BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042110
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23627|SYGM1_ARATH Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana
GN=GLYRS-1 PE=2 SV=1
Length = 729
Score = 348 bits (892), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 181/253 (71%), Positives = 204/253 (80%), Gaps = 13/253 (5%)
Query: 5 AASEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAM-NEKEAL------------GM 51
A S+KSG LVA+EKF+EP+EVEKLVI PVKKEL L N+K + M
Sbjct: 468 AHSDKSGTPLVAEEKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEM 527
Query: 52 KATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCL 111
KATLESKGEVEFYV L K+V IKKNM+ ISKEKKKE QRVFTPSVIEPS GI RIIYCL
Sbjct: 528 KATLESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCL 587
Query: 112 CEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171
EHCF RPSKAGDEQLN+FRFPPLVAPIKCTVF LVQNQQ+EEVAKVIS+ L+ GISH
Sbjct: 588 YEHCFSTRPSKAGDEQLNLFRFPPLVAPIKCTVFPLVQNQQFEEVAKVISKELASVGISH 647
Query: 172 KIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231
KIDITG SIGKRYARTDELGVP AITVDS +SVTIRERDSKDQ+RV + + AS+V ++++
Sbjct: 648 KIDITGTSIGKRYARTDELGVPFAITVDSDTSVTIRERDSKDQVRVTLKEAASVVSSVSE 707
Query: 232 GQRTWEDVWANSP 244
G+ TW+DVWA P
Sbjct: 708 GKMTWQDVWATFP 720
>sp|Q5I0G4|SYG_RAT Glycine--tRNA ligase (Fragment) OS=Rattus norvegicus GN=Gars PE=1
SV=1
Length = 637
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 140/253 (55%), Gaps = 24/253 (9%)
Query: 12 VALVAQEKFSEPREVEKLVIAPVK----------KELALE---AMNEKEALGMKATLESK 58
V LVA++ EP+ V + P K +L LE A +E M+ L K
Sbjct: 376 VPLVAEKPLKEPKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLGACDECYITEMELLLSEK 435
Query: 59 GEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYR 118
GE F + GK + K+M+ + + +K PSVIEPS G+ RI+Y + EH F+
Sbjct: 436 GE--FTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHV 493
Query: 119 RPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA 178
R GDEQ F FP +VAP KC+V L QNQ++ K +SE+L+ G+SHK+D +
Sbjct: 494 R---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSG 550
Query: 179 SIGKRYARTDELGVPCAITVD------STSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232
SIG+RYARTDE+GV IT+D + + T+R+RDS Q+R V ++ S+V+ L +G
Sbjct: 551 SIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSVVRDLANG 610
Query: 233 QRTWEDVWANSPF 245
TW DV A P
Sbjct: 611 NITWADVEARYPL 623
>sp|Q9CZD3|SYG_MOUSE Glycine--tRNA ligase OS=Mus musculus GN=Gars PE=1 SV=1
Length = 729
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 138/253 (54%), Gaps = 24/253 (9%)
Query: 12 VALVAQEKFSEPREVEKLVIAPVKKELA-------------LEAMNEKEALGMKATLESK 58
V LVA++ EP+ V + P K + L A +E M+ L K
Sbjct: 468 VPLVAEKPLKEPKTVNVVQFEPNKGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEK 527
Query: 59 GEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYR 118
GE F + GK + K+M+ + + +K PSVIEPS G+ RI+Y + EH F+
Sbjct: 528 GE--FTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHV 585
Query: 119 RPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA 178
R GDEQ F FP +VAP KC+V L QNQ++ K +SE+L+ G+SHK+D +
Sbjct: 586 R---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRNGVSHKVDDSSG 642
Query: 179 SIGKRYARTDELGVPCAITVD------STSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232
SIG+RYARTDE+GV IT+D + + T+R+RDS Q+R V ++ ++V+ L +G
Sbjct: 643 SIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLANG 702
Query: 233 QRTWEDVWANSPF 245
TW DV A P
Sbjct: 703 NITWADVEARYPL 715
>sp|P41250|SYG_HUMAN Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3
Length = 739
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 141/253 (55%), Gaps = 24/253 (9%)
Query: 12 VALVAQEKFSEPREVEKLVIAPVK----------KELALEAM---NEKEALGMKATLESK 58
V LVA++ EP+ V + P K +L +E + +E M+ L K
Sbjct: 478 VPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEK 537
Query: 59 GEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYR 118
GE F + GK + K+M+ + + +K + P+VIEPS G+ RI+Y + EH F+
Sbjct: 538 GE--FTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHV 595
Query: 119 RPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA 178
R GDEQ F FP +VAP KC+V L QNQ++ K +SE+L+ G+SHK+D +
Sbjct: 596 R---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSG 652
Query: 179 SIGKRYARTDELGVPCAITVD------STSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232
SIG+RYARTDE+GV +T+D + + T+R+RDS Q+R + ++ SIV+ L +G
Sbjct: 653 SIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANG 712
Query: 233 QRTWEDVWANSPF 245
TW DV A P
Sbjct: 713 NITWADVEARYPL 725
>sp|Q5RBL1|SYG_PONAB Glycine--tRNA ligase OS=Pongo abelii GN=GARS PE=2 SV=1
Length = 739
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 141/253 (55%), Gaps = 24/253 (9%)
Query: 12 VALVAQEKFSEPREVEKLVIAPVK----------KELALEAM---NEKEALGMKATLESK 58
V LVA++ EP+ V + P K +L +E + +E M+ L K
Sbjct: 478 VPLVAEKPLKEPKTVNVVQFEPNKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEK 537
Query: 59 GEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYR 118
GE F + GK + K+M+ + + +K + P+VIEPS G+ RI+Y + EH F+
Sbjct: 538 GE--FTIETEGKTFQLTKDMVNVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHV 595
Query: 119 RPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA 178
R GDEQ F FP +VAP KC+V L QNQ++ K +SE+L+ G+SHK+D +
Sbjct: 596 R---EGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSG 652
Query: 179 SIGKRYARTDELGVPCAITVD------STSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232
SIG+RYARTDE+GV +T+D + + T+R+RDS Q+R V ++ SIV+ L +G
Sbjct: 653 SIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPSIVRDLANG 712
Query: 233 QRTWEDVWANSPF 245
TW DV A P
Sbjct: 713 NITWADVEARYPL 725
>sp|Q04451|SYG_BOMMO Glycine--tRNA ligase OS=Bombyx mori PE=1 SV=2
Length = 680
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 138/256 (53%), Gaps = 23/256 (8%)
Query: 7 SEKSGVALVAQEKFSEPREVEKL--------VIAPVKKEL-----ALEAMNEKEALGMKA 53
++ +G+ L A++K P+++E + + KK+ L ++ M+
Sbjct: 417 TKATGIRLAAEKKLPAPKQIEVVEAIANNGRIGKAFKKDSQAINDTLATLDNAALEEMQK 476
Query: 54 TLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCE 113
L+S GE + + +++ + K +K PSVIEPS G+ RI+YC+ E
Sbjct: 477 ELDSNGEYTLITAR--GEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILE 534
Query: 114 HCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173
H F R GDEQ F PP VAP+KC V L N +++ + +S+ L +SHK+
Sbjct: 535 HNFRMR---EGDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKV 591
Query: 174 DITGASIGKRYARTDELGVPCAITVDSTS-----SVTIRERDSKDQMRVHVDDVASIVKA 228
D + SIG+RYARTDELGVP A+TVD + +VT+RERDS Q+R+ + DV ++V+
Sbjct: 592 DDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRD 651
Query: 229 LTDGQRTWEDVWANSP 244
L++ + W DV P
Sbjct: 652 LSNSKILWSDVEQKYP 667
>sp|Q10039|SYG_CAEEL Glycine--tRNA ligase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2
Length = 742
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 135/255 (52%), Gaps = 26/255 (10%)
Query: 10 SGVALVAQEKFSEPREVEKLVIAPVKKELALEAMN-EKEALGMKATLE-------SKGEV 61
+ V LVA++K EP +V + +AL + +K+A ++ +L+ S E
Sbjct: 486 TNVKLVAEKKLPEPVDVN---FVEAQANMALLGKSFKKDAKKIQTSLQQLTSEQVSALEE 542
Query: 62 EFYVRKL------GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHC 115
E +KL G+N + L I K KK + TPSVIEPS GI RI+Y L EH
Sbjct: 543 ELLAKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIMYALLEHS 602
Query: 116 FYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDI 175
F +R GDEQ F PLVAPIKC+V + N V + E LS +S+K+D
Sbjct: 603 FRQR---EGDEQRTFLAFKPLVAPIKCSVLPISANDTLIPVMDAVKEELSRFEMSYKVDD 659
Query: 176 TGASIGKRYARTDELGVPCAITVDSTS------SVTIRERDSKDQMRVHVDDVASIVKAL 229
+ +IG+RYARTDE+G+P ITVD S +VTIR ++ Q+R+ V ++ ++ L
Sbjct: 660 SSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAETMSQIRLEVSELGRLISDL 719
Query: 230 TDGQRTWEDVWANSP 244
G++ W D A P
Sbjct: 720 VAGRQQWSDAQAKYP 734
>sp|P38088|SYG_YEAST Glycine--tRNA ligase 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GRS1 PE=1 SV=3
Length = 690
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 128/249 (51%), Gaps = 20/249 (8%)
Query: 7 SEKSGVALVAQEKFSEPREVEKLVIAPVKK-------------ELALEAMNEKEALGMKA 53
S+K+ LV ++K P EV K I KK E L M++ +
Sbjct: 426 SKKTKEKLVVRQKLDNPIEVTKWEIDLTKKLFGPKFRKDAPKVESHLLNMSQDDLASKAE 485
Query: 54 TLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCE 113
L++ G+ V + V + ++ I + K E R + PSVIEPS GI RIIY + E
Sbjct: 486 LLKANGKFTIKVDGVDGEVELDDKLVKIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFE 545
Query: 114 HCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173
H F+ RP D +V FPPLVAP K + L ++ V +++ L + I KI
Sbjct: 546 HSFWNRPE---DNARSVLSFPPLVAPTKVLLVPLSNHKDLVPVTTEVAKILRKSQIPFKI 602
Query: 174 DITGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKAL 229
D +G SIGKRYAR DELG P +T+D S SVT+RERDS Q+R V++V ++ +
Sbjct: 603 DDSGVSIGKRYARNDELGTPFGVTIDFESAKDHSVTLRERDSTKQVRGSVENVIKAIRDI 662
Query: 230 TDGQRTWED 238
T +WE+
Sbjct: 663 TYNGASWEE 671
>sp|Q10179|SYG_SCHPO Putative glycine--tRNA ligase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=grs1 PE=3 SV=1
Length = 652
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 9/209 (4%)
Query: 37 ELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPS 96
E A+ + E E + A L ++G++ V G ++ +++ I K K E R +TP+
Sbjct: 439 EEAMISWPESEKVEKSAQLVAEGKIIVNVN--GVEHTVESDLVTIEKRKHTEHIRTYTPN 496
Query: 97 VIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEV 156
VIEPS G+ RI+Y L EH ++ RP D V FP +APIK + L +N ++
Sbjct: 497 VIEPSFGLGRILYVLMEHAYWTRPE---DVNRGVLSFPASIAPIKALIVPLSRNAEFAPF 553
Query: 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVTIRERDSK 212
K +S L GIS+KID + A+IG+RYAR DELG P +TVD ++T+RERDS
Sbjct: 554 VKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFETLQNETITLRERDST 613
Query: 213 DQMRVHVDDVASIVKALTDGQRTWEDVWA 241
Q+R D+V + + ++ +G+ ++ED A
Sbjct: 614 KQVRGSQDEVIAALVSMVEGKSSFEDALA 642
>sp|Q8TYY9|SYG_METKA Glycine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=glyS PE=3 SV=1
Length = 571
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 24/242 (9%)
Query: 7 SEKSGVALVAQEKFSEPREVEKLVIAPVKKELA----LEAMNEKEALGMKATLESKGEVE 62
SE SG L A + EP+ V + PV KEL +A EAL + T ES+ E++
Sbjct: 339 SEHSGEDLRAFRELEEPKIVYR--PEPVMKELGPRFKSDAPKIAEAL-RRITAESEDELK 395
Query: 63 --FYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRP 120
V GK V + I KEK F P VIEPS GIDRI+YC+ EH F
Sbjct: 396 GGLTVEVDGKEVEVPPECYEIVKEKVT--GERFYPHVIEPSYGIDRILYCVLEHNF---- 449
Query: 121 SKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASI 180
D + VFRFP +API+ VF L++ E A+ ++ L G + + D +G SI
Sbjct: 450 ----DPEEGVFRFPAWLAPIEVGVFPLLKRSDMVEYARRVARMLREEGFTVEYDDSG-SI 504
Query: 181 GKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTDGQRTW 236
G+RYAR DE+GVP +TVD + +VTIR+RD+ +Q+RV VD++A +++ L DG +
Sbjct: 505 GRRYARADEIGVPYCVTVDHETLEDDTVTIRDRDTTEQVRVEVDELADVLRGLIDGDLEF 564
Query: 237 ED 238
E+
Sbjct: 565 EE 566
>sp|Q06817|SYG2_YEAST Glycine--tRNA ligase 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GRS2 PE=1 SV=1
Length = 618
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 128/258 (49%), Gaps = 24/258 (9%)
Query: 7 SEKSGVALVAQEKFSEPREVEKLVIAPVKK-------------ELALEAMNEKEALGMKA 53
S+K+G +L ++K P+E + V+ KK E L ++ E +
Sbjct: 363 SKKTGRSLTVKQKLDTPKERTEWVVEVNKKFFGSKFKQKAKLIESVLSKFSQDELIRRHE 422
Query: 54 TLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCE 113
LE GE F + G+ V + +++ I + + R + P+VIEPS G+ RIIYC+ +
Sbjct: 423 ELEKNGE--FTCQVNGQIVKLDSSLVTIKMKTTLQHIREYIPNVIEPSFGLGRIIYCIFD 480
Query: 114 HCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173
HCF R E F FP +APIK V T+ N + + K IS++L I KI
Sbjct: 481 HCFQVR---VDSESRGFFSFPLQIAPIKVFVTTISNNDGFPAILKRISQALRKREIYFKI 537
Query: 174 DITGASIGKRYARTDELGVPCAITVD----STSSVTIRERDSKDQMRVHVDDVASIVKAL 229
D + SIGK+YAR DELG P IT+D +VT+RER+S Q+R + DV S + +
Sbjct: 538 DDSNTSIGKKYARNDELGTPFGITIDFETIKDQTVTLRERNSMRQVRGTITDVISTIDKM 597
Query: 230 TDGQRTWEDVWANSPFPI 247
E W S F +
Sbjct: 598 LHNPD--ESDWDKSTFGL 613
>sp|Q8SQZ6|SYG_ENCCU Glycine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU10_1790 PE=1 SV=1
Length = 579
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 121/238 (50%), Gaps = 16/238 (6%)
Query: 10 SGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLG 69
S V L + + +EP+E+E+ V+ KKE + + L S+ +E V +G
Sbjct: 346 SKVDLRCKRRLAEPKEIEEWVLKLDKKEWGAKLRDRFSVLMETVNGLSQKYIEKNVVSIG 405
Query: 70 KN---VCIKKNMLLI----SKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSK 122
+N + +K + I S+ KKK F P VIEPS GI RI+Y L EH FY R
Sbjct: 406 ENRNRLSVKFDEYTINIECSRVKKKVFVENVIPDVIEPSFGIGRILYALIEHSFYLR--- 462
Query: 123 AGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGK 182
++ VFRF P +AP++C + L+ ++ E I L+ G+ ++ SIG+
Sbjct: 463 --EDSRPVFRFKPAIAPVQCAIGYLIHFDEFNEHILNIKRFLTDNGLVVHVNERSCSIGR 520
Query: 183 RYARTDELGVPCAITVD----STSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTW 236
+Y+ DELG+P IT D VTIRERDS Q+RV V+ SIV GQ W
Sbjct: 521 KYSSCDELGIPFFITFDPDFLKDRMVTIRERDSMQQIRVDVEKCPSIVLEYIRGQSRW 578
>sp|A6VIK1|SYG_METM7 Glycine--tRNA ligase OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=glyS PE=3 SV=1
Length = 574
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 13/195 (6%)
Query: 37 ELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPS 96
E +L+ +N+K+ + LE++G+ + ++ ++ I K L K KK P
Sbjct: 386 EESLKELNDKKMEELVEALETEGK--YVLKTCKRDFEILKEYLTAKKVKKIVKGEKIIPH 443
Query: 97 VIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEV 156
VIEPS GIDRI YC+ EH F +E V F V+PIK VF LV + E+
Sbjct: 444 VIEPSYGIDRITYCVMEHAFKE------EEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEI 497
Query: 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSK 212
A + L G+ + D +GA IG+RY R DE+G P +T+D + SVTIRERDS+
Sbjct: 498 AMDLKNKLRENGLIAEYDDSGA-IGRRYMRMDEVGTPFCVTIDGETLTDRSVTIRERDSR 556
Query: 213 DQMRVHVDDVASIVK 227
+Q R+ +++V S +K
Sbjct: 557 EQFRIPINEVVSYIK 571
>sp|Q6M0Q7|SYG_METMP Glycine--tRNA ligase OS=Methanococcus maripaludis (strain S2 / LL)
GN=glyS PE=3 SV=1
Length = 574
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 37 ELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPS 96
E +L+ +++K+ + LE++G+ + ++ ++ I K L K KK P
Sbjct: 386 EESLKELDDKKMEELVEALETEGK--YVLKTCKRDFEILKEYLTAKKVKKIVKGEKIIPH 443
Query: 97 VIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEV 156
VIEPS GIDRI YC+ EH F DE V F V+PIK VF LV + E+
Sbjct: 444 VIEPSYGIDRITYCVMEHAFKE------DEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEI 497
Query: 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSK 212
A + L G+ + D +GA IG+RY R DE+G P IT+D + SVTIRERDS+
Sbjct: 498 AMDLKNKLRENGLIAEYDDSGA-IGRRYMRMDEVGTPFCITIDGETLKDRSVTIRERDSR 556
Query: 213 DQMRVHVDDVASIVK 227
+Q R+ +++V +K
Sbjct: 557 EQFRIPINEVVPYIK 571
>sp|Q57681|SYG_METJA Glycine--tRNA ligase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=glyS PE=3 SV=1
Length = 577
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 123/240 (51%), Gaps = 26/240 (10%)
Query: 5 AASEKSGVALVAQEKFSEPREVE--------KLVIAPVKKEL-ALEA----MNEKEALGM 51
+ S SGV L + E RE+E K+V KK+ A+EA ++EKE
Sbjct: 342 SHSAHSGVELSVFVELDEEREIETYEINLNYKVVGKIFKKDTKAIEAYINNLSEKEKEEF 401
Query: 52 KATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCL 111
+E+ G+V + GK I K+ + I K KK P VIEPS GIDRI YCL
Sbjct: 402 VKNIENDGKVIINID--GKEFEILKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCL 459
Query: 112 CEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171
EH + + P +APIK V LV ++AK I + L GI
Sbjct: 460 LEHSYREEEDRV------YLDLKPSIAPIKAYVLPLVNKDDMPKIAKEIEQMLRENGIIA 513
Query: 172 KIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVK 227
+ D +GA IG+RY R DE+GVP ITVD + +VT+RER++++Q+RV +D++ +K
Sbjct: 514 EYDDSGA-IGRRYMRADEIGVPFCITVDGQTLEDRTVTVRERNTREQVRVKIDELVDYLK 572
>sp|A9A885|SYG_METM6 Glycine--tRNA ligase OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=glyS PE=3 SV=1
Length = 574
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 37 ELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPS 96
E +L+ +++K+ + LE++G+ + ++ ++ + K L K KK P
Sbjct: 386 EESLKELDDKKMEELVEALETEGK--YTLKTCKRDFELLKEYLTAKKVKKIVKGEKIIPH 443
Query: 97 VIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEV 156
VIEPS GIDRI YC+ EH F +E V F V+PIK VF LV + E+
Sbjct: 444 VIEPSYGIDRITYCVMEHAFKE------EEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEI 497
Query: 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSK 212
A + L G+ + D +GA IG+RY R DE+G P IT+D + SVTIRERDS+
Sbjct: 498 AMDLKNKLRENGLIAEYDDSGA-IGRRYMRMDEVGTPFCITIDGETLVDNSVTIRERDSR 556
Query: 213 DQMRVHVDDVASIVK 227
Q R+ +++V S +K
Sbjct: 557 AQFRIPINEVVSYIK 571
>sp|A6URK3|SYG_METVS Glycine--tRNA ligase OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=glyS PE=3 SV=1
Length = 574
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 120/238 (50%), Gaps = 22/238 (9%)
Query: 5 AASEKSGVALVAQEKFSEPREVE--------KLVIAPVKKELAL--EAMNEKEALGMKAT 54
A + SG L +F E +E+E KLV K + + E++ E M+
Sbjct: 341 AHMKNSGEDLSVFVEFDESKEIEVYEIELNYKLVGKTFKGDAKILEESLKELSNDKMEEL 400
Query: 55 LESKGEVEFYVRKLGK-NVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCE 113
+++ E Y+ K K + + L + K KK P VIEPS GIDRI YC+ E
Sbjct: 401 IKTLKNNEKYILKTCKRDFEVLNEYLTVKKVKKNVTGEKIVPHVIEPSYGIDRITYCVIE 460
Query: 114 HCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173
H F K D++ + F V+P+K VF LV + +E+A+ + GI +
Sbjct: 461 HAF-----KEEDDR-TLLAFVNTVSPVKVGVFPLVNKEGMDEIAENLKNKFRKNGIIAEY 514
Query: 174 DITGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVK 227
D +GA IG+RY R DE+G P +TVD + +VTIRERDS++Q R+ +D V +K
Sbjct: 515 DDSGA-IGRRYMRMDEIGTPFCVTVDGETLKDNTVTIRERDSREQFRIPLDGVVDYIK 571
>sp|A4FZX1|SYG_METM5 Glycine--tRNA ligase OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=glyS PE=3 SV=1
Length = 575
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 37 ELALEAMNEKEALGMKATLESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPS 96
E +L+ +++K+ + LE++G+ + + ++ + K L K KK P
Sbjct: 386 EESLKELDDKKMEELVEALETEGK--YVLSTCKRDFELLKEYLTAKKVKKTVKGEKIIPH 443
Query: 97 VIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEV 156
VIEPS GIDRI YC+ EH F DE V F V+PIK VF LV + E+
Sbjct: 444 VIEPSYGIDRITYCVMEHAFKE------DEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEI 497
Query: 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVTIRERDSK 212
A + L G+ + D +GA IG+RY R DE+G P +T+D + SSVTIRERDS+
Sbjct: 498 AMDLKNKLRENGLIAEYDDSGA-IGRRYMRMDEVGTPFCVTIDGETLTDSSVTIRERDSR 556
Query: 213 DQMRVHVDDVASIVK 227
+Q R+ +++V +K
Sbjct: 557 EQFRIPINEVVPYIK 571
>sp|O27874|SYG_METTH Glycine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=glyS PE=3 SV=1
Length = 565
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 16/234 (6%)
Query: 5 AASEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFY 64
+ S+ SG L ++ EPR + K + P +L + + + + E+E
Sbjct: 337 SHSQHSGEDLRVFIEYDEPRRIRKRAVKPDMGKLGPKFRKDAARIASALSEVDVEEIEKA 396
Query: 65 VRKLGKNVCIKKNMLLISKEKKKEFQRVFT-----PSVIEPSSGIDRIIYCLCEHCFYRR 119
+ + G+ + + +L ++ + V T P VIEPS GIDRIIY L H
Sbjct: 397 LDEEGRFILEGEFEILPDDVSFEDVEEVVTGRKVYPHVIEPSFGIDRIIYTLLLH----- 451
Query: 120 PSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS 179
S D + FR PP VAP++ TV LV ++ A I +L +G + D +G +
Sbjct: 452 -SLVDDGERTYFRLPPHVAPVEVTVLPLVNREEMVMTALEIERNLRRSGFIAEFDSSG-T 509
Query: 180 IGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKAL 229
IG+RYAR DE+GVP A+TVD + +VT+R RD Q+RV ++++ ++ L
Sbjct: 510 IGRRYARADEIGVPFAVTVDHETLEDGTVTLRNRDDCSQVRVKIEELVPTLEKL 563
>sp|A0B5U4|SYG_METTP Glycine--tRNA ligase OS=Methanosaeta thermophila (strain DSM 6194 /
PT) GN=glyS PE=3 SV=1
Length = 577
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 69 GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQL 128
G+ I++ ++ + + +++ P VIEPS GIDRI+Y + EH ++ P + DE
Sbjct: 400 GETYEIERRLVSVEEIEEEIRGEYVVPHVIEPSFGIDRILYTVLEHSYHEEPVE--DEMR 457
Query: 129 NVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTD 188
V RF P ++PI + L+ + E A+ I + G+ + D +G SIG+RY R D
Sbjct: 458 VVLRFLPGISPIDVAILPLMDKDELVEPARRIFDEFRRCGMLAEFDTSG-SIGRRYRRND 516
Query: 189 ELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTDG 232
E+G P ITVD + +VT+R+RD+ Q+R+ D I++ L G
Sbjct: 517 EIGTPYCITVDYQTLEDGTVTVRDRDTMQQIRIEADRAVDIIRDLMSG 564
>sp|O29346|SYG_ARCFU Glycine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=glyS PE=3
SV=1
Length = 570
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 19/234 (8%)
Query: 7 SEKSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEK-------EALGMKATLESKG 59
S+ SG L + EP +V++ I P+ +L E + EAL ++A L+
Sbjct: 328 SKFSGEDLSVFVPYEEPVKVKRRKIVPILSKLGPEFRQKAKKVAEALEALNVEADLD--- 384
Query: 60 EVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRR 119
EVE V G+ V + K I + +++ P VIEPS G+DRI Y + EH F +
Sbjct: 385 EVEVEVD--GEKVKVTKEFFEIQEVEEEVTGEKVIPHVIEPSFGLDRITYSVLEHAFDK- 441
Query: 120 PSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS 179
E+ V R V+PI+ V L+ + +E I + L GI D +G S
Sbjct: 442 -DVVDGEERRVLRLKRWVSPIEVAVLPLLSREPFESKGMEIVQMLREEGIFTDYDDSG-S 499
Query: 180 IGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKAL 229
IG+RY R DE+G P +TVD + +VTIR+RD+ Q+RV + ++ SI+K L
Sbjct: 500 IGRRYRRFDEIGTPFCVTVDHQTFEDETVTIRDRDTTAQVRVKLGELPSILKEL 553
>sp|Q9YBF8|SYG_AERPE Glycine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=glyS PE=3 SV=1
Length = 583
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 13/175 (7%)
Query: 66 RKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGD 125
R + V + L I + ++K R F P V+EPS G DR +Y E+ + +
Sbjct: 406 RAVVAGVELPPGSLRIVEVEEKVSGRRFVPHVVEPSFGTDRNVYVALEYAYREVEGRV-- 463
Query: 126 EQLNVFRFPPLVAPIKCTVFTLVQN-QQYEEVAKVISESLSVAGISHKIDITGASIGKRY 184
V FP +AP++ V LV+N ++ E A+++ E+L AG + D +G SIG+RY
Sbjct: 464 ----VLAFPRDIAPVQAVVLPLVENDEKLVERARMVYETLVEAGFTVYYDDSG-SIGRRY 518
Query: 185 ARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVAS-IVKALTDGQR 234
AR DE+GVP A+T+D + +VT+R+RD+ Q+R+ D+V + + + DG R
Sbjct: 519 ARADEIGVPAAVTIDYQTLEDGTVTLRDRDTWRQVRIGADEVVDKLRRFIYDGAR 573
>sp|Q72L85|SYG_THET2 Glycine--tRNA ligase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=glyQS PE=3 SV=1
Length = 506
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ- 151
F P VIEPS+G+DR + L F R G+E++ V + P +APIK V LV+N+
Sbjct: 354 FVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRP 412
Query: 152 QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS--------- 202
+ E AK + L G+ + +IGK Y R DE+G P A+TVD +
Sbjct: 413 EITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTT 472
Query: 203 ----SVTIRERDSKDQMRVHVDDVASIVK 227
+VT+R+RD+ +Q+R+HVD++ ++
Sbjct: 473 RLKDTVTVRDRDTMEQIRLHVDELEGFLR 501
>sp|P56206|SYG_THET8 Glycine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=glyQS PE=1 SV=3
Length = 506
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ- 151
F P VIEPS+G+DR + L F R G+E++ V + P +APIK V LV+N+
Sbjct: 354 FVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERI-VLKLKPQLAPIKVAVIPLVKNRP 412
Query: 152 QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS--------- 202
+ E AK + L G+ + +IGK Y R DE+G P A+TVD +
Sbjct: 413 EITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTT 472
Query: 203 ----SVTIRERDSKDQMRVHVDDVASIVK 227
+VT+R+RD+ +Q+R+HVD++ ++
Sbjct: 473 RLKDTVTVRDRDTMEQIRLHVDELEGFLR 501
>sp|Q7UEU9|SYG_RHOBA Glycine--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=glyQS PE=3 SV=2
Length = 536
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 19/170 (11%)
Query: 66 RKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRI-IYCLCE-HCFYRRPSKA 123
R GK++ + + I+ EK F P VIEPS+G DR + LCE + P +
Sbjct: 373 RGSGKDLAYRDD---ITNEK-------FVPHVIEPSAGADRAALAFLCEAYTEDEAPDEN 422
Query: 124 GDEQL-NVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGK 182
G Q V + P +APIK VF LV+ EVA+ I +L + D GA +G+
Sbjct: 423 GKMQTRTVMKLDPRLAPIKAAVFPLVKKDGMPEVAQEIYGALK-EHYNVFYDAKGA-VGR 480
Query: 183 RYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKA 228
RY R DE G P ITVD S +VTIR+RD+ +Q RV +DDV S +++
Sbjct: 481 RYRRQDEAGTPYCITVDGDSLTDKTVTIRDRDTLEQTRVKIDDVVSEIQS 530
>sp|Q8G7W9|SYG_BIFLO Glycine--tRNA ligase OS=Bifidobacterium longum (strain NCC 2705)
GN=glyQS PE=3 SV=1
Length = 490
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 8/150 (5%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFY--RRP-SKAGDEQLNVFRFPPLVAPIKCTVFTLVQ 149
+ P VIEP++G+ R + C + P +K G ++ V R P +AP+K V L +
Sbjct: 316 YVPYVIEPAAGLTRSLMCFLVDAYDVDEAPNTKGGVDKRTVLRLDPRLAPVKAAVLPLSK 375
Query: 150 NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVT 205
+ + VA+ +++ L D +GA IG+RY R DE+G P ITVD + +VT
Sbjct: 376 KPELQTVAQNLADDLRFNEWMIDYDESGA-IGRRYRRQDEIGTPLCITVDFDTLEDHAVT 434
Query: 206 IRERDSKDQMRVHVDDVASIVKALTDGQRT 235
IRERD+ Q RV +D VA V A +RT
Sbjct: 435 IRERDTMAQERVALDKVADYVAARIGEKRT 464
>sp|Q6F1J8|SYG_MESFL Glycine--tRNA ligase OS=Mesoplasma florum (strain ATCC 33453 / NBRC
100688 / NCTC 11704 / L1) GN=glyQS PE=3 SV=1
Length = 451
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 83/138 (60%), Gaps = 9/138 (6%)
Query: 95 PSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYE 154
P VIEPS G++R++ + ++ G+ ++ V + P +AP + V L Q QQ +
Sbjct: 317 PHVIEPSVGVERMMLAILWQAYHEEDLGEGNSRI-VMKLPYNLAPYQIAVMPL-QKQQND 374
Query: 155 EVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVTIRERD 210
+ + S L+ +++ D TG ++GKRY R D +G P ITVD T+SVT+RERD
Sbjct: 375 QAQALYSNLLNNFDVTY--DETG-NVGKRYRRQDAIGTPFVITVDFDTPETNSVTVRERD 431
Query: 211 SKDQMRVHVDDVASIVKA 228
S +Q+R+++D++ + +KA
Sbjct: 432 SMEQVRINLDELEAYLKA 449
>sp|Q8U0G2|SYG_PYRFU Glycine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=glyS PE=3 SV=1
Length = 568
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 19/235 (8%)
Query: 10 SGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKLG 69
SG L + +P+ V+KL + K++ + + + + K S+ E+ V +L
Sbjct: 341 SGADLTVMIHYDKPKIVKKLNVTLNMKKVGPKLKEKVKEINEKLKSMSQEELRKLVEELN 400
Query: 70 KN--VCIKKNML----LISKEKKKEFQ-RVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSK 122
N V I+ + L LI KE +++ Q P V+EPS GIDR Y L E+ S
Sbjct: 401 ANGKVIIEGHELEKEDLIIKEVEEKIQGEKIVPHVLEPSFGIDRPFYLLLEN------SL 454
Query: 123 AGDEQLNVF-RFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIG 181
DE V+ + +API+ V LV + +A I +L G D SIG
Sbjct: 455 TVDEDGRVYLKIKKDMAPIEVAVLPLVAKEPLTTIAYEIYRNLQKEGFIVVYD-EKDSIG 513
Query: 182 KRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTDG 232
KRY R DE+G P +TVD+ + +VTIR+RD+++Q+RV +++V +K L G
Sbjct: 514 KRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEEVPRKLKELIFG 568
>sp|Q9V176|SYG_PYRAB Glycine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=glyS PE=3 SV=1
Length = 571
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 19/235 (8%)
Query: 10 SGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMKATLESKGEVEFYVRKL- 68
SG L + +P+ V++L ++ K + + + + + K S+ E+ V+KL
Sbjct: 343 SGADLTVMIHYDKPKIVKRLKVSLNMKSVGPKLKKDAKRINEKIQAMSEEELRELVKKLN 402
Query: 69 --GKNVC----IKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSK 122
GK V + K+ +I + ++K P V+EPS GIDR Y L E+ S
Sbjct: 403 EEGKIVIDGYELSKDDFIIKEVEEKVTGEKIIPHVLEPSFGIDRPFYLLLEN------SL 456
Query: 123 AGDEQLNVF-RFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIG 181
DE ++ + +API+ V LV + ++A + L G D SIG
Sbjct: 457 TIDEDGRIYLKIKKDMAPIEVAVLPLVAKEPLTKIAYDLFRKLQKEGFIVVYD-EKDSIG 515
Query: 182 KRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTDG 232
KRY R DE+G P +T+D+ + +VTIR+RD+++Q+RV ++DV +K L G
Sbjct: 516 KRYMRYDEIGTPYCVTIDNQTPIDGTVTIRDRDTREQIRVKLEDVPRKLKELIFG 570
>sp|Q9RSR5|SYG_DEIRA Glycine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC 13939
/ DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=glyQS PE=3 SV=2
Length = 506
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 15/155 (9%)
Query: 88 EFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTL 147
E + P VIEPS+G+DR + + F + + G+E++ V + P +APIK V L
Sbjct: 350 ETNKPVVPFVIEPSAGVDRAMLAVLSEAFTKETLENGNERI-VLKLKPHLAPIKVAVIPL 408
Query: 148 VQN-QQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS---- 202
+N ++ +VAK I L G+ + +IGK Y R DE+G P +TVD +
Sbjct: 409 ARNREEITDVAKAIKAELQGLGLGRVLYEDSGNIGKAYRRHDEVGTPYCVTVDFDTVGLG 468
Query: 203 ---------SVTIRERDSKDQMRVHVDDVASIVKA 228
+VT+R+RD+ Q RV + ++A ++A
Sbjct: 469 ENTDESLKDTVTVRDRDTLAQERVKISELAGWIQA 503
>sp|O59235|SYG_PYRHO Glycine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=glyS PE=3
SV=1
Length = 570
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 31/241 (12%)
Query: 10 SGVALVAQEKFSEPREVEKLVIAPVKKELA-------------LEAMNEKEALGMKATLE 56
SG L + +P+ V+++ ++ K++ +++M++KE + L
Sbjct: 343 SGADLTVMIHYDKPKVVKRIQVSLNMKKVGPKLKADAKKINEIIKSMDQKELEKLVKDLN 402
Query: 57 SKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCF 116
KG+V +L K I K + E+K +++ P V+EPS GIDR Y L E+
Sbjct: 403 EKGKVTIEGYELSKEDFIVKEV-----EEKITGEKI-VPHVLEPSFGIDRPFYLLLEN-- 454
Query: 117 YRRPSKAGDEQLNVF-RFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDI 175
S DE ++ + +API+ V LV + +A I +L G D
Sbjct: 455 ----SLTVDEDGRIYLKIKKDMAPIEVAVLPLVAKEPLTTIAYEIYRTLQKEGFIVVYD- 509
Query: 176 TGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTD 231
SIGKRY R DE+G P +TVD+ + +VTIR+RD+++Q+RV ++++ +K L
Sbjct: 510 EKDSIGKRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEELPRKLKELIF 569
Query: 232 G 232
G
Sbjct: 570 G 570
>sp|Q1IXM3|SYG_DEIGD Glycine--tRNA ligase OS=Deinococcus geothermalis (strain DSM 11300)
GN=glyQS PE=3 SV=1
Length = 504
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 67 KLGKNVCIKKNMLLISKEK--KKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAG 124
+LG +++N ++K E + P VIEPS+G+DR + + + + + G
Sbjct: 327 ELGIQARVEENFDSVAKLTIPHPETNKPVVPFVIEPSAGVDRAMLAVLAEAYTKETLENG 386
Query: 125 DEQLNVFRFPPLVAPIKCTVFTLVQN-QQYEEVAKVISESLSVAGISHKIDITGASIGKR 183
E++ V + P +APIK V L +N ++ VAK I L G+ + +IGK
Sbjct: 387 SERI-VLKLKPHLAPIKVAVIPLARNREEITSVAKAIKAKLQSLGLGRVLYEDSGNIGKA 445
Query: 184 YARTDELGVPCAITVDS-----------TSSVTIRERDSKDQMRVHVDDVASIVKA 228
Y R DE+G P +TVD T +VT+R+RD+ Q RV + ++A+ ++A
Sbjct: 446 YRRHDEVGTPYCVTVDFETVGKGEDPALTDTVTVRDRDTLGQERVRISELANWLQA 501
>sp|C6A317|SYG_THESM Glycine--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=glyS PE=3 SV=1
Length = 570
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 19/236 (8%)
Query: 9 KSGVALVAQEKFSEPREVEKLVIAPVKKELALEAMNEKEALGMK---ATLESKGEVEFYV 65
+SG L + EP+ ++KL I+ K + + + + + K T E ++ +
Sbjct: 342 ESGADLTVMIHYKEPKIIKKLKISLNMKRVGPKLKGDAKRINQKLQEMTQEELKKIFEGL 401
Query: 66 RKLGKNVC----IKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPS 121
K+GK ++K +I + ++K P V+EPS GIDR Y L E+ S
Sbjct: 402 EKIGKVFLDGYELEKEDFIIKEVEEKVHGEKLVPHVLEPSFGIDRPFYLLLEN------S 455
Query: 122 KAGDEQLNVF-RFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASI 180
DE V+ + +API+ V LV + +A I +L G D ++
Sbjct: 456 IVMDEDSRVYLKIKKDMAPIEVAVLPLVAKEPLTSIAYEIFRTLQKEGFIVVYD-EKDTV 514
Query: 181 GKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKALTDG 232
G+RYAR DE+G P +T+D+ + +VTIR+RD+++Q+RV ++++ ++ L G
Sbjct: 515 GRRYARYDEIGTPYCVTIDNQTPEDNTVTIRDRDTREQIRVKIEELPEKLRELIFG 570
>sp|Q72PW7|SYG_LEPIC Glycine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=glyQS PE=3 SV=1
Length = 464
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQ 152
+ P V+EP+ G++R+ + + G E V RF P +AP+K VF L++
Sbjct: 326 YVPFVVEPALGVNRLFLAVVTDAYEEEKLPDG-ETRTVLRFSPKIAPVKAAVFPLMKKDG 384
Query: 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVTIRE 208
E ++ I LS G D G +IGKRY R DE+G P ITVD ++VT+RE
Sbjct: 385 LPEKSREIFADLSKLGNIEYDD--GGAIGKRYRRQDEIGTPFCITVDYDTLKDNTVTVRE 442
Query: 209 RDSKDQMRVHVDDVAS 224
RDS Q R+ V+ + +
Sbjct: 443 RDSMSQERIAVNQLKN 458
>sp|Q8F6C0|SYG_LEPIN Glycine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=glyQS
PE=3 SV=1
Length = 464
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQ 152
+ P V+EP+ G++R+ + + G E V RF P +AP+K +F L++
Sbjct: 326 YVPFVVEPALGVNRLFLAVVTDAYEEEKLPDG-ETRTVLRFSPKIAPVKAAIFPLMKKDG 384
Query: 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRE 208
E ++ I LS G D G +IGKRY R DE+G P ITVD + +VT+RE
Sbjct: 385 LPEKSREIFADLSKLGNIEYDD--GGAIGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRE 442
Query: 209 RDSKDQMRVHVDDVAS 224
RDS Q R+ V+ + +
Sbjct: 443 RDSMSQERIAVNQLKN 458
>sp|C5A1H0|SYG_THEGJ Glycine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=glyS PE=3 SV=1
Length = 570
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 74 IKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRF 133
++K+ +I + ++K P V+EPS GIDR Y L E+ S +E +
Sbjct: 414 LEKDDFIIREVEEKITGEKIVPHVLEPSFGIDRPFYLLLEN------SLVIEEDRTYLKL 467
Query: 134 PPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVP 193
+API+ V LV + + +A I L AG D +IG+RY R DE+G P
Sbjct: 468 KKDMAPIEVAVLPLVAKEPLKSIAYEIFRKLQKAGFIVVYD-EKDTIGRRYLRYDEIGTP 526
Query: 194 CAITVDST----SSVTIRERDSKDQMRVHVDDVASIVKALTDGQ 233
+T+D+ S+VTIR+RD+++Q+RV ++++ S ++ L G+
Sbjct: 527 YCVTIDNQTPEDSTVTIRDRDTREQVRVSIEELPSKLRELIFGE 570
>sp|O51344|SYG_BORBU Glycine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=glyQS PE=3 SV=1
Length = 445
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 16/154 (10%)
Query: 80 LISKEKKKEFQRVFTPSVIEPSSGIDR-IIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVA 138
L++KEK + P VIE S+G+ R ++ LC+ + GD+++ V R P +A
Sbjct: 292 LLTKEK-------YVPYVIETSAGLTRSVLMTLCD-AYSEEELSDGDKRI-VLRLHPKLA 342
Query: 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITV 198
P K +F LV+ + E+A+ I + + H +IGKRY R DE+G P +T+
Sbjct: 343 PYKIAIFPLVKKVELTEIARRIY--MELCDDFHIFYDDSGTIGKRYRRQDEIGTPYCVTI 400
Query: 199 DSTS----SVTIRERDSKDQMRVHVDDVASIVKA 228
D + +VT+RER+S Q R+ ++D+ S +K
Sbjct: 401 DYNTIEDETVTVRERNSMTQKRIFINDLYSYIKT 434
>sp|B7J1U3|SYG_BORBZ Glycine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=glyQS
PE=3 SV=1
Length = 445
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 16/154 (10%)
Query: 80 LISKEKKKEFQRVFTPSVIEPSSGIDR-IIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVA 138
L++KEK + P VIE S+G+ R ++ LC+ + GD+++ V R P +A
Sbjct: 292 LLTKEK-------YVPYVIETSAGLTRSVLMTLCD-AYSEEELSDGDKRI-VLRLHPKLA 342
Query: 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITV 198
P K +F LV+ + E+A+ I + + H +IGKRY R DE+G P +T+
Sbjct: 343 PYKIAIFPLVKKVELTEIARRIY--MELCDDFHIFYDDSGTIGKRYRRQDEIGTPYCVTI 400
Query: 199 DSTS----SVTIRERDSKDQMRVHVDDVASIVKA 228
D + +VT+RER++ Q R+ ++D+ S +K
Sbjct: 401 DYNTIEDETVTVRERNNMTQKRIFINDLYSYIKT 434
>sp|Q04Z62|SYG_LEPBL Glycine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=glyQS PE=3 SV=1
Length = 464
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQ 152
+ P V+EP+ G++R+ + + G E V RF P +AP+K VF L++
Sbjct: 326 YVPFVVEPALGVNRLFLAVVTDAYQEEKLPDG-EIRTVLRFSPKIAPVKVAVFPLMKKDG 384
Query: 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRE 208
E ++ I LS G + + D +GA IGKRY R DE+G P ITVD + +VT+RE
Sbjct: 385 LLEKSREIFADLSKLG-NIEYDDSGA-IGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRE 442
Query: 209 RDSKDQMRVHV 219
RDS Q RV V
Sbjct: 443 RDSMAQERVSV 453
>sp|Q04QV5|SYG_LEPBJ Glycine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=glyQS PE=3 SV=1
Length = 464
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQ 152
+ P V+EP+ G++R+ + + G E V RF P +AP+K VF L++
Sbjct: 326 YVPFVVEPALGVNRLFLAVVTDAYQEEKLPDG-EIRTVLRFSPKIAPVKVAVFPLMKKDG 384
Query: 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRE 208
E ++ I LS G + + D +GA IGKRY R DE+G P ITVD + +VT+RE
Sbjct: 385 LLEKSREIFADLSKLG-NIEYDDSGA-IGKRYRRQDEIGTPFCITVDYDTLKDDTVTVRE 442
Query: 209 RDSKDQMRVHV 219
RDS Q RV V
Sbjct: 443 RDSMAQERVSV 453
>sp|Q5JID8|SYG_PYRKO Glycine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=glyS PE=3 SV=1
Length = 570
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 30/238 (12%)
Query: 9 KSGVALVAQEKFSEPREVEKLVIAPVKKELA-------------LEAMNEKEALGMKATL 55
+SG L + EP+ V+KL ++ K + ++ E++ + L
Sbjct: 342 ESGADLTVLIHYDEPKIVKKLEVSLNMKRVGPKLKKDAKRINELIKGWGEEKKRELVELL 401
Query: 56 ESKGEVEFYVRKLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHC 115
E +G+V + ++K+ +I + ++K P V+EPS GIDR Y L E+
Sbjct: 402 EKEGKVTI------EGYELEKDDFIIREVEEKITGEKIVPHVLEPSFGIDRPFYLLLEN- 454
Query: 116 FYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDI 175
S +E R +API+ V LV + + +A I +L G D
Sbjct: 455 -----SLVIEEDRTYLRIKKDMAPIEVAVLPLVAKEPLKSIAYDIFRTLQKEGFIAVYD- 508
Query: 176 TGASIGKRYARTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKAL 229
++G+RY R DE+G P +TVD+ + +VTIR+RD+++Q+RV ++++ ++ L
Sbjct: 509 EKDTVGRRYMRYDEIGTPYCVTVDNQTPEDGTVTIRDRDTREQIRVKIEELPKKLREL 566
>sp|Q97EB8|SYG_CLOAB Glycine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=glyQS
PE=3 SV=1
Length = 462
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQ 152
+ P VIEPS G DR+ + + GD+++ V F P +APIK V L +
Sbjct: 325 YVPYVIEPSLGADRVALAFLIDAYDEEELEGGDQRI-VLHFHPQIAPIKAAVLPLSKKLS 383
Query: 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVTIRE 208
E+ V S+ S I + D TG SIGKRY R DE+G P ITVD + +VTIR+
Sbjct: 384 -EKALDVYSKISSKFNIEY--DETG-SIGKRYRRQDEIGTPYCITVDFDTLEDEAVTIRD 439
Query: 209 RDSKDQMRVHV 219
RDS Q+RV +
Sbjct: 440 RDSMSQVRVKI 450
>sp|Q661P8|SYG_BORGA Glycine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=glyQS PE=3
SV=1
Length = 445
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 67 KLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDR-IIYCLCEHCFYRRPSKAGD 125
K N I + L++KE+ + P VIE S+G+ R ++ LC + + GD
Sbjct: 279 KFSNNPKIFEYHDLLTKER-------YVPHVIETSAGLTRSVLMTLC-NAYSEEELSDGD 330
Query: 126 EQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYA 185
+++ V R P +AP K +F LV+ + E+A+ I + + H +IGKRY
Sbjct: 331 KRI-VLRLHPKLAPYKIAIFPLVKKVELVEIARRIY--IELCDDFHIFYDDSGTIGKRYR 387
Query: 186 RTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKA 228
R DE+G P +TVD ++ +VT+RER++ Q R+ ++D+ S +K
Sbjct: 388 RQDEIGTPYCVTVDYSTIEDETVTVRERNNMTQKRIFINDLYSYIKT 434
>sp|Q0SNE2|SYG_BORAP Glycine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=glyQS PE=3
SV=1
Length = 445
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 67 KLGKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDR-IIYCLCEHCFYRRPSKAGD 125
K N + + L++KE+ + P VIE S+G+ R ++ LC+ + GD
Sbjct: 279 KFSNNSKVFEYHDLLTKER-------YVPYVIETSAGLTRSVLMTLCD-AYSEEELSDGD 330
Query: 126 EQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYA 185
+++ V R P +AP K +F LV+ + EVA+ I + + H +IGKRY
Sbjct: 331 KRI-VLRLHPKLAPYKIAIFPLVKKVELVEVARRIY--VELCDDFHIFYDDSGTIGKRYR 387
Query: 186 RTDELGVPCAITVDSTS----SVTIRERDSKDQMRVHVDDVASIVKA 228
R DE+G P +TVD + +VT+RER++ Q R+ ++D+ S +K
Sbjct: 388 RQDEIGTPYCVTVDYNTIEDETVTVRERNNMTQKRIFINDLYSYIKT 434
>sp|B8I2Z6|SYG_CLOCE Glycine--tRNA ligase OS=Clostridium cellulolyticum (strain ATCC
35319 / DSM 5812 / JCM 6584 / H10) GN=glyQS PE=3 SV=1
Length = 462
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 93 FTPSVIEPSSGIDRI-IYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQ-- 149
+ P IEPS G DR+ + LCE Y A + V RF P +AP+K V L +
Sbjct: 324 YVPYCIEPSLGADRVTLAFLCEA--YDEEEVAEGDVRTVLRFHPALAPVKIAVLPLSKKL 381
Query: 150 NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVT 205
+ ++V +++++S + D TG SIGKRY R DE+G P IT D S SVT
Sbjct: 382 GEDADKVYQMLAKSYYC-----EYDETG-SIGKRYRRQDEIGTPYCITFDFDSLEDKSVT 435
Query: 206 IRERDSKDQMRVHVDDVASIVK 227
IR+RD+ Q+R+ ++D+A+ +
Sbjct: 436 IRDRDTMQQVRIKIEDLAAYFE 457
>sp|Q9L2H9|SYG_STRCO Glycine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=glyQS PE=3 SV=1
Length = 460
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Query: 87 KEFQRVFTPSVIEPSSGIDR--IIYCLCEHCFYRRPSKAGD-EQLNVFRFPPLVAPIKCT 143
+E Q +TP VIEP++G+ R + + L + P+ G E+ V R P ++P+K
Sbjct: 309 QEAQERWTPYVIEPAAGVGRAMLAFLLDAYIEDEAPNAKGKLEKRTVLRLDPRLSPVKVA 368
Query: 144 VFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD---- 199
V L +N + AK ++++L + + D GA IG+RY R DE+G P +TVD
Sbjct: 369 VLPLSRNPELSPKAKGLAQALR-QNWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTL 426
Query: 200 STSSVTIRERDSKDQMRVHVDDVASIVKA 228
++VT+RERD+ Q RV +D + + +
Sbjct: 427 DDNAVTVRERDTMKQERVSLDQIEGYLAS 455
>sp|A3DF15|SYG_CLOTH Glycine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405
/ DSM 1237) GN=glyQS PE=3 SV=1
Length = 462
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 90 QRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQ 149
R + P IEPS G DR+ + + GD ++ V RF P +AP+K V L
Sbjct: 321 NRKYIPYCIEPSLGADRVALVFLCDAYDEEEVEEGDIRV-VLRFHPAIAPVKIAVLPL-- 377
Query: 150 NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS----SVT 205
+++ + A I E L + + + D TG SIGKRY R DE+G P +T D S VT
Sbjct: 378 SKKLGDEAYKIYEML-IKKYNCEYDETG-SIGKRYRRQDEIGTPYCVTFDFDSLNDRCVT 435
Query: 206 IRERDSKDQMRVHVDDVASIVKALTD 231
+R+RDS Q+R+ +D++ S + D
Sbjct: 436 VRDRDSMQQVRIKIDELLSYFEGKFD 461
>sp|Q899G6|SYG_CLOTE Glycine--tRNA ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=glyQS PE=3 SV=1
Length = 463
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQ 152
+ P IEPS G DR+ + GD + V R P +AP K + L + +
Sbjct: 325 YLPYCIEPSLGADRVALAFLVDAYDEEELDGGDSR-TVLRLHPALAPFKAAILPLTKKLK 383
Query: 153 YE--EVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVTI 206
+ EV ++S+ +V D G +IGKRY R DE+G P IT+D ++VTI
Sbjct: 384 DKSLEVYSMLSKYFNV-----DYDEAG-TIGKRYRREDEIGTPYCITIDYDTLEDNTVTI 437
Query: 207 RERDSKDQMRVHVDDVASIV 226
R+RDS DQ+R+++D++ +
Sbjct: 438 RDRDSMDQIRINIDELVKYI 457
>sp|Q82BR9|SYG_STRAW Glycine--tRNA ligase OS=Streptomyces avermitilis (strain ATCC 31267
/ DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=glyQS PE=3 SV=1
Length = 460
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 93 FTPSVIEPSSGIDR--IIYCLCEHCFYRRPSKAGD-EQLNVFRFPPLVAPIKCTVFTLVQ 149
+TP VIEP++G+ R + + L + P+ G E+ V R P ++P+K V L +
Sbjct: 315 WTPYVIEPAAGVGRAMLAFLLDAYVEDEAPNAKGKMEKRTVLRLDPRLSPVKVAVLPLSR 374
Query: 150 NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVT 205
N + AK ++ +L + + D GA IG+RY R DE+G P +TVD ++VT
Sbjct: 375 NPELSPKAKGLATALR-QHWNIEFDDAGA-IGRRYRRQDEIGTPFCVTVDFDTLDDNAVT 432
Query: 206 IRERDSKDQMRVHVDDVASIVKA 228
+RERDS Q RV +D + + A
Sbjct: 433 VRERDSMKQERVSLDQIEGYLAA 455
>sp|Q47RL8|SYG_THEFY Glycine--tRNA ligase OS=Thermobifida fusca (strain YX) GN=glyQS
PE=3 SV=1
Length = 462
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 93 FTPSVIEPSSGIDR--IIYCLCEHCFYRRPSKAGD-EQLNVFRFPPLVAPIKCTVFTLVQ 149
F P VIEPS+G+DR + + L + P+ G E+ V R P +AP+K V L +
Sbjct: 317 FIPYVIEPSAGVDRTMLTFLLDAYTEDEAPNAKGKMEKRVVMRLDPRLAPVKAAVLPLSR 376
Query: 150 NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD----STSSVT 205
N A+ ++ L + + D GA IG+RY R DE+G P +T+D ++VT
Sbjct: 377 NADLSPKARDLAAKLR-KRWNVEFDDAGA-IGRRYRRQDEIGTPFCVTIDFDTLEDNAVT 434
Query: 206 IRERDSKDQMRVHVDDV 222
+RERDS Q R+ +D V
Sbjct: 435 VRERDSMAQERISIDQV 451
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,092,578
Number of Sequences: 539616
Number of extensions: 4384285
Number of successful extensions: 13286
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 12875
Number of HSP's gapped (non-prelim): 377
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)