_probs=14.5
Q ss_pred EEEEEcCCCEEEeCCCC
Q 042108 371 IECICKAGEVIFVPNGW 387 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gW 387 (406)
-...+.|||++++|+||
T Consensus 44 ~~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 44 ETVTFKAGDAFFLPKGW 60 (74)
T ss_dssp EEEEEETTEEEEE-TTE
T ss_pred CEEEEcCCcEEEECCCC
Confidence 46789999999999999
No 56
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=75.49 E-value=3.5 Score=36.39 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.0
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-...+.+||.+|||.|-.|.+.|.+.
T Consensus 102 ~~~~~~~g~sv~Ip~g~~H~i~n~g~ 127 (151)
T PF01050_consen 102 EEFTLKEGDSVYIPRGAKHRIENPGK 127 (151)
T ss_pred EEEEEcCCCEEEECCCCEEEEECCCC
Confidence 36689999999999999999999853
No 57
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=74.81 E-value=7.4 Score=36.00 Aligned_cols=72 Identities=11% Similarity=0.298 Sum_probs=56.1
Q ss_pred cceeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCc
Q 042108 291 YRWVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRP 370 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~ 370 (406)
..-+++|.++..+.+|..+.. -|+.|.+|.-...++.-+ ..
T Consensus 34 lkVm~VGGPN~RkdyHieege--E~FyQ~KGdMvLKVie~g-------------------------------------~~ 74 (279)
T KOG3995|consen 34 LKVMFVGGPNTRKDYHIEEGE--EVFYQLKGDMVLKVLEQG-------------------------------------KH 74 (279)
T ss_pred eEEEEecCCCcccccccCCcc--hhheeecCceEEeeeccC-------------------------------------cc
Confidence 346889999999999999887 899999987544432211 12
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEe
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAIT 401 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt 401 (406)
.+.+++.||+..+|+.--|.-.-..+||.+-
T Consensus 75 rDivI~qGe~flLParVpHSPqRFantvGlV 105 (279)
T KOG3995|consen 75 RDVVIRQGEIFLLPARVPHSPQRFANTVGLV 105 (279)
T ss_pred eeeEEecCcEEEeccCCCCChhhhccceeEE
Confidence 4789999999999999999988777777654
No 58
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=72.28 E-value=14 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.6
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-+..|+|||.+|||+|=-|...|..+
T Consensus 424 ~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 424 DIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCCC
Confidence 47899999999999999999999854
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=71.04 E-value=26 Score=31.63 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=51.5
Q ss_pred cceeEeccCCCCCcceecCCC--CcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCC
Q 042108 291 YRWVIIGPAGSGSSFHMDPNS--TSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKK 368 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~~--t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~ 368 (406)
..++-...+|+.-.+|+.... -.=+..+++|+=.-+++.-... || .+ .
T Consensus 44 q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~--------------Sp------------Tf----g 93 (176)
T PF00908_consen 44 QDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKG--------------SP------------TF----G 93 (176)
T ss_dssp EEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTT--------------ST------------TT----T
T ss_pred ceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCC--------------CC------------CC----C
Confidence 456667777887788987653 1136778889877766642221 11 11 1
Q ss_pred CcEEEEEcCCC--EEEeCCCCeeeeeecCcc
Q 042108 369 RPIECICKAGE--VIFVPNGWWHLVINLEES 397 (406)
Q Consensus 369 ~~~~~vl~pGD--~LfIP~gWwH~V~nl~~s 397 (406)
+...++|.+++ .||||.|.+|...++++.
T Consensus 94 ~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 94 KWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp -EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred EEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 33677887776 799999999999999875
No 60
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=70.81 E-value=35 Score=26.83 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=44.3
Q ss_pred eecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCC
Q 042108 306 HMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPN 385 (406)
Q Consensus 306 H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~ 385 (406)
|.=-.+|-+-+.+++|+=+++.+.++... ..-+.++.+|+.-+|++
T Consensus 19 H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~----------------------------------~~~~~~~~~~~~~~i~P 64 (82)
T PF09313_consen 19 HNTKAGTWGKLRVLEGELKFYGLDEEGEE----------------------------------PEEEVFIPAGQPPVIEP 64 (82)
T ss_dssp BCCSTTEEEEEEEEESEEEEEEESSTT-S----------------------------------ESEEEEEETTEEEEE-T
T ss_pred cCCCCCeEEEEEEEeeEEEEEEECCCCCc----------------------------------eeEEEEeCCCCCceeCC
Confidence 44444566789999999999998865321 11578999999999999
Q ss_pred CCeeeeeecCccEEE
Q 042108 386 GWWHLVINLEESIAI 400 (406)
Q Consensus 386 gWwH~V~nl~~sIav 400 (406)
.-||.|..+++-+-+
T Consensus 65 q~wH~V~p~s~D~~f 79 (82)
T PF09313_consen 65 QQWHRVEPLSDDLRF 79 (82)
T ss_dssp T-EEEEEESSTT-EE
T ss_pred CceEEEEECCCCEEE
Confidence 999999999875443
No 61
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=68.86 E-value=5.4 Score=40.73 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=24.6
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEee
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAITQ 402 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~ 402 (406)
-.+.|+|||++|||+|-.|....-. +|-|-+
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~G~-~iEima 267 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQGV-ALEVMA 267 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcCCe-EEEEEe
Confidence 3678999999999999999987754 554443
No 62
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=68.25 E-value=4.3 Score=34.16 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecC
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLE 395 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~ 395 (406)
--.+++|||.+|+|+||.=-=.-+|
T Consensus 82 e~v~~~aGD~~~~~~G~~g~W~V~E 106 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFKGTWEVLE 106 (116)
T ss_pred eEEEEcCCCEEEECCCCeEEEEEee
Confidence 4668999999999999975433333
No 63
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=67.13 E-value=5.1 Score=32.24 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.9
Q ss_pred ccccCCCHHHHHHHhcCCCHHHHHHH
Q 042108 62 GNLQTLTDELVIDVLGFLDATQLGVL 87 (406)
Q Consensus 62 g~l~~Lpdelll~il~~Ld~~~L~~l 87 (406)
..+..||.|+-..||++|+-.||..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 67889999999999999999999876
No 64
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=67.04 E-value=6.2 Score=38.97 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=24.8
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEeee
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAITQN 403 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~n 403 (406)
-.+.++|||.+|||+|=.|....- ..+=+.||
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~G-~~lEvmqn 189 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLKG-LVLEVMQN 189 (312)
T ss_pred cEEecCCCCEEEecCCCceeeccc-eEEEEEec
Confidence 367899999999999999998765 44444443
No 65
>PRK11171 hypothetical protein; Provisional
Probab=66.47 E-value=30 Score=33.37 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=23.4
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-+.+|++||.+|+|++=-|...|..+
T Consensus 101 ~~~~L~~GDsi~~p~~~~H~~~N~g~ 126 (266)
T PRK11171 101 KTHALSEGGYAYLPPGSDWTLRNAGA 126 (266)
T ss_pred EEEEECCCCEEEECCCCCEEEEECCC
Confidence 47799999999999999999999864
No 66
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=66.45 E-value=6.4 Score=37.84 Aligned_cols=26 Identities=12% Similarity=-0.079 Sum_probs=23.6
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-...+++||++|||++--|...|..+
T Consensus 218 ~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 218 NWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEEEecCCCEEEECCCCCEEEEecCC
Confidence 47789999999999999999999864
No 67
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=65.25 E-value=16 Score=34.22 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=44.1
Q ss_pred eeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhh--hhhhhhhhcCCCCc
Q 042108 293 WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWF--MNFYGATKNWKKRP 370 (406)
Q Consensus 293 ~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~--~~~~p~~~~~~~~~ 370 (406)
-+.|...+..||+|++..-+--+..=--|.=...|+-.+... ..+..+++.+.. + ...++ .+
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~--------~~~~~~~v~V~~-DG~~~t~~-------aG 153 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDG--------ELDADTDVTVPV-DGIRRTVP-------AG 153 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TT--------SSB-SS-EEEEE-TTEEEEE--------TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCC--------ccccCCCeEEec-CCcEEEec-------CC
Confidence 356777899999999988743333322334445565544211 001112221100 0 00111 23
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEE
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIA 399 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIa 399 (406)
-+.+|.|||-+=+|+|-||.-......|-
T Consensus 154 ~~l~L~PGESiTL~Pg~yH~Fw~e~g~vL 182 (225)
T PF07385_consen 154 TQLRLNPGESITLPPGIYHWFWGEGGDVL 182 (225)
T ss_dssp -EEEE-TT-EEEE-TTEEEEEEE-TTSEE
T ss_pred ceEEeCCCCeEeeCCCCeeeEEecCCCEE
Confidence 68899999999999999999888765543
No 68
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=65.20 E-value=46 Score=31.95 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.7
Q ss_pred EEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 372 ECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
..+|++||.+|+|++=-|...|..+
T Consensus 99 ~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 99 THELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred EEEECCCCEEEECCCCCEEEEECCC
Confidence 5699999999999999999999864
No 69
>PRK13502 transcriptional activator RhaR; Provisional
Probab=63.59 E-value=36 Score=32.43 Aligned_cols=27 Identities=7% Similarity=0.109 Sum_probs=22.0
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCcc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~s 397 (406)
-+..+.|||+++||++=.|.....++.
T Consensus 56 ~~~~l~~g~l~li~~~~~H~~~~~~~~ 82 (282)
T PRK13502 56 RPYRITRGDLFYIRAEDKHSYTSVNDL 82 (282)
T ss_pred EEEeecCCcEEEECCCCcccccccCCc
Confidence 467899999999999999987765543
No 70
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=62.20 E-value=6.5 Score=34.70 Aligned_cols=17 Identities=41% Similarity=0.782 Sum_probs=12.7
Q ss_pred EEEEEcCCCEEEeCCCC
Q 042108 371 IECICKAGEVIFVPNGW 387 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gW 387 (406)
-..+.+|||+||||.|-
T Consensus 113 ~~~~A~~GDvi~iPkGs 129 (152)
T PF06249_consen 113 QTVTAKPGDVIFIPKGS 129 (152)
T ss_dssp EEEEEETT-EEEE-TT-
T ss_pred EEEEEcCCcEEEECCCC
Confidence 57789999999999984
No 71
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=60.53 E-value=4 Score=45.19 Aligned_cols=96 Identities=23% Similarity=0.286 Sum_probs=60.6
Q ss_pred cCCCCCcceecCCCCcceEEEEEeEEEE------EEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcE
Q 042108 298 PAGSGSSFHMDPNSTSAWNAIIKGSKKW------ILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPI 371 (406)
Q Consensus 298 ~~gs~t~~H~D~~~t~~~~~qi~G~K~w------~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~ 371 (406)
.++..|.+|.+...|+..+-++.|.|.. +-.+.+... ..... .-..+ ....| ..... .....
T Consensus 481 ~~~~~tdf~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~-~~~~~----~~~~~--~~~~~ 548 (776)
T KOG1633|consen 481 MKGRYTDFHVDFSGTSVYLEGIKGEKPSGKEIFALPSPTETNE----ASRQA-TESKK-DFSRV----RGDSA--NCDDK 548 (776)
T ss_pred cccccceeEeccCCcccccccccccccccchhhcccccCcccc----hhhhh-hhccc-cchhc----ccccc--cCCCc
Confidence 3688999999999999888889888732 222222211 11000 00111 11111 11111 12335
Q ss_pred EEEEcCCCEEEeCCCCeeeeeecCccEEEeeecc
Q 042108 372 ECICKAGEVIFVPNGWWHLVINLEESIAITQNYV 405 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv 405 (406)
..++++||..++|+||.|+|..--++++...||.
T Consensus 549 ~~~~~~g~~~~~P~~~i~~~~~p~~~~~~~~~~~ 582 (776)
T KOG1633|consen 549 RDVLKEGETGLIPAGPIHAVLTPVDSLSFGGNFL 582 (776)
T ss_pred cccccCCCcccCCCCccccccccccccccccchh
Confidence 6789999999999999999999988888887774
No 72
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=59.14 E-value=47 Score=33.23 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=44.5
Q ss_pred eccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEE
Q 042108 296 IGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECIC 375 (406)
Q Consensus 296 iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl 375 (406)
+-++|..+..|..... ..+.+|.|+=+-++ ..-.+..
T Consensus 256 ~L~~G~~t~~~r~T~s--~Vf~VieG~G~s~i-----------------------------------------g~~~~~W 292 (335)
T TIGR02272 256 LLPKGFRTATYRSTDA--TVFCVVEGRGQVRI-----------------------------------------GDAVFRF 292 (335)
T ss_pred ccCCCCCCCCcccccc--EEEEEEeCeEEEEE-----------------------------------------CCEEEEe
Confidence 4456777778877654 78888888755444 0135678
Q ss_pred cCCCEEEeCCCCeeeeeecCccEEEe
Q 042108 376 KAGEVIFVPNGWWHLVINLEESIAIT 401 (406)
Q Consensus 376 ~pGD~LfIP~gWwH~V~nl~~sIavt 401 (406)
++||++.||+.-+|.-.|.++++-++
T Consensus 293 ~~gD~f~vPsW~~~~h~a~~da~Lf~ 318 (335)
T TIGR02272 293 SPKDVFVVPSWHPVRFEASDDAVLFS 318 (335)
T ss_pred cCCCEEEECCCCcEecccCCCeEEEE
Confidence 89999999998788777777765443
No 73
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=57.46 E-value=70 Score=28.72 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred eeEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEE
Q 042108 293 WVIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIE 372 (406)
Q Consensus 293 ~l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~ 372 (406)
|++.=++|..|+.|=+.. +..|..++.|.=+=..|-..... .. +.. .....
T Consensus 78 ~ll~W~pGq~S~IHDH~~-s~g~~~vl~G~l~e~~y~~~~~~--~~----------------------~~~----~~~~~ 128 (175)
T PF05995_consen 78 WLLCWPPGQRSPIHDHGG-SWGWVKVLSGELEETRYRRPDDG--GA----------------------PLE----LVGRE 128 (175)
T ss_dssp EEEEE-TT-B--EEE-TT-SEEEEEEEESEEEEEEEEESTSS--S-----------------------EEE----ECEEE
T ss_pred EEEEeCCCCcCCCCCCCC-ceEEEEEecceEEEEEeccCCcc--cC----------------------ccc----ccCce
Confidence 444447899999997754 45789999998655544433210 00 000 01234
Q ss_pred EEEcCCCEEEeCCCCeeeeeecC-ccEEEee
Q 042108 373 CICKAGEVIFVPNGWWHLVINLE-ESIAITQ 402 (406)
Q Consensus 373 ~vl~pGD~LfIP~gWwH~V~nl~-~sIavt~ 402 (406)
..+.+|.+.+.+.+..|.|.|.. +..|||.
T Consensus 129 ~~~~~g~~~~~~~~~iH~v~n~s~~~~avSL 159 (175)
T PF05995_consen 129 RLLPGGVTYIFDPHGIHRVENPSGDEPAVSL 159 (175)
T ss_dssp EEETTTEEEEBTTTBEEEEEES-SSS-EEEE
T ss_pred EecCCCeEEecCCCCeEEeccCCCCCCEEEE
Confidence 55777777788999999998874 5555553
No 74
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=57.04 E-value=20 Score=31.81 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=22.3
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecC-ccEEEeeec
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLE-ESIAITQNY 404 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~-~sIavt~nF 404 (406)
..+.|++||+|.||+|-+|-..--+ +.|..-.-|
T Consensus 115 iri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF 149 (157)
T PF03079_consen 115 IRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLF 149 (157)
T ss_dssp EEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEE
T ss_pred EEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEee
Confidence 5689999999999999999986433 455544333
No 75
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=56.81 E-value=8.1 Score=37.92 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.4
Q ss_pred EEEEEcCCCEEEeCCCCeee
Q 042108 371 IECICKAGEVIFVPNGWWHL 390 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~ 390 (406)
-.+.++|||++|||+|-.|.
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred cccccCCCCEEEeCCCCccc
Confidence 46789999999999999998
No 76
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=56.01 E-value=8.3 Score=33.91 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=14.4
Q ss_pred EEEEEcCCCEEEeCCCC
Q 042108 371 IECICKAGEVIFVPNGW 387 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gW 387 (406)
-.++-+|||++|||.|=
T Consensus 136 ~tv~a~aGDvifiPKgs 152 (176)
T COG4766 136 RTVIAGAGDVIFIPKGS 152 (176)
T ss_pred CeEecCCCcEEEecCCC
Confidence 36678999999999984
No 77
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=55.30 E-value=35 Score=30.69 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=37.2
Q ss_pred ceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeC
Q 042108 305 FHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVP 384 (406)
Q Consensus 305 ~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP 384 (406)
+|.|.. .-..|.|.-.|.+-+++. +.+...|++||.|-||
T Consensus 92 ~H~d~E----vRy~vaG~GiF~v~~~d~------------------------------------~~~~i~c~~gDLI~vP 131 (181)
T COG1791 92 LHTDDE----VRYFVAGEGIFDVHSPDG------------------------------------KVYQIRCEKGDLISVP 131 (181)
T ss_pred ccCCce----EEEEEecceEEEEECCCC------------------------------------cEEEEEEccCCEEecC
Confidence 366654 567788887777766553 2368889999999999
Q ss_pred CCCeeeeeecC
Q 042108 385 NGWWHLVINLE 395 (406)
Q Consensus 385 ~gWwH~V~nl~ 395 (406)
+|-.|--.-.+
T Consensus 132 ~gi~HwFtlt~ 142 (181)
T COG1791 132 PGIYHWFTLTE 142 (181)
T ss_pred CCceEEEEccC
Confidence 99999865443
No 78
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.45 E-value=27 Score=34.12 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=29.2
Q ss_pred cEEEEEcCCCEEEeCCCCeeeeeecCc---cEEEeeeccC
Q 042108 370 PIECICKAGEVIFVPNGWWHLVINLEE---SIAITQNYVS 406 (406)
Q Consensus 370 ~~~~vl~pGD~LfIP~gWwH~V~nl~~---sIavt~nFv~ 406 (406)
...+.|++||+|+.=..-||....-.. =+|++.+|++
T Consensus 192 ~~pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~ 231 (299)
T COG5285 192 AVPVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTV 231 (299)
T ss_pred ceeeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEee
Confidence 368899999999999999999865543 4778877763
No 79
>PLN00212 glutelin; Provisional
Probab=52.63 E-value=71 Score=33.75 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=50.7
Q ss_pred eEeccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEE
Q 042108 294 VIIGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIEC 373 (406)
Q Consensus 294 l~iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~ 373 (406)
+-|.| ++....||.. +.-+..+++|+=..-++-|+... -|-.. ..+-. .+- -......++ .+--.-
T Consensus 85 ~~i~p-~gL~lP~y~n--a~~liyV~qG~G~~G~v~pGcpe--T~~~~-----~~~~~-~~~-~~~~~~~~d--~hqkv~ 150 (493)
T PLN00212 85 RVIEP-QGLLLPRYSN--TPGLVYIIQGRGSMGLTFPGCPA--TYQQQ-----FQQFL-TEG-QSQSQKFRD--EHQKIH 150 (493)
T ss_pred EEecC-CcccCccccC--CCeEEEEEeCeEEEEEEeCCCcc--hhhhh-----ccccc-ccc-ccccccccc--ccccce
Confidence 34554 4444555552 33688999999999988776543 22100 00000 000 000000110 111245
Q ss_pred EEcCCCEEEeCCCCeeeeeecCcc
Q 042108 374 ICKAGEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 374 vl~pGD~LfIP~gWwH~V~nl~~s 397 (406)
.++.||++.||+|--|...|-+++
T Consensus 151 ~lr~GDViaiPaG~~hw~yN~Gd~ 174 (493)
T PLN00212 151 QFRQGDVVALPAGVAHWFYNDGDA 174 (493)
T ss_pred EeccCCEEEECCCCeEEEEeCCCC
Confidence 789999999999999999999774
No 80
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.66 E-value=30 Score=33.92 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=42.4
Q ss_pred CCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCC
Q 042108 299 AGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAG 378 (406)
Q Consensus 299 ~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pG 378 (406)
+|-.++-|.+... |+-.+|.|+--|+.+. + -...+++|
T Consensus 101 PGEvApsHrHsqs--AlRFvveG~Ga~T~Vd-------------G---------------------------er~~M~~G 138 (351)
T COG3435 101 PGEVAPSHRHNQS--ALRFVVEGKGAYTVVD-------------G---------------------------ERTPMEAG 138 (351)
T ss_pred CcccCCccccccc--ceEEEEeccceeEeec-------------C---------------------------ceeeccCC
Confidence 5778888999776 9999999986555422 1 24568899
Q ss_pred CEEEeCCCCeeeeeec
Q 042108 379 EVIFVPNGWWHLVINL 394 (406)
Q Consensus 379 D~LfIP~gWwH~V~nl 394 (406)
|.|..|++=||.--|.
T Consensus 139 DfilTP~w~wHdHgn~ 154 (351)
T COG3435 139 DFILTPAWTWHDHGNE 154 (351)
T ss_pred CEEEccCceeccCCCC
Confidence 9999999999987776
No 81
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=48.86 E-value=20 Score=32.05 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.5
Q ss_pred cEEEEEcCCCEEEeCCCCeeeeeecC
Q 042108 370 PIECICKAGEVIFVPNGWWHLVINLE 395 (406)
Q Consensus 370 ~~~~vl~pGD~LfIP~gWwH~V~nl~ 395 (406)
.+.+-++.||+|++|+|-+|-.....
T Consensus 115 WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 115 WIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred EEEEEEecCCEEEecCcceeeeecCc
Confidence 47889999999999999999876554
No 82
>PLN02288 mannose-6-phosphate isomerase
Probab=47.19 E-value=15 Score=37.67 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.3
Q ss_pred EEEEcCCCEEEeCCCCeeeeeec
Q 042108 372 ECICKAGEVIFVPNGWWHLVINL 394 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl 394 (406)
.+.|+|||.||+|+|=.|.-+.-
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G 274 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSG 274 (394)
T ss_pred eEecCCCCEEEecCCCCceecCC
Confidence 67899999999999999987654
No 83
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=42.27 E-value=94 Score=28.53 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.8
Q ss_pred cEEEEEcCCCEEEeCCCCeeeeeecCccEEE
Q 042108 370 PIECICKAGEVIFVPNGWWHLVINLEESIAI 400 (406)
Q Consensus 370 ~~~~vl~pGD~LfIP~gWwH~V~nl~~sIav 400 (406)
.-+..|+||+.+-+|+|-||....-+..|-|
T Consensus 152 g~~lkL~PGesitL~Pg~~HsFwae~g~vlv 182 (225)
T COG3822 152 GSQLKLSPGESITLPPGLYHSFWAEEGGVLV 182 (225)
T ss_pred ceeEEECCCCcEecCCCceeeeeecCCcEEE
Confidence 3578899999999999999998887655444
No 84
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=42.16 E-value=1.1e+02 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeec
Q 042108 371 IECICKAGEVIFVPNGWWHLVINL 394 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl 394 (406)
-...+.|||+++||+|=.|.....
T Consensus 61 ~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 61 KRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred EEEEECCCcEEEeCCCCccceeee
Confidence 366899999999999999977543
No 85
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.83 E-value=96 Score=30.60 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=44.4
Q ss_pred eccCCCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEE
Q 042108 296 IGPAGSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECIC 375 (406)
Q Consensus 296 iG~~gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl 375 (406)
+=++|-.+..|..... .++.+++|+-+-++ ....+.-
T Consensus 267 lL~~Gf~~~~~r~t~s--~iy~V~eGsg~~~I-----------------------------------------g~~rf~~ 303 (351)
T COG3435 267 LLPPGFHGKAHRHTDS--TIYHVVEGSGYTII-----------------------------------------GGERFDW 303 (351)
T ss_pred hcCCcccCCceeccCC--EEEEEEecceeEEE-----------------------------------------CCEEeec
Confidence 3456777777777765 67777777755444 0134455
Q ss_pred cCCCEEEeCCCCeeeeee-cCccEEEee
Q 042108 376 KAGEVIFVPNGWWHLVIN-LEESIAITQ 402 (406)
Q Consensus 376 ~pGD~LfIP~gWwH~V~n-l~~sIavt~ 402 (406)
.+||+..||+.-||...| -++++-++.
T Consensus 304 ~~~D~fvVPsW~~~~~~~gs~da~LFsf 331 (351)
T COG3435 304 SAGDIFVVPSWAWHEHVNGSEDAVLFSF 331 (351)
T ss_pred cCCCEEEccCcceeecccCCcceEEEec
Confidence 779999999999999999 456665554
No 86
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=41.68 E-value=16 Score=32.33 Aligned_cols=18 Identities=28% Similarity=0.846 Sum_probs=15.0
Q ss_pred EEEEEcCCCEEEeCCCCe
Q 042108 371 IECICKAGEVIFVPNGWW 388 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWw 388 (406)
....|+|||++|||..++
T Consensus 148 ~n~~L~~gD~I~Vp~~~f 165 (165)
T TIGR03027 148 ANVELKPGDVLIIPESWF 165 (165)
T ss_pred CCceeCCCCEEEEecccC
Confidence 356799999999998764
No 87
>PRK13501 transcriptional activator RhaR; Provisional
Probab=38.53 E-value=37 Score=32.66 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=22.2
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
....+++||+++||+|=.|.+...++
T Consensus 56 ~~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 56 HPYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred eeeeecCCeEEEEcCCCcccccccCC
Confidence 46789999999999999999876554
No 88
>PRK11171 hypothetical protein; Provisional
Probab=36.41 E-value=38 Score=32.58 Aligned_cols=26 Identities=12% Similarity=-0.080 Sum_probs=23.4
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-+..|++||+|++|++=-|...|..+
T Consensus 223 ~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 223 DWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEEeCCCCEEEECCCCCEEEECCCC
Confidence 47789999999999999999999854
No 89
>PHA02989 ankyrin repeat protein; Provisional
Probab=35.66 E-value=34 Score=35.70 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.3
Q ss_pred ccccCCCHHHHHHHhcCCCHHHHHHHHHHhHHHHHh
Q 042108 62 GNLQTLTDELVIDVLGFLDATQLGVLATVSKSFYVF 97 (406)
Q Consensus 62 g~l~~Lpdelll~il~~Ld~~~L~~l~~~~r~~y~~ 97 (406)
..+..||.|+...||++|+-.||..+..-.|.-+.|
T Consensus 457 ~~w~~LP~Eik~~Il~~L~~~dl~~i~~~~~~~~~~ 492 (494)
T PHA02989 457 NYWMYLPIEIQINILEYLTFSDFKTILKFKKKSKKY 492 (494)
T ss_pred cHHHhCCHHHHHHHHHcCCHHHHHHHHhhhhhhHhh
Confidence 457789999999999999999999988866665544
No 90
>PF12852 Cupin_6: Cupin
Probab=34.93 E-value=37 Score=30.37 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 372 ECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
...|++||++++|.|=.|....-..
T Consensus 56 ~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 56 PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 4689999999999999999865543
No 91
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=30.83 E-value=1.8e+02 Score=28.37 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=22.1
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
-+.++.|||+++|+++=.|.....++
T Consensus 64 ~~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 64 EKVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEEEcCCcEEEEecCCcccccccCC
Confidence 57789999999999999998776554
No 92
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=30.82 E-value=2.5e+02 Score=24.52 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=38.6
Q ss_pred CCCCcceecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCC
Q 042108 300 GSGSSFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGE 379 (406)
Q Consensus 300 gs~t~~H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD 379 (406)
|+...+|.=..+++-.+.+++|+-...+=-+ ..-+..+..||
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~--------------------------------------~G~el~v~~GD 93 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGA--------------------------------------DGQELEVGEGD 93 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCC--------------------------------------CCceeeecCCC
Confidence 4455665555556677777777766655211 22466778899
Q ss_pred EEEeCCCCeeeeeecC
Q 042108 380 VIFVPNGWWHLVINLE 395 (406)
Q Consensus 380 ~LfIP~gWwH~V~nl~ 395 (406)
+|.||+|-=|.-..-.
T Consensus 94 vlliPAGvGH~rl~sS 109 (163)
T COG4297 94 VLLIPAGVGHCRLHSS 109 (163)
T ss_pred EEEEecCcccccccCC
Confidence 9999999999765443
No 93
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=30.55 E-value=83 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCcc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEES 397 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~s 397 (406)
-+.++.+|++.+||+|=.....|+.+.
T Consensus 51 ~~f~v~~G~~F~VP~gN~Y~i~N~~~~ 77 (85)
T PF11699_consen 51 TSFVVTKGGSFQVPRGNYYSIKNIGNE 77 (85)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEE-SSS
T ss_pred cEEEEeCCCEEEECCCCEEEEEECCCC
Confidence 478899999999999999999998653
No 94
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=30.11 E-value=43 Score=33.66 Aligned_cols=27 Identities=22% Similarity=0.665 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCEEEeCCCCeeeeeecC
Q 042108 369 RPIECICKAGEVIFVPNGWWHLVINLE 395 (406)
Q Consensus 369 ~~~~~vl~pGD~LfIP~gWwH~V~nl~ 395 (406)
-++.+.+++|+++|.|+-|.|.|.+-.
T Consensus 359 ~~l~v~~~~~~~~~l~~~~~~~~~~~~ 385 (437)
T KOG2508|consen 359 VPLVVDLEPGDMLYLPASWFHEVTSSS 385 (437)
T ss_pred eeEEEecccCceeeechhheeeeeccc
Confidence 458899999999999999999998764
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=30.00 E-value=1.6e+02 Score=28.44 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=41.7
Q ss_pred eecCCCCcceEEEEEeEEEEEEeCCCCCCCCcccCCCCCcccCCCchhhhhhhhhhhhhcCCCCcEEEEEcCCCEEEeCC
Q 042108 306 HMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAEVACPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPN 385 (406)
Q Consensus 306 H~D~~~t~~~~~qi~G~K~w~L~pP~~~~~~l~p~~d~~~v~sp~~~~~w~~~~~p~~~~~~~~~~~~vl~pGD~LfIP~ 385 (406)
|...-+|...+.+++|+=.++.|..+... ...+.....++.-+||+
T Consensus 27 H~t~~g~~~~~~vl~G~l~~~~~de~g~~----------------------------------~~~~~l~~~~~~~~i~p 72 (287)
T PRK12335 27 HNTKEGTWAKLTVLKGELKFYELTEDGEE----------------------------------LSEHIFDAENQPPFIEP 72 (287)
T ss_pred cCCCCCcceEEEEEeeeEEEEEECCCCCe----------------------------------eeEEEEecCCCCceeCC
Confidence 44434566899999999999998543221 00123334455656899
Q ss_pred CCeeeeeecCccEEEeeec
Q 042108 386 GWWHLVINLEESIAITQNY 404 (406)
Q Consensus 386 gWwH~V~nl~~sIavt~nF 404 (406)
+=||.+..+++.+.....|
T Consensus 73 ~~wh~v~~~s~d~~~~l~f 91 (287)
T PRK12335 73 QAWHRIEAASDDLECQLSF 91 (287)
T ss_pred cceEEEEEcCCCcEEEEEE
Confidence 9999999987655544433
No 96
>PRK13500 transcriptional activator RhaR; Provisional
Probab=29.91 E-value=67 Score=31.41 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=22.3
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
....+.+||+++||+|=.|...+.++
T Consensus 86 ~~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 86 RPYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred EEEeecCCeEEEECCCCeecccccCC
Confidence 47789999999999999999877554
No 97
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.63 E-value=30 Score=32.72 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=13.4
Q ss_pred EEcCCCEEEeCCCCe
Q 042108 374 ICKAGEVIFVPNGWW 388 (406)
Q Consensus 374 vl~pGD~LfIP~gWw 388 (406)
.|+|||++|||..|+
T Consensus 225 ~l~~gDii~V~~s~~ 239 (239)
T TIGR03028 225 LVQPDDVIYVRESLF 239 (239)
T ss_pred ccCCCCEEEEeCccC
Confidence 489999999999885
No 98
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.93 E-value=41 Score=34.58 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.9
Q ss_pred cccCCCHHHHHHHhcCCCHHHHHHHHHHhH
Q 042108 63 NLQTLTDELVIDVLGFLDATQLGVLATVSK 92 (406)
Q Consensus 63 ~l~~Lpdelll~il~~Ld~~~L~~l~~~~r 92 (406)
.+..||.|+...||++|+-.||..+..-+.
T Consensus 447 ~w~~lP~Eik~~Il~~l~~~dl~~~~~~~~ 476 (480)
T PHA03100 447 YWNILPIEIKYKILEYLSNRDLKSLIENFT 476 (480)
T ss_pred chhhCcHHHHHHHHHhCCHHHHHHHHhhhc
Confidence 577899999999999999999988766543
No 99
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.57 E-value=79 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.200 Sum_probs=21.4
Q ss_pred EEcCCCEEEeCCCCeeeeeecCccEE
Q 042108 374 ICKAGEVIFVPNGWWHLVINLEESIA 399 (406)
Q Consensus 374 vl~pGD~LfIP~gWwH~V~nl~~sIa 399 (406)
...+||.++.|.|--|...+.+.|+-
T Consensus 61 ~~~~G~~~~~p~g~~h~~~s~~gc~~ 86 (91)
T PF12973_consen 61 RYGAGDWLRLPPGSSHTPRSDEGCLI 86 (91)
T ss_dssp EEETTEEEEE-TTEEEEEEESSCEEE
T ss_pred cCCCCeEEEeCCCCccccCcCCCEEE
Confidence 44789999999999999999877664
No 100
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=26.10 E-value=33 Score=34.77 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=18.4
Q ss_pred EEEEcCCCEEEeCCCCeeeeeec
Q 042108 372 ECICKAGEVIFVPNGWWHLVINL 394 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl 394 (406)
.+.|+|||.+|+|+|=.|....-
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~G 273 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLSG 273 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEEE
T ss_pred EEEecCCceEEecCCCccccccc
Confidence 45899999999999999998763
No 101
>PRK13503 transcriptional activator RhaS; Provisional
Probab=23.61 E-value=1.8e+02 Score=27.42 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=18.5
Q ss_pred EEEEcCCCEEEeCCCCeeeeeecCc
Q 042108 372 ECICKAGEVIFVPNGWWHLVINLEE 396 (406)
Q Consensus 372 ~~vl~pGD~LfIP~gWwH~V~nl~~ 396 (406)
...+.+||+++||++=.|...+.++
T Consensus 54 ~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 54 PYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred cccccCCcEEEECCCccchhhhccC
Confidence 4567788888888888887665543
No 102
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=21.60 E-value=65 Score=36.71 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=72.3
Q ss_pred cceeEeccCCCCCcceecCCCCcceEEEEE-eEEEEEEeCCCCCCC------CcccCCCCCcccCCCchhhhhhh-hhhh
Q 042108 291 YRWVIIGPAGSGSSFHMDPNSTSAWNAIIK-GSKKWILFPPDVVPP------GVHPSSDGAEVACPVSIMEWFMN-FYGA 362 (406)
Q Consensus 291 ~~~l~iG~~gs~t~~H~D~~~t~~~~~qi~-G~K~w~L~pP~~~~~------~l~p~~d~~~v~sp~~~~~w~~~-~~p~ 362 (406)
..|+++|..-+...+|.+...+.-+|-+-. ..|.|.-+|+....- ...|.... ..|......... --+-
T Consensus 330 ~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~~---~~pd~~~~~~~~~~p~~ 406 (904)
T KOG1246|consen 330 VPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLFI---EQPDLLHALVTLMSPNF 406 (904)
T ss_pred cccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcccc---cCcccccccccccCcch
Confidence 458999999999999999877766655544 479999999987530 01111000 011000000000 0111
Q ss_pred hhcCCCCcEEEEEcCCCEEEeCCCCeeeeeecCccEEEeeeccC
Q 042108 363 TKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVS 406 (406)
Q Consensus 363 ~~~~~~~~~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt~nFv~ 406 (406)
+...+.+.+..+++||+.++.=+.-+|...|-..+.+-..||++
T Consensus 407 l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap 450 (904)
T KOG1246|consen 407 LTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAP 450 (904)
T ss_pred hhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCC
Confidence 22234567899999999999989999999999887777777753
No 103
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=21.05 E-value=1.4e+02 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=26.2
Q ss_pred EEEEEcCCCEEEeCCCCeeeeeecCccEEEe
Q 042108 371 IECICKAGEVIFVPNGWWHLVINLEESIAIT 401 (406)
Q Consensus 371 ~~~vl~pGD~LfIP~gWwH~V~nl~~sIavt 401 (406)
..+.+.+|++|+.|+.-+|.|.....++-++
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~ 171 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVA 171 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeeccCccEEE
Confidence 5778899999999999999999887665444
No 104
>PHA02875 ankyrin repeat protein; Provisional
Probab=20.01 E-value=51 Score=33.29 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=23.0
Q ss_pred ccccCCCHHHHHHHhcCCCHHHHHHH
Q 042108 62 GNLQTLTDELVIDVLGFLDATQLGVL 87 (406)
Q Consensus 62 g~l~~Lpdelll~il~~Ld~~~L~~l 87 (406)
..+..||.|+...||++|+-+||..+
T Consensus 385 ~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 385 SKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred cchhcCcHHHHHHHHHHhccchhhhh
Confidence 45778999999999999999999765
Done!