BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042109
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1
Length = 230
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 50/60 (83%)
Query: 1 SATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
+A+G L AEAVSTSRRALRASK+PES+FTTLPNGLKYYD+KVG G A KGSRVAV
Sbjct: 70 TASGILSTGSAEAVSTSRRALRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVH 129
>sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic
OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2
Length = 232
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 3 TGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL 61
T F V + + + RR+ + IP E++T P GLK+YD++ G GPVA +GS V
Sbjct: 59 TSFFVLTPSSSEARERRSRKV--IPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHF 115
>sp|Q54NB6|FKBP4_DICDI FK506-binding protein 4 OS=Dictyostelium discoideum GN=fkbp4 PE=1
SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 20 ALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
A+ K P S TLP+GL+Y D+ VG GP K G +V V+
Sbjct: 243 AVVEKKKPTSSVVTLPSGLQYEDLVVGSGPSPKSGKKVGVK 283
>sp|Q9LDY5|FK172_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic
OS=Arabidopsis thaliana GN=FKBP17-2 PE=1 SV=1
Length = 247
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 2 ATGFLVCDVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVRL 61
A G + + + S+ + E + LPNG++YYD +VGGG + G V + L
Sbjct: 89 AFGVISEQIKTRIEVSQEVANTRDVEEEKEIVLPNGIRYYDQRVGGGATPRAGDLVVIDL 148
>sp|P0CP98|FKBP4_CRYNJ FK506-binding protein 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=FPR4 PE=3
SV=1
Length = 405
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 22 RASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
+ +K P+ + TLP+GL D+K+G GPVAK G R+ +R
Sbjct: 289 KEAKAPQKK--TLPSGLIIEDIKIGDGPVAKTGKRLGMR 325
>sp|P0CP99|FKBP4_CRYNB FK506-binding protein 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=FPR4 PE=3 SV=1
Length = 405
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 22 RASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
+ +K P+ + TLP+GL D+K+G GPVAK G R+ +R
Sbjct: 289 KEAKAPQKK--TLPSGLIIEDIKIGDGPVAKTGKRLGMR 325
>sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic
OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 24 SKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRVAV 59
+K+ ++T +GL+Y D++VG GP+AKKG +V V
Sbjct: 105 TKMKYPDYTETQSGLQYKDLRVGTGPIAKKGDKVVV 140
>sp|P0C1J6|FKBP4_RHIO9 FK506-binding protein 4 OS=Rhizopus delemar (strain RA 99-880 /
ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=FKBP4 PE=3
SV=1
Length = 382
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 32 TTLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
T LPNGL D+K+G G K G RV +R
Sbjct: 273 TKLPNGLIIEDIKMGEGASCKNGQRVGMR 301
>sp|Q8LB65|FK173_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-3, chloroplastic
OS=Arabidopsis thaliana GN=FKBP17-3 PE=2 SV=1
Length = 234
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 26 IPESEFTTLPNGLKYYDVKVGGGPVAKKG 54
+ + E LPNG++YYD++VG G G
Sbjct: 102 LEKQEEIILPNGIRYYDLQVGSGATPSSG 130
>sp|Q6FKH7|FKBP3_CANGA FK506-binding protein 3 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FPR3 PE=3
SV=1
Length = 437
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 33 TLPNGLKYYDVKVGGGPVAKKGSRVAVR 60
TL G+ D VG GP AKKG RV +R
Sbjct: 330 TLEGGVVIEDRTVGDGPAAKKGDRVGMR 357
>sp|P45895|CHSS2_CAEEL Chondroitin sulfate synthase 2 OS=Caenorhabditis elegans GN=mig-22
PE=2 SV=1
Length = 804
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 9 DVAEAVSTSRRALRASKIPESEFTTLPNGLKYYDVKVG 46
DVAE V +R+ + + + PE EF L NG + +D + G
Sbjct: 411 DVAEVVVAARQQVESEE-PELEFVQLRNGYRVFDPRRG 447
>sp|P59724|FKBP3_VICFA FKBP-type peptidyl-prolyl cis-trans isomerase, chloroplastic
(Fragment) OS=Vicia faba PE=1 SV=1
Length = 45
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 23 ASKIPESEFTTLPNGLKYYDVKVGGGPVAKKGSRV 57
A+++ E T P+GL + D VG GP A KG +
Sbjct: 1 AAEVAPCELTVAPSGLSFCDKVVGTGPQAVKGQLI 35
>sp|Q6FK71|FKBP4_CANGA FK506-binding protein 4 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FPR4 PE=3
SV=1
Length = 398
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 34 LPNGLKYYDVKVGGGPVAKKGSRVAVR 60
L G+ D K+G GP AKKGS+V +R
Sbjct: 292 LEGGVIIEDRKIGEGPKAKKGSKVGMR 318
>sp|Q6C4C9|FKBP3_YARLI FK506-binding protein 3 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=FPR3 PE=3 SV=1
Length = 407
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 27 PESEFTT--LPNGLKYYDVKVGGGPVAKKGSRVAVR 60
P+ + T L G+K D VG GP AK GS+V VR
Sbjct: 292 PKPKLVTRQLEGGVKIEDRTVGEGPSAKVGSKVGVR 327
>sp|O22870|FK163_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic
OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2
Length = 223
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 5 FLVCDVAEAVSTSRRALRASKIP------------ESEFTTLP-----NGLKYYDVKVGG 47
LV V+ +S S A A+ +P E E +P +GL+Y D+KVG
Sbjct: 58 LLVLGVSGGLSMSSLAAYAAGLPPEDKPRLCEAECEKELENVPMVTTESGLQYKDIKVGR 117
Query: 48 GPVAKKGSRVA 58
GP G +VA
Sbjct: 118 GPSPPVGFQVA 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,717,201
Number of Sequences: 539616
Number of extensions: 584655
Number of successful extensions: 1523
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 19
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)