Query 042112
Match_columns 132
No_of_seqs 172 out of 1282
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.7 1.4E-17 4.9E-22 101.4 5.8 68 33-102 6-73 (75)
2 2l0b_A E3 ubiquitin-protein li 99.7 1.9E-17 6.6E-22 104.6 5.5 68 33-101 22-89 (91)
3 2kiz_A E3 ubiquitin-protein li 99.6 3.4E-16 1.2E-20 93.7 6.4 54 49-103 12-65 (69)
4 2ect_A Ring finger protein 126 99.6 3.4E-16 1.2E-20 95.8 5.9 59 49-108 13-71 (78)
5 2ep4_A Ring finger protein 24; 99.6 4.6E-16 1.6E-20 94.3 6.3 55 49-104 13-67 (74)
6 1iym_A EL5; ring-H2 finger, ub 99.6 1.5E-16 5.3E-21 91.1 3.7 51 49-100 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.6 1.3E-15 4.6E-20 99.5 5.4 62 50-111 24-104 (114)
8 2ecl_A Ring-box protein 2; RNF 99.6 1E-15 3.5E-20 94.7 3.1 52 50-102 14-77 (81)
9 2ecm_A Ring finger and CHY zin 99.5 4.4E-15 1.5E-19 84.9 4.5 51 49-100 3-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.5 4.9E-15 1.7E-19 88.8 4.5 56 49-105 8-67 (71)
11 2d8s_A Cellular modulator of i 99.5 1.7E-14 5.7E-19 89.1 6.0 62 45-107 9-76 (80)
12 2djb_A Polycomb group ring fin 99.5 3.7E-14 1.3E-18 85.5 6.7 56 49-108 13-69 (72)
13 2ea6_A Ring finger protein 4; 99.5 2E-14 6.8E-19 85.5 5.3 52 49-101 13-68 (69)
14 3dpl_R Ring-box protein 1; ubi 99.5 1.9E-14 6.7E-19 93.3 4.8 51 50-101 36-101 (106)
15 2ecy_A TNF receptor-associated 99.5 3.1E-14 1.1E-18 84.4 5.2 52 49-103 13-64 (66)
16 2xeu_A Ring finger protein 4; 99.5 1.5E-14 5E-19 84.9 3.7 53 50-103 2-58 (64)
17 2ysl_A Tripartite motif-contai 99.5 5.7E-14 2E-18 84.6 6.2 52 49-103 18-71 (73)
18 2d8t_A Dactylidin, ring finger 99.5 1.1E-14 3.9E-19 87.6 2.6 52 49-104 13-64 (71)
19 2ct2_A Tripartite motif protei 99.5 8.1E-14 2.8E-18 86.7 6.4 54 49-102 13-69 (88)
20 1t1h_A Gspef-atpub14, armadill 99.4 9E-14 3.1E-18 84.9 5.1 55 49-106 6-60 (78)
21 1g25_A CDK-activating kinase a 99.4 7.9E-14 2.7E-18 82.4 4.6 55 50-104 2-58 (65)
22 1chc_A Equine herpes virus-1 r 99.4 6.7E-14 2.3E-18 83.3 4.2 50 49-101 3-52 (68)
23 2yur_A Retinoblastoma-binding 99.4 1.7E-13 5.7E-18 83.1 5.8 52 49-103 13-66 (74)
24 2ecn_A Ring finger protein 141 99.4 4.4E-14 1.5E-18 84.6 2.3 50 49-103 13-62 (70)
25 3lrq_A E3 ubiquitin-protein li 99.4 6.4E-14 2.2E-18 89.7 3.0 56 49-107 20-76 (100)
26 2egp_A Tripartite motif-contai 99.4 4.6E-14 1.6E-18 86.2 2.0 56 49-107 10-71 (79)
27 2csy_A Zinc finger protein 183 99.4 2.5E-13 8.6E-18 83.5 5.3 48 49-100 13-60 (81)
28 4ayc_A E3 ubiquitin-protein li 99.4 1.1E-13 3.7E-18 93.4 3.6 48 50-101 52-99 (138)
29 2ecw_A Tripartite motif-contai 99.4 2.7E-13 9.2E-18 83.6 4.9 55 49-106 17-76 (85)
30 2ecv_A Tripartite motif-contai 99.4 3.4E-13 1.2E-17 83.1 4.9 56 49-107 17-77 (85)
31 3fl2_A E3 ubiquitin-protein li 99.4 4.1E-13 1.4E-17 88.9 5.1 49 50-101 51-99 (124)
32 4a0k_B E3 ubiquitin-protein li 99.4 5.1E-14 1.7E-18 92.7 0.4 52 50-102 47-113 (117)
33 2ysj_A Tripartite motif-contai 99.4 7.9E-13 2.7E-17 77.5 5.0 44 49-95 18-63 (63)
34 4ap4_A E3 ubiquitin ligase RNF 99.4 4.4E-13 1.5E-17 89.0 3.9 55 49-104 5-63 (133)
35 3ztg_A E3 ubiquitin-protein li 99.3 1.7E-12 5.9E-17 81.5 6.2 49 49-100 11-61 (92)
36 2ct0_A Non-SMC element 1 homol 99.3 1.2E-12 4.1E-17 79.5 5.0 53 49-103 13-66 (74)
37 2ecj_A Tripartite motif-contai 99.3 1E-12 3.4E-17 75.6 4.3 44 49-95 13-58 (58)
38 2y43_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 84.6 3.2 50 50-103 21-71 (99)
39 3hct_A TNF receptor-associated 99.3 1E-12 3.5E-17 86.3 4.0 53 49-104 16-68 (118)
40 1jm7_A BRCA1, breast cancer ty 99.3 2.2E-12 7.4E-17 83.6 4.7 55 50-107 20-76 (112)
41 1z6u_A NP95-like ring finger p 99.3 2.2E-12 7.4E-17 88.3 4.9 50 50-102 77-126 (150)
42 1e4u_A Transcriptional repress 99.3 4.6E-12 1.6E-16 77.7 5.8 55 49-104 9-65 (78)
43 2ckl_A Polycomb group ring fin 99.3 2.7E-12 9.3E-17 83.0 4.9 50 49-102 13-63 (108)
44 1rmd_A RAG1; V(D)J recombinati 99.3 1.7E-12 5.9E-17 84.9 3.9 54 50-106 22-75 (116)
45 3l11_A E3 ubiquitin-protein li 99.3 4.9E-13 1.7E-17 87.4 0.9 49 49-100 13-61 (115)
46 2ckl_B Ubiquitin ligase protei 99.3 2.1E-12 7E-17 89.4 4.1 50 49-101 52-102 (165)
47 3knv_A TNF receptor-associated 99.3 1.5E-13 5E-18 93.3 -1.7 51 49-102 29-79 (141)
48 4ap4_A E3 ubiquitin ligase RNF 99.2 5.6E-12 1.9E-16 83.5 4.1 54 49-103 70-127 (133)
49 1bor_A Transcription factor PM 99.2 6.3E-12 2.1E-16 72.2 2.0 48 49-103 4-51 (56)
50 2vje_A E3 ubiquitin-protein li 99.2 1.8E-11 6.2E-16 72.2 4.0 48 49-100 6-56 (64)
51 2y1n_A E3 ubiquitin-protein li 99.1 2.9E-11 1E-15 93.8 5.0 49 51-102 332-380 (389)
52 2kre_A Ubiquitin conjugation f 99.1 5.1E-11 1.8E-15 76.3 4.8 54 49-106 27-80 (100)
53 3hcs_A TNF receptor-associated 99.1 3.2E-11 1.1E-15 83.7 3.9 53 49-104 16-68 (170)
54 2kr4_A Ubiquitin conjugation f 99.1 5.1E-11 1.7E-15 74.1 4.4 52 49-104 12-63 (85)
55 1wgm_A Ubiquitin conjugation f 99.1 9.8E-11 3.4E-15 74.7 5.1 54 49-106 20-74 (98)
56 2vje_B MDM4 protein; proto-onc 99.1 6.2E-11 2.1E-15 69.7 3.4 48 49-100 5-55 (63)
57 1jm7_B BARD1, BRCA1-associated 99.1 1.8E-11 6.3E-16 80.2 1.2 50 50-105 21-71 (117)
58 4ic3_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 72.9 2.1 44 49-100 22-66 (74)
59 2c2l_A CHIP, carboxy terminus 99.0 1.3E-10 4.3E-15 85.7 4.4 55 49-106 206-260 (281)
60 2yu4_A E3 SUMO-protein ligase 99.0 2.8E-10 9.6E-15 71.9 3.6 54 49-105 5-67 (94)
61 2f42_A STIP1 homology and U-bo 98.9 5.4E-10 1.9E-14 78.4 3.8 55 49-106 104-158 (179)
62 2ea5_A Cell growth regulator w 98.9 1.1E-09 3.6E-14 65.3 4.2 45 49-101 13-58 (68)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.2E-09 3.9E-14 63.7 4.2 50 49-101 4-59 (60)
64 2ecg_A Baculoviral IAP repeat- 98.9 4.9E-10 1.7E-14 67.8 2.5 44 50-101 24-68 (75)
65 3k1l_B Fancl; UBC, ring, RWD, 98.9 2.2E-10 7.6E-15 87.3 0.2 54 49-102 306-374 (381)
66 1wim_A KIAA0161 protein; ring 98.8 1.3E-09 4.6E-14 68.6 2.6 50 49-98 3-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.8 8.2E-10 2.8E-14 67.7 1.5 44 50-101 17-61 (79)
68 3t6p_A Baculoviral IAP repeat- 98.6 6E-09 2.1E-13 79.9 1.2 43 50-100 294-337 (345)
69 3htk_C E3 SUMO-protein ligase 98.6 1.3E-08 4.4E-13 75.1 2.1 55 49-106 179-237 (267)
70 3vk6_A E3 ubiquitin-protein li 98.5 1E-07 3.5E-12 60.3 4.3 46 53-100 3-48 (101)
71 2bay_A PRE-mRNA splicing facto 98.5 6.5E-08 2.2E-12 56.3 2.3 51 52-106 4-55 (61)
72 3nw0_A Non-structural maintena 98.3 6E-07 2E-11 65.5 4.0 53 50-104 179-232 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.00074 2.5E-08 42.0 1.3 47 50-102 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0077 2.6E-07 37.5 2.6 35 50-84 2-36 (101)
75 2lri_C Autoimmune regulator; Z 94.7 0.036 1.2E-06 32.2 3.6 48 49-99 10-60 (66)
76 1weo_A Cellulose synthase, cat 90.4 1.1 3.9E-05 27.4 6.0 51 50-100 15-69 (93)
77 1wil_A KIAA1045 protein; ring 89.2 0.3 1E-05 29.7 2.8 35 49-84 13-47 (89)
78 2yt5_A Metal-response element- 89.0 0.21 7.3E-06 28.5 2.0 51 49-99 4-62 (66)
79 1f62_A Transcription factor WS 88.7 0.22 7.6E-06 26.9 1.8 45 53-97 2-49 (51)
80 2k16_A Transcription initiatio 87.9 0.1 3.6E-06 30.6 0.1 50 49-99 16-69 (75)
81 2l43_A N-teminal domain from h 87.3 0.67 2.3E-05 28.2 3.5 51 49-99 23-76 (88)
82 2l5u_A Chromodomain-helicase-D 87.0 0.3 1E-05 27.6 1.7 46 49-97 9-57 (61)
83 2ysm_A Myeloid/lymphoid or mix 86.9 0.2 6.9E-06 31.6 1.0 48 49-96 5-55 (111)
84 1wep_A PHF8; structural genomi 85.9 3.7 0.00013 24.1 6.6 50 50-100 11-65 (79)
85 1we9_A PHD finger family prote 85.6 0.47 1.6E-05 26.8 2.1 50 49-98 4-58 (64)
86 1fp0_A KAP-1 corepressor; PHD 85.5 0.55 1.9E-05 28.7 2.5 49 49-100 23-74 (88)
87 3v43_A Histone acetyltransfera 85.3 1.2 4.2E-05 28.1 4.2 47 50-96 4-62 (112)
88 1mm2_A MI2-beta; PHD, zinc fin 84.0 0.27 9.3E-06 27.8 0.5 48 49-99 7-57 (61)
89 3lqh_A Histone-lysine N-methyl 83.7 0.37 1.3E-05 33.5 1.2 50 51-100 2-65 (183)
90 3o36_A Transcription intermedi 83.6 0.22 7.4E-06 34.3 -0.0 47 50-99 3-52 (184)
91 2vpb_A Hpygo1, pygopus homolog 83.1 1.1 3.7E-05 25.7 2.9 34 49-82 6-41 (65)
92 2dar_A PDZ and LIM domain prot 82.0 1.4 4.9E-05 26.3 3.3 42 49-102 23-64 (90)
93 2ku3_A Bromodomain-containing 81.4 1.9 6.4E-05 25.1 3.5 48 49-96 14-64 (71)
94 3m62_A Ubiquitin conjugation f 81.1 1.6 5.6E-05 37.5 4.4 57 47-107 887-944 (968)
95 2lbm_A Transcriptional regulat 79.9 2.7 9.2E-05 27.9 4.3 46 49-97 61-116 (142)
96 1iml_A CRIP, cysteine rich int 78.6 0.86 2.9E-05 26.3 1.4 10 91-100 29-38 (76)
97 2cu8_A Cysteine-rich protein 2 77.8 1.8 6E-05 24.9 2.7 42 50-102 8-49 (76)
98 2kgg_A Histone demethylase jar 77.4 2.3 7.8E-05 22.9 2.9 44 53-96 4-52 (52)
99 2lv9_A Histone-lysine N-methyl 76.7 0.69 2.4E-05 28.7 0.6 47 50-97 27-75 (98)
100 1x64_A Alpha-actinin-2 associa 75.1 4.7 0.00016 23.8 4.2 42 49-102 23-64 (89)
101 2e6s_A E3 ubiquitin-protein li 74.8 0.59 2E-05 27.8 -0.1 46 52-97 27-76 (77)
102 3u5n_A E3 ubiquitin-protein li 74.6 0.56 1.9E-05 32.9 -0.2 48 49-99 5-55 (207)
103 1wev_A Riken cDNA 1110020M19; 74.1 0.89 3E-05 27.6 0.6 50 50-99 15-73 (88)
104 1wyh_A SLIM 2, skeletal muscle 74.0 3.6 0.00012 23.1 3.3 42 51-102 5-46 (72)
105 1x4l_A Skeletal muscle LIM-pro 73.5 3.8 0.00013 23.1 3.3 43 50-102 4-48 (72)
106 3ql9_A Transcriptional regulat 73.2 5.3 0.00018 26.0 4.2 45 49-97 55-110 (129)
107 1x61_A Thyroid receptor intera 72.7 3.8 0.00013 23.0 3.2 41 50-100 4-44 (72)
108 2ri7_A Nucleosome-remodeling f 72.1 0.79 2.7E-05 31.0 0.1 48 49-97 6-58 (174)
109 1x4k_A Skeletal muscle LIM-pro 71.8 3.9 0.00013 22.9 3.1 42 51-102 5-46 (72)
110 1x63_A Skeletal muscle LIM-pro 71.7 4.9 0.00017 23.2 3.6 42 51-102 15-56 (82)
111 2dj7_A Actin-binding LIM prote 70.1 2.8 9.5E-05 24.5 2.2 40 50-100 14-53 (80)
112 1g47_A Pinch protein; LIM doma 69.9 5 0.00017 22.8 3.3 43 50-102 10-52 (77)
113 2yql_A PHD finger protein 21A; 69.3 1.6 5.5E-05 23.9 0.9 46 48-96 6-54 (56)
114 2zet_C Melanophilin; complex, 68.8 2.3 7.7E-05 28.6 1.7 33 49-81 66-100 (153)
115 2d8z_A Four and A half LIM dom 68.8 4.9 0.00017 22.4 3.0 40 51-102 5-44 (70)
116 3asl_A E3 ubiquitin-protein li 68.3 0.81 2.8E-05 26.6 -0.5 43 53-97 20-68 (70)
117 3ask_A E3 ubiquitin-protein li 68.3 0.88 3E-05 32.6 -0.4 45 53-97 176-224 (226)
118 1z60_A TFIIH basal transcripti 68.0 2.3 7.8E-05 23.9 1.4 43 52-95 16-58 (59)
119 2ro1_A Transcription intermedi 67.6 0.88 3E-05 31.5 -0.5 45 51-98 2-49 (189)
120 2co8_A NEDD9 interacting prote 67.6 6 0.00021 23.0 3.3 43 50-103 14-56 (82)
121 1zbd_B Rabphilin-3A; G protein 67.4 2.7 9.3E-05 27.5 1.9 34 49-82 53-88 (134)
122 2d8y_A Eplin protein; LIM doma 67.0 8.4 0.00029 22.7 4.0 42 50-102 14-55 (91)
123 2cor_A Pinch protein; LIM doma 65.8 5.5 0.00019 23.0 2.9 42 49-102 13-54 (79)
124 3mjh_B Early endosome antigen 64.4 1.9 6.5E-05 21.5 0.5 14 50-63 4-17 (34)
125 2kwj_A Zinc finger protein DPF 63.8 1.6 5.5E-05 27.6 0.2 45 52-96 2-59 (114)
126 1nyp_A Pinch protein; LIM doma 63.2 5.2 0.00018 22.0 2.3 39 51-101 5-43 (66)
127 1wfk_A Zinc finger, FYVE domai 63.1 5.9 0.0002 23.9 2.7 35 49-83 7-42 (88)
128 1x62_A C-terminal LIM domain p 62.8 5.6 0.00019 22.9 2.5 40 49-100 13-52 (79)
129 1x68_A FHL5 protein; four-and- 62.6 5.6 0.00019 22.7 2.5 40 51-100 5-46 (76)
130 1vfy_A Phosphatidylinositol-3- 62.3 4.4 0.00015 23.4 1.9 32 51-82 11-43 (73)
131 1z2q_A LM5-1; membrane protein 62.0 4.9 0.00017 23.9 2.2 35 49-83 19-54 (84)
132 1xwh_A Autoimmune regulator; P 61.6 2.8 9.5E-05 23.8 1.0 46 49-97 6-54 (66)
133 2puy_A PHD finger protein 21A; 61.2 3.3 0.00011 22.9 1.2 45 50-97 4-51 (60)
134 1wd2_A Ariadne-1 protein homol 61.1 3.3 0.00011 23.2 1.2 20 84-103 1-20 (60)
135 3i2d_A E3 SUMO-protein ligase 61.0 8.2 0.00028 29.6 3.7 50 51-102 249-301 (371)
136 3t7l_A Zinc finger FYVE domain 60.8 4.8 0.00016 24.3 2.0 35 50-84 19-54 (90)
137 3f6q_B LIM and senescent cell 60.3 8.5 0.00029 21.2 3.0 43 50-102 10-52 (72)
138 2yw8_A RUN and FYVE domain-con 59.9 4.8 0.00016 23.8 1.9 34 50-83 18-52 (82)
139 4fo9_A E3 SUMO-protein ligase 59.6 9.4 0.00032 29.2 3.8 50 51-102 215-267 (360)
140 3shb_A E3 ubiquitin-protein li 59.3 1.1 3.6E-05 26.7 -1.2 43 53-97 28-76 (77)
141 2d8x_A Protein pinch; LIM doma 59.0 4.9 0.00017 22.4 1.8 41 50-102 4-44 (70)
142 1joc_A EEA1, early endosomal a 58.9 5.1 0.00018 25.7 2.0 34 50-83 68-102 (125)
143 2xb1_A Pygopus homolog 2, B-ce 58.6 5.3 0.00018 24.9 2.0 49 51-99 3-62 (105)
144 2a20_A Regulating synaptic mem 58.2 6.4 0.00022 22.1 2.0 34 47-80 5-39 (62)
145 2cur_A Skeletal muscle LIM-pro 57.8 3.9 0.00013 22.8 1.1 39 51-101 5-43 (69)
146 1wen_A Inhibitor of growth fam 57.7 7.8 0.00027 22.3 2.5 45 50-99 15-66 (71)
147 1weu_A Inhibitor of growth fam 56.6 7.4 0.00025 23.7 2.3 46 50-99 35-86 (91)
148 2o35_A Hypothetical protein DU 55.3 5.3 0.00018 24.9 1.5 12 75-86 42-53 (105)
149 1zfo_A LAsp-1; LIM domain, zin 55.2 2.7 9.1E-05 20.2 0.1 27 52-80 4-30 (31)
150 3fyb_A Protein of unknown func 55.1 5.3 0.00018 24.8 1.5 12 75-86 41-52 (104)
151 1x4u_A Zinc finger, FYVE domai 55.0 6.6 0.00023 23.2 1.9 33 50-82 13-46 (84)
152 1wig_A KIAA1808 protein; LIM d 54.8 10 0.00035 21.4 2.7 38 51-100 5-42 (73)
153 2cup_A Skeletal muscle LIM-pro 54.4 15 0.00051 21.9 3.6 45 52-101 34-78 (101)
154 2e6r_A Jumonji/ARID domain-con 54.2 3.3 0.00011 25.2 0.4 49 49-97 14-65 (92)
155 1a7i_A QCRP2 (LIM1); LIM domai 54.1 3 0.0001 24.1 0.2 41 51-102 7-47 (81)
156 2gmg_A Hypothetical protein PF 53.4 3.7 0.00013 25.8 0.5 24 70-99 71-94 (105)
157 1v6g_A Actin binding LIM prote 53.2 8.1 0.00028 22.2 2.1 39 52-102 16-54 (81)
158 2egq_A FHL1 protein; LIM domai 53.1 7 0.00024 22.2 1.8 42 51-102 15-59 (77)
159 2ehe_A Four and A half LIM dom 52.7 11 0.00037 21.6 2.6 41 51-101 15-55 (82)
160 1dvp_A HRS, hepatocyte growth 52.7 5.8 0.0002 27.8 1.6 34 50-83 160-194 (220)
161 4gne_A Histone-lysine N-methyl 51.3 12 0.00042 23.4 2.8 47 49-101 13-65 (107)
162 1x6a_A LIMK-2, LIM domain kina 50.8 10 0.00035 21.7 2.3 39 51-101 15-53 (81)
163 1m3v_A FLIN4, fusion of the LI 50.3 13 0.00044 23.3 2.8 52 51-103 32-83 (122)
164 2cuq_A Four and A half LIM dom 50.1 9.2 0.00031 21.8 2.0 39 51-101 15-53 (80)
165 3zyq_A Hepatocyte growth facto 50.0 6.7 0.00023 27.7 1.5 34 50-83 163-197 (226)
166 2dlo_A Thyroid receptor-intera 49.0 8 0.00027 22.2 1.6 40 51-102 15-54 (81)
167 1y02_A CARP2, FYVE-ring finger 47.9 7.5 0.00025 24.9 1.4 46 50-96 18-64 (120)
168 3mpx_A FYVE, rhogef and PH dom 47.8 3.9 0.00013 31.3 0.0 50 50-99 374-430 (434)
169 2l3k_A Rhombotin-2, linker, LI 47.6 9.1 0.00031 24.0 1.8 43 51-97 36-78 (123)
170 2d8v_A Zinc finger FYVE domain 47.3 9.5 0.00032 21.9 1.6 32 49-84 6-38 (67)
171 1x3h_A Leupaxin; paxillin fami 46.8 8.1 0.00028 22.1 1.3 40 51-102 15-54 (80)
172 2cs3_A Protein C14ORF4, MY039 46.6 45 0.0015 19.9 4.7 37 49-86 13-51 (93)
173 2iyb_E Testin, TESS, TES; LIM 44.4 12 0.0004 20.5 1.7 41 52-102 3-45 (65)
174 2l4z_A DNA endonuclease RBBP8, 44.2 8.8 0.0003 24.3 1.3 39 51-100 61-99 (123)
175 1wee_A PHD finger family prote 43.2 11 0.00037 21.5 1.5 48 49-97 14-65 (72)
176 1wem_A Death associated transc 42.5 28 0.00095 19.9 3.3 47 51-98 16-70 (76)
177 3vhs_A ATPase wrnip1; zinc fin 40.9 3.5 0.00012 19.1 -0.7 11 91-101 8-18 (29)
178 1b8t_A Protein (CRP1); LIM dom 40.6 14 0.00047 25.1 1.9 40 51-101 115-154 (192)
179 2jvx_A NF-kappa-B essential mo 40.5 6.3 0.00022 18.6 0.1 11 90-100 4-14 (28)
180 3a1b_A DNA (cytosine-5)-methyl 35.0 28 0.00097 23.4 2.7 33 49-85 77-112 (159)
181 1rut_X Flinc4, fusion protein 34.1 28 0.00094 23.4 2.6 27 53-80 71-97 (188)
182 1j2o_A FLIN2, fusion of rhombo 33.9 40 0.0014 20.6 3.2 35 51-86 30-65 (114)
183 2jne_A Hypothetical protein YF 32.9 14 0.00048 22.9 0.9 40 52-100 33-72 (101)
184 2xjy_A Rhombotin-2; oncoprotei 32.4 30 0.001 21.6 2.4 49 52-101 30-78 (131)
185 2pv0_B DNA (cytosine-5)-methyl 30.7 40 0.0014 26.0 3.2 45 50-97 92-147 (386)
186 2jtn_A LIM domain-binding prot 30.3 27 0.00094 23.3 2.1 13 90-102 120-132 (182)
187 2pk7_A Uncharacterized protein 27.9 24 0.00082 20.2 1.2 12 90-101 9-20 (69)
188 2lq6_A Bromodomain-containing 27.3 21 0.00072 21.3 1.0 33 51-84 17-51 (87)
189 1l8d_A DNA double-strand break 27.2 14 0.00049 22.7 0.2 11 90-100 48-58 (112)
190 2xqn_T Testin, TESS; metal-bin 26.5 36 0.0012 21.1 2.0 46 51-101 30-75 (126)
191 2jny_A Uncharacterized BCR; st 25.8 22 0.00076 20.2 0.8 11 90-100 11-21 (67)
192 2jrp_A Putative cytoplasmic pr 25.5 33 0.0011 20.4 1.6 40 52-100 3-42 (81)
193 1wew_A DNA-binding family prot 25.5 58 0.002 18.7 2.7 48 50-98 15-72 (78)
194 2csz_A Synaptotagmin-like prot 25.4 28 0.00096 20.4 1.2 15 49-63 23-37 (76)
195 2jr6_A UPF0434 protein NMA0874 25.2 24 0.00082 20.1 0.9 12 90-101 9-20 (68)
196 2kdx_A HYPA, hydrogenase/ureas 25.0 42 0.0015 20.9 2.2 25 68-99 75-100 (119)
197 2hf1_A Tetraacyldisaccharide-1 24.9 24 0.00081 20.2 0.8 12 90-101 9-20 (68)
198 2jmo_A Parkin; IBR, E3 ligase, 24.7 4.7 0.00016 23.8 -2.4 14 71-84 55-68 (80)
199 2kpi_A Uncharacterized protein 24.7 24 0.00083 19.3 0.8 11 90-100 11-21 (56)
200 3o70_A PHD finger protein 13; 23.5 36 0.0012 19.2 1.4 47 49-97 17-66 (68)
201 3pwf_A Rubrerythrin; non heme 23.2 45 0.0015 22.4 2.1 9 90-98 154-162 (170)
202 2ct7_A Ring finger protein 31; 22.0 14 0.00049 21.8 -0.6 14 71-84 48-61 (86)
203 2jyp_A Aragonite protein AP7; 21.9 21 0.00072 17.2 0.2 19 50-68 8-26 (36)
204 2rgt_A Fusion of LIM/homeobox 21.8 1.2E+02 0.004 19.8 4.0 45 51-101 33-77 (169)
205 2js4_A UPF0434 protein BB2007; 20.3 25 0.00087 20.2 0.3 11 90-100 9-19 (70)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=101.40 Aligned_cols=68 Identities=29% Similarity=0.682 Sum_probs=56.1
Q ss_pred cccccceecccccCCCCcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...++..++...... .++.+|+||++.+..++.+..++|+|.||..|+..|++. +.+||+||+++.+.
T Consensus 6 i~~lp~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQ-SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCS-SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcccc-CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 456677777654433 567899999999999888888999999999999999975 47999999998754
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=104.59 Aligned_cols=68 Identities=28% Similarity=0.656 Sum_probs=55.9
Q ss_pred cccccceecccccCCCCcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 33 EQLVNIWEDRFELGSRAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
.+.++...+........++..|+||++.+..++.+..++|+|.||..||..|++. +.+||+||.++..
T Consensus 22 i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 22 IDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp HHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred HHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4456666666555444677899999999999888888999999999999999975 5799999998864
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=93.69 Aligned_cols=54 Identities=43% Similarity=1.021 Sum_probs=46.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
.++..|+||++.+..++.+..++|+|.||..|+..|++. +.+||+||.++....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcC
Confidence 467789999999988777888999999999999999975 468999999986544
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=3.4e-16 Score=95.79 Aligned_cols=59 Identities=36% Similarity=0.840 Sum_probs=50.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTGH 108 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~ 108 (132)
.++.+|+||++.+..++.+..++|+|.||..||..|++. +.+||+||.++.......++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCCC
Confidence 457799999999998877788899999999999999975 47999999999876655543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=94.29 Aligned_cols=55 Identities=29% Similarity=0.694 Sum_probs=47.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
.++..|+||++.+..+.....++|+|.||..||.+|++.+ .+||+||.++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccccc
Confidence 4577899999999988888888999999999999999754 699999999865443
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.63 E-value=1.5e-16 Score=91.10 Aligned_cols=51 Identities=47% Similarity=1.073 Sum_probs=44.9
Q ss_pred CcccccccccccccCCCceEEeC-CCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
+++.+|+||++++..++.+..++ |+|.||..|+.+|++. +.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 45678999999999888888886 9999999999999975 579999999874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.59 E-value=1.3e-15 Score=99.45 Aligned_cols=62 Identities=21% Similarity=0.477 Sum_probs=47.1
Q ss_pred cccccccccccccCCC---------------ceEEeCCCCcccHHhHHHHHh----cCCCCCCCCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGE---------------EIRELSCHHLFHAVCLDTWIS----NNYAICPVCHDSIAPSRWLTGHGE 110 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~~~~~~~~~~~~~ 110 (132)
.+.+|+||++.+..+. ....++|+|.||..||..|+. ..+.+||+||+.+.......+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 4568999999996643 234569999999999999994 234689999999976655544444
Q ss_pred c
Q 042112 111 E 111 (132)
Q Consensus 111 ~ 111 (132)
.
T Consensus 104 m 104 (114)
T 1v87_A 104 M 104 (114)
T ss_dssp C
T ss_pred E
Confidence 3
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=94.70 Aligned_cols=52 Identities=25% Similarity=0.753 Sum_probs=41.0
Q ss_pred cccccccccccccC-----------CCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEE-----------GEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~-----------~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
++++|+||++++.+ ++.++.+ +|+|.||..||.+|++. +.+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 45678888888854 3435555 69999999999999985 47999999988644
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.55 E-value=4.4e-15 Score=84.86 Aligned_cols=51 Identities=25% Similarity=0.708 Sum_probs=42.7
Q ss_pred CcccccccccccccCCC-ceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGE-EIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
.++.+|+||++.+.+++ .+..++|+|.||..|+.+|++.+ .+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 35678999999986644 45667999999999999999764 89999999875
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=4.9e-15 Score=88.85 Aligned_cols=56 Identities=29% Similarity=0.656 Sum_probs=46.0
Q ss_pred CcccccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEG----EEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWL 105 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 105 (132)
+++.+|+||++.+.+. +....++|||.||..|+.+|++. +.+||+||.++...+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhhee
Confidence 5677899999998763 34466799999999999999975 47999999999766544
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=89.14 Aligned_cols=62 Identities=23% Similarity=0.569 Sum_probs=48.0
Q ss_pred cCCCCcccccccccccccCCCceEEeCCC-----CcccHHhHHHHHhcC-CCCCCCCCCCCCCCCCCCC
Q 042112 45 LGSRAEAVECAVCLSHIEEGEEIRELSCH-----HLFHAVCLDTWISNN-YAICPVCHDSIAPSRWLTG 107 (132)
Q Consensus 45 ~~~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~~~~~~ 107 (132)
.....++..|.||++++.+++.. .+||+ |.||..||++|+..+ +.+||+||.++.......+
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 33445678999999999876655 47996 999999999999643 3589999999976554433
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=85.53 Aligned_cols=56 Identities=20% Similarity=0.505 Sum_probs=46.4
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTGH 108 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~ 108 (132)
++...|+||++.+.+ +..+ +|+|.||..||..|++. +..||+||.++.........
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 567899999999886 4455 99999999999999975 47999999999876665543
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=85.54 Aligned_cols=52 Identities=29% Similarity=0.662 Sum_probs=43.2
Q ss_pred CcccccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEG----EEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
.+...|+||++.+.+. ..+..++|+|.||..|+..|+.. +..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4677899999998763 23466799999999999999975 5799999998854
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.49 E-value=1.9e-14 Score=93.28 Aligned_cols=51 Identities=25% Similarity=0.602 Sum_probs=41.9
Q ss_pred cccccccccccccCCC---------------ceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGE---------------EIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
+++.|+||++.+...- .+..++|+|.||..||..|+.. +.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 5678999999987541 2455799999999999999985 5799999998753
No 15
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=84.42 Aligned_cols=52 Identities=21% Similarity=0.584 Sum_probs=43.3
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
.++..|+||++.+.++ ..++|||.||..|+..|++.++..||+||+++...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4578899999998873 447999999999999999544578999999987543
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=84.90 Aligned_cols=53 Identities=30% Similarity=0.669 Sum_probs=43.8
Q ss_pred cccccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEG----EEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
++.+|+||++.+.++ +.+..++|||.||..|+.+|++. +.+||+||+++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccc
Confidence 456899999998753 33466799999999999999975 579999999987654
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=84.60 Aligned_cols=52 Identities=25% Similarity=0.643 Sum_probs=43.5
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN--NYAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~~~~~~~ 103 (132)
.++..|+||++.+.+ +..++|||.||..|+..|++. ++..||+||.++....
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 567799999999886 666799999999999999962 3468999999987554
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=87.56 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=43.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
.++..|+||++.+.+ ...++|+|.||..|+..|+.. +..||+||.++.....
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhc
Confidence 456789999999876 566899999999999999975 4789999999875443
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=86.70 Aligned_cols=54 Identities=24% Similarity=0.604 Sum_probs=45.1
Q ss_pred CcccccccccccccCCCc-eEEeCCCCcccHHhHHHHHhcC--CCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDTWISNN--YAICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~wl~~~--~~~CP~Cr~~~~~~ 102 (132)
.+..+|+||++.+.+.+. +..++|||.||..|+..|+..+ ...||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999987664 6667999999999999999653 36899999988654
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.45 E-value=9e-14 Score=84.87 Aligned_cols=55 Identities=13% Similarity=0.392 Sum_probs=45.9
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
.++..|+||++.+.+ +..++|||.||..||..|+..++..||+||.++.......
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 457799999999887 6668999999999999999754678999999987654433
No 21
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=7.9e-14 Score=82.40 Aligned_cols=55 Identities=18% Similarity=0.427 Sum_probs=43.5
Q ss_pred cccccccccc-cccCCCce-EEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLS-HIEEGEEI-RELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 50 ~~~~C~IC~~-~~~~~~~~-~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
++..|+||++ .+.++... ..++|||.||..|+.+|+..++..||+||.++.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 4568999999 77665433 3469999999999999986555789999999875543
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.44 E-value=6.7e-14 Score=83.26 Aligned_cols=50 Identities=30% Similarity=0.749 Sum_probs=41.7
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
+++..|+||++.+.++ ...++|||.||..|+..|++. +.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 4567899999998652 466799999999999999975 4799999998863
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=83.11 Aligned_cols=52 Identities=17% Similarity=0.539 Sum_probs=42.6
Q ss_pred CcccccccccccccCCCceEEeC-CCCcccHHhHHHHHhcC-CCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNN-YAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~~ 103 (132)
.++..|+||++.+.+ +..++ |+|.||..||..|++.+ ...||+||+++...+
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 467899999999887 56688 99999999999999643 258999999865443
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.4e-14 Score=84.58 Aligned_cols=50 Identities=26% Similarity=0.745 Sum_probs=42.7
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
.++..|+||++.+.+ ..++|+|.||..|+..|+.. +..||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 456789999999876 56899999999999999974 589999999987544
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=6.4e-14 Score=89.72 Aligned_cols=56 Identities=23% Similarity=0.661 Sum_probs=45.8
Q ss_pred CcccccccccccccCCCceEE-eCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRE-LSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTG 107 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 107 (132)
.++..|+||++.+.+ +.. ++|||.||..||..|+..+...||+||.++........
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh
Confidence 356789999999986 666 79999999999999997544689999999976554433
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.41 E-value=4.6e-14 Score=86.19 Aligned_cols=56 Identities=27% Similarity=0.530 Sum_probs=45.3
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcC------CCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN------YAICPVCHDSIAPSRWLTG 107 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~------~~~CP~Cr~~~~~~~~~~~ 107 (132)
.++..|+||++.+.+ +..++|||.||..|+..|+... ...||+||.++.......+
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 467789999999877 4557999999999999999642 4689999999976554443
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=83.55 Aligned_cols=48 Identities=17% Similarity=0.448 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
.+...|+||++.+.+ +..++|+|.||..|+..|++. ...||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 456789999999876 566899999999999999975 578999999985
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.40 E-value=1.1e-13 Score=93.41 Aligned_cols=48 Identities=27% Similarity=0.812 Sum_probs=41.4
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
++..|+||++.+.+ +..++|||.||..||..|+.. +.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 34579999999876 677899999999999999974 5789999998854
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=2.7e-13 Score=83.56 Aligned_cols=55 Identities=27% Similarity=0.574 Sum_probs=44.7
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcC-----CCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN-----YAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-----~~~CP~Cr~~~~~~~~~~ 106 (132)
.++..|+||++.+.+ +..++|+|.||..|+..|+... ...||+||.++.......
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 456789999999877 4568999999999999999652 468999999987654433
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.4e-13 Score=83.08 Aligned_cols=56 Identities=30% Similarity=0.620 Sum_probs=45.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc-----CCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN-----NYAICPVCHDSIAPSRWLTG 107 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~-----~~~~CP~Cr~~~~~~~~~~~ 107 (132)
.+...|+||++.+.+ +..++|+|.||..|+..|+.. +...||+||..+.......+
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 457799999999876 455799999999999999964 24789999999986555444
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=4.1e-13 Score=88.90 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=42.6
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
++..|+||++.+.+ +..++|||.||..||..|+..+...||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46689999999886 66689999999999999997555689999999975
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.37 E-value=5.1e-14 Score=92.74 Aligned_cols=52 Identities=29% Similarity=0.658 Sum_probs=1.1
Q ss_pred cccccccccccccCC-------------Cc--eEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEG-------------EE--IRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~-------------~~--~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
+++.|+||++++.+. +. +..++|+|.||..||.+|+.. +.+||+||+++..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEFQ 113 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeeee
Confidence 467899999999752 22 222489999999999999985 57999999987544
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.9e-13 Score=77.51 Aligned_cols=44 Identities=27% Similarity=0.721 Sum_probs=37.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN--NYAICPVC 95 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~C 95 (132)
+++..|+||++.+.+ +..++|||.||..||.+|++. ++..||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 567899999999886 566799999999999999963 34689998
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.35 E-value=4.4e-13 Score=88.95 Aligned_cols=55 Identities=29% Similarity=0.680 Sum_probs=45.2
Q ss_pred CcccccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEG----EEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
.++.+|+||++.+.++ +.+..++|||.||..||.+|++. +.+||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 4567899999998763 33477899999999999999975 4799999999876544
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=81.49 Aligned_cols=49 Identities=18% Similarity=0.577 Sum_probs=41.4
Q ss_pred CcccccccccccccCCCceEEeC-CCCcccHHhHHHHHhc-CCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISN-NYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~-~~~~CP~Cr~~~~ 100 (132)
.++..|+||++.+.+ +..++ |||.||..||..|+.. ++..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 567899999999886 56688 9999999999999953 3368999999873
No 36
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=79.50 Aligned_cols=53 Identities=23% Similarity=0.548 Sum_probs=42.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcC-CCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN-YAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~~ 103 (132)
+...+|+||.+.+..++... .|+|.||..||.+|++.+ +.+||+||+++....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34578999999998765433 899999999999999643 268999999986443
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=75.61 Aligned_cols=44 Identities=32% Similarity=0.795 Sum_probs=36.7
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN--NYAICPVC 95 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~C 95 (132)
.++..|+||++.+.+ +..++|+|.||..||..|+.. ++..||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457789999999987 455799999999999999743 45789998
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.32 E-value=6.5e-13 Score=84.63 Aligned_cols=50 Identities=18% Similarity=0.650 Sum_probs=42.3
Q ss_pred cccccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
+...|+||++.+.+ +..+ +|||.||..|+..|+.. +..||+||.++....
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhh
Confidence 46789999999886 5556 89999999999999975 478999999887543
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.32 E-value=1e-12 Score=86.34 Aligned_cols=53 Identities=25% Similarity=0.535 Sum_probs=44.6
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
.++..|+||++.+.+ +..++|||.||..||..|+..++..||+||.++.....
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 567899999999887 56689999999999999996544589999999876543
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=2.2e-12 Score=83.60 Aligned_cols=55 Identities=25% Similarity=0.686 Sum_probs=44.2
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCC--CCCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNY--AICPVCHDSIAPSRWLTG 107 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~--~~CP~Cr~~~~~~~~~~~ 107 (132)
+...|+||++.+.+ +..++|||.||..|+..|+..+. ..||+||.++.......+
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 45689999999876 44579999999999999997432 489999999987655444
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=88.34 Aligned_cols=50 Identities=18% Similarity=0.483 Sum_probs=43.1
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
+...|+||++.+.+ +..++|||.||..||..|+..+...||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999887 666899999999999999976545899999999765
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.29 E-value=4.6e-12 Score=77.71 Aligned_cols=55 Identities=18% Similarity=0.527 Sum_probs=42.8
Q ss_pred CcccccccccccccCCCceEEe--CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
+++.+|+||++++...+. ..+ +|||.||..|+..+....+..||.||+++.....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 567789999998865332 233 4999999999999885455789999999876544
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=2.7e-12 Score=82.97 Aligned_cols=50 Identities=18% Similarity=0.594 Sum_probs=42.7
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
.++..|+||++.+.+ +..+ +|||.||..||..|+.. +..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 456789999999876 5666 99999999999999975 47899999998754
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.29 E-value=1.7e-12 Score=84.89 Aligned_cols=54 Identities=24% Similarity=0.600 Sum_probs=45.0
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
++..|+||++.+.+ +..++|||.||..||..|+...+..||+||.++.......
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 46789999999876 5668999999999999999754578999999987655443
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.28 E-value=4.9e-13 Score=87.39 Aligned_cols=49 Identities=20% Similarity=0.648 Sum_probs=42.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
.++..|+||++.+.+ +..++|||.||..|+..|+..++..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 457789999999886 5667999999999999999654578999999885
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.28 E-value=2.1e-12 Score=89.42 Aligned_cols=50 Identities=24% Similarity=0.618 Sum_probs=42.3
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
.+...|+||++.+.+ +..+ +|||.||..||..|+..++..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 356699999999887 5555 9999999999999998546789999999853
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.28 E-value=1.5e-13 Score=93.34 Aligned_cols=51 Identities=18% Similarity=0.412 Sum_probs=43.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
+++..|+||++.+.+ +..++|||.||..||..|+..+...||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 567899999999887 566899999999999999975545899999987544
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=5.6e-12 Score=83.53 Aligned_cols=54 Identities=30% Similarity=0.667 Sum_probs=44.2
Q ss_pred CcccccccccccccCC----CceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEG----EEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~----~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
++...|+||++.+.+. .....++|||.||..|+.+|+.. +.+||+||.++...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhc
Confidence 4567899999998752 33466799999999999999975 479999999987554
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=6.3e-12 Score=72.23 Aligned_cols=48 Identities=21% Similarity=0.503 Sum_probs=39.5
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
.+...|+||++.+.+ +..++|+|.||..|+..| ...||+||+++....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence 456789999999887 566899999999999873 468999999886543
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.18 E-value=1.8e-11 Score=72.21 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCceEEe--CCCCc-ccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHL-FHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
+++.+|+||++...+ ...+ ||||. |+..|+..|.+. +..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 456789999998665 4555 99999 899999999975 478999999884
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.15 E-value=2.9e-11 Score=93.77 Aligned_cols=49 Identities=24% Similarity=0.643 Sum_probs=42.0
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+||++.+.+ +..+||||.||..|+..|+..++..||+||.++...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999998866 677899999999999999974457899999988654
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.13 E-value=5.1e-11 Score=76.27 Aligned_cols=54 Identities=7% Similarity=0.056 Sum_probs=46.1
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
.+...|+||++.|.+ +..++|||.|+..||..|+.. +.+||+||.++......+
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEE
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceE
Confidence 457899999999998 777899999999999999974 589999999987654443
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.12 E-value=3.2e-11 Score=83.71 Aligned_cols=53 Identities=25% Similarity=0.535 Sum_probs=44.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
++...|+||++.+.+ +..++|||.||..|+..|+..++..||+||.++.....
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence 567899999999887 56689999999999999996544589999999876543
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.12 E-value=5.1e-11 Score=74.06 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=44.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRW 104 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~ 104 (132)
.+...|+||++.|++ +..++|||.|+..||..|+.. +.+||+||.++.....
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGC
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhc
Confidence 457899999999998 777899999999999999975 5799999998865443
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.10 E-value=9.8e-11 Score=74.68 Aligned_cols=54 Identities=4% Similarity=-0.027 Sum_probs=45.9
Q ss_pred CcccccccccccccCCCceEEeCCC-CcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCH-HLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
.++..|+||++.|++ +..++|| |.|+..||..|+.. +.+||+||.++......+
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEE
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceE
Confidence 457799999999998 7778999 99999999999975 578999999987654443
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.09 E-value=6.2e-11 Score=69.68 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=39.4
Q ss_pred CcccccccccccccCCCceEEe--CCCCc-ccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHL-FHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
+.+..|+||++...+ ...+ ||||. ||..|+..|.+. +..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 356789999998665 4445 99998 999999999875 478999999884
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.8e-11 Score=80.19 Aligned_cols=50 Identities=26% Similarity=0.575 Sum_probs=41.6
Q ss_pred cccccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWL 105 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~ 105 (132)
+...|+||++.+.+ +..+ +|||.||..||..|+. ..||+||.++......
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCC
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccc
Confidence 46789999999877 5557 9999999999999986 5799999998654433
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.08 E-value=3.3e-11 Score=72.94 Aligned_cols=44 Identities=27% Similarity=0.608 Sum_probs=37.8
Q ss_pred CcccccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHL-FHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
+++..|+||++.+.+ +..+||||. ||..|+..| ..||+||+++.
T Consensus 22 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 346789999998776 677899999 999999987 57999999875
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=1.3e-10 Score=85.70 Aligned_cols=55 Identities=5% Similarity=0.082 Sum_probs=45.6
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
.+...|+||++.+.+ +..++|||.||..||..|+..++.+||+||.++......+
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 457789999999988 7778999999999999999754456999999997554433
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2.8e-10 Score=71.90 Aligned_cols=54 Identities=19% Similarity=0.449 Sum_probs=42.7
Q ss_pred CcccccccccccccCCCceEEeC-CCCcccHHhHHHHHhcC-----CCCCCC--CCCC-CCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELS-CHHLFHAVCLDTWISNN-----YAICPV--CHDS-IAPSRWL 105 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~wl~~~-----~~~CP~--Cr~~-~~~~~~~ 105 (132)
.++..|+||++.|.+ +..++ |||.|++.||..|+..+ ...||+ |+.. +......
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc
Confidence 456789999999987 67785 99999999999999642 358999 9876 6544433
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=5.4e-10 Score=78.42 Aligned_cols=55 Identities=5% Similarity=0.076 Sum_probs=45.5
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
.+...|+||++.|.+ +..++|||.|+..||..|+..+..+||+|+.++......+
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 567899999999998 7778999999999999999653347999999887554433
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=65.31 Aligned_cols=45 Identities=22% Similarity=0.635 Sum_probs=37.4
Q ss_pred CcccccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHL-FHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
.++..|.||++...+ +..+||+|. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 456789999998665 677899999 99999984 3689999998864
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.91 E-value=1.2e-09 Score=63.67 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=37.9
Q ss_pred CcccccccccccccCCCceEEeCCC--C---cccHHhHHHHHhc-CCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCH--H---LFHAVCLDTWISN-NYAICPVCHDSIAP 101 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~--H---~fh~~Ci~~wl~~-~~~~CP~Cr~~~~~ 101 (132)
++...|.||+++.. +.. .+||. + .||..|+.+|+.. ++.+||+|+.++..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46678999999732 333 46865 4 9999999999953 35789999998753
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.9e-10 Score=67.83 Aligned_cols=44 Identities=27% Similarity=0.592 Sum_probs=36.5
Q ss_pred cccccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHL-FHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
++..|+||++.+.+ +..+||||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 46689999998766 566799999 99999964 3689999998854
No 65
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.88 E-value=2.2e-10 Score=87.32 Aligned_cols=54 Identities=30% Similarity=0.735 Sum_probs=40.8
Q ss_pred CcccccccccccccCCCc-e----EEeCCCCcccHHhHHHHHhcCC----------CCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEE-I----RELSCHHLFHAVCLDTWISNNY----------AICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~-~----~~l~C~H~fh~~Ci~~wl~~~~----------~~CP~Cr~~~~~~ 102 (132)
++..+|+||++.+.++.. + ...+|+|.||..|+.+|++... .+||+||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 467799999999877332 2 1247999999999999995311 3699999988643
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.3e-09 Score=68.56 Aligned_cols=50 Identities=20% Similarity=0.572 Sum_probs=38.6
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc----C---CCCCCC--CCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN----N---YAICPV--CHDS 98 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~----~---~~~CP~--Cr~~ 98 (132)
.+..+|+||++.+..++.....+|+|.||..|+..++.. + ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 346689999999876544443489999999999999842 1 247999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.83 E-value=8.2e-10 Score=67.67 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=37.0
Q ss_pred cccccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHL-FHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
++..|+||++...+ +..+||||. ||..|+..| ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 45689999998766 777899999 999999865 389999998863
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.63 E-value=6e-09 Score=79.90 Aligned_cols=43 Identities=28% Similarity=0.683 Sum_probs=37.5
Q ss_pred cccccccccccccCCCceEEeCCCCc-ccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHL-FHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
++..|+||++.+.+ +..+||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence 46789999999876 777899999 999999987 57999999885
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.3e-08 Score=75.11 Aligned_cols=55 Identities=15% Similarity=0.399 Sum_probs=43.4
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHhcC-CCCCCC--CCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNN-YAICPV--CHDSIAPSRWLT 106 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~-~~~CP~--Cr~~~~~~~~~~ 106 (132)
..+..|+||++.|.+ +... .|||.|++.||..|+..+ ...||+ |++.+.......
T Consensus 179 ~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 179 KIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp BCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred ceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 457799999999987 4444 999999999999999642 357999 999876554433
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.51 E-value=1e-07 Score=60.32 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=37.5
Q ss_pred ccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
-|.+|--++.. ..+.+||+|+||.+|+..|.+++...||.|+.++.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 37788777654 35666999999999999998766689999999875
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.46 E-value=6.5e-08 Score=56.31 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=42.9
Q ss_pred cccccccccccCCCceEEe-CCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISNNYAICPVCHDSIAPSRWLT 106 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~ 106 (132)
..|+|+++.+++ +..+ ++||.|.+.||.+|+.. +.+||+.+.++...+..+
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEE
Confidence 579999999987 6667 89999999999999975 467999999987665543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.27 E-value=6e-07 Score=65.54 Aligned_cols=53 Identities=23% Similarity=0.519 Sum_probs=41.9
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcC-CCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN-YAICPVCHDSIAPSRW 104 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~-~~~CP~Cr~~~~~~~~ 104 (132)
.-..|.||.+....+..+. .|+|.||..|+..|++.+ +..||.|+.+++...+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 4678999999988764333 499999999999999543 3589999998876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.54 E-value=0.00074 Score=42.04 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=36.8
Q ss_pred cccccccccccccCCCceEEeCCC-CcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCH-HLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
+...|..|+-.... .+.|+ |.+|..|+...+.. ...||+|..+++.+
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 56789999976443 23575 99999999999874 47899999988754
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.54 E-value=0.0077 Score=37.47 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=25.8
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHH
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTW 84 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w 84 (132)
++..|.||.+.+.......-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35689999986433222334799999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.68 E-value=0.036 Score=32.16 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=32.6
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcC---CCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN---YAICPVCHDSI 99 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~---~~~CP~Cr~~~ 99 (132)
..+..|.||.+. ++.+.--.|...||..|+...+... .=.||.|+..-
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 456789999753 2322222789999999998877432 12699997643
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.38 E-value=1.1 Score=27.37 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=38.0
Q ss_pred cccccccccccccCCCc--eEE--eCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEE--IRE--LSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~--~~~--l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
....|.||-+++..... +.. ..|+--.|+.|...=.+..+..||.|++.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45689999998643322 221 2677788999998877767789999999886
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.22 E-value=0.3 Score=29.67 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=23.1
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHH
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTW 84 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w 84 (132)
..++.|.||-. +..++....--|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 35778999963 222222111248899999999996
No 78
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.04 E-value=0.21 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.463 Sum_probs=33.2
Q ss_pred CcccccccccccccCCCceEEe--CCCCcccHHhHHHHHh------cCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWIS------NNYAICPVCHDSI 99 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~------~~~~~CP~Cr~~~ 99 (132)
.++..|.+|......++...++ .|...||..|+..=+. ...=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 5677899999865433333333 8899999999875331 1234688886543
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.70 E-value=0.22 Score=26.90 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=28.0
Q ss_pred ccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCC
Q 042112 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHD 97 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 97 (132)
.|.||...-..++.+.--.|...||..|+..=+.. +.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888865333222222278899999999753321 1235999965
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.95 E-value=0.1 Score=30.65 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=32.8
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHhc---CCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWISN---NYAICPVCHDSI 99 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 99 (132)
.+...|.+|..... ++....- .|..-||..|+..-... ..-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 45667999987643 3323322 78899999999754421 134699997654
No 81
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=87.31 E-value=0.67 Score=28.18 Aligned_cols=51 Identities=18% Similarity=0.440 Sum_probs=31.9
Q ss_pred CcccccccccccccCCCceEEe--CCCCcccHHhHHHHH-hcCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWI-SNNYAICPVCHDSI 99 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl-~~~~~~CP~Cr~~~ 99 (132)
+++..|.||...-..+....++ .|.-.||..|+..-. -.+.=.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4678899998754222222323 788999999997532 11223588886543
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.98 E-value=0.3 Score=27.58 Aligned_cols=46 Identities=33% Similarity=0.626 Sum_probs=30.5
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 97 (132)
..+..|.+|.+. ++.+.--.|...||..|+..-+.. +.-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999863 222222278899999999875421 1236999964
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.85 E-value=0.2 Score=31.63 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=30.7
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCH 96 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr 96 (132)
..++.|.+|.+.-...+.+.--.|...||..|+...... ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 457789999876332222333378999999999876531 223566664
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.88 E-value=3.7 Score=24.07 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=32.0
Q ss_pred cccccccccccccCCCceEEe-CCCCcccHHhHHHHH----hcCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWI----SNNYAICPVCHDSIA 100 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl----~~~~~~CP~Cr~~~~ 100 (132)
+...| ||.....++...++- .|..=||..|+.--. ......||.|+..-.
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34456 898877543333333 788999999995321 113467999987653
No 85
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.64 E-value=0.47 Score=26.81 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=34.2
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHh----cCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWIS----NNYAICPVCHDS 98 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~----~~~~~CP~Cr~~ 98 (132)
+++..|++|...+.++...++- .|..=||..|+.--.. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 5667899999887654444433 7889999999864321 134579999653
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.51 E-value=0.55 Score=28.71 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=32.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~~ 100 (132)
..+..|.+|.+. ++-+.--.|.-.||..|+.+=+.. +.-.||.|+..-.
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 456789999864 222222278899999999775532 1226999986543
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.34 E-value=1.2 Score=28.05 Aligned_cols=47 Identities=28% Similarity=0.459 Sum_probs=29.0
Q ss_pred cccccccccccccC-----CCc-eEEeCCCCcccHHhHHH------HHhcCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEE-----GEE-IRELSCHHLFHAVCLDT------WISNNYAICPVCH 96 (132)
Q Consensus 50 ~~~~C~IC~~~~~~-----~~~-~~~l~C~H~fh~~Ci~~------wl~~~~~~CP~Cr 96 (132)
....|.+|+..-.. ++. +.-..|+..||..|+.. -.....-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45679999875321 112 22237999999999952 2233344677775
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.03 E-value=0.27 Score=27.78 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=30.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHDSI 99 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 99 (132)
..+..|.+|.+. ++.+.--.|...||..|+..-+.. +.-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999853 222222268899999999864422 123599997643
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.68 E-value=0.37 Score=33.46 Aligned_cols=50 Identities=16% Similarity=0.413 Sum_probs=34.2
Q ss_pred ccccccccccccCCCc---eEEe-CCCCcccHHhHHHH------Hh----cCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEE---IREL-SCHHLFHAVCLDTW------IS----NNYAICPVCHDSIA 100 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~---~~~l-~C~H~fh~~Ci~~w------l~----~~~~~CP~Cr~~~~ 100 (132)
+..|+||...+.+++. .++- .|..=||..|+.-- +. .....||.|+..-+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3469999999988762 3333 78899999998421 11 01468999987543
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.56 E-value=0.22 Score=34.30 Aligned_cols=47 Identities=32% Similarity=0.571 Sum_probs=31.3
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHDSI 99 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 99 (132)
.++.|.+|... ++-+..-.|...||..|+.+-+.. +.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45779999854 332222278899999998775532 123699998654
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.15 E-value=1.1 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.673 Sum_probs=24.6
Q ss_pred CcccccccccccccCCCceEEe--CCCCcccHHhHH
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLD 82 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~ 82 (132)
++...|++|..++.+++..+.- .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4567899999998776555443 688999999983
No 92
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.00 E-value=1.4 Score=26.26 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=30.2
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
.....|+.|-+.+.. +. +..-+..||..| ..|-.|+.+|...
T Consensus 23 ~~~~~C~~C~~~I~~-~~--v~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG-PF--LVALGKSWHPEE---------FNCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBCCS-CE--EEETTEEECTTT---------CBCSSSCCBCSSS
T ss_pred CCCCCCccCCCEecc-eE--EEECCccccccC---------CccCCCCCCCCCC
Confidence 345789999998853 32 234678899866 6799999888643
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=81.37 E-value=1.9 Score=25.09 Aligned_cols=48 Identities=17% Similarity=0.462 Sum_probs=29.5
Q ss_pred CcccccccccccccCCCceEEe--CCCCcccHHhHHHHH-hcCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWI-SNNYAICPVCH 96 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl-~~~~~~CP~Cr 96 (132)
.++..|.||.+.-..++...++ .|.-.||..|+..-. -.+.=.||.|+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 4577899998764222222333 888999999987422 11123577774
No 94
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.14 E-value=1.6 Score=37.49 Aligned_cols=57 Identities=4% Similarity=-0.029 Sum_probs=45.8
Q ss_pred CCCcccccccccccccCCCceEEeCCC-CcccHHhHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 042112 47 SRAEAVECAVCLSHIEEGEEIRELSCH-HLFHAVCLDTWISNNYAICPVCHDSIAPSRWLTG 107 (132)
Q Consensus 47 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 107 (132)
...+.-.|||-.+-+.+ +..+|-| +.|=+..|.+|+.. +.+||+=|.++......++
T Consensus 887 ~iP~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CSCGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred CCcHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc
Confidence 33567789999999998 7778887 68999999999975 5799999998876544433
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.87 E-value=2.7 Score=27.91 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=30.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHh----------cCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWIS----------NNYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~----------~~~~~CP~Cr~ 97 (132)
..++.|.+|.+. ++-..--.|-..||..|+.+=+. ...=.||.|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 457789999864 22222227889999999996541 12336999974
No 96
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=78.61 E-value=0.86 Score=26.28 Aligned_cols=10 Identities=20% Similarity=0.756 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 042112 91 ICPVCHDSIA 100 (132)
Q Consensus 91 ~CP~Cr~~~~ 100 (132)
.|..|+.++.
T Consensus 29 ~C~~C~~~L~ 38 (76)
T 1iml_A 29 KCEKCGKTLT 38 (76)
T ss_dssp BCTTTCCBCC
T ss_pred CccccCccCC
Confidence 4445544443
No 97
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.76 E-value=1.8 Score=24.86 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=31.3
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
....|+.|.+.+..++.+. .-+..||..| ..|..|+.++...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCCC
Confidence 3467999999988666433 4577899866 6799999888643
No 98
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=77.38 E-value=2.3 Score=22.94 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=28.0
Q ss_pred ccccccccccCCCceEEe--CCCCcccHHhHHHHH---hcCCCCCCCCC
Q 042112 53 ECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWI---SNNYAICPVCH 96 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl---~~~~~~CP~Cr 96 (132)
.|.+|..++.++...+.- .|..=||..|+.--. ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478898887655444432 377889999984321 12356899885
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.72 E-value=0.69 Score=28.65 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=29.1
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhc--CCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN--NYAICPVCHD 97 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~--~~~~CP~Cr~ 97 (132)
+...| ||......+..+.--.|..-||..|+..=... ..-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 33457 88776544432222278899999998653221 1247999964
No 100
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=75.13 E-value=4.7 Score=23.80 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=30.8
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
.....|.-|.+.+.. +. +..-+..||..| ..|-.|...|...
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecc-cE--EEECCceECccC---------CEecCCCCCCCCC
Confidence 455689999998875 22 235678899876 6799999888643
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.83 E-value=0.59 Score=27.76 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=27.9
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhc---C-CCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---N-YAICPVCHD 97 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 97 (132)
..|.+|...-..++.+.--.|...||..|+.+=+.. + .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378888864222222221278899999999854421 1 225888864
No 102
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.64 E-value=0.56 Score=32.86 Aligned_cols=48 Identities=27% Similarity=0.499 Sum_probs=31.1
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHDSI 99 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 99 (132)
..+..|.+|... ++-+..-.|...||..|+.+-+.. +.-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999753 221111178899999999775532 123699998654
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.09 E-value=0.89 Score=27.58 Aligned_cols=50 Identities=20% Similarity=0.474 Sum_probs=32.7
Q ss_pred cccccccccccccCCCceEEe--CCCCcccHHhHHHHHh-------cCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWIS-------NNYAICPVCHDSI 99 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~-------~~~~~CP~Cr~~~ 99 (132)
.+..|.+|...-..+....++ .|...||..|+..=+. .+.=.||.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 456899999764332223334 7899999999986442 1223699996543
No 104
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.97 E-value=3.6 Score=23.07 Aligned_cols=42 Identities=17% Similarity=0.471 Sum_probs=29.7
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+.|.+.+..++... ..-+..||..| ..|-.|..++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EYGGQTWHEHC---------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CSTTCCEETTT---------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEE-EECccccCccc---------CeECCCCCcCCCC
Confidence 457999999888643322 34578889866 5788898887643
No 105
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.53 E-value=3.8 Score=23.07 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=30.0
Q ss_pred cccccccccccccC--CCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEE--GEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
....|+-|.+.+.. ++... ..-+..||..| ..|-.|+.++...
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~C---------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYI-SFEERQWHNDC---------FNCKKCSLSLVGR 48 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCE-ECSSCEECTTT---------CBCSSSCCBCTTS
T ss_pred CCCCCcCCCccccCCCCcceE-EECCcccCccc---------CEeccCCCcCCCC
Confidence 34679999998875 33322 34678899866 5788998888643
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.21 E-value=5.3 Score=26.04 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=29.5
Q ss_pred CcccccccccccccCCCceEE-eCCCCcccHHhHHHH-----H-h----cCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRE-LSCHHLFHAVCLDTW-----I-S----NNYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~w-----l-~----~~~~~CP~Cr~ 97 (132)
..++.|.+|.+. ..+.. -.|-..||..|+.+- + + ...=.|++|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 456679999854 22221 268899999999974 2 1 12237999954
No 107
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.69 E-value=3.8 Score=23.04 Aligned_cols=41 Identities=17% Similarity=0.493 Sum_probs=27.5
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
....|+.|.+.+..++... ..-+..||..| ..|-.|..++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGV-VALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCE-ECSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCCccCCCccCCCceEE-EECCCeEcccC---------CcccccCCcCC
Confidence 3457889988777543222 23567888766 56888888874
No 108
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.06 E-value=0.79 Score=31.01 Aligned_cols=48 Identities=19% Similarity=0.562 Sum_probs=30.9
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHH--h--cCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWI--S--NNYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl--~--~~~~~CP~Cr~ 97 (132)
++...| +|.....++.....- .|..-||..|+.--. . ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456678 999876544333332 788999999995321 1 22457999975
No 109
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.78 E-value=3.9 Score=22.92 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+.|.+.+..++... ..-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM-EYKGSSWHETC---------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE-EETTEEEETTT---------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEE-EECcCeecccC---------CcccccCCccCCC
Confidence 457999999888654333 23567888766 5788998888644
No 110
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.67 E-value=4.9 Score=23.15 Aligned_cols=42 Identities=21% Similarity=0.506 Sum_probs=30.8
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+.|.+.+..++... ..-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECcccccccc---------CchhhCCCccCCC
Confidence 457999999988655433 34578899766 6789998888654
No 111
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.14 E-value=2.8 Score=24.49 Aligned_cols=40 Identities=23% Similarity=0.586 Sum_probs=29.8
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
....|+-|-+.+..++.+. .-+..||..| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL--ALDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE--ETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE--ECCccccccc---------CCcCcCCCCcC
Confidence 4568999999987665443 3467888866 67899988875
No 112
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.93 E-value=5 Score=22.78 Aligned_cols=43 Identities=23% Similarity=0.567 Sum_probs=30.4
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
....|+-|.+.+..++... ..-+..||..| ..|-.|..++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC---------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT---------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc---------CeECCCCCCCCCC
Confidence 4578999999987555433 23567888766 5788898887643
No 113
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.30 E-value=1.6 Score=23.92 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=28.9
Q ss_pred CCcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcC---CCCCCCCC
Q 042112 48 RAEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN---YAICPVCH 96 (132)
Q Consensus 48 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~---~~~CP~Cr 96 (132)
+..+..|.+|.+. ++.+.--.|...||..|+.+-+... .-.||.|+
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3567789999874 2222222788999999988544211 12477764
No 114
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=68.80 E-value=2.3 Score=28.59 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=23.9
Q ss_pred CcccccccccccccCCCc--eEEeCCCCcccHHhH
Q 042112 49 AEAVECAVCLSHIEEGEE--IRELSCHHLFHAVCL 81 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~--~~~l~C~H~fh~~Ci 81 (132)
.++..|.+|..+|..-.. .....|+|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999998754333 333488999998886
No 115
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.75 E-value=4.9 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.489 Sum_probs=28.4
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+.|.+.+.. +. +..-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKEC---------FVCTACRKQLSGQ 44 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTT---------SBCSSSCCBCTTS
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCC---------CccCCCCCcCCcC
Confidence 4579999988864 22 335678889866 5788898888543
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=68.35 E-value=0.81 Score=26.57 Aligned_cols=43 Identities=28% Similarity=0.700 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEe--CCCCcccHHhHHHHHhc---C-CCCCCCCCC
Q 042112 53 ECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWISN---N-YAICPVCHD 97 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~~---~-~~~CP~Cr~ 97 (132)
.|.+|...-.. . ..++ .|...||..|+.+=+.. + .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-D-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-G-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-C-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677653222 1 2223 78899999999854421 1 236888865
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=68.31 E-value=0.88 Score=32.63 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=23.9
Q ss_pred ccccccccccCCCceEEeCCCCcccHHhHHHHHhcC----CCCCCCCCC
Q 042112 53 ECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNN----YAICPVCHD 97 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~----~~~CP~Cr~ 97 (132)
.|.+|...-..++.+..-.|...||..|+.+=+... .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477776532222222212788999999998644221 125999965
No 118
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=67.98 E-value=2.3 Score=23.93 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=28.1
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVC 95 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~C 95 (132)
..|.-|...+.+....+--.|++.||.+|=.---.. =-+||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~-Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS-LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT-SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhh-ccCCcCC
Confidence 469999998854222223379999999995532221 2379988
No 119
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.65 E-value=0.88 Score=31.50 Aligned_cols=45 Identities=27% Similarity=0.523 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHDS 98 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~~ 98 (132)
++.|.+|.+. ++.+..-.|...||..|+.+=+.. +.-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 222222368899999999764421 12369999765
No 120
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.56 E-value=6 Score=23.02 Aligned_cols=43 Identities=28% Similarity=0.573 Sum_probs=30.9
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
....|+.|.+.+...+.+. .-+..||..| ..|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C---------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC---------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT---------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc---------CEEcCCCCCcCCCc
Confidence 4568999999887655433 3567899877 56888888776544
No 121
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=67.38 E-value=2.7 Score=27.53 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=23.3
Q ss_pred CcccccccccccccCCC--ceEEeCCCCcccHHhHH
Q 042112 49 AEAVECAVCLSHIEEGE--EIRELSCHHLFHAVCLD 82 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~--~~~~l~C~H~fh~~Ci~ 82 (132)
.++..|.+|..++..-. ......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46788999999984322 23334788888877744
No 122
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.05 E-value=8.4 Score=22.74 Aligned_cols=42 Identities=21% Similarity=0.582 Sum_probs=30.0
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
....|+-|.+.+...+.+ ..-+..||..| ..|-.|..+|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~C---------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISC---------FRCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTT---------CBCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCC---------CeeCCCCCCCCCC
Confidence 346799999988765543 35678888876 5678888777654
No 123
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.79 E-value=5.5 Score=23.01 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=29.7
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
.....|+-|.+.+.. +.+ ..-+..||..| ..|-.|+.+|...
T Consensus 13 ~~~~~C~~C~~~I~~-~~v--~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIIDE-QPL--IFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCCS-CCC--CCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred cCCCCCccCCCEecc-eEE--EECcceeCCCC---------CEeCCCCCccCCC
Confidence 345689999998873 322 34577888766 6799998888643
No 124
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.36 E-value=1.9 Score=21.50 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=9.7
Q ss_pred cccccccccccccC
Q 042112 50 EAVECAVCLSHIEE 63 (132)
Q Consensus 50 ~~~~C~IC~~~~~~ 63 (132)
++-.||+|+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 45678888877655
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.85 E-value=1.6 Score=27.60 Aligned_cols=45 Identities=27% Similarity=0.493 Sum_probs=26.5
Q ss_pred cccccccccccC----C--Cc-eEEeCCCCcccHHhHHHH------HhcCCCCCCCCC
Q 042112 52 VECAVCLSHIEE----G--EE-IRELSCHHLFHAVCLDTW------ISNNYAICPVCH 96 (132)
Q Consensus 52 ~~C~IC~~~~~~----~--~~-~~~l~C~H~fh~~Ci~~w------l~~~~~~CP~Cr 96 (132)
+.|.+|+..-.. + +. +.-..|+..||..|+... .....-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 468999875421 1 12 222378999999998643 222234566663
No 126
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=63.16 E-value=5.2 Score=22.03 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=28.5
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
...|+.|.+.+. ++ .+..-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEH---------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTT---------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCc---------CEECCCCCCCCC
Confidence 467999999887 33 2235678899866 578899888864
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=63.08 E-value=5.9 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.4
Q ss_pred CcccccccccccccCCCce-EEeCCCCcccHHhHHH
Q 042112 49 AEAVECAVCLSHIEEGEEI-RELSCHHLFHAVCLDT 83 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~ 83 (132)
.+...|.+|...|..-..- ---.||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4566899999998764321 1126999999988654
No 128
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.80 E-value=5.6 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=29.1
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
.....|+-|.+.+.. + .+..-+..||..| ..|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-V--FVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-S--CEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccC-c--EEEECcceeCcCc---------CeeCCCCCCCC
Confidence 345689999998875 2 2235678899876 56888988774
No 129
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.56 E-value=5.6 Score=22.65 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=28.5
Q ss_pred ccccccccccccC--CCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEE--GEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 51 ~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
...|+.|-+.+.. +.... ..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a~~~~wH~~C---------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CFQDSQWHSEC---------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EETTEEEEGGG---------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE-EECCcccCccc---------CChhhCCCcCC
Confidence 4579999998875 22322 34577899877 57888988875
No 130
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.31 E-value=4.4 Score=23.41 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=22.0
Q ss_pred ccccccccccccCCCc-eEEeCCCCcccHHhHH
Q 042112 51 AVECAVCLSHIEEGEE-IRELSCHHLFHAVCLD 82 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~ 82 (132)
+..|.+|...|..-.. .---.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999999875321 1112699999998854
No 131
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.97 E-value=4.9 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=24.4
Q ss_pred CcccccccccccccCCCce-EEeCCCCcccHHhHHH
Q 042112 49 AEAVECAVCLSHIEEGEEI-RELSCHHLFHAVCLDT 83 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~ 83 (132)
.+...|.+|...|..-..- ---.||++||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456899999998764321 1127999999998654
No 132
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.62 E-value=2.8 Score=23.79 Aligned_cols=46 Identities=33% Similarity=0.578 Sum_probs=30.0
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 97 (132)
..+..|.||.+. ++.+.--.|...||..|+..-+.. +.-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 222222278899999999854421 1235999965
No 133
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=61.24 E-value=3.3 Score=22.90 Aligned_cols=45 Identities=31% Similarity=0.699 Sum_probs=28.7
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHD 97 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 97 (132)
.+..|.+|... ++.+.--.|...||..|+.+=+.. +.-.||.|+.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 46789999864 222222278899999999854421 1225888754
No 134
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.10 E-value=3.3 Score=23.18 Aligned_cols=20 Identities=40% Similarity=0.903 Sum_probs=12.9
Q ss_pred HHhcCCCCCCCCCCCCCCCC
Q 042112 84 WISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 84 wl~~~~~~CP~Cr~~~~~~~ 103 (132)
|+..+...||.|+..+...+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCC
T ss_pred CccccceECcCCCCeeEeCC
Confidence 33334467999988886543
No 135
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.99 E-value=8.2 Score=29.61 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=31.0
Q ss_pred ccccccccccccCCCceEEeCCCCc--ccHHhHHHHH-hcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHL--FHAVCLDTWI-SNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~--fh~~Ci~~wl-~~~~~~CP~Cr~~~~~~ 102 (132)
...|++=...+.. .++-..|.|. |=..-+.... +.+.-.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 4578887777655 3566699998 3333233322 22335799999887544
No 136
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=60.80 E-value=4.8 Score=24.30 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=24.4
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHHHH
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDTW 84 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~w 84 (132)
+...|.+|...|..... .---.||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45579999999875322 121279999999996553
No 137
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=60.25 E-value=8.5 Score=21.25 Aligned_cols=43 Identities=23% Similarity=0.597 Sum_probs=30.6
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
....|+-|.+.+..++.+.. .=+..||..| ..|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~C---------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC---------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTT---------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCC---------CcccCCCCCCCCC
Confidence 34689999999887654332 3567788866 4688898887544
No 138
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.87 E-value=4.8 Score=23.79 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=23.6
Q ss_pred cccccccccccccCCCce-EEeCCCCcccHHhHHH
Q 042112 50 EAVECAVCLSHIEEGEEI-RELSCHHLFHAVCLDT 83 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~ 83 (132)
+...|.+|...|.....- ---.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 456799999998753221 1127999999998654
No 139
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=59.61 E-value=9.4 Score=29.16 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=31.2
Q ss_pred ccccccccccccCCCceEEeCCCCc--ccHHhHHHHH-hcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHL--FHAVCLDTWI-SNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~--fh~~Ci~~wl-~~~~~~CP~Cr~~~~~~ 102 (132)
...|++=...+.. .++...|.|. |=..-+-... +.+.-.||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 4468887777655 3566699998 4333333333 22335799999887643
No 140
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=59.34 E-value=1.1 Score=26.66 Aligned_cols=43 Identities=28% Similarity=0.699 Sum_probs=25.4
Q ss_pred ccccccccccCCCceEEe--CCCCcccHHhHHHHHhc---CC-CCCCCCCC
Q 042112 53 ECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWISN---NY-AICPVCHD 97 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~~---~~-~~CP~Cr~ 97 (132)
.|.+|...-.. ...++ .|...||..|+..-+.. +. =.||.|++
T Consensus 28 ~C~vC~~~~d~--~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP--DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG--GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC--cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666544222 22223 78899999999865522 11 36888875
No 141
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.03 E-value=4.9 Score=22.41 Aligned_cols=41 Identities=22% Similarity=0.495 Sum_probs=27.8
Q ss_pred cccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
....|..|.+.+.. +.+ ..-+..||.+| ..|-.|+.++...
T Consensus 4 ~~~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVI--KAMNNSWHPEC---------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-CCE--EETTEEECTTT---------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-eEE--EECcccccccC---------CEeCCCCCcCCCC
Confidence 34679999988763 322 23567888766 5688888877644
No 142
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.87 E-value=5.1 Score=25.74 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=23.4
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHHH
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDT 83 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~ 83 (132)
+...|.+|...|..... .---.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999999875322 11127999999988543
No 143
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=58.58 E-value=5.3 Score=24.86 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=32.7
Q ss_pred ccccccccccccCCCceEEe--CCCCcccHHhHHHHH----h-----cCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWI----S-----NNYAICPVCHDSI 99 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl----~-----~~~~~CP~Cr~~~ 99 (132)
...|++|..++.++...+.- .|..=||..|+.--. . .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45799999998665444433 578899999984211 1 0235799997654
No 144
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=58.15 E-value=6.4 Score=22.13 Aligned_cols=34 Identities=24% Similarity=0.564 Sum_probs=19.2
Q ss_pred CCCcccccccccc-cccCCCceEEeCCCCcccHHh
Q 042112 47 SRAEAVECAVCLS-HIEEGEEIRELSCHHLFHAVC 80 (132)
Q Consensus 47 ~~~~~~~C~IC~~-~~~~~~~~~~l~C~H~fh~~C 80 (132)
...+...|.||+. +|.++-.-.-.-|.-.||..|
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRC 39 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARC 39 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTS
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeeccc
Confidence 3356789999987 555543333224444444444
No 145
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.84 E-value=3.9 Score=22.81 Aligned_cols=39 Identities=26% Similarity=0.546 Sum_probs=26.8
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
...|+-|.+.+.. +.+ ..-+..||..| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~C---------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGI--TYQDQPWHADC---------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TCE--EETTEEECTTT---------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ceE--EECccccccCc---------CEECCCCCCCCC
Confidence 4579999888764 322 23567888766 568888888763
No 146
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=57.71 E-value=7.8 Score=22.34 Aligned_cols=45 Identities=27% Similarity=0.668 Sum_probs=27.2
Q ss_pred cccccccccccccCCCceEEe-C--CC-CcccHHhHHHHHhc---CCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL-S--CH-HLFHAVCLDTWISN---NYAICPVCHDSI 99 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l-~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 99 (132)
+...| ||..... ++ .+.- . |. .-||..|+. +.. +.-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45567 8987532 32 2221 4 55 589999997 422 234699997643
No 147
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.59 E-value=7.4 Score=23.72 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=27.0
Q ss_pred cccccccccccccCCCceEEeC--CC-CcccHHhHHHHHhc---CCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIRELS--CH-HLFHAVCLDTWISN---NYAICPVCHDSI 99 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l~--C~-H~fh~~Ci~~wl~~---~~~~CP~Cr~~~ 99 (132)
+...| ||..... ++.+.-=. |. .-||..|+. +.. ..-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567 9987643 32111113 44 579999997 322 234699997643
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=55.27 E-value=5.3 Score=24.89 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=10.6
Q ss_pred cccHHhHHHHHh
Q 042112 75 LFHAVCLDTWIS 86 (132)
Q Consensus 75 ~fh~~Ci~~wl~ 86 (132)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 149
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=55.18 E-value=2.7 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=16.8
Q ss_pred cccccccccccCCCceEEeCCCCcccHHh
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVC 80 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~C 80 (132)
+.|+.|-...-..+.+. .-|..||+.|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46888877665543322 3467777776
No 150
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=55.09 E-value=5.3 Score=24.83 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=10.6
Q ss_pred cccHHhHHHHHh
Q 042112 75 LFHAVCLDTWIS 86 (132)
Q Consensus 75 ~fh~~Ci~~wl~ 86 (132)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 151
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.04 E-value=6.6 Score=23.24 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=22.4
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHH
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLD 82 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~ 82 (132)
+...|.+|...|..-.. .---.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45689999999865321 1112699999988843
No 152
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.80 E-value=10 Score=21.44 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=26.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
...|+-|.+.+.. +. +..-+..||.+| ..|-.|..++.
T Consensus 5 ~~~C~~C~~~I~~-~~--v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RV--LEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CC--BCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-ee--EEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 4579999888765 22 234577888766 57888888876
No 153
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.43 E-value=15 Score=21.86 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=23.7
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
-.|..|...+.... .. ..=+..||..|..+ .-...|..|..+|.+
T Consensus 34 F~C~~C~~~L~~~~-~~-~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANET-FV-AKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSSC-CE-EETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcCe-eE-CcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 45666666654321 11 22345666666533 223568888777753
No 154
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.17 E-value=3.3 Score=25.19 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=30.4
Q ss_pred CcccccccccccccCCCceEEeCCCCcccHHhHHHHHhc---CCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISN---NYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~---~~~~CP~Cr~ 97 (132)
.++..|.||...-..+..+.--.|...||..|+.+=+.. +.=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 346689999876432222221278899999999753321 1225999965
No 155
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=54.07 E-value=3 Score=24.13 Aligned_cols=41 Identities=24% Similarity=0.626 Sum_probs=27.7
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+.|.+.+..++.+ ..-+..||..| ..|-.|..++...
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~C---------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCC---------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSS---------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeE--EeCCccccccc---------CccCCCCCCCCCC
Confidence 45799999888765543 23567888765 4688888777543
No 156
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=53.37 E-value=3.7 Score=25.85 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=15.1
Q ss_pred eCCCCcccHHhHHHHHhcCCCCCCCCCCCC
Q 042112 70 LSCHHLFHAVCLDTWISNNYAICPVCHDSI 99 (132)
Q Consensus 70 l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~ 99 (132)
..||+.|. +. + .....||.|++.-
T Consensus 71 ~~CG~~F~----~~-~-~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK----AE-I-NIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC----CC-S-SCCSSCSSSCCCC
T ss_pred hhCcCeec----cc-C-CCCCCCcCCCCCc
Confidence 46888881 11 1 1346899998754
No 157
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.16 E-value=8.1 Score=22.19 Aligned_cols=39 Identities=28% Similarity=0.658 Sum_probs=27.8
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
..|+.|.+.+.. +.+ ..-+..||..| ..|-.|++++...
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~wH~~C---------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVV--SALGKTYHPDC---------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTT---------SSCSSSCCCCCSS
T ss_pred CcCccccCEecc-ceE--EECCceeCccC---------CccccCCCCCCCC
Confidence 479999998873 322 24577888766 5788898888643
No 158
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=53.09 E-value=7 Score=22.17 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=29.2
Q ss_pred ccccccccccccC---CCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEE---GEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~---~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+-|.+.+.. +.... ..=+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVV-AYEGQSWHDYC---------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEE-EETTEEEETTT---------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeE-EECcceeCccc---------CEehhcCCCCCCC
Confidence 4579999998874 22222 23577899866 5799998888643
No 159
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.73 E-value=11 Score=21.65 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
...|+.|.+.+..++... ..=+..||..| ..|-.|..++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL-FYEDRHFHEGC---------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC-CCSSCCCBTTT---------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEE-EeCCccccccC---------CeecCCCCccCC
Confidence 357999999887433322 23468888866 578889888763
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.66 E-value=5.8 Score=27.78 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=23.1
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHHH
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDT 83 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~ 83 (132)
++..|.+|...|..-.. .-.-.||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46799999998865321 11126999999888543
No 161
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.32 E-value=12 Score=23.39 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=28.7
Q ss_pred CcccccccccccccCCCceEEeC---CCCcccHHhHHHHHhcC---CCCCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRELS---CHHLFHAVCLDTWISNN---YAICPVCHDSIAP 101 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~---C~H~fh~~Ci~~wl~~~---~~~CP~Cr~~~~~ 101 (132)
.+++.|.+|.+. + .+..=. |...||..|+. +... .-.||.|+-.+..
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 567789999832 2 222213 77999999997 4321 1258877655443
No 162
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.84 E-value=10 Score=21.69 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=27.2
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
...|+.|.+.+.. +. +..-+..||..| ..|-.|..++..
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG-PF--MVAGEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS-CC--BCCTTCCBCTTS---------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCc-eE--EEECCceecccc---------CCccCCCCccCC
Confidence 3479999988873 22 224577888755 678899888854
No 163
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.26 E-value=13 Score=23.30 Aligned_cols=52 Identities=6% Similarity=0.003 Sum_probs=32.6
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPSR 103 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 103 (132)
--.|..|...+.+....-...=+..||..|..+-+.. ...|..|..+|....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 3467777777652111111235667888888876642 237999999997543
No 164
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.13 E-value=9.2 Score=21.81 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=27.8
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
...|+.|.+.+... .+..-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~---~v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG---GVTYRDQPWHREC---------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC---CEESSSSEECTTT---------CBCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc---EEEECCchhhhhh---------CCcccCCCcCCC
Confidence 35799999888652 2235678888766 578889888853
No 165
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.01 E-value=6.7 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=23.6
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHHH
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDT 83 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~ 83 (132)
++..|.+|...|..-.. .-.-.||++||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45689999998875321 11127999999888654
No 166
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.97 E-value=8 Score=22.22 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=28.2
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+-|.+.+.. .. +..-+..||..| ..|..|..++...
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-RI--LRAMGKAYHPGC---------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-CC--EEETTEEECTTT---------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecc-ee--EEECCccccHHh---------cCcccCCCccCCC
Confidence 4579999988874 22 224567888766 6799998888643
No 167
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.89 E-value=7.5 Score=24.94 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=27.8
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHHHHHhcCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDTWISNNYAICPVCH 96 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr 96 (132)
+...|..|...|..-.. .---.||.+||..|....... ...|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHH
Confidence 34589999999865322 111279999999997654432 35666663
No 168
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.77 E-value=3.9 Score=31.30 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=0.0
Q ss_pred cccccccccccccCCCc-eEEeCCCCcccHHhHHHHHhc------CCCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEE-IRELSCHHLFHAVCLDTWISN------NYAICPVCHDSI 99 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~-~~~l~C~H~fh~~Ci~~wl~~------~~~~CP~Cr~~~ 99 (132)
+...|.+|...|..... .-.-.||++||..|-...... ..+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35689999998865321 111279999999998765411 124577665443
No 169
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=47.59 E-value=9.1 Score=24.05 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=24.3
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHD 97 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~ 97 (132)
--.|..|...+..++... ..=+..||..|..+.+.. .|..+..
T Consensus 36 CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~---~~~~~~~ 78 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKI---NGGSGGS 78 (123)
T ss_dssp TCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHH---HTCCCCC
T ss_pred cCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhcc---ccCCCCC
Confidence 456777777765444322 234667777777776642 3454443
No 170
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.30 E-value=9.5 Score=21.89 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=24.8
Q ss_pred CcccccccccccccCCCceEEeCC-CCcccHHhHHHH
Q 042112 49 AEAVECAVCLSHIEEGEEIRELSC-HHLFHAVCLDTW 84 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~C-~H~fh~~Ci~~w 84 (132)
++..-|.||.++- .++-+.| +-.||..|..+.
T Consensus 6 ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 4567899999872 2677889 789999997764
No 171
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.77 E-value=8.1 Score=22.07 Aligned_cols=40 Identities=20% Similarity=0.541 Sum_probs=28.0
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
...|+.|.+.+.. +.+ ..-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYL--SAMDTVWHPEC---------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCE--EETTEEECTTT---------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeE--EECCCeEecCc---------CChhhCCCCCCCC
Confidence 3579999988875 322 23567888766 5788998888654
No 172
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.62 E-value=45 Score=19.93 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=26.9
Q ss_pred CcccccccccccccCCCceEEeC--CCCcccHHhHHHHHh
Q 042112 49 AEAVECAVCLSHIEEGEEIRELS--CHHLFHAVCLDTWIS 86 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l~--C~H~fh~~Ci~~wl~ 86 (132)
.....|.+|.+.+++.--+. -| =.|.||..|-+..++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHH
Confidence 34568999999988743322 22 259999999999884
No 173
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=44.35 E-value=12 Score=20.55 Aligned_cols=41 Identities=20% Similarity=0.478 Sum_probs=28.6
Q ss_pred cccccccccccCCCceEEeCCCCccc--HHhHHHHHhcCCCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFH--AVCLDTWISNNYAICPVCHDSIAPS 102 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh--~~Ci~~wl~~~~~~CP~Cr~~~~~~ 102 (132)
..|+-|.+.+..++... ..-+..|| ..| ..|-.|+.++...
T Consensus 3 ~~C~~C~~~I~~~~~~v-~a~~~~wH~~~~C---------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRV-TYNNFSWHASTEC---------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEE-EETTEEEETTTTT---------SBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEE-EECCCccCCCCCC---------EECCCCCCcCCCC
Confidence 46899999888643322 23578889 766 5788898888543
No 174
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=44.17 E-value=8.8 Score=24.35 Aligned_cols=39 Identities=21% Similarity=0.511 Sum_probs=28.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
...|+-|-+.+.....+ ..-+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v--~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLL--YAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEE--EETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEE--EeCCcEEcccc---------cCcCcCCCccc
Confidence 45899999988764322 24678899877 67999988885
No 175
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=43.23 E-value=11 Score=21.54 Aligned_cols=48 Identities=21% Similarity=0.473 Sum_probs=29.7
Q ss_pred CcccccccccccccCCCceEEe-CCCCcccHHhHHHHHh---cCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIREL-SCHHLFHAVCLDTWIS---NNYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~wl~---~~~~~CP~Cr~ 97 (132)
.+...| ||.....+++..++- .|..=||..|+.--.. .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 445678 798876554433333 7888899999864211 12346888864
No 176
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.52 E-value=28 Score=19.89 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=29.0
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHH--------hcCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWI--------SNNYAICPVCHDS 98 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl--------~~~~~~CP~Cr~~ 98 (132)
...| +|......+..+.--.|..=||..|+.--. ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 898876532222222788999999994211 1235789999653
No 177
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=40.88 E-value=3.5 Score=19.14 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=6.9
Q ss_pred CCCCCCCCCCC
Q 042112 91 ICPVCHDSIAP 101 (132)
Q Consensus 91 ~CP~Cr~~~~~ 101 (132)
.||+|.+..+.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 57888665443
No 178
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=40.58 E-value=14 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.494 Sum_probs=26.9
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
...|+.|.+.+..++.+. .-+..||..| ..|-.|+.++..
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSC---------FRCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTT---------CBCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhc---------CCccccCCCCCC
Confidence 346999988887655443 3466777755 567788777754
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=40.48 E-value=6.3 Score=18.65 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 042112 90 AICPVCHDSIA 100 (132)
Q Consensus 90 ~~CP~Cr~~~~ 100 (132)
..||+|+...+
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46888887554
No 180
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.99 E-value=28 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.533 Sum_probs=23.5
Q ss_pred CcccccccccccccCCCceEEe---CCCCcccHHhHHHHH
Q 042112 49 AEAVECAVCLSHIEEGEEIREL---SCHHLFHAVCLDTWI 85 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~l---~C~H~fh~~Ci~~wl 85 (132)
..+..|.+|-+. ..+..- .|...||..||+..+
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhc
Confidence 346789999854 222221 488999999999887
No 181
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=34.15 E-value=28 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=15.8
Q ss_pred ccccccccccCCCceEEeCCCCcccHHh
Q 042112 53 ECAVCLSHIEEGEEIRELSCHHLFHAVC 80 (132)
Q Consensus 53 ~C~IC~~~~~~~~~~~~l~C~H~fh~~C 80 (132)
.|..|.+.+...+.+. ..-++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i-~a~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RAQGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEECGGG
T ss_pred ccccCCCccccCcEEE-EcCCCEEeCCC
Confidence 5777777666543322 23466777766
No 182
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.93 E-value=40 Score=20.59 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=17.7
Q ss_pred ccccccccccccC-CCceEEeCCCCcccHHhHHHHHh
Q 042112 51 AVECAVCLSHIEE-GEEIRELSCHHLFHAVCLDTWIS 86 (132)
Q Consensus 51 ~~~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~wl~ 86 (132)
--.|..|...+.. +.... ..=+..||..|..+-+.
T Consensus 30 CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCeeE-EECCeeechHHHHHHhC
Confidence 3466666666543 11111 12345667777666553
No 183
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.95 E-value=14 Score=22.87 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=24.1
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
..||.|..++.... ++.+|..|-..... ...||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCcceecC-------CEEECccccchhhc--cccCcchhhHHH
Confidence 78999998875422 12224444333222 357999998874
No 184
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.44 E-value=30 Score=21.57 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=24.3
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
-.|..|...+......-...=+..||..|..+-+.. ...|+.|..+|..
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 456666666543111111234456666666654421 1257777666643
No 185
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.67 E-value=40 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.421 Sum_probs=29.5
Q ss_pred cccccccccccccCCCceEEe--CCCCcccHHhHHHHHhcC---------CCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWISNN---------YAICPVCHD 97 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~~~---------~~~CP~Cr~ 97 (132)
.+..|.+|-+.- +-+..- .|...||..||+..+..+ .=.|=+|.-
T Consensus 92 ~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 466788887642 222222 688999999999987211 126888853
No 186
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.30 E-value=27 Score=23.30 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCC
Q 042112 90 AICPVCHDSIAPS 102 (132)
Q Consensus 90 ~~CP~Cr~~~~~~ 102 (132)
..|..|..+|...
T Consensus 120 ~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 120 TKCAACQLGIPPT 132 (182)
T ss_dssp CCCTTTCCCCCSS
T ss_pred cccccCCCccCCC
Confidence 4688887777543
No 187
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.95 E-value=24 Score=20.21 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 042112 90 AICPVCHDSIAP 101 (132)
Q Consensus 90 ~~CP~Cr~~~~~ 101 (132)
-.||+|+.++..
T Consensus 9 L~CP~ck~~L~~ 20 (69)
T 2pk7_A 9 LACPICKGPLKL 20 (69)
T ss_dssp CCCTTTCCCCEE
T ss_pred eeCCCCCCcCeE
Confidence 589999988753
No 188
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=27.32 E-value=21 Score=21.30 Aligned_cols=33 Identities=24% Similarity=0.544 Sum_probs=21.0
Q ss_pred ccccccccccccCCCceEE--eCCCCcccHHhHHHH
Q 042112 51 AVECAVCLSHIEEGEEIRE--LSCHHLFHAVCLDTW 84 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~--l~C~H~fh~~Ci~~w 84 (132)
...|.||.+.- .+..+.- -.|.-.||..|...-
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 45799997531 1222221 258899999998763
No 189
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.20 E-value=14 Score=22.69 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=7.7
Q ss_pred CCCCCCCCCCC
Q 042112 90 AICPVCHDSIA 100 (132)
Q Consensus 90 ~~CP~Cr~~~~ 100 (132)
..||+|.+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 46888877664
No 190
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.53 E-value=36 Score=21.05 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=26.4
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
--.|..|...+... .-...=+..||..|..+-+ ...|+.|..+|.+
T Consensus 30 CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC--EEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 34677776666532 1222345667777765532 2467777777764
No 191
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.75 E-value=22 Score=20.25 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=9.3
Q ss_pred CCCCCCCCCCC
Q 042112 90 AICPVCHDSIA 100 (132)
Q Consensus 90 ~~CP~Cr~~~~ 100 (132)
-.||+|+.++.
T Consensus 11 L~CP~ck~~L~ 21 (67)
T 2jny_A 11 LACPKDKGPLR 21 (67)
T ss_dssp CBCTTTCCBCE
T ss_pred hCCCCCCCcCe
Confidence 57999999875
No 192
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.48 E-value=33 Score=20.36 Aligned_cols=40 Identities=23% Similarity=0.663 Sum_probs=20.1
Q ss_pred cccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCC
Q 042112 52 VECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIA 100 (132)
Q Consensus 52 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~ 100 (132)
..||.|..++....... .|..|-..... +..||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~~~-------~C~~C~~~~~~--~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTA-------HCETCAKDFSL--QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSSEE-------ECTTTCCEEEE--EEECSSSCSCCC
T ss_pred CCCCCCCCccccCCCce-------ECccccccCCC--cccCcchhhHHH
Confidence 46888887765433211 12222222111 236888877764
No 193
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.46 E-value=58 Score=18.66 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=28.9
Q ss_pred cccccccccccccCCCceEEe--CCCCcccHHhHHHHHhc--------CCCCCCCCCCC
Q 042112 50 EAVECAVCLSHIEEGEEIREL--SCHHLFHAVCLDTWISN--------NYAICPVCHDS 98 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~wl~~--------~~~~CP~Cr~~ 98 (132)
+...| ||......+..+.-- .|..=||..|+.---.. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44567 798874333322222 58889999999532110 13579999653
No 194
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.36 E-value=28 Score=20.45 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.8
Q ss_pred CcccccccccccccC
Q 042112 49 AEAVECAVCLSHIEE 63 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~ 63 (132)
..+..|+.|.+.+..
T Consensus 23 ~~~r~CarC~~~LG~ 37 (76)
T 2csz_A 23 YSDRTCARCQESLGR 37 (76)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CCccchhhhCccccc
Confidence 467799999998754
No 195
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.15 E-value=24 Score=20.14 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 042112 90 AICPVCHDSIAP 101 (132)
Q Consensus 90 ~~CP~Cr~~~~~ 101 (132)
-.||+|+.++..
T Consensus 9 L~CP~ck~~L~~ 20 (68)
T 2jr6_A 9 LVCPVTKGRLEY 20 (68)
T ss_dssp CBCSSSCCBCEE
T ss_pred eECCCCCCcCeE
Confidence 479999987753
No 196
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.02 E-value=42 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=16.6
Q ss_pred EEeCCCCcccHHhHHHHHhcCCC-CCCCCCCCC
Q 042112 68 RELSCHHLFHAVCLDTWISNNYA-ICPVCHDSI 99 (132)
Q Consensus 68 ~~l~C~H~fh~~Ci~~wl~~~~~-~CP~Cr~~~ 99 (132)
+...|||.|-. ..... .||.|.++.
T Consensus 75 ~C~~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 75 ECKDCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp ECSSSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred EcCCCCCEEeC-------CCCCCCcCccccCCC
Confidence 44578888765 12346 899998763
No 197
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.86 E-value=24 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.958 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q 042112 90 AICPVCHDSIAP 101 (132)
Q Consensus 90 ~~CP~Cr~~~~~ 101 (132)
-.||+|+.++..
T Consensus 9 L~CP~ck~~L~~ 20 (68)
T 2hf1_A 9 LVCPLCKGPLVF 20 (68)
T ss_dssp CBCTTTCCBCEE
T ss_pred eECCCCCCcCeE
Confidence 479999987753
No 198
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.72 E-value=4.7 Score=23.75 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=12.3
Q ss_pred CCCCcccHHhHHHH
Q 042112 71 SCHHLFHAVCLDTW 84 (132)
Q Consensus 71 ~C~H~fh~~Ci~~w 84 (132)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998887
No 199
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.69 E-value=24 Score=19.26 Aligned_cols=11 Identities=36% Similarity=1.138 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q 042112 90 AICPVCHDSIA 100 (132)
Q Consensus 90 ~~CP~Cr~~~~ 100 (132)
-.||.|+.++.
T Consensus 11 L~CP~c~~~L~ 21 (56)
T 2kpi_A 11 LACPACHAPLE 21 (56)
T ss_dssp CCCSSSCSCEE
T ss_pred eeCCCCCCcce
Confidence 47999999764
No 200
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.53 E-value=36 Score=19.19 Aligned_cols=47 Identities=28% Similarity=0.642 Sum_probs=27.5
Q ss_pred CcccccccccccccCCCceEE-eCCCCcccHHhHHHHHh--cCCCCCCCCCC
Q 042112 49 AEAVECAVCLSHIEEGEEIRE-LSCHHLFHAVCLDTWIS--NNYAICPVCHD 97 (132)
Q Consensus 49 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~wl~--~~~~~CP~Cr~ 97 (132)
.+...| ||..... ++..++ -.|..=||..|+.--.. .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345567 9987654 332333 27888899999853221 01246777753
No 201
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.15 E-value=45 Score=22.37 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 042112 90 AICPVCHDS 98 (132)
Q Consensus 90 ~~CP~Cr~~ 98 (132)
..||+|..+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 489999753
No 202
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.98 E-value=14 Score=21.80 Aligned_cols=14 Identities=36% Similarity=1.063 Sum_probs=11.2
Q ss_pred CCCCcccHHhHHHH
Q 042112 71 SCHHLFHAVCLDTW 84 (132)
Q Consensus 71 ~C~H~fh~~Ci~~w 84 (132)
.|++.||..|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 38888888887777
No 203
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=21.92 E-value=21 Score=17.18 Aligned_cols=19 Identities=42% Similarity=0.719 Sum_probs=13.1
Q ss_pred cccccccccccccCCCceE
Q 042112 50 EAVECAVCLSHIEEGEEIR 68 (132)
Q Consensus 50 ~~~~C~IC~~~~~~~~~~~ 68 (132)
+--+|+.|+..-.+++..+
T Consensus 8 pfhecalcysitdpgerqr 26 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQR 26 (36)
T ss_dssp TTTCCSSSTTTTTTTCTTC
T ss_pred ccchheeEEeecCcchhhh
Confidence 3457999998776666543
No 204
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.78 E-value=1.2e+02 Score=19.80 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=24.3
Q ss_pred ccccccccccccCCCceEEeCCCCcccHHhHHHHHhcCCCCCCCCCCCCCC
Q 042112 51 AVECAVCLSHIEEGEEIRELSCHHLFHAVCLDTWISNNYAICPVCHDSIAP 101 (132)
Q Consensus 51 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~wl~~~~~~CP~Cr~~~~~ 101 (132)
--.|..|...+.... ...=+..||..|..+-+. ..|..|...|..
T Consensus 33 CF~C~~C~~~L~~~~---f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC---FSRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TSBCTTTCCBCCSCC---EESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred cCccCCCCCcCCCCC---cccCCeeeeccccccccc---ccccccccccCC
Confidence 345666666655422 123456666666655432 457777666643
No 205
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.30 E-value=25 Score=20.17 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q 042112 90 AICPVCHDSIA 100 (132)
Q Consensus 90 ~~CP~Cr~~~~ 100 (132)
-.||+|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (70)
T 2js4_A 9 LVCPVCKGRLE 19 (70)
T ss_dssp CBCTTTCCBEE
T ss_pred eECCCCCCcCE
Confidence 47999999774
Done!