Query 042110
Match_columns 287
No_of_seqs 301 out of 1721
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02734 glycyl-tRNA synthetas 100.0 5E-56 1.1E-60 450.6 27.1 248 2-252 423-683 (684)
2 KOG2298 Glycyl-tRNA synthetase 100.0 2.6E-51 5.7E-56 396.2 19.0 226 2-237 357-599 (599)
3 COG0423 GRS1 Glycyl-tRNA synth 100.0 3.8E-50 8.3E-55 393.8 18.3 214 2-236 330-557 (558)
4 TIGR00389 glyS_dimeric glycyl- 100.0 2E-43 4.3E-48 353.3 23.4 213 2-229 324-550 (551)
5 PRK14894 glycyl-tRNA synthetas 100.0 4.4E-33 9.4E-38 274.5 16.1 173 58-231 257-538 (539)
6 PRK04173 glycyl-tRNA synthetas 99.9 2.5E-26 5.4E-31 227.0 19.9 167 60-229 281-455 (456)
7 PRK03991 threonyl-tRNA synthet 99.9 1.3E-25 2.9E-30 228.6 20.3 167 60-234 417-596 (613)
8 cd00858 GlyRS_anticodon GlyRS 99.9 5E-23 1.1E-27 168.9 14.4 116 111-230 1-120 (121)
9 TIGR00408 proS_fam_I prolyl-tR 99.9 3.6E-22 7.8E-27 198.2 19.3 151 69-231 216-382 (472)
10 PLN02837 threonine-tRNA ligase 99.9 4.1E-22 8.9E-27 203.4 19.8 158 60-234 442-612 (614)
11 TIGR00409 proS_fam_II prolyl-t 99.9 1.6E-22 3.6E-27 204.6 16.7 133 86-228 430-567 (568)
12 PRK14799 thrS threonyl-tRNA sy 99.9 2E-22 4.3E-27 203.0 17.0 159 60-234 364-535 (545)
13 PRK12305 thrS threonyl-tRNA sy 99.9 4.3E-22 9.4E-27 201.1 19.0 158 60-233 402-572 (575)
14 PRK09194 prolyl-tRNA synthetas 99.9 3.1E-22 6.8E-27 202.3 17.8 132 86-227 425-561 (565)
15 PRK12444 threonyl-tRNA synthet 99.9 4.3E-22 9.3E-27 203.7 18.8 159 60-233 467-638 (639)
16 TIGR00418 thrS threonyl-tRNA s 99.9 5.3E-22 1.2E-26 199.9 18.7 153 60-228 396-561 (563)
17 cd02426 Pol_gamma_b_Cterm C-te 99.9 5.3E-22 1.1E-26 165.5 14.7 104 128-231 16-127 (128)
18 PRK12325 prolyl-tRNA synthetas 99.9 2.5E-21 5.4E-26 190.5 17.2 132 86-227 302-438 (439)
19 PRK08661 prolyl-tRNA synthetas 99.9 6.9E-21 1.5E-25 189.2 19.5 152 68-231 220-388 (477)
20 PRK00413 thrS threonyl-tRNA sy 99.9 4.7E-21 1E-25 195.5 18.5 158 60-233 465-635 (638)
21 PLN02908 threonyl-tRNA synthet 99.9 2.2E-20 4.8E-25 192.8 19.1 157 60-232 514-684 (686)
22 COG0441 ThrS Threonyl-tRNA syn 99.8 6.7E-20 1.5E-24 185.3 16.5 159 60-234 413-584 (589)
23 PRK14938 Ser-tRNA(Thr) hydrola 99.8 5.4E-20 1.2E-24 177.0 14.8 114 103-228 248-365 (387)
24 cd00862 ProRS_anticodon_zinc P 99.8 9.3E-20 2E-24 162.5 13.9 102 130-231 1-111 (202)
25 PF03129 HGTP_anticodon: Antic 99.8 1.5E-18 3.3E-23 135.0 10.9 89 141-229 1-94 (94)
26 cd00861 ProRS_anticodon_short 99.7 2.6E-17 5.7E-22 127.5 11.3 88 139-226 1-93 (94)
27 COG0124 HisS Histidyl-tRNA syn 99.7 6E-17 1.3E-21 159.0 13.9 122 89-229 302-427 (429)
28 cd00860 ThrRS_anticodon ThrRS 99.7 4.2E-16 9.2E-21 119.4 12.1 86 139-226 1-90 (91)
29 CHL00201 syh histidine-tRNA sy 99.6 3E-15 6.5E-20 147.1 15.0 122 89-231 294-419 (430)
30 cd00738 HGTP_anticodon HGTP an 99.6 5.7E-15 1.2E-19 113.6 11.9 88 139-226 1-93 (94)
31 PRK00037 hisS histidyl-tRNA sy 99.6 1.3E-14 2.8E-19 140.8 15.8 115 92-230 293-411 (412)
32 KOG1637 Threonyl-tRNA syntheta 99.6 1.1E-14 2.3E-19 142.3 13.2 156 60-231 385-556 (560)
33 PLN02530 histidine-tRNA ligase 99.6 4.3E-14 9.3E-19 141.0 13.8 113 91-222 370-486 (487)
34 PLN02972 Histidyl-tRNA synthet 99.4 2.2E-12 4.7E-17 134.0 16.1 123 92-231 635-761 (763)
35 cd00859 HisRS_anticodon HisRS 99.4 5.3E-12 1.2E-16 95.1 11.7 84 141-226 3-90 (91)
36 PRK12420 histidyl-tRNA synthet 99.4 9.1E-12 2E-16 122.0 13.8 106 93-222 312-422 (423)
37 TIGR00442 hisS histidyl-tRNA s 99.3 9E-12 1.9E-16 120.5 13.0 101 93-212 293-397 (397)
38 KOG4163 Prolyl-tRNA synthetase 99.3 4.5E-12 9.9E-17 123.2 5.8 132 90-231 304-449 (551)
39 KOG2324 Prolyl-tRNA synthetase 99.1 7.9E-10 1.7E-14 105.9 12.4 116 101-227 300-427 (457)
40 COG0442 ProS Prolyl-tRNA synth 99.0 8.4E-10 1.8E-14 110.5 8.6 148 69-226 345-498 (500)
41 KOG1936 Histidyl-tRNA syntheta 99.0 2.9E-09 6.2E-14 104.0 11.8 123 93-231 389-516 (518)
42 COG0442 ProS Prolyl-tRNA synth 98.2 1.2E-06 2.5E-11 88.2 4.9 138 96-243 251-407 (500)
43 cd00771 ThrRS_core Threonyl-tR 97.9 1.4E-05 3.1E-10 75.2 6.0 66 60-139 224-298 (298)
44 PF12745 HGTP_anticodon2: Anti 97.8 0.00028 6.1E-09 66.2 11.2 95 139-234 5-110 (273)
45 PRK12292 hisZ ATP phosphoribos 97.5 0.00054 1.2E-08 66.9 9.9 87 93-208 303-389 (391)
46 PRK12421 ATP phosphoribosyltra 94.1 0.2 4.3E-06 49.2 8.0 73 94-200 311-383 (392)
47 cd00770 SerRS_core Seryl-tRNA 92.0 0.22 4.7E-06 47.0 4.6 24 91-114 256-279 (297)
48 TIGR00414 serS seryl-tRNA synt 91.3 0.25 5.5E-06 49.0 4.4 40 92-140 378-417 (418)
49 cd00670 Gly_His_Pro_Ser_Thr_tR 90.1 0.43 9.3E-06 42.4 4.4 27 86-112 209-235 (235)
50 PRK05431 seryl-tRNA synthetase 88.0 0.71 1.5E-05 46.0 4.7 44 89-141 372-416 (425)
51 COG0011 Uncharacterized conser 72.9 15 0.00032 29.8 6.4 81 140-228 5-97 (100)
52 TIGR00106 uncharacterized prot 72.6 47 0.001 26.4 10.2 67 140-211 3-81 (97)
53 PLN03194 putative disease resi 71.3 16 0.00035 32.7 6.9 59 138-198 25-87 (187)
54 PRK03708 ppnK inorganic polyph 71.0 7.2 0.00016 36.7 4.9 97 141-237 2-117 (277)
55 PRK03372 ppnK inorganic polyph 69.1 12 0.00025 35.9 5.9 97 141-237 7-133 (306)
56 TIGR00147 lipid kinase, YegS/R 68.2 22 0.00047 32.8 7.5 52 153-204 17-70 (293)
57 TIGR03137 AhpC peroxiredoxin. 67.9 24 0.00052 30.7 7.3 60 167-228 92-154 (187)
58 PRK04539 ppnK inorganic polyph 67.6 14 0.00031 35.0 6.2 97 141-237 7-129 (296)
59 PRK10382 alkyl hydroperoxide r 67.0 20 0.00043 31.6 6.6 61 167-229 92-155 (187)
60 PRK01231 ppnK inorganic polyph 64.9 12 0.00027 35.4 5.2 97 141-237 6-123 (295)
61 PRK03975 tfx putative transcri 64.5 33 0.00072 29.3 7.2 70 137-211 63-139 (141)
62 PRK01911 ppnK inorganic polyph 64.0 15 0.00032 34.9 5.5 96 142-237 3-125 (292)
63 cd00774 GlyRS-like_core Glycyl 63.1 3.2 7E-05 38.2 0.8 22 91-112 233-254 (254)
64 PRK11914 diacylglycerol kinase 62.0 22 0.00049 33.1 6.3 64 140-203 9-76 (306)
65 PRK13190 putative peroxiredoxi 61.8 25 0.00055 31.1 6.3 61 169-231 92-155 (202)
66 PF08357 SEFIR: SEFIR domain; 61.4 15 0.00034 30.3 4.6 36 141-176 2-38 (150)
67 TIGR00559 pdxJ pyridoxine 5'-p 60.7 27 0.00058 32.5 6.4 60 136-197 81-150 (237)
68 PRK13191 putative peroxiredoxi 60.3 35 0.00076 30.7 7.0 60 168-229 97-160 (215)
69 cd00003 PNPsynthase Pyridoxine 60.2 28 0.00061 32.3 6.4 60 136-197 81-150 (234)
70 PRK03378 ppnK inorganic polyph 60.1 18 0.00038 34.4 5.3 95 141-235 7-122 (292)
71 PF14601 TFX_C: DNA_binding pr 59.8 20 0.00043 28.1 4.6 65 138-207 13-84 (84)
72 PTZ00137 2-Cys peroxiredoxin; 59.7 32 0.00069 32.2 6.8 60 168-229 163-224 (261)
73 PRK14076 pnk inorganic polypho 59.7 15 0.00032 38.0 5.1 100 138-237 289-409 (569)
74 PF03740 PdxJ: Pyridoxal phosp 58.6 33 0.00073 31.9 6.6 56 138-195 84-149 (239)
75 PF01520 Amidase_3: N-acetylmu 57.8 39 0.00086 28.4 6.6 49 152-200 25-76 (175)
76 PRK02645 ppnK inorganic polyph 57.5 25 0.00054 33.5 5.8 64 141-204 5-70 (305)
77 PRK02155 ppnK NAD(+)/NADH kina 57.5 21 0.00045 33.8 5.3 97 141-237 7-124 (291)
78 PRK13055 putative lipid kinase 57.4 40 0.00086 32.2 7.2 52 153-204 18-72 (334)
79 PRK05265 pyridoxine 5'-phospha 55.8 36 0.00078 31.7 6.3 60 136-197 84-153 (239)
80 cd03016 PRX_1cys Peroxiredoxin 55.5 40 0.00086 29.8 6.5 88 140-229 60-153 (203)
81 cd03015 PRX_Typ2cys Peroxiredo 55.3 67 0.0015 27.2 7.7 61 167-229 93-156 (173)
82 PRK00522 tpx lipid hydroperoxi 55.1 47 0.001 28.3 6.7 59 169-227 102-166 (167)
83 PRK13337 putative lipid kinase 53.7 58 0.0012 30.4 7.6 51 154-204 18-70 (304)
84 PF01910 DUF77: Domain of unkn 53.4 36 0.00079 26.7 5.2 68 141-213 2-81 (92)
85 PRK13599 putative peroxiredoxi 53.2 55 0.0012 29.4 7.1 60 168-229 92-155 (215)
86 cd03014 PRX_Atyp2cys Peroxired 52.6 47 0.001 26.8 6.1 66 158-223 73-141 (143)
87 PRK13059 putative lipid kinase 52.3 69 0.0015 29.9 7.9 50 154-204 18-69 (295)
88 PRK14077 pnk inorganic polypho 52.1 27 0.00058 33.1 5.1 94 141-235 12-123 (287)
89 PRK02649 ppnK inorganic polyph 51.8 28 0.0006 33.3 5.1 96 141-237 3-129 (305)
90 cd02969 PRX_like1 Peroxiredoxi 50.6 1E+02 0.0022 25.9 8.0 63 168-234 90-156 (171)
91 PRK01185 ppnK inorganic polyph 50.3 22 0.00048 33.4 4.1 96 142-238 3-111 (271)
92 PLN02935 Bifunctional NADH kin 50.1 37 0.0008 34.9 5.9 100 138-237 193-323 (508)
93 PRK14075 pnk inorganic polypho 48.9 35 0.00077 31.6 5.3 79 151-237 9-99 (256)
94 PRK13189 peroxiredoxin; Provis 48.5 82 0.0018 28.4 7.5 59 169-229 100-162 (222)
95 TIGR00388 glyQ glycyl-tRNA syn 47.3 19 0.00041 34.2 3.1 43 71-113 126-170 (293)
96 cd02696 MurNAc-LAA N-acetylmur 47.1 86 0.0019 26.4 7.0 50 151-200 25-77 (172)
97 PRK03501 ppnK inorganic polyph 47.0 35 0.00077 31.9 5.0 82 141-237 4-102 (264)
98 PRK15000 peroxidase; Provision 46.7 85 0.0018 27.8 7.2 59 169-229 100-161 (200)
99 PF04052 TolB_N: TolB amino-te 46.3 43 0.00093 26.1 4.7 62 138-199 11-82 (105)
100 PF08534 Redoxin: Redoxin; In 46.2 90 0.002 25.2 6.8 68 140-213 63-136 (146)
101 cd03008 TryX_like_RdCVF Trypar 45.1 32 0.00069 29.3 4.0 46 160-208 80-129 (146)
102 TIGR03702 lip_kinase_YegS lipi 44.9 84 0.0018 29.2 7.1 49 155-203 14-64 (293)
103 cd02549 Peptidase_C39A A sub-f 42.8 1.3E+02 0.0029 23.8 7.3 66 157-226 46-130 (141)
104 PRK13054 lipid kinase; Reviewe 40.7 1.3E+02 0.0028 28.0 7.8 51 154-204 17-69 (300)
105 TIGR00640 acid_CoA_mut_C methy 40.4 2.1E+02 0.0046 23.7 8.2 60 139-199 2-61 (132)
106 cd02259 Peptidase_C39_like Pep 38.1 1.5E+02 0.0033 22.6 6.8 61 158-224 42-112 (122)
107 PRK09348 glyQ glycyl-tRNA synt 37.4 23 0.00049 33.5 2.0 44 70-113 128-173 (283)
108 cd00733 GlyRS_alpha_core Class 37.0 24 0.00052 33.2 2.1 43 71-113 125-169 (279)
109 COG0854 PdxJ Pyridoxal phospha 36.1 1.1E+02 0.0023 28.5 6.1 61 136-198 82-152 (243)
110 PRK09004 FMN-binding protein M 35.6 1.9E+02 0.0041 24.2 7.3 35 141-175 3-37 (146)
111 PF02780 Transketolase_C: Tran 35.4 87 0.0019 25.0 5.0 32 140-174 10-41 (124)
112 cd02991 UAS_ETEA UAS family, E 35.1 2.1E+02 0.0046 23.1 7.2 70 159-232 44-115 (116)
113 TIGR01486 HAD-SF-IIB-MPGP mann 34.4 2.9E+02 0.0063 24.7 8.8 50 156-207 20-69 (256)
114 PRK04885 ppnK inorganic polyph 33.8 79 0.0017 29.6 5.1 80 141-237 2-98 (265)
115 cd00778 ProRS_core_arch_euk Pr 33.7 68 0.0015 29.5 4.6 44 68-113 209-260 (261)
116 COG0061 nadF NAD kinase [Coenz 33.3 64 0.0014 30.2 4.4 91 142-232 3-111 (281)
117 PF08260 Kinin: Insect kinin p 33.2 14 0.0003 16.7 -0.0 6 264-269 3-8 (8)
118 COG2179 Predicted hydrolase of 33.0 1.1E+02 0.0023 27.3 5.4 23 152-174 46-68 (175)
119 cd00779 ProRS_core_prok Prolyl 32.7 34 0.00074 31.4 2.4 29 86-114 227-255 (255)
120 PRK07080 hypothetical protein; 32.3 30 0.00066 33.4 2.1 14 101-114 285-298 (317)
121 PLN02958 diacylglycerol kinase 32.0 1.7E+02 0.0037 29.7 7.4 66 139-204 111-181 (481)
122 PRK07308 flavodoxin; Validated 31.8 1.5E+02 0.0032 24.3 6.0 36 141-176 3-38 (146)
123 PF00781 DAGK_cat: Diacylglyce 31.6 1.1E+02 0.0024 24.6 5.1 47 157-203 17-66 (130)
124 PF01513 NAD_kinase: ATP-NAD k 30.6 21 0.00046 33.2 0.7 96 142-237 2-137 (285)
125 PF00578 AhpC-TSA: AhpC/TSA fa 30.5 96 0.0021 23.9 4.4 39 167-206 82-123 (124)
126 PRK15126 thiamin pyrimidine py 30.4 2.2E+02 0.0048 25.6 7.4 71 153-226 20-92 (272)
127 cd02418 Peptidase_C39B A sub-f 30.0 2.7E+02 0.0059 21.8 7.5 63 157-224 46-122 (136)
128 TIGR02883 spore_cwlD N-acetylm 29.3 2.2E+02 0.0047 24.8 6.9 52 149-200 24-92 (189)
129 PRK08392 hypothetical protein; 29.3 1.3E+02 0.0028 26.7 5.5 45 154-200 136-181 (215)
130 PRK13057 putative lipid kinase 28.6 1.1E+02 0.0023 28.3 5.1 47 156-203 14-62 (287)
131 TIGR00721 tfx DNA-binding prot 28.5 1.8E+02 0.0039 24.7 5.9 66 137-207 63-135 (137)
132 PF08141 SspH: Small acid-solu 28.2 69 0.0015 23.4 2.9 23 201-223 34-57 (58)
133 KOG1035 eIF-2alpha kinase GCN2 28.0 1.6E+02 0.0036 33.7 6.9 88 138-228 1258-1348(1351)
134 PF02091 tRNA-synt_2e: Glycyl- 27.8 99 0.0022 29.4 4.6 42 71-112 124-167 (284)
135 cd02950 TxlA TRX-like protein 27.8 3.5E+02 0.0076 22.3 8.7 76 153-233 38-113 (142)
136 smart00255 TIR Toll - interleu 27.7 3.1E+02 0.0067 21.7 7.3 61 140-200 2-64 (140)
137 PRK10976 putative hydrolase; P 27.7 2.4E+02 0.0052 25.2 7.1 52 153-206 20-71 (266)
138 PLN02727 NAD kinase 27.6 1.1E+02 0.0023 34.0 5.4 95 139-234 678-801 (986)
139 TIGR02861 SASP_H small acid-so 27.5 71 0.0015 23.3 2.9 26 198-223 30-57 (58)
140 cd01026 TOPRIM_OLD TOPRIM_OLD: 27.2 1.4E+02 0.003 22.9 4.8 36 164-200 29-64 (97)
141 PF01008 IF-2B: Initiation fac 27.1 1.7E+02 0.0038 26.8 6.1 41 157-204 147-193 (282)
142 cd06260 DUF820 Domain of unkno 26.9 2.8E+02 0.006 22.3 6.8 42 169-210 84-129 (155)
143 COG1597 LCB5 Sphingosine kinas 26.9 2.2E+02 0.0048 26.9 6.9 63 143-205 8-72 (301)
144 PRK03669 mannosyl-3-phosphogly 26.8 3.2E+02 0.007 24.7 7.8 52 155-207 27-78 (271)
145 PRK05588 histidinol-phosphatas 26.8 2E+02 0.0043 26.1 6.4 47 153-200 164-217 (255)
146 PRK01158 phosphoglycolate phos 26.8 4.2E+02 0.009 22.9 9.2 52 155-208 23-74 (230)
147 PRK12361 hypothetical protein; 26.6 2.3E+02 0.0049 28.9 7.4 57 146-203 251-309 (547)
148 PF03412 Peptidase_C39: Peptid 26.3 1.6E+02 0.0034 23.2 5.1 59 159-224 49-117 (131)
149 PF00152 tRNA-synt_2: tRNA syn 26.2 63 0.0014 30.7 3.1 20 94-114 302-321 (335)
150 PRK08105 flavodoxin; Provision 25.9 1.5E+02 0.0034 24.8 5.1 35 141-175 3-37 (149)
151 cd02958 UAS UAS family; UAS is 25.6 3.2E+02 0.007 21.2 7.9 68 158-231 43-112 (114)
152 PF03646 FlaG: FlaG protein; 25.2 1.5E+02 0.0033 23.3 4.7 39 191-229 54-96 (107)
153 PF03698 UPF0180: Uncharacteri 25.2 3.3E+02 0.0071 21.1 6.4 64 158-230 11-79 (80)
154 TIGR02661 MauD methylamine deh 25.0 1.1E+02 0.0024 26.5 4.2 45 160-207 118-162 (189)
155 PF13905 Thioredoxin_8: Thiore 25.0 2.8E+02 0.006 20.4 6.0 58 140-204 36-95 (95)
156 cd02971 PRX_family Peroxiredox 25.0 2.1E+02 0.0045 22.5 5.6 69 140-213 57-131 (140)
157 CHL00144 odpB pyruvate dehydro 24.6 2.2E+02 0.0047 27.3 6.5 57 141-200 203-261 (327)
158 TIGR00415 serS_MJ seryl-tRNA s 24.4 52 0.0011 34.0 2.2 17 101-117 475-492 (520)
159 PF03853 YjeF_N: YjeF-related 24.0 3E+02 0.0065 23.5 6.7 58 138-197 24-87 (169)
160 PRK03174 sspH acid-soluble spo 24.0 1.1E+02 0.0025 22.4 3.4 27 198-224 30-58 (59)
161 PLN02204 diacylglycerol kinase 23.7 3E+02 0.0064 29.1 7.6 63 141-203 163-230 (601)
162 COG2185 Sbm Methylmalonyl-CoA 23.7 3.4E+02 0.0074 23.3 6.8 58 138-196 11-68 (143)
163 PRK00861 putative lipid kinase 23.6 2.7E+02 0.0059 25.7 6.8 45 157-202 22-68 (300)
164 CHL00200 trpA tryptophan synth 23.3 6.1E+02 0.013 23.6 10.0 68 155-229 131-200 (263)
165 cd00768 class_II_aaRS-like_cor 22.9 27 0.00059 29.7 -0.1 19 89-107 193-211 (211)
166 PRK01625 sspH acid-soluble spo 22.8 1.2E+02 0.0025 22.4 3.2 27 198-224 30-58 (59)
167 PLN02903 aminoacyl-tRNA ligase 22.7 67 0.0014 34.1 2.7 60 94-173 590-649 (652)
168 cd02425 Peptidase_C39F A sub-f 22.6 3.6E+02 0.0079 20.7 7.2 62 157-224 46-117 (126)
169 PRK15412 thiol:disulfide inter 22.6 4.9E+02 0.011 22.2 8.1 62 162-231 114-177 (185)
170 PRK10513 sugar phosphate phosp 21.8 3.4E+02 0.0073 24.3 6.9 53 153-206 21-75 (270)
171 cd04813 PA_1 PA_1: Protease-as 21.8 3.7E+02 0.0081 21.8 6.5 34 167-200 39-72 (117)
172 TIGR00385 dsbE periplasmic pro 21.8 3.6E+02 0.0078 22.7 6.7 59 163-230 110-171 (173)
173 PTZ00195 60S ribosomal protein 21.6 2.3E+02 0.005 25.7 5.5 104 176-284 60-175 (198)
174 PRK14894 glycyl-tRNA synthetas 21.4 59 0.0013 33.7 1.9 30 2-31 272-302 (539)
175 PRK05425 asparagine synthetase 21.2 72 0.0016 31.0 2.4 21 94-114 280-300 (327)
176 KOG3029 Glutathione S-transfer 21.1 3.5E+02 0.0075 26.3 6.8 103 139-259 88-192 (370)
177 PF11460 DUF3007: Protein of u 20.7 76 0.0016 25.9 2.1 19 39-57 86-104 (104)
178 COG3589 Uncharacterized conser 20.6 1.7E+02 0.0037 28.8 4.8 125 153-282 47-206 (360)
179 cd03012 TlpA_like_DipZ_like Tl 20.3 3E+02 0.0066 21.6 5.7 46 159-208 75-122 (126)
180 PF13778 DUF4174: Domain of un 20.2 4.7E+02 0.01 21.1 7.3 61 163-228 38-110 (118)
181 cd02417 Peptidase_C39_likeA A 20.1 4.1E+02 0.0088 20.4 7.1 61 158-224 42-112 (121)
182 PRK05568 flavodoxin; Provision 20.1 3.3E+02 0.0071 21.9 5.9 36 141-176 3-38 (142)
No 1
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=5e-56 Score=450.63 Aligned_cols=248 Identities=75% Similarity=1.040 Sum_probs=237.7
Q ss_pred cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh-------------hhhccCHHHHHhHHHhhccCCeEEEEEeeC
Q 042110 2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGMKATLESKGEVEFYVRKL 68 (287)
Q Consensus 2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~-------------~l~~l~~~~~~~~~~~l~~~~~~~~~v~~~ 68 (287)
.|++||++||++|+++++|++|++++++++.|||+.| +|++|+++++++++++|+++|++.+.++..
T Consensus 423 DL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 502 (684)
T PLN02734 423 DLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTL 502 (684)
T ss_pred chHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhcCceeeeeccc
Confidence 4899999999999999999999999999999999999 999999999999999999999999988544
Q ss_pred CeeEEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec
Q 042110 69 GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV 148 (287)
Q Consensus 69 g~~~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~ 148 (287)
|++|+|+++|++|+..+++++|++++||||||||||+||+||++||+|+.| ++|++|.+|+||+|+||+||+|+|+.
T Consensus 503 ~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~---~~De~R~~L~~Pp~IAP~qVaIlPL~ 579 (684)
T PLN02734 503 GKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTR---PGDEQLNVFRFPPLVAPIKCTVFPLV 579 (684)
T ss_pred CcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccc---cCCCcceEEecCcccCCcEEEEEEec
Confidence 899999999999999999999999999999999999999999999999876 57788999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 149 QNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
.++++.++|.+|++.||++|++|.+|+++.++|+||++||++|+||+||||++|+||||+|++++|.+++++++++.|.+
T Consensus 580 ~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~dgtVTIRdRdsgeQ~rV~ldeLv~~I~~ 659 (684)
T PLN02734 580 QNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDSDGSVTIRERDSKDQVRVPVEEVASVVKD 659 (684)
T ss_pred CChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECCCCeEEEEECCCCceEEeeHHHHHHHHHH
Confidence 77678899999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHhccCCCCCCCCcc
Q 042110 229 LTDGQRTWEDVWANSPFPIPNPPN 252 (287)
Q Consensus 229 l~~~~~~w~~~~~~~p~~~~~~~~ 252 (287)
++++..+|+++.++||.|++|++.
T Consensus 660 li~~~~~w~~~~~~~~~~~~~~~~ 683 (684)
T PLN02734 660 LTDGRMTWEDVTAKYPAHSSAADD 683 (684)
T ss_pred HHcCCCCHHHHHhhCccccccccC
Confidence 999999999999999999997653
No 2
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-51 Score=396.24 Aligned_cols=226 Identities=44% Similarity=0.641 Sum_probs=220.5
Q ss_pred cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh-------------hhhccCHHHHHhHHHhhccCCeEEEEEeeC
Q 042110 2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGMKATLESKGEVEFYVRKL 68 (287)
Q Consensus 2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~-------------~l~~l~~~~~~~~~~~l~~~~~~~~~v~~~ 68 (287)
.|++||++||++|+|.++|+||++|+++++.|||+.+ +|..++++++.+....|.++|.+.+.+
T Consensus 357 DL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~~~v--- 433 (599)
T KOG2298|consen 357 DLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLLHMYV--- 433 (599)
T ss_pred eeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcEEEEE---
Confidence 5899999999999999999999999999999999999 899999999999999999999999877
Q ss_pred CeeEEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec
Q 042110 69 GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV 148 (287)
Q Consensus 69 g~~~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~ 148 (287)
|++++.++++++.+++++.+.++|.||||||||+||+|+|+||+|+ | ++|++|++|+|||.+||++|+|+|++
T Consensus 434 ---~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfGiGRI~Y~l~EHsF~-R---~~de~R~~~sfpp~vAPiK~~v~pls 506 (599)
T KOG2298|consen 434 ---VNLSKLHVRIKRKTKVPHVREVNPDVIEPSFGIGRISYQLTEHSFT-R---KGDEQRKVLSFPPLVAPIKVALDPLS 506 (599)
T ss_pred ---EecccceeeeeeeeeeeeEEeecCCcccccchhhHHHHHHHhhhhc-c---CcccccceeccCccccceEEEEEecc
Confidence 8899999999999999999999999999999999999999999999 6 78999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHH
Q 042110 149 QNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVAS 224 (287)
Q Consensus 149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~ 224 (287)
+++++.+++..|.+.|+++||++.+|+++.|||+||++.|++|+||.||||+ +++||||+|||+.|+++.++++++
T Consensus 507 ~n~ef~pv~~~ls~~L~~~gis~kvdds~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s 586 (599)
T KOG2298|consen 507 PNLEFRPVCQGLSNELTENGISVKVDDSSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKS 586 (599)
T ss_pred CchhHHHHHHHHHHHHHhCCCeEEecCCCCcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHhcCCCChH
Q 042110 225 IVKALTDGQRTWE 237 (287)
Q Consensus 225 ~l~~l~~~~~~w~ 237 (287)
.|.+++.|..+|+
T Consensus 587 ~v~~~~~g~~~w~ 599 (599)
T KOG2298|consen 587 FLIKYISGAKNWE 599 (599)
T ss_pred HHHHHhcccccCC
Confidence 9999999999995
No 3
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-50 Score=393.75 Aligned_cols=214 Identities=39% Similarity=0.588 Sum_probs=193.0
Q ss_pred cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh--h--------hhccCHHHHHhHHHhhccCCeEEEEEeeCCee
Q 042110 2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL--A--------LEAMNEKEALGMKATLESKGEVEFYVRKLGKN 71 (287)
Q Consensus 2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~--~--------l~~l~~~~~~~~~~~l~~~~~~~~~v~~~g~~ 71 (287)
.|++||++||++|+++++|+||++|+++.+.+|++.+ . .++|+ ++++++..+ +|
T Consensus 330 DL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~s--e~~~~~~~~------------~~-- 393 (558)
T COG0423 330 DLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALS--ELEELEKEL------------NG-- 393 (558)
T ss_pred chhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhh--hhhhhhhcc------------Cc--
Confidence 4899999999999999999999999999999999998 1 22333 333333322 23
Q ss_pred EEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCCh
Q 042110 72 VCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ 151 (287)
Q Consensus 72 ~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~ 151 (287)
|+|+++++.|+.++ +++|++++||||||||||||++|++|+|+|+.+ ++++.|.+|+|||++||++|+|+||.+++
T Consensus 394 ~~~~~~~~~i~~~~-~~~~e~~iP~VIEPSfGidRi~y~~l~~ay~~e---e~~e~R~vLrl~p~lAPikvaVlPL~~k~ 469 (558)
T COG0423 394 YEVSKDLVIIEEVE-KVTGEKYIPHVIEPSFGIDRIFYALLEHAYTEE---EVEEKRIVLRLPPDLAPIKVAVLPLVKKD 469 (558)
T ss_pred cccccchhheeeee-eccCceecCceeccCCCchHHHHHHHHHhhccc---ccccceeEEecCcccCceEEEEEeeeccc
Confidence 99999999999999 999999999999999999999999999999975 45567999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 152 QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
++.+.|.+|.+.|++.|+.|.+|+++ ||||||+|+|++|+|||||||+ |+|||||+|||++|+|+++++|+++|.
T Consensus 470 ~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~ 548 (558)
T COG0423 470 ELVEIAKEIFEKLRELGFNVDYDDSG-SIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLR 548 (558)
T ss_pred chhHHHHHHHHHHHhcCceEEecCCC-cHhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHH
Confidence 89999999999999999999999965 9999999999999999999999 999999999999999999999999999
Q ss_pred HHhcCCCCh
Q 042110 228 ALTDGQRTW 236 (287)
Q Consensus 228 ~l~~~~~~w 236 (287)
.++.+...|
T Consensus 549 ~~~~~~~~~ 557 (558)
T COG0423 549 ELIKGGFEW 557 (558)
T ss_pred HHhcccccc
Confidence 998876544
No 4
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=2e-43 Score=353.34 Aligned_cols=213 Identities=39% Similarity=0.601 Sum_probs=196.3
Q ss_pred cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh----------hhhccCHHHHHhHHHhhccCCeEEEEEeeCCee
Q 042110 2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL----------ALEAMNEKEALGMKATLESKGEVEFYVRKLGKN 71 (287)
Q Consensus 2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~----------~l~~l~~~~~~~~~~~l~~~~~~~~~v~~~g~~ 71 (287)
.|++||++||++|+++++++||+.+++++|+|||++| .+++|+++++++++++|+++ +
T Consensus 324 DL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 391 (551)
T TIGR00389 324 DLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKN------------E 391 (551)
T ss_pred ChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhcc------------c
Confidence 4899999999999999999999999999999999999 55689999999999999753 7
Q ss_pred EEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCCh
Q 042110 72 VCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ 151 (287)
Q Consensus 72 ~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~ 151 (287)
|+|+++||+|+..+++++|++++|+|||||||+||++++|++|+++.++ +++++|.+|+||+++||++|+|+|+++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~P~VIepS~GIdRIi~ALle~~~~e~~--~~~~~r~vL~lp~~lAP~kV~VIpl~~~~ 469 (551)
T TIGR00389 392 VELDKDLVEIEMVTEVVHGEKYIPHVIEPSFGIDRIIYALLEHSYQEEV--LDGEEREVLRLPPHLAPIKVAVLPLVNKE 469 (551)
T ss_pred eecchhhhhheeeeeccCCcEecceEEEcccCHHHHHHHHHHhhCcccc--ccccccceeccCCccCCceEEEEEecCcH
Confidence 9999999999999999999999999999999999999999999987431 13457899999999999999999998655
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 152 QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
+...+|.+|++.||+.|++|++|+++ ++|+||++||++|+||+||||+ +|+||||+|+|++|++++++++.+.+.
T Consensus 470 el~~~A~eIa~~LR~~GI~VeiD~s~-sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~ 548 (551)
T TIGR00389 470 ELKEIAKEIFQALRKTGIRIKYDDSG-TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIK 548 (551)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHH
Confidence 68899999999999999999999976 5999999999999999999997 899999999999999999999998887
Q ss_pred HH
Q 042110 228 AL 229 (287)
Q Consensus 228 ~l 229 (287)
++
T Consensus 549 e~ 550 (551)
T TIGR00389 549 KL 550 (551)
T ss_pred hh
Confidence 54
No 5
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-33 Score=274.49 Aligned_cols=173 Identities=29% Similarity=0.424 Sum_probs=147.8
Q ss_pred CCeEEEEEeeCCeeEEeecceeeEe--------------eee----ecccCcEEeceEeecceehhHHHHHHHHhccccC
Q 042110 58 KGEVEFYVRKLGKNVCIKKNMLLIS--------------KEK----KKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRR 119 (287)
Q Consensus 58 ~~~~~~~v~~~g~~~~i~~~~v~~~--------------~~~----~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r 119 (287)
-||+++..++++..|+|+.++=.-+ ... ..+.|++++|||||||+|+||++|++++|+|..+
T Consensus 257 ~Gw~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViEpS~G~dR~~~a~l~~~y~~~ 336 (539)
T PRK14894 257 IGVQEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIEPSAGVGRCMLAVMCEGYAEE 336 (539)
T ss_pred CCeEEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceeecCcchhHHHHHHHHHHHhhh
Confidence 3899998888888999998874111 111 3578999999999999999999999999999865
Q ss_pred CCC-----------------------------------------------------------CC----------------
Q 042110 120 PSK-----------------------------------------------------------AG---------------- 124 (287)
Q Consensus 120 ~~~-----------------------------------------------------------~~---------------- 124 (287)
+.. ++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (539)
T PRK14894 337 LTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQP 416 (539)
T ss_pred hhcccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 210 01
Q ss_pred ---CcccccccCCCCCCCceEEEEEecC-ChhHHHHHHHHHHHHHHCCC-eEEEeCCCCCHHHHHHHhHHcCCCEEEEEc
Q 042110 125 ---DEQLNVFRFPPLVAPIKCTVFTLVQ-NQQYEEVAKVISESLSVAGI-SHKIDITGASIGKRYARTDELGVPCAITVD 199 (287)
Q Consensus 125 ---d~~r~~l~lP~~iAP~kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~Gi-~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG 199 (287)
+..|.+|.||+|+||+||+|+|+.+ ++++.++|.+|++.|++.|+ +|.+|+ +.|||+|||+||++|+||+||||
T Consensus 417 ~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dd-sesIGKKyRraDeiGiPy~ITVD 495 (539)
T PRK14894 417 LIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDD-TGAIGKLYRRQDEIGTPFCITVD 495 (539)
T ss_pred CCCcccceecCCCcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcC-CCCHhHHHHhhhccCCCEEEEEe
Confidence 1368999999999999999999995 44577999999999999998 999999 67999999999999999999996
Q ss_pred C-----------CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 200 S-----------TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 200 ~-----------~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+ +|+||||+|+|++|.+++++++++.|.+.+.
T Consensus 496 ~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 496 FDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred ccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 4 3999999999999999999999999987654
No 6
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2.5e-26 Score=227.01 Aligned_cols=167 Identities=32% Similarity=0.502 Sum_probs=137.6
Q ss_pred eEEEEEeeCCeeEEeecce----eeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCC
Q 042110 60 EVEFYVRKLGKNVCIKKNM----LLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPP 135 (287)
Q Consensus 60 ~~~~~v~~~g~~~~i~~~~----v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~ 135 (287)
+.++....++.+|++..++ .++.-....++|++++|+|||+|+|++|+++++++++|..+.. .++++|.+|.||+
T Consensus 281 ~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~-~~~~~r~~l~~P~ 359 (456)
T PRK04173 281 WGELEGIANRTDYDLSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEEL-GGGDKRTVLRLPP 359 (456)
T ss_pred EEEEeeeeccchhhcccchhhcCCCeEEEecCCCCceeeeEEEEecccHHHHHHHHHHHHcccccc-cCCcceeEEECCC
Confidence 5554433357788887532 1221111256889999999999999999999999988864310 1356789999999
Q ss_pred CCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCC
Q 042110 136 LVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDS 211 (287)
Q Consensus 136 ~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt 211 (287)
|+||+||+|+|++++++...+|.+|++.||++ ++|++|+ ..++|+||++|+++|+||+||||+ +|+|+||+|++
T Consensus 360 ~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~-~~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t 437 (456)
T PRK04173 360 ALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDD-SGSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRDRDT 437 (456)
T ss_pred cCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeC-CCCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCC
Confidence 99999999999986435789999999999999 9999997 579999999999999999999997 89999999999
Q ss_pred CCeeeEeHHHHHHHHHHH
Q 042110 212 KDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 212 ~~Q~~V~leel~~~l~~l 229 (287)
++|..++++++.+.|.++
T Consensus 438 ~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 438 MEQVRVKIDELKDYLAEK 455 (456)
T ss_pred CceEEEeHHHHHHHHHhh
Confidence 999999999998888654
No 7
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.94 E-value=1.3e-25 Score=228.59 Aligned_cols=167 Identities=20% Similarity=0.350 Sum_probs=145.9
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecc--eehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPS--SGIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S--~GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+++.+-+++++..+ .+.+|+..+|++||.+ .|++|+|++|+|++...+ +++.+
T Consensus 417 kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~------~~g~g 490 (613)
T PRK03991 417 KVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEE------EEGKV 490 (613)
T ss_pred cEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCcc------ccCce
Confidence 67776654 578888888777777654 5678889899999954 459999999999975521 23578
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
+.||+|+||+||+|+|+++ +...+|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||+ +|+|+|
T Consensus 491 l~~P~~lAP~qV~IIpi~e--~~~~~A~eIa~~Lr~~GirV~lDdr~~slgkKir~A~~~GiP~iIVIG~kEle~g~VtV 568 (613)
T PRK03991 491 PMLPTWLSPTQVRVIPVSE--RHLDYAEEVADKLEAAGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTV 568 (613)
T ss_pred eEcCccccCceEEEEEeCH--HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEE
Confidence 9999999999999999975 6789999999999999999999999999999999999999999999998 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
|+|++++|..++++++.+.|.+++++++
T Consensus 569 r~R~t~eq~~v~l~eli~~l~~~~~~~p 596 (613)
T PRK03991 569 TIREESEKVEMTLEELIERIKEETKGYP 596 (613)
T ss_pred EECCCCceEEeeHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998888655
No 8
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.90 E-value=5e-23 Score=168.94 Aligned_cols=116 Identities=49% Similarity=0.743 Sum_probs=107.0
Q ss_pred HHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHc
Q 042110 111 LCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDEL 190 (287)
Q Consensus 111 LlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~Adei 190 (287)
|+||||..| ++|+.|-++.||+|++|++|+|+|++++++...+|.++++.||++|++|++|++ +++|+|+++|++.
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~ 76 (121)
T cd00858 1 LLEHSFRVR---EGDEGRIVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEI 76 (121)
T ss_pred Cchheeecc---cCCCccEEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhc
Confidence 469999988 788889999999999999999999983236778999999999999999999999 9999999999999
Q ss_pred CCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 191 GVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 191 GiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
|+||+|+||+ +|+|++|++++++|..++++++.+.+..++
T Consensus 77 g~~~~iiiG~~e~~~~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 77 GTPFCVTVDFDTLEDGTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CCCEEEEECcCchhCCEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 9999999997 899999999999999999999998887664
No 9
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.89 E-value=3.6e-22 Score=198.17 Aligned_cols=151 Identities=25% Similarity=0.329 Sum_probs=124.4
Q ss_pred CeeEEeecce-eeEeeee------ecccCcEEeceEeecceeh-hHHHHHHHHhccccCCCCCCCcccccccCCCCCCCc
Q 042110 69 GKNVCIKKNM-LLISKEK------KKEFQRVFTPSVIEPSSGI-DRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPI 140 (287)
Q Consensus 69 g~~~~i~~~~-v~~~~~~------~~~~~~~~~P~VIe~S~GI-eRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~ 140 (287)
|+..++...+ +.....+ .+.+|+...||. .|+|+ +|+|++|+++..+ + .++.||+++||+
T Consensus 216 gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~--~s~Gi~eRli~~lie~~~d--------~--~gl~~P~~iaP~ 283 (472)
T TIGR00408 216 GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQ--TSYGISTRVIGALIAIHSD--------E--KGLVLPPRVAPI 283 (472)
T ss_pred CCEEEEeeeecccccccHhcCCEEECCCCCEEeeEE--ccccHHHHHHHHHHHHhCC--------C--CceeeChhhCcc
Confidence 5566665544 3322111 456788877775 89999 8999999987322 1 257899999999
Q ss_pred eEEEEEe--cC--ChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCC
Q 042110 141 KCTVFTL--VQ--NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSK 212 (287)
Q Consensus 141 kV~Ilpl--~~--~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~ 212 (287)
||+|+|+ .+ +++...+|.+|++.||+.|++|++|+++.|+|+||++|+++|+||+|+||+ +|+|+||+|+++
T Consensus 284 qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~ 363 (472)
T TIGR00408 284 QVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTG 363 (472)
T ss_pred eEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCC
Confidence 9999998 32 146789999999999999999999998889999999999999999999998 899999999999
Q ss_pred CeeeEeHHHHHHHHHHHhc
Q 042110 213 DQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 213 ~Q~~V~leel~~~l~~l~~ 231 (287)
+|..++++++.+.|.+++.
T Consensus 364 eq~~v~l~el~~~l~~~l~ 382 (472)
T TIGR00408 364 EKYQVSLDQLEERVVELLN 382 (472)
T ss_pred ceEEEEHHHHHHHHHHHHH
Confidence 9999999999888766554
No 10
>PLN02837 threonine-tRNA ligase
Probab=99.89 E-value=4.1e-22 Score=203.35 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=139.6
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+++.+.+++|...+ .+.+|++.+|+|||++. |++|++.+|+|+. +|
T Consensus 442 kid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~~--------~g----- 508 (614)
T PLN02837 442 KIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHY--------AG----- 508 (614)
T ss_pred ceeeEeeccCCceeeecceeEeecchhhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHHc--------CC-----
Confidence 78888877 489999999998886544 67788899999999986 7999999999872 12
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
.||+|+||+||+|+|+++ +...+|.+|++.||++|++|++| .+.++|+|+++|++.|+||+|+||+ +|+|+|
T Consensus 509 -~~P~~laP~qV~IIpi~~--~~~~~A~~Ia~~Lr~~GirVev~-~~~slgkkir~A~~~gip~~IiIG~~E~e~~~VtV 584 (614)
T PLN02837 509 -DFPLWLAPVQARVLPVTD--NELEYCKEVVAKLKAKGIRAEVC-HGERLPKLIRNAETQKIPLMAVVGPKEVETRTLTV 584 (614)
T ss_pred -CCCCCCCCccEEEEEeCh--HHHHHHHHHHHHHHHCCCEEEEe-CCCCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEE
Confidence 389999999999999975 56799999999999999999995 4789999999999999999999997 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
|+|++++|..++++++.+.|.+.++.+.
T Consensus 585 r~r~~geq~~v~~~el~~~l~~~~~~~~ 612 (614)
T PLN02837 585 RSRHGGELGTMPVDDFINRIQLAVENRT 612 (614)
T ss_pred EECCCCceeEeeHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988777654
No 11
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.89 E-value=1.6e-22 Score=204.59 Aligned_cols=133 Identities=14% Similarity=0.297 Sum_probs=119.2
Q ss_pred ecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCCh-hHHHHHHHHHHHH
Q 042110 86 KKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ-QYEEVAKVISESL 164 (287)
Q Consensus 86 ~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~-e~~~~A~~Ia~~L 164 (287)
.+.+|+...+.+...++||+|++++++|++++. .++.||+++||+||+|+|+..++ +...+|.+|++.|
T Consensus 430 ~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~----------~Gl~wP~~iAP~qV~Iip~~~~~~~~~~~a~~l~~~L 499 (568)
T TIGR00409 430 LDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDE----------RGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSEL 499 (568)
T ss_pred ECCCCCEEEEEEeCCcchHHHHHHHHHHHhCcc----------CCCcCChhhCCeEEEEEEcCCChHHHHHHHHHHHHHH
Confidence 567888887878677778899999999997652 25899999999999999996543 6778999999999
Q ss_pred HHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 165 SVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 165 R~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
+++|++|.+|+++.++|+||++||.+|+||+||||. +|+|+||+|++++|..++++++.+.|..
T Consensus 500 ~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 500 LAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred HhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 999999999999999999999999999999999997 8999999999999999999999988753
No 12
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.89 E-value=2e-22 Score=203.00 Aligned_cols=159 Identities=19% Similarity=0.328 Sum_probs=135.3
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+++.+.+++|...+ .+.+|.+..|++||+++ |+||++++|++|. . +
T Consensus 364 kiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~-~-------G----- 430 (545)
T PRK14799 364 KIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHF-K-------G----- 430 (545)
T ss_pred ccceEehhhcCchhhhhhhhhhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHc-C-------C-----
Confidence 45665544 366677776666665332 46678888999999865 8999999998872 2 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
.||+|++|+||+|+|+++ +...+|.+|++.||++|++|++|++++++|+|+++|++.|+||+||||+ +|+|+|
T Consensus 431 -~~P~wlaP~qV~Iipi~e--~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtV 507 (545)
T PRK14799 431 -KLPTWLSSVQVRVLPITD--EVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTV 507 (545)
T ss_pred -CCCCCCCCceEEEEEcCH--HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEE
Confidence 489999999999999975 5788999999999999999999999999999999999999999999998 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
|+|++++|..++++++++.+.+.+..+.
T Consensus 508 R~r~~~eq~~v~l~eli~~l~~~i~~~~ 535 (545)
T PRK14799 508 RARGNIEVRNVKFEKFLELLITEIAQRD 535 (545)
T ss_pred EECCCCceEEEcHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988777643
No 13
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=4.3e-22 Score=201.10 Aligned_cols=158 Identities=20% Similarity=0.369 Sum_probs=133.0
Q ss_pred eEEEEEee-CCeeEEeecceeeEeee------eecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKE------KKKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~------~~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+.+.+.++++... -.+.+|.+.+|.|||+++ |+||++++|+++ +.
T Consensus 402 ~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~-~~------------- 467 (575)
T PRK12305 402 KIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEH-YA------------- 467 (575)
T ss_pred cEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHH-hC-------------
Confidence 45655544 36777777666544321 135677888999999985 599999999886 21
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
..||+|++|.||+|+|+++ +...+|.+|++.||++||+|++|+++.++|+||++|++.|+||+||||+ +|+|+|
T Consensus 468 ~~~p~~~~p~~v~Ii~~~~--~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~v 545 (575)
T PRK12305 468 GAFPFWLAPVQVVIIPVAD--AHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSV 545 (575)
T ss_pred CCCCCCCCCccEEEEEeCh--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEechhhhCCEEEE
Confidence 1589999999999999976 5788999999999999999999999999999999999999999999998 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
|+|++++|..++++++.+.|+++++++
T Consensus 546 r~~~~~~q~~v~~~~l~~~l~~~~~~~ 572 (575)
T PRK12305 546 RTRDGEQLNGMPLDEFIELIKEKIAER 572 (575)
T ss_pred EEcCCCceeeeeHHHHHHHHHHHHhcc
Confidence 999999999999999999998877653
No 14
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.89 E-value=3.1e-22 Score=202.33 Aligned_cols=132 Identities=20% Similarity=0.332 Sum_probs=119.1
Q ss_pred ecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042110 86 KKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV-QNQQYEEVAKVISESL 164 (287)
Q Consensus 86 ~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~-~~~e~~~~A~~Ia~~L 164 (287)
.+.+|++..|++-..++||+|++++++|++.+. .++.||+++||+||+|+|+. .+++...+|.+|++.|
T Consensus 425 ~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~----------~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L 494 (565)
T PRK09194 425 LDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDE----------KGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAEL 494 (565)
T ss_pred ECCCCCEEeEEEeeEechHHHHHHHHHHhhccc----------cCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHH
Confidence 466888888888777888999999999986542 25899999999999999997 3346789999999999
Q ss_pred HHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 165 SVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 165 R~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
+++|++|.+|+++.++|+||++||.+|+||+||||+ +|+|+||+|++++|..++++++.+.|.
T Consensus 495 ~~~gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 495 QAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred hccCCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 999999999999999999999999999999999997 899999999999999999999988775
No 15
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=4.3e-22 Score=203.74 Aligned_cols=159 Identities=18% Similarity=0.295 Sum_probs=134.3
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+.+...++++...+ .+.+|+..+|+||++++ |+||++++|+++. .
T Consensus 467 ~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~--------------~ 532 (639)
T PRK12444 467 KIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF--------------G 532 (639)
T ss_pred eEEEEeecCCCChhcccceeeecccccccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhc--------------C
Confidence 56666554 355666666666663322 56788899999999984 7999999998872 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
..||+|++|+||+|+|++++ +...+|.+|++.||++|++|++|.+++|+|+||++|++.|+||+||||+ +|+|+|
T Consensus 533 ~~~p~~~ap~qV~Ii~~~~~-~~~~~a~~la~~LR~~Gi~veid~~~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~v 611 (639)
T PRK12444 533 GAFPAWLAPVQVKVIPVSNA-VHVQYADEVADKLAQAGIRVERDERDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNV 611 (639)
T ss_pred CCCCCccCCceEEEEEcccH-HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEE
Confidence 26899999999999999751 3678999999999999999999999999999999999999999999997 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
|+|++++|..++++++.+.+.+.++++
T Consensus 612 r~~~t~~q~~i~l~el~~~l~~~~~~~ 638 (639)
T PRK12444 612 RKYGEEKSEVIELDMFVESIKEEIKNR 638 (639)
T ss_pred EECCCCceeeeeHHHHHHHHHHHhhcC
Confidence 999999999999999999998776653
No 16
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.89 E-value=5.3e-22 Score=199.86 Aligned_cols=153 Identities=21% Similarity=0.350 Sum_probs=124.8
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+++++.+++|.... .+.+|...+|+||+.+| |+||++++|+++. +
T Consensus 396 ~~~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~--------~------ 461 (563)
T TIGR00418 396 KIDFAFKDALGREWQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKY--------A------ 461 (563)
T ss_pred eEEEEeecCCCCceeeceeeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhc--------c------
Confidence 34444432 244555554444444222 35578889999988876 9999999998762 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
..||+|++|.+|+|+|+++ +...+|.+|++.||++|++|++|++++++|+|+++|++.|+||+||||+ +|+|+|
T Consensus 462 ~~~p~~~~p~~v~vi~~~~--~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~v 539 (563)
T TIGR00418 462 GNFPLWLAPVQVVVIPVNE--RHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNV 539 (563)
T ss_pred CCCCCcCCCceEEEEEccc--hHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEE
Confidence 1478889999999999985 5778999999999999999999999999999999999999999999997 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHH
Q 042110 207 RERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~ 228 (287)
|+|++++|..++++++++.+++
T Consensus 540 k~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 540 RTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred EECCCCccceeeHHHHHHHHHh
Confidence 9999999999999999887764
No 17
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.88 E-value=5.3e-22 Score=165.52 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=96.2
Q ss_pred cccccCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHCCCeEEEeCCCC---CHHHHHHHhHHcCCCEEEEEcC---
Q 042110 128 LNVFRFPPLVAPIKCTVFTLV-QNQQYEEVAKVISESLSVAGISHKIDITGA---SIGKRYARTDELGVPCAITVDS--- 200 (287)
Q Consensus 128 r~~l~lP~~iAP~kV~Ilpl~-~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~---SIGKr~k~AdeiGiPy~IiIG~--- 200 (287)
+.+|.||+.+||+||+|+|+. +++++.++|.+|++.|+++|++|.+|++.. ++|+||+++|.+|+||+|+||+
T Consensus 16 ~~Gl~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG~~~l 95 (128)
T cd02426 16 RQVLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTL 95 (128)
T ss_pred CcEEECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEECCCcc
Confidence 478999999999999999994 346788999999999999999999999875 8999999999999999999998
Q ss_pred -CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 201 -TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 201 -~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+|+|++|+|+|+++++++++++.+.+.++++
T Consensus 96 ~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 96 ENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred cCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 8999999999999999999999999987654
No 18
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.87 E-value=2.5e-21 Score=190.53 Aligned_cols=132 Identities=20% Similarity=0.332 Sum_probs=113.8
Q ss_pred ecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecC-ChhHHHHHHHHHHHH
Q 042110 86 KKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQ-NQQYEEVAKVISESL 164 (287)
Q Consensus 86 ~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~-~~e~~~~A~~Ia~~L 164 (287)
.+.+|++...++--.++||+|++++|+|+..+. .++.||+|+||+||+|+|+.. +++...+|.+|++.|
T Consensus 302 ~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~----------~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L 371 (439)
T PRK12325 302 QGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDD----------KGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAAL 371 (439)
T ss_pred ECCCCCEEeEEEeeeECCHHHHHHHHHHHhCcc----------CCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 466777766555444567789999999985432 246899999999999999942 246789999999999
Q ss_pred HHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 165 SVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 165 R~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
|++|++|++|+++.++|+||++|+++|+||+||||+ +|+|+||+|++++|..++++++++.|.
T Consensus 372 ~~~Gi~v~~D~~~~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 372 SAAGIDVLYDDTDERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred HHCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 999999999999999999999999999999999998 899999999999999999999987764
No 19
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.87 E-value=6.9e-21 Score=189.21 Aligned_cols=152 Identities=24% Similarity=0.321 Sum_probs=122.8
Q ss_pred CCeeEEeecce-eeEeeee------ecccCcEEeceEeecceeh-hHHHHHHHHhccccCCCCCCCcccccccCCCCCCC
Q 042110 68 LGKNVCIKKNM-LLISKEK------KKEFQRVFTPSVIEPSSGI-DRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAP 139 (287)
Q Consensus 68 ~g~~~~i~~~~-v~~~~~~------~~~~~~~~~P~VIe~S~GI-eRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP 139 (287)
+|+..++.... +.....+ .+.+|+...| +..|+|+ +|+|++|+|+..+ + .++.||+++||
T Consensus 220 dgr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v--~~~s~G~~~R~i~alie~~~D--------~--~Gl~lP~~iAP 287 (477)
T PRK08661 220 DGKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYV--HQTSWGVSTRLIGALIMTHGD--------D--KGLVLPPKIAP 287 (477)
T ss_pred CCCEEEEEEecccccchhHhcCCEEECCCCCEeee--EEecccHHHHHHHHHHHHhCc--------c--CCCccCcccCC
Confidence 36666665542 3332111 3556665544 5679998 7999999998432 1 35789999999
Q ss_pred ceEEEEEecC----ChhHHHHHHHHHHHHHHCCCeEEEeC-CCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECC
Q 042110 140 IKCTVFTLVQ----NQQYEEVAKVISESLSVAGISHKIDI-TGASIGKRYARTDELGVPCAITVDS----TSSVTIRERD 210 (287)
Q Consensus 140 ~kV~Ilpl~~----~~e~~~~A~~Ia~~LR~~Gi~v~vD~-s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrd 210 (287)
+||+|+|+.. .++...+|.+|++.||++|++|.+|+ ++.++|+||++|+++|+||+|+||+ +|+|+||+|+
T Consensus 288 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rd 367 (477)
T PRK08661 288 IQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRD 367 (477)
T ss_pred CeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECC
Confidence 9999999932 24678899999999999999999999 7899999999999999999999998 8999999999
Q ss_pred CCCeeeEeHHHHHHHHHHHhc
Q 042110 211 SKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 211 t~~Q~~V~leel~~~l~~l~~ 231 (287)
+++|..++++++.+.|.+++.
T Consensus 368 tgek~~v~~~el~~~l~~~l~ 388 (477)
T PRK08661 368 TLEKETVPLDELVEKVPELLE 388 (477)
T ss_pred CCceEEEEHHHHHHHHHHHHH
Confidence 999999999999888766544
No 20
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=4.7e-21 Score=195.49 Aligned_cols=158 Identities=22% Similarity=0.380 Sum_probs=132.2
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+.|...++++.... ....|+..+|.|||+++ |+||++++|+++ +. +
T Consensus 465 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~-~~-------~----- 531 (638)
T PRK00413 465 KIDFQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEH-YA-------G----- 531 (638)
T ss_pred eEEEEeecCCCCeEEeccEeecccChhhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHH-cC-------C-----
Confidence 44454433 366777776666554321 34467778999999986 699999999876 21 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
.||+|++|.||+|+|+++ +...+|.+|++.||++|++|++|+++.++|+|+++|++.|+||+||||+ +|+|+|
T Consensus 532 -~~p~~~~p~~v~Ii~~~~--~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~v 608 (638)
T PRK00413 532 -AFPTWLAPVQVVVLPITD--KHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSV 608 (638)
T ss_pred -CCCcccCcceEEEEEeCh--hHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHhhccCCCEEEEEcchhhhcCeEEE
Confidence 479999999999999985 5778999999999999999999999999999999999999999999997 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
|+|++++|..++++++++.|+++++++
T Consensus 609 r~~~~~~q~~i~~~~l~~~i~~~~~~~ 635 (638)
T PRK00413 609 RRRGGKDLGTMSLDEFIERLLEEIASR 635 (638)
T ss_pred EECCCCccceeeHHHHHHHHHHHHhhc
Confidence 999999999999999999999887764
No 21
>PLN02908 threonyl-tRNA synthetase
Probab=99.85 E-value=2.2e-20 Score=192.77 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=132.0
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCc-EEeceEeecce--ehhHHHHHHHHhccccCCCCCCCcccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQR-VFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLN 129 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~-~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~ 129 (287)
++++.+.+ -++.+++.+.+++|.... .++++. +..|.+||.|+ |+||++++|++|. .
T Consensus 514 kid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~-~------------ 580 (686)
T PLN02908 514 KIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHY-A------------ 580 (686)
T ss_pred ceEEEEEeccCCEeeccceeecccCHhhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHc-C------------
Confidence 55665554 356777777776665321 345555 57999998876 8999999998872 1
Q ss_pred cccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEE
Q 042110 130 VFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVT 205 (287)
Q Consensus 130 ~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVT 205 (287)
..||+|++|.||+|+|+++ +...+|.+|++.||++|++|++|.++.++|||+++|++.|+||++|||+ +|+|+
T Consensus 581 -g~~p~wlsp~qv~Vipv~~--~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~viivG~~E~~~~~V~ 657 (686)
T PLN02908 581 -GKWPFWLSPRQAIVVPISE--KSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVVGEAEAATGTVN 657 (686)
T ss_pred -CCCCCCCCCceEEEEEECH--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchHHhCCEEE
Confidence 1589999999999999986 5788999999999999999999999999999999999999999999997 89999
Q ss_pred EEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 206 IRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 206 LRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
||+|++++|..++++++++.+.++.+.
T Consensus 658 vr~~~~~~q~~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 658 VRTRDNVVHGEKKIEELLTEFKEERAE 684 (686)
T ss_pred EEECCCCceeeeeHHHHHHHHHHHHhh
Confidence 999999999999999999998877653
No 22
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=6.7e-20 Score=185.35 Aligned_cols=159 Identities=26% Similarity=0.435 Sum_probs=143.5
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce-e-hhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS-G-IDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~-G-IeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ -|+.+++++.|++|...+ .+.+|++.+|.|||.+. | ++|+++.|+|| +. |
T Consensus 413 Kid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~-~~------G------ 479 (589)
T COG0441 413 KIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEH-YA------G------ 479 (589)
T ss_pred ccceEEEeccCcceecceEEEecCChhhceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHh-cc------C------
Confidence 67777765 588999999999998775 67789999999999995 4 99999999997 32 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
.||.|+||+||+|+|+++ +...+|.++++.|++.||+|++|+++.++|++++.|...++||+|+||+ +++|++
T Consensus 480 -~~P~WLaPvQv~VipV~~--~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~v 556 (589)
T COG0441 480 -ALPTWLAPVQVRVIPVAD--EHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVV 556 (589)
T ss_pred -CCcccCCccEEEEEEeCh--HHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEEEEEchhhhccCceEE
Confidence 699999999999999987 5779999999999999999999999999999999999999999999999 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
|.|.++++..++++++++.+++.+.++.
T Consensus 557 R~r~~~~~~~~~l~e~i~~ik~e~~~~~ 584 (589)
T COG0441 557 RRRGGKQQKSMTLEELVEELKKEIEGRP 584 (589)
T ss_pred EEccCCccccccHHHHHHHHHHHhhccc
Confidence 9999999999999999999988776543
No 23
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.83 E-value=5.4e-20 Score=177.04 Aligned_cols=114 Identities=18% Similarity=0.385 Sum_probs=106.0
Q ss_pred ehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHH
Q 042110 103 GIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGK 182 (287)
Q Consensus 103 GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGK 182 (287)
-+||++|++|.+++.. .++.||+|+||++|+|+|+++ +...+|.+|++.||++|++|++|++++++|+
T Consensus 248 ~~~r~~~~~L~~a~~e----------~~~~LPpwLAP~qV~IIpl~e--el~e~AlkLA~eLR~aGIrVeiDl~srSLgK 315 (387)
T PRK14938 248 DVGLLVYYFLLESIRK----------QPPTLPDWLNPIQVRILPVKK--DFLDFSIQVAERLRKEGIRVNVDDLDDSLGN 315 (387)
T ss_pred EecHHHHHHHHHhhhH----------HhCcCCCccCcceEEEEEeCh--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Confidence 4899999999999863 278999999999999999975 5778999999999999999999999999999
Q ss_pred HHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 183 RYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 183 r~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
||++|++.|+||+||||+ +|+|+||+|++++|..++++++.+.+++
T Consensus 316 QiK~AdK~GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk 365 (387)
T PRK14938 316 KIRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKR 365 (387)
T ss_pred HHHHHHHcCCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHh
Confidence 999999999999999997 8999999999999999999999887774
No 24
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.83 E-value=9.3e-20 Score=162.52 Aligned_cols=102 Identities=26% Similarity=0.416 Sum_probs=93.6
Q ss_pred cccCCCCCCCceEEEEEecCC----hhHHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHHHHHhHHcCCCEEEEEcC----
Q 042110 130 VFRFPPLVAPIKCTVFTLVQN----QQYEEVAKVISESLSVAGISHKIDITGA-SIGKRYARTDELGVPCAITVDS---- 200 (287)
Q Consensus 130 ~l~lP~~iAP~kV~Ilpl~~~----~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~-SIGKr~k~AdeiGiPy~IiIG~---- 200 (287)
+|.||||+||+||+|+|+..+ +....++.+|++.|+++||+|++|+++. ++|+||++|+..|+||+|+||+
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 478999999999999999753 2377899999999999999999999888 9999999999999999999998
Q ss_pred CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 201 TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 201 ~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+|+|+|++|++++|..++++++.+.|..++.
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~ 111 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLD 111 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHH
Confidence 8999999999999999999999888776554
No 25
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.78 E-value=1.5e-18 Score=135.01 Aligned_cols=89 Identities=25% Similarity=0.471 Sum_probs=83.8
Q ss_pred eEEEEEecC-ChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCee
Q 042110 141 KCTVFTLVQ-NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQM 215 (287)
Q Consensus 141 kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~ 215 (287)
||+|+|++. +++...+|.+|++.||++||++++|+++.++|+||++|+..|+||+|+||+ +|+|+||+|++++|.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~ 80 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQE 80 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEE
Confidence 699999987 346789999999999999999999999999999999999999999999998 999999999999999
Q ss_pred eEeHHHHHHHHHHH
Q 042110 216 RVHVDDVASIVKAL 229 (287)
Q Consensus 216 ~V~leel~~~l~~l 229 (287)
.++++++.++|+++
T Consensus 81 ~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 81 TVSLEELIEYLKEN 94 (94)
T ss_dssp EEECCHHHHHHHHH
T ss_pred EEEHHHHHHHHhhC
Confidence 99999999998763
No 26
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.74 E-value=2.6e-17 Score=127.46 Aligned_cols=88 Identities=20% Similarity=0.425 Sum_probs=81.1
Q ss_pred CceEEEEEecCC-hhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCC
Q 042110 139 PIKCTVFTLVQN-QQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKD 213 (287)
Q Consensus 139 P~kV~Ilpl~~~-~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~ 213 (287)
|+||+|+|+..+ ++...+|.++++.||++|++|++|++..++|+|+++|++.|+||+|+||+ +|+|+||+|++++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCc
Confidence 799999999753 34678999999999999999999999999999999999999999999997 8999999999999
Q ss_pred eeeEeHHHHHHHH
Q 042110 214 QMRVHVDDVASIV 226 (287)
Q Consensus 214 Q~~V~leel~~~l 226 (287)
|..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~l 93 (94)
T cd00861 81 KEEISIDELLEFL 93 (94)
T ss_pred ceEEeHHHHHHhh
Confidence 9999999987765
No 27
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6e-17 Score=159.04 Aligned_cols=122 Identities=27% Similarity=0.413 Sum_probs=107.1
Q ss_pred cCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCC
Q 042110 89 FQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAG 168 (287)
Q Consensus 89 ~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~G 168 (287)
-|..-+|.| +.|+|+|||+.+|.+.+.. .+.-++.+|+|+++++. ...+|..+++.||++|
T Consensus 302 ~gG~~~pav-GFaiGveRl~~~l~~~~~~----------------~~~~~~~~v~v~~~~~~--~~~~a~~la~~LR~~g 362 (429)
T COG0124 302 FGGKPTPAV-GFAIGVERLILALEEEGKE----------------DPVETRVDVYVVPLGED--AEPEALKLAQKLRAAG 362 (429)
T ss_pred hCCCCCCce-eEehHHHHHHHHHHHcCCC----------------CCcCCCCCEEEEEcCch--hHHHHHHHHHHHHHcC
Confidence 345569999 9999999999999766421 11225789999999873 4689999999999999
Q ss_pred CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 169 ISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
+++++|.+.+++++||++||+.|++|+||+|+ +|+|+|||+.|++|..++++++.+.+...
T Consensus 363 ~~~~~~~~~r~~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~ 427 (429)
T COG0124 363 ISVEVDYSGRKLKKQFKYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKEL 427 (429)
T ss_pred CcEEEEeccccHHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhh
Confidence 99999999999999999999999999999999 89999999999999999999999988754
No 28
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.69 E-value=4.2e-16 Score=119.42 Aligned_cols=86 Identities=24% Similarity=0.445 Sum_probs=79.9
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCe
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQ 214 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q 214 (287)
|++|+|++.++ +....|.++++.||+.|++|++|+++.++|+|+++|++.|+||+|+||. +|++++++|.+++|
T Consensus 1 p~~v~ii~~~~--~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~ 78 (91)
T cd00860 1 PVQVVVIPVTD--EHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDL 78 (91)
T ss_pred CeEEEEEeeCc--hHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcc
Confidence 78999999875 5678999999999999999999999999999999999999999999997 88999999999999
Q ss_pred eeEeHHHHHHHH
Q 042110 215 MRVHVDDVASIV 226 (287)
Q Consensus 215 ~~V~leel~~~l 226 (287)
..++++++.+.|
T Consensus 79 ~~~~~~~~~~~~ 90 (91)
T cd00860 79 GSMSLDEFIEKL 90 (91)
T ss_pred ceEcHHHHHHHh
Confidence 999999887654
No 29
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.64 E-value=3e-15 Score=147.09 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=105.0
Q ss_pred cCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCC
Q 042110 89 FQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAG 168 (287)
Q Consensus 89 ~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~G 168 (287)
.|...+|.| +.|+|+|||+.+|.+. .. .| ..|.+|+|+|+++ +...+|.++++.||++|
T Consensus 294 fg~~~~Pav-Gfa~g~erl~~~l~~~-~~---------------~~--~~~~~v~v~~~~~--~~~~~a~~ia~~LR~~G 352 (430)
T CHL00201 294 LGGPKTPAV-GCAIGLERLLLIAKDN-II---------------LP--KQSIDVYIATQGL--KAQKKGWEIIQFLEKQN 352 (430)
T ss_pred hCCCCCCee-EEEecHHHHHHHHhcc-cc---------------CC--CCCCCEEEEEcCH--HHHHHHHHHHHHHHhCC
Confidence 344568999 9999999999876432 11 12 2467899999875 56789999999999999
Q ss_pred CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 169 ISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
++|++|....++++++++|++.|+||++++|+ +|+|+||++.+++|..++++++++.+.++.+
T Consensus 353 i~veid~~~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~ 419 (430)
T CHL00201 353 IKFELDLSSSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKK 419 (430)
T ss_pred CeEEEeeCCCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHH
Confidence 99999998899999999999999999999997 8999999999999999999999998887654
No 30
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.62 E-value=5.7e-15 Score=113.57 Aligned_cols=88 Identities=28% Similarity=0.488 Sum_probs=79.3
Q ss_pred CceEEEEEecC-ChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCC
Q 042110 139 PIKCTVFTLVQ-NQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKD 213 (287)
Q Consensus 139 P~kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~ 213 (287)
|++|+|+|.++ .+....+|.++++.||+.|+++++|+++.++|+++++|++.|+||++++|+ +++++||+|++++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~ 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCc
Confidence 68999999864 114678999999999999999999998899999999999999999999997 8899999999999
Q ss_pred eeeEeHHHHHHHH
Q 042110 214 QMRVHVDDVASIV 226 (287)
Q Consensus 214 Q~~V~leel~~~l 226 (287)
|..++++++.+.+
T Consensus 81 ~~~~~~~~~~~~i 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred eeEEEHHHHHhhc
Confidence 9999999886653
No 31
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=1.3e-14 Score=140.78 Aligned_cols=115 Identities=25% Similarity=0.397 Sum_probs=102.2
Q ss_pred EEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeE
Q 042110 92 VFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171 (287)
Q Consensus 92 ~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v 171 (287)
...|.| +.|+|+|||+.++.++. . +|.+|+|+|+++ +...+|.++++.||++|++|
T Consensus 293 ~~~pav-Gfs~~le~l~~~l~~~~-------------------~--~~~~vlI~~~~~--~~~~~a~~i~~~Lr~~Gi~v 348 (412)
T PRK00037 293 PPTPAV-GFAIGVERLLLLLEELG-------------------E--EPVDVYVVPLGE--DAELAALKLAEKLRAAGIRV 348 (412)
T ss_pred CCCceE-EEEEcHHHHHHHHHhcC-------------------C--CCCCEEEEEeCh--HHHHHHHHHHHHHHHCCCeE
Confidence 456888 99999999998876541 0 688999999875 45678999999999999999
Q ss_pred EEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 172 KIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 172 ~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
++|..+.++++++++|++.|+||+|+||+ +|+|+||++++++|..++++++.+.|+++.
T Consensus 349 ~i~~~~~~~~~~~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 349 ELDYGGRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 99998789999999999999999999997 899999999999999999999999988754
No 32
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.1e-14 Score=142.31 Aligned_cols=156 Identities=19% Similarity=0.292 Sum_probs=133.4
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce-e-hhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS-G-IDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~-G-IeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
+++|.+.+ .|+.+++-+.+++|+-.. ++.+|+..+|.+|++++ | ++|++..|+|+ |.
T Consensus 385 KIDi~l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~-~~------------- 450 (560)
T KOG1637|consen 385 KIDITLDDALGRKHQCATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLES-YG------------- 450 (560)
T ss_pred eeeeEhhhhcCcccceeeeeecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHH-hC-------------
Confidence 67777765 467777777788877555 66778899999999984 5 99999888887 33
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
-+||.|++|.|+.|+|++. ....+|.++.+.|+.+|+.+++|.++.+|+|+++.|......|++|||+ .++|.|
T Consensus 451 gkwPFWlSPRq~~vIpVse--~~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnV 528 (560)
T KOG1637|consen 451 GKWPFWLSPRQAVVIPVSE--GPLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNV 528 (560)
T ss_pred CCCCeeeccceEEEEECCC--cchhHHHHHHHHHHhhhceeecCCccchHHHHHhhhhhcceeEEEEEchhhhhcCceee
Confidence 1689999999999999996 4678999999999999999999999999999999999999999999999 899999
Q ss_pred EECCCC---CeeeEeHHHHHHHHHHHhc
Q 042110 207 RERDSK---DQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 207 Rdrdt~---~Q~~V~leel~~~l~~l~~ 231 (287)
|.|++. .+-.++++++.+.+.++-+
T Consensus 529 r~Rd~~~~~~~~~~tie~~~~~~~~l~~ 556 (560)
T KOG1637|consen 529 RTRDNRDNKTESEMTIEELSDEFKELKS 556 (560)
T ss_pred eccccccccccceeeHHHHHHHHHHhHh
Confidence 999654 4668899999888876554
No 33
>PLN02530 histidine-tRNA ligase
Probab=99.55 E-value=4.3e-14 Score=141.04 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=98.7
Q ss_pred cEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCe
Q 042110 91 RVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGIS 170 (287)
Q Consensus 91 ~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~ 170 (287)
..-.|.| +.|+|++||+.++.+.+ .+|.|.+|.+|+|+++++ +...+|.++++.||++|++
T Consensus 370 g~~~pAv-GFa~g~~~l~~~l~~~g----------------~~p~~~~~~dVlVi~~~~--~~~~~A~~ia~~LR~~Gi~ 430 (487)
T PLN02530 370 GEDTPAC-GFGFGDAVIVELLKEKG----------------LLPELPHQVDDVVFALDE--DLQGAAAGVASRLREKGRS 430 (487)
T ss_pred CCCCCee-EEEEhHHHHHHHHHhcC----------------CCCCCCCCCcEEEEEcCh--HHHHHHHHHHHHHHHCCCe
Confidence 3457988 99999999876653321 246677899999999876 5678999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHH
Q 042110 171 HKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDV 222 (287)
Q Consensus 171 v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel 222 (287)
|++|..+.++++++++|++.|+||+|+||+ +|+|+||++.+++|..++++++
T Consensus 431 vevd~~~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 431 VDLVLEPKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred EEEecCCCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 999998899999999999999999999997 8999999999999999998764
No 34
>PLN02972 Histidyl-tRNA synthetase
Probab=99.44 E-value=2.2e-12 Score=134.02 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=102.0
Q ss_pred EEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeE
Q 042110 92 VFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171 (287)
Q Consensus 92 ~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v 171 (287)
+.+|.| +.|||+|||+.++.+.+... . . .++ -.+.+|+|++.++ +....+.++++.||++||++
T Consensus 635 ~~vPAV-GFSiGIERL~~~L~~~~~~~-----~-----~-~~~--~~~~dVlV~s~g~--~~l~~alkia~~LR~aGI~a 698 (763)
T PLN02972 635 KQVPAV-GVSLGIERVFAIMEQQEEEK-----S-----Q-VIR--PTETEVLVSIIGD--DKLALAAELVSELWNAGIKA 698 (763)
T ss_pred CCCCEE-EEEecHHHHHHHHHHcccCC-----C-----C-CCC--CCCCcEEEEEeCH--HHHHHHHHHHHHHHHCCCEE
Confidence 457888 99999999998775542110 0 0 011 1357899999875 56778999999999999999
Q ss_pred EEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 172 KIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 172 ~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+++. ..++++++++|++.|+||+|++|+ +|+|+||++.+++|..++++++++.|++.+.
T Consensus 699 E~~~-~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 699 EYKV-STRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred EEeC-CCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 9977 779999999999999999999997 8999999999999999999999999887654
No 35
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.40 E-value=5.3e-12 Score=95.12 Aligned_cols=84 Identities=24% Similarity=0.346 Sum_probs=76.2
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeee
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMR 216 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~ 216 (287)
+|+|+|.++ +....|.+++..||+.|++|+++..+.++++++++|.+.|+|+++++|+ ++++++++++++++..
T Consensus 3 ~v~i~~~~~--~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~ 80 (91)
T cd00859 3 DVYVVPLGE--GALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQET 80 (91)
T ss_pred cEEEEEcCh--HHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEE
Confidence 688998875 5668899999999999999999997789999999999999999999996 7899999999999999
Q ss_pred EeHHHHHHHH
Q 042110 217 VHVDDVASIV 226 (287)
Q Consensus 217 V~leel~~~l 226 (287)
++++++.+.+
T Consensus 81 ~~~~~~~~~~ 90 (91)
T cd00859 81 VALDELVEEL 90 (91)
T ss_pred EeHHHHHHHh
Confidence 9998887654
No 36
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.36 E-value=9.1e-12 Score=122.02 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=91.0
Q ss_pred EeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH-CCCeE
Q 042110 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSV-AGISH 171 (287)
Q Consensus 93 ~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~-~Gi~v 171 (287)
-.|.| +.|+|+|||+.++...+ .++ .|.+|+|+|+++ ...|.++++.||+ .|++|
T Consensus 312 ~~pAv-Gfa~~~~~l~~~l~~~~-----------------~~~--~~~dvlI~~~~~----~~~a~~ia~~Lr~~~Gi~v 367 (423)
T PRK12420 312 NYPTV-GISFGLDVIYTALSQKE-----------------TIS--STADVFIIPLGT----ELQCLQIAQQLRSTTGLKV 367 (423)
T ss_pred CCCce-eEEEcHHHHHHHHHhcC-----------------CCC--CCceEEEEEcCC----HHHHHHHHHHHHhhcCCeE
Confidence 36877 99999999997764221 011 478999999864 2358999999999 99999
Q ss_pred EEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHH
Q 042110 172 KIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDV 222 (287)
Q Consensus 172 ~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel 222 (287)
++|..+.++++++++|.+.|+||+++||+ +|+|+||++++++|..++++++
T Consensus 368 e~~~~~~~l~~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 368 ELELAGRKLKKALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred EEecCCcCHHHHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 99999999999999999999999999997 7899999999999999998875
No 37
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.35 E-value=9e-12 Score=120.51 Aligned_cols=101 Identities=27% Similarity=0.373 Sum_probs=87.6
Q ss_pred EeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEE
Q 042110 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHK 172 (287)
Q Consensus 93 ~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~ 172 (287)
.+|.| +.|+|+|||+.++.+.+ ..|++.+|.+|+|++++. +....+.++++.||++|++|+
T Consensus 293 ~~~av-Gfs~~~~~l~~~l~~~~----------------~~~~~~~~~~vlV~~~~~--~~~~~~~~i~~~Lr~~gi~v~ 353 (397)
T TIGR00442 293 PTPAV-GFAIGIERLLLLLEELG----------------LEPPEESSPDVYVVPLGE--EAELEALKLAQKLRKAGIRVE 353 (397)
T ss_pred CCceE-EeeecHHHHHHHHHhcC----------------CCCCCCCCCcEEEEEeCH--HHHHHHHHHHHHHHhCCCeEE
Confidence 46877 99999999998886532 124455789999999864 566789999999999999999
Q ss_pred EeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCC
Q 042110 173 IDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSK 212 (287)
Q Consensus 173 vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~ 212 (287)
++....++++++++|++.|+||+|+||+ +++|+||++.||
T Consensus 354 ~~~~~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 354 VDLGGRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred EeCCCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEeCCCC
Confidence 9998899999999999999999999997 899999999875
No 38
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.5e-12 Score=123.15 Aligned_cols=132 Identities=24% Similarity=0.354 Sum_probs=113.4
Q ss_pred CcEEeceEeecceehh-HHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecC--------ChhHHHHHHHH
Q 042110 90 QRVFTPSVIEPSSGID-RIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQ--------NQQYEEVAKVI 160 (287)
Q Consensus 90 ~~~~~P~VIe~S~GIe-Rii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~--------~~e~~~~A~~I 160 (287)
++...-.|..-|.|+. |.|..+..- |||+ .+|.|||.+||+||.|+|++- ...+...|..+
T Consensus 304 ~~g~~~fv~QnSWg~sTRtiGvmiM~--------HgDd--kGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v 373 (551)
T KOG4163|consen 304 GEGEKEFVWQNSWGLSTRTIGVMIMT--------HGDD--KGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAV 373 (551)
T ss_pred CccchhheeecccccccceeeEEEEE--------ecCC--cccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHH
Confidence 4445667888999997 888877654 3443 578999999999999999864 23567889999
Q ss_pred HHHHHHCCCeEEEeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 161 SESLSVAGISHKIDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 161 a~~LR~~Gi~v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
...|...|||++.|++ +.+.|.+|...+..|+|..|-||. ++.|++-.||+++...|++++|...|++++.
T Consensus 374 ~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe 449 (551)
T KOG4163|consen 374 ESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLE 449 (551)
T ss_pred HHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHH
Confidence 9999999999999998 679999999999999999999998 7899999999999999999999988877654
No 39
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.9e-10 Score=105.89 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=87.1
Q ss_pred ceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCC------CeEEEe
Q 042110 101 SSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAG------ISHKID 174 (287)
Q Consensus 101 S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~G------i~v~vD 174 (287)
++|+.|++.|.+|-.-+ ...|+||..+||++|++++..+ ......+.+++.+|-... =.+..|
T Consensus 300 GIGVtRllaAa~evls~----------~~~lrwP~~iAPy~vcli~pk~-~~~~q~~~ev~~el~~~~~~~~l~~~iLld 368 (457)
T KOG2324|consen 300 GIGVTRLLAAAAEVLSD----------DKGLRWPSLIAPYKVCLIGPKK-GSKSQRAQEVISELLNDEAVGNLHGEILLD 368 (457)
T ss_pred eccHHHHHHHHHHHhcc----------ccccccccccCcceeEEeccCC-cchhhhHHHHHHHhhcchhhhhhccceecc
Confidence 45677999999986422 1468999999999997665543 234456666666554321 234566
Q ss_pred CC-CCCHHHHHHHhHHcCCCEEEEEcC-----CCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 175 IT-GASIGKRYARTDELGVPCAITVDS-----TSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 175 ~s-~~SIGKr~k~AdeiGiPy~IiIG~-----~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
++ ..+||+|++.|+++|+||+|+||. +..+.|+-+.+|+...+..+.+.+.+.
T Consensus 369 dr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~~ 427 (457)
T KOG2324|consen 369 DREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLLS 427 (457)
T ss_pred chhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHhh
Confidence 65 579999999999999999999995 789999999999988888777766554
No 40
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8.4e-10 Score=110.54 Aligned_cols=148 Identities=16% Similarity=0.241 Sum_probs=118.4
Q ss_pred CeeEEeecceee-EeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEe
Q 042110 69 GKNVCIKKNMLL-ISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTL 147 (287)
Q Consensus 69 g~~~~i~~~~v~-~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl 147 (287)
|-.|+|.+-... .+-.-.+.+|+.....+.-.+.|++|++.+++|+..+. ..+.||..+||+++.|+++
T Consensus 345 ghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~----------~gi~w~~a~apf~~~iv~~ 414 (500)
T COG0442 345 GHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDE----------NGIIWPKAIAPFDVHIVPV 414 (500)
T ss_pred CEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhccc----------ccCccccccCcceeEEEEc
Confidence 345666553322 11222566888876666666778999999999986542 3688998889999999999
Q ss_pred cCC-hhHHHHHHHHHHHHHHCC-CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC---CCcEEEEECCCCCeeeEeHHHH
Q 042110 148 VQN-QQYEEVAKVISESLSVAG-ISHKIDITGASIGKRYARTDELGVPCAITVDS---TSSVTIRERDSKDQMRVHVDDV 222 (287)
Q Consensus 148 ~~~-~e~~~~A~~Ia~~LR~~G-i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~---~gtVTLRdrdt~~Q~~V~leel 222 (287)
... ......+.+++..|...| ..|.+|+++.+.|-+++.|+.+|+||.+++|+ .|.|.+|.|.+|+...++...+
T Consensus 415 n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~~~~g~~e~k~r~~ge~~~~~~~~l 494 (500)
T COG0442 415 NTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKRLAEGEVEVKCRKCGEKEAVTIEAL 494 (500)
T ss_pred CchhHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeecccccCCceeEEecCCCchhhccHHHH
Confidence 863 445566788899999999 99999999999999999999999999999995 8999999999999888888877
Q ss_pred HHHH
Q 042110 223 ASIV 226 (287)
Q Consensus 223 ~~~l 226 (287)
.+.+
T Consensus 495 ~~~~ 498 (500)
T COG0442 495 FARL 498 (500)
T ss_pred HHHh
Confidence 6654
No 41
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.9e-09 Score=103.97 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=101.2
Q ss_pred EeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEE
Q 042110 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHK 172 (287)
Q Consensus 93 ~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~ 172 (287)
.+|.| +.|+|++||+..| ++..... + ..+. -.-.+|+|...+. .+.....++.+.|+.+||..+
T Consensus 389 ~vPcv-G~S~GVeRiFsil-e~r~~~~----~------~~iR--~t~t~V~V~~~~k--~~l~eR~k~v~~Lw~agI~aE 452 (518)
T KOG1936|consen 389 KVPCV-GQSVGVERIFSIL-EQRAATV----A------TKIR--TTETQVYVAAAGK--NLLFERLKVVNALWDAGIKAE 452 (518)
T ss_pred cCCcc-ceeehHhHHHHHH-HHHHHhh----h------hccc--cCceEEEEEecCC--chHHHHHHHHHHHHhcCcchh
Confidence 58999 9999999998766 4433210 0 1111 1347899988776 357788899999999999999
Q ss_pred EeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 173 IDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 173 vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+-+. +.++-+|+.+|++.|||++|++|+ +|.|+||+..+++.+.++.++++..|+++.+
T Consensus 453 ~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~l~ 516 (518)
T KOG1936|consen 453 YLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDLLS 516 (518)
T ss_pred hhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHHhc
Confidence 7775 567999999999999999999998 9999999999999999999999999988765
No 42
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.2e-06 Score=88.21 Aligned_cols=138 Identities=22% Similarity=0.245 Sum_probs=104.2
Q ss_pred eEeecceehh-HHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCCh-----hHHHHHHHHHHHHHHCCC
Q 042110 96 SVIEPSSGID-RIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ-----QYEEVAKVISESLSVAGI 169 (287)
Q Consensus 96 ~VIe~S~GIe-Rii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~-----e~~~~A~~Ia~~LR~~Gi 169 (287)
.|..||+|+. |.+++++.- +||+ .++.+||.+||.||.++|..-.. ....++..+...|...++
T Consensus 251 ~v~t~s~~~s~r~~~~~i~i--------~GDn--~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~ 320 (500)
T COG0442 251 YVHTTSYGISTRIIGAAILI--------HGDN--EGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGI 320 (500)
T ss_pred EecccceEEEeeeeeEEEEE--------ecCC--CCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcce
Confidence 3445689985 887666543 3442 27789999999999999875421 256788999999999999
Q ss_pred eEEEeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCC--eeeEeHHHHHHH-HHHHhc-----CCCCh
Q 042110 170 SHKIDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKD--QMRVHVDDVASI-VKALTD-----GQRTW 236 (287)
Q Consensus 170 ~v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~--Q~~V~leel~~~-l~~l~~-----~~~~w 236 (287)
+++.|++ ....|.||..+.-+|+|.++-+|. +.++|+-+|++.+ ...+.....++. +..++. ...-|
T Consensus 321 ~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w 400 (500)
T COG0442 321 RVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIW 400 (500)
T ss_pred EEeccccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCcc
Confidence 9999954 689999999999999999999998 8999999999999 456666666665 444333 44556
Q ss_pred HHHhccC
Q 042110 237 EDVWANS 243 (287)
Q Consensus 237 ~~~~~~~ 243 (287)
....+-|
T Consensus 401 ~~a~apf 407 (500)
T COG0442 401 PKAIAPF 407 (500)
T ss_pred ccccCcc
Confidence 6444433
No 43
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.94 E-value=1.4e-05 Score=75.18 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=56.1
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecc-ee-hhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPS-SG-IDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S-~G-IeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+++.+.++++...+ .+.+|+..+|+||+.+ +| ++|+|++|+||. ++
T Consensus 224 kid~~~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~--------~g----- 290 (298)
T cd00771 224 KIDFHVKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHY--------AG----- 290 (298)
T ss_pred eEEEEEEeCCCCeeecceeEeeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhh--------CC-----
Confidence 88888876 699999999999888655 6778988999999997 57 899999999983 12
Q ss_pred ccCCCCCCC
Q 042110 131 FRFPPLVAP 139 (287)
Q Consensus 131 l~lP~~iAP 139 (287)
.||+|+||
T Consensus 291 -~~P~wlaP 298 (298)
T cd00771 291 -KFPLWLAP 298 (298)
T ss_pred -CCCCccCc
Confidence 79999998
No 44
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.76 E-value=0.00028 Score=66.21 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=82.1
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEE-eCCCCCHHHHHHHhHHcCCCEEEEEcC-C------C---cEEEE
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI-DITGASIGKRYARTDELGVPCAITVDS-T------S---SVTIR 207 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~v-D~s~~SIGKr~k~AdeiGiPy~IiIG~-~------g---tVTLR 207 (287)
-++|+|+.++.. -+.....+|++.|-++||++++ .+...|+--.+.+|...|++|+|+|=. . + .|.||
T Consensus 5 RCDVLV~S~~~~-~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 5 RCDVLVCSFGPS-SLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred cceEEEEeCChh-HHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 478999998863 4558899999999999999999 443569999999999999999999976 2 2 49999
Q ss_pred ECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 208 ERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 208 drdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
+..++.+..++.++|+++|.+.+..+.
T Consensus 84 ~l~~~~e~dv~~~eLv~~l~~ei~~r~ 110 (273)
T PF12745_consen 84 SLEKKKETDVDRDELVDWLQQEIRERN 110 (273)
T ss_pred ccCCCcccccCHHHHHHHHHHHHHhhh
Confidence 999999999999999999998886543
No 45
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.52 E-value=0.00054 Score=66.87 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=65.5
Q ss_pred EeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEE
Q 042110 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHK 172 (287)
Q Consensus 93 ~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~ 172 (287)
-.|.| +.|+|+|||+.+ .. . ....+.+++|++.++ +....|.++++.||+.|++|+
T Consensus 303 ~~pAv-Gfai~ldrl~~~---~~-~-----------------~~~~~~~~~v~~~~~--~~~~~a~~~~~~Lr~~G~~~~ 358 (391)
T PRK12292 303 ARPAT-GFSLDLDRLLEL---QL-E-----------------LPVEARKDLVIAPDS--EALAAALAAAQELRKKGEIVV 358 (391)
T ss_pred CCCCc-eEEeeHHHHHhh---cc-c-----------------cccccCCcEEEEeCc--ccHHHHHHHHHHHHHcCCEEE
Confidence 47888 999999999863 10 0 001245678887765 345679999999999999999
Q ss_pred EeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 173 IDITGASIGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 173 vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
++....++++++++|++.|+ +++ ++..++..
T Consensus 359 ~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~ 389 (391)
T PRK12292 359 LALPGRNFEDAREYARDRQI----VEA-DGEWQVEP 389 (391)
T ss_pred EecCCCChHHHHHHHhhcCe----eec-CCeEEEEe
Confidence 99988899999999999998 333 55555543
No 46
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.11 E-value=0.2 Score=49.23 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=49.4
Q ss_pred eceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEE
Q 042110 94 TPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~v 173 (287)
.|.| +.|+|+|||+.++ +. . + ++ ++++++.+.. ..+.++++.||+.|++|++
T Consensus 311 ~pAv-Gfai~lerL~~~l-~~----~--------------~---~~-~~~~~~~~~~----~~~~~~a~~LR~~G~~~~~ 362 (392)
T PRK12421 311 RPAT-GFSMDLKELLALQ-FL----E--------------E---EA-GAILAPWGDD----PDLLAAIAELRQQGERVVQ 362 (392)
T ss_pred CCCc-eEEeeHHHHHhhc-cc----c--------------c---CC-ceEEeecCCc----HHHHHHHHHHHhCCCEEEE
Confidence 6888 9999999998654 21 0 0 11 5677776542 3478899999999999999
Q ss_pred eCCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 174 DITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 174 D~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
+..+.. ..+ +.++.-.+.++.
T Consensus 363 ~~~~~~-----~~~-~~~~~~~~~~~~ 383 (392)
T PRK12421 363 LLPGDD-----GSS-EPGCDHRLVLQD 383 (392)
T ss_pred eCCCcc-----hhH-HhCCCeEEEEEC
Confidence 874411 112 446666666664
No 47
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=92.02 E-value=0.22 Score=47.05 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=19.8
Q ss_pred cEEeceEeecceehhHHHHHHHHh
Q 042110 91 RVFTPSVIEPSSGIDRIIYCLCEH 114 (287)
Q Consensus 91 ~~~~P~VIe~S~GIeRii~aLlE~ 114 (287)
+++.+.|.++++|++|+++||+|+
T Consensus 256 ~~~~~~~~~~~~~~~R~l~alle~ 279 (297)
T cd00770 256 KQYVHTLNGTALATPRTIVAILEN 279 (297)
T ss_pred eeeeeEecccchHHHHHHHHHHHh
Confidence 345555578899999999999999
No 48
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=91.28 E-value=0.25 Score=48.97 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=30.0
Q ss_pred EEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCc
Q 042110 92 VFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPI 140 (287)
Q Consensus 92 ~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~ 140 (287)
.+.+.+.++++|++|+|+||+|++... + +.+.||..++|+
T Consensus 378 ~~vh~ln~~~~ai~R~i~Aile~~~~~-----~----G~i~iP~~l~py 417 (418)
T TIGR00414 378 KYVHTLNGTALAIGRTIVAILENYQTE-----D----GSVEIPEVLRKY 417 (418)
T ss_pred EEEEeecCcchHHHHHHHHHHHHccCC-----C----CCEeCChhcccc
Confidence 445555699999999999999986542 1 235699999886
No 49
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=90.06 E-value=0.43 Score=42.35 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.7
Q ss_pred ecccCcEEeceEeecceehhHHHHHHH
Q 042110 86 KKEFQRVFTPSVIEPSSGIDRIIYCLC 112 (287)
Q Consensus 86 ~~~~~~~~~P~VIe~S~GIeRii~aLl 112 (287)
.+.++....|+++++++|+||++++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~eR~l~all 235 (235)
T cd00670 209 IDEDGGGRAHTGCGGAGGEERLVLALL 235 (235)
T ss_pred EccCCCceeeEEEeCccHHHHHHHHHC
Confidence 344577789999999999999999985
No 50
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=88.02 E-value=0.71 Score=45.96 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=33.3
Q ss_pred cCcEEeceEeecc-eehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCce
Q 042110 89 FQRVFTPSVIEPS-SGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIK 141 (287)
Q Consensus 89 ~~~~~~P~VIe~S-~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~k 141 (287)
+|+...+|.+..+ ++++|+|.||+|+.-. ++ +.+.||+.++|+-
T Consensus 372 ~~~~~~~htln~t~~a~~R~l~ailE~~q~-----~~----g~i~iP~~l~py~ 416 (425)
T PRK05431 372 DGKPELVHTLNGSGLAVGRTLVAILENYQQ-----AD----GSVTIPEVLRPYM 416 (425)
T ss_pred CCceeEEEEeCCchhhHHHHHHHHHHHCCC-----CC----CcEECChhhhccc
Confidence 5677889987554 8999999999998422 11 2378999999984
No 51
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=72.88 E-value=15 Score=29.76 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=52.1
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHCCCeEEEeCCCC----CH-------HHHHHHhHHcCCCEEEEEcCCCcEEEE
Q 042110 140 IKCTVFTLV-QNQQYEEVAKVISESLSVAGISHKIDITGA----SI-------GKRYARTDELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 140 ~kV~Ilpl~-~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~----SI-------GKr~k~AdeiGiPy~IiIG~~gtVTLR 207 (287)
..+.|+|++ +.+.+.++..++.+.|++.|+...+...+- .+ ++--...-+.|+|-+.+ ++.|-
T Consensus 5 v~~sviP~gt~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea~~~~g~~Rv~t-----~ikId 79 (100)
T COG0011 5 VELSVIPLGTGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEAVFEKGAPRVST-----VIKID 79 (100)
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHHHHhcCCceEEE-----EEEee
Confidence 468899998 445688999999999999999999887643 33 22223335567877766 23444
Q ss_pred ECCCCCeeeEeHHHHHHHHHH
Q 042110 208 ERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 208 drdt~~Q~~V~leel~~~l~~ 228 (287)
+|..+ ..++++-++.+.+
T Consensus 80 ~R~d~---~~t~e~Kv~~v~e 97 (100)
T COG0011 80 ERRDK---ELTMEEKVKSVEE 97 (100)
T ss_pred eecCc---cccHHHHHHHHHH
Confidence 44433 2345555444443
No 52
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=72.58 E-value=47 Score=26.43 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=48.0
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEEcCCCcEEEE
Q 042110 140 IKCTVFTLV-QNQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 140 ~kV~Ilpl~-~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiIG~~gtVTLR 207 (287)
.+++|+|++ ..++..++..++.+.|++.|+...+...+-. +++-....-+.|++-++++ +.|=
T Consensus 3 aeisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~-----ikid 77 (97)
T TIGR00106 3 AEVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTS-----IKID 77 (97)
T ss_pred EEEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEE-----EEEE
Confidence 368899998 4557788999999999999999998876533 2334455556788877664 4555
Q ss_pred ECCC
Q 042110 208 ERDS 211 (287)
Q Consensus 208 drdt 211 (287)
+|..
T Consensus 78 ~R~d 81 (97)
T TIGR00106 78 TRTD 81 (97)
T ss_pred ecCC
Confidence 5544
No 53
>PLN03194 putative disease resistance protein; Provisional
Probab=71.30 E-value=16 Score=32.69 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC----CCCHHHHHHHhHHcCCCEEEEE
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT----GASIGKRYARTDELGVPCAITV 198 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s----~~SIGKr~k~AdeiGiPy~IiI 198 (287)
.+++|+|---+. +.-..++..|++.|+++||+|.+|+. +.+|...+-+|-+ ...++|+|
T Consensus 25 ~~yDVFISFrG~-DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIe-eSri~IvV 87 (187)
T PLN03194 25 KPCDVFINHRGI-DTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR-NCKVGVAV 87 (187)
T ss_pred CCCcEEEeCCCc-cccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHH-hCeEEEEE
Confidence 468888844333 22346789999999999999999983 5567666666644 34444443
No 54
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.03 E-value=7.2 Score=36.66 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=61.0
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHH--H--HHhHHcCCCEEEEEcCCCcE--EEEEC----
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITG-ASIGKR--Y--ARTDELGVPCAITVDSTSSV--TIRER---- 209 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~-~SIGKr--~--k~AdeiGiPy~IiIG~~gtV--TLRdr---- 209 (287)
+++|++-..+++..+.+.+|.+.|++.|+.+.+.... ...+.. + ....+.++.++|++|.|||+ ++|..
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~~ 81 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDI 81 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHHhcCCCC
Confidence 4667655445567788999999999999999986421 111100 0 12233478899999997765 23211
Q ss_pred -----CCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 210 -----DSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 210 -----dt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
..|. -..+..+++.+.+.++.+|.-.++
T Consensus 82 pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~~~~ 117 (277)
T PRK03708 82 PILGINMGTLGFLTEVEPEETFFALSRLLEGDYFID 117 (277)
T ss_pred eEEEEeCCCCCccccCCHHHHHHHHHHHHcCCceEE
Confidence 1121 113456788888888888876554
No 55
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.06 E-value=12 Score=35.92 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=62.5
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHH------------H--HhHHcCCCEEEEEcCCCcE-
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITG-ASIGKRY------------A--RTDELGVPCAITVDSTSSV- 204 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~-~SIGKr~------------k--~AdeiGiPy~IiIG~~gtV- 204 (287)
+|.|++-..+++..+.+.+|+..|++.|+.+.++... ..++... . .....++.++|++|.|||+
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L 86 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL 86 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence 4888876555677788999999999999999987632 1122100 0 1111257899999997655
Q ss_pred -EEEEC----------CCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 205 -TIRER----------DSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 205 -TLRdr----------dt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
+.|.. ..|. -..+..+++.+.|.++++|.-.++
T Consensus 87 ~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~ 133 (306)
T PRK03372 87 RAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDYRVE 133 (306)
T ss_pred HHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCceEE
Confidence 11111 1222 223457889999999999877665
No 56
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=68.18 E-value=22 Score=32.84 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCC--CCHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 153 YEEVAKVISESLSVAGISHKIDITG--ASIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~--~SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
......++...|.+.|+.+.+.... +......+.+...++..+|++|-|||+
T Consensus 17 ~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 17 DNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 3456677888999999988775532 245544555555678899999987764
No 57
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=67.88 E-value=24 Score=30.71 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCCHHHHHHHhH-HcC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 167 AGISHKIDITGASIGKRYARTD-ELG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Ad-eiG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
..+.+..|. ++++.++|.-.. ..| .|..++||.+|+|.-..+....-.+ +.+++...|..
T Consensus 92 l~fpllsD~-~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~-~~~~ll~~l~~ 154 (187)
T TIGR03137 92 ITYPMLGDP-TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGR-DASELLRKIKA 154 (187)
T ss_pred cceeEEECC-ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHH
Confidence 345566665 688888887432 223 5999999999999888876543334 67888777653
No 58
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.59 E-value=14 Score=35.04 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=62.1
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC----H-----HHHH-HHhHH-cCCCEEEEEcCCCcE--E--
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS----I-----GKRY-ARTDE-LGVPCAITVDSTSSV--T-- 205 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S----I-----GKr~-k~Ade-iGiPy~IiIG~~gtV--T-- 205 (287)
+|.|++-..+++..+.+.+|.+.|.+.|+.+.++....+ + +... ...+. ..+-++|++|.|||+ +
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~aa~ 86 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLSVAR 86 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHHHHHH
Confidence 488887656667778899999999999999999853211 1 1000 00111 247899999996655 1
Q ss_pred -EEEC-------CCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 206 -IRER-------DSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 206 -LRdr-------dt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
+..+ ..|. -..++.+++.+.|.++++|.-.++
T Consensus 87 ~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~ 129 (296)
T PRK04539 87 EIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKYLAE 129 (296)
T ss_pred HhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCceEE
Confidence 1111 1222 234568899999999998876544
No 59
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=67.03 E-value=20 Score=31.64 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCCeEEEeCCCCCHHHHHHHh-HHcCC--CEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 167 AGISHKIDITGASIGKRYART-DELGV--PCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~A-deiGi--Py~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
..+.+..|. ++++.++|.-- +..|. |..++||.+|+|.-.......-.+ +.+++...|+.+
T Consensus 92 l~fpllsD~-~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~-~~~eil~~l~al 155 (187)
T PRK10382 92 IKYAMIGDP-TGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGR-DASDLLRKIKAA 155 (187)
T ss_pred CceeEEEcC-chHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHhh
Confidence 345666665 78999998853 33577 999999999998777665433223 788888877654
No 60
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.94 E-value=12 Score=35.43 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=62.4
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-HH---HHH-H-HhHHcCCCEEEEEcCCCcE--EEEE----
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-IG---KRY-A-RTDELGVPCAITVDSTSSV--TIRE---- 208 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-IG---Kr~-k-~AdeiGiPy~IiIG~~gtV--TLRd---- 208 (287)
+|.|++=..++...+.+.++.+.|++.|+.+.++....+ ++ ..+ . ..-..++.++|++|.|||+ +.+.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~ 85 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAARALARH 85 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHHHhcCC
Confidence 477776555556778899999999999999999763211 11 011 1 1112368899999996654 1111
Q ss_pred ------CCCCCe---eeEeHHHHHHHHHHHhcCCCChH
Q 042110 209 ------RDSKDQ---MRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 209 ------rdt~~Q---~~V~leel~~~l~~l~~~~~~w~ 237 (287)
-.+|.- ..+..+++.+.|.++++|.-.|+
T Consensus 86 ~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~~i~ 123 (295)
T PRK01231 86 NVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHYQEE 123 (295)
T ss_pred CCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCceEE
Confidence 112222 24567899999999999887665
No 61
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=64.46 E-value=33 Score=29.29 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=52.6
Q ss_pred CCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhH-------HcCCCEEEEEcCCCcEEEEEC
Q 042110 137 VAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTD-------ELGVPCAITVDSTSSVTIRER 209 (287)
Q Consensus 137 iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~Ad-------eiGiPy~IiIG~~gtVTLRdr 209 (287)
-||..|.+ |.+. ++......|.++..++||.|.+|. ..|=++++.+- ...-||.|.|..+|.|.++.-
T Consensus 63 ~a~~~v~~-~~G~--d~~~ip~~v~~~~d~~~ikv~~~~--~~l~~~i~~~~~~~~~~r~~~~~~~v~v~~~g~i~v~~~ 137 (141)
T PRK03975 63 NAPVRVTI-PAGT--DLFDIPKRIYKEADEAGIKVPYDT--PELINFIREAAPEAIRGREVKEDFTIYLTSDGDIYVREC 137 (141)
T ss_pred CCCeEEEe-cCCC--cHHHhHHHHHHHhhHcCCeeccCH--HHHHHHHHHhhhHhhcCCeeccceEEEEcCCCcEEEeec
Confidence 36776654 6665 588889999999999999999886 34545554442 366799999999999999876
Q ss_pred CC
Q 042110 210 DS 211 (287)
Q Consensus 210 dt 211 (287)
+.
T Consensus 138 ~~ 139 (141)
T PRK03975 138 DL 139 (141)
T ss_pred Cc
Confidence 53
No 62
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.04 E-value=15 Score=34.88 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=60.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-HHH------HHHHh---HHc--CCCEEEEEcCCCcE--EEE
Q 042110 142 CTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-IGK------RYART---DEL--GVPCAITVDSTSSV--TIR 207 (287)
Q Consensus 142 V~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-IGK------r~k~A---dei--GiPy~IiIG~~gtV--TLR 207 (287)
+.|++-..+++..+.+.+|...|++.|+.+.++..... ++- .+... +.+ ++.++|++|.|||+ +.|
T Consensus 3 igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~ 82 (292)
T PRK01911 3 IAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFLRTAT 82 (292)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHHHHHH
Confidence 56665545567778899999999999999999863211 110 00000 122 57899999997764 111
Q ss_pred ---EC-------CCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 208 ---ER-------DSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 208 ---dr-------dt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
.. ..|. -..+..+++.+.|.++++|.-.++
T Consensus 83 ~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~~i~ 125 (292)
T PRK01911 83 YVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYTIE 125 (292)
T ss_pred HhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCceEE
Confidence 11 1222 234567888899999999876554
No 63
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=63.07 E-value=3.2 Score=38.16 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.7
Q ss_pred cEEeceEeecceehhHHHHHHH
Q 042110 91 RVFTPSVIEPSSGIDRIIYCLC 112 (287)
Q Consensus 91 ~~~~P~VIe~S~GIeRii~aLl 112 (287)
.++.|+|+|+|.|++|..|+|+
T Consensus 233 ~~~~~~~~E~~g~~dR~~~dLl 254 (254)
T cd00774 233 KLYVPGWIEVSGGADRTDYDLL 254 (254)
T ss_pred eeeCCceEEEeeeechHHhhcC
Confidence 4779999999999999999874
No 64
>PRK11914 diacylglycerol kinase; Reviewed
Probab=61.95 E-value=22 Score=33.13 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=40.0
Q ss_pred ceEEEE--EecCChhHHHHHHHHHHHHHHCCCeEEEeCCC--CCHHHHHHHhHHcCCCEEEEEcCCCc
Q 042110 140 IKCTVF--TLVQNQQYEEVAKVISESLSVAGISHKIDITG--ASIGKRYARTDELGVPCAITVDSTSS 203 (287)
Q Consensus 140 ~kV~Il--pl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~--~SIGKr~k~AdeiGiPy~IiIG~~gt 203 (287)
-+++++ |.+.+........++.+.|++.|+.+.+-.+. .......+.+.+.++..+|++|-|||
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT 76 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV 76 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 445544 44433233455678888999999987654432 23334444566678888999998555
No 65
>PRK13190 putative peroxiredoxin; Provisional
Probab=61.77 E-value=25 Score=31.06 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=40.1
Q ss_pred CeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 169 ISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+.+..|. ++++.++|.-.+. ..+|..++||.+|.|.........- --++++++..|..+..
T Consensus 92 fPll~D~-~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~-gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 92 FPVIADI-DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAET-GRNIDEIIRITKALQV 155 (202)
T ss_pred EEEEECC-ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCC-CCCHHHHHHHHHHhhh
Confidence 5555665 6778777764221 2479999999999887655433322 2378999888876544
No 66
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=61.40 E-value=15 Score=30.29 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=31.0
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHC-CCeEEEeCC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVA-GISHKIDIT 176 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~-Gi~v~vD~s 176 (287)
+|+|+.-.+.+++...+..+++.||+. |+.|.+|.-
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~ 38 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQW 38 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHH
Confidence 577877766677889999999999999 999999973
No 67
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=60.66 E-value=27 Score=32.45 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCCCceEEEEEecCCh----------hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEE
Q 042110 136 LVAPIKCTVFTLVQNQ----------QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAIT 197 (287)
Q Consensus 136 ~iAP~kV~Ilpl~~~~----------e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~Ii 197 (287)
.+.|-+|+++|-...+ ........+.+.|+++||+|.+-- ..--.|++.|.+.|++++=+
T Consensus 81 ~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFi--DP~~~qi~~A~~~GAd~VEL 150 (237)
T TIGR00559 81 EIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFI--DADKDQISAAAEVGADRIEI 150 (237)
T ss_pred HcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCcCEEEE
Confidence 3468899999964321 234667888999999999997554 23378999999999997743
No 68
>PRK13191 putative peroxiredoxin; Provisional
Probab=60.35 E-value=35 Score=30.70 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH----cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTDE----LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade----iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
.+.+..|. ++.+.++|.-.+. ...|..++||.+|.|...........+ ++++++..|+.+
T Consensus 97 ~fPllsD~-~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr-~~~eilr~l~al 160 (215)
T PRK13191 97 PFPIIADP-MGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGR-NIDEILRAIRAL 160 (215)
T ss_pred ceEEEECC-chHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCC-CHHHHHHHHHHh
Confidence 35665665 6788888875432 236889999999988877665544444 899999888765
No 69
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=60.20 E-value=28 Score=32.29 Aligned_cols=60 Identities=23% Similarity=0.186 Sum_probs=44.9
Q ss_pred CCCCceEEEEEecCCh----------hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEE
Q 042110 136 LVAPIKCTVFTLVQNQ----------QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAIT 197 (287)
Q Consensus 136 ~iAP~kV~Ilpl~~~~----------e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~Ii 197 (287)
.+.|-+|+++|-...+ ........+.+.|++.||+|.+-- ..--.|+..|.+.|++++=+
T Consensus 81 ~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFi--DPd~~qi~~A~~~GAd~VEL 150 (234)
T cd00003 81 EVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFI--DPDPEQIEAAKEVGADRVEL 150 (234)
T ss_pred HCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCcCEEEE
Confidence 3467899999964321 234677888999999999997544 23378999999999998743
No 70
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.11 E-value=18 Score=34.37 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=60.4
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHH---H-H-HhHHcCCCEEEEEcCCCcE--EEEEC---
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA-SIGKR---Y-A-RTDELGVPCAITVDSTSSV--TIRER--- 209 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~-SIGKr---~-k-~AdeiGiPy~IiIG~~gtV--TLRdr--- 209 (287)
.|.|++-..+++..+.+.+|++.|.+.|+.+.++.... .++.. . . .....++.++|++|.|||+ +.|..
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~aa~~~~~~ 86 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLGAARVLARY 86 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHHHHHHHhcCC
Confidence 37777665566777889999999999999999987421 11100 0 0 1111257899999986654 22211
Q ss_pred -------CCCC---eeeEeHHHHHHHHHHHhcCCCC
Q 042110 210 -------DSKD---QMRVHVDDVASIVKALTDGQRT 235 (287)
Q Consensus 210 -------dt~~---Q~~V~leel~~~l~~l~~~~~~ 235 (287)
.+|. -..+..+++.+.+.++++|.-.
T Consensus 87 ~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~~ 122 (292)
T PRK03378 87 DIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHYI 122 (292)
T ss_pred CCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCce
Confidence 1222 2345578888899998887653
No 71
>PF14601 TFX_C: DNA_binding protein, TFX, C-term; PDB: 1NR3_A.
Probab=59.84 E-value=20 Score=28.07 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=40.4
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhH-------HcCCCEEEEEcCCCcEEEE
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTD-------ELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~Ad-------eiGiPy~IiIG~~gtVTLR 207 (287)
||+.|.| +-+. ++......|.++..+.||.|.+|. ..|=++++.+. ...-+|.|.|..+|.+.+|
T Consensus 13 Apv~i~i-~~Gt--Dl~diP~~if~~aDe~gIKV~y~t--~~li~~i~~~a~~~i~~R~v~~~~~I~i~~dG~l~V~ 84 (84)
T PF14601_consen 13 APVRITI-PAGT--DLFDIPEIIFKEADEAGIKVRYDT--PELINFIREAAPDAIRGRVVKEDFEIYITEDGELRVR 84 (84)
T ss_dssp --EEEEE---GG--GHHHHHHHHHHHHHHHS-S----H--HHHHHHHHHH-SSS-----SSS-EEEEESSSSSEEE-
T ss_pred CCEEEEE-cCCC--cHHHhHHHHHHHHhHcCCeeccCH--HHHHHHHHHhchhhhcCCeecccEEEEEcCCCcEEeC
Confidence 7787766 4444 688899999999999999999886 44555555543 3557899999989988875
No 72
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=59.72 E-value=32 Score=32.22 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=42.8
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTDELG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
.+.+..|. ++.+.+.|.-.+..| .|..++||.+|+|.-.........+ +++++...|+.+
T Consensus 163 ~fPlLsD~-~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr-~v~eiLr~l~al 224 (261)
T PTZ00137 163 KFPLFSDI-SREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR-SVDETLRLFDAV 224 (261)
T ss_pred ceEEEEcC-ChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC-CHHHHHHHHHHh
Confidence 35566665 677888877544344 6999999999999887765444334 899998888654
No 73
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.71 E-value=15 Score=37.98 Aligned_cols=100 Identities=14% Similarity=0.241 Sum_probs=65.6
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHH-----hHHcCCCEEEEEcCCCcE--E---E
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITG-ASIGKRYAR-----TDELGVPCAITVDSTSSV--T---I 206 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~-~SIGKr~k~-----AdeiGiPy~IiIG~~gtV--T---L 206 (287)
.|-++.|++-..+++..+.+.+|.+.|++.|+.+.++... ..++.+... .+...+-++|++|.|||+ + +
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~~ 368 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVLRASKLV 368 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHHHHHHHh
Confidence 4678999876555677788999999999999999997632 222221100 112257899999996655 1 1
Q ss_pred EEC-------CCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 207 RER-------DSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 207 Rdr-------dt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
... ..|. -..+..+++.+.|.++++|.-.++
T Consensus 369 ~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~ 409 (569)
T PRK14076 369 NGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEYEIE 409 (569)
T ss_pred cCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCceEE
Confidence 111 1222 134567899999999999876554
No 74
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=58.55 E-value=33 Score=31.87 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=38.0
Q ss_pred CCceEEEEEecCC----------hhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEE
Q 042110 138 APIKCTVFTLVQN----------QQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCA 195 (287)
Q Consensus 138 AP~kV~Ilpl~~~----------~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~ 195 (287)
.|-+|+++|-... .........+.+.|++.||+|.+-- ..--.|++.|-+.|++++
T Consensus 84 kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFi--DP~~~qi~~A~~~Gad~V 149 (239)
T PF03740_consen 84 KPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFI--DPDPEQIEAAKELGADRV 149 (239)
T ss_dssp --SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHHTT-SEE
T ss_pred CcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEe--CCCHHHHHHHHHcCCCEE
Confidence 4678999996431 1345778899999999999997544 234789999999999976
No 75
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=57.80 E-value=39 Score=28.41 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCCC---CHHHHHHHhHHcCCCEEEEEcC
Q 042110 152 QYEEVAKVISESLSVAGISHKIDITGA---SIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~Gi~v~vD~s~~---SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
-....|..|.+.|++.|+.|.+.-.+. ++..|.+.|+..++-++|-|-.
T Consensus 25 ~~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~ 76 (175)
T PF01520_consen 25 INLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHF 76 (175)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEee
Confidence 345789999999999999988866543 7999999999999999998876
No 76
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.49 E-value=25 Score=33.46 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=40.4
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-HHH-HHHHhHHcCCCEEEEEcCCCcE
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-IGK-RYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-IGK-r~k~AdeiGiPy~IiIG~~gtV 204 (287)
++.+++=..++...+.+.++.+.|++.|+.+.++..... .+. .+......++.++|++|.|||+
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTV 70 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHH
Confidence 356654334445667788999999999999888663211 111 1112223468899999986654
No 77
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=57.48 E-value=21 Score=33.79 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=60.9
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCC-CHHH-H---HH-HhHHcCCCEEEEEcCCCcE--EEEECC--
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA-SIGK-R---YA-RTDELGVPCAITVDSTSSV--TIRERD-- 210 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~-SIGK-r---~k-~AdeiGiPy~IiIG~~gtV--TLRdrd-- 210 (287)
+|.|++-..+++..+.+..+++.|++.|+.+.++.... ..+. . +. ..-..++-++|++|.|||+ ++|...
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~ 86 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLGIGRQLAPY 86 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHHHHHHhcCC
Confidence 47887665556677889999999999999988875321 1110 0 01 1112367899999986544 222211
Q ss_pred --------CC---CeeeEeHHHHHHHHHHHhcCCCChH
Q 042110 211 --------SK---DQMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 211 --------t~---~Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
.| =-..++.+++.+.|.++++|.-.++
T Consensus 87 ~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~ 124 (291)
T PRK02155 87 GVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYEEE 124 (291)
T ss_pred CCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCceEE
Confidence 11 1224567889999999988876554
No 78
>PRK13055 putative lipid kinase; Reviewed
Probab=57.36 E-value=40 Score=32.15 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCC---CCHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 153 YEEVAKVISESLSVAGISHKIDITG---ASIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~---~SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
......++...|++.|+.+.+.... .......+.+...++..+|++|-|||+
T Consensus 18 ~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 18 MKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 3455678889999999987765432 234444556667788999999986654
No 79
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=55.81 E-value=36 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCCCceEEEEEecCCh----------hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEE
Q 042110 136 LVAPIKCTVFTLVQNQ----------QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAIT 197 (287)
Q Consensus 136 ~iAP~kV~Ilpl~~~~----------e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~Ii 197 (287)
.+.|-+|+++|-...+ ........+.+.|++.||+|.+-- ..--.|+..|.+.|++++=+
T Consensus 84 ~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFi--dP~~~qi~~A~~~GAd~VEL 153 (239)
T PRK05265 84 EVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFI--DPDPEQIEAAAEVGADRIEL 153 (239)
T ss_pred HCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCcCEEEE
Confidence 3467899999964321 234677888999999999887544 24568999999999997743
No 80
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=55.48 E-value=40 Score=29.76 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=48.6
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHH-HCCCeEEEeCCCCCHHHHHHHhHHc-CC----CEEEEEcCCCcEEEEECCCCC
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLS-VAGISHKIDITGASIGKRYARTDEL-GV----PCAITVDSTSSVTIRERDSKD 213 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR-~~Gi~v~vD~s~~SIGKr~k~Adei-Gi----Py~IiIG~~gtVTLRdrdt~~ 213 (287)
+++..+..+....+......+.+... ...+.+..|. ++.+.+.|.-.+.. |. |..++||.+|.|.........
T Consensus 60 v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~-~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~ 138 (203)
T cd03016 60 VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADP-DREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPAT 138 (203)
T ss_pred CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECc-hHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCC
Confidence 45555554432223333344443322 2334555554 67788887643221 33 458999999988777654322
Q ss_pred eeeEeHHHHHHHHHHH
Q 042110 214 QMRVHVDDVASIVKAL 229 (287)
Q Consensus 214 Q~~V~leel~~~l~~l 229 (287)
- ..+++++...|+.+
T Consensus 139 ~-gr~~~ell~~l~~l 153 (203)
T cd03016 139 T-GRNFDEILRVVDAL 153 (203)
T ss_pred C-CCCHHHHHHHHHHH
Confidence 1 22688888877664
No 81
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=55.30 E-value=67 Score=27.20 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=41.0
Q ss_pred CCCeEEEeCCCCCHHHHHHHh-HH--cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 167 AGISHKIDITGASIGKRYART-DE--LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~A-de--iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
..+.+..|. ++.+.++|.-. +. ...|..++||.+|+|.-+.+....-. -+.+++.+.|+.+
T Consensus 93 ~~f~~l~D~-~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~-~~~~~il~~l~~~ 156 (173)
T cd03015 93 INFPLLADP-KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVG-RSVDETLRVLDAL 156 (173)
T ss_pred cceeEEECC-chhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCC-CCHHHHHHHHHHh
Confidence 346666765 67788887632 22 35789999999999888887553322 2567777777653
No 82
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=55.14 E-value=47 Score=28.26 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=39.0
Q ss_pred CeEEEeCCCCCHHHHHHHhHH----c--CCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 169 ISHKIDITGASIGKRYARTDE----L--GVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~Ade----i--GiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
+.+..|..++++++.|.-... . ..|-.++||.+|.|.-+.+.......-+++++++.|+
T Consensus 102 ~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 102 VITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred ceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 345555456688888874311 1 1237889999999988887555455566888877664
No 83
>PRK13337 putative lipid kinase; Reviewed
Probab=53.70 E-value=58 Score=30.44 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCC--CCCHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 154 EEVAKVISESLSVAGISHKIDIT--GASIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 154 ~~~A~~Ia~~LR~~Gi~v~vD~s--~~SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
.....++...|++.|+.+.+-.. .+......+++...|...+|++|.|||+
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 34556788889999998765432 3445555666667788899999986654
No 84
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=53.42 E-value=36 Score=26.73 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=50.0
Q ss_pred eEEEEEecC-ChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 141 KCTVFTLVQ-NQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 141 kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
.+.|+|++. .++..++..++.+.|++.|+...+...+-. +++-.+.+-+.|++-+++. +.|-+
T Consensus 2 ei~v~P~g~~~~s~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t~-----ikId~ 76 (92)
T PF01910_consen 2 EISVIPIGTGGESVSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVTV-----IKIDD 76 (92)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEE-----EEEEE
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEEE-----EEEEE
Confidence 578999975 457889999999999999999999876422 3455555666788877664 56666
Q ss_pred CCCCC
Q 042110 209 RDSKD 213 (287)
Q Consensus 209 rdt~~ 213 (287)
|..+.
T Consensus 77 R~d~~ 81 (92)
T PF01910_consen 77 RRDKE 81 (92)
T ss_dssp ESSST
T ss_pred cCCCC
Confidence 65543
No 85
>PRK13599 putative peroxiredoxin; Provisional
Probab=53.20 E-value=55 Score=29.44 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH----cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTDE----LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade----iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
.+.+..|. ++++.++|.-.+. ..+|..++||.+|+|.........-.+ +++++...|+.+
T Consensus 92 ~fPil~D~-~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr-~~~eilr~l~~l 155 (215)
T PRK13599 92 PFPVIADD-LGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGR-NVDEILRALKAL 155 (215)
T ss_pred ceeEEECC-CchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCC-CHHHHHHHHHHh
Confidence 45666665 6788888864321 257999999999988777543322223 788988888765
No 86
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=52.57 E-value=47 Score=26.80 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHh-HHcC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHH
Q 042110 158 KVISESLSVAGISHKIDITGASIGKRYART-DELG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVA 223 (287)
Q Consensus 158 ~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~A-deiG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~ 223 (287)
.+..+.+...++.+..|...++++++|.-. ++.| .|..++||.+|+|.-+.+.......-.+++++
T Consensus 73 ~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 73 KRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 444444433356766665347888888743 2233 57899999999998888866544444555543
No 87
>PRK13059 putative lipid kinase; Reviewed
Probab=52.35 E-value=69 Score=29.87 Aligned_cols=50 Identities=8% Similarity=-0.045 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEe-CC-CCCHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 154 EEVAKVISESLSVAGISHKID-IT-GASIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 154 ~~~A~~Ia~~LR~~Gi~v~vD-~s-~~SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
.....++...|++.|+.+.+- .. .... ...+++...+...+|++|-|||+
T Consensus 18 ~~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 18 ISELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHH
Confidence 345677889999999886642 22 2233 33445556788899999986654
No 88
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.14 E-value=27 Score=33.09 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=58.5
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-HHHH-HHHhH-HcCCCEEEEEcCCCcE--E---EEEC---
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-IGKR-YARTD-ELGVPCAITVDSTSSV--T---IRER--- 209 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-IGKr-~k~Ad-eiGiPy~IiIG~~gtV--T---LRdr--- 209 (287)
++.|++=..+ +..+.+.+|.+.|.+.|+.+.++....+ ++.. +...+ ...+.++|++|.|||+ + ....
T Consensus 12 ~i~ii~~~~~-~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~P 90 (287)
T PRK14077 12 KIGLVTRPNV-SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLISLCRKAAEYDKF 90 (287)
T ss_pred EEEEEeCCcH-HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHHHHHHHhcCCCCc
Confidence 4888765443 6778889999999999999999874211 1100 11011 1257899999997764 1 1111
Q ss_pred ----CCCC---eeeEeHHHHHHHHHHHhcCCCC
Q 042110 210 ----DSKD---QMRVHVDDVASIVKALTDGQRT 235 (287)
Q Consensus 210 ----dt~~---Q~~V~leel~~~l~~l~~~~~~ 235 (287)
..|. -..++.+++.+.|.++++|.-.
T Consensus 91 ilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~ 123 (287)
T PRK14077 91 VLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFE 123 (287)
T ss_pred EEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCe
Confidence 1222 2245678888889988887653
No 89
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.76 E-value=28 Score=33.32 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=60.2
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHH---------------HHHhHHcCCCEEEEEcCCCcE
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA-SIGKR---------------YARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~-SIGKr---------------~k~AdeiGiPy~IiIG~~gtV 204 (287)
++.|++-..+++..+.+.+|.+.|.+.|+.+.++.... .++.. .... ...+-++|++|.|||+
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDGTl 81 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGGDGTV 81 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc-ccCcCEEEEEeCcHHH
Confidence 36666554455677889999999999999999976321 11100 0111 1247899999986654
Q ss_pred --EEEE---C-------CCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 205 --TIRE---R-------DSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 205 --TLRd---r-------dt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
+.|. . ..|. -..+..+++.+.|.++++|.-.++
T Consensus 82 L~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y~ie 129 (305)
T PRK02649 82 LSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQYTIE 129 (305)
T ss_pred HHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCcEEE
Confidence 1111 1 1222 223467899999999999876554
No 90
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=50.58 E-value=1e+02 Score=25.91 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCe----eeEeHHHHHHHHHHHhcCCC
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQ----MRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q----~~V~leel~~~l~~l~~~~~ 234 (287)
.+.+..|. ++.+.+.|. -.++|..++||.+|.|.-+...+... .....+++.+.|+.++.+..
T Consensus 90 ~~~~l~D~-~~~~~~~~~---v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 90 PFPYLLDE-TQEVAKAYG---AACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred CceEEECC-chHHHHHcC---CCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 35566654 555665554 35789999999988887665433211 24567889999999888754
No 91
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.32 E-value=22 Score=33.41 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=60.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHHHHHhHHcCCCEEEEEcCCCcE--EEEECC-------C
Q 042110 142 CTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA-SIGKRYARTDELGVPCAITVDSTSSV--TIRERD-------S 211 (287)
Q Consensus 142 V~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~-SIGKr~k~AdeiGiPy~IiIG~~gtV--TLRdrd-------t 211 (287)
+.|++-..+++..+.+.++.+.| +.|+.+.++.... .++..-..-+..++.++|++|.|||+ +.|... .
T Consensus 3 i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~~PilGIN~ 81 (271)
T PRK01185 3 VAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRAKGPILGINM 81 (271)
T ss_pred EEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHcCCCEEEEEC
Confidence 66665545556778888999888 5799999876321 11100000123368899999997665 333222 1
Q ss_pred C---CeeeEeHHHHHHHHHHHhcCCCChHH
Q 042110 212 K---DQMRVHVDDVASIVKALTDGQRTWED 238 (287)
Q Consensus 212 ~---~Q~~V~leel~~~l~~l~~~~~~w~~ 238 (287)
| =-..++.+++.+.|.++++|.-.|++
T Consensus 82 G~lGFL~~~~~~~~~~~l~~i~~g~~~i~~ 111 (271)
T PRK01185 82 GGLGFLTEIEIDEVGSAIKKLIRGEYFIDE 111 (271)
T ss_pred CCCccCcccCHHHHHHHHHHHHcCCcEEEE
Confidence 2 12245678999999999998776653
No 92
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=50.06 E-value=37 Score=34.94 Aligned_cols=100 Identities=11% Similarity=0.073 Sum_probs=62.8
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHH-HCCCeEEEeCCCC-CHH------HHH------HHhHH--cCCCEEEEEcCC
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLS-VAGISHKIDITGA-SIG------KRY------ARTDE--LGVPCAITVDST 201 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR-~~Gi~v~vD~s~~-SIG------Kr~------k~Ade--iGiPy~IiIG~~ 201 (287)
.|-.|.|++-..+++..+.+.+|..-|+ ..|+.+.++.... .+. ... ..... .++-++|+||.|
T Consensus 193 ~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGD 272 (508)
T PLN02935 193 DPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGD 272 (508)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCc
Confidence 3667888876566677788999999998 5899999976321 110 000 01011 257899999985
Q ss_pred CcE--EEE----------ECCCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 202 SSV--TIR----------ERDSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 202 gtV--TLR----------drdt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
||+ +.| --..|. -..+..+++.+.|.++++|.-.++
T Consensus 273 GTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y~Ie 323 (508)
T PLN02935 273 GTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPISIT 323 (508)
T ss_pred HHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCceEE
Confidence 543 111 111232 234567889999999999876655
No 93
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.95 E-value=35 Score=31.57 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcE--EEEEC-------CCCC---eeeEe
Q 042110 151 QQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSV--TIRER-------DSKD---QMRVH 218 (287)
Q Consensus 151 ~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtV--TLRdr-------dt~~---Q~~V~ 218 (287)
++....+.++.+.|.+.|+.+.++.... .....+.++|++|.|||+ ++|.. ..|. -..+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~lGfl~~~~ 80 (256)
T PRK14075 9 EEKEKEAKFLKEKISKEHEVVEFCEASA--------SGKVTADLIIVVGGDGTVLKAAKKVGTPLVGFKAGRLGFLSSYT 80 (256)
T ss_pred ccHHHHHHHHHHHHHHcCCeeEeecccc--------cccCCCCEEEEECCcHHHHHHHHHcCCCEEEEeCCCCccccccC
Confidence 4577889999999999999988876433 112467899999987665 12111 1222 23456
Q ss_pred HHHHHHHHHHHhcCCCChH
Q 042110 219 VDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 219 leel~~~l~~l~~~~~~w~ 237 (287)
.+++.+.+.++.+|.-.++
T Consensus 81 ~~~~~~~l~~~~~g~~~~~ 99 (256)
T PRK14075 81 LEEIDRFLEDLKNWNFREE 99 (256)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 7888889999988876554
No 94
>PRK13189 peroxiredoxin; Provisional
Probab=48.46 E-value=82 Score=28.39 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=36.9
Q ss_pred CeEEEeCCCCCHHHHHHHhHH----cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 169 ISHKIDITGASIGKRYARTDE----LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~Ade----iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
+.+..|. ++.+.++|.-.+. ..+|..++||.+|.|.-.-.....-.+ +++++...|+.+
T Consensus 100 fPllsD~-~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr-~~~eilr~l~al 162 (222)
T PRK13189 100 FPIIADD-RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGR-NMDEILRLVKAL 162 (222)
T ss_pred eeEEEcC-ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCC-CHHHHHHHHHHh
Confidence 4444554 6788888875422 247889999998887544332221111 578888877665
No 95
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=47.26 E-value=19 Score=34.15 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=31.4
Q ss_pred eEEeecceeeEeeee--ecccCcEEeceEeecceehhHHHHHHHH
Q 042110 71 NVCIKKNMLLISKEK--KKEFQRVFTPSVIEPSSGIDRIIYCLCE 113 (287)
Q Consensus 71 ~~~i~~~~v~~~~~~--~~~~~~~~~P~VIe~S~GIeRii~aLlE 113 (287)
.+++-=+-+.+.+-+ ..+.|-.-.|..+|..||+|||.+.|..
T Consensus 126 GWEVWldGMEITQFTYFQQvGGi~~~pv~~EITYGLERiaMylQ~ 170 (293)
T TIGR00388 126 GWEVWLDGMEVTQFTYFQQVGGLECKPVSVEITYGLERLAMYIQG 170 (293)
T ss_pred ccEEEECCeeeeeeeeeeeeCCeeccccceeeehhHHHHHHHHhC
Confidence 455444444555554 5567888899999999999999988854
No 96
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=47.05 E-value=86 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHCCCeEEEeCCC---CCHHHHHHHhHHcCCCEEEEEcC
Q 042110 151 QQYEEVAKVISESLSVAGISHKIDITG---ASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 151 ~e~~~~A~~Ia~~LR~~Gi~v~vD~s~---~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
+.....+..+...|++.|+.|.+.-.+ .++..|.+.|+..+.-++|-+-.
T Consensus 25 ~~~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~ 77 (172)
T cd02696 25 DINLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHA 77 (172)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEee
Confidence 345578899999999999999776543 58999999999999999998875
No 97
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.00 E-value=35 Score=31.93 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=52.4
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcE--EEEEC---------
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSV--TIRER--------- 209 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtV--TLRdr--------- 209 (287)
++.|++-..+ +..+.+.++.+.|++.|+.+.++. ..+.++|++|.|||+ +.|..
T Consensus 4 ~i~iv~~~~~-~a~~~~~~l~~~l~~~g~~~~~~~--------------~~~D~vi~lGGDGT~L~a~~~~~~~~~~pil 68 (264)
T PRK03501 4 NLFFFYKRDK-ELVEKVKPLKKIAEEYGFTVVDHP--------------KNANIIVSIGGDGTFLQAVRKTGFREDCLYA 68 (264)
T ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHCCCEEEcCC--------------CCccEEEEECCcHHHHHHHHHhcccCCCeEE
Confidence 4666654443 566778888889999999888652 135688888875544 22221
Q ss_pred --CC-CC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 210 --DS-KD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 210 --dt-~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
.. |. -..+..+++.+.+.++++|+...+
T Consensus 69 gIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~ 102 (264)
T PRK03501 69 GISTKDQLGFYCDFHIDDLDKMIQAITKEEIEVR 102 (264)
T ss_pred eEecCCCCeEcccCCHHHHHHHHHHHHcCCcEEE
Confidence 11 21 112356888899999888875443
No 98
>PRK15000 peroxidase; Provisional
Probab=46.66 E-value=85 Score=27.78 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=41.6
Q ss_pred CeEEEeCCCCCHHHHHHHhH-H--cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 169 ISHKIDITGASIGKRYARTD-E--LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~Ad-e--iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
+.+..|. ++++.+.|.--+ + .+.|..++||.+|.|.-.......-.+ ++++++..|+.+
T Consensus 100 fpllsD~-~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr-~~~eilr~l~al 161 (200)
T PRK15000 100 YAMVADV-KREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR-NIDEMLRMVDAL 161 (200)
T ss_pred ceEEECC-CcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC-CHHHHHHHHHHh
Confidence 4555555 678888887432 1 258999999999988877665443334 788888888654
No 99
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=46.34 E-value=43 Score=26.14 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCceEEEEEecCChh----HHHHHHHHHHHHHHCCCeEEEeCCCC------CHHHHHHHhHHcCCCEEEEEc
Q 042110 138 APIKCTVFTLVQNQQ----YEEVAKVISESLSVAGISHKIDITGA------SIGKRYARTDELGVPCAITVD 199 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e----~~~~A~~Ia~~LR~~Gi~v~vD~s~~------SIGKr~k~AdeiGiPy~IiIG 199 (287)
.++.++|.|+..... ....+.-|.+.|...|+-.-+|...- .-.-.|..+..+|+.|+|+-.
T Consensus 11 ~~~pIaV~~f~~~~~~~~~~~~i~~vi~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~~~w~~~gad~lv~G~ 82 (105)
T PF04052_consen 11 QKIPIAVPPFQGDGGDAELGEDIAEVISNDLKRSGLFRVIDPSSFPQDPSSPSQVNFSDWRSLGADYLVTGS 82 (105)
T ss_dssp GSEEEEE---EESSSS-S-SS-HHHHHHHHHHHTTSEEE--GGG-S---SSGGG--HHHHHTTT-SEEEEEE
T ss_pred ccCCEEEecCCCCCcccchhHHHHHHHHHHHHhCCCceEcCchhcccCCCccCCcCHHHHHHcCCCEEEEEE
Confidence 567799998864321 34677888999999999777776432 345588889999999987654
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=46.18 E-value=90 Score=25.16 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=43.2
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHh------HHcCCCEEEEEcCCCcEEEEECCCCC
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYART------DELGVPCAITVDSTSSVTIRERDSKD 213 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~A------deiGiPy~IiIG~~gtVTLRdrdt~~ 213 (287)
+++..+...+++. +.+..+. ....+.+..|. +..+.++|.-. .-.++|..++||.+|.|.-+......
T Consensus 63 v~~v~v~~~~~~~----~~~~~~~-~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 63 VDVVGVSSDDDPP----VREFLKK-YGINFPVLSDP-DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CEEEEEEESSSHH----HHHHHHH-TTTTSEEEEET-TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred eEEEEecccCCHH----HHHHHHh-hCCCceEEech-HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 5666665554322 3333333 33457777774 77888888732 11389999999999988777665443
No 101
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=45.06 E-value=32 Score=29.30 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=29.2
Q ss_pred HHHHHHHCCCeE----EEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 160 ISESLSVAGISH----KIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 160 Ia~~LR~~Gi~v----~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
+.+.+.+.|+.. ..|..+..++++|. -.|+|..++||.+|.|.-|+
T Consensus 80 ~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~---v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFS---VEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred HHHHHHHCCCCceeecccchHHHHHHHHcC---CCCCCEEEEECCCCcEEeeC
Confidence 445566777552 12221235666654 46999999999988887553
No 102
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=44.86 E-value=84 Score=29.18 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHCCCeEEEeCC--CCCHHHHHHHhHHcCCCEEEEEcCCCc
Q 042110 155 EVAKVISESLSVAGISHKIDIT--GASIGKRYARTDELGVPCAITVDSTSS 203 (287)
Q Consensus 155 ~~A~~Ia~~LR~~Gi~v~vD~s--~~SIGKr~k~AdeiGiPy~IiIG~~gt 203 (287)
....++.+.|++.|+.+.+-.. .+......+++.+.|...+|++|-|||
T Consensus 14 ~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 14 EDVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGT 64 (293)
T ss_pred hHHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChH
Confidence 3456777789999998765543 344555555566788889999998654
No 103
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=42.81 E-value=1.3e+02 Score=23.79 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHHHHH-HHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEc---------C-------C--CcEEEEECCCCCeeeE
Q 042110 157 AKVISES-LSVAGISHKIDITGASIGKRYARTDELGVPCAITVD---------S-------T--SSVTIRERDSKDQMRV 217 (287)
Q Consensus 157 A~~Ia~~-LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG---------~-------~--gtVTLRdrdt~~Q~~V 217 (287)
...|.+. ++..|+.+..-. . +.. +++.-..|.|.++.++ . + +.+.+.|-.++....+
T Consensus 46 ~~~l~~~~a~~~G~~~~~~~-~-~~~--~~~~l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~~~~~~~i~DP~~~~~~~~ 121 (141)
T cd02549 46 PKPIVSAAARKYGLVVRPLT-G-LLA--LLRQLAAGHPVIVSVNLGVSITPSGHAMVVIGYDRKGNVYVNDPGGGRRLVV 121 (141)
T ss_pred HHHHHHHHHhhCCCcEEECC-C-HHH--HHHHHHCCCeEEEEEecCcccCCCCeEEEEEEEcCCCCEEEECCCCCcCEEE
Confidence 3456666 888999887643 2 111 6666677999888774 1 3 6788888887777788
Q ss_pred eHHHHHHHH
Q 042110 218 HVDDVASIV 226 (287)
Q Consensus 218 ~leel~~~l 226 (287)
+.+++.+.-
T Consensus 122 ~~~~f~~~w 130 (141)
T cd02549 122 SFDEFEKAW 130 (141)
T ss_pred eHHHHHHHH
Confidence 988886543
No 104
>PRK13054 lipid kinase; Reviewed
Probab=40.67 E-value=1.3e+02 Score=27.96 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCC--CCCHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 154 EEVAKVISESLSVAGISHKIDIT--GASIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 154 ~~~A~~Ia~~LR~~Gi~v~vD~s--~~SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
.....++...|++.|+.+.+-.+ .+..-...+++...|+..+|++|-|||+
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 34566677889999988765443 2445555556667788899999886553
No 105
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.35 E-value=2.1e+02 Score=23.73 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=45.2
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEc
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD 199 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG 199 (287)
+++|.+..+.. +.+..-+.-++..|+..|+.|..-....+.-.-.+.|.+.++.++++-+
T Consensus 2 ~~~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 2 RPRILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred CCEEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 35677777765 3555666777889999999997666567888888888888888776644
No 106
>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in all sub-families.
Probab=38.15 E-value=1.5e+02 Score=22.64 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----------CCcEEEEECCCCCeeeEeHHHHHH
Q 042110 158 KVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----------TSSVTIRERDSKDQMRVHVDDVAS 224 (287)
Q Consensus 158 ~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----------~gtVTLRdrdt~~Q~~V~leel~~ 224 (287)
..+.+..+..|+++..-. .+. .+-.+.+.|.++..++ ++.+.|.+-..+....++.+++.+
T Consensus 42 ~~l~~~a~~~gl~~~~~~--~~~----~~l~~~~~P~i~~~~~~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~~l~~ 112 (122)
T cd02259 42 ADLVSLANKLGLTAQGVK--LPL----AALSRLQLPALLLWKQGHFVILYGADKGQVLIADPLEEGPVTLSESELEE 112 (122)
T ss_pred HHHHHHHHHcCCeeeEEE--cCH----HHhccCCCCEEEEcCCCcEEEEEEEcCCEEEEECCcccCCEEeCHHHHHh
Confidence 457777888999988754 233 2344567776654332 567777776545555788877754
No 107
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=37.45 E-value=23 Score=33.49 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=32.2
Q ss_pred eeEEeecceeeEeeee--ecccCcEEeceEeecceehhHHHHHHHH
Q 042110 70 KNVCIKKNMLLISKEK--KKEFQRVFTPSVIEPSSGIDRIIYCLCE 113 (287)
Q Consensus 70 ~~~~i~~~~v~~~~~~--~~~~~~~~~P~VIe~S~GIeRii~aLlE 113 (287)
=.+++-=+-+.+.+-+ ..+.|-.-.|..+|..||+|||.+.|..
T Consensus 128 lGWEVWldGMEITQFTYFQQvGGi~~~pv~~EITYGLERiamylQ~ 173 (283)
T PRK09348 128 LGWEVWLDGMEVTQFTYFQQVGGIECKPVTGEITYGLERLAMYLQG 173 (283)
T ss_pred cceEEEECCeeeeeeeeeeeeCCeeccccceeeehhHHHHHHHHhC
Confidence 3455544444555555 5668888899999999999999988854
No 108
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=36.99 E-value=24 Score=33.25 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=31.6
Q ss_pred eEEeecceeeEeeee--ecccCcEEeceEeecceehhHHHHHHHH
Q 042110 71 NVCIKKNMLLISKEK--KKEFQRVFTPSVIEPSSGIDRIIYCLCE 113 (287)
Q Consensus 71 ~~~i~~~~v~~~~~~--~~~~~~~~~P~VIe~S~GIeRii~aLlE 113 (287)
.+++-=+-+.+.+-+ ..+.|-.-.|...|..||+|||.+.|..
T Consensus 125 GWEVWldGMEITQFTYFQQvGGi~~~pv~~EiTYGLERiamylQ~ 169 (279)
T cd00733 125 GWEVWLDGMEVTQFTYFQQVGGIPCKPISVEITYGLERIAMYLQG 169 (279)
T ss_pred ccEEEECCeeeeeeeeeeeeCCeeccccceeeehhHHHHHHHHhC
Confidence 455444444555555 5668888899999999999999988854
No 109
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=36.09 E-value=1.1e+02 Score=28.51 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCCCceEEEEEecCCh----------hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEE
Q 042110 136 LVAPIKCTVFTLVQNQ----------QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITV 198 (287)
Q Consensus 136 ~iAP~kV~Ilpl~~~~----------e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiI 198 (287)
...|-+|.++|-...+ ........+.+.|++.||+|.+-- ..-..++..|-+.|+|++=+-
T Consensus 82 ~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFi--D~d~~qi~aa~~~gA~~IELh 152 (243)
T COG0854 82 KTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFI--DPDPEQIEAAAEVGAPRIELH 152 (243)
T ss_pred hcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEe--CCCHHHHHHHHHhCCCEEEEe
Confidence 3457899999854311 124566778899999999997654 245689999999999998443
No 110
>PRK09004 FMN-binding protein MioC; Provisional
Probab=35.62 E-value=1.9e+02 Score=24.21 Aligned_cols=35 Identities=26% Similarity=0.145 Sum_probs=27.3
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDI 175 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~ 175 (287)
++.|+.-+..-.....|..|++.|++.|+.+.+-+
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 46677666544577899999999999999988644
No 111
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=35.39 E-value=87 Score=25.03 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=27.2
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEe
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKID 174 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD 174 (287)
-+++|+..+. ....|.+.++.|++.|+++.+=
T Consensus 10 ~di~iia~G~---~~~~al~A~~~L~~~Gi~~~vi 41 (124)
T PF02780_consen 10 ADITIIAYGS---MVEEALEAAEELEEEGIKAGVI 41 (124)
T ss_dssp SSEEEEEETT---HHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeehH---HHHHHHHHHHHHHHcCCceeEE
Confidence 4689999885 5688999999999999998753
No 112
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=35.11 E-value=2.1e+02 Score=23.12 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHhHH-cCCCEEEEEcC-CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 159 VISESLSVAGISHKIDITGASIGKRYARTDE-LGVPCAITVDS-TSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 159 ~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~Ade-iGiPy~IiIG~-~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
++.+-|.++=+..-.|. ..+-|.+++.+=. .+.|++++++. ++..++-.|-.| .++.+++...|...+.+
T Consensus 44 ~v~~~ln~~fv~w~~dv-~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G---~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 44 EVIEYINTRMLFWACSV-AKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEG---LIQPEDLINRLTFIMDA 115 (116)
T ss_pred HHHHHHHcCEEEEEEec-CChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeC---CCCHHHHHHHHHHHHhc
Confidence 35556655434444555 4456777765433 58999999987 666777666555 46889999988876543
No 113
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=34.40 E-value=2.9e+02 Score=24.70 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEE
Q 042110 156 VAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 156 ~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLR 207 (287)
.+.+..+.|++.|+.+.+-. +++...-....+++|++ ..+|+.+|.+...
T Consensus 20 ~~~~~i~~l~~~g~~~~~~T-gR~~~~~~~~~~~~~~~-~~~I~~NGa~i~~ 69 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCT-SKTAAEVEYLRKELGLE-DPFIVENGGAIYG 69 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHHcCCC-CcEEEcCCeEEEe
Confidence 35777788999999998875 88888888888889976 3355557765554
No 114
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.79 E-value=79 Score=29.56 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=50.1
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcE--EEE---E-------
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSV--TIR---E------- 208 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtV--TLR---d------- 208 (287)
++.|+.- .+++..+.+.++.+.|.+.|+.+ +. ..+-++|++|.|||+ ++| +
T Consensus 2 ~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~--~~--------------~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPi 64 (265)
T PRK04885 2 KVAIISN-GDPKSKRVASKLKKYLKDFGFIL--DE--------------KNPDIVISVGGDGTLLSAFHRYENQLDKVRF 64 (265)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHHHHcCCcc--CC--------------cCCCEEEEECCcHHHHHHHHHhcccCCCCeE
Confidence 3566654 34566778888988899999873 21 245688888876554 111 1
Q ss_pred --CCCCCe---eeEeHHHHHHHHHHHhcCCCChH
Q 042110 209 --RDSKDQ---MRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 209 --rdt~~Q---~~V~leel~~~l~~l~~~~~~w~ 237 (287)
-..|.- ..+..+++.+.+.++++|.-.++
T Consensus 65 lGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~ 98 (265)
T PRK04885 65 VGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQVV 98 (265)
T ss_pred EEEeCCCceecccCCHHHHHHHHHHHHcCCceEE
Confidence 112221 13457888888989888865444
No 115
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=33.69 E-value=68 Score=29.53 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=28.9
Q ss_pred CCeeEEeecc-eeeEeeee------ecccCcEEeceEeecceeh-hHHHHHHHH
Q 042110 68 LGKNVCIKKN-MLLISKEK------KKEFQRVFTPSVIEPSSGI-DRIIYCLCE 113 (287)
Q Consensus 68 ~g~~~~i~~~-~v~~~~~~------~~~~~~~~~P~VIe~S~GI-eRii~aLlE 113 (287)
.|+..+++.- ++.+.... ++.+|+...||. -++|+ +|+|.+|+.
T Consensus 209 ~~~~~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~h~--~~~g~~~R~i~ali~ 260 (261)
T cd00778 209 DGRALQSGTSHNLGQNFSKAFDIKYQDKDGQKEYVHQ--TSWGISTRLIGAIIM 260 (261)
T ss_pred CCCEEEEEeccccccccchhcCCEEECCCCCCcCcEE--ecccHHHHHHHHHHh
Confidence 4666777665 44444333 455777777876 55676 899999873
No 116
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=33.27 E-value=64 Score=30.22 Aligned_cols=91 Identities=14% Similarity=0.234 Sum_probs=56.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC-CCCHH--HHHHHhHHcCCCEEEEEcCCCcE------------EE
Q 042110 142 CTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT-GASIG--KRYARTDELGVPCAITVDSTSSV------------TI 206 (287)
Q Consensus 142 V~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s-~~SIG--Kr~k~AdeiGiPy~IiIG~~gtV------------TL 206 (287)
+.|++-.++.+....+..+...|...+..+.++.. ...++ ..+...+...+-+++++|.||++ -+
T Consensus 3 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL~~~~~~~~~~~pi 82 (281)
T COG0061 3 VGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGTLLRAARLLARLDIPV 82 (281)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcHHHHHHHHHhccCCCCE
Confidence 55555555555677889999999999999999875 33444 34555566778888888874432 11
Q ss_pred EECCCCC---eeeEeHHHHHHHHHHHhcC
Q 042110 207 RERDSKD---QMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 207 Rdrdt~~---Q~~V~leel~~~l~~l~~~ 232 (287)
=-...|. -..+..+++.+.+.++.++
T Consensus 83 lgin~G~lGFLt~~~~~~~~~~~~~~~~~ 111 (281)
T COG0061 83 LGINLGHLGFLTDFEPDELEKALDALLEG 111 (281)
T ss_pred EEEeCCCcccccccCHHHHHHHHHHHhcC
Confidence 1112221 1233466676767766664
No 117
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=33.21 E-value=14 Score=16.74 Aligned_cols=6 Identities=67% Similarity=1.619 Sum_probs=4.1
Q ss_pred cceeee
Q 042110 264 NFNLWG 269 (287)
Q Consensus 264 ~~~~~~ 269 (287)
.||-||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 118
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.97 E-value=1.1e+02 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEe
Q 042110 152 QYEEVAKVISESLSVAGISHKID 174 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~Gi~v~vD 174 (287)
+..+.......+++.+|+++.+-
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEE
Confidence 34555666666666666666553
No 119
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=32.71 E-value=34 Score=31.40 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=20.5
Q ss_pred ecccCcEEeceEeecceehhHHHHHHHHh
Q 042110 86 KKEFQRVFTPSVIEPSSGIDRIIYCLCEH 114 (287)
Q Consensus 86 ~~~~~~~~~P~VIe~S~GIeRii~aLlE~ 114 (287)
++.+|+...+|+=..++|+.|+|.|++|+
T Consensus 227 ~~~~~~~~~~~~~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 227 LDENGKPKPLEMGCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred ECCCCCEEeeEecCccchHHHHHHHHHcC
Confidence 34577777777723335678999999984
No 120
>PRK07080 hypothetical protein; Validated
Probab=32.31 E-value=30 Score=33.44 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=13.0
Q ss_pred ceehhHHHHHHHHh
Q 042110 101 SSGIDRIIYCLCEH 114 (287)
Q Consensus 101 S~GIeRii~aLlE~ 114 (287)
+||+||+.++|+.|
T Consensus 285 GFGlER~a~All~~ 298 (317)
T PRK07080 285 GFGLERLALALFRH 298 (317)
T ss_pred ecCHHHHHHHHHHH
Confidence 68999999999986
No 121
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=32.01 E-value=1.7e+02 Score=29.71 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=39.2
Q ss_pred CceEEEE--EecCChhHHHH-HHHHHHHHHHCCCeEEEeCCCC--CHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 139 PIKCTVF--TLVQNQQYEEV-AKVISESLSVAGISHKIDITGA--SIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 139 P~kV~Il--pl~~~~e~~~~-A~~Ia~~LR~~Gi~v~vD~s~~--SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
|-++.|+ |.+.+...... ...+...|+.+|+.+++-.+.. ....-.+.++..+...+|++|-|||+
T Consensus 111 ~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTl 181 (481)
T PLN02958 111 PKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGIL 181 (481)
T ss_pred CcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHH
Confidence 4455544 54433222222 3457779999999987765432 23233334456788899999986653
No 122
>PRK07308 flavodoxin; Validated
Probab=31.76 E-value=1.5e+02 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=26.5
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT 176 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s 176 (287)
++.|+.-+..-.-...|..|++.|++.|+.+.+.+.
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 456666554334678899999999999998876553
No 123
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=31.63 E-value=1.1e+02 Score=24.61 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCeEEEeCC-CCCHHHHHHHhHHcCCC--EEEEEcCCCc
Q 042110 157 AKVISESLSVAGISHKIDIT-GASIGKRYARTDELGVP--CAITVDSTSS 203 (287)
Q Consensus 157 A~~Ia~~LR~~Gi~v~vD~s-~~SIGKr~k~AdeiGiP--y~IiIG~~gt 203 (287)
..++...|+..+..+.+-.. ......++.+....+-+ .+|++|.|||
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGT 66 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGT 66 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHH
T ss_pred HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccH
Confidence 37889999999988876654 45688888875555554 8899988554
No 124
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=30.64 E-value=21 Score=33.24 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=59.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHHHHC-CCeEEEeCC-CCCHH-----------------------HHHHHhHHcCCCEEE
Q 042110 142 CTVFTLVQNQQYEEVAKVISESLSVA-GISHKIDIT-GASIG-----------------------KRYARTDELGVPCAI 196 (287)
Q Consensus 142 V~Ilpl~~~~e~~~~A~~Ia~~LR~~-Gi~v~vD~s-~~SIG-----------------------Kr~k~AdeiGiPy~I 196 (287)
|.|+.=..+.+..+.+.++++.|++. |+.+.++.. ...+. .....-...++-++|
T Consensus 2 Vgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ii 81 (285)
T PF01513_consen 2 VGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLII 81 (285)
T ss_dssp EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEEE
Confidence 55554333345678899999999999 887777652 11111 112333457999999
Q ss_pred EEcCCC------------cEEEEECCCCC---eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 197 TVDSTS------------SVTIRERDSKD---QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 197 iIG~~g------------tVTLRdrdt~~---Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
++|.|| .+-|=--.+|. --.+..+++.+.+.++++|...++
T Consensus 82 ~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~~~~ 137 (285)
T PF01513_consen 82 VLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEYSIE 137 (285)
T ss_dssp EEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHCEEE
T ss_pred EECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCeEEE
Confidence 999832 22222222332 234467888888888888766555
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=30.55 E-value=96 Score=23.92 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHc---CCCEEEEEcCCCcEEE
Q 042110 167 AGISHKIDITGASIGKRYARTDEL---GVPCAITVDSTSSVTI 206 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Adei---GiPy~IiIG~~gtVTL 206 (287)
..+.+..|. +..+.++|.-.+.. +.|..++||.+|.|.-
T Consensus 82 ~~~~~~~D~-~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 82 LPFPVLSDP-DGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp CSSEEEEET-TSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred cccccccCc-chHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 567888885 78899988766543 9999999999887753
No 126
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=30.41 E-value=2.2e+02 Score=25.63 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCC--CeeeEeHHHHHHHH
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSK--DQMRVHVDDVASIV 226 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~--~Q~~V~leel~~~l 226 (287)
..+...+..++|++.|+.+.+-. +|+...-....+++|++.- +|+.+|.+... .+.. .+..++.+.+.+.+
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaT-GR~~~~~~~~~~~l~~~~~-~I~~NGa~I~~-~~~~~l~~~~i~~~~~~~i~ 92 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFAT-GRHVLEMQHILGALSLDAY-LITGNGTRVHS-LEGELLHRQDLPADVAELVL 92 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEC-CCCHHHHHHHHHHcCCCCc-EEecCCcEEEc-CCCCEEEeecCCHHHHHHHH
Confidence 34556777888999999998876 8888877777888888732 34446765542 2221 13345555554444
No 127
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=29.99 E-value=2.7e+02 Score=21.79 Aligned_cols=63 Identities=6% Similarity=0.099 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEc--C------------CCcEEEEECCCCCeeeEeHHHH
Q 042110 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVD--S------------TSSVTIRERDSKDQMRVHVDDV 222 (287)
Q Consensus 157 A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG--~------------~gtVTLRdrdt~~Q~~V~leel 222 (287)
...+.+.++..|+.+..-..+.+- .++ .+...|+++.+. . ++.+.|.+-. +....++.+++
T Consensus 46 ~~~l~~~a~~~Gl~~~~~~~~~~~-~~l---~~~~~P~I~~~~~~~~~~~~~Vl~~~~~~~~~i~dp~-~~~~~~~~~ef 120 (136)
T cd02418 46 LLGLVKAAEKLGFETRAVKADMDL-FEL---KDIPLPFIAHVIKEWKLNHYVVVYKIKKKKILIADPA-VGITKISKEEF 120 (136)
T ss_pred HHHHHHHHHHCCCeeEEEEcccch-hhH---hcCCCCEEEEEccCCCCCeEEEEEEEcCCEEEEECCC-CCCEEeeHHHH
Confidence 356778888999999876533211 123 456788888753 1 4566776653 33446777776
Q ss_pred HH
Q 042110 223 AS 224 (287)
Q Consensus 223 ~~ 224 (287)
.+
T Consensus 121 ~~ 122 (136)
T cd02418 121 EK 122 (136)
T ss_pred Hh
Confidence 54
No 128
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=29.29 E-value=2.2e+02 Score=24.76 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEEeCC---C--------------CCHHHHHHHhHHcCCCEEEEEcC
Q 042110 149 QNQQYEEVAKVISESLSVAGISHKIDIT---G--------------ASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s---~--------------~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
+++-....|..+++.|++.|+.|.+--. + .++..|-..|+..++-+.|-|=.
T Consensus 24 E~~~~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~ 92 (189)
T TIGR02883 24 EKDITLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHL 92 (189)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEec
Confidence 3334558899999999999999974322 1 26889999999999998887754
No 129
>PRK08392 hypothetical protein; Provisional
Probab=29.28 E-value=1.3e+02 Score=26.73 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCHH-HHHHHhHHcCCCEEEEEcC
Q 042110 154 EEVAKVISESLSVAGISHKIDITGASIG-KRYARTDELGVPCAITVDS 200 (287)
Q Consensus 154 ~~~A~~Ia~~LR~~Gi~v~vD~s~~SIG-Kr~k~AdeiGiPy~IiIG~ 200 (287)
.+...++++.+.+.|..++++.+..... .-++.+.+.|+| +++|.
T Consensus 136 ~~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~--~~igS 181 (215)
T PRK08392 136 EEELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGIK--LTFAS 181 (215)
T ss_pred HHHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCE--EEEeC
Confidence 3566899999999999999997533333 345788889998 56775
No 130
>PRK13057 putative lipid kinase; Reviewed
Probab=28.61 E-value=1.1e+02 Score=28.29 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCHH--HHHHHhHHcCCCEEEEEcCCCc
Q 042110 156 VAKVISESLSVAGISHKIDITGASIG--KRYARTDELGVPCAITVDSTSS 203 (287)
Q Consensus 156 ~A~~Ia~~LR~~Gi~v~vD~s~~SIG--Kr~k~AdeiGiPy~IiIG~~gt 203 (287)
...++.+.|++.|+.+.+..+. .-+ .++.+....+...+|++|-|||
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~-~~~~a~~~~~~~~~~~d~iiv~GGDGT 62 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAE-DPDDLSEVIEAYADGVDLVIVGGGDGT 62 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecC-CHHHHHHHHHHHHcCCCEEEEECchHH
Confidence 4568888899999987766532 222 2333334567788888887554
No 131
>TIGR00721 tfx DNA-binding protein, Tfx family. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.
Probab=28.50 E-value=1.8e+02 Score=24.71 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHh-------HHcCCCEEEEEcCCCcEEEE
Q 042110 137 VAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYART-------DELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 137 iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~A-------deiGiPy~IiIG~~gtVTLR 207 (287)
.||+.|.| |-+. ++......|.+++.+.||.|.+|. ..|=..++.+ ....-||.|.|-.+|.+.++
T Consensus 63 ~a~~~~~~-~~g~--~~~~~~~~v~~~~d~~~ikv~~~~--~~l~~~~~~~~~~~~~~r~~~~~~~i~~~~~g~~~v~ 135 (137)
T TIGR00721 63 KSPVRILC-RRGD--DLDEIPKRLFKKADEEGIKVIYDT--IELIFLIREKASHRIEHRVVKSDFEIGVLRDGDIIVD 135 (137)
T ss_pred cCCEEEEe-cCCC--cHHHhHHHHHHHHhHcCCeeccCH--HHHHHHHHHhchhHhhcCeeccceEEEEccCceEEEe
Confidence 57776665 4443 588889999999999999999886 3343444333 23446888888778887764
No 132
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=28.17 E-value=69 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.0
Q ss_pred CCcEEEEEC-CCCCeeeEeHHHHH
Q 042110 201 TSSVTIRER-DSKDQMRVHVDDVA 223 (287)
Q Consensus 201 ~gtVTLRdr-dt~~Q~~V~leel~ 223 (287)
+++.+|..+ ..++...||+.+|.
T Consensus 34 ~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T PF08141_consen 34 NGTARVHPLDNPEEEQEVPVNDLE 57 (58)
T ss_pred CCeEEEEECCCCCcEEEEEHHHcc
Confidence 899999999 56788899998874
No 133
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=28.04 E-value=1.6e+02 Score=33.65 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC-CCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECC--CCCe
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT-GASIGKRYARTDELGVPCAITVDSTSSVTIRERD--SKDQ 214 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrd--t~~Q 214 (287)
..++|.|+..+. -+...+.+|++.|-+.||++++=.. +.+.-..+.+|++--+-+++++- ++...+|.+. -...
T Consensus 1258 ~~cdvlics~g~--~l~t~~~~l~~~LWs~gI~a~i~~~~s~~~~e~~e~~~~~~i~~iliv~-n~~~~vks~~~e~~se 1334 (1351)
T KOG1035|consen 1258 SSCDVLICSRGS--GLLTQRMELVAKLWSKGIKAEIVPDPSPSLEELTEYANEHEITCILIVT-NQKEKVKSFELERKSE 1334 (1351)
T ss_pred ccccEEEEecCC--chHHHHHHHHHHHHHcCcccceeeCCCcchHHHHHHHhcCceEEEEEEe-cceeeechhHHhhhhh
Confidence 457888888874 5778899999999999999986543 67888888888887777777775 3334443332 2222
Q ss_pred eeEeHHHHHHHHHH
Q 042110 215 MRVHVDDVASIVKA 228 (287)
Q Consensus 215 ~~V~leel~~~l~~ 228 (287)
..+-..+|++.+.+
T Consensus 1335 ~~~~~~elv~f~~~ 1348 (1351)
T KOG1035|consen 1335 KVVGRTELVEFLLQ 1348 (1351)
T ss_pred hhhhHHHHHHHHHH
Confidence 33334455555543
No 134
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=27.83 E-value=99 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=28.5
Q ss_pred eEEeecceeeEeeee--ecccCcEEeceEeecceehhHHHHHHH
Q 042110 71 NVCIKKNMLLISKEK--KKEFQRVFTPSVIEPSSGIDRIIYCLC 112 (287)
Q Consensus 71 ~~~i~~~~v~~~~~~--~~~~~~~~~P~VIe~S~GIeRii~aLl 112 (287)
.+++-=+-+.+.+-+ ..+.|-.-.|..+|..||+|||.+.|.
T Consensus 124 GWEVWldGMEITQfTYFQQvGGi~~~pv~~EITYGLERiamylQ 167 (284)
T PF02091_consen 124 GWEVWLDGMEITQFTYFQQVGGIDCKPVSVEITYGLERIAMYLQ 167 (284)
T ss_dssp EEEEEETTCEEEEEEEEEEETTEE-SS--EEEEEEHHHHHHHHC
T ss_pred ccEEEECCEEEEEeeeeeeeCCccccccceehhhhHHHHHHHHh
Confidence 455544445555555 566888899999999999999988774
No 135
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=27.80 E-value=3.5e+02 Score=22.33 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
+.+...++++.+...---+.+|........-.++..-.|+|..++++.+|.+.-+- .|. .+.+++.+.|..++.+
T Consensus 38 ~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~--~G~---~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 38 MAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQS--IGL---QPKQVLAQNLDALVAG 112 (142)
T ss_pred hHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEE--eCC---CCHHHHHHHHHHHHcC
Confidence 34445556665543211233443222222334445567999999998767544333 332 3467788888887775
Q ss_pred C
Q 042110 233 Q 233 (287)
Q Consensus 233 ~ 233 (287)
.
T Consensus 113 ~ 113 (142)
T cd02950 113 E 113 (142)
T ss_pred C
Confidence 4
No 136
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=27.72 E-value=3.1e+02 Score=21.66 Aligned_cols=61 Identities=11% Similarity=-0.029 Sum_probs=36.9
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCC--CCHHHHHHHhHHcCCCEEEEEcC
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITG--ASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~--~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
++|+|..-.+.+.....+..|...|...|+.+.+|+.. ...-..+..+=+.---+++++..
T Consensus 2 ~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~ 64 (140)
T smart00255 2 YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSP 64 (140)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECc
Confidence 56777654422235678899999999999999998742 22112444444433334555554
No 137
>PRK10976 putative hydrolase; Provisional
Probab=27.66 E-value=2.4e+02 Score=25.23 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEE
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTI 206 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTL 206 (287)
..+...+..++|+++|+.+.+-. +|+...-....+.+|.+.- +|+.+|.+..
T Consensus 20 is~~~~~ai~~l~~~G~~~~iaT-GR~~~~~~~~~~~l~~~~~-~I~~NGa~i~ 71 (266)
T PRK10976 20 LSPYAKETLKLLTARGIHFVFAT-GRHHVDVGQIRDNLEIKSY-MITSNGARVH 71 (266)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEc-CCChHHHHHHHHhcCCCCe-EEEcCCcEEE
Confidence 34556777888999999998876 8888877777788887732 3445776554
No 138
>PLN02727 NAD kinase
Probab=27.62 E-value=1.1e+02 Score=34.02 Aligned_cols=95 Identities=11% Similarity=0.120 Sum_probs=58.4
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHC-CCeEEEeCCCCC-HH--HHH--------HHhHHc--CCCEEEEEcCCCcE
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVA-GISHKIDITGAS-IG--KRY--------ARTDEL--GVPCAITVDSTSSV 204 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~-Gi~v~vD~s~~S-IG--Kr~--------k~Adei--GiPy~IiIG~~gtV 204 (287)
|-.|.|+.-..+ +....+.+|++-|.+. |+.|.++..... ++ ..+ ...+.+ .+-++|+||.|||+
T Consensus 678 ~rtVgIV~K~~~-ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTl 756 (986)
T PLN02727 678 PKTVLLLKKLGQ-ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVI 756 (986)
T ss_pred CCEEEEEcCCcH-HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHH
Confidence 446777755443 6778889999999997 999999864221 10 000 001122 47899999996654
Q ss_pred --EEEE----------CCCCC---eeeEeHHHHHHHHHHHhcCCC
Q 042110 205 --TIRE----------RDSKD---QMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 205 --TLRd----------rdt~~---Q~~V~leel~~~l~~l~~~~~ 234 (287)
+.|. -..|. -..+..+++.+.|.++++|.-
T Consensus 757 LrAar~~~~~~iPILGINlGrLGFLTdi~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 757 LHASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred HHHHHHhcCCCCCEEEEeCCCccccccCCHHHHHHHHHHHHcCCc
Confidence 1111 11222 224567888888988888753
No 139
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=27.55 E-value=71 Score=23.29 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.5
Q ss_pred EcC-CCcEEEEECCC-CCeeeEeHHHHH
Q 042110 198 VDS-TSSVTIRERDS-KDQMRVHVDDVA 223 (287)
Q Consensus 198 IG~-~gtVTLRdrdt-~~Q~~V~leel~ 223 (287)
||+ +++.+|..++. ++...||+.+|.
T Consensus 30 vde~~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T TIGR02861 30 VDEQSGTARVYSLDNPGKEQDVPVNDLE 57 (58)
T ss_pred EcCCCCeEEEEECCCCCcEEEEEHHHcc
Confidence 444 89999999994 889999998874
No 140
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.16 E-value=1.4e+02 Score=22.93 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=28.7
Q ss_pred HHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 164 LSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 164 LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
+...|+.+ ++..+.++..-.+.....|+|++++.|.
T Consensus 29 ~~~~~i~i-i~~gG~~~~~~~~ll~~~~i~~~vi~D~ 64 (97)
T cd01026 29 LDEAGISI-IPVGGKNFKPFIKLLNALGIPVAVLTDL 64 (97)
T ss_pred HHHCCEEE-EEeCCcchHHHHHHHHHcCCCEEEEEeC
Confidence 55667665 5555558888889999999999999998
No 141
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=27.06 E-value=1.7e+02 Score=26.80 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCHHHHHHH-hHHcCCCEEEEEcC-----CCcE
Q 042110 157 AKVISESLSVAGISHKIDITGASIGKRYAR-TDELGVPCAITVDS-----TSSV 204 (287)
Q Consensus 157 A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~-AdeiGiPy~IiIG~-----~gtV 204 (287)
...+++.|++.|+.|.+=. +.+++.-+++ +| .+++|. +|.|
T Consensus 147 G~~~a~~L~~~gi~v~~i~-d~~~~~~m~~~vd------~VliGad~v~~nG~v 193 (282)
T PF01008_consen 147 GRLMAKELAEAGIPVTLIP-DSAVGYVMPRDVD------KVLIGADAVLANGGV 193 (282)
T ss_dssp HHTHHHHHHHTT-EEEEE--GGGHHHHHHCTES------EEEEE-SEEETTS-E
T ss_pred hhhHHHHhhhcceeEEEEe-chHHHHHHHHhCC------eeEEeeeEEecCCCE
Confidence 4789999999999998877 6789999998 66 367886 6654
No 142
>cd06260 DUF820 Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.
Probab=26.88 E-value=2.8e+02 Score=22.31 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=33.2
Q ss_pred CeEEEeCCCC---CHHHHHHHhHHcCCCEEEEEcC-CCcEEEEECC
Q 042110 169 ISHKIDITGA---SIGKRYARTDELGVPCAITVDS-TSSVTIRERD 210 (287)
Q Consensus 169 i~v~vD~s~~---SIGKr~k~AdeiGiPy~IiIG~-~gtVTLRdrd 210 (287)
+.+++...+. .+..|++...+.|+|..+++|. .++|++-.+.
T Consensus 84 lviEV~S~~~~~~d~~~K~~~Y~~~gv~~ywivd~~~~~v~~~~~~ 129 (155)
T cd06260 84 LVVEVLSPSTARYDRGDKLALYARAGVPEYWLVDPERRRVEVYRLP 129 (155)
T ss_pred EEEEEeCCCchhhHHHHHHHHHHhcCCCEEEEEEcCCCEEEEEEeC
Confidence 5667766543 4777777777799999999999 8899998884
No 143
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.88 E-value=2.2e+02 Score=26.86 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=45.8
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCC--CHHHHHHHhHHcCCCEEEEEcCCCcEE
Q 042110 143 TVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGA--SIGKRYARTDELGVPCAITVDSTSSVT 205 (287)
Q Consensus 143 ~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~--SIGKr~k~AdeiGiPy~IiIG~~gtVT 205 (287)
.+-|.+-+.....+..++...|++.|....+-.... ....-.+++...|+-.+|..|-||||.
T Consensus 8 i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~ 72 (301)
T COG1597 8 IYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVN 72 (301)
T ss_pred EEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHH
Confidence 333555444567788999999999998887766533 466777777778899999998866543
No 144
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=26.84 E-value=3.2e+02 Score=24.73 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEE
Q 042110 155 EVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 155 ~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLR 207 (287)
+...+..++|+++|+.+.+-. +++...-...++++|++-.-+|+.+|.+...
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaT-GR~~~~i~~~~~~l~~~~~~~I~~NGa~I~~ 78 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCS-SKTAAEMLPLQQTLGLQGLPLIAENGAVIQL 78 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEc-CCCHHHHHHHHHHhCCCCCcEEEeCCCEEEe
Confidence 556677889999999998876 8998888888899987422245557766554
No 145
>PRK05588 histidinol-phosphatase; Provisional
Probab=26.80 E-value=2e+02 Score=26.10 Aligned_cols=47 Identities=28% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCH-------HHHHHHhHHcCCCEEEEEcC
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGASI-------GKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~SI-------GKr~k~AdeiGiPy~IiIG~ 200 (287)
......++.+.+.+.|+.++++.++-.- ..-++++-+.|+|+ |++|.
T Consensus 164 ~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~-i~lgS 217 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKY-ITLGS 217 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcE-EEEEC
Confidence 4567899999999999999999853221 13477888999996 67775
No 146
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=26.77 E-value=4.2e+02 Score=22.89 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 155 EVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 155 ~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
+...+..++|++.|+.+.+-. +++.......+..+|.+-. +|..+|.+....
T Consensus 23 ~~~~~al~~l~~~G~~~~iaT-GR~~~~~~~~~~~l~~~~~-~i~~nGa~i~~~ 74 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILAT-GNVLCFARAAAKLIGTSGP-VIAENGGVISVG 74 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEc-CCchHHHHHHHHHhCCCCc-EEEecCeEEEEc
Confidence 455667788999999998876 8888877777788888732 344466655443
No 147
>PRK12361 hypothetical protein; Provisional
Probab=26.62 E-value=2.3e+02 Score=28.95 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=34.6
Q ss_pred EecCChhHHHHHHHHHHHHHHCCCeEEEeCC--CCCHHHHHHHhHHcCCCEEEEEcCCCc
Q 042110 146 TLVQNQQYEEVAKVISESLSVAGISHKIDIT--GASIGKRYARTDELGVPCAITVDSTSS 203 (287)
Q Consensus 146 pl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s--~~SIGKr~k~AdeiGiPy~IiIG~~gt 203 (287)
|.+.+........++.+.|++. +.+.+... .+....-.+.+...|...+|++|.|||
T Consensus 251 P~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGT 309 (547)
T PRK12361 251 PVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGT 309 (547)
T ss_pred CCCCCCcHHHHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcH
Confidence 5443323445677888888775 66655443 233333334455678889999998654
No 148
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=26.34 E-value=1.6e+02 Score=23.20 Aligned_cols=59 Identities=12% Similarity=0.233 Sum_probs=41.1
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----------CCcEEEEECCCCCeeeEeHHHHHH
Q 042110 159 VISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----------TSSVTIRERDSKDQMRVHVDDVAS 224 (287)
Q Consensus 159 ~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----------~gtVTLRdrdt~~Q~~V~leel~~ 224 (287)
.+.+.+++.|+.+..-.. ++. ++ .....|+++.++. ++.+.|.|- +.....++.+++.+
T Consensus 49 ~L~~~~~~~gl~~~~~~~--~~~-~l---~~~~~P~I~~~~~~h~vVi~~~~~~~~~i~dP-~~g~~~~~~~~f~~ 117 (131)
T PF03412_consen 49 DLKRAARKYGLKAKAVKL--NFE-KL---KRLPLPAIAHLKDGHFVVIYKIDDGRVLIYDP-KKGKIKLSKEEFEE 117 (131)
T ss_dssp CHHHHHHHTTEEEEEEE----GG-GC---TCGGSSEEEEECCCEEEEEEEECCCEEEECCT-TTCEEEEEHHHHHH
T ss_pred HHHHHHHhcccceeeeec--chh-hh---hhccccEEEEecCcceEEEEeEcCcEEEEEeC-CCCeEEEeHHHHHh
Confidence 467888999998876432 222 22 6677888887765 788888887 44567889888754
No 149
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=26.18 E-value=63 Score=30.68 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.0
Q ss_pred eceEeecceehhHHHHHHHHh
Q 042110 94 TPSVIEPSSGIDRIIYCLCEH 114 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~ 114 (287)
-||- +.++|+||++..++..
T Consensus 302 pp~~-G~glG~eRLvm~l~g~ 321 (335)
T PF00152_consen 302 PPHG-GFGLGLERLVMLLLGL 321 (335)
T ss_dssp -SEE-EEEEEHHHHHHHHHT-
T ss_pred cccC-cceehHHHHHHHHcCC
Confidence 3444 8899999999988765
No 150
>PRK08105 flavodoxin; Provisional
Probab=25.92 E-value=1.5e+02 Score=24.83 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=28.2
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDI 175 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~ 175 (287)
++.|+.-+..-.....|..|++.|++.|+.+.+-+
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~ 37 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFE 37 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEec
Confidence 46777766654577899999999999999998765
No 151
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=25.59 E-value=3.2e+02 Score=21.20 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHH-hHHcCCCEEEEEcC-CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 158 KVISESLSVAGISHKIDITGASIGKRYAR-TDELGVPCAITVDS-TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 158 ~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~-AdeiGiPy~IiIG~-~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.++.+.|.++-+.+.+|..+ +-|.++.. ....++|..++++. +|++-- +-.| .++.+++.+.|++.+.
T Consensus 43 ~~v~~~l~~~~v~~~~d~~~-~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~--~~~G---~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 43 ESVKEFIRENFIFWQCDIDS-SEGQRFLQSYKVDKYPHIAIIDPRTGEVLK--VWSG---NITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHHHHhCEEEEEecCCC-ccHHHHHHHhCccCCCeEEEEeCccCcEeE--EEcC---CCCHHHHHHHHHHHHh
Confidence 34667777777777787743 44555543 34579999999998 776532 2223 3577888888876543
No 152
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=25.20 E-value=1.5e+02 Score=23.29 Aligned_cols=39 Identities=13% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCEEEEEcC-C--CcEEEEECCCCCe-eeEeHHHHHHHHHHH
Q 042110 191 GVPCAITVDS-T--SSVTIRERDSKDQ-MRVHVDDVASIVKAL 229 (287)
Q Consensus 191 GiPy~IiIG~-~--gtVTLRdrdt~~Q-~~V~leel~~~l~~l 229 (287)
+..+-+-+++ . -.|+|.|++|++- ..||-+++++..+.+
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 3444455555 2 3578889999976 678999998876654
No 153
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.18 E-value=3.3e+02 Score=21.10 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC-CCcEEEEECCCCCee----eEeHHHHHHHHHHHh
Q 042110 158 KVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS-TSSVTIRERDSKDQM----RVHVDDVASIVKALT 230 (287)
Q Consensus 158 ~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~-~gtVTLRdrdt~~Q~----~V~leel~~~l~~l~ 230 (287)
..|.+.|++.|+.|. +..+.+ |..++--+|+=|. ++...+-|..+.-.+ -.+.+++.+.|++.+
T Consensus 11 s~v~~~L~~~GyeVv-~l~~~~--------~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 11 SNVKEALREKGYEVV-DLENEQ--------DLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred hHHHHHHHHCCCEEE-ecCCcc--------ccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 468899999999984 443322 5678888898888 555445443332211 124677777766543
No 154
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=25.02 E-value=1.1e+02 Score=26.54 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEE
Q 042110 160 ISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 160 Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLR 207 (287)
..+.+++.++.......+..++++|.- .++|+.++||.+|+|.-+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~i~~~y~v---~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 118 HRRFLKDHELGGERYVVSAEIGMAFQV---GKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHHHHHhcCCCcceeechhHHHHhccC---CccceEEEECCCCeEEEc
Confidence 345556666653221225677877753 579999999998977543
No 155
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.99 E-value=2.8e+02 Score=20.36 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=31.4
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHC--CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcE
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVA--GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSV 204 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~--Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtV 204 (287)
+++.-+++.++ . .+..+.+++. +... +......-..-.+...-.++|..+++|.+|.|
T Consensus 36 v~~v~Vs~d~~--~----~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 36 VEFVFVSLDED--E----EEWKKFLKKNNFPWYN-VPFDDDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp EEEEEEE-SSS--H----HHHHHHHHTCTTSSEE-EETTTHHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred EEEEEEEeCCC--H----HHHHHHHHhcCCCceE-EeeCcchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 55555555432 2 2344555555 2222 22222334455555677899999999988765
No 156
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=24.99 E-value=2.1e+02 Score=22.53 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=40.9
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHH------cCCCEEEEEcCCCcEEEEECCCCC
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDE------LGVPCAITVDSTSSVTIRERDSKD 213 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~Ade------iGiPy~IiIG~~gtVTLRdrdt~~ 213 (287)
++++.+..++ ...+.+.++.+....+.+..|. +++++++|.-... ...|+.++||.+|+|.-+......
T Consensus 57 ~~~i~is~d~----~~~~~~~~~~~~~~~~~~l~D~-~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 57 AEVLGVSVDS----PFSHKAWAEKEGGLNFPLLSDP-DGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CEEEEEeCCC----HHHHHHHHhcccCCCceEEECC-ChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 4455555432 1234444444434567776665 5677777764432 245789999988887777665543
No 157
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=24.57 E-value=2.2e+02 Score=27.33 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=39.6
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEE-eCCC-CCHHHHHHHhHHcCCCEEEEEcC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKI-DITG-ASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~v-D~s~-~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
++.|+..+. ....|.+.++.|.+.||++++ |... ..+....=...-.+...+||+.+
T Consensus 203 ditiia~G~---~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE 261 (327)
T CHL00144 203 DITILTYSR---MRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEE 261 (327)
T ss_pred CEEEEEccH---HHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEEC
Confidence 566666654 567899999999999999986 5443 34555433333446678898886
No 158
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=24.44 E-value=52 Score=33.99 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=13.2
Q ss_pred ceehhHHHHHHHH-hccc
Q 042110 101 SSGIDRIIYCLCE-HCFY 117 (287)
Q Consensus 101 S~GIeRii~aLlE-~~~~ 117 (287)
+||++|++++|+. ||++
T Consensus 475 G~gleR~i~Ali~~HG~d 492 (520)
T TIGR00415 475 GIGISRWIVGFLAQKGFE 492 (520)
T ss_pred eccHHHHHHHHHHHhCCC
Confidence 4578899999997 4565
No 159
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.01 E-value=3e+02 Score=23.51 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=39.4
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEe------CCCCCHHHHHHHhHHcCCCEEEE
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKID------ITGASIGKRYARTDELGVPCAIT 197 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD------~s~~SIGKr~k~AdeiGiPy~Ii 197 (287)
.+..|.|+.=..+ -=--+.-+++.|.+.|+.|.+- ..+.....+++.+...|+++.-.
T Consensus 24 ~~~~v~il~G~Gn--NGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 24 KGPRVLILCGPGN--NGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp TT-EEEEEE-SSH--HHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred CCCeEEEEECCCC--ChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 3456777654432 2356788999999999999981 22455788999999999877643
No 160
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=23.98 E-value=1.1e+02 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.7
Q ss_pred EcC-CCcEEEEECCC-CCeeeEeHHHHHH
Q 042110 198 VDS-TSSVTIRERDS-KDQMRVHVDDVAS 224 (287)
Q Consensus 198 IG~-~gtVTLRdrdt-~~Q~~V~leel~~ 224 (287)
||+ +++.+|..++. .+...|++.+|.+
T Consensus 30 vde~~~tA~I~~l~~p~~~~~Vpv~~L~E 58 (59)
T PRK03174 30 VDEQNGTARIHPLDNPNQEQSVPLASLKE 58 (59)
T ss_pred EcCCCCeEEEEECCCCCcEEEEEHHHhcc
Confidence 444 89999999974 7888999988754
No 161
>PLN02204 diacylglycerol kinase
Probab=23.72 E-value=3e+02 Score=29.11 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=39.7
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----HHHHHHHhHHcCCCEEEEEcCCCc
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-----IGKRYARTDELGVPCAITVDSTSS 203 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----IGKr~k~AdeiGiPy~IiIG~~gt 203 (287)
-|.|=|.+.+.........++..|+++|+.+.+-...+. +-+++..++..+...+|.+|.||+
T Consensus 163 lVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt 230 (601)
T PLN02204 163 LVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGF 230 (601)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccH
Confidence 344447655433444555789999999999877654322 222223334678899999998554
No 162
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.68 E-value=3.4e+02 Score=23.32 Aligned_cols=58 Identities=21% Similarity=-0.018 Sum_probs=42.0
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEE
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAI 196 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~I 196 (287)
+.++|.|.+++. +.+..-+.-+++.|++.|+.|.+.-.-.+...-.+.|-+..+-.++
T Consensus 11 ~rprvlvak~Gl-DgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIg 68 (143)
T COG2185 11 ARPRVLVAKLGL-DGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIG 68 (143)
T ss_pred CCceEEEeccCc-cccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEE
Confidence 457899999884 4677778899999999999998776556665555555444444433
No 163
>PRK00861 putative lipid kinase; Reviewed
Probab=23.58 E-value=2.7e+02 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCeEEEeC--CCCCHHHHHHHhHHcCCCEEEEEcCCC
Q 042110 157 AKVISESLSVAGISHKIDI--TGASIGKRYARTDELGVPCAITVDSTS 202 (287)
Q Consensus 157 A~~Ia~~LR~~Gi~v~vD~--s~~SIGKr~k~AdeiGiPy~IiIG~~g 202 (287)
..++...|+. ++.+++-. ..+......+.+...|...+|++|-||
T Consensus 22 ~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDG 68 (300)
T PRK00861 22 LALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDG 68 (300)
T ss_pred HHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChH
Confidence 4455555655 34443322 233444455556566777777777643
No 164
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.26 E-value=6.1e+02 Score=23.60 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeee--EeHHHHHHHHHHH
Q 042110 155 EVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMR--VHVDDVASIVKAL 229 (287)
Q Consensus 155 ~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~--V~leel~~~l~~l 229 (287)
+.+.++.+.++++|+....=.+..+-..|++.-.+..-.|+-.|...| -||.+.. -.+.++++.+++.
T Consensus 131 ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~G-------vTG~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 131 EESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTG-------VTGLKTELDKKLKKLIETIKKM 200 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCC-------CCCCCccccHHHHHHHHHHHHh
Confidence 346788899999999988777777778899887777666776665411 2343322 2355555556553
No 165
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=22.94 E-value=27 Score=29.66 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.5
Q ss_pred cCcEEeceEeecceehhHH
Q 042110 89 FQRVFTPSVIEPSSGIDRI 107 (287)
Q Consensus 89 ~~~~~~P~VIe~S~GIeRi 107 (287)
.++..+|++|+.++|+||+
T Consensus 193 ~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 193 ALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred cccccCceeecCccCccCC
Confidence 4667799999999999995
No 166
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=22.84 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=21.9
Q ss_pred EcC-CCcEEEEECCC-CCeeeEeHHHHHH
Q 042110 198 VDS-TSSVTIRERDS-KDQMRVHVDDVAS 224 (287)
Q Consensus 198 IG~-~gtVTLRdrdt-~~Q~~V~leel~~ 224 (287)
||+ +++.+|..+++ .+...|++.+|.+
T Consensus 30 vde~~~tA~V~~~~~p~~e~~Vpv~~L~E 58 (59)
T PRK01625 30 CDEQSGVAQVYDVSNPGESVHVDVTALEE 58 (59)
T ss_pred EcCCCCeEEEEecCCCCcEEEEEHHHccc
Confidence 444 89999999987 6788999988754
No 167
>PLN02903 aminoacyl-tRNA ligase
Probab=22.70 E-value=67 Score=34.12 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=34.5
Q ss_pred eceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEE
Q 042110 94 TPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~v 173 (287)
-||- +.++|+||+++.|... -. =|.|+.||..-.-.+ ++.+.+.. --.+.|+..||++.+
T Consensus 590 Pphg-G~alGldRlvmll~~~-~~---------IrdviaFPKt~~g~d----lm~~aPs~-----v~~~qL~el~i~~~~ 649 (652)
T PLN02903 590 PPHG-GIAYGLDRLVMLLAGA-KS---------IRDVIAFPKTTTAQC----ALTRAPSE-----VDDKQLQDLSIASTA 649 (652)
T ss_pred CCCC-ceeecHHHHHHHHcCC-Cc---------hHheEecCCCCCccc----cccCCCCc-----CCHHHHHhcceEeec
Confidence 4666 8899999999776432 22 245888887644332 33221110 012557777877643
No 168
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=22.62 E-value=3.6e+02 Score=20.73 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----------CCcEEEEECCCCCeeeEeHHHHHH
Q 042110 157 AKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----------TSSVTIRERDSKDQMRVHVDDVAS 224 (287)
Q Consensus 157 A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----------~gtVTLRdrdt~~Q~~V~leel~~ 224 (287)
...+.+.+++.|+.+..-.. +.- .+-+....|+++...+ ++.+.|.+-+.+. ..++.+++.+
T Consensus 46 ~~~l~~~a~~~gl~~~~~~~--~~~---~~l~~~~lP~I~~~~~~~~~Vl~~~~~~~~~i~dp~~~~-~~~~~~~l~~ 117 (126)
T cd02425 46 LSYLKQLLEEYGFKCKVYKI--SFK---KNLYPLKLPVIIFWNNNHFVVLEKIKKNKVTIVDPAIGR-IKISIDEFLE 117 (126)
T ss_pred HHHHHHHHHHCCCcceEEEE--chH---HHHhhCCCCEEEEEcCCcEEEEEEEECCEEEEEcCCCCC-EEECHHHHHh
Confidence 35677888899999877542 221 2344567788776643 5667777766653 4678877754
No 169
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=22.60 E-value=4.9e+02 Score=22.25 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHCCC--eEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 162 ESLSVAGI--SHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 162 ~~LR~~Gi--~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+-+.+.|+ .+.+.+.+..+++.|. -.|+|..++||.+|+|.-+.... ++-+++.+.|..++.
T Consensus 114 ~~~~~~~~~~~~~~~D~~~~~~~~~g---v~~~P~t~vid~~G~i~~~~~G~-----~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 114 SWLKELGNPYALSLFDGDGMLGLDLG---VYGAPETFLIDGNGIIRYRHAGD-----LNPRVWESEIKPLWE 177 (185)
T ss_pred HHHHHcCCCCceEEEcCCccHHHhcC---CCcCCeEEEECCCceEEEEEecC-----CCHHHHHHHHHHHHH
Confidence 33444454 3334444667776664 46899999999989776655542 234455555555443
No 170
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=21.83 E-value=3.4e+02 Score=24.26 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCC--EEEEEcCCCcEEE
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVP--CAITVDSTSSVTI 206 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiP--y~IiIG~~gtVTL 206 (287)
..+...+..++|++.|+.+.+-. +|+...-...++.+|.+ ..-+|..+|.+..
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaT-GR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~ 75 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTT-GRPYAGVHRYLKELHMEQPGDYCITNNGALVQ 75 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEec-CCChHHHHHHHHHhCCCCCCCeEEEcCCeEEE
Confidence 33556777888999999998876 88888777777888873 1123344676544
No 171
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=21.82 E-value=3.7e+02 Score=21.79 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 167 AGISHKIDITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
.|.-+.++..+-++..|.+.|...|+..+|+.+.
T Consensus 39 ~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~ 72 (117)
T cd04813 39 DGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDD 72 (117)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 4667778876789999999999999999999987
No 172
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=21.78 E-value=3.6e+02 Score=22.74 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHCCCe---EEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 163 SLSVAGIS---HKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 163 ~LR~~Gi~---v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+.+.|+. +..| .++.++++|. -.|+|..++||.+|+|.-+ .+| .++-+++.+.+.+.+
T Consensus 110 ~~~~~~~~f~~v~~D-~~~~~~~~~~---v~~~P~~~~id~~G~i~~~--~~G---~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 110 FLKELGNPYQAILID-PNGKLGLDLG---VYGAPETFLVDGNGVILYR--HAG---PLNNEVWTEGFLPAM 171 (173)
T ss_pred HHHHcCCCCceEEEC-CCCchHHhcC---CeeCCeEEEEcCCceEEEE--Eec---cCCHHHHHHHHHHHh
Confidence 34455554 3344 4677888775 3689999999988875533 333 244566666665543
No 173
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=21.60 E-value=2.3e+02 Score=25.72 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHhHH--------cCCCEEEEEcC-CCcEEEEECCCCCeeeEeHHHH-HHHHHHHhcCCCChHHHhccCCC
Q 042110 176 TGASIGKRYARTDE--------LGVPCAITVDS-TSSVTIRERDSKDQMRVHVDDV-ASIVKALTDGQRTWEDVWANSPF 245 (287)
Q Consensus 176 s~~SIGKr~k~Ade--------iGiPy~IiIG~-~gtVTLRdrdt~~Q~~V~leel-~~~l~~l~~~~~~w~~~~~~~p~ 245 (287)
..-|+++-.+++.+ .--..+|++|. -|...|-+--...-..+.+.+- .+.|.+.=.+-.+++++..+.|.
T Consensus 60 ppVsLSrI~r~~k~~d~~~~~~~~~k~~VVvGkVtdd~rl~~vPkvtVaALrfS~tAr~rI~kAGGe~lT~dQLa~~~Pk 139 (198)
T PTZ00195 60 APISLSRIAVVMKRKAVFTAKGKKAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPT 139 (198)
T ss_pred CceeHHHHHHHHhccccccccCCCCcEEEEEeeEcCCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCC
Confidence 34567766666632 22348899997 2222222211222233344443 23343333355779999998886
Q ss_pred CCCCCcccccccccCCCccceeeeeeeecCCCCC--ceeee
Q 042110 246 PIPNPPNLLRNEMSNGGENFNLWGTVWAASPHSH--PYILS 284 (287)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 284 (287)
++....++ ---+.-|-+.-|| -..-|||| ||+.|
T Consensus 140 --G~ntvLlr-g~r~~Rea~khfG--apg~p~s~~kP~v~s 175 (198)
T PTZ00195 140 --GKNTYLLR-GRKSGRESVRHFG--ASGVPGSHSKPYATN 175 (198)
T ss_pred --CCCeEEEE-CCCchhHHHHhcC--CCCCCCCCCCCceec
Confidence 33333333 2335567788888 24458887 88876
No 174
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=21.37 E-value=59 Score=33.68 Aligned_cols=30 Identities=13% Similarity=-0.058 Sum_probs=22.6
Q ss_pred cccchhhccCC-CeEEEEecCCCeEEEEEEE
Q 042110 2 VGMAASEKSGV-ALVAQEKFSEPREVEKLVI 31 (287)
Q Consensus 2 ~~~~Hs~~s~~-~l~~~~~~~eP~~~~~~~~ 31 (287)
.|++||++||+ +|+|...++++.......+
T Consensus 272 DL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~ 302 (539)
T PRK14894 272 DLGSHSKDQEQLNLTARVNPNEDSTARLTYF 302 (539)
T ss_pred CHHHHhhhcccCCceeeeccccCCCceEEEE
Confidence 48999999997 9999877777655554443
No 175
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=21.16 E-value=72 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.4
Q ss_pred eceEeecceehhHHHHHHHHh
Q 042110 94 TPSVIEPSSGIDRIIYCLCEH 114 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~ 114 (287)
.|..|+.++|++|++..|+..
T Consensus 280 LP~TiGgGIGqsRL~M~LL~k 300 (327)
T PRK05425 280 LPLTIGGGIGQSRLCMLLLQK 300 (327)
T ss_pred CCCcccccccHHHHHHHHhcc
Confidence 688889999999999988764
No 176
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=21.07 E-value=3.5e+02 Score=26.31 Aligned_cols=103 Identities=13% Similarity=0.119 Sum_probs=63.7
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEe
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVH 218 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~ 218 (287)
|.++.+.--. .=++|-++..-|-=.||+..+=.-+-=..+.++..+-.++|..++= |+| .+.
T Consensus 88 ~L~l~LyQye----tCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~-------------Geq-m~d 149 (370)
T KOG3029|consen 88 PLDLVLYQYE----TCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIR-------------GEQ-MVD 149 (370)
T ss_pred CceEEEEeec----cCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEec-------------cce-ech
Confidence 4555554332 2356777777777777765544434445666666666777765432 455 556
Q ss_pred HHHHHHHHHHHhc-CCCChHHHhccCCCCCC-CCccccccccc
Q 042110 219 VDDVASIVKALTD-GQRTWEDVWANSPFPIP-NPPNLLRNEMS 259 (287)
Q Consensus 219 leel~~~l~~l~~-~~~~w~~~~~~~p~~~~-~~~~~~~~~~~ 259 (287)
-+-+++.|...++ ...+-+++.+-||+.+. ++..|..|+.-
T Consensus 150 SsvIIs~laTyLq~~~q~l~eiiq~yPa~~~~ne~GK~v~~~~ 192 (370)
T KOG3029|consen 150 SSVIISLLATYLQDKRQDLGEIIQMYPATSFFNEDGKEVNDIL 192 (370)
T ss_pred hHHHHHHHHHHhccCCCCHHHHHHhccccccccccccchhhcc
Confidence 6667777777664 45557889999998544 45555556553
No 177
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=20.68 E-value=76 Score=25.92 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.7
Q ss_pred hhhccCHHHHHhHHHhhcc
Q 042110 39 ALEAMNEKEALGMKATLES 57 (287)
Q Consensus 39 ~l~~l~~~~~~~~~~~l~~ 57 (287)
.|++|+++|.++|.+++++
T Consensus 86 Rle~l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIEE 104 (104)
T ss_pred HHHhCCHHHHHHHHHHhcC
Confidence 7899999999999998863
No 178
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=20.64 E-value=1.7e+02 Score=28.81 Aligned_cols=125 Identities=17% Similarity=0.287 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCC-------CHHHHHHHhHHcCCCEEEEEcC--CC--cEEEEECCCCCeeeEeHHH
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGA-------SIGKRYARTDELGVPCAITVDS--TS--SVTIRERDSKDQMRVHVDD 221 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~-------SIGKr~k~AdeiGiPy~IiIG~--~g--tVTLRdrdt~~Q~~V~lee 221 (287)
......+|.+...+.|+++.+|-+.. |+. .+.+..++|+- .|=+|. .+ .+++- .+.-++.++.+.
T Consensus 47 ~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~-~l~~f~e~G~~-glRlD~gfS~eei~~ms--~~~lkieLN~S~ 122 (360)
T COG3589 47 YFHRFKELLKEANKLGLRVIVDVNPSILKELNISLD-NLSRFQELGVD-GLRLDYGFSGEEIAEMS--KNPLKIELNAST 122 (360)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChH-HHHHHHHhhhh-heeecccCCHHHHHHHh--cCCeEEEEchhh
Confidence 45778889999999999999998543 222 36677777653 445554 11 11110 111456677777
Q ss_pred HHHHHHHHhcCCCChHHHhc---cCCC-CCCCCc--ccccccc------------cCCCccceeeeeeeecCC------C
Q 042110 222 VASIVKALTDGQRTWEDVWA---NSPF-PIPNPP--NLLRNEM------------SNGGENFNLWGTVWAASP------H 277 (287)
Q Consensus 222 l~~~l~~l~~~~~~w~~~~~---~~p~-~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~------~ 277 (287)
+-+.+..++......+.+.. =||. +++.+- -+.+||. |+.|.+ .+||.+.-.-| |
T Consensus 123 it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~~~~~-g~r~~~~~GlpTlE~hR~ 201 (360)
T COG3589 123 ITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISSDGAE-GPRGPLYEGLPTLEAHRY 201 (360)
T ss_pred hHHHHHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCceEEEEecCCcC-CcccccccCccchHHhcC
Confidence 76666666664444443322 2344 333221 1233331 233333 79999884433 6
Q ss_pred CCcee
Q 042110 278 SHPYI 282 (287)
Q Consensus 278 ~~~~~ 282 (287)
.||+.
T Consensus 202 ~~p~~ 206 (360)
T COG3589 202 VEPFV 206 (360)
T ss_pred CCHHH
Confidence 66653
No 179
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.34 E-value=3e+02 Score=21.61 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCe--EEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 159 VISESLSVAGIS--HKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 159 ~Ia~~LR~~Gi~--v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
.+.+.+.+.|+. +..|. ..++.++|. -.++|..++||.+|.|.-+.
T Consensus 75 ~~~~~~~~~~~~~p~~~D~-~~~~~~~~~---v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 75 NVKSAVLRYGITYPVANDN-DYATWRAYG---NQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred HHHHHHHHcCCCCCEEECC-chHHHHHhC---CCcCCeEEEECCCCcEEEEE
Confidence 444555555544 44443 566766664 36899999999888776543
No 180
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=20.24 E-value=4.7e+02 Score=21.12 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHCCCeEEEeCCCC--CHH--------HHHHHhHHc--CCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 163 SLSVAGISHKIDITGA--SIG--------KRYARTDEL--GVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 163 ~LR~~Gi~v~vD~s~~--SIG--------Kr~k~Adei--GiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
.|....+.+.+...+. +.+ ..++..=.+ +---+|.||.||.|.+|. ...++.++|.+.|..
T Consensus 38 ~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~-----~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 38 GLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRW-----PEPIDPEELFDTIDA 110 (118)
T ss_pred ccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEec-----CCCCCHHHHHHHHhC
Confidence 4566667776664322 211 244444442 223478889999999882 235677777776653
No 181
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=20.14 E-value=4.1e+02 Score=20.37 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----------CCcEEEEECCCCCeeeEeHHHHHH
Q 042110 158 KVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----------TSSVTIRERDSKDQMRVHVDDVAS 224 (287)
Q Consensus 158 ~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----------~gtVTLRdrdt~~Q~~V~leel~~ 224 (287)
..+.+.+++.|+++..-.. ++ .+-+.+-.|.++...+ ++.+.|.+-+.+....++.+++.+
T Consensus 42 ~~l~~~a~~~Gl~~~~~~~--~~----~~l~~~~lP~I~~~~~g~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~el~~ 112 (121)
T cd02417 42 TELLLAAKSLGLKAKAVRQ--PV----ERLARLPLPALAWDDDGGHFILAKLDGQKYLIQDPISQRPEVLSREEFEA 112 (121)
T ss_pred HHHHHHHHHcCCeeEEEec--CH----HHhccCCCCEEEEccCCCEEEEEEEcCCCEEEECCCcCCCeecCHHHHHh
Confidence 4566778889998877542 22 2233445677665532 556777776555455677777654
No 182
>PRK05568 flavodoxin; Provisional
Probab=20.10 E-value=3.3e+02 Score=21.87 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=26.2
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT 176 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s 176 (287)
++.|+..+..-.-...|..|++.+++.|+.+++-+-
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 356666655434567899999999999998875543
Done!