Query 042110
Match_columns 287
No_of_seqs 301 out of 1721
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zt5_A Glycyl-tRNA synthetase; 100.0 1.1E-41 3.7E-46 349.1 18.4 246 2-252 414-678 (693)
2 3ikl_A DNA polymerase subunit 100.0 1.1E-30 3.8E-35 256.2 11.9 143 89-232 294-449 (459)
3 1g5h_A Mitochondrial DNA polym 100.0 1.5E-29 5.3E-34 248.2 12.7 153 90-242 286-449 (454)
4 3uh0_A Threonyl-tRNA synthetas 99.9 5.4E-26 1.8E-30 223.2 16.5 159 60-232 271-458 (460)
5 1ati_A Glycyl-tRNA synthetase; 99.9 3.5E-25 1.2E-29 219.7 16.1 141 89-231 349-504 (505)
6 1qf6_A THRRS, threonyl-tRNA sy 99.9 2.8E-24 9.5E-29 218.6 19.2 158 60-233 465-635 (642)
7 1evl_A Threonyl-tRNA synthetas 99.9 2.3E-23 8E-28 199.9 18.5 156 61-232 225-393 (401)
8 1nyr_A Threonyl-tRNA synthetas 99.9 1.6E-23 5.6E-28 212.6 17.8 159 60-233 471-642 (645)
9 2j3l_A Prolyl-tRNA synthetase; 99.9 4.6E-23 1.6E-27 206.0 18.9 138 86-234 427-568 (572)
10 2i4l_A Proline-tRNA ligase; al 99.9 3.5E-23 1.2E-27 202.5 14.0 130 87-226 323-457 (458)
11 3ial_A Prolyl-tRNA synthetase; 99.9 1.1E-22 3.6E-27 202.5 16.2 143 68-222 232-398 (518)
12 4hvc_A Bifunctional glutamate/ 99.9 9.1E-23 3.1E-27 203.1 15.5 152 68-231 239-413 (519)
13 1nj1_A PROR, proline-tRNA synt 99.9 1.6E-22 5.6E-27 200.3 16.3 134 87-231 273-413 (501)
14 1hc7_A Prolyl-tRNA synthetase; 99.9 3.3E-22 1.1E-26 197.1 17.0 133 87-231 246-386 (477)
15 1nj8_A Proline-tRNA synthetase 99.9 8.5E-22 2.9E-26 193.2 16.4 131 88-231 242-380 (459)
16 3a32_A Probable threonyl-tRNA 99.8 4.9E-21 1.7E-25 187.9 9.5 143 88-245 300-465 (471)
17 1qe0_A Histidyl-tRNA synthetas 99.8 7.4E-20 2.5E-24 175.6 13.1 121 88-227 295-419 (420)
18 3net_A Histidyl-tRNA synthetas 99.8 5.3E-20 1.8E-24 180.4 10.7 121 90-230 339-464 (465)
19 1htt_A Histidyl-tRNA synthetas 99.8 2.6E-19 8.9E-24 172.1 14.7 120 92-230 297-422 (423)
20 1h4v_B Histidyl-tRNA synthetas 99.8 4.2E-19 1.4E-23 170.6 15.4 119 92-230 298-420 (421)
21 4e51_A Histidine--tRNA ligase; 99.8 5.2E-19 1.8E-23 173.6 14.2 122 89-230 322-458 (467)
22 4g85_A Histidine-tRNA ligase, 99.8 1.3E-18 4.4E-23 172.2 14.9 126 91-232 385-515 (517)
23 4g84_A Histidine--tRNA ligase, 99.8 1.1E-18 3.7E-23 169.3 12.9 126 91-232 332-462 (464)
24 1wu7_A Histidyl-tRNA synthetas 99.8 4.3E-18 1.5E-22 164.6 15.0 119 92-231 303-426 (434)
25 1v95_A Nuclear receptor coacti 99.6 8.2E-16 2.8E-20 127.6 10.9 93 138-232 7-107 (130)
26 3lc0_A Histidyl-tRNA synthetas 99.6 1.2E-15 4.1E-20 149.6 11.5 111 93-222 332-446 (456)
27 3od1_A ATP phosphoribosyltrans 97.0 0.001 3.5E-08 63.8 7.2 81 94-200 311-391 (400)
28 2dq0_A Seryl-tRNA synthetase; 95.0 0.0084 2.9E-07 58.6 2.1 45 89-143 394-439 (455)
29 2dq3_A Seryl-tRNA synthetase; 94.3 0.019 6.4E-07 55.6 2.6 48 90-146 374-423 (425)
30 1wle_A Seryl-tRNA synthetase; 90.6 0.12 4.1E-06 51.1 2.9 50 87-145 422-473 (501)
31 3vbb_A Seryl-tRNA synthetase, 90.0 0.054 1.8E-06 53.9 -0.2 52 89-150 417-473 (522)
32 1ses_A Seryl-tRNA synthetase; 87.9 0.21 7.2E-06 48.2 2.3 45 88-141 367-412 (421)
33 3lss_A Seryl-tRNA synthetase; 87.5 0.18 6.3E-06 49.6 1.7 50 90-149 419-471 (484)
34 3err_A Fusion protein of micro 85.1 0.2 6.7E-06 49.9 0.5 45 87-140 475-520 (536)
35 3qne_A Seryl-tRNA synthetase, 78.6 0.35 1.2E-05 47.7 -0.5 50 90-149 393-446 (485)
36 3keb_A Probable thiol peroxida 70.2 9.1 0.00031 33.5 6.6 65 168-232 107-177 (224)
37 1yqh_A DUF77, IG hypothetical 69.9 18 0.00061 28.3 7.5 67 140-211 10-87 (109)
38 1psq_A Probable thiol peroxida 67.8 16 0.00055 28.9 7.1 61 168-228 99-162 (163)
39 2ibo_A Hypothetical protein SP 66.7 11 0.00038 29.3 5.6 58 140-198 5-73 (104)
40 1lxj_A YBL001C, hypothetical 1 66.6 42 0.0014 25.8 9.4 83 140-230 8-102 (104)
41 3gkn_A Bacterioferritin comigr 66.3 8.5 0.00029 30.2 5.1 61 167-230 92-161 (163)
42 3lwa_A Secreted thiol-disulfid 64.8 18 0.0006 28.9 6.9 58 168-231 124-181 (183)
43 4gqc_A Thiol peroxidase, perox 63.5 15 0.0005 29.6 6.1 63 168-231 91-160 (164)
44 3ha9_A Uncharacterized thiored 63.1 24 0.00081 27.5 7.2 52 168-231 112-164 (165)
45 1prx_A HORF6; peroxiredoxin, h 60.2 23 0.00078 30.3 7.1 63 167-231 98-169 (224)
46 2epi_A UPF0045 protein MJ1052; 59.3 19 0.00066 27.6 5.8 66 140-211 9-85 (100)
47 1m5w_A Pyridoxal phosphate bio 59.2 19 0.00064 32.3 6.4 58 138-197 87-154 (243)
48 2cja_A Seryl-tRNA synthetase; 59.2 2.3 8E-05 42.1 0.5 22 94-115 476-497 (522)
49 2yzh_A Probable thiol peroxida 57.7 13 0.00046 29.5 4.9 61 168-229 104-170 (171)
50 1vk8_A Hypothetical protein TM 57.6 17 0.00057 28.5 5.1 66 140-211 18-94 (106)
51 3gk0_A PNP synthase, pyridoxin 56.2 18 0.00062 33.0 5.8 56 138-195 115-180 (278)
52 3ixr_A Bacterioferritin comigr 54.3 26 0.00089 28.3 6.2 61 167-230 108-177 (179)
53 2lrn_A Thiol:disulfide interch 53.9 55 0.0019 24.9 7.8 37 188-232 106-142 (152)
54 3raz_A Thioredoxin-related pro 53.8 70 0.0024 24.3 8.8 70 159-234 70-143 (151)
55 3hcz_A Possible thiol-disulfid 52.9 65 0.0022 23.9 8.0 64 158-230 80-145 (148)
56 4g2e_A Peroxiredoxin; redox pr 52.6 26 0.00089 27.7 5.8 61 168-229 88-156 (157)
57 1xcc_A 1-Cys peroxiredoxin; un 52.2 29 0.001 29.5 6.4 89 140-230 66-165 (220)
58 2qv7_A Diacylglycerol kinase D 50.6 14 0.00048 33.6 4.3 51 153-203 40-92 (337)
59 2v2g_A Peroxiredoxin 6; oxidor 49.6 30 0.001 29.9 6.1 61 168-230 95-164 (233)
60 2f9s_A Thiol-disulfide oxidore 49.4 69 0.0024 24.2 7.7 57 167-232 83-139 (151)
61 1xvw_A Hypothetical protein RV 48.8 34 0.0012 26.4 5.8 62 167-229 93-158 (160)
62 1u0t_A Inorganic polyphosphate 48.4 14 0.00047 33.4 3.8 97 140-237 5-136 (307)
63 3p7x_A Probable thiol peroxida 48.0 42 0.0014 26.4 6.3 61 168-228 102-165 (166)
64 3pfn_A NAD kinase; structural 47.8 29 0.00099 32.7 6.0 105 131-237 32-169 (365)
65 3or5_A Thiol:disulfide interch 47.8 90 0.0031 23.7 10.3 58 168-232 92-152 (165)
66 2l5o_A Putative thioredoxin; s 47.2 88 0.003 23.5 8.1 65 160-233 77-143 (153)
67 1z0s_A Probable inorganic poly 46.8 19 0.00065 32.6 4.5 51 139-202 29-79 (278)
68 3pzy_A MOG; ssgcid, seattle st 44.9 41 0.0014 27.7 5.9 63 137-200 5-75 (164)
69 3qay_A Endolysin; amidase A/B 44.7 67 0.0023 26.7 7.3 52 149-200 27-86 (180)
70 3fkf_A Thiol-disulfide oxidore 44.4 66 0.0023 23.9 6.7 37 187-231 110-146 (148)
71 3o6c_A PNP synthase, pyridoxin 43.5 21 0.00073 32.2 4.2 56 138-195 86-149 (260)
72 3gl3_A Putative thiol:disulfid 43.0 1E+02 0.0035 23.1 9.7 66 162-234 78-145 (152)
73 3ztl_A Thioredoxin peroxidase; 43.0 16 0.00054 31.0 3.1 62 166-229 132-196 (222)
74 3u5r_E Uncharacterized protein 43.0 75 0.0025 26.4 7.5 64 167-234 123-190 (218)
75 1mkz_A Molybdenum cofactor bio 42.2 72 0.0025 26.2 7.1 63 138-200 9-78 (172)
76 1lxn_A Hypothetical protein MT 41.2 29 0.001 26.5 4.1 80 140-227 4-96 (99)
77 1jfu_A Thiol:disulfide interch 40.4 50 0.0017 26.1 5.7 60 169-232 121-181 (186)
78 3drn_A Peroxiredoxin, bacterio 39.8 64 0.0022 25.1 6.2 59 168-231 87-149 (161)
79 1we0_A Alkyl hydroperoxide red 38.8 39 0.0013 27.1 4.9 64 166-231 91-157 (187)
80 2c0d_A Thioredoxin peroxidase 38.8 43 0.0015 28.4 5.3 62 168-231 121-184 (221)
81 2bmx_A Alkyl hydroperoxidase C 38.0 52 0.0018 26.6 5.6 65 166-232 105-171 (195)
82 2i2c_A Probable inorganic poly 37.5 24 0.00082 31.2 3.6 76 142-235 3-96 (272)
83 3a2v_A Probable peroxiredoxin; 37.2 79 0.0027 27.7 6.9 62 167-230 96-161 (249)
84 1jwq_A N-acetylmuramoyl-L-alan 37.1 81 0.0028 26.2 6.6 49 152-200 29-81 (179)
85 3fw2_A Thiol-disulfide oxidore 36.5 1.3E+02 0.0044 22.7 7.4 61 160-231 84-148 (150)
86 2bon_A Lipid kinase; DAG kinas 36.2 41 0.0014 30.4 5.0 48 155-202 44-93 (332)
87 3eyt_A Uncharacterized protein 35.8 88 0.003 23.7 6.4 65 160-232 83-153 (158)
88 1xzo_A BSSCO, hypothetical pro 35.6 1.2E+02 0.004 23.4 7.1 71 159-232 86-173 (174)
89 2an1_A Putative kinase; struct 35.2 17 0.00058 32.2 2.2 93 141-237 7-124 (292)
90 1nnh_A Asparaginyl-tRNA synthe 35.0 26 0.00088 31.7 3.4 18 95-113 257-274 (294)
91 2pjk_A 178AA long hypothetical 34.9 55 0.0019 27.2 5.2 63 138-200 14-90 (178)
92 2ywi_A Hypothetical conserved 34.9 1.5E+02 0.005 23.4 7.8 62 168-233 111-176 (196)
93 3lor_A Thiol-disulfide isomera 34.6 1.5E+02 0.005 22.4 7.8 55 169-232 96-156 (160)
94 3ne8_A N-acetylmuramoyl-L-alan 33.2 97 0.0033 27.0 6.8 49 152-200 31-83 (234)
95 3kcm_A Thioredoxin family prot 31.6 1.6E+02 0.0055 22.0 7.9 58 168-232 87-144 (154)
96 3kh7_A Thiol:disulfide interch 31.6 1.9E+02 0.0065 22.8 9.3 63 160-231 102-167 (176)
97 1n8j_A AHPC, alkyl hydroperoxi 31.2 80 0.0027 25.5 5.6 62 168-231 92-156 (186)
98 1zzo_A RV1677; thioredoxin fol 30.9 1.5E+02 0.0051 21.3 8.5 54 168-231 82-135 (136)
99 1uul_A Tryparedoxin peroxidase 30.4 82 0.0028 25.6 5.6 61 168-230 101-164 (202)
100 2i81_A 2-Cys peroxiredoxin; st 30.1 66 0.0022 26.9 5.0 62 167-230 116-179 (213)
101 3qpm_A Peroxiredoxin; oxidored 29.4 32 0.0011 29.7 2.9 61 167-229 141-204 (240)
102 4evm_A Thioredoxin family prot 29.3 1.4E+02 0.0048 21.3 6.3 62 158-228 72-136 (138)
103 3rfq_A Pterin-4-alpha-carbinol 29.1 70 0.0024 27.0 5.0 63 138-200 29-98 (185)
104 1zye_A Thioredoxin-dependent p 28.9 31 0.0011 29.1 2.7 62 168-231 121-185 (220)
105 3afo_A NADH kinase POS5; alpha 28.6 50 0.0017 31.2 4.3 95 139-237 41-176 (388)
106 3h16_A TIR protein; bacteria T 28.3 47 0.0016 26.6 3.6 59 139-199 20-82 (154)
107 2h01_A 2-Cys peroxiredoxin; th 27.5 68 0.0023 25.8 4.5 61 168-230 96-158 (192)
108 2cvb_A Probable thiol-disulfid 27.4 1.9E+02 0.0065 22.7 7.2 63 167-233 96-161 (188)
109 2h30_A Thioredoxin, peptide me 26.6 1.1E+02 0.0037 23.3 5.4 63 160-231 91-156 (164)
110 2pn8_A Peroxiredoxin-4; thiore 26.2 70 0.0024 26.6 4.5 61 168-230 113-176 (211)
111 2jsy_A Probable thiol peroxida 26.2 67 0.0023 24.9 4.1 63 168-230 101-166 (167)
112 3s40_A Diacylglycerol kinase; 25.7 90 0.0031 27.7 5.3 50 152-202 23-74 (304)
113 2kuc_A Putative disulphide-iso 25.6 1.9E+02 0.0066 20.9 8.8 69 159-232 54-122 (130)
114 3ia1_A THIO-disulfide isomeras 25.2 1.9E+02 0.0065 21.6 6.6 84 140-232 61-145 (154)
115 3a5y_A GENX, putative lysyl-tR 24.9 48 0.0017 30.7 3.4 31 95-136 313-343 (345)
116 1z7m_A ATP phosphoribosyltrans 24.9 33 0.0011 31.6 2.3 67 47-115 258-338 (344)
117 3rac_A Histidine-tRNA ligase; 24.3 34 0.0012 31.9 2.3 21 94-115 347-367 (373)
118 1y81_A Conserved hypothetical 23.9 1.7E+02 0.0057 23.0 6.1 52 138-194 68-119 (138)
119 1j5w_A Glycyl-tRNA synthetase 23.6 84 0.0029 28.7 4.6 44 70-113 137-182 (298)
120 2jwk_A Protein TOLR; periplasm 23.3 1.4E+02 0.0048 20.2 5.0 38 193-231 4-41 (74)
121 3mng_A Peroxiredoxin-5, mitoch 23.3 1.5E+02 0.005 24.0 5.8 83 140-229 79-173 (173)
122 3fk8_A Disulphide isomerase; A 23.3 1.5E+02 0.0052 21.8 5.5 71 159-229 55-131 (133)
123 1qmv_A Human thioredoxin perox 22.6 44 0.0015 27.2 2.4 61 168-230 99-162 (197)
124 1xov_A PLY protein, plypsa; al 22.5 1.6E+02 0.0055 27.1 6.4 49 152-200 38-92 (326)
125 1wyd_A Hypothetical aspartyl-t 22.1 48 0.0016 31.7 2.8 19 94-113 392-410 (429)
126 3p6l_A Sugar phosphate isomera 21.9 1.4E+02 0.0047 25.0 5.6 44 155-198 63-111 (262)
127 1y5e_A Molybdenum cofactor bio 21.8 1.5E+02 0.0051 24.0 5.6 63 138-200 12-81 (169)
128 3f6r_A Flavodoxin; FMN binding 21.6 1.5E+02 0.0051 22.7 5.3 35 141-175 3-37 (148)
129 2lja_A Putative thiol-disulfid 20.9 1.5E+02 0.0051 22.1 5.1 53 173-233 93-145 (152)
130 3tjj_A Peroxiredoxin-4; thiore 20.8 57 0.0019 28.5 2.9 61 167-229 155-218 (254)
131 3ju3_A Probable 2-oxoacid ferr 20.7 1.2E+02 0.0042 23.2 4.6 57 140-200 14-73 (118)
132 3ewl_A Uncharacterized conserv 20.1 1.5E+02 0.005 21.9 4.9 59 161-229 79-139 (142)
No 1
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1.1e-41 Score=349.08 Aligned_cols=246 Identities=38% Similarity=0.603 Sum_probs=163.2
Q ss_pred cccchhhccCCCeEEEEecCCCeEEEEEEEeeechhh-------------hhhccCHHHHHhHHHhhccCCeEEEEEeeC
Q 042110 2 VGMAASEKSGVALVAQEKFSEPREVEKLVIAPVKKEL-------------ALEAMNEKEALGMKATLESKGEVEFYVRKL 68 (287)
Q Consensus 2 ~~~~Hs~~s~~~l~~~~~~~eP~~~~~~~~~~~~~~~-------------~l~~l~~~~~~~~~~~l~~~~~~~~~v~~~ 68 (287)
.|++|+++||.+|.++.+|++|+.++.+.+.+|++++ +|...++++.+++.+.|...|.+++++ +
T Consensus 414 dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~v--d 491 (693)
T 2zt5_A 414 DLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIET--E 491 (693)
T ss_dssp HHHHHHHHHTCCCCEEEC--------------------------------------------------------------
T ss_pred HHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEE--C
Confidence 3679999999999999999999999999999998877 466666777888888898888888887 5
Q ss_pred CeeEEeecceeeEeeeeecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec
Q 042110 69 GKNVCIKKNMLLISKEKKKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV 148 (287)
Q Consensus 69 g~~~~i~~~~v~~~~~~~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~ 148 (287)
|..|++..+++.+..+...+.|.+++|+||++||||||++++|+|++++.+ ++++.|.++.||+|+||+||+|+|++
T Consensus 492 Gt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~---~~~~~r~g~~~P~~lAP~qV~Vipl~ 568 (693)
T 2zt5_A 492 GKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVR---EGDEQRTFFSFPAVVAPFKCSVLPLS 568 (693)
T ss_dssp --------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEEC---SSTTCCEEECCCTTTSSCSEEEEESC
T ss_pred CEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhcccc---ccccccccccCCCCCCCCeEEEEEec
Confidence 789999988777665555678999999999999999999999999988754 44556778999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC------CCcEEEEECCCCCeeeEeHHHH
Q 042110 149 QNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS------TSSVTIRERDSKDQMRVHVDDV 222 (287)
Q Consensus 149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~------~gtVTLRdrdt~~Q~~V~leel 222 (287)
+++++..+|.+|++.||++||+|++|++++|+|+||++||++|+||+||||+ +|+|+||+|+|++|.+++++++
T Consensus 569 ~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el 648 (693)
T 2zt5_A 569 QNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISEL 648 (693)
T ss_dssp CSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCCEEEEETTTH
T ss_pred CcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCceEEEeHHHH
Confidence 6556889999999999999999999999999999999999999999999996 6899999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHhccCCCCCCCCcc
Q 042110 223 ASIVKALTDGQRTWEDVWANSPFPIPNPPN 252 (287)
Q Consensus 223 ~~~l~~l~~~~~~w~~~~~~~p~~~~~~~~ 252 (287)
++.|.+++.+..+|+++.++||.|++|+..
T Consensus 649 ~~~l~~~l~~~~~w~~~~~~~~~~~~~~~~ 678 (693)
T 2zt5_A 649 PSIVQDLANGNITWADVEARYPLFEGQETG 678 (693)
T ss_dssp HHHHHHHHTTSSCHHHHHHHSCBCC-----
T ss_pred HHHHHHHHhCcccHHHHHHhccchhccccc
Confidence 999999999999999999999999998544
No 2
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=256.21 Aligned_cols=143 Identities=18% Similarity=0.280 Sum_probs=124.2
Q ss_pred cC-cEEeceEeecceehhHHHHHHHHhccccCCC---CCCCcccccccCCCCCCCceEEEEEecC--ChhHHHHHHHHHH
Q 042110 89 FQ-RVFTPSVIEPSSGIDRIIYCLCEHCFYRRPS---KAGDEQLNVFRFPPLVAPIKCTVFTLVQ--NQQYEEVAKVISE 162 (287)
Q Consensus 89 ~~-~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~---~~~d~~r~~l~lP~~iAP~kV~Ilpl~~--~~e~~~~A~~Ia~ 162 (287)
+| ++++|+||++|+|++|+++|++|++|+.+.. .+++++|.++.||+|+||+||+|+ +.. ++++.++|.+|++
T Consensus 294 dg~~k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~~e~~~~~A~~L~~ 372 (459)
T 3ikl_A 294 DGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGPTLELRQVCQGLFN 372 (459)
T ss_dssp SSSCBCCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCCSTTHHHHHHHHHH
T ss_pred CCCeeeeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCCCHHHHHHHHHHHH
Confidence 44 6899999999999999999999999985310 013568999999999999999999 653 3678999999999
Q ss_pred HHHHCCCeEE--EeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 163 SLSVAGISHK--IDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 163 ~LR~~Gi~v~--vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
.||++||+|+ +|++ +.++|+||++||++|+||+||||+ +|+||||+|+|++|.+++++++++.|.+++.+
T Consensus 373 ~Lr~~GIrV~~d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 373 ELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp HHHHTSCCEECGGGSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred HHHHCCCeEEEeecCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 9999999999 8887 799999999999999999999998 89999999999999999999999999987764
No 3
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.96 E-value=1.5e-29 Score=248.16 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=132.5
Q ss_pred CcEEeceEeecceehhHHHHHHHHhccccCCC---CCCCcccccccCCCCCCCceEEEE-EecCChhHHHHHHHHHHHHH
Q 042110 90 QRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPS---KAGDEQLNVFRFPPLVAPIKCTVF-TLVQNQQYEEVAKVISESLS 165 (287)
Q Consensus 90 ~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~---~~~d~~r~~l~lP~~iAP~kV~Il-pl~~~~e~~~~A~~Ia~~LR 165 (287)
+++++|+||++|+|++|+++++++++|..... ..+|++|.+|+||+|+||+||+|+ |+++++++.++|.+|++.||
T Consensus 286 ~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr 365 (454)
T 1g5h_A 286 RKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELL 365 (454)
T ss_dssp TEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHH
Confidence 55899999999999999999999999873100 013468899999999999999999 65422578899999999999
Q ss_pred HCCCeEE--EeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCCCChHH
Q 042110 166 VAGISHK--IDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTDGQRTWED 238 (287)
Q Consensus 166 ~~Gi~v~--vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~~~w~~ 238 (287)
++|++|+ +|++ +.++|+||++||++|+||+||||+ +|+|+||+|+|++|.+++++++++.|.+++.+..+|+.
T Consensus 366 ~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~~~~~~~ 445 (454)
T 1g5h_A 366 ENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNVAA 445 (454)
T ss_dssp HTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHG
T ss_pred HCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhccchhhh
Confidence 9999996 9996 899999999999999999999998 89999999999999999999999999999999999986
Q ss_pred Hhcc
Q 042110 239 VWAN 242 (287)
Q Consensus 239 ~~~~ 242 (287)
+..+
T Consensus 446 ~~~~ 449 (454)
T 1g5h_A 446 ALDH 449 (454)
T ss_dssp GGTT
T ss_pred hhcc
Confidence 6544
No 4
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=99.94 E-value=5.4e-26 Score=223.25 Aligned_cols=159 Identities=17% Similarity=0.224 Sum_probs=139.2
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecc-e-ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPS-S-GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S-~-GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|+.+++.+.+++|...+ .+.+|++.+|+||+++ | |++|+|++|+|+. .
T Consensus 271 kid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~--------------~ 336 (460)
T 3uh0_A 271 KLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSN--------------E 336 (460)
T ss_dssp EEEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHH--------------T
T ss_pred eEEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHc--------------C
Confidence 78877765 688898888777664333 5678999999999885 6 5999999999972 1
Q ss_pred ccCCCCCCCceEEEEEecCC-hhHHHHHHHHHHHHHHC--------------CCeEEEeCCCCCHHHHHHHhHHcCCCEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQN-QQYEEVAKVISESLSVA--------------GISHKIDITGASIGKRYARTDELGVPCA 195 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~-~e~~~~A~~Ia~~LR~~--------------Gi~v~vD~s~~SIGKr~k~AdeiGiPy~ 195 (287)
+.||+|+||+||+|+|++++ ++...+|.+|++.||++ ||+|++|+++.++|+||++|+++|+||+
T Consensus 337 g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ 416 (460)
T 3uh0_A 337 GRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYL 416 (460)
T ss_dssp TCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 36899999999999999874 34789999999999998 9999999999999999999999999999
Q ss_pred EEEcC----CCcEEEEECCCCC-eeeEeHHHHHHHHHHHhcC
Q 042110 196 ITVDS----TSSVTIRERDSKD-QMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 196 IiIG~----~gtVTLRdrdt~~-Q~~V~leel~~~l~~l~~~ 232 (287)
||||+ +|+|+||+|++++ |..++++++++.|.++++.
T Consensus 417 ivvG~~E~~~g~Vtvr~r~~~e~q~~v~~~el~~~l~~~~~~ 458 (460)
T 3uh0_A 417 IIVGDEEVQLQKYNIRERDNRKSFEKLTMSQIWEKFIELEKN 458 (460)
T ss_dssp EEECHHHHHHTCEEEEEGGGTTSCEEECHHHHHHHHHHHHHT
T ss_pred EEEcchhhhCCeEEEEECCCCceeEEeeHHHHHHHHHHHHHh
Confidence 99998 8999999999999 9999999999999988764
No 5
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.93 E-value=3.5e-25 Score=219.67 Aligned_cols=141 Identities=37% Similarity=0.580 Sum_probs=122.9
Q ss_pred cCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecC-ChhHHHHHHHHHHHHHHC
Q 042110 89 FQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQ-NQQYEEVAKVISESLSVA 167 (287)
Q Consensus 89 ~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~ 167 (287)
.+++++|+||++|+|++|++++|+|+++..++. .+++++.++.||+++||++|+|+|+++ ++++..+|.+|++.||++
T Consensus 349 g~~~y~p~vig~s~GieRli~alle~~~~~~~~-~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~ 427 (505)
T 1ati_A 349 TGKWFVPYVIEPSAGVDRGVLALLAEAFTREEL-PNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLAL 427 (505)
T ss_dssp SCCEECCEEEEEEEEHHHHHHHHHHHHEEEEEC-TTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTT
T ss_pred CCeeecceEEEEeeEHHHHHHHHHHHHhhhccc-ccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhcc
Confidence 345679999999999999999999997753210 012235788999999999999999986 457889999999999999
Q ss_pred C-CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC---C----------CcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 G-ISHKIDITGASIGKRYARTDELGVPCAITVDS---T----------SSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 G-i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~---~----------gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
| ++|.+|++ +++|+||++||++|+||+||||+ + |+||||+|+|++|.+++++++++.|.+++.
T Consensus 428 G~i~v~~D~~-~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l~ 504 (505)
T 1ati_A 428 GLGRVLYEDT-GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLR 504 (505)
T ss_dssp CSSCEEECCC-SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHHC
T ss_pred CCEEEEECCC-CCHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHHHHHHHHhc
Confidence 9 99999998 89999999999999999999996 3 699999999999999999999999987654
No 6
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.92 E-value=2.8e-24 Score=218.58 Aligned_cols=158 Identities=22% Similarity=0.307 Sum_probs=136.8
Q ss_pred eEEEEEee-CCeeEEeecceeeEeeee------ecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKEK------KKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~~------~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|..|.+++.+++|.... .+.+|++.+|.|++.++ |++|++++|+|+.. +
T Consensus 465 k~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~--------~----- 531 (642)
T 1qf6_A 465 KIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFA--------G----- 531 (642)
T ss_dssp EEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT--------T-----
T ss_pred cccEEEEccCCceEEeeeEEEeccCCccCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhc--------C-----
Confidence 56666654 477787777666664111 46688899999999776 89999999999831 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
.||+|+||+||+|+|+++ ++..+|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||+ +|+|+|
T Consensus 532 -~~P~~laP~qv~vipi~~--~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~v 608 (642)
T 1qf6_A 532 -FFPTWLAPVQVVIMNITD--SQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAV 608 (642)
T ss_dssp -CCCTTTCSSCEEEEESSH--HHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEE
T ss_pred -CCCcccCCceEEEEEeCH--HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEE
Confidence 689999999999999974 7889999999999999999999999999999999999999999999998 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
|+|++++|..++++++++.|.+++.++
T Consensus 609 r~r~~~~~~~v~~~e~~~~l~~~~~~~ 635 (642)
T 1qf6_A 609 RTRRGKDLGSMDVNEVIEKLQQEIRSR 635 (642)
T ss_dssp EESSSCEEEEECHHHHHHHHHHHHHTT
T ss_pred EECCCCceEEEEHHHHHHHHHHHHhhh
Confidence 999999999999999999998877654
No 7
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.91 E-value=2.3e-23 Score=199.86 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=130.0
Q ss_pred EEEEEee-CCeeEEeecceeeEee------eeecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCcccccc
Q 042110 61 VEFYVRK-LGKNVCIKKNMLLISK------EKKKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNVF 131 (287)
Q Consensus 61 ~~~~v~~-~g~~~~i~~~~v~~~~------~~~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~l 131 (287)
+++.+.+ .|..|.......+|.- .-.+.+|+..+|.|++.++ |++|++++|+|+...
T Consensus 225 ~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~-------------- 290 (401)
T 1evl_A 225 IEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG-------------- 290 (401)
T ss_dssp EEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT--------------
T ss_pred cCeEEEecCCCeEEeeeeeeccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCC--------------
Confidence 4554443 2666666654433330 1135678889999999776 999999999987321
Q ss_pred cCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEE
Q 042110 132 RFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIR 207 (287)
Q Consensus 132 ~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLR 207 (287)
.||++++|++|+|+|+++ +...+|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||+ +|+|+||
T Consensus 291 ~~p~~~ap~~v~vi~~~~--~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk 368 (401)
T 1evl_A 291 FFPTWLAPVQVVIMNITD--SQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVR 368 (401)
T ss_dssp CCCTTTCSSCEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEE
T ss_pred cCCCCCCCeEEEEEecCH--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEE
Confidence 479999999999999975 6789999999999999999999999899999999999999999999998 8999999
Q ss_pred ECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 208 ERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 208 drdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
+|+|++|..++++++++.|++++..
T Consensus 369 ~~~~~~q~~v~~~el~~~l~~~~~~ 393 (401)
T 1evl_A 369 TRRGKDLGSMDVNEVIEKLQQEIRS 393 (401)
T ss_dssp ETTSCEEEEEEHHHHHHHHHHHHHT
T ss_pred ECCCCceEEeeHHHHHHHHHHHHhh
Confidence 9999999999999999999877664
No 8
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.91 E-value=1.6e-23 Score=212.65 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=134.6
Q ss_pred eEEEEEee-CCeeEEeecceeeEeee------eecccCcEEeceEeecce--ehhHHHHHHHHhccccCCCCCCCccccc
Q 042110 60 EVEFYVRK-LGKNVCIKKNMLLISKE------KKKEFQRVFTPSVIEPSS--GIDRIIYCLCEHCFYRRPSKAGDEQLNV 130 (287)
Q Consensus 60 ~~~~~v~~-~g~~~~i~~~~v~~~~~------~~~~~~~~~~P~VIe~S~--GIeRii~aLlE~~~~~r~~~~~d~~r~~ 130 (287)
++++.+.+ .|..|++.+.+++|... -.+.+|++.+|+|||+++ |+||++++|+|+. . +
T Consensus 471 ki~~~~~d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~-~-------~----- 537 (645)
T 1nyr_A 471 KLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEET-K-------G----- 537 (645)
T ss_dssp EEEEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHH-T-------T-----
T ss_pred ccceehhhhhCchhhcceEEeecccccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHh-c-------C-----
Confidence 45555544 36677777666665411 145678899999999865 7999999999983 1 1
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEE
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTI 206 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTL 206 (287)
.||+|+||+||+|+|++ +++...+|.+|++.||++|++|++|+++.++|+||++|+++|+||+||||+ +|+|+|
T Consensus 538 -~~P~~lap~qv~vip~~-~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~v 615 (645)
T 1nyr_A 538 -AFPTWLAPKQVQIIPVN-VDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNV 615 (645)
T ss_dssp -CCCTTTCSSCEEEEESS-HHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEE
T ss_pred -CCCCCCCCceEEEEEcc-cHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEccchhhCCEEEE
Confidence 58999999999999997 236889999999999999999999999899999999999999999999998 899999
Q ss_pred EECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 207 RERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
|+|++++|..++++++++.|.+++..+
T Consensus 616 r~r~~~~~~~v~~~e~~~~l~~~~~~~ 642 (645)
T 1nyr_A 616 RQYGSQDQETVEKDEFIWNLVDEIRLK 642 (645)
T ss_dssp EETTSSCCCEEEHHHHHHHHHHHHHTT
T ss_pred EECCCCcEEEEEHHHHHHHHHHHHhhh
Confidence 999999999999999999998877653
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.90 E-value=4.6e-23 Score=206.03 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=121.0
Q ss_pred ecccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042110 86 KKEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV-QNQQYEEVAKVISESL 164 (287)
Q Consensus 86 ~~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~-~~~e~~~~A~~Ia~~L 164 (287)
.+.+|+..+|+|...++|++|++++|+|+..+. .++.||+|+||+||+|+|++ ++++...+|.+|++.|
T Consensus 427 ~~~~g~~~~p~~g~~giGveRli~~l~e~~~d~----------~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~L 496 (572)
T 2j3l_A 427 LDENGREKSVIMGCYGIGVSRLLSAIVEQNADE----------RGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMM 496 (572)
T ss_dssp ECTTSCEEECEEEEEEEEHHHHHHHHHHHHEET----------TEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred ECCCCcEEeeeeeccccCHHHHHHHHHHhcCcc----------cCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 345788899998666778999999999985431 24689999999999999997 2346889999999999
Q ss_pred HHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC---CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 165 SVAGISHKIDITGASIGKRYARTDELGVPCAITVDS---TSSVTIRERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 165 R~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~---~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
|++|++|++|+++.++|+||++|+++|+||+||||+ +|+|+||+|++++|..++++++++.|+ ++.+..
T Consensus 497 r~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~~~~ 568 (572)
T 2j3l_A 497 TEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVDGVVEVKIKRTGEMLEVRKEELESTLS-ILMNTT 568 (572)
T ss_dssp HHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGGGGTEEEEEETTTCCEEEEEHHHHHHHHH-HHCC--
T ss_pred HhCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEcccccCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHhccc
Confidence 999999999999899999999999999999999998 799999999999999999999999998 877543
No 10
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.89 E-value=3.5e-23 Score=202.49 Aligned_cols=130 Identities=21% Similarity=0.324 Sum_probs=114.3
Q ss_pred cccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042110 87 KEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLV-QNQQYEEVAKVISESLS 165 (287)
Q Consensus 87 ~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~-~~~e~~~~A~~Ia~~LR 165 (287)
+.+|+...|++++.++|++|++++|+|++++. .++.||+|+||++|+|+|++ ++++...+|.+|++.||
T Consensus 323 ~~~G~~~p~~~~gfgiGveRli~al~e~~~d~----------~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr 392 (458)
T 2i4l_A 323 GPDGTDAPIHGGSYGVGVSRLLGAIIEACHDD----------NGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELS 392 (458)
T ss_dssp CTTSCEEECEEEEEEEEHHHHHHHHHHHSEET----------TEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEeceEEeeecccHHHHHHHHHHhhccc----------cCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 45777766667688889999999999987652 24689999999999999996 33568899999999999
Q ss_pred HCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHH
Q 042110 166 VAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIV 226 (287)
Q Consensus 166 ~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l 226 (287)
++|++|.+|+++.++|+||++||++|+||+||||+ +|+|+||+|+|++|..++++++++.|
T Consensus 393 ~~Gi~v~~D~~~~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 393 AKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp HTTCCEEEECSSCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred hCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 99999999999899999999999999999999998 89999999999999999999986544
No 11
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.89 E-value=1.1e-22 Score=202.53 Aligned_cols=143 Identities=21% Similarity=0.283 Sum_probs=120.4
Q ss_pred CCeeEEeecce-eeEeeee------ecccCcEEeceEeecceeh-hHHHHHHHHhccccCCCCCCCcccccccCCCCCCC
Q 042110 68 LGKNVCIKKNM-LLISKEK------KKEFQRVFTPSVIEPSSGI-DRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAP 139 (287)
Q Consensus 68 ~g~~~~i~~~~-v~~~~~~------~~~~~~~~~P~VIe~S~GI-eRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP 139 (287)
+|+..++...+ +.++..+ .+.+|+..+|| ..++|+ +|+|++|+|+..+ + .++.||+|+||
T Consensus 232 dgr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h--~~~~G~~~R~iaaliE~~~d--------e--~Gl~lP~~LAP 299 (518)
T 3ial_A 232 CGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPY--LTCAGISTRVLACALSIHGD--------S--GGLVLPPLIAP 299 (518)
T ss_dssp TSCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCE--EEEEEEETHHHHHHHHHHCB--------T--TBCCCCGGGCS
T ss_pred CCCEEEEeceecccchhhhhcCcEEECCCCCEeeeE--EeccchHHHHHHHHHHHhCC--------C--CccccCCccce
Confidence 36677776654 2332111 46678888885 468886 7999999998432 1 36899999999
Q ss_pred ceEEEEEecCC--------hhHHHHHHHHHHHHHHC-CCeEEEeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEE
Q 042110 140 IKCTVFTLVQN--------QQYEEVAKVISESLSVA-GISHKIDIT-GASIGKRYARTDELGVPCAITVDS----TSSVT 205 (287)
Q Consensus 140 ~kV~Ilpl~~~--------~e~~~~A~~Ia~~LR~~-Gi~v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVT 205 (287)
+||+|+|+..+ +++.++|.+|++.|+++ ||+|.+|++ +.++|+||++|+.+|+||+|+||+ +|+|+
T Consensus 300 ~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~ 379 (518)
T 3ial_A 300 IHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCI 379 (518)
T ss_dssp CSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEE
T ss_pred EEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEE
Confidence 99999999853 46789999999999999 999999998 899999999999999999999998 89999
Q ss_pred EEECCCCC--eeeEeHHHH
Q 042110 206 IRERDSKD--QMRVHVDDV 222 (287)
Q Consensus 206 LRdrdt~~--Q~~V~leel 222 (287)
||+|++++ |..++++++
T Consensus 380 vr~Rd~~~~~k~~v~~~el 398 (518)
T 3ial_A 380 VVPRDVGKDQKRVIPITEV 398 (518)
T ss_dssp EEETTTCGGGCEEEEHHHH
T ss_pred EEECCCCccceeEeeHHHH
Confidence 99999999 999999999
No 12
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.89 E-value=9.1e-23 Score=203.11 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=122.9
Q ss_pred CCeeEEeecc-eeeEeeee------ec--ccCcEEeceEeecceeh-hHHHHHHHHhccccCCCCCCCcccccccCCCCC
Q 042110 68 LGKNVCIKKN-MLLISKEK------KK--EFQRVFTPSVIEPSSGI-DRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLV 137 (287)
Q Consensus 68 ~g~~~~i~~~-~v~~~~~~------~~--~~~~~~~P~VIe~S~GI-eRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~i 137 (287)
.|+..++++. ++.+...+ .+ .+|++. .|++.|||+ +|+|++|+|+..+. .++.||+++
T Consensus 239 ~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~--~vh~~~~Gi~~R~l~aliE~~~d~----------~gl~~P~~l 306 (519)
T 4hvc_A 239 SGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQ--FAYQNSWGLTTRTIGVMTMVHGDN----------MGLVLPPRV 306 (519)
T ss_dssp TTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEE--ECEEEEEEEETHHHHHHHHHHCBT----------TBCCCCTTT
T ss_pred CCCEEeecccccccchhhhhcCcEEeccccCCCEE--EEEEccccHHHHHHHHHHHHhCcc----------ccccccccC
Confidence 4666766654 34332211 23 246665 466688987 69999999984331 257899999
Q ss_pred CCceEEEEEecC--------ChhHHHHHHHHHHHHHHCCCeEEEeCCCC-CHHHHHHHhHHcCCCEEEEEcC----CCcE
Q 042110 138 APIKCTVFTLVQ--------NQQYEEVAKVISESLSVAGISHKIDITGA-SIGKRYARTDELGVPCAITVDS----TSSV 204 (287)
Q Consensus 138 AP~kV~Ilpl~~--------~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~-SIGKr~k~AdeiGiPy~IiIG~----~gtV 204 (287)
||+||+|+|++. +++..++|.+|++.|+++||+|++|+++. ++|+||++|+++|+||+|+||+ +|+|
T Consensus 307 aP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~~ivIG~kele~g~V 386 (519)
T 4hvc_A 307 ACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQF 386 (519)
T ss_dssp CSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEE
T ss_pred CCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCEEEEECchhhcCCeE
Confidence 999999999973 14678999999999999999999999984 9999999999999999999998 8999
Q ss_pred EEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 205 TIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 205 TLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+||+|++++|..++++++++.|.+++.
T Consensus 387 ~vr~R~tgeq~~v~~~el~~~l~~ll~ 413 (519)
T 4hvc_A 387 VAVRRDTGEKLTVAENEAETKLQAILE 413 (519)
T ss_dssp EEEETTTCCEEEEEGGGHHHHHHHHHH
T ss_pred EEEECCCCCccceeHHHHHHHHHHHHH
Confidence 999999999999999999988766543
No 13
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.89 E-value=1.6e-22 Score=200.33 Aligned_cols=134 Identities=16% Similarity=0.250 Sum_probs=115.9
Q ss_pred cccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEe-cCC--hhHHHHHHHHHHH
Q 042110 87 KEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTL-VQN--QQYEEVAKVISES 163 (287)
Q Consensus 87 ~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl-~~~--~e~~~~A~~Ia~~ 163 (287)
+.+|+...||+...++| +|+|++|+|+... + .++.||+++||+||+|+|+ ..+ ++..++|.+|++.
T Consensus 273 ~~~g~~~~~h~~g~Gig-eRli~aliE~~~d--------~--~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~ 341 (501)
T 1nj1_A 273 TPEGDHEYVHQTCYGLS-DRVIASVIAIHGD--------E--SGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSR 341 (501)
T ss_dssp CTTSCEEECEEEEEEEC-THHHHHHHHHTCC--------S--SSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEeeeeccccHH-HHHHHHHHHHcCc--------c--cCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHH
Confidence 34577677777555566 9999999997422 1 2478999999999999999 533 3688999999999
Q ss_pred HHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 164 LSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 164 LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
||++|++|++|+++.++|+||++|+++|+||+|+||+ +|+|+||+|++++|..++++++++.|.+++.
T Consensus 342 Lr~~Gi~v~~D~~~~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~ 413 (501)
T 1nj1_A 342 LEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMK 413 (501)
T ss_dssp HHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHH
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHH
Confidence 9999999999999899999999999999999999998 8999999999999999999999988877654
No 14
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.88 E-value=3.3e-22 Score=197.09 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=114.0
Q ss_pred cccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCCh---hHHHHHHHHHHH
Q 042110 87 KEFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQ---QYEEVAKVISES 163 (287)
Q Consensus 87 ~~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~---e~~~~A~~Ia~~ 163 (287)
+.+|....|+....++| +|++++|+++..+ + .++.||+++||+||+|+|+++++ +...+|.+|++.
T Consensus 246 ~~~G~~~~~~~~~~Gig-eRli~~lie~~~d--------~--~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~ 314 (477)
T 1hc7_A 246 DRDLQVKYVHTTSWGLS-WRFIGAIIMTHGD--------D--RGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQA 314 (477)
T ss_dssp CTTSCEEECEEEEEEEE-THHHHHHHHHHCB--------T--TBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred CCCCCEEeeeEeeccHH-HHHHHHHHHHhCc--------c--ccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHH
Confidence 45677666655444455 7999999987432 1 25789999999999999997533 578999999999
Q ss_pred HHHCCCeEEEeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 164 LSVAGISHKIDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 164 LR~~Gi~v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
||++|++|++|++ +.++|+||++|+++|+||+|+||+ +|+|+||+|+ ++|..++++++++.|.+++.
T Consensus 315 Lr~~Gi~v~~D~~~~~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~ 386 (477)
T 1hc7_A 315 LLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLD 386 (477)
T ss_dssp HHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHH
T ss_pred HHhCCEEEEEeCCCCCCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHH
Confidence 9999999999998 899999999999999999999998 8999999999 99999999999988876654
No 15
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.87 E-value=8.5e-22 Score=193.19 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=112.7
Q ss_pred ccCcEEeceEeecceeh-hHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEe-cCC--hhHHHHHHHHHHH
Q 042110 88 EFQRVFTPSVIEPSSGI-DRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTL-VQN--QQYEEVAKVISES 163 (287)
Q Consensus 88 ~~~~~~~P~VIe~S~GI-eRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl-~~~--~e~~~~A~~Ia~~ 163 (287)
.+|+... ++..|||+ +|++++|++++-+ + .++.||+++||+||+|+|+ +.+ ++...+|.+|++.
T Consensus 242 ~~G~~~~--v~~~~~GigeRli~alie~~~d--------~--~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~ 309 (459)
T 1nj8_A 242 PTGDKDY--AYQTCYGISDRVIASIIAIHGD--------E--KGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEK 309 (459)
T ss_dssp TTSSEEE--CEEEEEEECTHHHHHHHHHHCB--------T--TBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEee--eeEeeccHHHHHHHHHHHHhCC--------C--ceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHH
Confidence 4555444 34567776 8999999887422 1 3578999999999999999 632 3688999999999
Q ss_pred HHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 164 LSVAGISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 164 LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
||++ ++|++|+++.++|+||++|+++|+||+|+||+ +|+|+||+|+|++|..++++++++.|.+++.
T Consensus 310 Lr~~-i~v~~D~~~~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~ 380 (459)
T 1nj8_A 310 LKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLN 380 (459)
T ss_dssp HHTT-SCEEECCSCSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHH
T ss_pred Hhhh-cEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHH
Confidence 9999 99999999899999999999999999999998 8999999999999999999999998877654
No 16
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.83 E-value=4.9e-21 Score=187.93 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=119.7
Q ss_pred ccCcEEeceEeecc--eehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecC----ChhHHHHHHHHH
Q 042110 88 EFQRVFTPSVIEPS--SGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQ----NQQYEEVAKVIS 161 (287)
Q Consensus 88 ~~~~~~~P~VIe~S--~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~----~~e~~~~A~~Ia 161 (287)
.+|.. .|.+++.+ .|++|++++++++. + + .||+|+||++|+|+|++. +++...+|.+|+
T Consensus 300 ~~G~~-e~~~i~~~i~GgieRli~~lie~~--------~-----g-~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~ 364 (471)
T 3a32_A 300 EFGIE-EVYIIHRALLGSIERFLGVYLEHR--------R-----G-RMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIA 364 (471)
T ss_dssp HHCCS-CEEEEEEEEEEEHHHHHHHHHHHT--------T-----T-CCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHH
T ss_pred cCCce-eeEEEeccccCcHHHHHHHHHHHh--------C-----C-CCCCCcCCceEEEEEccCcccccHHHHHHHHHHH
Confidence 34666 88777743 48999998888872 1 1 589999999999999983 246889999999
Q ss_pred HHHHHCCCeEEEeC-CCCCHHHHHHHhH-HcCCCEEEEEcC----CCcEEEEECCCCC--eeeEeHH-----HHHHHHHH
Q 042110 162 ESLSVAGISHKIDI-TGASIGKRYARTD-ELGVPCAITVDS----TSSVTIRERDSKD--QMRVHVD-----DVASIVKA 228 (287)
Q Consensus 162 ~~LR~~Gi~v~vD~-s~~SIGKr~k~Ad-eiGiPy~IiIG~----~gtVTLRdrdt~~--Q~~V~le-----el~~~l~~ 228 (287)
+.||++|++|++|+ ++.++|+||++|+ ++|+||+|+||+ +|+|+||+|++++ |.+|+++ ++++.|.+
T Consensus 365 ~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~ 444 (471)
T 3a32_A 365 KGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAA 444 (471)
T ss_dssp HHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCCCCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCccceEEEeecccchhHHHHHHHH
Confidence 99999999999999 8899999999999 999999999998 8999999999998 6888888 77777666
Q ss_pred Hhc----CCCChHHHhccCCC
Q 042110 229 LTD----GQRTWEDVWANSPF 245 (287)
Q Consensus 229 l~~----~~~~w~~~~~~~p~ 245 (287)
++. .-..|++..-++|.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3a32_A 445 VAEELESPVRSLSGQAPRIPA 465 (471)
T ss_dssp HHHHHHHHHHHHHSSCCCCCE
T ss_pred HHHHHHHHHHHHhccccccCC
Confidence 554 44557777777775
No 17
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.81 E-value=7.4e-20 Score=175.62 Aligned_cols=121 Identities=15% Similarity=0.226 Sum_probs=107.5
Q ss_pred ccCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHC
Q 042110 88 EFQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVA 167 (287)
Q Consensus 88 ~~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~ 167 (287)
..|.+.+|.| +.|+|++|++.+| ++. .+.||+ ++|++|+|+|+++ +...+|.++++.||++
T Consensus 295 ~~g~~~~P~v-g~~igveRl~~~l-e~~--------------~~~~p~-~~p~~v~i~~~~~--~~~~~a~~l~~~Lr~~ 355 (420)
T 1qe0_A 295 LLDGPSETGI-GFALSIERLLLAL-EEE--------------GIELDI-EENLDLFIVTMGD--QADRYAVKLLNHLRHN 355 (420)
T ss_dssp HTTCCCCEEE-EEEEEHHHHHHHH-HHT--------------TCCCCC-CCCCSEEEEECHH--HHHHHHHHHHHHHHTT
T ss_pred HhCCCCCCEE-EEEecHHHHHHHH-Hhc--------------CCCCCC-CCCCeEEEEEeCH--HHHHHHHHHHHHHHHC
Confidence 3445678986 9999999999987 551 125777 8999999999974 5778999999999999
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~ 227 (287)
|++|++|+++.++|+||++|+++|+||+||||+ +|+|+||+|++++|..++++++++.|+
T Consensus 356 Gi~v~~d~~~~~~~~~~~~a~~~g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 356 GIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp TCCEEECCSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHHHHHcCCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999998899999999999999999999997 899999999999999999999998775
No 18
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.81 E-value=5.3e-20 Score=180.40 Aligned_cols=121 Identities=19% Similarity=0.316 Sum_probs=108.7
Q ss_pred CcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCC-CCCCceEEEEEecCChhHHHHHHHHHHHHHHCC
Q 042110 90 QRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPP-LVAPIKCTVFTLVQNQQYEEVAKVISESLSVAG 168 (287)
Q Consensus 90 ~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~-~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~G 168 (287)
|.. +|.| +.|+|+||++.+|.+++ .||. |.+|++|+|+|+++ +...+|.++++.||++|
T Consensus 339 g~~-~pav-GfaiGieRli~~L~e~g----------------~~p~~~~~p~~V~Vi~~~~--~~~~~A~~la~~LR~~G 398 (465)
T 3net_A 339 GEK-MPGV-GISIGLTRLISRLLKAG----------------ILNTLPPTPAQVVVVNMQD--ELMPTYLKVSQQLRQAG 398 (465)
T ss_dssp CSC-CCEE-EEEEEHHHHHHHHHHTT----------------SSCCCCSCSCCEEECCSCG--GGHHHHHHHHHHHHHTT
T ss_pred CCC-Ccee-eeeccHHHHHHHHHHcC----------------CCCCcCCCCCeEEEEEcCH--HHHHHHHHHHHHHHHCC
Confidence 555 8988 99999999999998873 2565 78999999999875 57789999999999999
Q ss_pred CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC---CC-cEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 169 ISHKIDITGASIGKRYARTDELGVPCAITVDS---TS-SVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~---~g-tVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
++|++|+++.++|+||++|++.|+||+||||+ +| +|+||+|+|++|..++++++++.|++++
T Consensus 399 i~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 399 LNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp CCEEECCSCCCHHHHHHHHHHHTCCEEEECCHHHHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCEEEEECchhhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 99999999999999999999999999999998 68 9999999999999999999999987653
No 19
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.80 E-value=2.6e-19 Score=172.12 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=108.4
Q ss_pred EEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHC--CC
Q 042110 92 VFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVA--GI 169 (287)
Q Consensus 92 ~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~--Gi 169 (287)
+.+|.| +.|+|++|++.++.+++. +|++.+|++|+|+|+++ +....|.++++.||++ |+
T Consensus 297 ~~~pav-Gf~igveRl~~~l~e~~~----------------~~~~~~p~~v~i~~~~~--~~~~~a~~l~~~Lr~~~~Gi 357 (423)
T 1htt_A 297 RATPAV-GFAMGLERLVLLVQAVNP----------------EFKADPVVDIYLVASGA--DTQSAAMALAERLRDELPGV 357 (423)
T ss_dssp CCCCEE-EEEEEHHHHHHHHHHHST----------------TCCCCCSCSEEEEECST--THHHHHHHHHHHHHHHSTTC
T ss_pred CCCCeE-EEEecHHHHHHHHHhcCc----------------CCCCCCCCcEEEEEcCH--HHHHHHHHHHHHHHcCCCCc
Confidence 347987 999999999999988731 35667999999999975 5778999999999999 99
Q ss_pred eEEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 170 SHKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 170 ~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
+|++|+++.++|+|+++|+++|+||+|+||+ +|+|+||+|++++|..++++++++.|++++
T Consensus 358 ~v~~d~~~~~~~~~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 358 KLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp CEEECCSCCCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 9999998899999999999999999999998 899999999999999999999999987654
No 20
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.80 E-value=4.2e-19 Score=170.59 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=107.1
Q ss_pred EEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeE
Q 042110 92 VFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISH 171 (287)
Q Consensus 92 ~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v 171 (287)
+.+|.| +.|+|++|++.++.+++ .+|||.+|++|+|+|+++ +....|.++++.||++ ++|
T Consensus 298 ~~~pa~-Gf~igieRl~~~l~e~~----------------~~~~~~~p~~v~i~~~~~--~~~~~a~~l~~~Lr~~-i~v 357 (421)
T 1h4v_B 298 PRVPGV-GFAFGVERVALALEAEG----------------FGLPEEKGPDLYLIPLTE--EAVAEAFYLAEALRPR-LRA 357 (421)
T ss_pred CCCCeE-EEeecHHHHHHHHHhcC----------------cCCCCCCCCeEEEEECCh--HHHHHHHHHHHHHHhc-CEE
Confidence 458975 99999999999998763 135677999999999975 5778999999999999 999
Q ss_pred EEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 172 KIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 172 ~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
++|+++.++|+||++|+++|+||+|+||+ +|+|+||+|++++|..++++++++.|++++
T Consensus 358 ~~d~~~~~~~~~~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 358 EYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred EEecCCCCHHHHHHHHHhCCCCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 99998899999999999999999999998 899999999999999999999999987654
No 21
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.79 E-value=5.2e-19 Score=173.63 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=106.6
Q ss_pred cCcEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCC
Q 042110 89 FQRVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAG 168 (287)
Q Consensus 89 ~~~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~G 168 (287)
.|.+.+|.| +.|+|+|||+.+|.+++ .+|. .+|++|+|+|+++ +...+|.++++.||++|
T Consensus 322 ~g~~~~Pav-Gfa~gleRl~~~l~~~~----------------~~~~-~~p~~V~Vip~~~--~~~~~A~~ia~~LR~~G 381 (467)
T 4e51_A 322 LGGKPTAAC-GWAMGIERILELLKEEH----------------LVPE-QEGVDVYVVHQGD--AAREQAFIVAERLRDTG 381 (467)
T ss_dssp TTSSCCCEE-EEEEEHHHHHHHHHHTT----------------CCCC-CCCCSEEEEECSH--HHHHHHHHHHHHHHHTT
T ss_pred hCCCCCCce-eehHHHHHHHHHHHhcC----------------Cccc-CCCCeEEEEEcCh--HHHHHHHHHHHHHHHcC
Confidence 455678988 99999999999987752 1233 6899999999975 57889999999999999
Q ss_pred CeEEEeCC----CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCC-C------CeeeEeHHHHHHHHHHHh
Q 042110 169 ISHKIDIT----GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDS-K------DQMRVHVDDVASIVKALT 230 (287)
Q Consensus 169 i~v~vD~s----~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt-~------~Q~~V~leel~~~l~~l~ 230 (287)
++|++|.+ +.++|+||++|++.|+||+||||+ +|+|+||+|++ + +|..++++++++.|++.+
T Consensus 382 i~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 382 LDVILHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp CCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred CeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 99999998 799999999999999999999998 79999999999 8 999999999999998766
No 22
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=172.18 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=108.1
Q ss_pred cEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCe
Q 042110 91 RVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGIS 170 (287)
Q Consensus 91 ~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~ 170 (287)
...+|.| +.|+|++||+.+|.++.. .+.+|.+.+|++|+|+++++ +...+|.+|++.||++||+
T Consensus 385 G~~~pav-Gfa~gierl~~~le~~~~-------------~~~~~~~~~~~~V~v~~~~~--~~~~~a~~l~~~Lr~~Gi~ 448 (517)
T 4g85_A 385 GRKVPCV-GLSIGVERIFSIVEQRLE-------------ALEEKIRTTETQVLVASAQK--KLLEERLKLVSELWDAGIK 448 (517)
T ss_dssp CCCCCEE-EEEECHHHHHHHHHHHHH-------------HTTCCCCSCCCCEEEEESSS--SCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCcc-cccchHHHHHHHHHHhcc-------------ccCccccCCCCEEEEEeCCH--HHHHHHHHHHHHHHHCCCc
Confidence 3458888 999999999987755521 12345566789999999876 5678999999999999999
Q ss_pred EEEeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 171 HKIDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 171 v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
|++|+. +.++++||++|++.|+||+||||+ +|+|+||++.||+|..|+++++++.|++.+..
T Consensus 449 ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 515 (517)
T 4g85_A 449 AELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 515 (517)
T ss_dssp EEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 999864 568999999999999999999998 89999999999999999999999999987653
No 23
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=169.27 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=106.6
Q ss_pred cEEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCe
Q 042110 91 RVFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGIS 170 (287)
Q Consensus 91 ~~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~ 170 (287)
...+|.| +.|+|+||++.+|.+++... ..+.+..|++|+|+++++ +...+|.+|++.||++||+
T Consensus 332 g~~~pav-GfaigieRl~~~l~~~~~~~-------------~~~~~~~~~~v~v~~~~~--~~~~~a~~l~~~Lr~~Gi~ 395 (464)
T 4g84_A 332 GRKVPCV-GLSIGVERIFSIVEQRLEAL-------------EEKIRTTETQVLVASAQK--KLLEERLKLVSELWDAGIK 395 (464)
T ss_dssp CCCCCEE-EEEECHHHHHHHHHHHHHTT-------------TCCCCSCCCCEEEECSSS--SCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCc-cccccHHHHHHHHHHhcccc-------------CcccccccceEEEEeCCH--HHHHHHHHHHHHHHHCCCc
Confidence 3457888 99999999998887764221 112334578899998875 5678999999999999999
Q ss_pred EEEeCC-CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 171 HKIDIT-GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 171 v~vD~s-~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
|++|+. +.++++||++|++.|+||+||||+ +|+|+||+|.||+|..|+++++++.|++.+..
T Consensus 396 ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~~ 462 (464)
T 4g84_A 396 AELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 462 (464)
T ss_dssp EECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhcC
Confidence 999864 568999999999999999999998 89999999999999999999999999987653
No 24
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.76 E-value=4.3e-18 Score=164.62 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=106.6
Q ss_pred EEeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccC-CCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCe
Q 042110 92 VFTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRF-PPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGIS 170 (287)
Q Consensus 92 ~~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~l-P~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~ 170 (287)
+..|.| +.|+|++|++.++.+++ .| |+ +|++|+|+|+++ +...+|.++++.||++|++
T Consensus 303 ~~~pa~-Gf~igveRl~~~l~e~~----------------~~~p~--~p~~v~v~~~~~--~~~~~a~~l~~~Lr~~Gi~ 361 (434)
T 1wu7_A 303 ESVPAV-GFGMGDAVISLLLKREN----------------VQIPR--EKKSVYICRVGK--INSSIMNEYSRKLRERGMN 361 (434)
T ss_dssp CCCCEE-EEEEEHHHHHHHHHHTT----------------CCCCC--SSCEEEEEEESS--CCHHHHHHHHHHHHTTTCE
T ss_pred CCCCeE-EEEEcHHHHHHHHHhcC----------------CccCC--CCCcEEEEEcCh--HHHHHHHHHHHHHHHCCCe
Confidence 347875 99999999999998763 24 55 799999999975 4678999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 171 HKIDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 171 v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
|++|+++.++|+++++|++.|+||+|+||+ +|+|+||+|++++|..++++++++.|+++++
T Consensus 362 v~~d~~~~~~~~~~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 362 VTVEIMERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp EEECCSCCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred EEEecCCCCHHHHHHHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 999998899999999999999999999997 8999999999999999999999999877554
No 25
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.64 E-value=8.2e-16 Score=127.61 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=86.4
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC--CCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCC
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT--GASIGKRYARTDELGVPCAITVDS----TSSVTIRERDS 211 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s--~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt 211 (287)
-|.||.|+|+++ ++.+||.+|.+.|++.|++|++|.+ +.+||++++.|...|+||+|+||+ +|+|+||.|..
T Consensus 7 ~P~Qv~IlpVs~--~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~ 84 (130)
T 1v95_A 7 GPVDCSVIVVNK--QTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFG 84 (130)
T ss_dssp CCCTEEEEESSS--GGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEECSS
T ss_pred CCCeEEEEEeCc--chHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEecCC
Confidence 489999999986 6889999999999999999999997 899999999999999999999999 89999999988
Q ss_pred --CCeeeEeHHHHHHHHHHHhcC
Q 042110 212 --KDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 212 --~~Q~~V~leel~~~l~~l~~~ 232 (287)
+++..++++++++.|...+..
T Consensus 85 ~~~e~~~m~lde~i~~l~~~~~~ 107 (130)
T 1v95_A 85 TPQEHRNMPQADAMVLVARNYER 107 (130)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCccCccCHHHHHHHHHHHHHH
Confidence 788899999999999766654
No 26
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.62 E-value=1.2e-15 Score=149.58 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=85.4
Q ss_pred EeceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEE
Q 042110 93 FTPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHK 172 (287)
Q Consensus 93 ~~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~ 172 (287)
.+|.| +.|+|+|||+.+|.+.+. +|+.-.+.+++|++.++ +....|.++++.||++|++|+
T Consensus 332 ~~Pav-GFaig~eRl~~~l~~~~~----------------~~~~~~~~~v~v~~~~~--~~~~~a~~la~~LR~~Gi~ve 392 (456)
T 3lc0_A 332 PIPCA-GFGFGDCVIVELLQEKRL----------------LPDIPHVVDDVVIPFDE--SMRPHALAVLRRLRDAGRSAD 392 (456)
T ss_dssp CCCEE-EEEEESSHHHHHHHHTTC----------------CCCCCCCEEEEEEESSG--GGHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEE-EEEeEHHHHHHHHHhcCC----------------CCccCCCCcEEEEEcCH--HHHHHHHHHHHHHHHCCCeEE
Confidence 58998 999999999988855421 12222357899999875 467889999999999999999
Q ss_pred EeCCCCCHHHHHHHhHHcCCCEEEEEcC----CCcEEEEECCCCCeeeEeHHHH
Q 042110 173 IDITGASIGKRYARTDELGVPCAITVDS----TSSVTIRERDSKDQMRVHVDDV 222 (287)
Q Consensus 173 vD~s~~SIGKr~k~AdeiGiPy~IiIG~----~gtVTLRdrdt~~Q~~V~leel 222 (287)
+|..++++++||++|++.|+||+||||+ +|+|+|||+.|++|..+++++.
T Consensus 393 ~~~~~~slkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 393 IILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp ECCSCCCHHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred EecCCCCHHHHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 9998899999999999999999999998 8999999999999999998764
No 27
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.03 E-value=0.001 Score=63.83 Aligned_cols=81 Identities=7% Similarity=-0.052 Sum_probs=57.8
Q ss_pred eceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEE
Q 042110 94 TPSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKI 173 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~v 173 (287)
+|.| +.|+|+|||+.+|.+.+. .++ .| .++| +.++ +....|.++++.||++|++|++
T Consensus 311 ~pav-GfaiglerL~~~l~~~~~----------------~~~--~~-~v~v-~~~~--~~~~~a~~~a~~LR~~G~~v~~ 367 (400)
T 3od1_A 311 AQAT-GFGVRIDLLVEALNGEII----------------SNG--HE-QTCI-LFSN--ERRFEAIELARKKRANGEAVVL 367 (400)
T ss_dssp CCEE-EEEEEHHHHHHHHCC------------------------CC-CEEE-EECG--GGHHHHHHHHHHHHTTTCCEEE
T ss_pred CCEE-EEEeeHHHHHHHHHhcCC----------------CCC--CC-eEEE-EECc--HHHHHHHHHHHHHHHCCCEEEE
Confidence 8998 999999999987743311 111 12 2554 4544 4578899999999999999999
Q ss_pred eCCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 174 DITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 174 D~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
+..+.. ... +|...|+..++.+..
T Consensus 368 ~~~~~~-~~~--~~~~~~~~~~~~~~~ 391 (400)
T 3od1_A 368 QDLAGV-TDV--DAMSSNYQDVIYCIG 391 (400)
T ss_dssp EEGGGC-SCH--HHHHTTSSEEEEECS
T ss_pred EecCCh-hHH--HHHHcCCCEEEEEec
Confidence 986532 112 667779999999987
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=94.99 E-value=0.0084 Score=58.62 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=35.8
Q ss_pred cCcEEeceEeecc-eehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceEE
Q 042110 89 FQRVFTPSVIEPS-SGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKCT 143 (287)
Q Consensus 89 ~~~~~~P~VIe~S-~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV~ 143 (287)
+|+...+|++..| +|++|+|+||+|+... ++ +-+.||+|++|++ .
T Consensus 394 ~g~~~~vHtlngs~lav~R~i~allE~~~~-----~d----G~i~iP~~LaP~~-g 439 (455)
T 2dq0_A 394 DEKPRYVHTLNSTAIATSRAIVAILENHQE-----ED----GTVRIPKVLWKYT-G 439 (455)
T ss_dssp TSCCEECEEEEEEEEEHHHHHHHHHHHSBC-----TT----SCEECCGGGHHHH-S
T ss_pred CCcEEEEEEEechHhHHHHHHHHHHHHccC-----CC----CcEeCChhhCCcc-c
Confidence 6788899998555 7999999999999543 11 1278999999999 5
No 29
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=94.25 E-value=0.019 Score=55.59 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=35.7
Q ss_pred CcEEeceEeecc-eehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCce-EEEEE
Q 042110 90 QRVFTPSVIEPS-SGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIK-CTVFT 146 (287)
Q Consensus 90 ~~~~~P~VIe~S-~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~k-V~Ilp 146 (287)
++...+|.+-.| .|++|+|+||+|+... ++ +-+.||+|++|++ +.+++
T Consensus 374 ~k~~~vHtl~Gs~~av~R~i~allE~~~~-----~~----G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 374 GKNRFVHTLNGSGLAVGRTLAAILENYQQ-----ED----GSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp CSEEECEEEEEEEEEHHHHHHHHHHHTBC-----TT----SCEECCTTTHHHHSCSEEC
T ss_pred CeeEEEEEEeccccHHHHHHHHHHHhCCC-----CC----CCEecCccccCccCcccCC
Confidence 566788877665 6899999999998533 11 1278999999998 65553
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=90.62 E-value=0.12 Score=51.12 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=37.3
Q ss_pred cccCcEEeceEeecc-eehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCce-EEEE
Q 042110 87 KEFQRVFTPSVIEPS-SGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIK-CTVF 145 (287)
Q Consensus 87 ~~~~~~~~P~VIe~S-~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~k-V~Il 145 (287)
+.+|+...+|++..| +|++|+|+||+|+... +++ -+.||++++|+. ..++
T Consensus 422 ~~~gk~~~vHtlngSglav~R~l~alLEn~q~-----~dG----~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 422 TEAGELQFAHTVNATGCAVPRLLIALLESYQQ-----KDG----SVLVPPALQPYLGTDRI 473 (501)
T ss_dssp CSSSCEEECEEEEEEEEEHHHHHHHHHHHHBC-----TTS----CEECCGGGHHHHSSSEE
T ss_pred CCCCCEEEEEEECCccchHHHHHHHHHHhCCC-----CCC----CEeCChhhcCccCcccc
Confidence 346888899988765 6999999999999432 221 268999999997 4444
No 31
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=90.02 E-value=0.054 Score=53.89 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=40.3
Q ss_pred cCcEEeceEee-cceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceE----EEEEecCC
Q 042110 89 FQRVFTPSVIE-PSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKC----TVFTLVQN 150 (287)
Q Consensus 89 ~~~~~~P~VIe-~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV----~Ilpl~~~ 150 (287)
+|+...+|.+- .+++++|+|+||||.... + .++.+|+.++|+.. .++|+..+
T Consensus 417 ~~k~~~vhtlNgs~lav~R~l~AiLEn~q~-----~-----dGi~iP~~L~Py~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 417 MDKVEFVHMLNATMCATTRTICAILENYQT-----E-----KGITVPEKLKEFMPPGLQELIPFVKP 473 (522)
T ss_dssp CCCCCBCEEEEEEEEEHHHHHHHHHHHHBC-----S-----SEEECCHHHHTTSCTTSSSEEECCSC
T ss_pred CCCeeeceEEeccchHHHHHHHHHHHhCCC-----C-----CCeecChHhcCeeCCCcceEeecCCC
Confidence 46667788775 557999999999987322 1 13789999999987 89999864
No 32
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=87.89 E-value=0.21 Score=48.17 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=32.5
Q ss_pred ccCcEEece-EeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCce
Q 042110 88 EFQRVFTPS-VIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIK 141 (287)
Q Consensus 88 ~~~~~~~P~-VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~k 141 (287)
.+|+....| +.+.++|++|+|+||+|+... +++ -+.||++++|+.
T Consensus 367 ~~~~~~~vhtlngs~lav~R~l~allE~~~~-----~dG----~i~iP~~L~Py~ 412 (421)
T 1ses_A 367 PEGRVRYAYTLNNTALATPRILAMLLENHQL-----QDG----RVRVPQALIPYM 412 (421)
T ss_dssp TTSCEEECEEEEEEEEEETHHHHHHHHHHBC-----TTS----CEECCGGGHHHH
T ss_pred CCCCEEEEEecCCccchHHHHHHHHHHhCCC-----CCC----CEecChhcCCcc
Confidence 356544445 456778999999999999543 221 278999999986
No 33
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=87.53 E-value=0.18 Score=49.61 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=36.9
Q ss_pred CcEEeceEe-ecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCce--EEEEEecC
Q 042110 90 QRVFTPSVI-EPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIK--CTVFTLVQ 149 (287)
Q Consensus 90 ~~~~~P~VI-e~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~k--V~Ilpl~~ 149 (287)
++...+|.+ +.+++++|+|.||||+... + | ++.+|+.++|+. ..++|+..
T Consensus 419 ~~~~~vhtlNgt~~av~R~l~AiLEn~q~-----~-d----Gi~iP~~L~pym~g~~~i~~~~ 471 (484)
T 3lss_A 419 NVKEYCHMLNGTLCAITRTMCCICENYQT-----E-E----GVVIPDVLRPYMMGIEMIRFEN 471 (484)
T ss_dssp CSCEECEEEEEEEEEHHHHHHHHHHHHBC-----S-S----EEECCGGGGGGTTTCCEEECCC
T ss_pred CCceeeeEEeccchHHHHHHHHHHHhcCC-----C-C----CeeCChhhcCccCCcceeecCc
Confidence 444556555 5678999999999987432 2 1 378999999996 77788865
No 34
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=85.12 E-value=0.2 Score=49.93 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=32.9
Q ss_pred cccCcEEeceEee-cceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCc
Q 042110 87 KEFQRVFTPSVIE-PSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPI 140 (287)
Q Consensus 87 ~~~~~~~~P~VIe-~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~ 140 (287)
+.+|+...+|.+. .++|++|+|+||+|+... ++ +.+.+|+.++|+
T Consensus 475 ~~~~k~~~vhtlngs~~a~~R~l~ailen~q~-----~d----g~i~iP~~L~py 520 (536)
T 3err_A 475 DPEGRVRYAYTLNNTALATPRILAMLLENHQL-----QD----GRVRVPQALIPY 520 (536)
T ss_dssp CTTSCEEECEEEEEEEEEETHHHHHHHHHHBC-----TT----SCEECCGGGHHH
T ss_pred CCCCCeEeeeEEeccchhHHHHHHHHHHhcCC-----CC----CcEeCChhhCCc
Confidence 3457777777765 568999999999987432 22 127899999987
No 35
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.65 E-value=0.35 Score=47.67 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=36.0
Q ss_pred CcEEeceEe-ecceehhHHHHHHHHhccccCCCCCCCcccccccCCCCCCCceE---EEEEecC
Q 042110 90 QRVFTPSVI-EPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPLVAPIKC---TVFTLVQ 149 (287)
Q Consensus 90 ~~~~~P~VI-e~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~iAP~kV---~Ilpl~~ 149 (287)
|+...+|.+ +.+++++|+|.||+|.. .. + | ++.+|+.++|+.- .++|+..
T Consensus 393 ~~~~~vhtlNgt~lav~R~l~AiLEn~-q~----~-d----Gi~iP~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 393 QEKKYVHCLNSTLSATERTICCILENY-QK----E-D----GLVIPEVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp -CCCBCEEEEEEEEEHHHHHHHHHHHS-EE----T-T----EEECCHHHHTTSTTCCSEEECCC
T ss_pred CCceeeEEEecchhHHHHHHHHHHHhc-CC----C-C----ceecChhhcCccCCcceEeeccc
Confidence 444556655 56789999999999873 32 1 1 3789999999964 7789875
No 36
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=70.24 E-value=9.1 Score=33.54 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH----cC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 168 GISHKIDITGASIGKRYARTDE----LG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade----iG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
.+.+..|..++.++++|.-... .| +|..++||.+|+|.-+.....-..+...+++.+.|+.+...
T Consensus 107 ~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 107 NIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp TCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhc
Confidence 4667777646889999865432 23 79999999999999888766544567799999999887663
No 37
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=69.93 E-value=18 Score=28.34 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=50.1
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
..+.|+|++..++..++..++.+.|++.|+...+...+-. +++-...+-+.|++-+.++ +.|-+
T Consensus 10 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~t~-----iKId~ 84 (109)
T 1yqh_A 10 MSFSVVPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITS-----IKIHY 84 (109)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEE-----EEEEC
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEE-----EEEEe
Confidence 6889999986557889999999999999999999886432 3555555677798877654 45555
Q ss_pred CCC
Q 042110 209 RDS 211 (287)
Q Consensus 209 rdt 211 (287)
|..
T Consensus 85 R~d 87 (109)
T 1yqh_A 85 RPS 87 (109)
T ss_dssp CTT
T ss_pred cCC
Confidence 544
No 38
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=67.78 E-value=16 Score=28.85 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=40.5
Q ss_pred CCeEEEeCCCCCHHHHHHHhH-HcCC--CEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTD-ELGV--PCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad-eiGi--Py~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
.+.+..|..++.+.++|.-.. ..|+ |..++||.+|.|.-+..........+.+++.+.|++
T Consensus 99 ~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 99 NAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred CcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 456666623567888776432 1254 999999999998877765433334567788877764
No 39
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=66.71 E-value=11 Score=29.30 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=44.2
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEE
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITV 198 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiI 198 (287)
..+.|+|++..++..++..++.+.|++.|+.+.+...+-. +++-...+-+ |++-++++
T Consensus 5 ve~sv~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~-g~~RV~t~ 73 (104)
T 2ibo_A 5 IALQVLPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEFDELMRILKEALEVAGQ-EADNVFAN 73 (104)
T ss_dssp EEEEEEECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHHHHHT-SCSCEEEE
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHc-CCCEEEEE
Confidence 5788999985567889999999999999999999886433 3555555666 77766543
No 40
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=66.65 E-value=42 Score=25.83 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=59.2
Q ss_pred ceEEEEEecC-ChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEEcCCCcEEEE
Q 042110 140 IKCTVFTLVQ-NQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 140 ~kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiIG~~gtVTLR 207 (287)
..+.|+|++. .++..++..++.+.|++.|+.+.+...+-. +++-...+-+.|++-++++ +.+-
T Consensus 8 ve~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm~T~IEGe~devm~vv~~~~e~~~~~G~~RV~~~-----iKid 82 (104)
T 1lxj_A 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD-----IRVG 82 (104)
T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE-----EEEE
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEE-----EEEE
Confidence 5789999984 357889999999999999999999885432 4666667777899877654 4554
Q ss_pred ECCCCCeeeEeHHHHHHHHHHHh
Q 042110 208 ERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 208 drdt~~Q~~V~leel~~~l~~l~ 230 (287)
+|..+ ..++++-++.+.+.+
T Consensus 83 ~R~d~---~~~~~~Kv~~v~~~l 102 (104)
T 1lxj_A 83 TRTDK---HQTAQDKIDVVLKKI 102 (104)
T ss_dssp CCSSC---CCCHHHHHHHHHHHH
T ss_pred ecCCC---CCCHHHHHHHHHHHh
Confidence 44332 356677666665544
No 41
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=66.30 E-value=8.5 Score=30.17 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHcC---------CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 167 AGISHKIDITGASIGKRYARTDELG---------VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~AdeiG---------iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
..+.+..|. +..+.++|.-....+ +|..++||.+|+|.-+.... ...-.++++.+.|+++.
T Consensus 92 ~~~~~~~d~-~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~--~~~~~~~~il~~l~~l~ 161 (163)
T 3gkn_A 92 FAFPLVSDG-DEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKV--KVAGHADAVLAALKAHA 161 (163)
T ss_dssp CSSCEEECT-TCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSC--CSTTHHHHHHHHHHHHC
T ss_pred CCceEEECC-cHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCC--CcccCHHHHHHHHHHHh
Confidence 456666664 667777775433221 89999999999987776332 22345677877777654
No 42
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=64.79 E-value=18 Score=28.93 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=41.1
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. ...+.+.|....-.++|..++||.+|.+.-+.... .+.+++.+.|.++++
T Consensus 124 ~~~~~~d~-~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~-----~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 124 DYPSIYDP-PFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLRE-----VTSKDVLDVALPLVD 181 (183)
T ss_dssp CSCEEECT-TCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSC-----CCHHHHHHHHHHHHH
T ss_pred CccEEECC-cchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCC-----CCHHHHHHHHHHHHh
Confidence 35566665 56677776544457899999999988887665432 467888888887765
No 43
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=63.53 E-value=15 Score=29.64 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=41.6
Q ss_pred CCeEEEeCCCCCHHHHHHHhH-------HcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTD-------ELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad-------eiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. ++++.++|.-.. ....|-.++||.+|+|.-+.....-..+.+.+++++.|+++..
T Consensus 91 ~fp~l~D~-~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 91 AFNLLSDY-NREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp CSEEEECT-TSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred ccceeecC-chHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 45555554 677877774211 1124677899999999887765544445578899888877654
No 44
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=63.10 E-value=24 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeE-eHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRV-HVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V-~leel~~~l~~l~~ 231 (287)
.+.+..| +..+.++| .-.++|..++||.+|.+.- .-.. +.+++.+.|.+++.
T Consensus 112 ~~~~~~d--~~~~~~~~---~v~~~P~~~lid~~G~i~~-------~g~~~~~~~l~~~l~~l~~ 164 (165)
T 3ha9_A 112 SWIMVMD--DGSLVEKF---NVRSIDYIVIMDKSSNVLY-------AGTTPSLGELESVIKSVQG 164 (165)
T ss_dssp TSEEEEC--CSHHHHHT---TCCSSSEEEEEETTCCEEE-------EEESCCHHHHHHHHHHC--
T ss_pred CeeEEeC--hHHHHHHh---CCCCceEEEEEcCCCcEEE-------eCCCCCHHHHHHHHHHHhc
Confidence 5677777 56777777 3568999999999887765 2234 57788888877654
No 45
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=60.16 E-value=23 Score=30.29 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHH---------cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 167 AGISHKIDITGASIGKRYARTDE---------LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Ade---------iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
..+.+..|. ++.+.++|.-... ..+|..++||.+|.|..+........+ +.+++...|+.+..
T Consensus 98 ~~fpil~D~-~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr-~~~eil~~i~~l~~ 169 (224)
T 1prx_A 98 LPFPIIDDR-NRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGR-NFDEILRVVISLQL 169 (224)
T ss_dssp CSSCEEECT-TCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCC-CHHHHHHHHHHHHH
T ss_pred cCcceeecC-chHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCC-CHHHHHHHHHHHHh
Confidence 345566664 6778888764321 237999999999998887754322112 68888888877643
No 46
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=59.30 E-value=19 Score=27.60 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=49.4
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
..+.++|++..++..++..++.+.|++.|+...+...+-. +++-...+-+ |++-+.++ +.+-+
T Consensus 9 ve~sv~Plg~~~svs~~Va~~i~~l~~sGl~y~~~pm~T~IEGe~devm~vv~~~~e~~~~-g~~RV~~~-----iKid~ 82 (100)
T 2epi_A 9 AEVSIIPLGKGASVSKYVKKAIEVFKKYDLKVETNAMGTVLEGDLDEILKAFKEAHSTVLN-DVDRVVSS-----LKIDE 82 (100)
T ss_dssp EEEEEEEECBSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEEEHHHHHHHHHHHHHHHHT-TSSEEEEE-----EEEEE
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHcCCCeEecCCccEEEcCHHHHHHHHHHHHHHHHc-CCCEEEEE-----EEEEe
Confidence 5789999985457889999999999999999999886432 3566666666 88877654 55555
Q ss_pred CCC
Q 042110 209 RDS 211 (287)
Q Consensus 209 rdt 211 (287)
|..
T Consensus 83 R~d 85 (100)
T 2epi_A 83 RKD 85 (100)
T ss_dssp ESS
T ss_pred cCC
Confidence 544
No 47
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=59.25 E-value=19 Score=32.32 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=44.2
Q ss_pred CCceEEEEEecCC----------hhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEE
Q 042110 138 APIKCTVFTLVQN----------QQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAIT 197 (287)
Q Consensus 138 AP~kV~Ilpl~~~----------~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~Ii 197 (287)
.|-+|+++|-... .........+.+.|++.||+|.+-- ..--.|+..|-+.|++++=+
T Consensus 87 kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFI--Dpd~~qi~aA~~~GA~~IEL 154 (243)
T 1m5w_A 87 KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFI--DADEEQIKAAAEVGAPFIEI 154 (243)
T ss_dssp CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEE--CSCHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCcCEEEE
Confidence 4688999986421 1346778889999999999997654 23458999999999998743
No 48
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=59.16 E-value=2.3 Score=42.12 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=19.6
Q ss_pred eceEeecceehhHHHHHHHHhc
Q 042110 94 TPSVIEPSSGIDRIIYCLCEHC 115 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~~ 115 (287)
.+|+..+++|++|+++||+|+.
T Consensus 476 ~vht~~~Glgv~Rli~AlLE~~ 497 (522)
T 2cja_A 476 ELWSGCSGVGLERWAAVFLAQK 497 (522)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEeccCcHHHHHHHHHHHHc
Confidence 6888888999999999999984
No 49
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=57.71 E-value=13 Score=29.53 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH----cC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTDE----LG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade----iG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
++.+..|..+..+ ++|.-... .| .|..++||.+|.|.-+........+.+.+++.+.|+++
T Consensus 104 ~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 104 NVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp SSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred CeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 4566666246677 77764321 13 69999999999988877643333345678888888764
No 50
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=57.58 E-value=17 Score=28.49 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=47.5
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-----------HHHHHHHhHHcCCCEEEEEcCCCcEEEEE
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-----------IGKRYARTDELGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-----------IGKr~k~AdeiGiPy~IiIG~~gtVTLRd 208 (287)
..+.|+|++..++..++..++.+.|++.|+..++...+-. +++-...+- .|++-+.++ +.|-+
T Consensus 18 v~~sv~Plg~~~svs~~Va~~i~vi~~sGL~y~~~pmgT~IEGe~devm~vvk~~~e~~~-~g~~RV~t~-----iKId~ 91 (106)
T 1vk8_A 18 VSIKVVPAVEDGRLHEVIDRAIEKISSWGMKYEVGPSNTTVEGEFEEIMDRVKELARYLE-QFAKRFVLQ-----LDIDY 91 (106)
T ss_dssp EEEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEECSSCEEEEECHHHHHHHHHHHHHHHT-TTCSEEEEE-----EEEEE
T ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHHHHHHHHH-cCCCEEEEE-----EEEEe
Confidence 5889999985567889999999999999999999875432 244444455 677776654 45555
Q ss_pred CCC
Q 042110 209 RDS 211 (287)
Q Consensus 209 rdt 211 (287)
|..
T Consensus 92 R~d 94 (106)
T 1vk8_A 92 KAG 94 (106)
T ss_dssp ETT
T ss_pred cCC
Confidence 533
No 51
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=56.21 E-value=18 Score=33.01 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=41.7
Q ss_pred CCceEEEEEecCC----------hhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEE
Q 042110 138 APIKCTVFTLVQN----------QQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCA 195 (287)
Q Consensus 138 AP~kV~Ilpl~~~----------~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~ 195 (287)
.|-+|+++|-... .........+.+.|++.||+|.+-- ..--.|+..|-+.|++++
T Consensus 115 kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFI--Dpd~~qI~aA~~~GAd~I 180 (278)
T 3gk0_A 115 RPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFI--DPDEAQIRAAHETGAPVI 180 (278)
T ss_dssp CCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEE--CSCHHHHHHHHHHTCSEE
T ss_pred CCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCcCEE
Confidence 4688999985421 1235677888899999999776544 234579999999999986
No 52
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=54.32 E-value=26 Score=28.31 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHcC---------CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 167 AGISHKIDITGASIGKRYARTDELG---------VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~AdeiG---------iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
..+.+..|. +..+.++|.-....+ .|..++||.+|+|.-+.... ...-.++++++.|+++.
T Consensus 108 ~~f~~l~D~-~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~--~~~~~~~~il~~l~~l~ 177 (179)
T 3ixr_A 108 FTFPLVSDS-DAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQV--KVPGHAEEVLNKLKAHA 177 (179)
T ss_dssp CCSCEEECT-TCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSC--CSTTHHHHHHHHHHHHH
T ss_pred CceEEEECC-chHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCC--CCCCCHHHHHHHHHHHh
Confidence 456666664 566776665432211 57799999999988777432 23345778887777654
No 53
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=53.90 E-value=55 Score=24.95 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 188 DELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 188 deiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
.-.++|..++||.+|.+.-+.. +.+++.+.|++++.+
T Consensus 106 ~v~~~P~~~lid~~G~i~~~~~--------~~~~l~~~l~~l~~~ 142 (152)
T 2lrn_A 106 CIVGFPHIILVDPEGKIVAKEL--------RGDDLYNTVEKFVNG 142 (152)
T ss_dssp TCCSSCEEEEECTTSEEEEECC--------CTTHHHHHHHHHHTS
T ss_pred CCCcCCeEEEECCCCeEEEeeC--------CHHHHHHHHHHHHhh
Confidence 3458999999998888766542 345677777776664
No 54
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=53.81 E-value=70 Score=24.27 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=42.3
Q ss_pred HHHHHHHHCC--CeEEEeCCCCCHHHHHHHhH--HcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 159 VISESLSVAG--ISHKIDITGASIGKRYARTD--ELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 159 ~Ia~~LR~~G--i~v~vD~s~~SIGKr~k~Ad--eiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
.+.+.+++.| +.+..|. +.....-++... -.++|..++||.+|.+.-+- .|. .+.+++.+.|+++..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~--~g~---~~~~~l~~~l~~l~~~~~ 143 (151)
T 3raz_A 70 NIGNFLKQTPVSYPIWRYT-GANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTI--TGE---VNEKSLTDAVKLAHSKCR 143 (151)
T ss_dssp HHHHHHHHSCCSSCEEEEC-CSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEEC--CSC---CCHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCCceEecC-ccchHHHHHHhCCccCCCCEEEEECCCCcEEEEE--CCC---CCHHHHHHHHHHHHHHhh
Confidence 3445555555 4444554 334444444444 56899999999988875543 332 357888888888776543
No 55
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=52.94 E-value=65 Score=23.90 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCeEEEeCCCCC--HHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 158 KVISESLSVAGISHKIDITGAS--IGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 158 ~~Ia~~LR~~Gi~v~vD~s~~S--IGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+..+...-.++.+..|.. .. +.++|. -.++|..+++|.+|.+.-+.. +. -.++++++.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~---i~~~P~~~lid~~G~i~~~~~--g~---~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 80 LKFIRSKKIGGWLNVRDSK-NHTDFKITYD---IYATPVLYVLDKNKVIIAKRI--GY---ENLDDFLVQYEKSL 145 (148)
T ss_dssp HHHHHHHTCTTSEEEECTT-CCCCHHHHHC---CCSSCEEEEECTTCBEEEESC--CG---GGHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCceEEeccc-cchhHHHhcC---cCCCCEEEEECCCCcEEEecC--CH---HHHHHHHHHHHHHh
Confidence 3333333333377777763 34 777765 468999999999888766543 32 34566666655543
No 56
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=52.64 E-value=26 Score=27.71 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=37.6
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH--------cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTDE--------LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade--------iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
.+.+..|. ++++.++|.-... ...|-.++||.+|.|.-+.....-..+.+.+++.+.|+.|
T Consensus 88 ~~p~l~D~-~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 88 NFTILSDY-NREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp CSEEEECT-TSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred cEEEEEcC-CcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 45555555 6777777642111 1245678899999987766543322345678888877654
No 57
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=52.18 E-value=29 Score=29.49 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=51.9
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCC--CeEEEeCCCCCHHHHHHHhHH---------cCCCEEEEEcCCCcEEEEE
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAG--ISHKIDITGASIGKRYARTDE---------LGVPCAITVDSTSSVTIRE 208 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~G--i~v~vD~s~~SIGKr~k~Ade---------iGiPy~IiIG~~gtVTLRd 208 (287)
+++.-+..+....+..++..+.+.+...+ +.+..|. ++.+.++|.-... ..+|..++||.+|.|..+.
T Consensus 66 v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~-~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~ 144 (220)
T 1xcc_A 66 CKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDE-SRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 144 (220)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECT-TSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECc-hhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence 44444444332233344444444433334 5555554 6778888865321 2378999999999988776
Q ss_pred CCCCCeeeEeHHHHHHHHHHHh
Q 042110 209 RDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 209 rdt~~Q~~V~leel~~~l~~l~ 230 (287)
....... -+.+++...|+.+.
T Consensus 145 ~~~~~~g-~~~~ell~~i~~lq 165 (220)
T 1xcc_A 145 LYPATTG-RNAHEILRVLKSLQ 165 (220)
T ss_dssp EECTTBC-CCHHHHHHHHHHHH
T ss_pred ecCCCCC-CCHHHHHHHHHHHH
Confidence 5322211 26888888887764
No 58
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=50.63 E-value=14 Score=33.58 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCC--CHHHHHHHhHHcCCCEEEEEcCCCc
Q 042110 153 YEEVAKVISESLSVAGISHKIDITGA--SIGKRYARTDELGVPCAITVDSTSS 203 (287)
Q Consensus 153 ~~~~A~~Ia~~LR~~Gi~v~vD~s~~--SIGKr~k~AdeiGiPy~IiIG~~gt 203 (287)
......++...|++.|+.+.+..... ......+.+...++..+|++|.|||
T Consensus 40 ~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 92 (337)
T 2qv7_A 40 FKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGT 92 (337)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHH
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchH
Confidence 44667889999999999988776432 2333334455568899999998443
No 59
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=49.64 E-value=30 Score=29.95 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCeEEEeCCCCCHHHHHHHhH---------HcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 168 GISHKIDITGASIGKRYARTD---------ELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad---------eiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+.+..|. ++.+.++|.-.. ...+|..++||.+|.|..+........+ +.+++...|+.+.
T Consensus 95 ~fpil~D~-~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr-~~~eilr~l~~Lq 164 (233)
T 2v2g_A 95 PYPIIADE-TRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGR-NFSEILRVIDSLQ 164 (233)
T ss_dssp SSCEEECT-TCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCC-CHHHHHHHHHHHH
T ss_pred ceEEEECC-hHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCC-CHHHHHHHHHHHH
Confidence 46666664 677888876432 1247999999999998877653222112 5888888887764
No 60
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=49.38 E-value=69 Score=24.20 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=39.3
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 167 AGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
..+.+..|. +..+.++|. -.++|..++||.+|.+.-+.. |. .+.+++.+.|..++.+
T Consensus 83 ~~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~--G~---~~~~~l~~~l~~ll~~ 139 (151)
T 2f9s_A 83 VNFPVVLDT-DRQVLDAYD---VSPLPTTFLINPEGKVVKVVT--GT---MTESMIHDYMNLIKPG 139 (151)
T ss_dssp CCSCEEEET-TSHHHHHTT---CCSSCEEEEECTTSEEEEEEE--SC---CCHHHHHHHHHHHSCC
T ss_pred CCceEEECC-chHHHHhcC---CCCCCeEEEECCCCcEEEEEe--CC---CCHHHHHHHHHHHHhh
Confidence 345666665 456666654 468999999998888765544 22 3578888888887764
No 61
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=48.76 E-value=34 Score=26.39 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCCeEEEeC-CCCCHHHHHHHhHH-cCCC--EEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 167 AGISHKIDI-TGASIGKRYARTDE-LGVP--CAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 167 ~Gi~v~vD~-s~~SIGKr~k~Ade-iGiP--y~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
..+.+..|. .+..+.++|.-... .|+| ..++||.+|.|.-+...... ..-.++++.+.|+++
T Consensus 93 ~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~-~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 93 FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPG-EVRDQRLWTDALAAL 158 (160)
T ss_dssp CCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTT-CCCCHHHHHHHHHHT
T ss_pred CCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCC-CCCCHHHHHHHHHHh
Confidence 356666664 24567666653211 2788 89999999988777655322 233577777777653
No 62
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=48.38 E-value=14 Score=33.43 Aligned_cols=97 Identities=9% Similarity=0.100 Sum_probs=55.7
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCC-H-------------HHHHHH-----hHHcCCCEEEEEcC
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGAS-I-------------GKRYAR-----TDELGVPCAITVDS 200 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~S-I-------------GKr~k~-----AdeiGiPy~IiIG~ 200 (287)
-++.|+.=..+.+....+.++.+.|++.|+.+.++..... + |..+.. +...++.++|++|.
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG 84 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 84 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence 3566664333334567789999999999999988764321 1 101211 24457899999998
Q ss_pred C-------------C--cEEEEECCCCC-eeeEeHHHHHHHHHHHhcCCCChH
Q 042110 201 T-------------S--SVTIRERDSKD-QMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 201 ~-------------g--tVTLRdrdt~~-Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
| + .+-| +..+.. -..+..+++.+.+..+++|...++
T Consensus 85 DGT~l~a~~~~~~~~~pvlgi-~~G~~gfl~~~~~~~~~~~~~~i~~g~~~~~ 136 (307)
T 1u0t_A 85 DGTFLRAAELARNASIPVLGV-NLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136 (307)
T ss_dssp HHHHHHHHHHHHHHTCCEEEE-ECSSCCSSCSEEGGGHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHhccCCCCEEEE-eCCCCccCcccCHHHHHHHHHHHHcCCcEEE
Confidence 2 2 2444 444431 113456888888888888876653
No 63
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=47.96 E-value=42 Score=26.41 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=39.5
Q ss_pred CCeEEEeCCCCCHHHHHHHhH-HcC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 168 GISHKIDITGASIGKRYARTD-ELG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad-eiG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
.+.+..|..+..+.++|.-.. +.| +|..++||.+|.|.-+.........-..+++.+.|++
T Consensus 102 ~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 102 NVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp SCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred ceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 466666553567777776431 112 7999999999999887664433334467777777654
No 64
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=47.79 E-value=29 Score=32.70 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=66.5
Q ss_pred ccCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCC-CCHH--------H---HHH----HhHH--cCC
Q 042110 131 FRFPPLVAPIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITG-ASIG--------K---RYA----RTDE--LGV 192 (287)
Q Consensus 131 l~lP~~iAP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~-~SIG--------K---r~k----~Ade--iGi 192 (287)
|.|+. .|-.|.|+.=..+++....+.+|++-|.+.|+.|.+|..- ..++ . ++. ..++ ..+
T Consensus 32 l~w~~--~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (365)
T 3pfn_A 32 LTWNK--SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQI 109 (365)
T ss_dssp EEESS--CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTC
T ss_pred cccCC--CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCC
Confidence 55553 3456777765555678899999999999999999998631 1111 0 000 0011 356
Q ss_pred CEEEEEcCCCcEE--EE------------ECCC-CCeeeEeHHHHHHHHHHHhcCCCChH
Q 042110 193 PCAITVDSTSSVT--IR------------ERDS-KDQMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 193 Py~IiIG~~gtVT--LR------------drdt-~~Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
-++|++|.|||+- .| ++.+ |=-..+..+++.+.|.++++|.-.++
T Consensus 110 DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~vl~g~~~v~ 169 (365)
T 3pfn_A 110 DFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVV 169 (365)
T ss_dssp SEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHHHHHSCCBEE
T ss_pred CEEEEEcChHHHHHHHHHhccCCCCEEEEcCCCCccceeecHHHHHHHHHHHHcCCCeEE
Confidence 7999999866441 11 1111 21235678899999999998877665
No 65
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=47.78 E-value=90 Score=23.72 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCeEEEeCCCCCHHHHHHHh---HHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 168 GISHKIDITGASIGKRYART---DELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~A---deiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
.+.+..|. ..+.+.|... .-.++|..++||.+|.+.-+.... .+.+++.+.|.+++..
T Consensus 92 ~~~~~~~~--~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~-----~~~~~l~~~l~~~l~~ 152 (165)
T 3or5_A 92 IYPVMMAT--PELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP-----RSKADFDRIVKMALGA 152 (165)
T ss_dssp CSCEEECC--HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC-----CCHHHHHHHHHHHHC-
T ss_pred CCceEecC--HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC-----CCHHHHHHHHHHHHhh
Confidence 45555544 3566666544 467899999999988886554332 3578888888887764
No 66
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=47.22 E-value=88 Score=23.48 Aligned_cols=65 Identities=6% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHHHCCCe--EEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 160 ISESLSVAGIS--HKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 160 Ia~~LR~~Gi~--v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
+.+.+++.|+. +..|. +..+.++|. -.++|..++||.+|.+.-+... ..+.+++.+.|..++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~d~-~~~~~~~~~---i~~~P~~~lid~~G~i~~~~~g-----~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 77 VRQYVKDYGLPFTVMYDA-DKAVGQAFG---TQVYPTSVLIGKKGEILKTYVG-----EPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp HHHHHHHTTCCSEEEECS-SCHHHHHHT---CCSSSEEEEECSSSCCCEEEES-----SCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCceEEcCc-hHHHHHHcC---CCccCeEEEECCCCcEEEEEcC-----CCCHHHHHHHHHHHHHhh
Confidence 34445555654 44443 455666654 4689999999988876544332 246788888888877753
No 67
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=46.78 E-value=19 Score=32.63 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=35.9
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCC
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTS 202 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~g 202 (287)
..+++|+.-..+ + +.++.+.|++.|+.+.++...... ..++-++|++|.||
T Consensus 29 ~mki~iv~~~~~-~----~~~l~~~L~~~g~~v~~~~~~~~~--------~~~~DlvIvlGGDG 79 (278)
T 1z0s_A 29 GMRAAVVYKTDG-H----VKRIEEALKRLEVEVELFNQPSEE--------LENFDFIVSVGGDG 79 (278)
T ss_dssp -CEEEEEESSST-T----HHHHHHHHHHTTCEEEEESSCCGG--------GGGSSEEEEEECHH
T ss_pred ceEEEEEeCCcH-H----HHHHHHHHHHCCCEEEEccccccc--------cCCCCEEEEECCCH
Confidence 356777764332 2 889999999999999988753221 12688999999833
No 68
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=44.92 E-value=41 Score=27.68 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=45.5
Q ss_pred CCCceEEEEEecCC----hhHHHHHHHHHHHHHHCCCeEE----EeCCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 137 VAPIKCTVFTLVQN----QQYEEVAKVISESLSVAGISHK----IDITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 137 iAP~kV~Ilpl~~~----~e~~~~A~~Ia~~LR~~Gi~v~----vD~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
..+.+|+|+..++. .....-...|+..|++.|+.+. +.|. ..|.+.+++|-..++-.+||-|-
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 34578999998851 1122345678999999998763 5555 78999999887668999999986
No 69
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=44.67 E-value=67 Score=26.72 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEEe-CCC---C----CHHHHHHHhHHcCCCEEEEEcC
Q 042110 149 QNQQYEEVAKVISESLSVAGISHKID-ITG---A----SIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 149 ~~~e~~~~A~~Ia~~LR~~Gi~v~vD-~s~---~----SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
+++-....|..+.+.|++.|+.|.+- .++ . ++..|.+.|++.++-+.|-|=.
T Consensus 27 Ekdi~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~ 86 (180)
T 3qay_A 27 EYQYNKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHL 86 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeee
Confidence 33445578999999999999996432 222 1 3999999999999999988864
No 70
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=44.38 E-value=66 Score=23.87 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=27.1
Q ss_pred hHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 187 TDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 187 AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
..-.++|..+++|.+|.+.-+.. +.+++.+.|.++++
T Consensus 110 ~~v~~~P~~~lid~~G~i~~~~~--------~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 110 YAILTLPTNILLSPTGKILARDI--------QGEALTGKLKELLK 146 (148)
T ss_dssp TTCCSSSEEEEECTTSBEEEESC--------CHHHHHHHHHHHC-
T ss_pred cCCCCcCEEEEECCCCeEEEecC--------CHHHHHHHHHHHHc
Confidence 34569999999998887765543 67778888877664
No 71
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=43.48 E-value=21 Score=32.23 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCceEEEEEecCCh--------hHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEE
Q 042110 138 APIKCTVFTLVQNQ--------QYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCA 195 (287)
Q Consensus 138 AP~kV~Ilpl~~~~--------e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~ 195 (287)
.|-+|+++|-...+ -.......+.+.|++.||+|.+-- ..--.|+..|-+.|++++
T Consensus 86 kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFI--Dpd~~qi~aA~~~GAd~I 149 (260)
T 3o6c_A 86 KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFI--NPSLEDIEKSKILKAQFI 149 (260)
T ss_dssp CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEE--CSCHHHHHHHHHTTCSEE
T ss_pred CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHhCCCEE
Confidence 46789988854310 023455778889999999886544 234579999999999986
No 72
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=43.04 E-value=1e+02 Score=23.06 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=39.2
Q ss_pred HHHHHCC--CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCCC
Q 042110 162 ESLSVAG--ISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 162 ~~LR~~G--i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~~ 234 (287)
+.+++.+ +.+..|. +..+.++| .-.++|..++||.+|.+.-+...... -..+++.+.|++...+..
T Consensus 78 ~~~~~~~~~~~~~~d~-~~~~~~~~---~v~~~P~~~lid~~G~i~~~~~g~~~---~~~~~l~~~i~~~~~~~~ 145 (152)
T 3gl3_A 78 KFLAQVPAEFTVAFDP-KGQTPRLY---GVKGMPTSFLIDRNGKVLLQHVGFRP---ADKEALEQQILAALGGNE 145 (152)
T ss_dssp HHHHHSCCCSEEEECT-TCHHHHHT---TCCSSSEEEEECTTSBEEEEEESCCT---TTHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCceeECC-cchhHHHc---CCCCCCeEEEECCCCCEEEEEccCCC---cCHHHHHHHHHHHHcccc
Confidence 3344444 4444444 34454444 34689999999998988776654322 235778888877766543
No 73
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=42.97 E-value=16 Score=30.96 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=41.0
Q ss_pred HCCCeEEEeCCCCCHHHHHHHhHHc---CCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 166 VAGISHKIDITGASIGKRYARTDEL---GVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 166 ~~Gi~v~vD~s~~SIGKr~k~Adei---GiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
...+.+..|. +..+.++|.-.... ++|..++||.+|.|.-+....... .-.++++++.|+.+
T Consensus 132 ~~~~~~l~D~-~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~-~~~~~~il~~l~~l 196 (222)
T 3ztl_A 132 HMKIPLLADR-KQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPV-GRSVDETLRLLDAF 196 (222)
T ss_dssp SCSSCEEECS-SSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTB-CCCHHHHHHHHHHH
T ss_pred ccceeEEeCC-chHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCC-CCCHHHHHHHHHHh
Confidence 3456776665 56777777643222 689999999999887776544322 22477887777654
No 74
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=42.97 E-value=75 Score=26.41 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCC----CeeeEeHHHHHHHHHHHhcCCC
Q 042110 167 AGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSK----DQMRVHVDDVASIVKALTDGQR 234 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~----~Q~~V~leel~~~l~~l~~~~~ 234 (287)
..+.+..|. +..+.++|. -.++|..++||.+|.|..+-+-.. ....+..+++.+.|.+++.++.
T Consensus 123 ~~~~~l~D~-~~~~~~~~~---v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~ 190 (218)
T 3u5r_E 123 YGFPYLKDA-SQSVAKAYG---AACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD 190 (218)
T ss_dssp CCSCEEECT-TCHHHHHHT---CCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred CCccEEECC-ccHHHHHcC---CCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence 345555554 556666664 457899999999998876654321 2234567889899988887643
No 75
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=42.22 E-value=72 Score=26.22 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCceEEEEEecCC--hhHHHHHHHHHHHHHHCCCeEE----EeCCCCCHHHHHHHhHHc-CCCEEEEEcC
Q 042110 138 APIKCTVFTLVQN--QQYEEVAKVISESLSVAGISHK----IDITGASIGKRYARTDEL-GVPCAITVDS 200 (287)
Q Consensus 138 AP~kV~Ilpl~~~--~e~~~~A~~Ia~~LR~~Gi~v~----vD~s~~SIGKr~k~Adei-GiPy~IiIG~ 200 (287)
.+.+|+|+..++. .....-+.-|++.|++.|+.+. +.|....|.+.++.|-.. ++.++||-|-
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 3568999998863 1233456779999999998764 333345799999998776 7999999997
No 76
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=41.25 E-value=29 Score=26.47 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=55.7
Q ss_pred ceEEEEEecC-ChhHHHHHHHHHHHHHHCCCeEEEeCCC----C-C-------HHHHHHHhHHcCCCEEEEEcCCCcEEE
Q 042110 140 IKCTVFTLVQ-NQQYEEVAKVISESLSVAGISHKIDITG----A-S-------IGKRYARTDELGVPCAITVDSTSSVTI 206 (287)
Q Consensus 140 ~kV~Ilpl~~-~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~----~-S-------IGKr~k~AdeiGiPy~IiIG~~gtVTL 206 (287)
..+.++|++. .++..++..++.+.|++.|+.+.+...+ + . +++-...+-+.|++-+.++ +.+
T Consensus 4 ve~sv~Plg~~~~svs~~Va~~i~~i~~sgl~y~~~pm~T~iEG~e~devm~vv~~~~e~~~~~G~~Rv~~~-----iKi 78 (99)
T 1lxn_A 4 AELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTT-----LKI 78 (99)
T ss_dssp EEEEEEESSCSSSCCHHHHHHHHHHHTTSSCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEEE-----EEE
T ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHcCCCeEeCCCeeEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEE-----EEE
Confidence 4788999984 3578899999999999999999998853 2 2 3556666777898877664 555
Q ss_pred EECCCCCeeeEeHHHHHHHHH
Q 042110 207 RERDSKDQMRVHVDDVASIVK 227 (287)
Q Consensus 207 Rdrdt~~Q~~V~leel~~~l~ 227 (287)
-+|..+ ..++++-++.+.
T Consensus 79 d~R~d~---~~~~~~Kv~~v~ 96 (99)
T 1lxn_A 79 DDRRDA---DRGLRDKVESVK 96 (99)
T ss_dssp EEESSS---CCCHHHHHHHHH
T ss_pred EecCCC---CCCHHHHHHHHH
Confidence 555443 234555554443
No 77
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=40.43 E-value=50 Score=26.14 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=38.5
Q ss_pred CeEEEeCCCCCHHHHHHHh-HHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 169 ISHKIDITGASIGKRYART-DELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 169 i~v~vD~s~~SIGKr~k~A-deiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
+.+..|. +..+.+.|.-. +..++|..++||.+|.|.-+..... ....+++.+.|+.++.+
T Consensus 121 ~~~~~d~-~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~---~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 121 LGYFNDQ-KAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPA---EWASEDALKLIRAATGK 181 (186)
T ss_dssp TCCEECT-TCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCC---CTTSHHHHHHHHHHHC-
T ss_pred CceEECC-cchHHHHhccccccCCCCEEEEECCCCCEEEEEecCC---ccCHHHHHHHHHHHhcc
Confidence 4555554 56666666542 1138999999999998876654321 12357788888887765
No 78
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=39.75 E-value=64 Score=25.08 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=37.0
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcC----CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTDELG----VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiG----iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. +..+.++|.- .| +|..++||.+|.|.-+...... ..-.++++++.|+++-.
T Consensus 87 ~~~~~~d~-~~~~~~~~~v---~~~~~~~P~~~lid~~G~i~~~~~g~~~-~~~~~~~il~~l~~l~~ 149 (161)
T 3drn_A 87 PFILVSDP-DKKIRELYGA---KGFILPARITFVIDKKGIIRHIYNSQMN-PANHVNEALKALKQIKE 149 (161)
T ss_dssp CSEEEECT-TSHHHHHTTC---CCSSSCCCEEEEECTTSBEEEEEECSSC-TTHHHHHHHHHHHHHHH
T ss_pred CceEEECC-cHHHHHHcCC---CCcCcccceEEEECCCCEEEEEEecCCC-CCcCHHHHHHHHHHhhh
Confidence 35555553 5667666654 37 9999999999988766554211 12346677777766533
No 79
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=38.84 E-value=39 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=41.0
Q ss_pred HCCCeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 166 VAGISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 166 ~~Gi~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
...+.+..|. +..+.++|.-... .++|..++||.+|.|.-+....... .-+.+++.+.|+++..
T Consensus 91 ~~~~~~~~d~-~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~-~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 91 SIEYIMIGDP-SQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGI-GRDASTLINKVKAAQY 157 (187)
T ss_dssp TCCSEEEECT-TCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTS-CCCTTHHHHHHHHHHH
T ss_pred CCCceEEECC-chHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCC-CCCHHHHHHHHHHHhh
Confidence 4557776664 5666666653211 1789999999999887766543221 1257788888877654
No 80
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=38.77 E-value=43 Score=28.45 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH--cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTDE--LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade--iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. ++.+.++|.-.++ ..+|..++||.+|.|.-+...... ..-..+++.+.|+.+..
T Consensus 121 ~fp~l~D~-~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~-~~~~~~ell~~l~~L~~ 184 (221)
T 2c0d_A 121 EFTLVSDI-NKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLP-IGRNVQEVLRTIDSIIH 184 (221)
T ss_dssp SSEEEECT-TSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTT-CCCCHHHHHHHHHHHHH
T ss_pred ceEEEECC-chHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCCC-CCCCHHHHHHHHHHHhh
Confidence 45666664 5677777653211 247999999999988877644321 12367888888877653
No 81
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=37.96 E-value=52 Score=26.63 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=41.7
Q ss_pred HCCCeEEEeCCCCCHHHHHHHh--HHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 166 VAGISHKIDITGASIGKRYART--DELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 166 ~~Gi~v~vD~s~~SIGKr~k~A--deiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
...+.+..|. +..+.++|.-. +-.++|..++||.+|.|.-+....... .-+.+++.+.|+++..+
T Consensus 105 ~~~~~~~~d~-~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~-~~~~~~l~~~l~~l~~~ 171 (195)
T 2bmx_A 105 TLPFPMLSDI-KRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSV-GRNVDEVLRVLDALQSD 171 (195)
T ss_dssp GCCSCEEECT-TSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTC-CCCHHHHHHHHHHHHC-
T ss_pred CCceeEEeCC-chHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCCC-CCCHHHHHHHHHHHhhC
Confidence 3456666664 56676666532 111789999999989887766543211 12578898888887763
No 82
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=37.46 E-value=24 Score=31.23 Aligned_cols=76 Identities=9% Similarity=0.153 Sum_probs=47.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCc-----------------E
Q 042110 142 CTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSS-----------------V 204 (287)
Q Consensus 142 V~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gt-----------------V 204 (287)
++|+.= .+.+....+.++.+.|++.|+.+ + ..++.++|++|.||| +
T Consensus 3 i~ii~n-~~~~~~~~~~~l~~~l~~~g~~v--~--------------~~~~D~vv~lGGDGT~l~aa~~~~~~~~~~Pil 65 (272)
T 2i2c_A 3 YMITSK-GDEKSDLLRLNMIAGFGEYDMEY--D--------------DVEPEIVISIGGDGTFLSAFHQYEERLDEIAFI 65 (272)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHHHTTSSCEE--C--------------SSSCSEEEEEESHHHHHHHHHHTGGGTTTCEEE
T ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHCCCEe--C--------------CCCCCEEEEEcCcHHHHHHHHHHhhcCCCCCEE
Confidence 444432 23455677888999999999977 2 246778888876211 3
Q ss_pred EEEECCCCC-eeeEeHHHHHHHHHHHhcCCCC
Q 042110 205 TIRERDSKD-QMRVHVDDVASIVKALTDGQRT 235 (287)
Q Consensus 205 TLRdrdt~~-Q~~V~leel~~~l~~l~~~~~~ 235 (287)
-| +..+.. -..+..+++.+.+..+++|...
T Consensus 66 GI-n~G~lgfl~~~~~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 66 GI-HTGHLGFYADWRPAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp EE-ESSSCCSSCCBCGGGHHHHHHHHHTTCCE
T ss_pred EE-eCCCCCcCCcCCHHHHHHHHHHHHcCCCE
Confidence 44 443311 1233467788888888887653
No 83
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=37.20 E-value=79 Score=27.67 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHH----cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 167 AGISHKIDITGASIGKRYARTDE----LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Ade----iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
..+.+..|. ++.+.++|.-... .++|..++||.+|.|..+...... ..-+.+++...|..+.
T Consensus 96 i~fPil~D~-~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~-~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 96 IPFPIIADP-QGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPME-LGRLVDEILRIVKALK 161 (249)
T ss_dssp CCSCEEECT-TSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTT-BCCCHHHHHHHHHHHH
T ss_pred CceeEEECC-chHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCc-ccchhHHHHHHHHHHH
Confidence 345555554 6778887764321 278999999999988776543222 1125788888887764
No 84
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=37.05 E-value=81 Score=26.20 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHC-CCeEEEeC---CCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 152 QYEEVAKVISESLSVA-GISHKIDI---TGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~-Gi~v~vD~---s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
-....|..+.+.|++. |+.|.+-- ..-++..|.+.|++.++.+.|-|=.
T Consensus 29 ~~l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~ 81 (179)
T 1jwq_A 29 FNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHA 81 (179)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEcc
Confidence 3457899999999999 99998643 2457999999999999999888743
No 85
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=36.51 E-value=1.3e+02 Score=22.69 Aligned_cols=61 Identities=10% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHCCCe--EEEeCC--CCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 160 ISESLSVAGIS--HKIDIT--GASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 160 Ia~~LR~~Gi~--v~vD~s--~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+.+.+++.|+. +..|.. ...+.++| .-.++|..++||.+|.+.-+.. +.+++.+.|.++++
T Consensus 84 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~~--------~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 84 WKDAIKRDTLDWEQVCDFGGLNSEVAKQY---SIYKIPANILLSSDGKILAKNL--------RGEELKKKIENIVE 148 (150)
T ss_dssp HHHHHHHTTCCSEEECCSCGGGCHHHHHT---TCCSSSEEEEECTTSBEEEESC--------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceEEEcCcccchHHHHHc---CCCccCeEEEECCCCEEEEccC--------CHHHHHHHHHHHHh
Confidence 44444555543 333331 23455544 3468999999999888766552 56677777776654
No 86
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=36.16 E-value=41 Score=30.38 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCC-C-CHHHHHHHhHHcCCCEEEEEcCCC
Q 042110 155 EVAKVISESLSVAGISHKIDITG-A-SIGKRYARTDELGVPCAITVDSTS 202 (287)
Q Consensus 155 ~~A~~Ia~~LR~~Gi~v~vD~s~-~-SIGKr~k~AdeiGiPy~IiIG~~g 202 (287)
....++...|++.|+.+.+.... . ......+.+...++..+|++|.||
T Consensus 44 ~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDG 93 (332)
T 2bon_A 44 LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDG 93 (332)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccch
Confidence 45678899999999999877543 2 233333445556889999999833
No 87
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=35.82 E-value=88 Score=23.69 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHHCC--CeEEEeCCCC----CHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 160 ISESLSVAG--ISHKIDITGA----SIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 160 Ia~~LR~~G--i~v~vD~s~~----SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
+.+.+++.| +.+.+|.... .+.++| .-.++|..++||.+|.+.-+.... .+.+++.+.|.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~~g~-----~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 83 LKAFLHEYRIKFPVGVDQPGDGAMPRTMAAY---QMRGTPSLLLIDKAGDLRAHHFGD-----VSELLLGAEIATLLGE 153 (158)
T ss_dssp HHHHHHHTTCCSCEEEECCCSSSSCHHHHHT---TCCSSSEEEEECTTSEEEEEEESC-----CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCceEEEcCccchhhHHHHHHc---CCCCCCEEEEECCCCCEEEEEeCC-----CCHHHHHHHHHHHhcc
Confidence 344444544 4566676432 255554 457999999999999876655432 3567888888887764
No 88
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=35.58 E-value=1.2e+02 Score=23.42 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCeE----EEeCCCCCHHHHHHHh-------------HHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHH
Q 042110 159 VISESLSVAGISH----KIDITGASIGKRYART-------------DELGVPCAITVDSTSSVTIRERDSKDQMRVHVDD 221 (287)
Q Consensus 159 ~Ia~~LR~~Gi~v----~vD~s~~SIGKr~k~A-------------deiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~lee 221 (287)
.+.+-+++.|+.. .+.+.+..+-++|... .-.++|..++||.+|.|.-+...... .+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~---~~~~~ 162 (174)
T 1xzo_A 86 QLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN---TPYDD 162 (174)
T ss_dssp HHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS---CCHHH
T ss_pred HHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC---CCHHH
Confidence 3445556666643 2222244555555431 12568889999999988766554321 34788
Q ss_pred HHHHHHHHhcC
Q 042110 222 VASIVKALTDG 232 (287)
Q Consensus 222 l~~~l~~l~~~ 232 (287)
+.+.|+++++.
T Consensus 163 l~~~l~~ll~~ 173 (174)
T 1xzo_A 163 IISDVKSASTL 173 (174)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHhc
Confidence 88888887754
No 89
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=35.18 E-value=17 Score=32.22 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=51.7
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHH---------HHhHHcCCCEEEEEcCCCc--------
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRY---------ARTDELGVPCAITVDSTSS-------- 203 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~---------k~AdeiGiPy~IiIG~~gt-------- 203 (287)
++.|+.=..+......+.++.+.|++.|+.+.++... ...+ ..+...++.++|++|.|||
T Consensus 7 ki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~~~ 83 (292)
T 2an1_A 7 CIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQI---AHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTL 83 (292)
T ss_dssp EEEEECC-------CHHHHHHHHHHHTTCEEEEEHHH---HHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHHHH
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecch---hhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHHHh
Confidence 4555532222345567889999999999999886421 1110 1223457899999998221
Q ss_pred -------EEEEECCCC-CeeeEeHHHHHHHHHHHhcCCCChH
Q 042110 204 -------VTIRERDSK-DQMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 204 -------VTLRdrdt~-~Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
+-| +..|. --.++..+++.+.+..+++|...++
T Consensus 84 ~~~~~P~lGI-~~Gt~gfla~~~~~~~~~al~~i~~g~~~~~ 124 (292)
T 2an1_A 84 ARYDINVIGI-NRGNLGFLTDLDPDNALQQLSDVLEGRYISE 124 (292)
T ss_dssp TTSSCEEEEB-CSSSCCSSCCBCTTSHHHHHHHHHTTCEEEE
T ss_pred hcCCCCEEEE-ECCCcccCCcCCHHHHHHHHHHHHcCCCEEE
Confidence 333 22221 1112345778888888888765443
No 90
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=35.04 E-value=26 Score=31.65 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.1
Q ss_pred ceEeecceehhHHHHHHHH
Q 042110 95 PSVIEPSSGIDRIIYCLCE 113 (287)
Q Consensus 95 P~VIe~S~GIeRii~aLlE 113 (287)
|+. +.++|+||+++.+..
T Consensus 257 P~~-G~glGieRL~mll~g 274 (294)
T 1nnh_A 257 PSA-GAGIGVERLVRFIVG 274 (294)
T ss_dssp CEE-EEEEEHHHHHHHHHT
T ss_pred Cce-EEEEcHHHHHHHHhC
Confidence 777 999999999977754
No 91
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=34.93 E-value=55 Score=27.25 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=46.2
Q ss_pred CCceEEEEEecCC---------hhHHHHHHHHHHHHHHCCCeEE----EeCCCCCHHHHHHHhHHc-CCCEEEEEcC
Q 042110 138 APIKCTVFTLVQN---------QQYEEVAKVISESLSVAGISHK----IDITGASIGKRYARTDEL-GVPCAITVDS 200 (287)
Q Consensus 138 AP~kV~Ilpl~~~---------~e~~~~A~~Ia~~LR~~Gi~v~----vD~s~~SIGKr~k~Adei-GiPy~IiIG~ 200 (287)
.++.|+|+..++. .....-+..|+..|++.|+.+. +.|.-..|...++++-.. ++-.+||-|.
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3578999999851 1123455678999999998764 334346799999988665 6999999986
No 92
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=34.92 E-value=1.5e+02 Score=23.45 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCC----CeeeEeHHHHHHHHHHHhcCC
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSK----DQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~----~Q~~V~leel~~~l~~l~~~~ 233 (287)
.+.+..|. +..+.++|. -.++|..++||.+|.|.-+..... .....+.+++.+.|.+++++.
T Consensus 111 ~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 111 PFPYLYDE-TQEVAKAYD---AACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp CSCEEECS-SCHHHHHHT---CCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CceEEECC-chHHHHHhC---CCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 45555554 556666663 457899999999998877654221 112346788888888887753
No 93
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=34.57 E-value=1.5e+02 Score=22.37 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred CeEEEeCCCCC------HHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 169 ISHKIDITGAS------IGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 169 i~v~vD~s~~S------IGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
+.+.+|.. .. +.++| .-.++|..++||.+|.+.-+.... ++.+++.+.|.+++++
T Consensus 96 ~~~~~d~~-~~~~~~~~~~~~~---~v~~~P~~~lid~~G~i~~~~~g~-----~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 96 FPVAVDMP-REGQRIPSTMKKY---RLEGTPSIILADRKGRIRQVQFGQ-----VDDFVLGLLLGSLLSE 156 (160)
T ss_dssp SCEEEECC-CTTCSSCHHHHHT---TCCSSSEEEEECTTSBEEEEEESC-----CCHHHHHHHHHHHHTC
T ss_pred CcEEECCc-cccchhhhHHHhc---ccCccceEEEECCCCcEEEEecCc-----CCHHHHHHHHHHHHhc
Confidence 55666663 33 55555 457999999999988877654432 3567788888887765
No 94
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=33.22 E-value=97 Score=26.96 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHCC-CeEEEe---CCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 152 QYEEVAKVISESLSVAG-ISHKID---ITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~G-i~v~vD---~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
-....|..+.+.|++.| +.|.+- +...++..|.+.|++.|+-+.|-|=.
T Consensus 31 ~~l~ia~~l~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~ 83 (234)
T 3ne8_A 31 VTLAFARALRDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHA 83 (234)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEec
Confidence 34578899999999998 888764 23457999999999999999998865
No 95
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=31.64 E-value=1.6e+02 Score=21.95 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
.+.+..|. +..+.++|. -.++|..++||.+|.+.-+-..... ...+++.+.|+++..+
T Consensus 87 ~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~g~~~---~~~~~l~~~l~~l~~~ 144 (154)
T 3kcm_A 87 TLPVLLDA-DKRVGKLYG---TTGVPETFVIDRHGVILKKVVGAME---WDHPEVIAFLNNELSK 144 (154)
T ss_dssp CCCEEECT-TCHHHHHHT---CCSBCEEEEECTTSBEEEEEESCCC---TTSHHHHHHHHTC---
T ss_pred CeeEEecC-chHHHHHhC---CCCCCeEEEECCCCcEEEEEcCCCc---cccHHHHHHHHHHHHH
Confidence 45555554 555666664 4689999999998888666544321 2346777777765553
No 96
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=31.58 E-value=1.9e+02 Score=22.75 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=38.8
Q ss_pred HHHHHHHCCCe---EEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 160 ISESLSVAGIS---HKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 160 Ia~~LR~~Gi~---v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+.+.+.+.|+. +..|. +..+.++|. -.++|..++||.+|.|.-+.... ++.+++.+.|.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~g~-----~~~~~l~~~l~~~l~ 167 (176)
T 3kh7_A 102 AIKWLNELHNPYLLSISDA-DGTLGLDLG---VYGAPETYLIDKQGIIRHKIVGV-----VDQKVWREQLAPLYQ 167 (176)
T ss_dssp HHHHHHHTTCCCSEEEEET-TCHHHHHHT---CCSSCEEEEECTTCBEEEEEESC-----CCHHHHHHHTHHHHH
T ss_pred HHHHHHHcCCCCceEEECC-cchHHHHcC---CCCCCeEEEECCCCeEEEEEcCC-----CCHHHHHHHHHHHHH
Confidence 33444455544 33454 667777664 46899999999989877655432 345666666555443
No 97
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=31.22 E-value=80 Score=25.49 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=39.6
Q ss_pred CCeEEEeCCCCCHHHHHHHhH-HcC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTD-ELG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad-eiG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. ++.+.++|.-.. +.| +|..++||.+|.|.-+....... .-+.+++.+.|+.+..
T Consensus 92 ~fp~l~D~-~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~-~~~~~~l~~~l~~l~~ 156 (186)
T 1n8j_A 92 KYAMIGDP-TGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGI-GRDASDLLRKIKAAQY 156 (186)
T ss_dssp CSEEEECT-TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTB-CCCHHHHHHHHHHHHH
T ss_pred ceeEEECC-chHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCC-CCCHHHHHHHHHHHHH
Confidence 45666664 566777765321 113 69999999999988776543211 1257888888877653
No 98
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=30.89 E-value=1.5e+02 Score=21.30 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=35.5
Q ss_pred CCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. +..+.++|. -.++|..+++|.+|.+. +-... .+.+++.+.|.++++
T Consensus 82 ~~~~~~d~-~~~~~~~~~---i~~~P~~~~id~~g~i~-~~~g~-----~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 82 TFTQLADT-DGSVWANFG---VTQQPAYAFVDPHGNVD-VVRGR-----MSQDELTRRVTALTS 135 (136)
T ss_dssp TSEEEECT-TCHHHHHTT---CCSSSEEEEECTTCCEE-EEESC-----CCHHHHHHHHHHHC-
T ss_pred ceEEEEcC-CcHHHHHcC---CCCCceEEEECCCCCEE-EEecC-----CCHHHHHHHHHHHhc
Confidence 44555554 556666653 46899999999888876 44332 346778877776653
No 99
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=30.38 E-value=82 Score=25.64 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=40.2
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 168 GISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+.+..|. +..+.++|.-... .++|..++||.+|.|.-+....... .-+.+++.+.|+.+.
T Consensus 101 ~~p~l~D~-~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~-~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 101 NIPILADK-TKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPV-GRDVDEALRLVKAFQ 164 (202)
T ss_dssp SSCEEECT-TCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTB-CCCHHHHHHHHHHHH
T ss_pred ceeEEECC-chHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCC-CCCHHHHHHHHHHhh
Confidence 45666664 5677777753211 1799999999999887775433221 236788888887765
No 100
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=30.15 E-value=66 Score=26.88 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHH--cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 167 AGISHKIDITGASIGKRYARTDE--LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Ade--iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
..+.+..|. +..+.++|.-..+ ..+|..++||.+|.|.-+....... .-+.+++.+.|+.+.
T Consensus 116 ~~fp~l~D~-~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~-~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 116 IKHTLLSDI-TKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAI-GRSVDEILRIIDAIQ 179 (213)
T ss_dssp CSSEEEECT-TSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTC-CCCHHHHHHHHHHHH
T ss_pred CCceEEECC-chHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCC-CCCHHHHHHHHHHHH
Confidence 346666664 5667777653311 2589999999999887765432211 236788888887765
No 101
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=29.39 E-value=32 Score=29.70 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 167 AGISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
..+.+..|. ++.+.++|.-... ..+|..++||.+|.|.-+....... .-.++++++.|+.+
T Consensus 141 ~~fp~l~D~-~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~-~~~~~eil~~l~~l 204 (240)
T 3qpm_A 141 MKIPLLSDL-THQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPV-GRSVDETLRLVQAF 204 (240)
T ss_dssp CSSCEEECT-TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTB-CCCHHHHHHHHHHH
T ss_pred CceeEEeCc-hHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCC-CCCHHHHHHHHHHh
Confidence 456776665 5677777754321 1469999999999987775543221 23577888777664
No 102
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=29.29 E-value=1.4e+02 Score=21.27 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCC---eEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHH
Q 042110 158 KVISESLSVAGI---SHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKA 228 (287)
Q Consensus 158 ~~Ia~~LR~~Gi---~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~ 228 (287)
..+.+.+++.|+ .+..|. +..+.++|. -.++|..+++|.+|.+.-+.... .+.+++.+.|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~g~-----~~~~~l~~~l~~ 136 (138)
T 4evm_A 72 ADFKNWYKGLDYKNLPVLVDP-SGKLLETYG---VRSYPTQAFIDKEGKLVKTHPGF-----MEKDAILQTLKE 136 (138)
T ss_dssp HHHHHHHTTCCCTTCCEEECT-TCHHHHHTT---CCSSSEEEEECTTCCEEEEEESC-----CCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCeeEEECc-chHHHHHcC---cccCCeEEEECCCCcEEEeecCC-----CcHHHHHHHHHh
Confidence 344555555554 555554 556666664 57899999999988876655432 345667666654
No 103
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=29.13 E-value=70 Score=26.99 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCceEEEEEecCCh---hHHHHHHHHHHHHHHCCCeEE----EeCCCCCHHHHHHHhHHcCCCEEEEEcC
Q 042110 138 APIKCTVFTLVQNQ---QYEEVAKVISESLSVAGISHK----IDITGASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 138 AP~kV~Ilpl~~~~---e~~~~A~~Ia~~LR~~Gi~v~----vD~s~~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
.+..|+|++.++.- +...-...|+..|++.|+.+. +.|....|.+.++++-..++..+||-|-
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 56789999988510 023456778999999998764 3343457899999886568999999996
No 104
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=28.87 E-value=31 Score=29.06 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 168 GISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
.+.+..|. +..+.++|.-... .++|..++||.+|.|.-+...... .....+++.+.|+.+..
T Consensus 121 ~fp~l~D~-~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~-~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 121 NIALLSDL-TKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLP-VGRSVEETLRLVKAFQF 185 (220)
T ss_dssp SSEEEECT-TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTT-CCCCHHHHHHHHHHHHH
T ss_pred ceEEEECC-cHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHHhhh
Confidence 45666664 5667776653211 278999999999988776654322 12367888888887764
No 105
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=28.56 E-value=50 Score=31.22 Aligned_cols=95 Identities=3% Similarity=-0.037 Sum_probs=61.8
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHC--CCeEEEeCCCCCHHHHHH----------------------HhHHcCCCE
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVA--GISHKIDITGASIGKRYA----------------------RTDELGVPC 194 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~--Gi~v~vD~s~~SIGKr~k----------------------~AdeiGiPy 194 (287)
+-+|+|+.=..+++....+.++++.|.+. |+.|.++.. ....+. .....++-+
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~---~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 117 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPD---VAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDL 117 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHH---HHHHHHTTCCSCGGGCTTSCEEEEECCHHHHHHHCSE
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCc---hhhhhhhhccccccccccccccccccchhhcccCCCE
Confidence 45688776544566778899999999998 898887642 222110 111235789
Q ss_pred EEEEcCC-------------C---cEEEEECCCC-CeeeEeHHHHHHHHHHHhcCCCChH
Q 042110 195 AITVDST-------------S---SVTIRERDSK-DQMRVHVDDVASIVKALTDGQRTWE 237 (287)
Q Consensus 195 ~IiIG~~-------------g---tVTLRdrdt~-~Q~~V~leel~~~l~~l~~~~~~w~ 237 (287)
+|++|.| + .+-| ++.+. =-..+..+++.+.+.++++|...++
T Consensus 118 VIvlGGDGTlL~aa~~~~~~~vpPiLGI-N~G~lGFLt~~~~~~~~~al~~il~g~~~~~ 176 (388)
T 3afo_A 118 LVTLGGDGTILHGVSMFGNTQVPPVLAF-ALGTLGFLSPFDFKEHKKVFQEVISSRAKCL 176 (388)
T ss_dssp EEEEESHHHHHHHHHTTTTSCCCCEEEE-ECSSCCSSCCEEGGGHHHHHHHHHTTCCEEE
T ss_pred EEEEeCcHHHHHHHHHhcccCCCeEEEE-ECCCcccCCcCChHHHHHHHHHHhcCCceEE
Confidence 9999872 2 2455 44332 1234667899999999999877554
No 106
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=28.30 E-value=47 Score=26.57 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=40.1
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCC----CCCHHHHHHHhHHcCCCEEEEEc
Q 042110 139 PIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDIT----GASIGKRYARTDELGVPCAITVD 199 (287)
Q Consensus 139 P~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s----~~SIGKr~k~AdeiGiPy~IiIG 199 (287)
.++|+|-.-+. +-..++..|+..|++.|+++.+|.. +..+...+..|-+.---+++++.
T Consensus 20 ~~dvFISy~~~--D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S 82 (154)
T 3h16_A 20 PHDIFISHAWE--DKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLS 82 (154)
T ss_dssp SEEEEEEEEGG--GTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEE
T ss_pred CceEEEECccc--ChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeC
Confidence 47899876654 2235689999999999999999874 45666677666443222344444
No 107
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=27.55 E-value=68 Score=25.80 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH--cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 168 GISHKIDITGASIGKRYARTDE--LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade--iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+.+..|. +..+.++|.-... .++|..++||.+|.|.-+....... ....+++.+.|+.+.
T Consensus 96 ~~~~l~D~-~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~-~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 96 KHTLISDI-SKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLAL-GRSVDEILRLIDALQ 158 (192)
T ss_dssp SSEEEECT-TSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSS-GGGHHHHHHHHHHHH
T ss_pred CcCeEECC-cHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCC-CCCHHHHHHHHHHHh
Confidence 45666664 5667776653211 2589999999999887776542211 225778888887765
No 108
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=27.44 E-value=1.9e+02 Score=22.67 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCC---CeeeEeHHHHHHHHHHHhcCC
Q 042110 167 AGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSK---DQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~---~Q~~V~leel~~~l~~l~~~~ 233 (287)
..+.+..|. +..+.++|. -.++|..++||.+|.|.-+-..+. .....+.+++.+.|.+++++.
T Consensus 96 ~~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 96 IFFPYLLDE-TQEVAKAYR---ALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp CCSCEEECS-SSHHHHHTT---CCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred CCceEEECC-cchHHHHcC---CCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence 346666654 556766653 457899999999898766622110 111235678888888877653
No 109
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=26.62 E-value=1.1e+02 Score=23.26 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHHHHHHCCC---eEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 160 ISESLSVAGI---SHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 160 Ia~~LR~~Gi---~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
+.+.+...++ .+..|. ...+.++|. -.++|..++||.+|.+.-+-.. ..+.+++.+.|.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~d~-~~~~~~~~~---v~~~P~~~lid~~G~i~~~~~g-----~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 91 FQKWYAGLNYPKLPVVTDN-GGTIAQNLN---ISVYPSWALIGKDGDVQRIVKG-----SINEAQALALIRNPNA 156 (164)
T ss_dssp HHHHHTTSCCTTSCEEECT-TCHHHHHTT---CCSSSEEEEECTTSCEEEEEES-----CCCHHHHHHHHHCTTC
T ss_pred HHHHHHhCCCCcceEEEcC-chHHHHHcC---CCccceEEEECCCCcEEEEEcC-----CCCHHHHHHHHHHHHH
Confidence 4444555454 466655 456666654 4689999999988877654432 2356777777776554
No 110
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=26.19 E-value=70 Score=26.65 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=39.7
Q ss_pred CCeEEEeCCCCCHHHHHHHhH-H--cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 168 GISHKIDITGASIGKRYARTD-E--LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad-e--iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+.+..|. ++.+.++|.-.. + ..+|..++||.+|.|.-+....... .-+.+++.+.|+.+.
T Consensus 113 ~fp~l~D~-~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~-~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 113 RIPLLSDL-THQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPV-GRSVDETLRLVQAFQ 176 (211)
T ss_dssp SSCEEECT-TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTB-CCCHHHHHHHHHHHH
T ss_pred ceEEEECC-chHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCC-CCCHHHHHHHHHHhh
Confidence 35666664 566777765321 1 2489999999999888776432211 126788888887765
No 111
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=26.18 E-value=67 Score=24.93 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCeEEEeCCCCCHHHHHHHhH-HcC--CCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 168 GISHKIDITGASIGKRYARTD-ELG--VPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ad-eiG--iPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
++.+..|..+..+.++|.-.. ..| .|..++||.+|.|.-+.....-....+.+++.+.|++++
T Consensus 101 ~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 101 KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp TEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred CceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 345555523566777665321 123 399999999999887775432223445788888888765
No 112
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=25.73 E-value=90 Score=27.69 Aligned_cols=50 Identities=16% Similarity=-0.021 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCC-CC-HHHHHHHhHHcCCCEEEEEcCCC
Q 042110 152 QYEEVAKVISESLSVAGISHKIDITG-AS-IGKRYARTDELGVPCAITVDSTS 202 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~Gi~v~vD~s~-~S-IGKr~k~AdeiGiPy~IiIG~~g 202 (287)
.......++...|++.|+.+.+-.+. .. .....+.+. .++..+|++|.||
T Consensus 23 ~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDG 74 (304)
T 3s40_A 23 DLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDG 74 (304)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHH
T ss_pred chHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccch
Confidence 34456678899999999998876532 22 333333343 3888999999844
No 113
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.63 E-value=1.9e+02 Score=20.94 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcC
Q 042110 159 VISESLSVAGISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDG 232 (287)
Q Consensus 159 ~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~ 232 (287)
.+.+.+...-..+.+|.....-..-.++..-.++|..+++|.+|.+.-+-. | ..+.+++.+.|++.+..
T Consensus 54 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~--G---~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 54 LVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLV--G---AEDAPELLKKVKLGVES 122 (130)
T ss_dssp HHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEE--S---CCCHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEec--C---CCCHHHHHHHHHHHHHh
Confidence 344444444445566653223333344445678999999987777654432 2 23567888888877654
No 114
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=25.15 E-value=1.9e+02 Score=21.58 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=50.5
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEe
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITG-ASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVH 218 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~-~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~ 218 (287)
+++..+.+...+. ...+.+.+++.++...+-... ..-+.-.+...-.++|..++||.+|.+.-+... ..+
T Consensus 61 v~~v~v~~d~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g-----~~~ 131 (154)
T 3ia1_A 61 VPFYVISREPRDT----REVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAG-----RAG 131 (154)
T ss_dssp CCEEEEECCTTCC----HHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEES-----BCC
T ss_pred CeEEEEeCCCccc----HHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcC-----CCC
Confidence 4555556532111 244556677777755443321 233443444455699999999998887665532 245
Q ss_pred HHHHHHHHHHHhcC
Q 042110 219 VDDVASIVKALTDG 232 (287)
Q Consensus 219 leel~~~l~~l~~~ 232 (287)
.+++.+.|+++..+
T Consensus 132 ~~~l~~~l~~~~~~ 145 (154)
T 3ia1_A 132 REALLDALLLAGAD 145 (154)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCc
Confidence 78888888876654
No 115
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=24.89 E-value=48 Score=30.71 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=21.0
Q ss_pred ceEeecceehhHHHHHHHHhccccCCCCCCCcccccccCCCC
Q 042110 95 PSVIEPSSGIDRIIYCLCEHCFYRRPSKAGDEQLNVFRFPPL 136 (287)
Q Consensus 95 P~VIe~S~GIeRii~aLlE~~~~~r~~~~~d~~r~~l~lP~~ 136 (287)
||- +.++|+||++..|.-.. .. |.++.||..
T Consensus 313 Phg-G~glGiDRLvmll~g~~-~I---------RdVi~FPr~ 343 (345)
T 3a5y_A 313 DCS-GVALGVDRLVMLALGAE-TL---------AEVIAFSVD 343 (345)
T ss_dssp SEE-EEEEEHHHHHHHHHTCS-SG---------GGGSSSCTT
T ss_pred CCc-EEEEcHHHHHHHHcCCC-cH---------heEecCCcc
Confidence 555 88999999998876431 11 346777754
No 116
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=24.87 E-value=33 Score=31.55 Aligned_cols=67 Identities=9% Similarity=-0.072 Sum_probs=37.3
Q ss_pred HHHhHHHhhccCCeEEEEEee-------CCeeEEeecceeeEeeee-------ecccCcEEeceEeecceehhHHHHHHH
Q 042110 47 EALGMKATLESKGEVEFYVRK-------LGKNVCIKKNMLLISKEK-------KKEFQRVFTPSVIEPSSGIDRIIYCLC 112 (287)
Q Consensus 47 ~~~~~~~~l~~~~~~~~~v~~-------~g~~~~i~~~~v~~~~~~-------~~~~~~~~~P~VIe~S~GIeRii~aLl 112 (287)
+++++.+.|+.-|.+.|+..- .|--|++........-.. ...-| .-+|.| +.|+|+|||+.++.
T Consensus 258 ~l~~l~~~L~~~g~~~~D~~lvrgldYYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg-~~~pav-Gfaiglerl~~~l~ 335 (344)
T 1z7m_A 258 QLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAANQPILSGGRYDQLLSNFQ-EEAFAI-GFCCHMDTILKALE 335 (344)
T ss_dssp HHHHHHHHHTTTSCCEECTTCCCSSTTCCSEEEEEEETTEEEEEEEEEECHHHHHTSS-SCCCCE-EEEEEHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCCCccCCCeEEEEEECCCCCeEeeCccHHHHHHHhC-CCCCeE-EEEEEHHHHHHHHH
Confidence 444555566655555554321 145676654321110000 12233 458988 99999999998886
Q ss_pred Hhc
Q 042110 113 EHC 115 (287)
Q Consensus 113 E~~ 115 (287)
+++
T Consensus 336 ~~~ 338 (344)
T 1z7m_A 336 RQE 338 (344)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 117
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=24.33 E-value=34 Score=31.91 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.4
Q ss_pred eceEeecceehhHHHHHHHHhc
Q 042110 94 TPSVIEPSSGIDRIIYCLCEHC 115 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE~~ 115 (287)
+|.| +.|+|+|||+.+|.+++
T Consensus 347 ~pAv-GFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 347 APAV-GFAFEVERVMAVLEAQE 367 (373)
T ss_dssp CCCE-EEEEEHHHHHHHHHHHH
T ss_pred CCeE-EEEEEHHHHHHHHHhcc
Confidence 8988 99999999998887663
No 118
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.89 E-value=1.7e+02 Score=22.98 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=34.3
Q ss_pred CCceEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHhHHcCCCE
Q 042110 138 APIKCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDITGASIGKRYARTDELGVPC 194 (287)
Q Consensus 138 AP~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~s~~SIGKr~k~AdeiGiPy 194 (287)
.+++++++.+.. +.+.++.+.+.+.|+...+-..+.---.-.+.|.+.|+++
T Consensus 68 ~~vDlvii~vp~-----~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 68 KDVDVIVFVVPP-----KVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEY 119 (138)
T ss_dssp TTCCEEEECSCH-----HHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEE
T ss_pred CCCCEEEEEeCH-----HHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEE
Confidence 367888887753 4556667777778998777665433233344567789884
No 119
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=23.63 E-value=84 Score=28.66 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=32.2
Q ss_pred eeEEeecceeeEeeee--ecccCcEEeceEeecceehhHHHHHHHH
Q 042110 70 KNVCIKKNMLLISKEK--KKEFQRVFTPSVIEPSSGIDRIIYCLCE 113 (287)
Q Consensus 70 ~~~~i~~~~v~~~~~~--~~~~~~~~~P~VIe~S~GIeRii~aLlE 113 (287)
=.+++-=+-+.+.+-+ ..+.|-.-.|..+|..||+|||.+.|..
T Consensus 137 LGWEVWldGMEITQFTYFQQvGGi~c~pv~~EITYGLERiamylQ~ 182 (298)
T 1j5w_A 137 VGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQG 182 (298)
T ss_dssp EEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEEEEEHHHHHHHHHT
T ss_pred ccceeeEcceeeehhhhhhhcCCcccCccceeecccHHHHHHHHhC
Confidence 3455544444555555 5678888899999999999999888754
No 120
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=23.31 E-value=1.4e+02 Score=20.19 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.1
Q ss_pred CEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhc
Q 042110 193 PCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTD 231 (287)
Q Consensus 193 Py~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~ 231 (287)
|..|+|+.+|.+.+.. +......+++++|...|..+..
T Consensus 4 ~i~v~I~~dG~~~~~~-~~~~~~~v~~~~L~~~l~~~~~ 41 (74)
T 2jwk_A 4 PVILEVAGIGKYAISI-GGERQEGLTEEMVTQLSRQEFD 41 (74)
T ss_dssp CEEEEECSSSCEEEEE-TTEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEEecCccEEEec-CCCcCcccCHHHHHHHHHHHHh
Confidence 7889998899988853 1123367899999998887654
No 121
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=23.30 E-value=1.5e+02 Score=24.04 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred ceEE-EEEecCChhHHHHHHHHHHHHHHC-CCeEEEeCCCCCHHHHHHHhHH----------cCCCEEEEEcCCCcEEEE
Q 042110 140 IKCT-VFTLVQNQQYEEVAKVISESLSVA-GISHKIDITGASIGKRYARTDE----------LGVPCAITVDSTSSVTIR 207 (287)
Q Consensus 140 ~kV~-Ilpl~~~~e~~~~A~~Ia~~LR~~-Gi~v~vD~s~~SIGKr~k~Ade----------iGiPy~IiIG~~gtVTLR 207 (287)
+++. ++..++ .....+.++...-. .+.+..|. ++.+.++|.-... ...|..++|| +|+|.-+
T Consensus 79 v~vv~~iS~D~----~~~~~~f~~~~~~~~~fp~l~D~-~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~ 152 (173)
T 3mng_A 79 VQVVACLSVND----AFVTGEWGRAHKAEGKVRLLADP-TGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKAL 152 (173)
T ss_dssp CCEEEEEESSC----HHHHHHHHHHTTCTTTCEEEECT-TCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred CEEEEEEcCCC----HHHHHHHHHHhCCCCceEEEECC-ChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEE
Q ss_pred ECCCCCeeeEeHHHHHHHHHHH
Q 042110 208 ERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 208 drdt~~Q~~V~leel~~~l~~l 229 (287)
........+ +++++...|++|
T Consensus 153 ~v~~~~~g~-~~~~~~~vl~~l 173 (173)
T 3mng_A 153 NVEPDGTGL-TCSLAPNIISQL 173 (173)
T ss_dssp EECTTSSCS-STTSHHHHHHHC
T ss_pred EEeCCCCCc-chHHHHHHHHhC
No 122
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=23.27 E-value=1.5e+02 Score=21.80 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCeEEEeCC----CCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCC--CeeeEeHHHHHHHHHHH
Q 042110 159 VISESLSVAGISHKIDIT----GASIGKRYARTDELGVPCAITVDSTSSVTIRERDSK--DQMRVHVDDVASIVKAL 229 (287)
Q Consensus 159 ~Ia~~LR~~Gi~v~vD~s----~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~--~Q~~V~leel~~~l~~l 229 (287)
++++.+...=.-+.+|.. ...+.++|.-....|+|..+++|.+|.+.-+..... ....++.+++.+.|+++
T Consensus 55 ~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 55 KNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp HHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 566666442223346541 233444443221269999999988887655533211 11245667777777654
No 123
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=22.61 E-value=44 Score=27.16 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=38.9
Q ss_pred CCeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHh
Q 042110 168 GISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALT 230 (287)
Q Consensus 168 Gi~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~ 230 (287)
.+.+..|. +..+.++|.-... .++|..++||.+|.|.-+....... .-.++++.+.|+.+.
T Consensus 99 ~~p~l~D~-~~~~~~~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~-~~~~~e~l~~l~~l~ 162 (197)
T 1qmv_A 99 NIPLLADV-TRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPV-GRSVDEALRLVQAFQ 162 (197)
T ss_dssp SSCEEECT-TCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTB-CCCHHHHHHHHHHHH
T ss_pred ceEEEECC-cHHHHHHcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCC-CCCHHHHHHHHHhcc
Confidence 45565654 5667777653211 2689999999999887765443221 235788888887664
No 124
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=22.50 E-value=1.6e+02 Score=27.06 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHCCCeE--EEeCCC----CCHHHHHHHhHHcCCCEEEEEcC
Q 042110 152 QYEEVAKVISESLSVAGISH--KIDITG----ASIGKRYARTDELGVPCAITVDS 200 (287)
Q Consensus 152 e~~~~A~~Ia~~LR~~Gi~v--~vD~s~----~SIGKr~k~AdeiGiPy~IiIG~ 200 (287)
-....|.+|.+.|++.|+.| .+..++ .++..|.+.|++.++-+.|-|=.
T Consensus 38 i~L~iA~~l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~ 92 (326)
T 1xov_A 38 EAEKVLNAASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHL 92 (326)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEec
Confidence 34578899999999999994 423332 36899999999999999888854
No 125
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=22.08 E-value=48 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.3
Q ss_pred eceEeecceehhHHHHHHHH
Q 042110 94 TPSVIEPSSGIDRIIYCLCE 113 (287)
Q Consensus 94 ~P~VIe~S~GIeRii~aLlE 113 (287)
-||- +.++|+||+++.+..
T Consensus 392 PP~~-G~glGiDRLvmll~g 410 (429)
T 1wyd_A 392 PPHA-GFGMGLARLMVMLTG 410 (429)
T ss_dssp CCEE-EEEEEHHHHHHHHHC
T ss_pred CCce-EEEEcHHHHHHHHcC
Confidence 3666 999999999988764
No 126
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=21.95 E-value=1.4e+02 Score=25.02 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCeEEEe-----CCCCCHHHHHHHhHHcCCCEEEEE
Q 042110 155 EVAKVISESLSVAGISHKID-----ITGASIGKRYARTDELGVPCAITV 198 (287)
Q Consensus 155 ~~A~~Ia~~LR~~Gi~v~vD-----~s~~SIGKr~k~AdeiGiPy~IiI 198 (287)
..+.++.+.|++.|+.+..- .....+.+.++.|.++|++++++.
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~ 111 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCE 111 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEec
Confidence 45788999999999987532 234568999999999999999875
No 127
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.81 E-value=1.5e+02 Score=24.04 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred CCceEEEEEecCC--hhHHHHHHHHHHHHHHCCCeEE----EeCCCCCHHHHHHHhHH-cCCCEEEEEcC
Q 042110 138 APIKCTVFTLVQN--QQYEEVAKVISESLSVAGISHK----IDITGASIGKRYARTDE-LGVPCAITVDS 200 (287)
Q Consensus 138 AP~kV~Ilpl~~~--~e~~~~A~~Ia~~LR~~Gi~v~----vD~s~~SIGKr~k~Ade-iGiPy~IiIG~ 200 (287)
.+..|+|+..++. .....-+.-|++.|++.|+.+. +.|....|.+.++.+-. .++.++||-|.
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 3568999998762 1123456678999999998764 33334578999998865 37899999996
No 128
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=21.63 E-value=1.5e+02 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=26.8
Q ss_pred eEEEEEecCChhHHHHHHHHHHHHHHCCCeEEEeC
Q 042110 141 KCTVFTLVQNQQYEEVAKVISESLSVAGISHKIDI 175 (287)
Q Consensus 141 kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~vD~ 175 (287)
++.|+.-+..-.....|..|++.|++.|+.+++-+
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLN 37 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 46777766544567889999999999999887543
No 129
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=20.87 E-value=1.5e+02 Score=22.10 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=34.2
Q ss_pred EeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHHhcCC
Q 042110 173 IDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKALTDGQ 233 (287)
Q Consensus 173 vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l~~~~ 233 (287)
+.+.+..+.++|. -.++|..+++|.+|.+.-+ ..| ..+.+++.+.|.++....
T Consensus 93 ~~d~~~~~~~~~~---v~~~P~~~lid~~G~i~~~--~~g---~~~~~~l~~~l~~~~~~~ 145 (152)
T 2lja_A 93 HMGTDRTFMDAYL---INGIPRFILLDRDGKIISA--NMT---RPSDPKTAEKFNELLGLE 145 (152)
T ss_dssp ECSSCTHHHHHTT---CCSSCCEEEECTTSCEEES--SCC---CTTCHHHHHHHHHHHTCC
T ss_pred ecCcchhHHHHcC---cCCCCEEEEECCCCeEEEc--cCC---CCCHHHHHHHHHHHhccc
Confidence 3333455666553 4689999999988876553 333 235577878787776643
No 130
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=20.77 E-value=57 Score=28.47 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCCHHHHHHHhHH---cCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 167 AGISHKIDITGASIGKRYARTDE---LGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 167 ~Gi~v~vD~s~~SIGKr~k~Ade---iGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
..+.+..|. +..+.++|.-... ..+|..++||.+|.|.-+...... ..-.+++++..|+.+
T Consensus 155 ~~fp~l~D~-~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~-~~~~~~eil~~L~al 218 (254)
T 3tjj_A 155 IRIPLLSDL-THQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLP-VGRSVDETLRLVQAF 218 (254)
T ss_dssp CSSCEEECT-TSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTT-CCCCHHHHHHHHHHH
T ss_pred cccceeeCc-HHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCC-CCCCHHHHHHHHHhh
Confidence 456777776 5678877764321 236899999999998777654322 223577777777654
No 131
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=20.71 E-value=1.2e+02 Score=23.18 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=38.8
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHCCCeEE-EeCCC-CCHHHH-HHHhHHcCCCEEEEEcC
Q 042110 140 IKCTVFTLVQNQQYEEVAKVISESLSVAGISHK-IDITG-ASIGKR-YARTDELGVPCAITVDS 200 (287)
Q Consensus 140 ~kV~Ilpl~~~~e~~~~A~~Ia~~LR~~Gi~v~-vD~s~-~SIGKr-~k~AdeiGiPy~IiIG~ 200 (287)
-++.|+..+. ....|.+.++.|++.|+++. ++.+. ..+-.. +..+ -.+...++++.+
T Consensus 14 ~dv~iv~~Gs---~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~-~~~~~~vvvvE~ 73 (118)
T 3ju3_A 14 ADITFVTWGS---QKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNV-LSSANLVIDVES 73 (118)
T ss_dssp CSEEEEEEGG---GHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHH-HTTCSCCCCCCC
T ss_pred CCEEEEEECc---cHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHH-HcCCCEEEEEEC
Confidence 3688888885 56789999999999999886 44442 345433 4443 246666777765
No 132
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=20.15 E-value=1.5e+02 Score=21.92 Aligned_cols=59 Identities=8% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHHCC--CeEEEeCCCCCHHHHHHHhHHcCCCEEEEEcCCCcEEEEECCCCCeeeEeHHHHHHHHHHH
Q 042110 161 SESLSVAG--ISHKIDITGASIGKRYARTDELGVPCAITVDSTSSVTIRERDSKDQMRVHVDDVASIVKAL 229 (287)
Q Consensus 161 a~~LR~~G--i~v~vD~s~~SIGKr~k~AdeiGiPy~IiIG~~gtVTLRdrdt~~Q~~V~leel~~~l~~l 229 (287)
.+.+.+.| +.+.+|. ++.+.. .+...-.++|..++||.+|.+.-+ .++.+++.+.|+++
T Consensus 79 ~~~~~~~~~~~~~~~d~-~~~~~~-~~~~~v~~~P~~~lid~~G~i~~~--------~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 79 ATKAVYMPQGWIVGWNK-AGDIRT-RQLYDIRATPTIYLLDGRKRVILK--------DTSMEQLIDYLATQ 139 (142)
T ss_dssp HHHHTTSCTTCEEEECT-TCHHHH-TTCSCCCSSSEEEEECTTCBEEEC--------SCCHHHHHHHHHC-
T ss_pred HHHHHHcCCCcceeeCC-ccchhh-HHHcCCCCCCeEEEECCCCCEEec--------CCCHHHHHHHHHHH
Confidence 34444444 4555554 333422 113345689999999998887542 25677777777654
Done!