BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042112
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 901 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 946
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 933 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 978
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 936 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 981
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 941 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 986
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 914 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 959
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 906 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 951
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
+C +CLS +EEGE++R L C HLFH VC+D W+ N CP+C I
Sbjct: 870 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDI 915
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
+QL + +F+ G + CA+CL E+G+++R L C H +H C+D W++ C
Sbjct: 221 DQLKKLPVHKFKKGDEYDV--CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 278
Query: 93 PVCHDSIAPSR 103
PVC + PS+
Sbjct: 279 PVCKQKVVPSQ 289
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 44 ELGSRAEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102
EL A + ECAVCL IE G+ R + C+H FH +C DTW+S N+ +CPVC +AP+
Sbjct: 94 ELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLS-NHTVCPVCRAELAPN 152
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
+QL + +F+ G + CA+CL E+G+++R L C H +H C+D W++ C
Sbjct: 221 DQLKKLPVHKFKKGDEYDV--CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 278
Query: 93 PVCHDSIAPSR 103
PVC + PS+
Sbjct: 279 PVCKQKVVPSQ 289
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
+QL + +F+ G + CA+CL E+G+++R L C H +H C+D W++ C
Sbjct: 221 DQLKKLPVHKFKKGDEYDV--CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 278
Query: 93 PVCHDSIAPSR 103
PVC + PS+
Sbjct: 279 PVCKQKVVPSQ 289
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
+QL + +F+ G + CA+CL E+G+++R L C H +H C+D W++ C
Sbjct: 221 DQLKKLPVHKFKKGDEYDV--CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 278
Query: 93 PVCHDSIAPSR 103
PVC + PS+
Sbjct: 279 PVCKQKVVPSQ 289
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
+QL + +F+ G + CA+CL E+G+++R L C H +H C+D W++ C
Sbjct: 221 DQLKKLPVHKFKKGDEYDV--CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 278
Query: 93 PVCHDSIAPSR 103
PVC + PS+
Sbjct: 279 PVCKQKVVPSQ 289
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
+QL + +F+ G + CA+CL E+G+++R L C H +H C+D W++ C
Sbjct: 221 DQLKKLPVHKFKKGDEYDV--CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 278
Query: 93 PVCHDSIAPSR 103
PVC + PS+
Sbjct: 279 PVCKQKVVPSQ 289
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 47 SRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106
S A +C VCLS ++ GEE+R+L C H+FH CL+ W+ + CP+C + P
Sbjct: 67 SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLPHHH-Q 125
Query: 107 GHGEEVLVLKFRCFNSRT 124
GHG + + F ++ T
Sbjct: 126 GHGSDASISAFPLRSTST 143
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 46 GSRAEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104
G A A ECAVCLS ++E ++ REL +C H+FH C+DTW++ + CPVC + P
Sbjct: 100 GVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLT-TCSTCPVCRTEVEPRPR 158
Query: 105 LTGHGEEVLV 114
L E V
Sbjct: 159 LEPEPREGPV 168
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 32 SEQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAI 91
EQL I ++ G + + CA+CL E+G+++R L C H +H+ C+D W++
Sbjct: 210 KEQLKQIPTHDYQKGDQYDV--CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKT 267
Query: 92 CPVCHDSI 99
CP+C +
Sbjct: 268 CPICKQPV 275
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 32 SEQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAI 91
EQL I ++ G + CA+CL E+G+++R L C H +H+ C+D W++
Sbjct: 210 KEQLKQIPTHDYQKGDEYDV--CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKT 267
Query: 92 CPVCHDSI 99
CP+C +
Sbjct: 268 CPICKQPV 275
>sp|Q1MTR5|YG66_SCHPO Uncharacterized RING finger membrane protein C15C4.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.06c PE=4 SV=1
Length = 556
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 53 ECAVCL-SHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
EC +CL + EE REL CHH+FH C+D ++ N +CP+C S+
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSV 544
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 32 SEQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAI 91
EQL I ++ G + CA+CL E+G+++R L C H +H+ C+D W++
Sbjct: 210 KEQLKQIPTHDYQKGDEYDV--CAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKT 267
Query: 92 CPVCHDSI 99
CP+C +
Sbjct: 268 CPICKQPV 275
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
EQ+ N+ F G C+VC++ EG ++R+L C H +H C+D W+S N + C
Sbjct: 527 EQIDNLAMRSF--GENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSEN-STC 583
Query: 93 PVCHDSIAPS 102
P+C ++ S
Sbjct: 584 PICRRAVLSS 593
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
EQ+ N+ F G C+VC++ EG ++R+L C H +H C+D W+S N + C
Sbjct: 551 EQIDNLAMRSF--GENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSEN-STC 607
Query: 93 PVCHDSIAPS 102
P+C ++ S
Sbjct: 608 PICRRAVLAS 617
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
EQ+ N+ F G C+VC++ EG ++R+L C H +H C+D W+S N + C
Sbjct: 566 EQIDNLSTRNF--GENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSEN-STC 622
Query: 93 PVCHDSI 99
P+C ++
Sbjct: 623 PICRRAV 629
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAIC 92
EQ+ N+ F G C+VC++ EG ++R+L C H +H C+D W+S N + C
Sbjct: 549 EQIDNLSTRNF--GENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSEN-STC 605
Query: 93 PVCHDSI 99
P+C ++
Sbjct: 606 PICRRAV 612
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 50 EAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIA 100
E +C VCL+ EE E +R L C+H FH C+DTW+S ++ CP+C IA
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLS-SHTNCPLCRAGIA 223
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTGHGEEV 112
+C VCLS ++EGEE+R+L C H+FH CL+ W+ CP+C ++ ++ V
Sbjct: 85 DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSV 144
Query: 113 LVLKFRCFN 121
CF+
Sbjct: 145 GRDLISCFS 153
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
C+VC++ EG ++R+L C H +H C+D W+S N + CP+C ++
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSEN-STCPICRRAV 747
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
+C +CLS +E+GE++R L C HLFH +C+D W++ + CP+C
Sbjct: 293 KCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKK-CPIC 334
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 47 SRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC----------H 96
S + A CA+CL EG+E+R +SC H FH C+D W+ + + CP+C
Sbjct: 265 SCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWL-HQHRTCPLCMFNITEGDSFS 323
Query: 97 DSIAPSR 103
S+ PSR
Sbjct: 324 QSLGPSR 330
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
+C +CLS +E+GE++R L C HLFH +C+D W++ + CP+C
Sbjct: 294 KCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKK-CPIC 335
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 51 AVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVCHDSIAP 101
VECA+CL+ E+ E +R + C H FHA C+D W+S+ + CPVC S+ P
Sbjct: 125 GVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSR-STCPVCRASLPP 175
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 50 EAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101
EA+EC+VCL+ E+ E +R + C H+FH C+D W+ ++ CP+C + P
Sbjct: 140 EALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL-RSHTTCPLCRADLIP 191
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 47 SRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106
S + +CA+CL +GEE+R + C H FH C+D W+ N+ CP C +I +
Sbjct: 195 SSSSISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHT-CPHCRHNIIEQK-KG 252
Query: 107 GHG 109
GHG
Sbjct: 253 GHG 255
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 51 AVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102
ECAVCLS +EE + R L +C H+FH C+DTW++ + CPVC PS
Sbjct: 97 GTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQ-STCPVCRTEAEPS 148
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN-YAICPVCHDSIA 100
CA+CL EEG++++ L C H +H C+D W S CPVC S+A
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVA 356
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTGHG 109
CA+CL +GEE+R + C H FH C+D W+ N+ CP C +I + GHG
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHT-CPHCRHNIIEQK-KGGHG 319
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN-YAICPVCHDSIAPS 102
CA+CL EEG++++ L C H +H C+D W S CPVC S+A +
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAAT 358
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
CA+CL EG+E+R +SC H FH C+D W+ + CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLY-QHRTCPLC 312
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWL 105
E EC +CLS E+G E+REL C H FH C+D W+ N A CP+C +I S L
Sbjct: 349 EDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYIN-ATCPLCKYNILKSSNL 403
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 42 RFEL-GSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
RF L ++E C VC S E + +R L C+H FHA C+D W+ N CP+C
Sbjct: 383 RFNLENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRT-CPIC 436
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 42 RFELGSRAEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVC 95
R+ ++ +C +CLS EEGE ++ + C H+FH C+DTW+S +Y CP+C
Sbjct: 128 RYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLS-SYVTCPLC 181
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 44 ELGSRAEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102
++GS+ +ECA+CL+ +E+ E +R L C+HLFH C+DTW+ ++A CPVC ++
Sbjct: 116 KIGSKD--LECAICLNELEDHETVRLLPICNHLFHIDCIDTWLY-SHATCPVCRSNLTAK 172
Query: 103 RWLTGHGEEVLVL 115
G ++ + L
Sbjct: 173 SNKPGDEDDGVPL 185
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 52 VECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTGHGE 110
+ECA+CL+ E+ E +R L C H+FH C+D W+ + CPVC ++A GE
Sbjct: 126 LECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLE-AHVTCPVCRANLAEQ---VAEGE 181
Query: 111 EV 112
V
Sbjct: 182 SV 183
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102
C+VC+S G ++R+L C H FH C+D W+S N CP+C + S
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSEN-CTCPICRQPVLGS 679
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 54 CAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
C+VC+S G ++R+L C H FH C+D W+S N CPVC
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSEN-CTCPVC 654
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 51 AVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVC 95
VECAVCL+ +E+GEE R L C H FHA C+D W+ +++ CP+C
Sbjct: 131 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-GSHSTCPLC 175
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 50 EAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVCHDSI---APSRWL 105
+A EC +CL E+GE++R L C+H FH C+DTW+ + + CP C S+ PS
Sbjct: 110 KATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSS-CPTCRQSLLLEQPSPMA 168
Query: 106 TGHGEEVLVLKF 117
+E +V+
Sbjct: 169 VSRRDEDMVVSI 180
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95
A++C VCL EEGE +R+L C HLFH+ C+ W+ + CP+C
Sbjct: 76 ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNS-CPLC 119
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 54 CAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVC 95
C VCLS+ E +E R L C+H FH C+D W++++ CP+C
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLC 567
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 47 SRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSI 99
S +CA+CL +GEE+R + C H FH C+D W+ ++ CP C +I
Sbjct: 283 SSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHT-CPHCRHNI 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.141 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,726,223
Number of Sequences: 539616
Number of extensions: 1873398
Number of successful extensions: 5349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 296
Number of HSP's that attempted gapping in prelim test: 5006
Number of HSP's gapped (non-prelim): 533
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)