BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042112
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 61
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 50 EAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVCHDSI 99
+ VECAVCL+ +E+GEE R L C H FHA C+D W+ +++ CP+C ++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 48 RAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102
++E C VC+ E + +R L C+H FHA C+D W+ N CP+C PS
Sbjct: 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGPS 73
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106
+EC VC GE +R+L C+HLFH C+ W+ + CPVC S+ T
Sbjct: 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL-EQHDSCPVCRKSLTGQNTAT 69
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 46 GSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102
G+ + + C +C S +G+ EL CHH FH C+ W+ + CPVC P
Sbjct: 35 GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPPP 90
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTG 107
CAVCL + +E+ C H FH CL W+ +CP+C+ + L+G
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQLAQLSG 70
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 39 WEDRFELGSRA-EAVECAVCLSHIEEGEEIRELSCHHLF-----HAVCLDTWISN----- 87
W D +L E + C +C ++ +G E+ +SC + HAVCL+ W
Sbjct: 295 WSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK 354
Query: 88 -----NYAICPVCHDSIAPS 102
++ CP C ++ S
Sbjct: 355 TFLEVSFGQCPFCKAKLSTS 374
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 21 HFSFFGHRINASEQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVC 80
S + + E + + E S + C +CL ++ +E C H F A C
Sbjct: 4 ELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKE--CLHRFCADC 61
Query: 81 LDTWISNNYAICPVCHDSIAPSRWL 105
+ T + + CP C + R L
Sbjct: 62 IITALRSGNKECPTCRKKLVSKRSL 86
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWL 105
C +CL ++ +E C H F A C+ T + + CP C + R L
Sbjct: 56 CPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 105
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 49 AEAVECAVCLSH----IEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
+ V C +C+ ++ G I C H+F + CL + N CP C I R+
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKRY 66
>pdb|2WMF|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Its Native Form
Length = 581
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 81 LDTWISNNYAICPVCHDSIAPSRWLTGH 108
L WIS NY+I PV +D + L+GH
Sbjct: 511 LANWISKNYSINPVDNDFRTTTLTLSGH 538
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWL 105
C +CL ++ +E C H F A C+ T + + CP C + R L
Sbjct: 57 CPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 49 AEAVECAVCLSH----IEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
+ V C +C+ ++ G I C H+F + CL + N CP C I R+
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKRY 63
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 49 AEAVECAVCLSH----IEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
+ V C +C+ ++ G I C H+F + CL + N CP C I R+
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHKRY 128
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 36 VNIWEDRFEL----GSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAI 91
+ + +++FEL GS + C +C E ++++ C HL CL +W +
Sbjct: 317 IKVTQEQFELXCEMGSTFQL--CKIC---AENDKDVKIEPCGHLMCTSCLTSWQESEGQG 371
Query: 92 CPVC 95
CP C
Sbjct: 372 CPFC 375
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 52 VECAVCLSH----IEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
V C +C+ ++ G I C H+F + CL + N CP C I R+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHKRY 59
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
EC +C+ +G L C H F C+D W S+ + CP+C
Sbjct: 17 ECCICM----DGRADLILPCAHSFCQKCIDKW-SDRHRNCPIC 54
>pdb|2WMH|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
In Complex With The H-Disaccharide Blood Group Antigen
Length = 581
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 81 LDTWISNNYAICPVCHDSIAPSRWLTGH 108
L WIS NY+I PV +D + L GH
Sbjct: 511 LANWISKNYSINPVDNDFRTTTLTLKGH 538
>pdb|2WMG|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Complex With The Lewisy Pentasaccharide
Blood Group Antigen
Length = 581
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 81 LDTWISNNYAICPVCHDSIAPSRWLTGH 108
L WIS NY+I PV +D + L GH
Sbjct: 511 LANWISKNYSINPVDNDFRTTTLTLKGH 538
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 70 LSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
L+C H F + C++ W+ CP+C I +
Sbjct: 69 LNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKTY 102
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 70 LSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
L+C H F + C++ W+ CP+C I +
Sbjct: 69 LNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKTY 102
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 44 ELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
E+GS + C +C E ++++ C HL CL W ++ CP C
Sbjct: 333 EMGSTFQL--CKIC---AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 49 AEAVECAVCLSH----IEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+ V C +C+ ++ G I C H+F + CL + N CP C I
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKI 66
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 44 ELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
E+GS + C +C E ++++ C HL CL +W + CP C
Sbjct: 327 EMGSTFQL--CKIC---AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 44 ELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
E+GS + C +C E ++++ C HL CL +W + CP C
Sbjct: 329 EMGSTFQL--CKIC---AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 44 ELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
E+GS + C +C E ++++ C HL CL +W + CP C
Sbjct: 327 EMGSTFQL--CKIC---AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 70 LSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
L+C H F + C++ W+ CP+C I +
Sbjct: 80 LNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKTY 113
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 72 CHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103
C+H FH C+ W+ N CP+C R
Sbjct: 48 CNHSFHNCCMSLWVKQNNR-CPLCQQDWVVQR 78
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
A C +CL + L C H F VC+ WI N CP+C +
Sbjct: 5 AERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPV 50
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 36 VNIWEDRFELGSRAEAV--ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICP 93
+ + +++FEL + C +C E ++++ C HL CL +W + CP
Sbjct: 10 IKVTQEQFELXCEMGSTFQLCKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP 66
Query: 94 VC 95
C
Sbjct: 67 FC 68
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 54 CAVCLSHIEEGEEIRE-LSCHHLFHAVCLDTWISNNYAICPVC 95
C +CL I + L C HL H C + + Y CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLC 49
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 54 CAVCLSHIEEGEEIRE-LSCHHLFHAVCLDTWISNNYAICPVCHDS 98
C +CL I + L C HL H C + + Y CP+C S
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCMHS 52
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 36 VNIWEDRFELGSRAEAV--ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICP 93
+ + ++++EL + C +C E ++++ C HL CL W ++ CP
Sbjct: 9 IKVTQEQYELXCEMGSTFQLCKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCP 65
Query: 94 VC 95
C
Sbjct: 66 FC 67
>pdb|3TK8|A Chain A, Structure Of A
2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N-
Succinyltransferase From Burkholderia Pseudomallei
pdb|3TK8|B Chain B, Structure Of A
2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N-
Succinyltransferase From Burkholderia Pseudomallei
pdb|3TK8|C Chain C, Structure Of A
2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N-
Succinyltransferase From Burkholderia Pseudomallei
Length = 316
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 10 RCLKWACNLLLHFSFFGH-RINASEQLV----NIWEDRFELGSRAEAVECAVCLSHIEE 63
R L N +H S N S+QL N WE+R EL +A + E ++H E
Sbjct: 20 RPLNARRNAPIHSSSTSSIATNMSQQLQQIIDNAWENRAELSPKAASAEIREAVAHAIE 78
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 36 VNIWEDRFEL----GSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAI 91
+ + ++++EL GS + C +C E ++++ C HL CL +W +
Sbjct: 7 IKVTQEQYELYCEMGSTFQL--CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQG 61
Query: 92 CPVC 95
CP C
Sbjct: 62 CPFC 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.141 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,321,514
Number of Sequences: 62578
Number of extensions: 154459
Number of successful extensions: 464
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 66
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)